BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5227
(693 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|399020459|ref|ZP_10722589.1| NADH dehydrogenase I, D subunit [Herbaspirillum sp. CF444]
gi|398094874|gb|EJL85228.1| NADH dehydrogenase I, D subunit [Herbaspirillum sp. CF444]
Length = 417
Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/415 (85%), Positives = 396/415 (95%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAEQ+TYLQS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTYLQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIEKLL I++P+RAQYIRVMFDE+TRLLNHLMWIG+H LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEKLLGIEVPLRAQYIRVMFDEMTRLLNHLMWIGAHGLDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AMGVLLYAFREREDL+DCYEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+SI+RN+KA K
Sbjct: 123 AMGVLLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDTMPQYKASIMRNDKAIK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNENRQGS+LDFIEDFTNRFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL+MGFTG
Sbjct: 183 QLNENRQGSMLDFIEDFTNRFPKYVDEYETLLTDNRIWKQRLVGIGVVSPERALAMGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG++WDLRKKQPYE+Y+LL+FDIP+GKNGDSYDRYLVR+EEMRQSN+IIKQC++W
Sbjct: 243 PMLRGSGIEWDLRKKQPYEVYDLLDFDIPVGKNGDSYDRYLVRVEEMRQSNRIIKQCVEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPVI +N+KI P R++MKSNMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRNNPGPVIIDNHKIAPPPRMDMKSNMEDLIHHFKLFTEGFHVPPGETYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL SL+EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRMKIRAPGFAHLSSLNEMAKGHMIADAVTIIGTQDIVFGEIDR 417
>gi|152979920|ref|YP_001353155.1| NADH dehydrogenase subunit D [Janthinobacterium sp. Marseille]
gi|229891400|sp|A6SY08.1|NUOD_JANMA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|151279997|gb|ABR88407.1| NADH dehydrogenase I chain D [Janthinobacterium sp. Marseille]
Length = 417
Score = 754 bits (1946), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/415 (82%), Positives = 390/415 (93%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAEQ+TYLQS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTYLQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIEK+LNI++P+RAQYIRVMFDEITR+LNHLMW+G+H+LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEKMLNIEVPLRAQYIRVMFDEITRILNHLMWLGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AMGV LYAFREREDL+DCYEAVSGARMHAAYYRPGGVYRDLP+ MPQ+K+SIIRN KA
Sbjct: 123 AMGVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDTMPQHKASIIRNAKAIS 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNENRQGSLLDFIEDFTNRFP +DEYETLLTDNRIWKQRLVGIGVVSPERA++MGFTG
Sbjct: 183 QLNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGIGVVSPERAMAMGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WDLRKKQPYE+Y+L++FDIP+G NGD YDRYLVR+EEMRQSN+IIKQC++W
Sbjct: 243 AMLRGSGVEWDLRKKQPYEVYDLMDFDIPVGTNGDCYDRYLVRVEEMRQSNRIIKQCVEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPV+++N+K+ P+R+ MKSNMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRNNAGPVMTDNHKVAPPSRVGMKSNMEDLIHHFKLFTEGFHVPTGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YL+SDGANKPYR+KIR+PGF HLQ L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 VYLISDGANKPYRMKIRAPGFPHLQGLDEMAKGHMIADAVTIIGTQDIVFGEIDR 417
>gi|134095028|ref|YP_001100103.1| NADH dehydrogenase subunit D [Herminiimonas arsenicoxydans]
gi|229891399|sp|A4G641.1|NUOD_HERAR RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|133738931|emb|CAL61978.1| NADH-ubiquinone oxidoreductase D subunit (NADH dehydrogenase
subunit D) [Herminiimonas arsenicoxydans]
Length = 417
Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/415 (81%), Positives = 392/415 (94%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAEQ+TYLQS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTYLQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVM+IEK+LN+++P+RAQYIRVMFDEITR+LNHLMW+G+H+LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMSIEKMLNLEVPLRAQYIRVMFDEITRILNHLMWLGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AMGV LYAFREREDL+DCYEAVSGARMHAAYYRPGGVYRDLP+ MPQ+K+SIIRN KA
Sbjct: 123 AMGVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDAMPQHKASIIRNAKAIN 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNENRQGSLLDFIEDFTNRFP +DEYETLLTDNRIWKQRLVG+GVVSPERA++MGFTG
Sbjct: 183 KLNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGVGVVSPERAMAMGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG++WDLRKKQPYE+Y+LL+FDIP+G NGD YDRYLVR+EEMRQSN+IIKQC++W
Sbjct: 243 PMLRGSGIEWDLRKKQPYEVYDLLDFDIPVGTNGDCYDRYLVRVEEMRQSNRIIKQCVEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N G V+++N+K+ P+R++MKSNMEDLIHHFKLFTEGF+VP+GE Y+ VEHPKGEFG
Sbjct: 303 LRNNPGSVMTDNHKVAPPSRVDMKSNMEDLIHHFKLFTEGFHVPVGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YL+SDGANKPYR+KIR+PGF HLQ L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 VYLISDGANKPYRMKIRAPGFPHLQGLDEMAKGHMIADAVTIIGTQDIVFGEIDR 417
>gi|329914959|ref|ZP_08276195.1| NADH-ubiquinone oxidoreductase chain D [Oxalobacteraceae bacterium
IMCC9480]
gi|327545009|gb|EGF30334.1| NADH-ubiquinone oxidoreductase chain D [Oxalobacteraceae bacterium
IMCC9480]
Length = 417
Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/415 (81%), Positives = 393/415 (94%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAEQ+TYLQS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTYLQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEH YVM+IEKLL +++P+RAQYIRVMFDEITRLLNHL+W+G+H+LD+G
Sbjct: 63 MDRLDYVSMMCNEHGYVMSIEKLLGLEVPLRAQYIRVMFDEITRLLNHLLWLGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AMGV LYAFREREDL+DCYEAVSGAR+HAAYYRPGGVYRDLPE+MP+Y +SI+RN KA
Sbjct: 123 AMGVFLYAFREREDLMDCYEAVSGARLHAAYYRPGGVYRDLPEVMPKYSASILRNAKAIG 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNENRQGSLLDFIEDFTNRFP+ +DEYETLLTDNRIWKQRLVG+GVVSPERAL+MGFTG
Sbjct: 183 QLNENRQGSLLDFIEDFTNRFPRYVDEYETLLTDNRIWKQRLVGVGVVSPERALAMGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG++WDLRKKQPYE+Y+LL+FDIP+G NGD YDRYLVR+EEMRQSNKIIKQC++W
Sbjct: 243 PMLRGSGIEWDLRKKQPYEVYDLLDFDIPVGVNGDCYDRYLVRVEEMRQSNKIIKQCVEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPV+++N+K+ P+R+NMKSNME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRNNPGPVMTDNHKVAPPSRVNMKSNMEELIHHFKLFTEGFHVPPGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YL+SDGANKPYR+KIR+PGFAHLQ L+EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 VYLISDGANKPYRLKIRAPGFAHLQGLNEMAKGHMIADAVTIIGTQDIVFGEIDR 417
>gi|398836856|ref|ZP_10594182.1| NADH dehydrogenase I, D subunit [Herbaspirillum sp. YR522]
gi|398210643|gb|EJM97285.1| NADH dehydrogenase I, D subunit [Herbaspirillum sp. YR522]
Length = 417
Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/415 (82%), Positives = 388/415 (93%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHR TEKLAEQ+T+LQS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAEQKTFLQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIE+LL +++P+RAQYIRVMFDEITRLLNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMSNEHGYVLAIERLLGLEVPLRAQYIRVMFDEITRLLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AMGVLLYAFREREDL DCYEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S++RN +A +
Sbjct: 123 AMGVLLYAFREREDLFDCYEAVSGARMHAAYYRPGGVYRDLPDSMPQYKASVVRNERAIR 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNENRQGSLLDFIEDFTNRFP +DEYETLLTDNRIWKQRLVGIGVVSPERAL MGF+G
Sbjct: 183 ELNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGIGVVSPERALQMGFSG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV+WDLRKKQPYE+Y+LL+FDIP+GKNGDSYDRYLVR+ EMRQSN+IIKQC++W
Sbjct: 243 PMLRGSGVEWDLRKKQPYEVYDLLDFDIPVGKNGDSYDRYLVRVAEMRQSNRIIKQCVEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPVI++N+KI P R MKSNMEDLIHHFKLFTEGF VP GE Y+ VEHPKGEFG
Sbjct: 303 LRNNPGPVITDNHKIAPPKRTEMKSNMEDLIHHFKLFTEGFRVPPGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHLQ+L+EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLQALNEMAKGHMIADAVTIIGTQDIVFGEIDR 417
>gi|409405592|ref|ZP_11254054.1| NADH dehydrogenase I subunit D [Herbaspirillum sp. GW103]
gi|386434141|gb|EIJ46966.1| NADH dehydrogenase I subunit D [Herbaspirillum sp. GW103]
Length = 417
Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/415 (82%), Positives = 387/415 (93%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHR TEKLAEQ+T+LQS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAEQKTFLQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIE+LL +++P+RAQYIRVMFDEITRLLNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMSNEHGYVLAIERLLGLEVPLRAQYIRVMFDEITRLLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AMGVLLYAFREREDL DCYEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+SI+RN KA +
Sbjct: 123 AMGVLLYAFREREDLFDCYEAVSGARMHAAYYRPGGVYRDLPDSMPQYKASIVRNEKAIR 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNENRQGSLLDFIEDFTNRFP +DEYETLLTDNRIWKQRLVG+GVVSPERAL MGFTG
Sbjct: 183 ELNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGVGVVSPERALQMGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPYE+Y+LL+FDIP+GKNGD YDRYLVR+ EMRQSN+IIKQC++W
Sbjct: 243 PMLRGSGIAWDLRKKQPYEVYDLLDFDIPVGKNGDCYDRYLVRVAEMRQSNRIIKQCVEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPVI++N+KI P R +MKSNMEDLIHHFKLFTEGF VP GE Y+ VEHPKGEFG
Sbjct: 303 LRNNPGPVITDNHKIAPPKRADMKSNMEDLIHHFKLFTEGFRVPAGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHLQ+L+EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLQALNEMAKGHMIADAVTIIGTQDIVFGEIDR 417
>gi|300311098|ref|YP_003775190.1| NADH dehydrogenase I subunit D [Herbaspirillum seropedicae SmR1]
gi|300073883|gb|ADJ63282.1| NADH dehydrogenase I (Chain D) oxidoreductase protein
[Herbaspirillum seropedicae SmR1]
Length = 417
Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/415 (82%), Positives = 386/415 (93%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHR TEKLAEQ+T+LQS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAEQKTFLQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIE++L I +P+RAQYIRVMFDEITRLLNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMSNEHGYVLAIERMLGIDVPLRAQYIRVMFDEITRLLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AMGVLLYAFREREDL DCYEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+SI+RN KA +
Sbjct: 123 AMGVLLYAFREREDLFDCYEAVSGARMHAAYYRPGGVYRDLPDSMPQYKASIVRNEKAIR 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNENRQGSLLDFIEDFTNRFP +DEYETLLTDNRIWKQRLVG+GVVSPERAL MGF+G
Sbjct: 183 ELNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGVGVVSPERALQMGFSG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPYE+Y+LL+FDIP+GKNGD YDRYLVR+ EMRQSN+IIKQC++W
Sbjct: 243 PMLRGSGIAWDLRKKQPYEVYDLLDFDIPVGKNGDCYDRYLVRVAEMRQSNRIIKQCVEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPVI++N+KI P R +MKSNMEDLIHHFKLFTEGF VP GE Y+ VEHPKGEFG
Sbjct: 303 LRNNPGPVITDNHKIAPPKRADMKSNMEDLIHHFKLFTEGFRVPAGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDGANKPYR+KIR+PGFAHLQ+L+EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 VYLVSDGANKPYRLKIRAPGFAHLQALNEMAKGHMIADAVTIIGTQDIVFGEIDR 417
>gi|415950781|ref|ZP_11557001.1| NADH-quinone oxidoreductase subunit D [Herbaspirillum frisingense
GSF30]
gi|407757587|gb|EKF67542.1| NADH-quinone oxidoreductase subunit D [Herbaspirillum frisingense
GSF30]
Length = 417
Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/415 (81%), Positives = 387/415 (93%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHR TEKLAEQ+T+LQS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAEQKTFLQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIE+LL +++P+RAQYIRVMFDEITRLLNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMSNEHGYVLAIERLLGLEVPLRAQYIRVMFDEITRLLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AMGVLLYAFREREDL DCYEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+SI+RN KA +
Sbjct: 123 AMGVLLYAFREREDLFDCYEAVSGARMHAAYYRPGGVYRDLPDSMPQYKASIVRNEKAIR 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNENRQGSLLDFIEDFTNRFP +DEYETLLTDNRIWKQRLVG+GVVSPERAL MGF+G
Sbjct: 183 ELNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGVGVVSPERALQMGFSG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPYE+Y+L++FDIP+GKNGD YDRYLVR+ EMRQSN+IIKQC++W
Sbjct: 243 PMLRGSGIAWDLRKKQPYEVYDLMDFDIPVGKNGDCYDRYLVRVAEMRQSNRIIKQCVEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPVI++N+KI P R +MKSNMEDLIHHFKLFTEGF VP GE Y+ VEHPKGEFG
Sbjct: 303 LRNNPGPVITDNHKIAPPKRADMKSNMEDLIHHFKLFTEGFRVPAGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDGANKPYR+KIR+PGFAHLQ+L+EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 VYLVSDGANKPYRLKIRAPGFAHLQALNEMAKGHMIADAVTIIGTQDIVFGEIDR 417
>gi|340786784|ref|YP_004752249.1| NADH-ubiquinone oxidoreductase subunit D [Collimonas fungivorans
Ter331]
gi|340552051|gb|AEK61426.1| NADH-ubiquinone oxidoreductase chain D [Collimonas fungivorans
Ter331]
Length = 417
Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/415 (81%), Positives = 387/415 (93%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHR TEKLAEQ+TYLQS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAEQKTYLQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEH YVMAIE+LL +++P+RAQYIRVMFDEITRLLNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMCNEHGYVMAIERLLGLEVPLRAQYIRVMFDEITRLLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM VLLYAFREREDL+DCYEAVSGARMHAAYYRPGGVYRDLP+ MPQ+K+S++RN KA
Sbjct: 123 AMAVLLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDTMPQHKASLVRNAKAIS 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNENRQGSLLDFIEDFT RFPK +DEYETLLTDNRIWKQRLVGIGVVSPERA +MGFTG
Sbjct: 183 ALNENRQGSLLDFIEDFTVRFPKYVDEYETLLTDNRIWKQRLVGIGVVSPERAKAMGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WDLRKKQPYE+Y+LL+FDIP+GKNGD YDRYLVR+EEMRQSN+IIKQC++W
Sbjct: 243 AMLRGSGVEWDLRKKQPYEVYDLLDFDIPVGKNGDCYDRYLVRVEEMRQSNRIIKQCVEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPV++ N+K+ +RI+MKSNME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRNNSGPVMTTNHKVAPSSRIDMKSNMEELIHHFKLFTEGFHVPPGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDGANKPYR+KIR+PGF HLQ L+EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 VYIVSDGANKPYRLKIRAPGFPHLQGLNEMAKGHMIADAVTIIGTQDIVFGEIDR 417
>gi|413000577|emb|CCO25577.1| NADH dehydrogenase subunit D [uncultured bacterium]
Length = 417
Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/415 (80%), Positives = 387/415 (93%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAEQ+TYLQS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTYLQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIE+LL +++P+RAQYIRVMFDEITRLLNHLMW+G+H+LD+G
Sbjct: 63 MDRLDYVSMMSNEHAYVMAIERLLGVEVPLRAQYIRVMFDEITRLLNHLMWLGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+DCYEAVSGARMHAAYYRPGGVYRDLP++MPQ+K+S+IRN KA +
Sbjct: 123 AMTVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDVMPQHKASMIRNEKAIR 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN NRQGSLLDFIEDFT RFP +DEYETLLTDNRIWKQRLVGIGVVSPERA +MGFTG
Sbjct: 183 ELNSNRQGSLLDFIEDFTRRFPTYVDEYETLLTDNRIWKQRLVGIGVVSPERAKAMGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG++WDLRKKQPYE+Y+LL+FDIP+G NGD YDRYLVR+ EMR+SN+IIKQC++W
Sbjct: 243 PMLRGSGIEWDLRKKQPYEVYDLLDFDIPVGTNGDCYDRYLVRVAEMRESNRIIKQCVEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR++ GPVIS+N+K+ P+R+NMK+NME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRNHPGPVISDNHKVAPPSRVNMKTNMEELIHHFKLFTEGFHVPPGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGF HLQ L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRMKIRAPGFPHLQGLDEMAKGHMIADAVTIIGTQDIVFGEIDR 417
>gi|149927544|ref|ZP_01915798.1| NADH dehydrogenase subunit D [Limnobacter sp. MED105]
gi|149823817|gb|EDM83043.1| NADH dehydrogenase subunit D [Limnobacter sp. MED105]
Length = 417
Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/415 (80%), Positives = 382/415 (92%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEVV++ADPHIGLLHR TEKLAE +T++QSLPY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRGTEKLAEHKTFIQSLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAY MAIEKLLNI++P+RAQYIRVMFDEITR+LNHL+W+G+H LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYCMAIEKLLNIEVPVRAQYIRVMFDEITRILNHLLWLGAHGLDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+DCYEAVSGAR+HAAY+RPGGVYRDLP+ MPQYK S +R+ K
Sbjct: 123 AMAVFLYAFREREDLMDCYEAVSGARLHAAYFRPGGVYRDLPDRMPQYKPSKVRSAKKVD 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN+NRQGSLLDF++DFT RFPK +DEYETLLTDNRIWKQRLVG+GVV+PERALSMGFTG
Sbjct: 183 ALNKNRQGSLLDFLDDFTQRFPKYVDEYETLLTDNRIWKQRLVGVGVVTPERALSMGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPYE+Y+ L+FDIP+GKNGD YDRYLVR+EEMRQSNKIIKQCI W
Sbjct: 243 PMLRGSGIAWDLRKKQPYEVYDRLDFDIPVGKNGDCYDRYLVRVEEMRQSNKIIKQCIDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+S+N+K+T P R++MK+NME+LIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 303 LRVNPGPVMSDNHKVTPPKRVDMKTNMEELIHHFKLFTEGMHVPEGESYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLV+DGANKPYR+KIR+PGFAHLQ L EM GHM++DVVTIIGTQDIVFGEIDR
Sbjct: 363 IYLVADGANKPYRLKIRAPGFAHLQGLDEMSRGHMLADVVTIIGTQDIVFGEIDR 417
>gi|312796899|ref|YP_004029821.1| NADH-quinone oxidoreductase subunit D [Burkholderia rhizoxinica HKI
454]
gi|312168674|emb|CBW75677.1| NADH-quinone oxidoreductase chain D (EC 1.6.5.3) [Burkholderia
rhizoxinica HKI 454]
Length = 417
Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/415 (80%), Positives = 377/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T+LQS+PY
Sbjct: 3 DIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEHKTFLQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIEKL+ I +P+RAQYIRVMFDEITR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMANEHAYVMAIEKLVGIDVPLRAQYIRVMFDEITRILNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP++MPQYK+S IRN KA
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDVMPQYKASKIRNEKALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNENRQGSLLDFIEDFTNRFP +DEYETLLTDNRIWKQRLVGIGVV+PERAL +G TG
Sbjct: 183 RLNENRQGSLLDFIEDFTNRFPGCVDEYETLLTDNRIWKQRLVGIGVVTPERALQLGMTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV+WDLRKKQPYE+Y+ L+FDIP+G GD YDRYLVRIEEMRQSN+IIKQCI W
Sbjct: 243 PMLRGSGVEWDLRKKQPYEVYDQLDFDIPVGAGGDCYDRYLVRIEEMRQSNRIIKQCIAW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+ +N K+ P+R+NMKSNME+LIHHFKLFTEG +VP GE Y VEHPKGEFG
Sbjct: 303 LRKNPGPVMVDNYKVAPPSRLNMKSNMEELIHHFKLFTEGMHVPEGEAYVAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PG+AHL +L EM GHMI+D VTIIGTQDIVFGE+DR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEVDR 417
>gi|421746421|ref|ZP_16184216.1| NADH dehydrogenase subunit D [Cupriavidus necator HPC(L)]
gi|409775034|gb|EKN56576.1| NADH dehydrogenase subunit D [Cupriavidus necator HPC(L)]
Length = 417
Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/415 (79%), Positives = 377/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAEQ+T++QS+PY
Sbjct: 3 DIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTWIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIEKL+ I +PIRAQYIRVMFDEITRLLNHLMWIGSH+LD+G
Sbjct: 63 MDRLDYVSMMANEHAYVMAIEKLVGIDVPIRAQYIRVMFDEITRLLNHLMWIGSHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFRERED+ D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S + N +A K
Sbjct: 123 AMAVFLYAFREREDMFDMYEAVSGARMHAAYYRPGGVYRDLPDTMPQYKASKVHNERAIK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R GSLLDFIEDFTNRFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL MGFTG
Sbjct: 183 AMNEARSGSLLDFIEDFTNRFPKYVDEYETLLTDNRIWKQRLVGIGVVSPERALQMGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG++WDLRKKQPYE+Y+ L+FD+P+G GD Y RYLVR+EEMRQSN+IIKQC+ W
Sbjct: 243 PMLRGSGIEWDLRKKQPYEVYDKLDFDVPVGVGGDCYSRYLVRVEEMRQSNRIIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+S+N+K+T P+R++MKSNME+LIHHFKLFTEG VP GE Y+ VEHPKGEFG
Sbjct: 303 LRRNPGPVMSDNHKVTPPSRVDMKSNMEELIHHFKLFTEGIRVPEGETYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY +SDGANKPYR+KIR+PGFAHL +L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYAISDGANKPYRLKIRAPGFAHLAALDEMAKGHMIADAVTIIGTQDIVFGEIDR 417
>gi|395763175|ref|ZP_10443844.1| NADH dehydrogenase subunit D [Janthinobacterium lividum PAMC 25724]
Length = 417
Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/415 (78%), Positives = 381/415 (91%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LE++GEV+++ADPHIGLLHRATEKLAEQ+TYLQS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEMDGEVIQRADPHIGLLHRATEKLAEQKTYLQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIEK+L +++P+RAQYIRVMFDE+TR+LNHLMW+G+H+LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEKMLGLEVPLRAQYIRVMFDEMTRILNHLMWLGTHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AMG LY FR+REDL D YEAVSGARMHAAYYRPGGVYRDLP+ MPQ+K+SIIRN KA
Sbjct: 123 AMGPFLYCFRDREDLFDAYEAVSGARMHAAYYRPGGVYRDLPDAMPQHKASIIRNAKAIS 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNENRQGSLLDFIEDF RFP ++DEYETLLTDNRIWKQR VGIGVVSPE AL+MGFTG
Sbjct: 183 KLNENRQGSLLDFIEDFARRFPNSVDEYETLLTDNRIWKQRTVGIGVVSPEDALAMGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WDLRKKQPYE+Y+L++FDIPIG NGD YDRYLVR+EE+RQSN+IIKQC++W
Sbjct: 243 AMLRGSGVQWDLRKKQPYEVYDLMDFDIPIGTNGDCYDRYLVRVEELRQSNRIIKQCVEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N+GPV+++N K+ P R++MK+NME LIHHFKLFTEGF+VP GE YS VEHPKGEFG
Sbjct: 303 LRNNEGPVMTSNRKVAPPGRVDMKTNMESLIHHFKLFTEGFHVPPGEAYSAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDGANKPYR+K+R+P +AHLQSL EM GHM++D VTIIGTQDIVFG IDR
Sbjct: 363 VYLVSDGANKPYRMKLRAPDYAHLQSLDEMARGHMLADAVTIIGTQDIVFGSIDR 417
>gi|390572966|ref|ZP_10253158.1| NADH dehydrogenase subunit D [Burkholderia terrae BS001]
gi|420253864|ref|ZP_14756898.1| NADH dehydrogenase I, D subunit [Burkholderia sp. BT03]
gi|389935084|gb|EIM97020.1| NADH dehydrogenase subunit D [Burkholderia terrae BS001]
gi|398050740|gb|EJL43090.1| NADH dehydrogenase I, D subunit [Burkholderia sp. BT03]
Length = 417
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/415 (79%), Positives = 377/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YVMAIEKLL I +PIRA+YIRV+FDE+TR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVMAIEKLLGIDVPIRAKYIRVLFDEVTRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S IRN KA
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNAKALS 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE RQGSLLDFIEDF NRFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL +G TG
Sbjct: 183 KMNETRQGSLLDFIEDFFNRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQLGMTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG++WDLRKKQPYE+Y+ ++FDIP+G NGD YDRYLVR+EEMRQS +I KQCI+W
Sbjct: 243 PMLRGSGIEWDLRKKQPYEVYDQMDFDIPVGVNGDCYDRYLVRVEEMRQSTRIAKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+++N+KI P+R+ MKSNMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVMTDNHKIAPPSRVGMKSNMEDLIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PG+AHL +L EM GHMI+D VTIIGTQDIVFGE+DR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEVDR 417
>gi|374365454|ref|ZP_09623544.1| NADH dehydrogenase subunit D [Cupriavidus basilensis OR16]
gi|373103027|gb|EHP44058.1| NADH dehydrogenase subunit D [Cupriavidus basilensis OR16]
Length = 417
Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/415 (79%), Positives = 376/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAEQ+T++QS+PY
Sbjct: 3 DIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTWIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIEK+L +++PIRAQYIRVMFDEITRLLNHLMWIGSH+LD+G
Sbjct: 63 MDRLDYVSMMVNEHAYVMAIEKMLGLEVPIRAQYIRVMFDEITRLLNHLMWIGSHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFRERED+ D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S I N +A K
Sbjct: 123 AMAVFLYAFREREDMFDMYEAVSGARMHAAYYRPGGVYRDLPDTMPQYKASKIHNERAIK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R GSLLDFIEDFTNRFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL MGFTG
Sbjct: 183 AMNEARSGSLLDFIEDFTNRFPKYVDEYETLLTDNRIWKQRLVGIGVVSPERALQMGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG++WDLRKKQPYE+Y+ ++F +P+G GD Y RYLVR+EEMRQSN IIKQCI W
Sbjct: 243 PMLRGSGIEWDLRKKQPYEVYDRMDFQVPVGVGGDCYSRYLVRVEEMRQSNNIIKQCIDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+S+N+K+ P+R++MKSNME+LIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 303 LRRNPGPVMSDNHKVAPPSRVDMKSNMEELIHHFKLFTEGIHVPEGETYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY +SDGANKPYR+KIR+PGFAHL +L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYAISDGANKPYRLKIRAPGFAHLAALDEMAKGHMIADAVTIIGTQDIVFGEIDR 417
>gi|82702223|ref|YP_411789.1| NADH dehydrogenase subunit D [Nitrosospira multiformis ATCC 25196]
gi|123544730|sp|Q2YA24.1|NUOD_NITMU RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|82410288|gb|ABB74397.1| NADH dehydrogenase subunit D [Nitrosospira multiformis ATCC 25196]
Length = 417
Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/415 (78%), Positives = 379/415 (91%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +TY+QS+PY
Sbjct: 3 EIRNYTMNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEYKTYIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIEKLL +++PIRAQYIRVMFDEITR+LNHL+W+G+H+LD+G
Sbjct: 63 MDRLDYVSMMANEHAYVMAIEKLLQLEVPIRAQYIRVMFDEITRILNHLLWLGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFR+REDL+D YE+VSGARMHAAYYRPGGVYRDLP+ MPQYK+S I + K TK
Sbjct: 123 AMTVFLYAFRDREDLMDAYESVSGARMHAAYYRPGGVYRDLPDSMPQYKASKIHDEKTTK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
NENRQGSLLDFIEDFTNRFP +DEYETLLTDNRIWKQRLVGIG VSPERA+++GFTG
Sbjct: 183 ARNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGIGTVSPERAMALGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV+WDLRKKQPYE+Y+ L+FDIP+G NGD YDRYLVRIEE RQSN+II+QC+ W
Sbjct: 243 PMLRGSGVEWDLRKKQPYEVYDQLDFDIPVGVNGDCYDRYLVRIEEFRQSNRIIRQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+K+ P+R+NMK NME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVITDNHKVAPPSRVNMKQNMEELIHHFKLFTEGFHVPPGETYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYL+SDGAN PYR+KIR+PGFAHL +L EM GHMI+DVV IIGTQDIVFGEIDR
Sbjct: 363 IYLISDGANMPYRMKIRAPGFAHLAALDEMSRGHMIADVVAIIGTQDIVFGEIDR 417
>gi|186476761|ref|YP_001858231.1| NADH dehydrogenase subunit D [Burkholderia phymatum STM815]
gi|229891279|sp|B2JDM5.1|NUOD_BURP8 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|184193220|gb|ACC71185.1| NADH dehydrogenase I, D subunit [Burkholderia phymatum STM815]
Length = 417
Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/415 (79%), Positives = 377/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIEKLL I +PIRA+YIRV+FDE+TR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVLAIEKLLGIDVPIRAKYIRVLFDEVTRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S IRN KA
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNTKALS 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNENRQGSLLDFIEDF NRFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL MG TG
Sbjct: 183 KLNENRQGSLLDFIEDFFNRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQMGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG++WDLRKKQPYE+Y+ ++FDIP+G NGD YDRYLVR+EEMRQS +I KQCI+W
Sbjct: 243 AMLRGSGIEWDLRKKQPYEVYDQMDFDIPVGVNGDCYDRYLVRVEEMRQSTRIAKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+++N+K+ P+R+ MKSNME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVMTDNHKVAPPSRVGMKSNMEELIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PG+AHL +L EM GHMI+D VTIIGTQDIVFGE+DR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEVDR 417
>gi|94309875|ref|YP_583085.1| NADH dehydrogenase subunit D [Cupriavidus metallidurans CH34]
gi|229891297|sp|Q1LPW0.1|NUOD_RALME RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|93353727|gb|ABF07816.1| NADH-ubiquinone oxidoreductase D subunit (NADH dehydrogenase
subunit D) [Cupriavidus metallidurans CH34]
Length = 417
Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/415 (78%), Positives = 375/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAEQ+T++QS+PY
Sbjct: 3 DIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTWIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIE+LL +++PIRAQYIRVMFDEITRLLNHLMWIGSH+LD+G
Sbjct: 63 MDRLDYVSMMVNEHAYVMAIERLLGLEVPIRAQYIRVMFDEITRLLNHLMWIGSHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFRERED+ D YEAVSGARMHAAYYRPGGVYRDLP+ MPQY++S + N KA K
Sbjct: 123 AMAVFLYAFREREDMFDMYEAVSGARMHAAYYRPGGVYRDLPDTMPQYRASKVHNEKAIK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
++NE R GSLLDFIEDFTNRFP +DEYETLLTDNRIWKQRLV IGVV+PERAL MGFTG
Sbjct: 183 VMNEARSGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVDIGVVTPERALQMGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG++WDLRKKQPYE+Y+ ++FDIP+G GD Y RYLVR+EEMRQSN+IIKQCI W
Sbjct: 243 PMLRGSGIEWDLRKKQPYEVYDKMDFDIPVGTAGDCYSRYLVRVEEMRQSNRIIKQCIDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI+ N+K+ P+R++MKSNME+LIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 303 LRRNPGPVITENHKVAPPSRVDMKSNMEELIHHFKLFTEGIHVPAGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY +SDGANKPYR+KIR+PGF HL +L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYAISDGANKPYRLKIRAPGFVHLAALDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>gi|430805949|ref|ZP_19433064.1| NADH dehydrogenase subunit D [Cupriavidus sp. HMR-1]
gi|429501777|gb|ELA00104.1| NADH dehydrogenase subunit D [Cupriavidus sp. HMR-1]
Length = 417
Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/415 (78%), Positives = 376/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAEQ+T++Q++PY
Sbjct: 3 DIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTWIQNVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIE+LL +++PIRAQYIRVMFDEITRLLNHLMWIGSH+LD+G
Sbjct: 63 MDRLDYVSMMVNEHAYVMAIERLLGLEVPIRAQYIRVMFDEITRLLNHLMWIGSHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFRERED+ D YEAVSGARMHAAYYRPGGVYRDLP+ MPQY++S + N KA K
Sbjct: 123 AMAVFLYAFREREDMFDMYEAVSGARMHAAYYRPGGVYRDLPDTMPQYRASKVHNEKAIK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
++NE R GSLLDFIEDFTNRFP +DEYETLLTDNRIWKQRLV IGVV+PERAL MGFTG
Sbjct: 183 VMNEARSGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVDIGVVTPERALQMGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG++WDLRKKQPYE+Y+ ++FDIP+G GD Y RYLVR+EEMRQSN+IIKQCI W
Sbjct: 243 PMLRGSGIEWDLRKKQPYEVYDKMDFDIPVGTAGDCYSRYLVRVEEMRQSNRIIKQCIDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI+ N+K+ P+R++MKSNME+LIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 303 LRRNPGPVITENHKVAPPSRVDMKSNMEELIHHFKLFTEGIHVPAGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY +SDGANKPYR+KIR+PGFAHL +L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYAISDGANKPYRLKIRAPGFAHLAALDEMAKGHMIADAVTIIGTQDIVFGEIDR 417
>gi|241663481|ref|YP_002981841.1| NADH dehydrogenase subunit D [Ralstonia pickettii 12D]
gi|309781855|ref|ZP_07676588.1| NADH dehydrogenase (quinone), D subunit [Ralstonia sp. 5_7_47FAA]
gi|404396484|ref|ZP_10988278.1| NADH-quinone oxidoreductase subunit D [Ralstonia sp. 5_2_56FAA]
gi|240865508|gb|ACS63169.1| NADH dehydrogenase I, D subunit [Ralstonia pickettii 12D]
gi|308919496|gb|EFP65160.1| NADH dehydrogenase (quinone), D subunit [Ralstonia sp. 5_7_47FAA]
gi|348613574|gb|EGY63153.1| NADH-quinone oxidoreductase subunit D [Ralstonia sp. 5_2_56FAA]
Length = 417
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/415 (78%), Positives = 379/415 (91%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAEQ+T++QS+PY
Sbjct: 3 DIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTWIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIE+LL +++P+RAQYIRVMFDEITR++NHLMWIGSH+LD+G
Sbjct: 63 MDRLDYVSMMVNEHAYVMAIERLLGLEVPLRAQYIRVMFDEITRIMNHLMWIGSHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S +RN KA
Sbjct: 123 AMAVFLYAFREREDLFDMYEAVSGARMHAAYYRPGGVYRDLPDTMPQYKASKVRNEKALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE R GSLLDFIEDFTNRFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL+ GF+G
Sbjct: 183 ALNETRSGSLLDFIEDFTNRFPKYVDEYETLLTDNRIWKQRLVGIGVVSPERALNKGFSG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG++WD+RKKQPYE+Y+ ++FDIP+G NGD YDRYLVR+EEMRQSN+II+QCI+W
Sbjct: 243 AMLRGSGIEWDVRKKQPYEVYDRIDFDIPVGVNGDCYDRYLVRVEEMRQSNRIIRQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+K+ P+R++MK+NME+LIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVITDNHKVAPPSRVDMKTNMEELIHHFKLFTEGMHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY +SDGANKPYR+KIR+PGF HL +L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYAISDGANKPYRLKIRAPGFVHLAALDEMAKGHMIADAVTIIGTQDIVFGEIDR 417
>gi|194289162|ref|YP_002005069.1| NADH dehydrogenase subunit d [Cupriavidus taiwanensis LMG 19424]
gi|229891387|sp|B3R3X0.1|NUOD_CUPTR RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|193222997|emb|CAQ69002.1| NADH:ubiquinone oxidoreductase complex I, chain D [Cupriavidus
taiwanensis LMG 19424]
Length = 417
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/415 (78%), Positives = 375/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAEQ+T++QS+PY
Sbjct: 3 DIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTWIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIE+LL +++P+RAQYIRVMFDEITRLLNHLMWIGSH+LD+G
Sbjct: 63 MDRLDYVSMMVNEHAYVMAIERLLGLEVPVRAQYIRVMFDEITRLLNHLMWIGSHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFRERED+ D YEAVSGARMHAAYYRPGGVYRDLP+ MPQY++S + N +A K
Sbjct: 123 AMAVFLYAFREREDMFDMYEAVSGARMHAAYYRPGGVYRDLPDTMPQYRASKVHNERAIK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R GSLLDFIEDFTNRFPK +DEYETLLTDNRIWKQRLV IGVVSPERAL MGFTG
Sbjct: 183 AMNEARSGSLLDFIEDFTNRFPKYVDEYETLLTDNRIWKQRLVDIGVVSPERALQMGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPYE+Y+ L+FD+P+G GD Y RYLVR+EEMRQSN+IIKQC+ W
Sbjct: 243 PMLRGSGIAWDLRKKQPYEVYDKLDFDVPVGVGGDCYARYLVRVEEMRQSNRIIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI+ N+K+ P+R++MKSNME+LIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 303 LRRNPGPVITENHKVAPPSRVDMKSNMEELIHHFKLFTEGIHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY +SDGANKPYR+KIR+PGFAHL +L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYAISDGANKPYRLKIRAPGFAHLAALDEMAKGHMIADAVTIIGTQDIVFGEIDR 417
>gi|386333042|ref|YP_006029211.1| nadh dehydrogenaseI(chain d) protein [Ralstonia solanacearum Po82]
gi|334195490|gb|AEG68675.1| nadh dehydrogenaseI(chain d) protein [Ralstonia solanacearum Po82]
Length = 417
Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/415 (77%), Positives = 379/415 (91%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAEQ+T++QS+PY
Sbjct: 3 DIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTWIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIE+LL +++P+RAQYIRVMFDEITR++NHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHAYVMAIERLLGVEVPLRAQYIRVMFDEITRIMNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL D YEAVSGARMHAAYYRPGGVYRDLP+ MP++K+S +RN KA
Sbjct: 123 AMAVFLYAFREREDLFDMYEAVSGARMHAAYYRPGGVYRDLPDTMPKFKASKVRNEKALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE R GSLLDFIE FT+RFPK +DEYETLLTDNRIWKQRLVGIGVV+PERAL G TG
Sbjct: 183 ALNETRSGSLLDFIEAFTDRFPKYVDEYETLLTDNRIWKQRLVGIGVVTPERALQKGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WD+RKKQPYE+Y+ ++FDIP+G NGDSYDRYLVR+EEMRQSN+II+QCI W
Sbjct: 243 PMLRGSGIAWDVRKKQPYEVYDRVDFDIPVGVNGDSYDRYLVRVEEMRQSNRIIRQCIDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+K+ P+R++MK+NME+LIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNSGPVITDNHKVAPPSRVDMKTNMEELIHHFKLFTEGMHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY++SDGANKPYR+KIR+PGFAHL +L EM+ GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYVISDGANKPYRLKIRAPGFAHLAALDEMVRGHMIADAVTIIGTQDIVFGEIDR 417
>gi|339484294|ref|YP_004696080.1| NAD(P)H-quinone oxidoreductase subunit H [Nitrosomonas sp. Is79A3]
gi|338806439|gb|AEJ02681.1| NAD(P)H-quinone oxidoreductase subunit H [Nitrosomonas sp. Is79A3]
Length = 417
Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/415 (78%), Positives = 380/415 (91%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRL+LEL+GEVV +ADPHIGLLHRATEKLAE +TY+QS+PY
Sbjct: 3 EIRNYTMNFGPQHPAAHGVLRLVLELDGEVVLRADPHIGLLHRATEKLAENKTYIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIEKLL +++PIRAQYIRVMFDEITR+LNHL+WIG+H+LD+G
Sbjct: 63 MDRLDYVSMMANEHAYVMAIEKLLQVEVPIRAQYIRVMFDEITRILNHLLWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM + LYAFREREDL+DCYEAVSGAR+HAAYYRPGGVYRDLP+ MPQY+SS I N K T+
Sbjct: 123 AMTMFLYAFREREDLMDCYEAVSGARLHAAYYRPGGVYRDLPDTMPQYQSSKIHNQKQTR 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+ N NR+GSLLDFIEDFTNRFPK +DEYETLLTDNRIWKQRLV IG+VSPERA ++GFTG
Sbjct: 183 LRNANREGSLLDFIEDFTNRFPKYVDEYETLLTDNRIWKQRLVDIGIVSPERAKALGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV+WDLR+KQPYE+Y+ ++FDIP+G NGD YDRYLVR+EE RQSN+IIKQC+ W
Sbjct: 243 PMLRGSGVEWDLRRKQPYEVYDRMDFDIPVGVNGDCYDRYLVRMEEFRQSNRIIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+KI P+R++MK NME++IHHFKLFTEGF++P GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVITDNHKIAPPSRVDMKQNMEEMIHHFKLFTEGFHIPPGETYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVS+GANKPYR+KIR+PGFAHL +L EM GHMISDVV IIGTQDIVFGEIDR
Sbjct: 363 IYLVSNGANKPYRLKIRAPGFAHLAALDEMSRGHMISDVVAIIGTQDIVFGEIDR 417
>gi|187923343|ref|YP_001894985.1| NADH dehydrogenase subunit D [Burkholderia phytofirmans PsJN]
gi|229891280|sp|B2T2F0.1|NUOD_BURPP RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|187714537|gb|ACD15761.1| NADH dehydrogenase I, D subunit [Burkholderia phytofirmans PsJN]
Length = 417
Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/415 (78%), Positives = 378/415 (91%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAETKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YVMAIEKLL I++P+RAQYIRVMFDE+TR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVMAIEKLLGIEVPVRAQYIRVMFDEVTRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S IRN KA
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNAKALS 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NENRQGSLLDFI+DF RFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL++G TG
Sbjct: 183 KMNENRQGSLLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALNLGMTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG++WDLRKKQPYE+Y+ L+FDIP+G NGD YDRYLVR+EEMRQS +I+KQCI+W
Sbjct: 243 AMLRGSGIEWDLRKKQPYEVYDKLDFDIPVGVNGDCYDRYLVRVEEMRQSTRIVKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+ +N+K+ P+R+ MKSNME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVMIDNHKVAPPSRVGMKSNMEELIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYL+SDGANKPYR+KIR+PG+AHL +L EM GHMI+D VTIIGTQDIVFGE+DR
Sbjct: 363 IYLISDGANKPYRLKIRAPGYAHLSTLDEMARGHMIADAVTIIGTQDIVFGEVDR 417
>gi|385203220|ref|ZP_10030090.1| NADH dehydrogenase I, D subunit [Burkholderia sp. Ch1-1]
gi|385183111|gb|EIF32385.1| NADH dehydrogenase I, D subunit [Burkholderia sp. Ch1-1]
Length = 417
Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/415 (78%), Positives = 377/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAETKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YVMAIEKLL I +P+RAQYIRVMFDEITR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVMAIEKLLGIDVPVRAQYIRVMFDEITRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S IRN KA
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNAKALS 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NENRQGSLLDFI+DF RFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL++G TG
Sbjct: 183 RMNENRQGSLLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALNLGMTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG++WDLRKKQPYE+Y+ L+FDIP+G NGD YDRYLVR+EEMRQS +I+KQCI+W
Sbjct: 243 AMLRGSGIEWDLRKKQPYEVYDKLDFDIPVGVNGDCYDRYLVRVEEMRQSTRIVKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+ +N+K+ P+R+ MKSNME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVMVDNHKVAPPSRVGMKSNMEELIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYL+SDGANKPYR+KIR+PG+AHL +L EM GHMI+D VTIIGTQDIVFGE+DR
Sbjct: 363 IYLISDGANKPYRLKIRAPGYAHLSTLDEMARGHMIADAVTIIGTQDIVFGEVDR 417
>gi|300691028|ref|YP_003752023.1| NADH-ubiquinone oxidoreductase subunit D [Ralstonia solanacearum
PSI07]
gi|299078088|emb|CBJ50731.1| NADH-ubiquinone oxidoreductase subunit D [Ralstonia solanacearum
PSI07]
gi|344169639|emb|CCA81998.1| NADH-ubiquinone oxidoreductase subunit D [blood disease bacterium
R229]
gi|344171811|emb|CCA84433.1| NADH-ubiquinone oxidoreductase subunit D [Ralstonia syzygii R24]
Length = 417
Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/415 (77%), Positives = 380/415 (91%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAEQ+T++Q++PY
Sbjct: 3 DIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTWIQNVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIE+LL I++P+RAQYIRVMFDEITR++NHLMWIGSH+LD+G
Sbjct: 63 MDRLDYVSMMVNEHAYVMAIERLLGIEVPLRAQYIRVMFDEITRIMNHLMWIGSHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S +RN KA
Sbjct: 123 AMAVFLYAFREREDLFDMYEAVSGARMHAAYYRPGGVYRDLPDSMPQYKASKVRNEKALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE R GSLLDFIE FT+RFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL GFTG
Sbjct: 183 ALNETRSGSLLDFIEAFTDRFPKYVDEYETLLTDNRIWKQRLVGIGVVSPERALQKGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG++WD+RKKQPYE+Y+ ++FDIP+G NGD YDRYLVR+EEMRQSN+I++QC++W
Sbjct: 243 PMLRGSGIEWDVRKKQPYEVYDRVDFDIPVGVNGDCYDRYLVRVEEMRQSNRIVRQCVEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N+GPVI++N+K+ P+R++MK+NME+LIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNQGPVITDNHKVAPPSRVDMKTNMEELIHHFKLFTEGMHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY++SDGANKPYR+KIR+PGF HL +L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYVISDGANKPYRLKIRAPGFVHLAALDEMAKGHMIADAVTIIGTQDIVFGEIDR 417
>gi|187929290|ref|YP_001899777.1| NADH dehydrogenase subunit D [Ralstonia pickettii 12J]
gi|229891298|sp|B2U7Q8.1|NUOD_RALPJ RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|187726180|gb|ACD27345.1| NADH dehydrogenase I, D subunit [Ralstonia pickettii 12J]
Length = 417
Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/415 (78%), Positives = 379/415 (91%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAEQ+T++QS+PY
Sbjct: 3 DIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTWIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIE+LL +++P+RAQYIRVMFDEITR++NHLMWIGSH+LD+G
Sbjct: 63 MDRLDYVSMMVNEHAYVMAIERLLGLEVPLRAQYIRVMFDEITRIMNHLMWIGSHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S +RN KA
Sbjct: 123 AMAVFLYAFREREDLFDMYEAVSGARMHAAYYRPGGVYRDLPDTMPQYKASKVRNEKALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN+ R GSLLDFIEDFTNRFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL+ GF+G
Sbjct: 183 ALNQTRSGSLLDFIEDFTNRFPKYVDEYETLLTDNRIWKQRLVGIGVVSPERALNKGFSG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG++WD+RKKQPYE+Y+ ++FDIP+G NGD YDRYLVR+EEMRQSN+II+QCI+W
Sbjct: 243 AMLRGSGIEWDVRKKQPYEVYDRIDFDIPVGVNGDCYDRYLVRVEEMRQSNRIIRQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+K+ P+R++MK+NME+LIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVITDNHKVAPPSRVDMKTNMEELIHHFKLFTEGMHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY +SDGANKPYR+KIR+PGF HL +L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYAISDGANKPYRLKIRAPGFVHLAALDEMAKGHMIADAVTIIGTQDIVFGEIDR 417
>gi|209518512|ref|ZP_03267333.1| NADH dehydrogenase I, D subunit [Burkholderia sp. H160]
gi|209501057|gb|EEA01092.1| NADH dehydrogenase I, D subunit [Burkholderia sp. H160]
Length = 417
Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/415 (78%), Positives = 377/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEGKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIEKLL I +P+RAQYIRV+FDE+TR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVLAIEKLLGIDVPVRAQYIRVLFDEVTRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S IRN KA
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNAKALS 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NENRQGSLLDFI+DF RFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL +G TG
Sbjct: 183 KMNENRQGSLLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQLGMTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WDLRKKQPYE+Y+ L+FDIP+G NGD YDRYLVR+EEMRQS++I KQCI+W
Sbjct: 243 AMLRGSGVEWDLRKKQPYEVYDKLDFDIPVGVNGDCYDRYLVRVEEMRQSSRIAKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+++N+K+ P+R+ MKSNMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVMTDNHKVAPPSRVGMKSNMEDLIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYL+SDGANKPYR+KIR+PG+AHL SL EM GHMI+D VTIIGTQDIVFGE+DR
Sbjct: 363 IYLISDGANKPYRLKIRAPGYAHLSSLDEMARGHMIADAVTIIGTQDIVFGEVDR 417
>gi|91782615|ref|YP_557821.1| NADH dehydrogenase subunit D [Burkholderia xenovorans LB400]
gi|122970575|sp|Q142H0.1|NUOD_BURXL RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|91686569|gb|ABE29769.1| NADH dehydrogenase subunit D [Burkholderia xenovorans LB400]
Length = 417
Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/415 (78%), Positives = 377/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAETKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YVMAIEKLL I +P+RAQYIRVMFDEITR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVMAIEKLLGIDVPVRAQYIRVMFDEITRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S IRN KA
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNAKALS 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NENRQGSLLDFI+DF RFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL++G TG
Sbjct: 183 KMNENRQGSLLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALNLGMTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG++WDLRKKQPYE+Y+ L+FDIP+G NGD YDRYLVR+EEMRQS +I+KQC++W
Sbjct: 243 AMLRGSGIEWDLRKKQPYEVYDKLDFDIPVGVNGDCYDRYLVRVEEMRQSTRIVKQCVEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+ +N+K+ P+R+ MKSNME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVMIDNHKVAPPSRVGMKSNMEELIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYL+SDGANKPYR+KIR+PG+AHL +L EM GHMI+D VTIIGTQDIVFGE+DR
Sbjct: 363 IYLISDGANKPYRLKIRAPGYAHLSTLDEMARGHMIADAVTIIGTQDIVFGEVDR 417
>gi|445498172|ref|ZP_21465027.1| NADH-quinone oxidoreductase subunit D [Janthinobacterium sp. HH01]
gi|444788167|gb|ELX09715.1| NADH-quinone oxidoreductase subunit D [Janthinobacterium sp. HH01]
Length = 417
Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/415 (78%), Positives = 377/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHR TEKLAEQ+TYLQS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAEQKTYLQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIEKLL +++P+RAQYIRVMFDEITR+LNHLMW+G+H+LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEKLLGLEVPLRAQYIRVMFDEITRILNHLMWLGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AMG LY FR+REDL DCYEAVSGARMHAAYYRPGGVYRDLP+ MPQ+K SIIR+ KA
Sbjct: 123 AMGPFLYCFRDREDLFDCYEAVSGARMHAAYYRPGGVYRDLPDAMPQHKPSIIRSAKAVA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE+RQGSLLDFIE FT RFP +DEYETLLTDNRIWKQR VGIGVV+PE AL+MGFTG
Sbjct: 183 GLNEHRQGSLLDFIEAFTGRFPTYVDEYETLLTDNRIWKQRTVGIGVVAPEDALAMGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG++WDLRK QPYE+Y+L++FD+PIG NGD YDRYLVR+EE+RQSNKIIKQC++W
Sbjct: 243 AMLRGSGIQWDLRKHQPYEVYDLMDFDVPIGTNGDCYDRYLVRVEELRQSNKIIKQCVEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPV+++N K+ P R++MK+NME LIHHFKLFTEGF+VP GE YS VEHPKGEFG
Sbjct: 303 LRNNPGPVMTDNRKVAPPGRVDMKTNMESLIHHFKLFTEGFHVPPGEAYSAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYL+SDGANKPYR+K+R+P +AHLQSL EM GHMI+D VTIIGTQDIVFG IDR
Sbjct: 363 IYLISDGANKPYRMKLRAPDYAHLQSLDEMARGHMIADAVTIIGTQDIVFGSIDR 417
>gi|421891464|ref|ZP_16322264.1| NADH-ubiquinone oxidoreductase subunit D [Ralstonia solanacearum
K60-1]
gi|378963137|emb|CCF99012.1| NADH-ubiquinone oxidoreductase subunit D [Ralstonia solanacearum
K60-1]
Length = 417
Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/415 (77%), Positives = 378/415 (91%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAEQ+T++QS+PY
Sbjct: 3 DIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTWIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIE+LL +++P+RAQYIRVMFDEITR++NHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHAYVMAIERLLGVEVPLRAQYIRVMFDEITRIMNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL D YEAVSGARMHAAYYRPGGVYRDLP+ MP++K+S +RN KA
Sbjct: 123 AMAVFLYAFREREDLFDMYEAVSGARMHAAYYRPGGVYRDLPDTMPKFKASKVRNEKALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE R GSLLDFIE FT+RFPK +DEYETLLTDNRIWKQRLVGIGVV+PERAL G TG
Sbjct: 183 ALNETRSGSLLDFIEAFTDRFPKYVDEYETLLTDNRIWKQRLVGIGVVTPERALQKGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WD+RKKQPYE+Y+ ++FDIP+G NGDSYDRYLVR+EEMRQSN+II+QCI W
Sbjct: 243 PMLRGSGIAWDVRKKQPYEVYDRVDFDIPVGVNGDSYDRYLVRVEEMRQSNRIIRQCIDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+K+ P+R++MK+NME+LIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNTGPVITDNHKVAPPSRVDMKTNMEELIHHFKLFTEGMHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY++SDGANKPYR+KIR+PGFAHL +L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYVISDGANKPYRLKIRAPGFAHLAALDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>gi|113867073|ref|YP_725562.1| NADH dehydrogenase subunit D [Ralstonia eutropha H16]
gi|122947020|sp|Q0KCS7.1|NUOD_RALEH RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|113525849|emb|CAJ92194.1| NADH dehydrogenase chain D [Ralstonia eutropha H16]
Length = 417
Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/415 (78%), Positives = 377/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAEQ+T++QS+PY
Sbjct: 3 DIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTWIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIE+LL +++P+RAQYIRVMFDEITRLLNHLMWIGSH+LD+G
Sbjct: 63 MDRLDYVSMMVNEHAYVMAIERLLGLEVPVRAQYIRVMFDEITRLLNHLMWIGSHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFRERED+ D YEAVSGARMHAAYYRPGGVYRDLP+ MPQY++S + N +A K
Sbjct: 123 AMAVFLYAFREREDMFDMYEAVSGARMHAAYYRPGGVYRDLPDTMPQYRASKVHNERAIK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R GSLLDFIEDFTNRFPK +DEYETLLTDNRIWKQRLV IGVVSPERAL MGFTG
Sbjct: 183 AMNEARSGSLLDFIEDFTNRFPKYVDEYETLLTDNRIWKQRLVDIGVVSPERALQMGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG++WDLRKKQPYE+Y+ L+FD+P+G GD Y RYLVR+EEMRQSN+II+QC++W
Sbjct: 243 PMLRGSGIEWDLRKKQPYEVYDKLDFDVPVGVGGDCYARYLVRVEEMRQSNRIIRQCVEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+K+ P+R++MKSNME+LIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 303 LRRNPGPVITDNHKVAPPSRVDMKSNMEELIHHFKLFTEGMHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY +SDGANKPYR+KIR+PGF HL +L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYAISDGANKPYRLKIRAPGFPHLAALDEMAKGHMIADAVTIIGTQDIVFGEIDR 417
>gi|295676040|ref|YP_003604564.1| NADH dehydrogenase I subunit D [Burkholderia sp. CCGE1002]
gi|295435883|gb|ADG15053.1| NADH dehydrogenase I, D subunit [Burkholderia sp. CCGE1002]
Length = 417
Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/415 (78%), Positives = 376/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIEKLL I +P+RAQYIRV+FDE+TR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMANEHGYVLAIEKLLGIDVPLRAQYIRVLFDEVTRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S IRN KA
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNAKALS 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NENRQGSLLDFI+DF RFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL +G TG
Sbjct: 183 KMNENRQGSLLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQLGMTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WDLRKKQPYE+Y+ L+FDIP+G NGD YDRYLVR+EEMRQS +I KQCI+W
Sbjct: 243 AMLRGSGVEWDLRKKQPYEVYDKLDFDIPVGVNGDCYDRYLVRVEEMRQSCRIAKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+++N+K+ P+R+ MKSNMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVMTDNHKVAPPSRVGMKSNMEDLIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYL+SDGANKPYR+KIR+PG+AHL SL EM GHMI+D VTIIGTQDIVFGE+DR
Sbjct: 363 IYLISDGANKPYRLKIRAPGYAHLSSLDEMARGHMIADAVTIIGTQDIVFGEVDR 417
>gi|83746300|ref|ZP_00943353.1| Hypothetical Protein RRSL_03893 [Ralstonia solanacearum UW551]
gi|207742738|ref|YP_002259130.1| nadh dehydrogenaseI(chain d) protein [Ralstonia solanacearum
IPO1609]
gi|421897875|ref|ZP_16328242.1| nadh dehydrogenaseI(chain d) protein [Ralstonia solanacearum MolK2]
gi|83727050|gb|EAP74175.1| Hypothetical Protein RRSL_03893 [Ralstonia solanacearum UW551]
gi|206589081|emb|CAQ36043.1| nadh dehydrogenaseI(chain d) protein [Ralstonia solanacearum MolK2]
gi|206594132|emb|CAQ61059.1| nadh dehydrogenaseI(chain d) protein [Ralstonia solanacearum
IPO1609]
Length = 417
Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/415 (77%), Positives = 379/415 (91%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAEQ+T++QS+PY
Sbjct: 3 DIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTWIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIE+L+ +++P+RAQYIRVMFDEITR++NHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHAYVMAIERLIGVEVPLRAQYIRVMFDEITRIMNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL D YEAVSGARMHAAYYRPGGVYRDLP+ MP++K+S +RN KA
Sbjct: 123 AMAVFLYAFREREDLFDMYEAVSGARMHAAYYRPGGVYRDLPDTMPKFKASKVRNEKALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE R GSLLDFIE FT+RFPK +DEYETLLTDNRIWKQRLVGIGVV+PERAL G TG
Sbjct: 183 ALNETRSGSLLDFIEAFTDRFPKYVDEYETLLTDNRIWKQRLVGIGVVTPERALQKGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WD+RKKQPYE+Y+ ++FDIP+G NGDSYDRYLVR+EEMRQSN+II+QCI W
Sbjct: 243 PMLRGSGIAWDVRKKQPYEVYDRVDFDIPVGVNGDSYDRYLVRVEEMRQSNRIIRQCIDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N+GPVI++N+K+ P+R++MK+NME+LIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNQGPVITDNHKVAPPSRVDMKTNMEELIHHFKLFTEGMHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY++SDGANKPYR+KIR+PGFAHL +L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYVISDGANKPYRLKIRAPGFAHLAALDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>gi|73540667|ref|YP_295187.1| NADH dehydrogenase subunit D [Ralstonia eutropha JMP134]
gi|123625482|sp|Q473U0.1|NUOD_RALEJ RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|72118080|gb|AAZ60343.1| NADH dehydrogenase subunit D [Ralstonia eutropha JMP134]
Length = 417
Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/415 (78%), Positives = 377/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAEQ++++Q++PY
Sbjct: 3 DIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKSWIQNVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIE+LL I++PIRAQYIRVMFDEITRLLNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMSNEHAYVMAIERLLGIEVPIRAQYIRVMFDEITRLLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFRERED+ D YEAVSGARMHAAYYRPGGVYRDLP+ MPQY++S + N +A K
Sbjct: 123 AMAVFLYAFREREDMFDMYEAVSGARMHAAYYRPGGVYRDLPDTMPQYRASKVHNERAIK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
++NE R GSLLDFIEDFTNRFPK +DEYETLLTDNRIWKQRLV IGVVSPERAL MGFTG
Sbjct: 183 VMNEARSGSLLDFIEDFTNRFPKYVDEYETLLTDNRIWKQRLVDIGVVSPERALQMGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPYE+Y+ ++FD+P+G GD Y RYLVR+EEMRQSN+IIKQCI+W
Sbjct: 243 PMLRGSGIAWDLRKKQPYEVYDKMDFDVPVGVGGDCYARYLVRVEEMRQSNRIIKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+K+ P+R++MKSNME+LIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 303 LRRNPGPVITDNHKVAPPSRVDMKSNMEELIHHFKLFTEGMHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY +SDGANKPYR+KIR+PGF HL +L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYAISDGANKPYRLKIRAPGFPHLAALDEMAKGHMIADAVTIIGTQDIVFGEIDR 417
>gi|170696396|ref|ZP_02887525.1| NADH dehydrogenase I, D subunit [Burkholderia graminis C4D1M]
gi|170138724|gb|EDT06923.1| NADH dehydrogenase I, D subunit [Burkholderia graminis C4D1M]
Length = 417
Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/415 (78%), Positives = 375/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAETKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YVMAIEKLL I +P+RAQYIRVMFDE+TR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVMAIEKLLGIDVPVRAQYIRVMFDEVTRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S IRN KA
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNAKALS 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NENRQGSLLDFI+DF RFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL MG +G
Sbjct: 183 RMNENRQGSLLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQMGMSG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG++WDLRKKQPYE+Y L+FDIP+G NGD YDRYLVR+EEMRQS +I+KQCI+W
Sbjct: 243 AMLRGSGIEWDLRKKQPYEVYEKLDFDIPVGVNGDCYDRYLVRVEEMRQSTRIVKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+ +N+K+ P+R+ MKSNME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVMIDNHKVAPPSRVGMKSNMEELIHHFKLFTEGFHVPEGESYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYL+SDGANKPYR+KIR+PG+AHL +L EM GHMI+D VTIIGTQDIVFGE+DR
Sbjct: 363 IYLISDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEVDR 417
>gi|323525439|ref|YP_004227592.1| NADH dehydrogenase I subunit D [Burkholderia sp. CCGE1001]
gi|407712810|ref|YP_006833375.1| NADH-quinone oxidoreductase subunit D [Burkholderia phenoliruptrix
BR3459a]
gi|323382441|gb|ADX54532.1| NADH dehydrogenase I, D subunit [Burkholderia sp. CCGE1001]
gi|407234994|gb|AFT85193.1| NADH-quinone oxidoreductase subunit D [Burkholderia phenoliruptrix
BR3459a]
Length = 417
Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/415 (78%), Positives = 375/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAETKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YVMAIEKLL I++P+RAQYIRVMFDEITR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVMAIEKLLGIEVPVRAQYIRVMFDEITRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S IRN KA
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNAKALS 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NENRQGSLLDFI+DF RFP +DEYETLLTDNRIWKQRLVGIGVVSPERAL +G +G
Sbjct: 183 KMNENRQGSLLDFIDDFFTRFPTYVDEYETLLTDNRIWKQRLVGIGVVSPERALQLGMSG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WDLRKKQPYE+Y L+FDIP+G NGD YDRYLVR+EEMRQS +I+KQCI+W
Sbjct: 243 AMLRGSGVEWDLRKKQPYEVYEKLDFDIPVGVNGDCYDRYLVRVEEMRQSTRIVKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+ +N+K+ P+R+ MKSNME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVMIDNHKVAPPSRVGMKSNMEELIHHFKLFTEGFHVPEGETYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYL+SDGANKPYR+KIR+PG+AHL +L EM GHMI+D VTIIGTQDIVFGE+DR
Sbjct: 363 IYLISDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEVDR 417
>gi|413958289|ref|ZP_11397528.1| NADH dehydrogenase subunit D [Burkholderia sp. SJ98]
gi|413940869|gb|EKS72829.1| NADH dehydrogenase subunit D [Burkholderia sp. SJ98]
Length = 417
Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/415 (79%), Positives = 374/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T+LQS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAETKTFLQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIEKLL I +PIRA+YIRV+FDEITR+LNHLMWIGSH+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVLAIEKLLGIDVPIRAKYIRVLFDEITRVLNHLMWIGSHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S IRN KA
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNAKALD 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NENRQGSLLDFIEDF NRFP +DEYETLLTDNRIWKQRLVGIGVVSPERAL MG +G
Sbjct: 183 KMNENRQGSLLDFIEDFFNRFPGCVDEYETLLTDNRIWKQRLVGIGVVSPERALQMGLSG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG++WDLRKKQPYE+Y+ L+FDIP+G NGD YDRYLVR+EEMRQS +I KQCI W
Sbjct: 243 AMLRGSGIEWDLRKKQPYEVYDQLDFDIPVGVNGDCYDRYLVRVEEMRQSTRIAKQCIAW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+ +N+K+ P+R+ MKSNME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVMVDNHKVAPPSRVGMKSNMEELIHHFKLFTEGFHVPEGETYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYL+SDGANKPYR+KIR+PG+AHL +L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLISDGANKPYRLKIRAPGYAHLAALDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>gi|91776410|ref|YP_546166.1| NADH dehydrogenase subunit D [Methylobacillus flagellatus KT]
gi|123380392|sp|Q1GZL2.1|NUOD_METFK RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|91710397|gb|ABE50325.1| NADH dehydrogenase subunit D [Methylobacillus flagellatus KT]
Length = 417
Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/415 (79%), Positives = 372/415 (89%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHR TEKLAE RTYLQS+PY
Sbjct: 3 EIRNYTMNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAENRTYLQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIEKLL +++P+RAQYIRVMFDEITR+LNHL+W+G+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHAYVMAIEKLLGLEVPLRAQYIRVMFDEITRILNHLLWLGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL DCYEAVSGARMHAAYYRPGGVYRDLP+ MPQY+ S +R+ + K
Sbjct: 123 AMTVFLYAFREREDLFDCYEAVSGARMHAAYYRPGGVYRDLPDRMPQYEESTVRSKEDVK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNENRQGSLLDFIEDFTNRFP +DEYETLLTDNRIWKQR VGIGVVSPERA+++G TG
Sbjct: 183 QLNENRQGSLLDFIEDFTNRFPAYVDEYETLLTDNRIWKQRTVGIGVVSPERAMALGMTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV WDLRKKQPYE+Y+ L+FDIPIG NGD YDRYLVRIEE RQSN+IIKQCI W
Sbjct: 243 PMLRGSGVAWDLRKKQPYEVYDRLDFDIPIGVNGDCYDRYLVRIEEFRQSNRIIKQCIDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVIS+N K+ P R MK +ME LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVISDNTKVAPPPREEMKHDMEALIHHFKLFTEGFHVPAGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYL+SDGANKPYR+KIR+PGFAHL +L EM GHMI+D+V IIGTQDIVFGEIDR
Sbjct: 363 IYLISDGANKPYRLKIRAPGFAHLAALDEMTRGHMIADLVAIIGTQDIVFGEIDR 417
>gi|339325140|ref|YP_004684833.1| NADH-quinone oxidoreductase subunit D [Cupriavidus necator N-1]
gi|338165297|gb|AEI76352.1| NADH-quinone oxidoreductase subunit D [Cupriavidus necator N-1]
Length = 417
Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/415 (78%), Positives = 376/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAEQ+T++Q++PY
Sbjct: 3 DIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTWIQNVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIE+LL +++P+RAQYIRVMFDEITRLLNHLMWIGSH+LD+G
Sbjct: 63 MDRLDYVSMMVNEHAYVMAIERLLGLEVPVRAQYIRVMFDEITRLLNHLMWIGSHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFRERED+ D YEAVSGARMHAAYYRPGGVYRDLP+ MPQY++S + N +A K
Sbjct: 123 AMAVFLYAFREREDMFDMYEAVSGARMHAAYYRPGGVYRDLPDTMPQYRASKVHNERAIK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R GSLLDFIEDFTNRFPK +DEYETLLTDNRIWKQRLV IGVVSPERAL MGFTG
Sbjct: 183 AMNEARSGSLLDFIEDFTNRFPKYVDEYETLLTDNRIWKQRLVDIGVVSPERALQMGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG++WDLRKKQPYE+Y+ L+FDIP+G GD Y RYLVR+EEMRQSN+IIKQC++W
Sbjct: 243 PMLRGSGIEWDLRKKQPYEVYDKLDFDIPVGVGGDCYARYLVRVEEMRQSNRIIKQCVEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI+ N+K+ P+R++MKSNME+LIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 303 LRRNPGPVITENHKVAPPSRVDMKSNMEELIHHFKLFTEGMHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY +SDGANKPYR+KIR+PGF HL +L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYAISDGANKPYRLKIRAPGFPHLAALDEMAKGHMIADAVTIIGTQDIVFGEIDR 417
>gi|307730337|ref|YP_003907561.1| NADH dehydrogenase I subunit D [Burkholderia sp. CCGE1003]
gi|307584872|gb|ADN58270.1| NADH dehydrogenase I, D subunit [Burkholderia sp. CCGE1003]
Length = 417
Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/415 (78%), Positives = 375/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAETKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YVMAIEKLL I++P+RAQYIRVMFDEITR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVMAIEKLLGIEVPVRAQYIRVMFDEITRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S IRN KA
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNAKALS 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NENRQGSLLDFI+DF RFP +DEYETLLTDNRIWKQRLVGIGVVSPERAL +G +G
Sbjct: 183 KMNENRQGSLLDFIDDFFTRFPTYVDEYETLLTDNRIWKQRLVGIGVVSPERALQLGMSG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG++WDLRKKQPYE+Y L+FDIP+G NGD YDRYLVR+EEMRQS +I+KQC++W
Sbjct: 243 AMLRGSGIEWDLRKKQPYEVYEKLDFDIPVGVNGDCYDRYLVRVEEMRQSTRIVKQCVEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+ +N+K+ P+R+ MKSNME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVMIDNHKVAPPSRVGMKSNMEELIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PG+AHL +L EM GHMI+D VTIIGTQDIVFGE+DR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEVDR 417
>gi|167585974|ref|ZP_02378362.1| NADH dehydrogenase subunit D [Burkholderia ubonensis Bu]
Length = 417
Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/415 (79%), Positives = 374/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 DIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIEKLL I +P RAQYIRV+FDEITR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVLAIEKLLGIDVPERAQYIRVLFDEITRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S IRN KA
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNEKALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE RQGS+LDFI+DF RFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL MG TG
Sbjct: 183 KMNEARQGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQMGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPYE+Y+ L+FDIP+G NGD YDRYLVR+EEMRQS +I KQCI+W
Sbjct: 243 PMLRGSGIAWDLRKKQPYEVYDRLDFDIPVGVNGDCYDRYLVRVEEMRQSVRIAKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+++N+K+ P+R+ MK+NMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVMTDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL SL EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>gi|253998386|ref|YP_003050449.1| NADH dehydrogenase subunit D [Methylovorus glucosetrophus SIP3-4]
gi|313200462|ref|YP_004039120.1| NADH dehydrogenase i subunit D [Methylovorus sp. MP688]
gi|253985065|gb|ACT49922.1| NADH dehydrogenase I, D subunit [Methylovorus glucosetrophus
SIP3-4]
gi|312439778|gb|ADQ83884.1| NADH dehydrogenase I, D subunit [Methylovorus sp. MP688]
Length = 417
Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/415 (79%), Positives = 372/415 (89%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE RTYLQS+PY
Sbjct: 3 EIRNYTMNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAENRTYLQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIEKLL +++PIRAQYIRVMFDEITR+LNHL+W+G+H+LD+G
Sbjct: 63 MDRLDYVSMMANEHAYVMAIEKLLGLEVPIRAQYIRVMFDEITRVLNHLLWLGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL DCYEAVSGARMHAAYYRPGGVYRDLP MPQY+SS +R K
Sbjct: 123 AMTVFLYAFREREDLFDCYEAVSGARMHAAYYRPGGVYRDLPARMPQYESSTVRAKDEIK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNENRQGSLLDFIEDFTNRFP +DEYETLLTDNRIWKQR VGIGVV+PERAL++G +G
Sbjct: 183 RLNENRQGSLLDFIEDFTNRFPGYVDEYETLLTDNRIWKQRTVGIGVVTPERALALGLSG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG WDLRKKQPYE+Y+ ++FDIP+G NGD YDRYLVRIEEMRQSN+IIKQCI W
Sbjct: 243 PMLRGSGFAWDLRKKQPYEVYDKMDFDIPVGVNGDCYDRYLVRIEEMRQSNRIIKQCIDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+K+ PAR MK +ME LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVITDNHKVAPPAREGMKQDMESLIHHFKLFTEGFHVPAGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYL+SDGANKPYR+KIR+PGF HL +L EM GHMI+D+V IIGTQDIVFGEIDR
Sbjct: 363 IYLISDGANKPYRLKIRAPGFPHLAALDEMTRGHMIADLVAIIGTQDIVFGEIDR 417
>gi|74317163|ref|YP_314903.1| NADH dehydrogenase subunit D [Thiobacillus denitrificans ATCC
25259]
gi|123611998|sp|Q3SJQ4.1|NUOD_THIDA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|74056658|gb|AAZ97098.1| NADH dehydrogenase I chain D [Thiobacillus denitrificans ATCC
25259]
Length = 417
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/415 (77%), Positives = 375/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T+LQ+LPY
Sbjct: 3 EIRNYTMNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEHKTFLQALPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIEKLL I++P RAQYIRVMFDEITR+LNHL+W+G+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHAYVMAIEKLLGIEVPERAQYIRVMFDEITRVLNHLLWLGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+DCYEAVSGARMHAAYYRPGGVYRDLP+ MPQY++ RN K
Sbjct: 123 AMTVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDRMPQYQAQHTRNESTMK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+N NRQGSLLDFIEDFT RFP +DEYETLLTDNRIWKQR VGIGVV+PERAL++GFTG
Sbjct: 183 SMNANRQGSLLDFIEDFTTRFPAYVDEYETLLTDNRIWKQRTVGIGVVAPERALALGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV+WDLRKKQPYE+Y ++FDIP+G NGD YDRYLVRIEEMRQSN+II+QC+ W
Sbjct: 243 PMLRGSGVEWDLRKKQPYEVYERMDFDIPVGTNGDCYDRYLVRIEEMRQSNRIIRQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GP++ +N+K++ P R++MK NME+LIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPIMVDNHKVSPPPRVDMKQNMEELIHHFKLFTEGMHVPAGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL++L EM GHMI+DVV IIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRMKIRAPGFAHLEALDEMSRGHMIADVVAIIGTQDIVFGEIDR 417
>gi|161524207|ref|YP_001579219.1| NADH dehydrogenase subunit D [Burkholderia multivorans ATCC 17616]
gi|189351036|ref|YP_001946664.1| NADH dehydrogenase subunit D [Burkholderia multivorans ATCC 17616]
gi|221199659|ref|ZP_03572703.1| NADH-quinone oxidoreductase, D subunit [Burkholderia multivorans
CGD2M]
gi|221205441|ref|ZP_03578456.1| NADH-quinone oxidoreductase, D subunit [Burkholderia multivorans
CGD2]
gi|221211738|ref|ZP_03584717.1| NADH-quinone oxidoreductase, D subunit [Burkholderia multivorans
CGD1]
gi|421469606|ref|ZP_15918053.1| NADH dehydrogenase subunit D [Burkholderia multivorans ATCC
BAA-247]
gi|421478360|ref|ZP_15926123.1| NADH dehydrogenase subunit D [Burkholderia multivorans CF2]
gi|229891273|sp|A9AFZ0.1|NUOD_BURM1 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|160341636|gb|ABX14722.1| NADH dehydrogenase I, D subunit [Burkholderia multivorans ATCC
17616]
gi|189335058|dbj|BAG44128.1| NADH dehydrogenase I chain D [Burkholderia multivorans ATCC 17616]
gi|221169099|gb|EEE01567.1| NADH-quinone oxidoreductase, D subunit [Burkholderia multivorans
CGD1]
gi|221174279|gb|EEE06711.1| NADH-quinone oxidoreductase, D subunit [Burkholderia multivorans
CGD2]
gi|221180944|gb|EEE13347.1| NADH-quinone oxidoreductase, D subunit [Burkholderia multivorans
CGD2M]
gi|400224953|gb|EJO55148.1| NADH dehydrogenase subunit D [Burkholderia multivorans CF2]
gi|400229457|gb|EJO59305.1| NADH dehydrogenase subunit D [Burkholderia multivorans ATCC
BAA-247]
Length = 417
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/415 (78%), Positives = 373/415 (89%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAENKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIEKLL I +P RAQYIRV+FDEITR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVLAIEKLLGIAVPERAQYIRVLFDEITRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S IRN KA
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNEKALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R GS+LDFI+DF RFPK IDEYETLLTDNRIWKQRLVGIGVVSPERAL MG TG
Sbjct: 183 KMNEARSGSVLDFIDDFFTRFPKCIDEYETLLTDNRIWKQRLVGIGVVSPERALQMGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPYE+Y+ ++FD+P+G NGD YDRYLVR+EEMRQS +I KQCI+W
Sbjct: 243 PMLRGSGIAWDLRKKQPYEVYDRMDFDVPVGVNGDCYDRYLVRVEEMRQSVRIAKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+++N+K+ P+R+ MK+NMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVMTDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL SL EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>gi|393776301|ref|ZP_10364597.1| NADH dehydrogenase subunit D [Ralstonia sp. PBA]
gi|392716690|gb|EIZ04268.1| NADH dehydrogenase subunit D [Ralstonia sp. PBA]
Length = 417
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/415 (78%), Positives = 374/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 DIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEHKTWIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIEKLL I +PIRAQYIRVMFDEITRL+NHL+WIG H LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEKLLGIDVPIRAQYIRVMFDEITRLMNHLLWIGCHGLDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL D YEAVSGARMHAAYYRPGGVYRDLP+ MPQ+K S +RN +A K
Sbjct: 123 AMAVFLYAFREREDLFDMYEAVSGARMHAAYYRPGGVYRDLPDTMPQFKPSKVRNERAMK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE RQGSLLDFIE FT+RFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL MGFTG
Sbjct: 183 EMNETRQGSLLDFIEAFTDRFPKYVDEYETLLTDNRIWKQRLVGIGVVSPERALQMGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG++WDLR+KQPYE+Y+ L+FDIP+G NGD YDRYLVR+EEMRQSN+II+QCI W
Sbjct: 243 AMLRGSGIEWDLRRKQPYEVYDKLDFDIPVGVNGDCYDRYLVRVEEMRQSNRIIRQCIDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVIS+N+K+ P+R++MK+NME+LIHHFKL TEG +VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVISDNHKVAPPSRVDMKTNMEELIHHFKLATEGIHVPEGETYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY +SDGANKPYR+KIR+PGF HL +L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYAISDGANKPYRLKIRAPGFVHLAALDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>gi|300703645|ref|YP_003745247.1| NADH-ubiquinone oxidoreductase subunit D [Ralstonia solanacearum
CFBP2957]
gi|299071308|emb|CBJ42626.1| NADH-ubiquinone oxidoreductase subunit D [Ralstonia solanacearum
CFBP2957]
Length = 417
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/415 (77%), Positives = 378/415 (91%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAEQ+T++QS+PY
Sbjct: 3 DIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTWIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIE+LL +++P+RAQYIRVMFDEITR++NHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHAYVMAIERLLGVEVPLRAQYIRVMFDEITRIMNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL D YEAVSGARMHAAYYRPGGVYRDLP+ MP++K+S +RN KA
Sbjct: 123 AMAVFLYAFREREDLFDMYEAVSGARMHAAYYRPGGVYRDLPDTMPKFKASKVRNEKALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE R GSLLDFIE FT+RFPK +DEYETLLTDNRIWKQRLVGIGVV+PERAL G TG
Sbjct: 183 ALNETRSGSLLDFIEAFTDRFPKYVDEYETLLTDNRIWKQRLVGIGVVTPERALQKGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WD+RKKQPYE+Y+ ++FDIP+G +GDSYDRYLVR+EEMRQSN+I++QCI W
Sbjct: 243 PMLRGSGIAWDVRKKQPYEVYDRVDFDIPVGVHGDSYDRYLVRVEEMRQSNRIVRQCIDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+K+ P+R++MK+NME+LIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVITDNHKVAPPSRVDMKTNMEELIHHFKLFTEGMHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY++SDGANKPYR+KIR+PGFAHL +L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYVISDGANKPYRLKIRAPGFAHLAALDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>gi|30249734|ref|NP_841804.1| NADH dehydrogenase subunit D [Nitrosomonas europaea ATCC 19718]
gi|75540324|sp|Q82TU6.1|NUOD_NITEU RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|30180771|emb|CAD85685.1| NADH-ubiquinone oxidoreductase 49Kd chain [Nitrosomonas europaea
ATCC 19718]
Length = 417
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/415 (78%), Positives = 377/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRL++EL+GEV+R+ADPHIGLLHRATEKLAE +TY+QS+PY
Sbjct: 3 EIRNYTMNFGPQHPAAHGVLRLVMELDGEVIRRADPHIGLLHRATEKLAENKTYVQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIEKLL I++PIRAQYIRVMFDEITR+LNHL+W+G+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHAYVMAIEKLLQIEVPIRAQYIRVMFDEITRILNHLLWLGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+DCYEAVSGAR+HAAYYRPGGVYRDLP+ MPQY+ S I + KAT+
Sbjct: 123 AMTVFLYAFREREDLMDCYEAVSGARLHAAYYRPGGVYRDLPDNMPQYQPSAIHDEKATR 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
NENRQGSLLDFIEDFT RFP ID+YE LLTDNRIWKQRLV IGVVSP+RA ++GFTG
Sbjct: 183 ARNENRQGSLLDFIEDFTRRFPGYIDDYEALLTDNRIWKQRLVDIGVVSPDRAKALGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV+WDLRKKQPYE+Y+ ++FDIP+G NGD YDRYLVRIEEMRQSN IIKQC++W
Sbjct: 243 PMLRGSGVEWDLRKKQPYEVYDQVDFDIPVGANGDCYDRYLVRIEEMRQSNHIIKQCVEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+K+ P+R+ MK NME++IHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVITDNHKVAPPSRLAMKQNMEEMIHHFKLFTEGMHVPRGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY+VSDGANKPYR+KIR+PGFAHL +L EM GHMI+D+V IIGTQDIVFGEIDR
Sbjct: 363 IYIVSDGANKPYRLKIRAPGFAHLAALDEMTKGHMIADLVAIIGTQDIVFGEIDR 417
>gi|416974642|ref|ZP_11937502.1| NADH dehydrogenase subunit D [Burkholderia sp. TJI49]
gi|325520400|gb|EGC99518.1| NADH dehydrogenase subunit D [Burkholderia sp. TJI49]
Length = 417
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/415 (78%), Positives = 373/415 (89%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIEKLL I +P RAQYIRV+FDEITR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVLAIEKLLGIDVPERAQYIRVLFDEITRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S IRN KA
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNEKALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R GS+LDFI+DF RFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL MG TG
Sbjct: 183 KMNEARSGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQMGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPYE+Y+ L+FD+P+G NGD YDRYLVR+EEMRQS +I KQCI+W
Sbjct: 243 PMLRGSGIAWDLRKKQPYEVYDRLDFDVPVGVNGDCYDRYLVRVEEMRQSIRIAKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+++N+K+ P+R+ MK+NMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVMTDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL SL EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>gi|107023185|ref|YP_621512.1| NADH dehydrogenase subunit D [Burkholderia cenocepacia AU 1054]
gi|116690267|ref|YP_835890.1| NADH dehydrogenase subunit D [Burkholderia cenocepacia HI2424]
gi|206560700|ref|YP_002231465.1| NADH dehydrogenase subunit D [Burkholderia cenocepacia J2315]
gi|254247660|ref|ZP_04940981.1| NADH dehydrogenase I, D subunit [Burkholderia cenocepacia PC184]
gi|421867932|ref|ZP_16299584.1| NADH-ubiquinone oxidoreductase chain D [Burkholderia cenocepacia
H111]
gi|444359647|ref|ZP_21160944.1| NADH dehydrogenase subunit D [Burkholderia cenocepacia BC7]
gi|444369284|ref|ZP_21169045.1| NADH dehydrogenase subunit D [Burkholderia cenocepacia
K56-2Valvano]
gi|123244857|sp|Q1BV16.1|NUOD_BURCA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|229891271|sp|A0K920.1|NUOD_BURCH RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|229891272|sp|B4E5L9.1|NUOD_BURCJ RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|105893374|gb|ABF76539.1| NADH dehydrogenase subunit D [Burkholderia cenocepacia AU 1054]
gi|116648356|gb|ABK08997.1| NADH dehydrogenase subunit D [Burkholderia cenocepacia HI2424]
gi|124872436|gb|EAY64152.1| NADH dehydrogenase I, D subunit [Burkholderia cenocepacia PC184]
gi|198036742|emb|CAR52642.1| NADH dehydrogenase I chain D [Burkholderia cenocepacia J2315]
gi|358071863|emb|CCE50462.1| NADH-ubiquinone oxidoreductase chain D [Burkholderia cenocepacia
H111]
gi|443599359|gb|ELT67648.1| NADH dehydrogenase subunit D [Burkholderia cenocepacia
K56-2Valvano]
gi|443601604|gb|ELT69741.1| NADH dehydrogenase subunit D [Burkholderia cenocepacia BC7]
Length = 417
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/415 (78%), Positives = 374/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIEKLL I++P RAQYIRV+FDEITR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVLAIEKLLGIEVPERAQYIRVLFDEITRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S IRN KA
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNEKALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R GS+LDFI+DF RFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL MG TG
Sbjct: 183 KMNEARSGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQMGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPYE+Y+ ++FD+P+G NGD YDRYLVR+EEMRQS +I KQCI+W
Sbjct: 243 PMLRGSGIAWDLRKKQPYEVYDRMDFDVPVGVNGDCYDRYLVRVEEMRQSIRIAKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+++N+K+ P+R+ MK+NMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVMTDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL SL EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>gi|53718850|ref|YP_107836.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei K96243]
gi|53725816|ref|YP_103431.1| NADH dehydrogenase subunit D [Burkholderia mallei ATCC 23344]
gi|67642189|ref|ZP_00440949.1| NADH dehydrogenase subunit D [Burkholderia mallei GB8 horse 4]
gi|76808606|ref|YP_332847.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei 1710b]
gi|121599344|ref|YP_992472.1| NADH dehydrogenase subunit D [Burkholderia mallei SAVP1]
gi|124383601|ref|YP_001026725.1| NADH dehydrogenase subunit D [Burkholderia mallei NCTC 10229]
gi|126439204|ref|YP_001058341.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei 668]
gi|126450476|ref|YP_001079990.1| NADH dehydrogenase subunit D [Burkholderia mallei NCTC 10247]
gi|126453345|ref|YP_001065580.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei 1106a]
gi|134283955|ref|ZP_01770651.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
305]
gi|167000365|ref|ZP_02266183.1| NADH-quinone oxidoreductase, D subunit [Burkholderia mallei PRL-20]
gi|167718846|ref|ZP_02402082.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei DM98]
gi|167737855|ref|ZP_02410629.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei 14]
gi|167815039|ref|ZP_02446719.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei 91]
gi|167823455|ref|ZP_02454926.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei 9]
gi|167845007|ref|ZP_02470515.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei B7210]
gi|167893548|ref|ZP_02480950.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei 7894]
gi|167901994|ref|ZP_02489199.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei NCTC 13177]
gi|167910230|ref|ZP_02497321.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei 112]
gi|167918263|ref|ZP_02505354.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei BCC215]
gi|217420099|ref|ZP_03451605.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
576]
gi|226195366|ref|ZP_03790955.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
Pakistan 9]
gi|237811585|ref|YP_002896036.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei MSHR346]
gi|242315234|ref|ZP_04814250.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
1106b]
gi|254175461|ref|ZP_04882121.1| NADH dehydrogenase I, D subunit [Burkholderia mallei ATCC 10399]
gi|254181184|ref|ZP_04887781.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
1655]
gi|254190547|ref|ZP_04897054.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
Pasteur 52237]
gi|254195193|ref|ZP_04901622.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
S13]
gi|254202107|ref|ZP_04908470.1| NADH-quinone oxidoreductase, D subunit [Burkholderia mallei FMH]
gi|254207437|ref|ZP_04913787.1| NADH-quinone oxidoreductase, D subunit [Burkholderia mallei JHU]
gi|254261360|ref|ZP_04952414.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
1710a]
gi|254298536|ref|ZP_04965988.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
406e]
gi|254359859|ref|ZP_04976129.1| NADH-quinone oxidoreductase, D subunit [Burkholderia mallei
2002721280]
gi|386862391|ref|YP_006275340.1| NADH-ubiquinone oxidoreductase subunit D [Burkholderia pseudomallei
1026b]
gi|403518007|ref|YP_006652140.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei BPC006]
gi|418389921|ref|ZP_12967737.1| NADH-ubiquinone oxidoreductase chain D [Burkholderia pseudomallei
354a]
gi|418538028|ref|ZP_13103656.1| NADH-ubiquinone oxidoreductase chain D [Burkholderia pseudomallei
1026a]
gi|418541524|ref|ZP_13107003.1| NADH-ubiquinone oxidoreductase chain D [Burkholderia pseudomallei
1258a]
gi|418547768|ref|ZP_13112907.1| NADH-ubiquinone oxidoreductase chain D [Burkholderia pseudomallei
1258b]
gi|418553950|ref|ZP_13118750.1| NADH-ubiquinone oxidoreductase chain D [Burkholderia pseudomallei
354e]
gi|81380046|sp|Q63VN0.1|NUOD_BURPS RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|81604654|sp|Q62IN8.1|NUOD_BURMA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|123599738|sp|Q3JUA6.1|NUOD_BURP1 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|229891274|sp|A3MIA4.1|NUOD_BURM7 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|229891275|sp|A2S456.1|NUOD_BURM9 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|229891276|sp|A1V2L9.1|NUOD_BURMS RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|229891277|sp|A3NTA9.1|NUOD_BURP0 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|229891278|sp|A3N7M0.1|NUOD_BURP6 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|52209264|emb|CAH35209.1| NADH dehydrogenase I chain D [Burkholderia pseudomallei K96243]
gi|52429239|gb|AAU49832.1| NADH dehydrogenase I, D subunit [Burkholderia mallei ATCC 23344]
gi|76578059|gb|ABA47534.1| NADH dehydrogenase I, D subunit [Burkholderia pseudomallei 1710b]
gi|121228154|gb|ABM50672.1| NADH dehydrogenase I, D subunit [Burkholderia mallei SAVP1]
gi|124291621|gb|ABN00890.1| NADH dehydrogenase I, D subunit [Burkholderia mallei NCTC 10229]
gi|126218697|gb|ABN82203.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
668]
gi|126226987|gb|ABN90527.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
1106a]
gi|126243346|gb|ABO06439.1| NADH dehydrogenase I, D subunit [Burkholderia mallei NCTC 10247]
gi|134244744|gb|EBA44842.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
305]
gi|147746354|gb|EDK53431.1| NADH-quinone oxidoreductase, D subunit [Burkholderia mallei FMH]
gi|147751331|gb|EDK58398.1| NADH-quinone oxidoreductase, D subunit [Burkholderia mallei JHU]
gi|148029099|gb|EDK87004.1| NADH-quinone oxidoreductase, D subunit [Burkholderia mallei
2002721280]
gi|157808218|gb|EDO85388.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
406e]
gi|157938222|gb|EDO93892.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
Pasteur 52237]
gi|160696505|gb|EDP86475.1| NADH dehydrogenase I, D subunit [Burkholderia mallei ATCC 10399]
gi|169651941|gb|EDS84634.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
S13]
gi|184211722|gb|EDU08765.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
1655]
gi|217397403|gb|EEC37419.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
576]
gi|225932568|gb|EEH28566.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
Pakistan 9]
gi|237506696|gb|ACQ99014.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei MSHR346]
gi|238523285|gb|EEP86724.1| NADH dehydrogenase subunit D [Burkholderia mallei GB8 horse 4]
gi|242138473|gb|EES24875.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
1106b]
gi|243063699|gb|EES45885.1| NADH-quinone oxidoreductase, D subunit [Burkholderia mallei PRL-20]
gi|254220049|gb|EET09433.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
1710a]
gi|385348788|gb|EIF55384.1| NADH-ubiquinone oxidoreductase chain D [Burkholderia pseudomallei
1026a]
gi|385357754|gb|EIF63791.1| NADH-ubiquinone oxidoreductase chain D [Burkholderia pseudomallei
1258a]
gi|385359907|gb|EIF65854.1| NADH-ubiquinone oxidoreductase chain D [Burkholderia pseudomallei
1258b]
gi|385370897|gb|EIF76119.1| NADH-ubiquinone oxidoreductase chain D [Burkholderia pseudomallei
354e]
gi|385375875|gb|EIF80612.1| NADH-ubiquinone oxidoreductase chain D [Burkholderia pseudomallei
354a]
gi|385659519|gb|AFI66942.1| NADH-ubiquinone oxidoreductase chain D [Burkholderia pseudomallei
1026b]
gi|403073650|gb|AFR15230.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei BPC006]
Length = 417
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/415 (78%), Positives = 374/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAENKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIEKLL I++P RAQYIRV+FDEITR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVLAIEKLLGIEVPERAQYIRVLFDEITRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLPE MPQYK+S IRN +A
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPEAMPQYKASKIRNERALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R GS+LDFI+DF RFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL +G TG
Sbjct: 183 KMNEARSGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQLGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PM+RGSG+ WDLRKKQPYE+Y+ L+FDIP+G NGD YDRYLVR+EEMRQS +I KQCI+W
Sbjct: 243 PMIRGSGIAWDLRKKQPYEVYDRLDFDIPVGVNGDCYDRYLVRVEEMRQSTRIAKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+K+ P+R+ MK+NMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVITDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGETYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PG+AHL +L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>gi|167562180|ref|ZP_02355096.1| NADH dehydrogenase subunit D [Burkholderia oklahomensis EO147]
gi|167569425|ref|ZP_02362299.1| NADH dehydrogenase subunit D [Burkholderia oklahomensis C6786]
Length = 417
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/415 (78%), Positives = 374/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAENKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIEKLL I +P RAQYIRV+FDEITR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVLAIEKLLGIDVPERAQYIRVLFDEITRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S IRN KA
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNEKALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE RQGS+LDFI+DF RFPK +DEYETLLTDNRIWKQRLVGIGVV+PERA+ +G TG
Sbjct: 183 RMNETRQGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVTPERAMQLGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPYE+Y+ L+FDIP+G NGD YDRYLVR+EEMRQS +I KQCI+W
Sbjct: 243 PMLRGSGIAWDLRKKQPYEVYDRLDFDIPVGVNGDCYDRYLVRVEEMRQSTRIAKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+KI P+R+ MK+NMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVITDNHKIAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGETYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PG+AHL +L EM GHMI+D VTIIGTQDIVFGE+DR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEVDR 417
>gi|78067043|ref|YP_369812.1| NADH dehydrogenase subunit D [Burkholderia sp. 383]
gi|123568007|sp|Q39EE8.1|NUOD_BURS3 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|77967788|gb|ABB09168.1| NADH dehydrogenase subunit D [Burkholderia sp. 383]
Length = 417
Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/415 (78%), Positives = 374/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIEKLL I++P RAQYIRV+FDEITR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVLAIEKLLGIEVPERAQYIRVLFDEITRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S IRN KA
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNEKALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R GS+LDFI+DF RFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL MG TG
Sbjct: 183 KMNEARSGSVLDFIDDFFARFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQMGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPYE+Y+ ++FD+P+G NGD YDRYLVR+EEMRQS +I KQCI+W
Sbjct: 243 PMLRGSGIAWDLRKKQPYEVYDRMDFDVPVGVNGDCYDRYLVRVEEMRQSIRIAKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+++N+K+ P+R+ MK+NMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVMTDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL SL EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>gi|134296430|ref|YP_001120165.1| NADH dehydrogenase subunit D [Burkholderia vietnamiensis G4]
gi|387902790|ref|YP_006333129.1| NADH-ubiquinone oxidoreductase subunit D [Burkholderia sp. KJ006]
gi|229891281|sp|A4JGC7.1|NUOD_BURVG RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|134139587|gb|ABO55330.1| NADH dehydrogenase subunit D [Burkholderia vietnamiensis G4]
gi|387577682|gb|AFJ86398.1| NADH-ubiquinone oxidoreductase chain D [Burkholderia sp. KJ006]
Length = 417
Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/415 (78%), Positives = 374/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAENKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIE+LL I +P RAQYIRV+FDEITR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVLAIERLLGIDVPERAQYIRVLFDEITRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQ+K+S IRN KA
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQFKASKIRNEKALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R GS+LDFI+DF RFPK IDEYETLLTDNRIWKQRLVGIGVVSPERAL MG TG
Sbjct: 183 KMNEARSGSVLDFIDDFFTRFPKCIDEYETLLTDNRIWKQRLVGIGVVSPERALQMGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPYE+Y+ ++FD+P+G NGD YDRYLVR+EEMRQS +I KQCI+W
Sbjct: 243 PMLRGSGIAWDLRKKQPYEVYDRMDFDVPVGVNGDCYDRYLVRVEEMRQSVRIAKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N+GPV+++N+K+ P+R+ MK+NMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNQGPVMTDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL SL EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>gi|402565958|ref|YP_006615303.1| NADH dehydrogenase I subunit D [Burkholderia cepacia GG4]
gi|402247155|gb|AFQ47609.1| NADH dehydrogenase I, D subunit [Burkholderia cepacia GG4]
Length = 417
Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/415 (78%), Positives = 374/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIE+LL I +P RAQYIRV+FDEITR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVLAIERLLGIDVPERAQYIRVLFDEITRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S IRN KA
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNEKALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE+R GS+LDFI+DF RFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL MG TG
Sbjct: 183 KMNESRSGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQMGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPYE+Y+ ++FD+P+G NGD YDRYLVR+EEMRQS +I KQCI+W
Sbjct: 243 PMLRGSGIAWDLRKKQPYEVYDRMDFDVPVGVNGDCYDRYLVRVEEMRQSIRIAKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+++N+K+ P+R+ MK+NMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVMTDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL SL EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>gi|325983286|ref|YP_004295688.1| NADH dehydrogenase I subunit D [Nitrosomonas sp. AL212]
gi|325532805|gb|ADZ27526.1| NADH dehydrogenase I, D subunit [Nitrosomonas sp. AL212]
Length = 417
Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/415 (78%), Positives = 377/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRL+LEL+GEVVR+ADPHIGLLHRATEKLAE +TY+QS+PY
Sbjct: 3 EIRNYTMNFGPQHPAAHGVLRLVLELDGEVVRRADPHIGLLHRATEKLAENKTYIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIEKLL I++PIRAQYIRVMFDEITR+LNHL+WIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHAYVMAIEKLLQIEVPIRAQYIRVMFDEITRILNHLLWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM + LYAFREREDL+DCYEAVSGARMHAAYYRPGGVYRDLP+ MP+Y+ S + + K T+
Sbjct: 123 AMTMFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDSMPKYQHSKVHSEKQTR 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+ NENR+GSLLDFIEDFTNRFP +DEYETLLTDNRIWKQRLV IGVVSPERA ++GFTG
Sbjct: 183 VRNENREGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVDIGVVSPERAKALGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV+WDLRKKQPYE+Y+ L FDIP+G NGD YDRYL+R+EE RQSN+IIKQC+ W
Sbjct: 243 PMLRGSGVEWDLRKKQPYEVYDRLEFDIPVGVNGDCYDRYLIRMEEFRQSNRIIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N G VI++N+K+ P+R++MK NME++IHHFKLFTEGF+VP GE Y VEHPKGEFG
Sbjct: 303 LRKNPGIVITDNHKVAPPSRVDMKQNMEEMIHHFKLFTEGFHVPPGEAYVAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVS+GANKPYR+KIR+PGFAHL +L EM GHMISDVV IIGTQDIVFGEIDR
Sbjct: 363 IYLVSNGANKPYRLKIRAPGFAHLAALDEMSRGHMISDVVAIIGTQDIVFGEIDR 417
>gi|167836052|ref|ZP_02462935.1| NADH dehydrogenase subunit D [Burkholderia thailandensis MSMB43]
gi|424902724|ref|ZP_18326240.1| NADH dehydrogenase subunit D [Burkholderia thailandensis MSMB43]
gi|390933099|gb|EIP90499.1| NADH dehydrogenase subunit D [Burkholderia thailandensis MSMB43]
Length = 417
Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/415 (78%), Positives = 373/415 (89%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAENKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIEKLL I +P RAQYIRV+FDEITR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVLAIEKLLGIDVPERAQYIRVLFDEITRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLPE MPQYK+S IRN +A
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPEAMPQYKASKIRNERALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R GS+LDFI+DF RFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL +G TG
Sbjct: 183 KMNEARSGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQLGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PM+RGSG+ WDLRKKQPYE+Y+ L+FDIP+G NGD YDRYLVR+EEMRQS +I KQCI+W
Sbjct: 243 PMIRGSGIAWDLRKKQPYEVYDRLDFDIPVGVNGDCYDRYLVRVEEMRQSTRIAKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+K+ P+R+ MK+NMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVITDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGETYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PG+AHL +L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>gi|83721170|ref|YP_441617.1| NADH dehydrogenase subunit D [Burkholderia thailandensis E264]
gi|167580425|ref|ZP_02373299.1| NADH dehydrogenase subunit D [Burkholderia thailandensis TXDOH]
gi|167618534|ref|ZP_02387165.1| NADH dehydrogenase subunit D [Burkholderia thailandensis Bt4]
gi|257139687|ref|ZP_05587949.1| NADH dehydrogenase subunit D [Burkholderia thailandensis E264]
gi|123537636|sp|Q2SZN2.1|NUOD_BURTA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|83654995|gb|ABC39058.1| NADH dehydrogenase I, D subunit [Burkholderia thailandensis E264]
Length = 417
Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/415 (78%), Positives = 374/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIEKLL I++P RAQYIRV+FDEITR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVLAIEKLLGIEVPERAQYIRVLFDEITRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLPE MPQYK+S IRN +A
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPEAMPQYKASKIRNERALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R GS+LDFI+DF RFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL +G TG
Sbjct: 183 KMNEARSGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQLGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PM+RGSG+ WDLRKKQPYE+Y+ ++FDIP+G NGD YDRYLVR+EEMRQS +I KQCI+W
Sbjct: 243 PMIRGSGIAWDLRKKQPYEVYDRIDFDIPVGVNGDCYDRYLVRVEEMRQSTRIAKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+K+ P+R+ MK+NMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRENPGPVITDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PG+AHL +L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>gi|350545163|ref|ZP_08914668.1| NADH-ubiquinone oxidoreductase chain D [Candidatus Burkholderia
kirkii UZHbot1]
gi|350527054|emb|CCD38995.1| NADH-ubiquinone oxidoreductase chain D [Candidatus Burkholderia
kirkii UZHbot1]
Length = 417
Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/415 (78%), Positives = 372/415 (89%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y +NFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T+LQS+PY
Sbjct: 3 EIKNYTVNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAETKTFLQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIEKLL I +PIRA+YIRV+FDEITR+LNHLMWIGSH+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVLAIEKLLGIDVPIRAKYIRVLFDEITRVLNHLMWIGSHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S IRN KA
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASTIRNAKALD 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NENRQGSLLDFIEDF NRFP +DEYETLLTDNRIWKQRLV IGVVSPERAL MG +G
Sbjct: 183 KMNENRQGSLLDFIEDFFNRFPGYVDEYETLLTDNRIWKQRLVDIGVVSPERALQMGLSG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG++WDLRKKQPYE+Y L+FDIP+G NGD YDRYLVR+EEMRQS +I KQCI W
Sbjct: 243 AMLRGSGIEWDLRKKQPYEVYAQLDFDIPVGVNGDCYDRYLVRVEEMRQSTRIAKQCIAW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+ +N+K+ P+R+ MKSNME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVMIDNHKVAPPSRVGMKSNMEELIHHFKLFTEGFHVPEGETYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYL+SDGANKPYR+KIR+PG+AHL +L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLISDGANKPYRLKIRAPGYAHLAALDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>gi|170698112|ref|ZP_02889192.1| NADH dehydrogenase I, D subunit [Burkholderia ambifaria IOP40-10]
gi|171316306|ref|ZP_02905527.1| NADH dehydrogenase I, D subunit [Burkholderia ambifaria MEX-5]
gi|170136970|gb|EDT05218.1| NADH dehydrogenase I, D subunit [Burkholderia ambifaria IOP40-10]
gi|171098532|gb|EDT43333.1| NADH dehydrogenase I, D subunit [Burkholderia ambifaria MEX-5]
Length = 417
Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/415 (78%), Positives = 373/415 (89%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIE+LL I +P RAQYIRV+FDEITR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVLAIERLLGIDVPERAQYIRVLFDEITRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S IRN KA
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNEKALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R GS+LDFI+DF RFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL MG TG
Sbjct: 183 KMNEARSGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQMGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPYE+Y+ ++FD+P+G NGD YDRYLVR+EEMRQS +I KQCI+W
Sbjct: 243 PMLRGSGIAWDLRKKQPYEVYDRMDFDVPVGVNGDCYDRYLVRVEEMRQSIRIAKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+++N+K+ P+R+ MK+NMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVMTDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL SL EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>gi|172061206|ref|YP_001808858.1| NADH dehydrogenase subunit D [Burkholderia ambifaria MC40-6]
gi|229891269|sp|B1YTQ4.1|NUOD_BURA4 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|171993723|gb|ACB64642.1| NADH dehydrogenase I, D subunit [Burkholderia ambifaria MC40-6]
Length = 417
Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/415 (78%), Positives = 373/415 (89%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAENKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIE+LL I +P RAQYIRV+FDEITR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVLAIERLLGIDVPERAQYIRVLFDEITRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S IRN KA
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNEKALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R GS+LDFI+DF RFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL MG TG
Sbjct: 183 KMNEARSGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQMGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPYE+Y+ ++FD+P+G NGD YDRYLVR+EEMRQS +I KQCI+W
Sbjct: 243 PMLRGSGIAWDLRKKQPYEVYDRMDFDVPVGVNGDCYDRYLVRVEEMRQSIRIAKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+++N+K+ P+R+ MK+NMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVMTDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL SL EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>gi|254251864|ref|ZP_04945182.1| NADH dehydrogenase I,D subunit [Burkholderia dolosa AUO158]
gi|124894473|gb|EAY68353.1| NADH dehydrogenase I,D subunit [Burkholderia dolosa AUO158]
Length = 417
Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/415 (78%), Positives = 373/415 (89%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAENKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIEKLL I++P RA+YIRV+FDEITR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVLAIEKLLGIEVPERAKYIRVLFDEITRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S IRN KA
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNEKALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R GS+LDFI+DF RFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL MG TG
Sbjct: 183 KMNEARSGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQMGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPYE+Y+ + FD+P+G NGD YDRYLVR+EEMRQS +I KQCI+W
Sbjct: 243 PMLRGSGIAWDLRKKQPYEVYDRMEFDVPVGVNGDCYDRYLVRVEEMRQSVRIAKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+++N+K+ P+R+ MK+NMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVMTDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL SL EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>gi|170733606|ref|YP_001765553.1| NADH dehydrogenase subunit D [Burkholderia cenocepacia MC0-3]
gi|229891270|sp|B1JVN8.1|NUOD_BURCC RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|169816848|gb|ACA91431.1| NADH dehydrogenase I, D subunit [Burkholderia cenocepacia MC0-3]
Length = 417
Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/415 (78%), Positives = 373/415 (89%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIEKLL I++P RAQYIRV+FDEITR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVLAIEKLLGIEVPERAQYIRVLFDEITRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S IRN KA
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNEKALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R GS+LDFI+DF RFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL MG TG
Sbjct: 183 KMNEARSGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQMGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPYE+Y+ ++FD+P+G NGD YDRYLVR+EEMRQS I KQCI+W
Sbjct: 243 PMLRGSGIAWDLRKKQPYEVYDRMDFDVPVGVNGDCYDRYLVRVEEMRQSILIAKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+++N+K+ P+R+ MK+NMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVMTDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL SL EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>gi|115352335|ref|YP_774174.1| NADH dehydrogenase subunit D [Burkholderia ambifaria AMMD]
gi|122322644|sp|Q0BDD3.1|NUOD_BURCM RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|115282323|gb|ABI87840.1| NADH dehydrogenase subunit D [Burkholderia ambifaria AMMD]
Length = 417
Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/415 (78%), Positives = 373/415 (89%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIE+LL I +P RAQYIRV+FDEITR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVLAIERLLGIDVPERAQYIRVLFDEITRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S IRN KA
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNEKALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R GS+LDFI+DF RFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL MG TG
Sbjct: 183 RMNEARSGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQMGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPYE+Y+ ++FD+P+G NGD YDRYLVR+EEMRQS +I KQCI+W
Sbjct: 243 PMLRGSGIAWDLRKKQPYEVYDRMDFDVPVGVNGDCYDRYLVRVEEMRQSIRIAKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+++N+K+ P+R+ MK+NMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVMTDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL SL EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>gi|238028140|ref|YP_002912371.1| NADH dehydrogenase subunit D [Burkholderia glumae BGR1]
gi|237877334|gb|ACR29667.1| NADH dehydrogenase subunit D [Burkholderia glumae BGR1]
Length = 417
Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/415 (78%), Positives = 375/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 DIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAENKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIEKLL I +P RAQYIRV+FDEITR+LNHLMWIGSH LD+G
Sbjct: 63 MDRLDYVSMMANEHGYVLAIEKLLGIDVPERAQYIRVLFDEITRVLNHLMWIGSHGLDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP++MPQYK+S IRN KA
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDVMPQYKASKIRNEKALS 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE RQGS+LDFI+DF RFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL +G TG
Sbjct: 183 KMNEARQGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQLGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG++WDLRKKQPYE+Y+ L+FDIP+G NGD YDRYLVR+EEMRQS +I KQCI+W
Sbjct: 243 AMLRGSGIEWDLRKKQPYEVYDRLDFDIPVGVNGDCYDRYLVRVEEMRQSCRIAKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+++N+KI P R++MKSNMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVMTDNHKIAPPKRVDMKSNMEDLIHHFKLFTEGFHVPEGETYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PG+AHL +L+EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGYAHLSALNEMAHGHMIADAVTIIGTQDIVFGEIDR 417
>gi|377821142|ref|YP_004977513.1| NADH dehydrogenase I subunit D [Burkholderia sp. YI23]
gi|357935977|gb|AET89536.1| NADH dehydrogenase I, D subunit [Burkholderia sp. YI23]
Length = 417
Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/415 (78%), Positives = 373/415 (89%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAETKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIEKLL I +PIRA+YIRV+FDEITR+LNHLMWIGSH+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVLAIEKLLGIDVPIRAKYIRVLFDEITRVLNHLMWIGSHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S IRN KA
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNAKALD 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE RQGSLLDFIEDF RFP+ +DEYETLLTDNRIWKQRLVGIGVVSPERAL MG +G
Sbjct: 183 RMNETRQGSLLDFIEDFFKRFPRCVDEYETLLTDNRIWKQRLVGIGVVSPERALQMGLSG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG++WDLRKKQPYE+Y+ L+FDIP+G NGD YDRYLVR+EEMRQS +I +QCI W
Sbjct: 243 AMLRGSGIEWDLRKKQPYEVYDQLDFDIPVGVNGDCYDRYLVRVEEMRQSTRIAEQCIAW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+ +N+K+ P+R+ MKSNME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVMVDNHKVAPPSRVGMKSNMEELIHHFKLFTEGFHVPEGETYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PG+AHL +L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGYAHLAALDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>gi|163855990|ref|YP_001630288.1| NADH dehydrogenase subunit D [Bordetella petrii DSM 12804]
gi|229891268|sp|A9II07.1|NUOD_BORPD RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|163259718|emb|CAP42019.1| NADH dehydrogenase I, chain D [Bordetella petrii]
Length = 418
Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/416 (79%), Positives = 375/416 (90%), Gaps = 1/416 (0%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +TY+Q+LPY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEHKTYIQALPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIEKLL I+ P+RAQYIRVMFDEITRLLNHLM +GSH+LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEKLLGIEPPLRAQYIRVMFDEITRLLNHLMSLGSHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQY-KSSIIRNNKAT 457
AM V LYAFREREDL+DCYEAVSGARMHAAYYRPGGVYRDLP+ MPQY +SS R K
Sbjct: 123 AMAVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDTMPQYGESSKYRGEKDL 182
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
+I+N+ R GSLLDFIEDFTNRFP +DEYETLLTDNRIWKQRLVGIGVV PERA ++GFT
Sbjct: 183 RIMNDARSGSLLDFIEDFTNRFPACVDEYETLLTDNRIWKQRLVGIGVVDPERAKALGFT 242
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GPMLRGSGV WDLRK QPYE+Y+L++FD+P+G NGD YDRYLVRI EMR+SN+II+QC++
Sbjct: 243 GPMLRGSGVAWDLRKMQPYEVYDLVDFDVPVGVNGDCYDRYLVRIAEMRESNRIIRQCVE 302
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
WLR+N GPV+ N+K+ P R MK+NMEDLIHHFKLFTEGF+VP GE ++ +EHPKGEF
Sbjct: 303 WLRNNPGPVMVENHKVAPPKRTGMKTNMEDLIHHFKLFTEGFHVPPGEAFASIEHPKGEF 362
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
GIYLVSDGANKPYR+KIR+PGFAHLQSL EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 GIYLVSDGANKPYRLKIRAPGFAHLQSLDEMARGHMIADAVTIIGTQDIVFGEIDR 418
>gi|17546778|ref|NP_520180.1| NADH dehydrogenase subunit D [Ralstonia solanacearum GMI1000]
gi|17429078|emb|CAD15766.1| probable nadh dehydrogenaseI(chain d) oxidoreductase protein
[Ralstonia solanacearum GMI1000]
Length = 417
Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/415 (76%), Positives = 375/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAEQ+T++Q++PY
Sbjct: 3 DIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTWIQNVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIE+LL I +P+RAQYIRVMFDEITR++NHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHAYVMAIERLLGIDVPLRAQYIRVMFDEITRIMNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S +RN KA
Sbjct: 123 AMAVFLYAFREREDLFDMYEAVSGARMHAAYYRPGGVYRDLPDSMPQYKASKVRNEKALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R GSLLDFIE FT+RFP +DEYETLLTDNRIWKQRLVGIGVV+PERAL G TG
Sbjct: 183 AMNETRSGSLLDFIEAFTDRFPTYVDEYETLLTDNRIWKQRLVGIGVVTPERALQKGMTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WD+RKKQPYE+Y+ ++FDIP+G NGD YDRYLVR+EEMRQSN+I++QC++W
Sbjct: 243 PMLRGSGIAWDVRKKQPYEVYDRVDFDIPVGVNGDCYDRYLVRVEEMRQSNRIVRQCVEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+K+ P+R+ MK+NME+LIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVITDNHKVAPPSRVEMKTNMEELIHHFKLFTEGMHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY++SDGANKPYR+KIR+PGFAHL +L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYVISDGANKPYRLKIRAPGFAHLAALDEMAKGHMIADAVTIIGTQDIVFGEIDR 417
>gi|293603922|ref|ZP_06686337.1| NADH-quinone oxidoreductase subunit D [Achromobacter piechaudii
ATCC 43553]
gi|292817759|gb|EFF76825.1| NADH-quinone oxidoreductase subunit D [Achromobacter piechaudii
ATCC 43553]
Length = 418
Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/416 (79%), Positives = 374/416 (89%), Gaps = 1/416 (0%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +TY+Q+LPY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEHKTYIQALPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIEKLL ++ P+RAQYIRVMFDEITRLLNHLM +GSH+LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEKLLGVEAPLRAQYIRVMFDEITRLLNHLMSLGSHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQY-KSSIIRNNKAT 457
AM V LYAFREREDL+DCYEAVSGARMHAAYYRPGGVYRDLP+ MPQY +S R +K
Sbjct: 123 AMAVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDTMPQYGDTSKYRGDKEM 182
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
+I+N+ R GSLLDFIEDFTNRFP +DEYETLLTDNRIWKQRLVGIGVV P+RA ++GFT
Sbjct: 183 RIMNDARSGSLLDFIEDFTNRFPACVDEYETLLTDNRIWKQRLVGIGVVDPDRAKALGFT 242
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GPMLRGSGV WDLRK QPYE+Y+LL+FDIP+G NGD YDRYLVRI EMR+SN+II+QC++
Sbjct: 243 GPMLRGSGVAWDLRKTQPYEVYDLLDFDIPVGVNGDCYDRYLVRIAEMRESNRIIRQCVE 302
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
WLR+N GPV+ N+KI P R MK+NME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEF
Sbjct: 303 WLRNNPGPVMIENHKIAPPKRTAMKTNMEELIHHFKLFTEGFHVPPGEAYASVEHPKGEF 362
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
GIYLVSDGANKPYR+KIR+PGF HLQSL EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 GIYLVSDGANKPYRLKIRAPGFVHLQSLDEMSRGHMIADAVTIIGTQDIVFGEIDR 418
>gi|330817789|ref|YP_004361494.1| NADH dehydrogenase subunit delta [Burkholderia gladioli BSR3]
gi|327370182|gb|AEA61538.1| NADH dehydrogenase delta subunit [Burkholderia gladioli BSR3]
Length = 417
Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/415 (78%), Positives = 377/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 DIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAENKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIEKLL I++P RA+YIRV+FDEITR+LNHLMWIGSH LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVLAIEKLLGIEVPERAKYIRVLFDEITRVLNHLMWIGSHGLDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP++MPQYK+S IRN KA +
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDVMPQYKASKIRNAKALE 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE RQGS+LDFI+DF RFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL +G TG
Sbjct: 183 KMNEARQGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQLGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG++WDLRKKQPYE+Y+ L+FDIP+G NGD YDRYLVR+EEMRQS +I KQCI+W
Sbjct: 243 AMLRGSGIEWDLRKKQPYEVYDRLDFDIPVGVNGDCYDRYLVRVEEMRQSCRIAKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+++N+K+ P R++MKSNMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVMTDNHKVAPPKRVDMKSNMEDLIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PG+AHL +L+EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGYAHLSALNEMARGHMIADAVTIIGTQDIVFGEIDR 417
>gi|299066336|emb|CBJ37520.1| NADH-ubiquinone oxidoreductase subunit D [Ralstonia solanacearum
CMR15]
Length = 417
Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/415 (76%), Positives = 375/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAEQ+T++Q++PY
Sbjct: 3 DIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTWIQNVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIE+LL I +P+RAQYIRVMFDEITR++NHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHAYVMAIERLLGIDVPLRAQYIRVMFDEITRIMNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S +RN KA
Sbjct: 123 AMAVFLYAFREREDLFDMYEAVSGARMHAAYYRPGGVYRDLPDSMPQYKASKVRNEKALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
++NE R GSLLDFIE FT+RFP +DEYETLLTDNRIWKQRLVGIGVV+PERAL G TG
Sbjct: 183 VMNETRSGSLLDFIEAFTDRFPTYVDEYETLLTDNRIWKQRLVGIGVVTPERALQKGMTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WD+RKKQPYE+Y+ ++FDIP+G NGD YDRYLVR+EEMRQSN+I++QC++W
Sbjct: 243 PMLRGSGIAWDVRKKQPYEVYDRVDFDIPVGVNGDCYDRYLVRVEEMRQSNRIVRQCVEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+K+ P+R+ MK+NME+LIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVITDNHKVAPPSRVEMKTNMEELIHHFKLFTEGMHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY++SDGANKPYR+KIR+PGF HL +L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYVISDGANKPYRLKIRAPGFVHLAALDEMAKGHMIADAVTIIGTQDIVFGEIDR 417
>gi|332285014|ref|YP_004416925.1| NADH dehydrogenase subunit D [Pusillimonas sp. T7-7]
gi|330428967|gb|AEC20301.1| NADH dehydrogenase subunit D [Pusillimonas sp. T7-7]
Length = 418
Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/416 (78%), Positives = 374/416 (89%), Gaps = 1/416 (0%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T+LQ+LPY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEHKTFLQALPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMA+E L+ IK+P+RAQYIRVMFDEITRLLNHLM +GSH+LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMAVENLVGIKVPLRAQYIRVMFDEITRLLNHLMSLGSHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQY-KSSIIRNNKAT 457
AM V LYAFREREDL+DCYEAVSGARMHAAYYRPGGVYRDLP+ MPQY +SS R K
Sbjct: 123 AMAVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDTMPQYGQSSKYRGEKEL 182
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
+ +NE R GSLLDFIEDFTNRFP +DEYETLLTDNRIWKQRLVGIGVV P+RA ++GFT
Sbjct: 183 RAMNEARSGSLLDFIEDFTNRFPTCVDEYETLLTDNRIWKQRLVGIGVVDPDRAKALGFT 242
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GPMLRGSGV+WDLRK QPYE+Y+ L+FDIP+G NGD YDRYLVRI EMR+SN+II+QC++
Sbjct: 243 GPMLRGSGVEWDLRKHQPYEVYDRLDFDIPVGTNGDCYDRYLVRIAEMRESNRIIRQCVE 302
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
WLR+N GPVI +N+KI P+R MK+ MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEF
Sbjct: 303 WLRNNPGPVIIDNHKIAPPSRERMKTGMEDLIHHFKLFTEGMHVPAGETYASVEHPKGEF 362
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
GIY+VSDGANKPYR+KIR+PGFAHLQSL EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 GIYMVSDGANKPYRVKIRAPGFAHLQSLDEMSRGHMIADAVTIIGTQDIVFGEIDR 418
>gi|297538953|ref|YP_003674722.1| NADH dehydrogenase I subunit D [Methylotenera versatilis 301]
gi|297258300|gb|ADI30145.1| NADH dehydrogenase I, D subunit [Methylotenera versatilis 301]
Length = 417
Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/415 (78%), Positives = 369/415 (88%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHR TEKLAE RTYLQS+PY
Sbjct: 3 EIRNYTMNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAENRTYLQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIEK++ I++PIRAQYIRVMFDEITR+LNHL+W+G+H+LD+G
Sbjct: 63 MDRLDYVSMMSNEHAYVMAIEKMMGIEVPIRAQYIRVMFDEITRVLNHLLWLGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL DCYEAVSGARMHAAYYRPGGVYRDLP MPQY+ S +RN K K
Sbjct: 123 AMTVFLYAFREREDLFDCYEAVSGARMHAAYYRPGGVYRDLPTQMPQYEVSPLRNAKTVK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
NENRQGSLLDFIEDF NRFPK +DEYETLLTDNRIWKQR V +G+V+PERAL +G TG
Sbjct: 183 SQNENRQGSLLDFIEDFVNRFPKYVDEYETLLTDNRIWKQRTVDVGIVTPERALQLGMTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRK QPYE+Y ++FDIP+G NGD YDRYLVR+EE RQSN+IIKQC+ W
Sbjct: 243 PMLRGSGIAWDLRKTQPYEVYANMDFDIPVGVNGDCYDRYLVRMEEFRQSNRIIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVIS++NK+ P R MKSNMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVISSDNKVAPPDREGMKSNMEDLIHHFKLFTEGFHVPAGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY+VSDGANKPYR+KIR+PGFAHL +L EM GHMI+D+V IIGTQDIVFGEIDR
Sbjct: 363 IYMVSDGANKPYRLKIRAPGFAHLAALDEMTRGHMIADLVAIIGTQDIVFGEIDR 417
>gi|253996970|ref|YP_003049034.1| NADH dehydrogenase subunit D [Methylotenera mobilis JLW8]
gi|253983649|gb|ACT48507.1| NADH dehydrogenase I, D subunit [Methylotenera mobilis JLW8]
Length = 417
Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/415 (78%), Positives = 369/415 (88%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHR TEKLAE RTYLQS+PY
Sbjct: 3 EIRNYTMNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAENRTYLQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIEK+L +++PIRAQYIRVMFDEITR+LNHL+W+G+H+LD+G
Sbjct: 63 MDRLDYVSMMSNEHAYVMAIEKMLGLEVPIRAQYIRVMFDEITRVLNHLLWLGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL D YEAVSGARMHAAYYRPGGVYRDLP MPQY+ S +RN K K
Sbjct: 123 AMTVFLYAFREREDLFDVYEAVSGARMHAAYYRPGGVYRDLPNSMPQYQVSSMRNAKTVK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
N NRQGSLLDFIEDFTNRFP +DEYETLLTDNRIWKQR VGIGVVSPERAL++G TG
Sbjct: 183 AQNANRQGSLLDFIEDFTNRFPAYVDEYETLLTDNRIWKQRTVGIGVVSPERALALGMTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG++WDLRKKQPYE+Y L+FDIP+G NGD YDRYLVR+EE RQSN+IIKQC+ W
Sbjct: 243 PMLRGSGIEWDLRKKQPYEVYADLDFDIPVGVNGDCYDRYLVRMEEFRQSNRIIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI+ +NK+ P R MK+NMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVITADNKVAPPNREGMKTNMEDLIHHFKLFTEGFHVPAGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY+VSDGANKPYR+KIR+PGF HL +L EM GHMI+D+V IIGTQDIVFGEIDR
Sbjct: 363 IYMVSDGANKPYRLKIRAPGFPHLAALDEMTRGHMIADLVAIIGTQDIVFGEIDR 417
>gi|422323032|ref|ZP_16404072.1| NADH dehydrogenase subunit I [Achromobacter xylosoxidans C54]
gi|317401991|gb|EFV82591.1| NADH dehydrogenase subunit I [Achromobacter xylosoxidans C54]
Length = 418
Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/416 (78%), Positives = 375/416 (90%), Gaps = 1/416 (0%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +TY+Q+LPY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEHKTYIQALPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIEKLL ++ P+RAQYIRVMFDEITRLLNHLM +GSH+LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEKLLGVEAPLRAQYIRVMFDEITRLLNHLMSLGSHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQY-KSSIIRNNKAT 457
AM V LYAFREREDL+DCYEAVSGARMHAAYYRPGGVYRDLP+ MPQY ++S R K
Sbjct: 123 AMAVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDTMPQYGETSKYRGEKEV 182
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
+++N+ R GSLLDFIEDFTNRFP +DEYETLLTDNRIWKQRLVGIGVV P+RA ++GFT
Sbjct: 183 RVMNDARSGSLLDFIEDFTNRFPACVDEYETLLTDNRIWKQRLVGIGVVDPDRAKALGFT 242
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GPMLRGSGV WDLRK QPYE+Y+LL+FDIP+G NGD YDRYLVRI EMR+SN+II+QC++
Sbjct: 243 GPMLRGSGVAWDLRKMQPYEVYDLLDFDIPVGVNGDCYDRYLVRIAEMRESNRIIRQCVE 302
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
WLR+N GPV+ N+KI P R MK+NME+LIHHFKLFTEGF+VP GE ++ VEHPKGEF
Sbjct: 303 WLRNNPGPVMIENHKIAPPKRTAMKTNMEELIHHFKLFTEGFHVPPGEAFASVEHPKGEF 362
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
GIYLVSDGANKPYR+KIR+PGFAHLQSL EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 GIYLVSDGANKPYRLKIRAPGFAHLQSLDEMSRGHMIADAVTIIGTQDIVFGEIDR 418
>gi|421482733|ref|ZP_15930313.1| NADH dehydrogenase subunit D [Achromobacter piechaudii HLE]
gi|400199044|gb|EJO32000.1| NADH dehydrogenase subunit D [Achromobacter piechaudii HLE]
Length = 418
Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/416 (78%), Positives = 374/416 (89%), Gaps = 1/416 (0%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +TY+Q+LPY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEHKTYIQALPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIEKLL ++ P+RAQYIRVMFDEITRLLNHLM +GSH+LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEKLLGVEAPLRAQYIRVMFDEITRLLNHLMSLGSHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQY-KSSIIRNNKAT 457
AM V LYAFREREDL+DCYEAVSGARMHAAYYRPGGVYRDLP+ MPQY +S R NK
Sbjct: 123 AMAVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDTMPQYGDTSKYRGNKEM 182
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
+I+N+ R GSLLDFIEDFTNRFP +DEYETLLTDNRIWKQRLVGIGVV P+RA ++GFT
Sbjct: 183 RIMNDARSGSLLDFIEDFTNRFPACVDEYETLLTDNRIWKQRLVGIGVVDPDRAKALGFT 242
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GPMLRGSGV WDLRK QPYE+Y+LL+FDIP+G NGD YDRYLVRI EMR+SN+II+QC++
Sbjct: 243 GPMLRGSGVAWDLRKTQPYEVYDLLDFDIPVGVNGDCYDRYLVRIAEMRESNRIIRQCVE 302
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
WLR+N GPV+ N+KI P R MK+NME+LIHHFKLFTEGF+VP GE ++ VEHPKGEF
Sbjct: 303 WLRNNPGPVMIENHKIAPPKRTAMKTNMEELIHHFKLFTEGFHVPPGEAFASVEHPKGEF 362
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
GIYLVSDGANKPYR+KIR+PGF HLQ+L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 GIYLVSDGANKPYRLKIRAPGFVHLQALDEMSRGHMIADAVTIIGTQDIVFGEIDR 418
>gi|124266599|ref|YP_001020603.1| NADH dehydrogenase subunit D [Methylibium petroleiphilum PM1]
gi|218534417|sp|A2SFM9.1|NUOD_METPP RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|124259374|gb|ABM94368.1| NADH dehydrogenase [Methylibium petroleiphilum PM1]
Length = 417
Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/415 (77%), Positives = 373/415 (89%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRLILEL+GEV+++ADPHIGLLHRATEKLAE +TY+QSLPY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLILELDGEVIQRADPHIGLLHRATEKLAESKTYIQSLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAY +AIEKLL + +P+RAQYIRVMF EITR+LNHL+WIG+H LD G
Sbjct: 63 MDRLDYVSMMCNEHAYCLAIEKLLGVDVPVRAQYIRVMFSEITRILNHLLWIGAHGLDCG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +L+YAFREREDL D YEAVSGARMHAAY+RPGGVYRDLP+ MPQY+ S IRN KA
Sbjct: 123 AMNILIYAFREREDLFDMYEAVSGARMHAAYFRPGGVYRDLPDTMPQYRVSKIRNAKALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NENRQGSLLDFIEDF RFPKN+D+YETLLTDNRIWKQR VGIGVV+PERAL++GFTG
Sbjct: 183 KMNENRQGSLLDFIEDFCRRFPKNVDDYETLLTDNRIWKQRTVGIGVVTPERALNLGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRK QPY++Y+ ++FDIP+G GD YDRYLVR+EE+RQSN+II+QC W
Sbjct: 243 PMLRGSGIAWDLRKTQPYDVYDRVDFDIPVGAGGDCYDRYLVRVEELRQSNRIIQQCAAW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPVI++N+K+ +P R++MKSNME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRANPGPVITDNHKVAAPGRVDMKSNMEELIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL ++ EM GHMI+D V +IGT DIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLAAMDEMSRGHMIADAVAVIGTMDIVFGEIDR 417
>gi|389871767|ref|YP_006379186.1| NADH dehydrogenase subunit D [Advenella kashmirensis WT001]
gi|388537016|gb|AFK62204.1| NADH dehydrogenase subunit D [Advenella kashmirensis WT001]
Length = 418
Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/416 (79%), Positives = 371/416 (89%), Gaps = 1/416 (0%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRLILEL GEV+++ADPHIGLLHRATEKLAE +TYLQ+LPY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLILELSGEVIQRADPHIGLLHRATEKLAEHKTYLQALPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIEKLL I++P+RAQYIRVMFDEITRLLNHLM +G+H LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEKLLGIEVPLRAQYIRVMFDEITRLLNHLMSVGTHGLDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYK-SSIIRNNKAT 457
AM +LYAFREREDL+DCYEAVSGARMHAAYYRPGGVYRDLP+ MPQ+K S R+ +
Sbjct: 123 AMAAMLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDSMPQHKMDSKYRSKREI 182
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
K NENR GSLLDFIE FT RFPK +DEYETLLTDNRIWKQRLVGIGVV P+RA+++GFT
Sbjct: 183 KQFNENRDGSLLDFIEAFTERFPKCVDEYETLLTDNRIWKQRLVGIGVVDPDRAMALGFT 242
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GPMLRGSG+ WDLR+ QPYE+Y+ L FDIP+G NGD YDRYLVRI EMR+SN+II QC+
Sbjct: 243 GPMLRGSGISWDLRRMQPYEVYDRLEFDIPVGTNGDCYDRYLVRIAEMRESNRIISQCVH 302
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
WLR+N GPVI++N+KIT P R +MKSNME+LIHHFKLFTEGF VP GE+YS VEHPKGEF
Sbjct: 303 WLRNNPGPVINDNHKITPPKRTSMKSNMEELIHHFKLFTEGFPVPAGEVYSAVEHPKGEF 362
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
GIYLVSDGANKPYR+KIR PGF HLQSL EM GHM++D VTIIGTQDIVFGEIDR
Sbjct: 363 GIYLVSDGANKPYRLKIRPPGFVHLQSLDEMSRGHMLADAVTIIGTQDIVFGEIDR 418
>gi|359797068|ref|ZP_09299656.1| NADH dehydrogenase subunit D [Achromobacter arsenitoxydans SY8]
gi|359364966|gb|EHK66675.1| NADH dehydrogenase subunit D [Achromobacter arsenitoxydans SY8]
Length = 418
Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/416 (78%), Positives = 375/416 (90%), Gaps = 1/416 (0%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +TY+Q+LPY
Sbjct: 3 DIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEHKTYIQALPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIEKLL ++ P+RAQYIRVMFDEITRLLNHLM +GSH+LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEKLLGVEAPLRAQYIRVMFDEITRLLNHLMSLGSHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQY-KSSIIRNNKAT 457
AM V LYAFREREDL+DCYEAVSGARMHAAYYRPGGVYRDLP+ MPQY SS R +K
Sbjct: 123 AMAVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDSMPQYGDSSKFRGDKEM 182
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
+++N+ R GSLLDFIEDFTNRFP +DEYETLLTDNRIWKQRLVGIGVV P+RA ++GFT
Sbjct: 183 RVMNDARSGSLLDFIEDFTNRFPGCVDEYETLLTDNRIWKQRLVGIGVVDPDRAKALGFT 242
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GPMLRGSGV WDLRK QPYE+Y+LL+FDIP+G NGD YDRYLVRI EMR+SN+II+QC++
Sbjct: 243 GPMLRGSGVAWDLRKTQPYEVYDLLDFDIPVGVNGDCYDRYLVRIAEMRESNRIIRQCVE 302
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
WLR+N GPV+ N+KI P+R MK+NME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEF
Sbjct: 303 WLRNNPGPVMIENHKIAPPSRTAMKTNMEELIHHFKLFTEGFHVPPGEAYASVEHPKGEF 362
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
GIYLVSDGANKPYR+KIR+PGF HLQSL EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 GIYLVSDGANKPYRLKIRAPGFVHLQSLDEMSRGHMIADAVTIIGTQDIVFGEIDR 418
>gi|33592010|ref|NP_879654.1| NADH dehydrogenase subunit D [Bordetella pertussis Tohama I]
gi|384203312|ref|YP_005589051.1| NADH dehydrogenase subunit D [Bordetella pertussis CS]
gi|408416223|ref|YP_006626930.1| respiratory-chain NADH dehydrogenase, 49 kDa subunit [Bordetella
pertussis 18323]
gi|81425361|sp|Q7VZQ2.1|NUOD_BORPE RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|33571654|emb|CAE41147.1| respiratory-chain NADH dehydrogenase, 49 kDa subunit [Bordetella
pertussis Tohama I]
gi|332381426|gb|AEE66273.1| NADH dehydrogenase subunit D [Bordetella pertussis CS]
gi|401778393|emb|CCJ63805.1| respiratory-chain NADH dehydrogenase, 49 kDa subunit [Bordetella
pertussis 18323]
Length = 418
Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/416 (78%), Positives = 374/416 (89%), Gaps = 1/416 (0%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++Q+LPY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEHKTFIQALPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIEKLL I+ P+RAQYIRVMFDEITR+LNHLM +GSH+LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEKLLGIEAPLRAQYIRVMFDEITRVLNHLMSLGSHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQY-KSSIIRNNKAT 457
AM V LYAFREREDL+DCYEAVSGARMHAAYYRPGGVYRDLP+ MPQY SS R K
Sbjct: 123 AMAVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDTMPQYGDSSKYRGEKEV 182
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
+ +N+ R GSLLDFIEDFTNRFP +DEYETLLTDNRIWKQRLVGIGVV P+RA ++GFT
Sbjct: 183 RAMNDARSGSLLDFIEDFTNRFPSCVDEYETLLTDNRIWKQRLVGIGVVDPDRAKALGFT 242
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GPMLRGSGV WDLRK QPYE+Y+L++FD+P+G NGD YDRYLVR+ EMR+SN+II+QC++
Sbjct: 243 GPMLRGSGVAWDLRKTQPYEVYDLMDFDVPVGVNGDCYDRYLVRVAEMRESNRIIRQCVE 302
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
WLR+N GPV+ N+KI P+R MKSNME+LIHHFKLF+EGF+VP GE Y+ VEHPKGEF
Sbjct: 303 WLRNNPGPVMIENHKIAPPSRTAMKSNMEELIHHFKLFSEGFHVPPGEAYAAVEHPKGEF 362
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
GIYLV+DGANKPYR+KIR+PGFAHLQSL EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 GIYLVADGANKPYRLKIRAPGFAHLQSLDEMARGHMIADAVTIIGTQDIVFGEIDR 418
>gi|423016157|ref|ZP_17006878.1| NADH dehydrogenase subunit D [Achromobacter xylosoxidans AXX-A]
gi|338780848|gb|EGP45247.1| NADH dehydrogenase subunit D [Achromobacter xylosoxidans AXX-A]
Length = 418
Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/416 (78%), Positives = 373/416 (89%), Gaps = 1/416 (0%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +TY+Q+LPY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEHKTYIQALPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIEKLL ++ P+RAQYIRVMFDEITRLLNHLM +GSH+LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEKLLGVEAPLRAQYIRVMFDEITRLLNHLMSLGSHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQY-KSSIIRNNKAT 457
AM V LYAFREREDL+DCYEAVSGARMHAAYYRPGGVYRDLP+ MPQY +S R K
Sbjct: 123 AMAVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDTMPQYGDTSKYRGEKEM 182
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
+++N+ R GSLLDFIEDFTNRFP +DEYETLLTDNRIWKQRLVGIGVV P+RA ++GFT
Sbjct: 183 RVMNDARSGSLLDFIEDFTNRFPACVDEYETLLTDNRIWKQRLVGIGVVDPDRAKALGFT 242
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GPMLRGSGV WDLRK QPYE+Y+LL+FDIP+G NGD YDRYLVRI EMR+SN+II+QC++
Sbjct: 243 GPMLRGSGVAWDLRKMQPYEVYDLLDFDIPVGVNGDCYDRYLVRIAEMRESNRIIRQCVE 302
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
WLR+N GPV+ N+KI P R MK+NME+LIHHFKLFTEGF+VP GE ++ VEHPKGEF
Sbjct: 303 WLRNNPGPVMIENHKIAPPKRTAMKTNMEELIHHFKLFTEGFHVPPGEAFASVEHPKGEF 362
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
GIYLVSDGANKPYR+KIR+PGF HLQSL EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 GIYLVSDGANKPYRLKIRAPGFVHLQSLDEMSRGHMIADAVTIIGTQDIVFGEIDR 418
>gi|33597908|ref|NP_885551.1| NADH dehydrogenase subunit D [Bordetella parapertussis 12822]
gi|33602813|ref|NP_890373.1| NADH dehydrogenase subunit D [Bordetella bronchiseptica RB50]
gi|410421288|ref|YP_006901737.1| respiratory-chain NADH dehydrogenase, 49 kDa subunit [Bordetella
bronchiseptica MO149]
gi|410473877|ref|YP_006897158.1| respiratory-chain NADH dehydrogenase, 49 kDa subunit [Bordetella
parapertussis Bpp5]
gi|412341853|ref|YP_006970608.1| respiratory-chain NADH dehydrogenase, 49 kDa subunit [Bordetella
bronchiseptica 253]
gi|427815829|ref|ZP_18982893.1| respiratory-chain NADH dehydrogenase, 49 kDa subunit [Bordetella
bronchiseptica 1289]
gi|427818377|ref|ZP_18985440.1| respiratory-chain NADH dehydrogenase, 49 kDa subunit [Bordetella
bronchiseptica D445]
gi|81426434|sp|Q7W5B0.1|NUOD_BORPA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|81429889|sp|Q7WCU2.1|NUOD_BORBR RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|33574337|emb|CAE38673.1| respiratory-chain NADH dehydrogenase, 49 kDa subunit [Bordetella
parapertussis]
gi|33577255|emb|CAE35812.1| respiratory-chain NADH dehydrogenase, 49 kDa subunit [Bordetella
bronchiseptica RB50]
gi|408443987|emb|CCJ50684.1| respiratory-chain NADH dehydrogenase, 49 kDa subunit [Bordetella
parapertussis Bpp5]
gi|408448583|emb|CCJ60266.1| respiratory-chain NADH dehydrogenase, 49 kDa subunit [Bordetella
bronchiseptica MO149]
gi|408771687|emb|CCJ56491.1| respiratory-chain NADH dehydrogenase, 49 kDa subunit [Bordetella
bronchiseptica 253]
gi|410566829|emb|CCN24398.1| respiratory-chain NADH dehydrogenase, 49 kDa subunit [Bordetella
bronchiseptica 1289]
gi|410569377|emb|CCN17478.1| respiratory-chain NADH dehydrogenase, 49 kDa subunit [Bordetella
bronchiseptica D445]
Length = 418
Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/416 (78%), Positives = 374/416 (89%), Gaps = 1/416 (0%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++Q+LPY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEHKTFIQALPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIEKLL I+ P+RAQYIRVMFDEITR+LNHLM +GSH+LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEKLLGIEAPLRAQYIRVMFDEITRVLNHLMSLGSHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQY-KSSIIRNNKAT 457
AM V LYAFREREDL+DCYEAVSGARMHAAYYRPGGVYRDLP+ MPQY SS R K
Sbjct: 123 AMAVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDTMPQYGDSSKYRGEKEV 182
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
+ +N+ R GSLLDFIEDFTNRFP +DEYETLLTDNRIWKQRLVGIGVV P+RA ++GFT
Sbjct: 183 RAMNDARSGSLLDFIEDFTNRFPGCVDEYETLLTDNRIWKQRLVGIGVVDPDRAKALGFT 242
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GPMLRGSGV WDLRK QPYE+Y+L++FD+P+G NGD YDRYLVR+ EMR+SN+II+QC++
Sbjct: 243 GPMLRGSGVAWDLRKTQPYEVYDLMDFDVPVGVNGDCYDRYLVRVAEMRESNRIIRQCVE 302
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
WLR+N GPV+ N+KI P+R MKSNME+LIHHFKLF+EGF+VP GE Y+ VEHPKGEF
Sbjct: 303 WLRNNPGPVMIENHKIAPPSRTAMKSNMEELIHHFKLFSEGFHVPPGEAYAAVEHPKGEF 362
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
GIYLV+DGANKPYR+KIR+PGFAHLQSL EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 GIYLVADGANKPYRLKIRAPGFAHLQSLDEMARGHMIADAVTIIGTQDIVFGEIDR 418
>gi|311104661|ref|YP_003977514.1| NADH dehydrogenase (quinone) subunit D [Achromobacter xylosoxidans
A8]
gi|310759350|gb|ADP14799.1| NADH dehydrogenase (quinone), D subunit [Achromobacter xylosoxidans
A8]
Length = 418
Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/416 (78%), Positives = 373/416 (89%), Gaps = 1/416 (0%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +TY+Q+LPY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEHKTYIQALPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIEKLL ++ P+RAQYIRVMFDEITRLLNHLM +GSH+LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEKLLGVEAPLRAQYIRVMFDEITRLLNHLMSLGSHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQY-KSSIIRNNKAT 457
AM V LYAFREREDL+DCYEAVSGARMHAAYYRPGGVYRDLP+ MPQY +S R +K
Sbjct: 123 AMAVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDSMPQYGDTSKYRGDKEM 182
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
+++N+ R GSLLDFIEDFTNRFP +DEYETLLTDNRIWKQRLVGIGVV PERA ++GFT
Sbjct: 183 RVMNDARSGSLLDFIEDFTNRFPGCVDEYETLLTDNRIWKQRLVGIGVVDPERAKALGFT 242
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GPMLRGSGV WDLRK QPYE+Y+LL+FDIP+G NGD YDRYLVRI EMR+SN+II+QC++
Sbjct: 243 GPMLRGSGVAWDLRKMQPYEVYDLLDFDIPVGVNGDCYDRYLVRIAEMRESNRIIRQCVE 302
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
WLR+N GPV+ N+KI P R MK+NME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEF
Sbjct: 303 WLRNNPGPVMIENHKIAPPKRTAMKTNMEELIHHFKLFTEGFHVPPGEAYASVEHPKGEF 362
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
GIY VSDGANKPYR+KIR+PGF HLQ+L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 GIYAVSDGANKPYRLKIRAPGFVHLQALDEMSRGHMIADAVTIIGTQDIVFGEIDR 418
>gi|427825760|ref|ZP_18992822.1| respiratory-chain NADH dehydrogenase, 49 kDa subunit [Bordetella
bronchiseptica Bbr77]
gi|410591025|emb|CCN06120.1| respiratory-chain NADH dehydrogenase, 49 kDa subunit [Bordetella
bronchiseptica Bbr77]
Length = 418
Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/416 (78%), Positives = 373/416 (89%), Gaps = 1/416 (0%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++Q+LPY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEHKTFIQALPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIEKLL I+ P+RAQYIRVMFDEITR+LNHLM +GSH+LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEKLLGIEAPLRAQYIRVMFDEITRVLNHLMSLGSHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQY-KSSIIRNNKAT 457
AM V LYAFREREDL+DCYEAVSGARMHAAYYRPGGVYRDLP+ MPQY SS R K
Sbjct: 123 AMAVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDTMPQYGDSSKYRGEKEV 182
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
+ +N+ R GSLLDFIEDFTNRFP +DEYETLLTDNRIWKQRLVGIGVV P+RA ++GFT
Sbjct: 183 RAMNDARSGSLLDFIEDFTNRFPGCVDEYETLLTDNRIWKQRLVGIGVVDPDRAKALGFT 242
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GPMLRGSGV WDLRK QPYE+Y+L++FD+P+G NGD YDRYLVR+ EMR+SN+II+QC++
Sbjct: 243 GPMLRGSGVAWDLRKTQPYEVYDLMDFDVPVGVNGDCYDRYLVRVAEMRESNRIIRQCVE 302
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
WLR+N GPV+ N+KI P R MKSNME+LIHHFKLF+EGF+VP GE Y+ VEHPKGEF
Sbjct: 303 WLRNNPGPVMIENHKIAPPRRTAMKSNMEELIHHFKLFSEGFHVPPGEAYAAVEHPKGEF 362
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
GIYLV+DGANKPYR+KIR+PGFAHLQSL EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 GIYLVADGANKPYRLKIRAPGFAHLQSLDEMARGHMIADAVTIIGTQDIVFGEIDR 418
>gi|452124073|ref|ZP_21936657.1| NADH dehydrogenase subunit D [Bordetella holmesii F627]
gi|452127458|ref|ZP_21940039.1| NADH dehydrogenase subunit D [Bordetella holmesii H558]
gi|451923303|gb|EMD73444.1| NADH dehydrogenase subunit D [Bordetella holmesii F627]
gi|451926738|gb|EMD76868.1| NADH dehydrogenase subunit D [Bordetella holmesii H558]
Length = 418
Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/416 (77%), Positives = 374/416 (89%), Gaps = 1/416 (0%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++Q+LPY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEHKTFIQALPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIEK+L I+ P+RAQYIRVMFDEITR+LNHLM +GSH+LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEKMLGIEAPLRAQYIRVMFDEITRILNHLMSLGSHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQY-KSSIIRNNKAT 457
AM V LYAFREREDL+DCYEAVSGARMHAAYYRPGGVYRDLP+ M QY SS R +K
Sbjct: 123 AMAVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDAMSQYGASSKYRGDKEL 182
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
+I+N+ R GSLLDFIEDFTNRFP +DEYETLLTDNRIWKQRLVGIGVV P+RA ++GFT
Sbjct: 183 RIMNDARSGSLLDFIEDFTNRFPACVDEYETLLTDNRIWKQRLVGIGVVDPDRAKALGFT 242
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GPMLRGSGV WDLRK QPYE+Y+L++FD+P+G NGD YDRYLVR+ E+R+SN+II+QC++
Sbjct: 243 GPMLRGSGVAWDLRKTQPYEVYDLMDFDVPVGVNGDCYDRYLVRVAELRESNRIIRQCVE 302
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
WLR+N GPV+ N+K+ P R +MKSNME+LIHHFKLFTEGF+VP GE Y VEHPKGEF
Sbjct: 303 WLRNNPGPVMIENHKVAPPKRTDMKSNMEELIHHFKLFTEGFHVPPGEAYGAVEHPKGEF 362
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
GIYLVSDGANKPYR+KIR+PGFAHLQSL EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 GIYLVSDGANKPYRLKIRAPGFAHLQSLDEMSRGHMIADAVTIIGTQDIVFGEIDR 418
>gi|334129593|ref|ZP_08503397.1| NADH-ubiquinone oxidoreductase D subunit [Methyloversatilis
universalis FAM5]
gi|333445278|gb|EGK73220.1| NADH-ubiquinone oxidoreductase D subunit [Methyloversatilis
universalis FAM5]
Length = 417
Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/415 (77%), Positives = 373/415 (89%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRL+LEL+GEVV++ADPHIGLLHRATEKLAE RT++QS+PY
Sbjct: 3 EIRNYTMNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRATEKLAETRTWVQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAY MAIEKLLN+ +P RAQYIRVMFDEITR+LNHL+W+G+H+LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYCMAIEKLLNLDVPERAQYIRVMFDEITRILNHLLWLGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQY+++ +N A K
Sbjct: 123 AMTVFLYAFREREDLMDAYEAVSGARMHAAYYRPGGVYRDLPDTMPQYQANKFKNADAIK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNENR GS+LDF++DFT+RFP+ +DEYETLLTDNRIWKQRLV IG+V+PERA ++GFTG
Sbjct: 183 RLNENRSGSMLDFLQDFTDRFPRYVDEYETLLTDNRIWKQRLVDIGIVTPERAKALGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPYE+Y+ + FDIP+G NGDSYDRYLVRIEEMRQSN+II+QCI W
Sbjct: 243 PMLRGSGIAWDLRKKQPYEVYDRMEFDIPVGTNGDSYDRYLVRIEEMRQSNRIIRQCIDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVIS+N+K+ P+R MK NME+LIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVISDNHKVAPPSREAMKGNMEELIHHFKLFTEGIHVPSGECYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY +SDGANKPYR+KIR+PGFAHL ++ EM GHMISDVV IIGT DIVFGEIDR
Sbjct: 363 IYAMSDGANKPYRLKIRAPGFAHLAAMDEMSRGHMISDVVAIIGTMDIVFGEIDR 417
>gi|226939459|ref|YP_002794532.1| NADH dehydrogenase subunit D [Laribacter hongkongensis HLHK9]
gi|226714385|gb|ACO73523.1| NADH dehydrogenase I, D subunit [Laribacter hongkongensis HLHK9]
Length = 417
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/415 (77%), Positives = 375/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y LNFGPQHPAAHGVLRL+LEL+GEVV +ADPHIGLLHR TEKLAE +T+LQ++PY
Sbjct: 3 EIRNYTLNFGPQHPAAHGVLRLVLELDGEVVERADPHIGLLHRGTEKLAETKTFLQNVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDY+SMM NEHAYVMAIEKLL + +P+RAQYIRVMFDEITR+LNHL+W+G+H LDIG
Sbjct: 63 MDRLDYMSMMANEHAYVMAIEKLLGVDVPLRAQYIRVMFDEITRILNHLLWVGAHGLDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+DCYEAVSGARMHAAYYRPGGVYRDLP+ MPQY+ S I+N++
Sbjct: 123 AMTVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDSMPQYEFSKIKNDRELA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNENRQGSLLDFI+DFT+RFPK +DEYETLLTDNRIWKQR VGIGVVSPERAL +GFTG
Sbjct: 183 RLNENRQGSLLDFIDDFTSRFPKCVDEYETLLTDNRIWKQRTVGIGVVSPERALQLGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG++WD+RKKQPYE+Y+ L+FDIP+G NGD YDRYLVRIEE+RQSN+IIKQC+ W
Sbjct: 243 AMLRGSGIEWDVRKKQPYEVYDRLDFDIPVGVNGDCYDRYLVRIEELRQSNRIIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+K+ P R +MKSNME+LIHHFKLF+EG +VP GE Y +EHPKGEFG
Sbjct: 303 LRKNPGPVITDNHKVAPPCRADMKSNMEELIHHFKLFSEGMHVPEGEAYVGIEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PG+AHL S+ EM GHM++DVV+IIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGYAHLSSMDEMSRGHMLADVVSIIGTQDIVFGEIDR 417
>gi|254468716|ref|ZP_05082122.1| NADH dehydrogenase (quinone), D subunit [beta proteobacterium KB13]
gi|207087526|gb|EDZ64809.1| NADH dehydrogenase (quinone), D subunit [beta proteobacterium KB13]
Length = 417
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/415 (77%), Positives = 366/415 (88%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y +NFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE RTY+QS+PY
Sbjct: 3 EIKNYTMNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAENRTYIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHA+VMAIEK+LN+K+P+RAQYIRV+FDEITRLLNHL+W+G H+LD+G
Sbjct: 63 MDRLDYVSMMMNEHAFVMAIEKMLNLKVPVRAQYIRVLFDEITRLLNHLLWLGCHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LY FREREDL DCYEAVSGARMHAAYYRPGGVYRDLP+ MPQY+++ T
Sbjct: 123 AMSVFLYTFREREDLFDCYEAVSGARMHAAYYRPGGVYRDLPDHMPQYQNTRFSRPSETH 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNENRQGSLLDFIEDF RFP IDEYETLLTDNRIWKQR VGIGVVSPERA+ +GFTG
Sbjct: 183 KLNENRQGSLLDFIEDFATRFPGYIDEYETLLTDNRIWKQRTVGIGVVSPERAIELGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG++WDLRKKQPYE+Y+ L+FDIP+G GD YDRYLVRIEEMRQS +IKQC KW
Sbjct: 243 PMLRGSGIEWDLRKKQPYEVYDKLDFDIPVGVEGDCYDRYLVRIEEMRQSVHLIKQCTKW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVIS+N K P R +MK +ME +IHHFKLFTEGF++P GE Y+ VEHPKGEFG
Sbjct: 303 LRENSGPVISDNQKFAPPKRTDMKEDMESMIHHFKLFTEGFHLPKGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY+VSDGANKPYR+KIR+PGFAHL SL EM GHMISD+V IIGTQDIVFGEIDR
Sbjct: 363 IYMVSDGANKPYRLKIRAPGFAHLASLDEMTKGHMISDLVAIIGTQDIVFGEIDR 417
>gi|114330928|ref|YP_747150.1| NADH dehydrogenase subunit D [Nitrosomonas eutropha C91]
gi|122314156|sp|Q0AHJ7.1|NUOD_NITEC RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|114307942|gb|ABI59185.1| NADH dehydrogenase subunit D [Nitrosomonas eutropha C91]
Length = 417
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/415 (76%), Positives = 373/415 (89%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I++Y +NFGPQHPAAHGVLRL++EL+GEV+R+ADPHIGLLHRATEKLAE +TY+QS+PY
Sbjct: 3 DIRNYTMNFGPQHPAAHGVLRLVMELDGEVIRRADPHIGLLHRATEKLAENKTYIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIEKLL I +PIRAQYIRVMFDEITR+LNHL+W+G+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHAYVMAIEKLLQIDVPIRAQYIRVMFDEITRILNHLLWLGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LY FREREDL+DCYEAVSGAR+HAAYYRPGGVYRDLP+ MPQY+SS I + K T
Sbjct: 123 AMTVFLYTFREREDLMDCYEAVSGARLHAAYYRPGGVYRDLPDSMPQYRSSAIHDEKTTT 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
NENRQGSLLDFIEDFT+RFP +D+YETLLTDNRIWKQRLV IGVVSP+RA ++GF+G
Sbjct: 183 ARNENRQGSLLDFIEDFTHRFPGYVDDYETLLTDNRIWKQRLVDIGVVSPDRAKALGFSG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV WDLRKKQPYE+Y+ ++FDIP+G NGD YDRYLVRIEEMRQSN IIKQCI W
Sbjct: 243 PMLRGSGVAWDLRKKQPYEVYDQVDFDIPVGVNGDCYDRYLVRIEEMRQSNYIIKQCIDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+R N GPVI++N K+ P R++MK NME++IHHFKLFTEG +VP GE+Y+ VEHPKGEFG
Sbjct: 303 MRKNPGPVITSNFKVAPPPRLSMKQNMEEMIHHFKLFTEGMHVPRGEVYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY++SDGAN PYR+KIR+PGFAHL ++ EM GHMI+D+V IIGTQDIVFGEIDR
Sbjct: 363 IYIISDGANMPYRLKIRAPGFAHLAAMDEMARGHMIADLVAIIGTQDIVFGEIDR 417
>gi|424776534|ref|ZP_18203515.1| NADH dehydrogenase subunit D [Alcaligenes sp. HPC1271]
gi|422888354|gb|EKU30743.1| NADH dehydrogenase subunit D [Alcaligenes sp. HPC1271]
Length = 417
Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/415 (76%), Positives = 375/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE RT+LQ+LPY
Sbjct: 3 EIQNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEHRTFLQTLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAY MA+E+L+ +++P+RAQYIRVMFDEITR+LNHLM +GSH+LD+G
Sbjct: 63 MDRLDYVSMMVNEHAYCMAVERLVGVEVPLRAQYIRVMFDEITRILNHLMSVGSHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+DCYEAVSGAR+HAAYYRPGGVYRDLP MPQYK++ R++K K
Sbjct: 123 AMAVFLYAFREREDLMDCYEAVSGARLHAAYYRPGGVYRDLPGTMPQYKANKYRSDKELK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R GSLLDFIEDFTNRFP +DEYETLLTDNRIWKQRLVG+GVV P+RA ++GFTG
Sbjct: 183 AMNEARSGSLLDFIEDFTNRFPTCVDEYETLLTDNRIWKQRLVGVGVVDPDRAKALGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV+WDLRK QPYE+Y+ + FDIP+G+NGDSYDRYLVRI EMR+SN+II+QC++W
Sbjct: 243 PMLRGSGVEWDLRKMQPYEVYDRVEFDIPVGRNGDSYDRYLVRIAEMRESNRIIRQCVQW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPVI++N+K+ P+R MK+ MEDLIHHFKLF+EG +VP GE+Y+ VEHPKGEFG
Sbjct: 303 LRNNPGPVITDNHKVAPPSRERMKTGMEDLIHHFKLFSEGMHVPTGEVYAGVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDG NKPYR+KIR+PGF HLQ+L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGGNKPYRMKIRAPGFVHLQALDEMSRGHMIADAVTIIGTQDIVFGEIDR 417
>gi|393758480|ref|ZP_10347301.1| NADH dehydrogenase subunit D [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
gi|393164899|gb|EJC64951.1| NADH dehydrogenase subunit D [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
Length = 417
Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/415 (76%), Positives = 375/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE RT+LQ+LPY
Sbjct: 3 EIQNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEHRTFLQTLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAY MA+E+L+ +++P+RAQYIRVMFDEITR+LNHLM +GSH+LD+G
Sbjct: 63 MDRLDYVSMMVNEHAYCMAVERLVGVEVPLRAQYIRVMFDEITRILNHLMSVGSHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+DCYEAVSGAR+HAAYYRPGGVYRDLP MPQYK++ R++K K
Sbjct: 123 AMAVFLYAFREREDLMDCYEAVSGARLHAAYYRPGGVYRDLPGTMPQYKANKYRSDKELK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R GSLLDFIEDFTNRFP +DEYETLLTDNRIWKQRLVG+GVV P+RA ++GFTG
Sbjct: 183 AMNEARSGSLLDFIEDFTNRFPACVDEYETLLTDNRIWKQRLVGVGVVDPDRAKALGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV+WDLRK QPYE+Y+ + FDIP+G+NGDSYDRYLVRI EMR+SN+II+QC++W
Sbjct: 243 PMLRGSGVEWDLRKMQPYEVYDRVEFDIPVGRNGDSYDRYLVRIAEMRESNRIIRQCVQW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPVI++N+K+ P+R MK+ MEDLIHHFKLF+EG +VP GE+Y+ VEHPKGEFG
Sbjct: 303 LRNNPGPVITDNHKVAPPSRERMKTGMEDLIHHFKLFSEGMHVPTGEVYAGVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDG NKPYR+KIR+PGF HLQ+L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGGNKPYRMKIRAPGFVHLQALDEMSRGHMIADAVTIIGTQDIVFGEIDR 417
>gi|302879338|ref|YP_003847902.1| NADH dehydrogenase I subunit D [Gallionella capsiferriformans ES-2]
gi|302582127|gb|ADL56138.1| NADH dehydrogenase I, D subunit [Gallionella capsiferriformans
ES-2]
Length = 417
Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/415 (77%), Positives = 368/415 (88%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y +NFGPQHPAAHGVLRL+LEL+GEV+ +ADPHIGLLHRATEKLAE +T+LQS+PY
Sbjct: 3 EIKNYTMNFGPQHPAAHGVLRLVLELDGEVIVRADPHIGLLHRATEKLAEHKTFLQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSM+CNEHAYV AIEKL I +P+RAQYIRVMFDEITR+LNHLMW+G+H LDIG
Sbjct: 63 MDRLDYVSMLCNEHAYVQAIEKLAGIDVPLRAQYIRVMFDEITRILNHLMWLGAHGLDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LY FREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQY++S I N A K
Sbjct: 123 AMTVFLYCFREREDLMDAYEAVSGARMHAAYYRPGGVYRDLPDTMPQYEASKIHNAAAVK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+N NRQGSLLDF+EDFT RFP +DEYETLLTDNRIWKQR VGIG+V+PERAL++G TG
Sbjct: 183 KMNANRQGSLLDFLEDFTRRFPTYVDEYETLLTDNRIWKQRTVGIGIVTPERALALGMTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV+WDLRKKQPY Y+ ++FD+P+G NGDSYDRYLVR+EEMRQSN+IIKQCI W
Sbjct: 243 PMLRGSGVEWDLRKKQPYAAYDKVDFDVPVGVNGDSYDRYLVRVEEMRQSNRIIKQCIDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+++N+K +P R +MK NME+LIHHFKLFTEG VP GE Y+ VEHPKGEFG
Sbjct: 303 LRVNPGPVMTSNHKYAAPGRESMKQNMEELIHHFKLFTEGMRVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGF HL +L EM GHMI+DVVTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFPHLAALDEMARGHMIADVVTIIGTQDIVFGEIDR 417
>gi|187477544|ref|YP_785568.1| NADH dehydrogenase subunit D [Bordetella avium 197N]
gi|123513815|sp|Q2KV09.1|NUOD_BORA1 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|115422130|emb|CAJ48654.1| NADH dehydrogenase I chain D [Bordetella avium 197N]
Length = 418
Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/416 (77%), Positives = 374/416 (89%), Gaps = 1/416 (0%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHR TEKLAE +T++Q+LPY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAEHKTFIQALPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIEK+L ++ P+RAQYIRVMFDEITR+LNHLM +GSH+LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEKMLGVEAPLRAQYIRVMFDEITRILNHLMSLGSHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQY-KSSIIRNNKAT 457
AM V LYAFREREDL+DCYEAVSGARMHAAYYRPGGVYRDLP+ M QY ++S R++K
Sbjct: 123 AMAVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDTMAQYGETSKYRSDKEL 182
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
+ +N+ R GSLLDFIEDFTNRFP +DEYETLLTDNRIWKQRLVGIGVV P+RA ++GFT
Sbjct: 183 RAMNDARSGSLLDFIEDFTNRFPACVDEYETLLTDNRIWKQRLVGIGVVDPDRAKALGFT 242
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GPMLRGSGV WDLRK QPYE+Y+L++FD+P+G NGD YDRYLVR+ E+R+SN+II+QC++
Sbjct: 243 GPMLRGSGVAWDLRKTQPYEVYDLMDFDVPVGVNGDCYDRYLVRVAELRESNRIIRQCVE 302
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
WLR+N GPV+ N+KI P R MKSNME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEF
Sbjct: 303 WLRNNPGPVMIENHKIAPPKREAMKSNMEELIHHFKLFTEGFHVPPGEAYAAVEHPKGEF 362
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
GIYLVSDGANKPYR+KIR+PGFAHLQSL EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 GIYLVSDGANKPYRLKIRAPGFAHLQSLDEMSRGHMIADAVTIIGTQDIVFGEIDR 418
>gi|372489658|ref|YP_005029223.1| NADH dehydrogenase I subunit D [Dechlorosoma suillum PS]
gi|359356211|gb|AEV27382.1| NADH dehydrogenase I, D subunit [Dechlorosoma suillum PS]
Length = 417
Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/415 (77%), Positives = 368/415 (88%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRL+LEL+GEVV++ADPHIGLLHRATEKLAE RT++QS+PY
Sbjct: 3 EIRNYTMNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRATEKLAETRTWIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAY +A+EKLL I++P+RAQYIRVMFDEITRLLNHL+WIG H LD+G
Sbjct: 63 MDRLDYVSMMSNEHAYCLAVEKLLGIEVPVRAQYIRVMFDEITRLLNHLLWIGCHGLDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM ++LY FREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQY + ++ K
Sbjct: 123 AMAMVLYTFREREDLVDAYEAVSGARMHAAYYRPGGVYRDLPDRMPQYTENRFKSASTVK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNENR GSLLDF+EDFTNRFP +DEY TLLTDNRIWKQRLV +GVVSPERAL +GFTG
Sbjct: 183 TLNENRTGSLLDFLEDFTNRFPTYLDEYHTLLTDNRIWKQRLVNVGVVSPERALQLGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ WDLRKKQPYE+Y L+FDIP+G NGDSYDRYLVR+EEMRQSN+IIKQCI W
Sbjct: 243 AMLRGSGIAWDLRKKQPYEVYADLDFDIPVGVNGDSYDRYLVRMEEMRQSNRIIKQCIDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+K+ PAR MKSNME+LIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVITDNHKVAPPAREGMKSNMEELIHHFKLFTEGIHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY VSDGANKPYR+KIR+PG+AHL ++ EM GHMI+DVVTIIG+QDIVFGEIDR
Sbjct: 363 IYFVSDGANKPYRMKIRAPGYAHLAAMDEMARGHMIADVVTIIGSQDIVFGEIDR 417
>gi|120609953|ref|YP_969631.1| NADH dehydrogenase subunit D [Acidovorax citrulli AAC00-1]
gi|218534375|sp|A1TLL9.1|NUOD_ACIAC RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|120588417|gb|ABM31857.1| NADH dehydrogenase subunit D [Acidovorax citrulli AAC00-1]
Length = 417
Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/415 (76%), Positives = 370/415 (89%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEVV++ADPHIGLLHRATEKLAE +T++QSLPY
Sbjct: 3 EIKNYSLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRATEKLAEHKTFIQSLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAY +AIEKLL I +P+RAQYIRVMF EITRLLNHLMW+GSH D G
Sbjct: 63 MDRLDYVSMMCNEHAYCLAIEKLLGIDVPLRAQYIRVMFSEITRLLNHLMWLGSHGNDCG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+ +L+Y FREREDL D YEAVSGARMHAAY+RPGGVYRDLP+ MPQY++S +RN KA +
Sbjct: 123 SSTILIYTFREREDLFDMYEAVSGARMHAAYFRPGGVYRDLPDSMPQYQASKVRNAKAIE 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+LN+NRQGSLLDFI+DFT RFPK +DEYETLLTDNRIWKQR V IG+V+PERAL++G TG
Sbjct: 183 VLNQNRQGSLLDFIDDFTQRFPKCVDEYETLLTDNRIWKQRTVDIGIVTPERALNLGMTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPY+ Y+ + FDIP+GK GD YDRYLVR++EMRQSN+IIKQC+ W
Sbjct: 243 PMLRGSGIAWDLRKKQPYDAYDRVEFDIPVGKTGDCYDRYLVRVQEMRQSNRIIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L++N GPVI++N+K+ P+R +MKSNME+LIHHFKLFTEGF VP GE Y+ VEHPKGEFG
Sbjct: 303 LKANPGPVITDNHKVAPPSRESMKSNMEELIHHFKLFTEGFRVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL +L EM GHMI+D V IIGT DIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLATLDEMARGHMIADAVAIIGTMDIVFGEIDR 417
>gi|34496399|ref|NP_900614.1| NADH dehydrogenase subunit D [Chromobacterium violaceum ATCC 12472]
gi|81656634|sp|Q7NZH8.1|NUOD_CHRVO RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|34102252|gb|AAQ58618.1| NADH-ubiquinone oxidoreductase, chain D [Chromobacterium violaceum
ATCC 12472]
Length = 417
Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/415 (76%), Positives = 371/415 (89%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y LNFGPQHPAAHGVLRL+LEL+GEVV++ADPHIGLLHR TEKLAE +T++QSLPY
Sbjct: 3 EIRNYTLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRGTEKLAESKTFIQSLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAY +AIEK++ I++P RAQYIRVMF EITR+LNHL+WIG+H+LDIG
Sbjct: 63 MDRLDYVSMMCNEHAYCLAIEKMMGIEVPERAQYIRVMFAEITRILNHLLWIGAHALDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM + LYAFREREDL+DCYEAVSGARMHAAY+RPGGVYRDLP+ MPQY S I+N K
Sbjct: 123 AMTMFLYAFREREDLMDCYEAVSGARMHAAYFRPGGVYRDLPDSMPQYTVSKIKNAKELA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE R+GS+LDFIEDFT RFP +DEYETLLTDNRIWKQR VGIGVV+PERAL++G TG
Sbjct: 183 RLNEGRKGSMLDFIEDFTKRFPTYVDEYETLLTDNRIWKQRTVGIGVVTPERALNLGMTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRK QPY++Y+ ++FD+P+G GD YDRYLVR+EEMRQSN+II+QC+ W
Sbjct: 243 PMLRGSGIAWDLRKTQPYDVYDKMDFDVPVGVGGDCYDRYLVRVEEMRQSNRIIQQCVAW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPVI++N+K+ P+R MKSNMEDLIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 303 LRANPGPVITDNHKVAPPSREGMKSNMEDLIHHFKLFTEGMHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PG+AHL +L EM +GHMI+DVV IIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGYAHLAALDEMATGHMIADVVAIIGTQDIVFGEIDR 417
>gi|153871540|ref|ZP_02000686.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Beggiatoa sp. PS]
gi|152071989|gb|EDN69309.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Beggiatoa sp. PS]
Length = 417
Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/415 (77%), Positives = 369/415 (88%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y LNFGPQHPAAHGVLRL+LEL+GEVV +ADPHIGLLHR TEKLAE + + QS+PY
Sbjct: 3 EIRNYTLNFGPQHPAAHGVLRLVLELDGEVVERADPHIGLLHRGTEKLAETKPFNQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIEKLL I PIRAQYIRVMFDEITR+LNHL+WIG+H LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEKLLGITPPIRAQYIRVMFDEITRILNHLLWIGAHGLDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM + LYAFREREDL+DCYEAVSGAR+HAAYYRPGGVYRDLP+ MPQY+ S RN K
Sbjct: 123 AMTIFLYAFREREDLMDCYEAVSGARLHAAYYRPGGVYRDLPDTMPQYEKSQYRNKDDVK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNENR+GSLLDFIEDFTNRFPK +DEYETLLT+NRIW+QR VGIGVV+PERA ++GF+G
Sbjct: 183 RLNENREGSLLDFIEDFTNRFPKYVDEYETLLTENRIWRQRTVGIGVVTPERAQNLGFSG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG++WDLRKKQPYE+Y+ ++FDIP+G NGD YDRYLVR+EE RQSN+IIKQC+ W
Sbjct: 243 PMLRGSGIEWDLRKKQPYEVYDKVDFDIPVGVNGDCYDRYLVRMEEFRQSNRIIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+ +++KIT P R NMK ME LIHHFKLFTEG+ VP GE+YS +EHPKGEFG
Sbjct: 303 LRKNPGPVMVDDHKITPPPRENMKGGMESLIHHFKLFTEGYCVPEGEVYSAIEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL ++ EM GHMI+DVV IIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLAAMDEMAKGHMIADVVAIIGTQDIVFGEIDR 417
>gi|351731271|ref|ZP_08948962.1| NADH dehydrogenase subunit D [Acidovorax radicis N35]
Length = 417
Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/415 (76%), Positives = 370/415 (89%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEVV++ADPHIGLLHRATEKLAE +TY+QSLPY
Sbjct: 3 EIKNYSLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRATEKLAEHKTYIQSLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAY +AIEKLL +++PIRAQYIRVMF EITRLLNHLMW+GSH D G
Sbjct: 63 MDRLDYVSMMCNEHAYCLAIEKLLGLEVPIRAQYIRVMFSEITRLLNHLMWLGSHGNDCG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+ +L+Y FREREDL D YEAVSGARMHAAY+RPGGVYRDLP+ MPQYK S I+N KA +
Sbjct: 123 SSTILIYTFREREDLFDMYEAVSGARMHAAYFRPGGVYRDLPDSMPQYKVSKIKNAKALE 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+N+NRQGS+LDFI+DFT RFP +DEYETLLTDNRIWKQR VGIGVV PERAL++G TG
Sbjct: 183 AMNQNRQGSMLDFIDDFTQRFPACVDEYETLLTDNRIWKQRTVGIGVVPPERALNLGMTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRK QPY++Y+ ++FD+P+GK GD YDRYLVR++EMR+SN+IIKQC+ W
Sbjct: 243 PMLRGSGIAWDLRKTQPYDVYDRMDFDVPVGKTGDCYDRYLVRVQEMRESNRIIKQCVNW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPVI++N+K+ +P R +MKSNME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRANPGPVITDNHKVAAPDRESMKSNMEELIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL +L EM GHMI+D V IIGT DIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLATLDEMARGHMIADAVAIIGTMDIVFGEIDR 417
>gi|407938234|ref|YP_006853875.1| NADH dehydrogenase subunit D [Acidovorax sp. KKS102]
gi|407896028|gb|AFU45237.1| NADH dehydrogenase subunit D [Acidovorax sp. KKS102]
Length = 417
Score = 696 bits (1797), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/415 (76%), Positives = 370/415 (89%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEVV++ADPHIGLLHRATEKLAE +TY+QSLPY
Sbjct: 3 EIKNYSLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRATEKLAEHKTYIQSLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAY +AIEKLL +++P+RAQYIRVMF EITRLLNHLMW+GSH D G
Sbjct: 63 MDRLDYVSMMCNEHAYCLAIEKLLGLEVPVRAQYIRVMFSEITRLLNHLMWLGSHGNDCG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+ +L+Y FREREDL D YEAVSGARMHAAY+RPGGVYRDLP+ MPQYK S I+N KA +
Sbjct: 123 SSTILIYTFREREDLFDMYEAVSGARMHAAYFRPGGVYRDLPDSMPQYKVSKIKNAKALE 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN+NRQGSLLDFI+DFT RFP +DEYETLLTDNRIWKQR VGIGVV PERAL++G TG
Sbjct: 183 ALNQNRQGSLLDFIDDFTQRFPGCVDEYETLLTDNRIWKQRTVGIGVVPPERALNLGMTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRK QPY+ Y+ ++FD+P+GK GD YDRYLVR++EMR+SN+IIKQC+ W
Sbjct: 243 PMLRGSGIAWDLRKTQPYDAYDRVDFDVPVGKTGDCYDRYLVRVQEMRESNRIIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L++N GPVI++N+K+ +PAR +MKSNME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LKANPGPVITDNHKVAAPARESMKSNMEELIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL +L EM GHMI+D V IIGT DIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLATLDEMARGHMIADAVAIIGTMDIVFGEIDR 417
>gi|319794665|ref|YP_004156305.1| NADH dehydrogenase i, d subunit [Variovorax paradoxus EPS]
gi|315597128|gb|ADU38194.1| NADH dehydrogenase I, D subunit [Variovorax paradoxus EPS]
Length = 417
Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/415 (76%), Positives = 371/415 (89%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE RT++QSLPY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESRTFIQSLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAY +AIE+++ + +PIRAQYIRVMF EITRLLNHL+W+G+H LD G
Sbjct: 63 MDRLDYVSMMSNEHAYCLAIERMMGLDVPIRAQYIRVMFAEITRLLNHLLWLGAHGLDCG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +L+Y FREREDL D YEAVSGARMHAAY+RPGGVYRDLP+ MPQYK S I+N KA +
Sbjct: 123 AMNMLIYCFREREDLFDMYEAVSGARMHAAYFRPGGVYRDLPDAMPQYKVSKIKNAKAIE 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNENRQGSLLDFI+DF RFPK +DEYETLLTDNRIWKQR VGIGVV+PERAL++GFTG
Sbjct: 183 RLNENRQGSLLDFIDDFCKRFPKMVDEYETLLTDNRIWKQRTVGIGVVTPERALNLGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG++WDLRKKQPY++Y+ + FD+P+GK GD YDRYLVR+EEMRQ+NKII+QC W
Sbjct: 243 PMLRGSGIEWDLRKKQPYDVYDQMQFDVPVGKTGDCYDRYLVRVEEMRQANKIIQQCSAW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+K+ +PAR +MK+NME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRVNPGPVITDNHKVAAPARESMKANMEELIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGF HL +L EM GHMI+D V +IGT DIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFPHLAALDEMSRGHMIADAVAVIGTMDIVFGEIDR 417
>gi|451823208|ref|YP_007459482.1| NADH dehydrogenase I subunit D [Candidatus Kinetoplastibacterium
desouzaii TCC079E]
gi|451776008|gb|AGF47049.1| NADH dehydrogenase I subunit D [Candidatus Kinetoplastibacterium
desouzaii TCC079E]
Length = 418
Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/418 (78%), Positives = 367/418 (87%), Gaps = 2/418 (0%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
++IK+Y LNFGPQHPAAHGVLRL+LEL+GEVV++ADPHIGLLHRATEKL E +TY+Q+LP
Sbjct: 1 MDIKTYTLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRATEKLIESKTYIQALP 60
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
YMDRLDYVSMMCNEHAYVMAIEKLL I +PIRAQYIRVMFDEITR+LNHLM +GSH+LD+
Sbjct: 61 YMDRLDYVSMMCNEHAYVMAIEKLLGIDVPIRAQYIRVMFDEITRVLNHLMSLGSHALDV 120
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKS--SIIRNNK 455
GAM V LYAFREREDL+DCYEAVSGARMHAAYYRPGGVYRDLP+ MPQY S I K
Sbjct: 121 GAMAVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDSMPQYSSVSENIHGKK 180
Query: 456 ATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMG 515
+ +N R GSLLDFI DFT RFP IDEYE LLT+NRIWKQRLVG+GVVSPERA ++G
Sbjct: 181 DFERMNAARSGSLLDFIYDFTERFPGCIDEYENLLTNNRIWKQRLVGVGVVSPERAKALG 240
Query: 516 FTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQC 575
FTGPMLRGSGV WDLRK QPYEIY L+FDIP+G NGD YDRYLVRI EMR+SNKII+QC
Sbjct: 241 FTGPMLRGSGVVWDLRKNQPYEIYQDLDFDIPVGVNGDCYDRYLVRIAEMRESNKIIRQC 300
Query: 576 IKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
+KWLR N G VI+ N K T P R+NMK+ MEDLIHHFK F+EGF P+GE+YS +EHPKG
Sbjct: 301 VKWLRENPGVVITENCKYTPPKRVNMKTGMEDLIHHFKFFSEGFSAPVGEVYSSIEHPKG 360
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFGIYL+SDGANKPYR+KIR+PGFAHLQSL EM +GHMISDVVTIIGTQDIVFGEIDR
Sbjct: 361 EFGIYLLSDGANKPYRVKIRAPGFAHLQSLEEMSTGHMISDVVTIIGTQDIVFGEIDR 418
>gi|291613541|ref|YP_003523698.1| NADH dehydrogenase I, D subunit [Sideroxydans lithotrophicus ES-1]
gi|291583653|gb|ADE11311.1| NADH dehydrogenase I, D subunit [Sideroxydans lithotrophicus ES-1]
Length = 417
Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/415 (77%), Positives = 367/415 (88%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK+Y +NFGPQHPAAHGVLRL+LEL+GEV+ +ADPH+GLLHRATEKLAE +T+LQ++PY
Sbjct: 3 DIKNYTMNFGPQHPAAHGVLRLVLELDGEVIERADPHVGLLHRATEKLAEHKTFLQAVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIEKL I++PIRAQYIRVM+DEITR+LNHL+W+G+ +D+G
Sbjct: 63 MDRLDYVSMMLNEHAYVMAIEKLAGIEVPIRAQYIRVMYDEITRILNHLLWLGASGIDLG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM + Y FREREDLLD YEAVSGAR+HAAYYRPGGVYRDLP+ MPQY+ S I N A K
Sbjct: 123 AMTMFFYTFREREDLLDAYEAVSGARLHAAYYRPGGVYRDLPDSMPQYEVSKIHNAAAVK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
NENRQGSLLDF+EDFTNRFP +DEYETLLTDNRIWKQR VGIGVVSPERAL+MGFTG
Sbjct: 183 KKNENRQGSLLDFLEDFTNRFPGYVDEYETLLTDNRIWKQRTVGIGVVSPERALAMGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV WDLRKKQPYE+Y+ L+FDIP+G GD YDRYLVR+EEMRQSN+IIKQCI W
Sbjct: 243 PMLRGSGVVWDLRKKQPYEVYDRLDFDIPVGVEGDCYDRYLVRVEEMRQSNRIIKQCIDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV++++ K P R +MK NME+LIHHFKLFTEGF+VP GE+YS VEH KGEFG
Sbjct: 303 LRKNPGPVMTDDLKYAPPQRESMKQNMEELIHHFKLFTEGFHVPAGEVYSAVEHAKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+ GFAHL SL EM+ GHMI+DVV IIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRMKIRAAGFAHLASLDEMVRGHMIADVVAIIGTQDIVFGEIDR 417
>gi|365093686|ref|ZP_09330747.1| NADH dehydrogenase subunit D [Acidovorax sp. NO-1]
gi|363414170|gb|EHL21324.1| NADH dehydrogenase subunit D [Acidovorax sp. NO-1]
Length = 417
Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/415 (76%), Positives = 371/415 (89%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEVV++ADPHIGLLHRATEKLAE +TY+QSLPY
Sbjct: 3 EIKNYSLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRATEKLAEHKTYIQSLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAY +AIEKLL +++P+RAQYIRVMF EITRLLNHLMW+GSH D G
Sbjct: 63 MDRLDYVSMMCNEHAYCLAIEKLLGLEVPLRAQYIRVMFSEITRLLNHLMWLGSHGNDCG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+ +L+Y FREREDL D YEAVSGARMHAAY+RPGGVYRDLP+ MPQYK S I+N KA +
Sbjct: 123 SSTILIYTFREREDLFDMYEAVSGARMHAAYFRPGGVYRDLPDSMPQYKVSKIKNAKALE 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+N+NRQGSLLDFI+DFT RFP +DEYETLLTDNRIWKQR VGIGVV PERAL++G TG
Sbjct: 183 AMNQNRQGSLLDFIDDFTQRFPGCVDEYETLLTDNRIWKQRTVGIGVVPPERALNLGMTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PM+RGSG+ WDLRK QPY++Y+ ++FD+P+GK GD YDRYLVR++EMR+SN+IIKQC+ W
Sbjct: 243 PMIRGSGIAWDLRKTQPYDVYDRVDFDVPVGKTGDCYDRYLVRVQEMRESNRIIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L++N GPVI++N+K+ +PAR +MKSNME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LKANPGPVITDNHKVAAPARESMKSNMEELIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL +L EM GHMI+D V IIGT DIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLATLDEMARGHMIADAVAIIGTMDIVFGEIDR 417
>gi|337280288|ref|YP_004619760.1| NADH:ubiquinone oxidoreductase subunit 4 or 49 kDa subunit, chain D
[Ramlibacter tataouinensis TTB310]
gi|334731365|gb|AEG93741.1| Candidate NADH:ubiquinone oxidoreductase subunit 4 or 49 kDa
subunit, chain D [Ramlibacter tataouinensis TTB310]
Length = 417
Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/415 (75%), Positives = 372/415 (89%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +TY+QSLPY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAETKTYIQSLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAY +AIEK++ I++PIRAQYIRVMF EITRLLNHL+W+G+H LD G
Sbjct: 63 MDRLDYVSMMCNEHAYCLAIEKMMGIEVPIRAQYIRVMFAEITRLLNHLLWLGAHGLDCG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +L+Y FREREDL D YEAVSGARMHAAY+RPGGVYRDLP+ MPQY++S +RN +A +
Sbjct: 123 AMNMLIYCFREREDLFDMYEAVSGARMHAAYFRPGGVYRDLPDSMPQYQASKVRNERAIR 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNENR G+LLDFI+DF RFPK +DEYETLLTDNRIWKQR VGIGVV+PERAL++GFTG
Sbjct: 183 QLNENRSGTLLDFIDDFARRFPKYVDEYETLLTDNRIWKQRTVGIGVVAPERALNLGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPYE+Y+ ++FDIP+G GD YDRYLVR++EMR+SN+II+QC+ W
Sbjct: 243 PMLRGSGIAWDLRKKQPYEVYDKMDFDIPVGATGDCYDRYLVRVQEMRESNRIIRQCVAW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPVI++N+K+ P R +MK+NME+LIHHFKLF+EGF VP GE Y+ VEHPKGEFG
Sbjct: 303 LRANPGPVITDNHKVAPPDRESMKANMEELIHHFKLFSEGFRVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY+VSDGANKPYR+KIR+PGFAHL SL EM GHMI+D V IIGT DIVFGEIDR
Sbjct: 363 IYIVSDGANKPYRLKIRAPGFAHLASLDEMGRGHMIADAVAIIGTMDIVFGEIDR 417
>gi|326316102|ref|YP_004233774.1| NADH dehydrogenase I subunit D [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323372938|gb|ADX45207.1| NADH dehydrogenase I, D subunit [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 417
Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/415 (76%), Positives = 370/415 (89%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEVV++ADPHIGLLHRATEKLAE +T++QSLPY
Sbjct: 3 EIKNYSLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRATEKLAEHKTFIQSLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAY +AIEKLL I +P+RAQYIRVMF EITRLLNHLMW+GSH D G
Sbjct: 63 MDRLDYVSMMCNEHAYCLAIEKLLGIDVPLRAQYIRVMFSEITRLLNHLMWLGSHGNDCG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+ +L+Y FREREDL D YEAVSGARMHAAY+RPGGVYRDLP+ MPQY++S +RN KA +
Sbjct: 123 SSTILIYTFREREDLFDMYEAVSGARMHAAYFRPGGVYRDLPDSMPQYQASKVRNAKAIE 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
++N+NR+GSLLDFI+DFT RFPK +DEYETLLTDNRIWKQR V IG+V+PERAL++G TG
Sbjct: 183 VMNQNRRGSLLDFIDDFTQRFPKCVDEYETLLTDNRIWKQRTVDIGIVTPERALNLGMTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPY+ Y+ + FDIP+GK GD YDRYLVR++EMRQSN+IIKQC+ W
Sbjct: 243 PMLRGSGIAWDLRKKQPYDAYDRVEFDIPVGKTGDCYDRYLVRVQEMRQSNRIIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L++N GPVI++N+K+ P+R +MKSNME+LIHHFKLFTEGF VP GE Y+ VEHPKGEFG
Sbjct: 303 LKANPGPVITDNHKVAPPSRESMKSNMEELIHHFKLFTEGFRVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL +L EM GHMI+D V IIGT DIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLATLDEMARGHMIADAVAIIGTMDIVFGEIDR 417
>gi|456063083|ref|YP_007502053.1| NADH dehydrogenase subunit D [beta proteobacterium CB]
gi|455440380|gb|AGG33318.1| NADH dehydrogenase subunit D [beta proteobacterium CB]
Length = 417
Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/415 (76%), Positives = 369/415 (88%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE RT++Q++PY
Sbjct: 3 QIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAETRTWIQNVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIEKLL + +P+RAQYIRVM+DE+TRLLNHL+WIG H LD+G
Sbjct: 63 MDRLDYVSMMSNEHAYVMAIEKLLQVDVPLRAQYIRVMYDELTRLLNHLLWIGCHGLDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFR+RED+ D YEAVSGARMHAAYYRPGGVYRDLP M QY S IR+ A K
Sbjct: 123 AMAVFLYAFRDREDIFDMYEAVSGARMHAAYYRPGGVYRDLPTQMAQYSKSKIRSTSAIK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNENR G+LLDFIE F+N F N+DEY LLTDNRIWKQRLVGIGVVSPERAL +GFTG
Sbjct: 183 RLNENRSGTLLDFIEQFSNGFDANVDEYCNLLTDNRIWKQRLVGIGVVSPERALQLGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG++WDLRKKQPYE Y+ L+FDIP+G NGDSYDRYLVR+EEMRQSN+IIKQC+ W
Sbjct: 243 PMLRGSGIEWDLRKKQPYETYDKLDFDIPVGVNGDSYDRYLVRMEEMRQSNRIIKQCVAW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L++N GPV+S+N+K++ P R++MK+NME+LIHHFKLFTEG +VP GE YS VEHPKGEFG
Sbjct: 303 LKANDGPVMSDNHKVSPPKRVDMKTNMEELIHHFKLFTEGMHVPDGEAYSAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYL+SDGANKPYR+KIR+PGF HL ++ EM GHM++D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLISDGANKPYRLKIRAPGFVHLSAMDEMSRGHMLADAVTIIGTQDIVFGEIDR 417
>gi|398812116|ref|ZP_10570892.1| NADH dehydrogenase I, D subunit [Variovorax sp. CF313]
gi|398078882|gb|EJL69764.1| NADH dehydrogenase I, D subunit [Variovorax sp. CF313]
Length = 417
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/415 (76%), Positives = 371/415 (89%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE RT++QSLPY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESRTFIQSLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAY +AIE+++ +++PIRAQYIRVMF EITRLLNHL+W+G+H LD G
Sbjct: 63 MDRLDYVSMMSNEHAYCLAIERMMGLEVPIRAQYIRVMFAEITRLLNHLLWLGAHGLDCG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +L+Y FREREDL D YEAVSGARMHAAY+RPGGVYRDLP+ MPQYK S I+N KA +
Sbjct: 123 AMNMLIYCFREREDLFDMYEAVSGARMHAAYFRPGGVYRDLPDAMPQYKVSKIKNAKAIE 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE+RQGSLLDFI+ F RFPK +DEYETLLTDNRIWKQR VGIGVV+PERAL++GFTG
Sbjct: 183 RLNEDRQGSLLDFIDAFCKRFPKMVDEYETLLTDNRIWKQRTVGIGVVTPERALNLGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV+WDLRKKQPY++Y + FD+P+GK GD YDRYLVR+EEMRQ+NKII+QC W
Sbjct: 243 PMLRGSGVEWDLRKKQPYDVYGQMQFDVPVGKTGDCYDRYLVRVEEMRQANKIIQQCSAW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPVI++N+K+ +PAR +MK+NME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRANPGPVITDNHKVAAPARESMKANMEELIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGF HL +L EM GHMI+D V +IGT DIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFPHLAALDEMSRGHMIADAVAVIGTMDIVFGEIDR 417
>gi|239816480|ref|YP_002945390.1| NADH dehydrogenase subunit D [Variovorax paradoxus S110]
gi|239803057|gb|ACS20124.1| NADH dehydrogenase I, D subunit [Variovorax paradoxus S110]
Length = 417
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/415 (76%), Positives = 370/415 (89%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE RT++QSLPY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESRTFIQSLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAY +AIE+++ + +PIRAQYIRVMF EITRLLNHL+W+G+H LD G
Sbjct: 63 MDRLDYVSMMSNEHAYCLAIERMMGLDVPIRAQYIRVMFAEITRLLNHLLWLGAHGLDCG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +L+Y FREREDL D YEAVSGARMHAAY+RPGGVYRDLP+ MPQYK S I+N KA +
Sbjct: 123 AMNMLIYCFREREDLFDMYEAVSGARMHAAYFRPGGVYRDLPDAMPQYKVSKIKNAKAIE 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNENRQGSLLDFI+DF RFP +DEYETLLTDNRIWKQR VGIGVV+PERAL++GFTG
Sbjct: 183 KLNENRQGSLLDFIDDFCKRFPGMVDEYETLLTDNRIWKQRTVGIGVVTPERALNLGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV+WDLRKKQPY++Y+ + FD+P+GK GD YDRYLVR+EEMRQ+N+II+QC W
Sbjct: 243 PMLRGSGVEWDLRKKQPYDVYDQMQFDVPVGKTGDCYDRYLVRVEEMRQANRIIQQCSAW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPVI+ N+K+ +PAR +MK+NME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRANPGPVITGNHKVAAPARESMKANMEELIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGF HL +L EM GHMI+D V +IGT DIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFPHLAALDEMSRGHMIADAVAVIGTMDIVFGEIDR 417
>gi|375106897|ref|ZP_09753158.1| NADH dehydrogenase I, D subunit [Burkholderiales bacterium
JOSHI_001]
gi|374667628|gb|EHR72413.1| NADH dehydrogenase I, D subunit [Burkholderiales bacterium
JOSHI_001]
Length = 417
Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/415 (75%), Positives = 370/415 (89%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +TY+QSLPY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESKTYIQSLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAY +AIEKL+ I++P+RAQYIRVMF EITRLLNHLMW+G+H LD G
Sbjct: 63 MDRLDYVSMMCNEHAYCLAIEKLMGIQVPVRAQYIRVMFSEITRLLNHLMWLGAHGLDCG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM + +Y FREREDL D YEAVSGARMHAAY+RPGGVYRDLP+ MPQYK S I+N +A
Sbjct: 123 AMNMFVYCFREREDLFDMYEAVSGARMHAAYFRPGGVYRDLPDSMPQYKVSKIKNQRAID 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN+NRQG+LLD+I+DF RFP +DEYETLLTDNRIWKQR VGIGVV+PERAL++G TG
Sbjct: 183 ALNQNRQGTLLDYIDDFCRRFPTQVDEYETLLTDNRIWKQRTVGIGVVTPERALNLGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRK QPY++Y ++FD+ +G NGD+YDRYLVR+EEMRQSN+II+QC+ W
Sbjct: 243 PMLRGSGIAWDLRKNQPYDVYGQVDFDLALGVNGDTYDRYLVRVEEMRQSNRIIQQCVAW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPVI++N+K+ P+R++MK++ME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRANPGPVITDNHKVAPPSRVDMKTSMEELIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL +L EM GHMI+D V IIGT DIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLAALDEMSRGHMIADAVAIIGTMDIVFGEIDR 417
>gi|429462619|ref|YP_007184082.1| NADH dehydrogenase subunit D [Candidatus Kinetoplastibacterium
crithidii (ex Angomonas deanei ATCC 30255)]
gi|451811625|ref|YP_007448080.1| NADH dehydrogenase I subunit D [Candidatus Kinetoplastibacterium
crithidii TCC036E]
gi|429338133|gb|AFZ82556.1| NADH dehydrogenase subunit D [Candidatus Kinetoplastibacterium
crithidii (ex Angomonas deanei ATCC 30255)]
gi|451776783|gb|AGF47782.1| NADH dehydrogenase I subunit D [Candidatus Kinetoplastibacterium
crithidii TCC036E]
Length = 418
Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/418 (78%), Positives = 366/418 (87%), Gaps = 2/418 (0%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
++IK+Y LNFGPQHPAAHGVLRLILEL GEVV+KADPHIGLLHRATEKL E +TY+Q LP
Sbjct: 1 MDIKTYTLNFGPQHPAAHGVLRLILELNGEVVQKADPHIGLLHRATEKLIENKTYIQGLP 60
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
YMDRLDYVSMMCNEHAYVMAIEKLL I++P+RAQYIRVMFDEITR+LNHLM +GSH+LD+
Sbjct: 61 YMDRLDYVSMMCNEHAYVMAIEKLLGIEVPLRAQYIRVMFDEITRILNHLMSLGSHALDV 120
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSI--IRNNK 455
GAM V LYAFREREDL+DCYEAVSGARMHAAYYRPGGVYRDLP MP Y S IRN K
Sbjct: 121 GAMAVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPNSMPMYNDSSKEIRNKK 180
Query: 456 ATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMG 515
+NE R GSLLDFI DFT RFPK IDEYE+LLTDNRIWKQRLVG+GVVSP+RA ++G
Sbjct: 181 DFDRMNEARSGSLLDFIYDFTERFPKCIDEYESLLTDNRIWKQRLVGVGVVSPDRAKALG 240
Query: 516 FTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQC 575
FTGPMLRGSGV WDLRK QPYE+Y+ L+FDIPIG NGD YDRYLVR+ EMR+SNKII+QC
Sbjct: 241 FTGPMLRGSGVVWDLRKNQPYEVYDNLSFDIPIGVNGDCYDRYLVRMAEMRESNKIIRQC 300
Query: 576 IKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
I WLR+N G VI++N K P R +MK+ ME+LIHHFK F+EGF +P GE YS VEHPKG
Sbjct: 301 IDWLRNNTGAVIADNCKYVPPKRTDMKTGMEELIHHFKFFSEGFCIPAGEAYSSVEHPKG 360
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFGIY++SDGANKPYR+KIR+PGFAHLQSL EM GHMISDVVTIIGTQDIVFGEIDR
Sbjct: 361 EFGIYIISDGANKPYRVKIRAPGFAHLQSLEEMSKGHMISDVVTIIGTQDIVFGEIDR 418
>gi|451812354|ref|YP_007448808.1| NADH dehydrogenase I subunit D [Candidatus Kinetoplastibacterium
galatii TCC219]
gi|451778256|gb|AGF49204.1| NADH dehydrogenase I subunit D [Candidatus Kinetoplastibacterium
galatii TCC219]
Length = 418
Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/418 (77%), Positives = 375/418 (89%), Gaps = 2/418 (0%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
++IK+Y LNFGPQHPAAHGVLRLILEL+GEVV +ADPHIGLLHRATEKL E +TY+Q LP
Sbjct: 1 MDIKTYTLNFGPQHPAAHGVLRLILELDGEVVCRADPHIGLLHRATEKLMESKTYIQGLP 60
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
YMDRLDYVSMMCNEHAYVMAIEK+L I +P+RA+YIRVMFDEITR+LNHLM +GSH+LD+
Sbjct: 61 YMDRLDYVSMMCNEHAYVMAIEKMLGIDVPLRAKYIRVMFDEITRILNHLMSLGSHALDV 120
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSI--IRNNK 455
GAM V LYAFREREDL+DCYEAVSGARMHAAYYRPGGVYRDLP+ MP+Y+ S +R+NK
Sbjct: 121 GAMAVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDNMPKYQKSSKKVRSNK 180
Query: 456 ATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMG 515
+N+NR+GSLLDFIEDFT RFP IDEYETLLTDNRIWKQRLVGIGVVSPERA +G
Sbjct: 181 DFLYMNKNREGSLLDFIEDFTVRFPVCIDEYETLLTDNRIWKQRLVGIGVVSPERAKELG 240
Query: 516 FTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQC 575
F+GPMLRGSGV+WD+RK QPYE+Y+ L+FD+PIG NGD YDRYLVRI EMR+SNKII QC
Sbjct: 241 FSGPMLRGSGVEWDIRKTQPYEVYSELDFDVPIGLNGDCYDRYLVRIAEMRESNKIISQC 300
Query: 576 IKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
I+WLR+N GPV+ ++ K + P R +KS ME+LIHHFK F+EGF++P+GE+YS VEHPKG
Sbjct: 301 IQWLRNNPGPVMIDSCKFSPPKRSEIKSGMEELIHHFKFFSEGFHLPVGEVYSAVEHPKG 360
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFGIY++SDGANKPYRIKIR+PGF+HLQSL EM SGHM++DVVTIIGTQDIVFGEIDR
Sbjct: 361 EFGIYILSDGANKPYRIKIRAPGFSHLQSLEEMSSGHMLADVVTIIGTQDIVFGEIDR 418
>gi|145589231|ref|YP_001155828.1| NADH dehydrogenase subunit D [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|229891296|sp|A4SXQ0.1|NUOD_POLSQ RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|145047637|gb|ABP34264.1| NADH dehydrogenase subunit D [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
Length = 417
Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/417 (75%), Positives = 371/417 (88%)
Query: 277 VIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSL 336
+ +IK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE RT++Q++
Sbjct: 1 MTKIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAETRTWIQNV 60
Query: 337 PYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLD 396
PYMDRLDYVSMM NEHAYV+AIEKLL + +P+RAQYIRVMFDE+TRLLNHL+WIG H LD
Sbjct: 61 PYMDRLDYVSMMSNEHAYVLAIEKLLQVDVPLRAQYIRVMFDELTRLLNHLLWIGCHGLD 120
Query: 397 IGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKA 456
+GAM V LYAFR+RED+ D YEAVSGARMHAAYYRPGGVYRDLP+ M QY S IR+ A
Sbjct: 121 VGAMAVFLYAFRDREDIFDMYEAVSGARMHAAYYRPGGVYRDLPDQMAQYSKSKIRSASA 180
Query: 457 TKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGF 516
K LNENR G+LLDFI+ FTN F N+DEY LLTDNRIWKQRLV IG+V+PERAL +GF
Sbjct: 181 IKRLNENRSGTLLDFIDQFTNGFDANVDEYCNLLTDNRIWKQRLVNIGIVTPERALQLGF 240
Query: 517 TGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCI 576
TGPMLRGSG++WDLRKKQPYE+Y+ L+FDIP+G NGDSYDRYLVR+EEMRQSN+IIKQC+
Sbjct: 241 TGPMLRGSGIEWDLRKKQPYEVYDRLDFDIPVGVNGDSYDRYLVRMEEMRQSNRIIKQCV 300
Query: 577 KWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
WL++N GPV+S+N+K++ P R++MK+NME+LIHHFKLFTEG +VP GE YS VEHPKGE
Sbjct: 301 AWLKANSGPVMSDNHKVSPPKRVDMKTNMEELIHHFKLFTEGMHVPNGEAYSAVEHPKGE 360
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FGIYL+SDGANKPYR+KIR+PGF HL ++ EM GHM++D VTIIGTQDIVFGEIDR
Sbjct: 361 FGIYLISDGANKPYRMKIRAPGFVHLSAMDEMSRGHMLADAVTIIGTQDIVFGEIDR 417
>gi|241763291|ref|ZP_04761348.1| NADH dehydrogenase I, D subunit [Acidovorax delafieldii 2AN]
gi|241367566|gb|EER61853.1| NADH dehydrogenase I, D subunit [Acidovorax delafieldii 2AN]
Length = 417
Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/415 (76%), Positives = 369/415 (88%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEVV++ADPHIGLLHRATEKLAE +TY+QSLPY
Sbjct: 3 EIKNYSLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRATEKLAEHKTYIQSLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAY +AIEKLL I++P+RAQYIRVMF EITRLLNHLMW+GSH D G
Sbjct: 63 MDRLDYVSMMSNEHAYCLAIEKLLGIEVPVRAQYIRVMFAEITRLLNHLMWLGSHGNDCG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+ +L+Y FREREDL D YEAVSGARMHAAY+RPGGVYRDLP+ MPQYK S I+N KA +
Sbjct: 123 SSTILIYTFREREDLFDMYEAVSGARMHAAYFRPGGVYRDLPDSMPQYKVSKIKNAKALE 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+N+NR+GSLLDFI+DFT RFP +DEYETLLTDNRIWKQR VGIGVVSPERAL++G TG
Sbjct: 183 AMNQNRKGSLLDFIDDFTRRFPGCMDEYETLLTDNRIWKQRTVGIGVVSPERALNLGMTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRK QPY++Y+ ++FD+P+GK GD YDRYLVRI+EMR+SN+IIKQC+ W
Sbjct: 243 PMLRGSGIAWDLRKTQPYDVYDRVDFDVPVGKTGDCYDRYLVRIQEMRESNRIIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPVI++N+KI P R +MKSNME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRANPGPVITDNHKIAPPDRESMKSNMEELIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL +L EM GHMI+D V IIGT DIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLATLDEMARGHMIADAVAIIGTMDIVFGEIDR 417
>gi|451936592|ref|YP_007460446.1| NADH dehydrogenase I subunit D [Candidatus Kinetoplastibacterium
oncopeltii TCC290E]
gi|451777515|gb|AGF48490.1| NADH dehydrogenase I subunit D [Candidatus Kinetoplastibacterium
oncopeltii TCC290E]
Length = 418
Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/418 (76%), Positives = 377/418 (90%), Gaps = 2/418 (0%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
++IK+Y LNFGPQHPAAHGVLRLILEL+GEVV +ADPHIGLLHRATEKL E +TY+Q LP
Sbjct: 1 MDIKTYTLNFGPQHPAAHGVLRLILELDGEVVCRADPHIGLLHRATEKLIESKTYIQGLP 60
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
YMDRLDYVSMMCNEHAYVMAIEK+L I++P+RA+YIRVMFDEITR+LNHLM +GSH+LD+
Sbjct: 61 YMDRLDYVSMMCNEHAYVMAIEKMLGIEVPLRAKYIRVMFDEITRVLNHLMSLGSHALDV 120
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSI--IRNNK 455
GAM V LYAFREREDL+DCYEAVSGARMHAAYYRPGGVYRDLP+ MP+YK S +R++K
Sbjct: 121 GAMAVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDNMPKYKKSSKKVRSDK 180
Query: 456 ATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMG 515
+N+NR+GSLLDFIEDFT RFPK IDEYETLLTDNRIWKQRLVGIGVVSPERA +G
Sbjct: 181 DFIYMNKNREGSLLDFIEDFTVRFPKCIDEYETLLTDNRIWKQRLVGIGVVSPERAKELG 240
Query: 516 FTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQC 575
F+GPMLRGSGV+WD+RK QPYE+Y+ L+F++PIG NGD YDRYLVR+ EMR+SNKII QC
Sbjct: 241 FSGPMLRGSGVEWDIRKNQPYEVYSDLDFNVPIGINGDCYDRYLVRVAEMRESNKIISQC 300
Query: 576 IKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
++WL +N GPVI++N K + P R +K+ ME+LIHHFK F+EGF++P+GE+YS VEHPKG
Sbjct: 301 VQWLNNNPGPVITSNCKFSPPKRARIKAGMEELIHHFKFFSEGFHLPVGEVYSSVEHPKG 360
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFGIY++SDGANKPYR+KIR+PGF+HLQSL EM SGHM++DVVTIIGTQDIVFGEIDR
Sbjct: 361 EFGIYILSDGANKPYRVKIRAPGFSHLQSLEEMSSGHMLADVVTIIGTQDIVFGEIDR 418
>gi|395004003|ref|ZP_10388092.1| NADH dehydrogenase I, D subunit [Acidovorax sp. CF316]
gi|394318103|gb|EJE54573.1| NADH dehydrogenase I, D subunit [Acidovorax sp. CF316]
Length = 417
Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/415 (76%), Positives = 369/415 (88%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEVV++ADPHIGLLHRATEKLAE +TY+QSLPY
Sbjct: 3 EIKNYSLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRATEKLAEHKTYIQSLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAY +AIEKLL +++P RAQYIRVMF EITRLLNHLMW+GSH D G
Sbjct: 63 MDRLDYVSMMCNEHAYCLAIEKLLGLEVPERAQYIRVMFSEITRLLNHLMWLGSHGNDCG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+ +L+Y FREREDL D YEAVSGARMHAAY+RPGGVYRDLP+ MPQYK S I+N KA +
Sbjct: 123 SSTILIYTFREREDLFDMYEAVSGARMHAAYFRPGGVYRDLPDSMPQYKVSKIKNAKALE 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+N+NR+GSLLDFI+DFT RFP +DEYETLLTDNRIWKQR VGIGVV PERAL++G TG
Sbjct: 183 AMNQNRKGSLLDFIDDFTKRFPGCVDEYETLLTDNRIWKQRTVGIGVVPPERALNLGMTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PM+RGSG+ WDLRK QPY++Y+ ++FDIP+GK GD YDRYLVR++EMR+SN+IIKQC+ W
Sbjct: 243 PMIRGSGIAWDLRKTQPYDVYDRMDFDIPVGKTGDCYDRYLVRVQEMRESNRIIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPVI++N+K+ +P R +MKSNME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRANPGPVITDNHKVAAPDRESMKSNMEELIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL +L EM GHMI+D V IIGT DIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLATLDEMARGHMIADAVAIIGTMDIVFGEIDR 417
>gi|254491826|ref|ZP_05105005.1| NADH dehydrogenase (quinone), D subunit [Methylophaga thiooxidans
DMS010]
gi|224463304|gb|EEF79574.1| NADH dehydrogenase (quinone), D subunit [Methylophaga thiooxydans
DMS010]
Length = 417
Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/415 (76%), Positives = 365/415 (87%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRLILE++GEV+ +ADPHIGLLHR TEKLAE + + QS+ Y
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLILEMDGEVIERADPHIGLLHRGTEKLAESKPFNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIEKL+ +++PIRAQYIRVMFDEITR+LNHLMW+G+H LDIG
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEKLIGLEVPIRAQYIRVMFDEITRVLNHLMWLGAHGLDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LY FREREDL+DCYEAVSGARMHA YYRPGGVYRDLP MPQY++S N K K
Sbjct: 123 AMTVFLYCFREREDLMDCYEAVSGARMHATYYRPGGVYRDLPARMPQYQTSKWHNEKEVK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
N NR+GSLLDFIEDFT RFPK +DEYETLLTDNRIWKQR VGIGVVSPERA+ +GFTG
Sbjct: 183 KKNSNREGSLLDFIEDFTTRFPKCVDEYETLLTDNRIWKQRTVGIGVVSPERAMQLGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG++WDLR+KQPYE+Y+ L+FDIPIGK GD YDRYLVR+EEMRQSN+IIKQC+ W
Sbjct: 243 PMLRGSGIEWDLRRKQPYEVYDKLDFDIPIGKEGDCYDRYLVRVEEMRQSNRIIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPVI +N+K+ P R MK +ME LIHHFKLFTEG+ VP GE+YS +EHPKGEFG
Sbjct: 303 LRANPGPVILDNSKVAPPKRAVMKDDMEALIHHFKLFTEGYCVPEGEVYSAIEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY+VSDGANKPYR+KIR+PGF HL +++EM GHM++DVV IIGT DIVFGEIDR
Sbjct: 363 IYMVSDGANKPYRVKIRAPGFPHLAAMNEMSKGHMLADVVAIIGTMDIVFGEIDR 417
>gi|121604333|ref|YP_981662.1| NADH dehydrogenase subunit D [Polaromonas naphthalenivorans CJ2]
gi|229891294|sp|A1VM63.1|NUOD_POLNA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|120593302|gb|ABM36741.1| NADH dehydrogenase subunit D [Polaromonas naphthalenivorans CJ2]
Length = 417
Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/415 (76%), Positives = 364/415 (87%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +TY+QSLPY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESKTYIQSLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAY +AIEKLL + +PIRAQYIRVMF EITRLLNHLMW+G+H LD G
Sbjct: 63 MDRLDYVSMMSNEHAYCLAIEKLLGVDVPIRAQYIRVMFSEITRLLNHLMWLGAHGLDCG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +L+Y FRERE L D YEAVSGARMHAAY+RPGGVYRDLPE M QYK + IRN KA
Sbjct: 123 AMNMLIYCFREREVLFDMYEAVSGARMHAAYFRPGGVYRDLPESMSQYKVNKIRNAKAID 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNENRQGSLLDFI+DF +FPK +DEYETLLTDNRIWKQR VG+GVVSPERAL++GFTG
Sbjct: 183 ALNENRQGSLLDFIDDFVTKFPKLVDEYETLLTDNRIWKQRTVGVGVVSPERALNLGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG WDLRK+QPYE+Y ++FDIP+GK GD YDRYLVR+ EMRQSN+IIKQC+ W
Sbjct: 243 PMLRGSGFAWDLRKQQPYEVYAQMDFDIPVGKTGDCYDRYLVRVAEMRQSNRIIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+K+ P R +MKSNME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRVNSGPVITSNHKVAPPNRESMKSNMEELIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY+VSDGANKPYR+KIR PGF+HL ++ EM GHMI+D V +IGT DIVFGEIDR
Sbjct: 363 IYIVSDGANKPYRLKIRPPGFSHLAAMDEMSRGHMIADAVAVIGTMDIVFGEIDR 417
>gi|438000148|ref|YP_007183881.1| NADH dehydrogenase subunit D [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451813080|ref|YP_007449533.1| NADH dehydrogenase I subunit D [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
gi|429339382|gb|AFZ83804.1| NADH dehydrogenase subunit D [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451779049|gb|AGF49929.1| NADH dehydrogenase I subunit D [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
Length = 418
Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/418 (77%), Positives = 375/418 (89%), Gaps = 2/418 (0%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
++IK+Y LNFGPQHPAAHGVLRLILEL+GEVV +ADPHIGLLHRATEKL E +TY+Q LP
Sbjct: 1 MDIKTYTLNFGPQHPAAHGVLRLILELDGEVVCRADPHIGLLHRATEKLIESKTYIQGLP 60
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
YMDRLDYVSMMCNEHAYVMAIEK+L+I +P+RA+YIRVMFDEITR+LNHLM +GSH+LD+
Sbjct: 61 YMDRLDYVSMMCNEHAYVMAIEKMLSIDVPLRAKYIRVMFDEITRILNHLMSLGSHALDV 120
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GAM V LYAFREREDL+DCYEAVSGARMHAAYYRPGGVYRDLP+ MP+Y+ S + +
Sbjct: 121 GAMAVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDNMPKYQKSSKKVRSSK 180
Query: 458 KI--LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMG 515
+N+NR+GSLLDFIEDFT RFP IDEYETLLTDNRIWKQRLVGIGVVSP+RA+ +G
Sbjct: 181 DFSNMNKNREGSLLDFIEDFTIRFPDCIDEYETLLTDNRIWKQRLVGIGVVSPDRAIELG 240
Query: 516 FTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQC 575
F+GPMLRGSGV+WD+RK QPYE+Y+ LNFD+PIG NGD YDRYLVRI EMR+SNKIIKQC
Sbjct: 241 FSGPMLRGSGVEWDIRKTQPYEVYSDLNFDVPIGINGDCYDRYLVRIAEMRESNKIIKQC 300
Query: 576 IKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
I+WLR N GPV+ + K + P R+++KS ME+LIHHFK FTEGF++P+GE YS VEHPKG
Sbjct: 301 IQWLRDNPGPVMIESCKFSPPKRVDIKSGMEELIHHFKFFTEGFHLPIGEAYSAVEHPKG 360
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFGIY++SDGANKPYR+KIR+PGFAHLQSL EM+SGHM++DVVTIIGTQDIVFGEIDR
Sbjct: 361 EFGIYILSDGANKPYRVKIRAPGFAHLQSLEEMVSGHMLADVVTIIGTQDIVFGEIDR 418
>gi|398803091|ref|ZP_10562201.1| NADH dehydrogenase I, D subunit [Polaromonas sp. CF318]
gi|398097299|gb|EJL87609.1| NADH dehydrogenase I, D subunit [Polaromonas sp. CF318]
Length = 417
Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/415 (75%), Positives = 367/415 (88%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +TY+QSLPY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESKTYIQSLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAY +AIEKLL + +P+RAQYIRVM+ EITRLLNHL+W+G+H D G
Sbjct: 63 MDRLDYVSMMSNEHAYCLAIEKLLGVDVPVRAQYIRVMYAEITRLLNHLLWLGAHGFDCG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +L+Y FRERE L D YEAVSGARMHAAY+RPGGVYRDLPE MPQY+ S ++N KA
Sbjct: 123 AMNILIYCFREREALFDMYEAVSGARMHAAYFRPGGVYRDLPESMPQYRVSKVKNAKAIA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNENRQGSLLDFIEDF+N+FP +DEYETLLTDNRIWKQR VG+GVVSPERAL++GFTG
Sbjct: 183 ALNENRQGSLLDFIEDFSNKFPGYVDEYETLLTDNRIWKQRTVGVGVVSPERALNLGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG WDLRK+QPY++Y+ ++FDIP+GK GD YDRYLVR+EEMRQSN+IIKQC+ W
Sbjct: 243 PMLRGSGFAWDLRKQQPYDVYDKMDFDIPVGKTGDCYDRYLVRVEEMRQSNRIIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+K+ +P R +MK+NME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRVNPGPVITSNHKVAAPDRESMKTNMEELIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY+VSDGANKPYR+KIR PGF HL ++ EM GHMI+D V +IGT DIVFGEIDR
Sbjct: 363 IYIVSDGANKPYRLKIRPPGFPHLAAMDEMSRGHMIADAVAVIGTMDIVFGEIDR 417
>gi|388569732|ref|ZP_10156119.1| nadh dehydrogenase subunit d [Hydrogenophaga sp. PBC]
gi|388263022|gb|EIK88625.1| nadh dehydrogenase subunit d [Hydrogenophaga sp. PBC]
Length = 417
Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/415 (75%), Positives = 366/415 (88%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEVV++ADPHIGLLHRATEKLAE +T++QSLPY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRATEKLAEHKTFIQSLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAY +AIEKLL I +PIRAQYIRVMF EITR+LNHLMW+GSH D G
Sbjct: 63 MDRLDYVSMMSNEHAYCLAIEKLLGIDVPIRAQYIRVMFSEITRMLNHLMWLGSHGNDCG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+ +L+YAFREREDL D YEAVSGARMHAAY+RPGGVYRDLP+ MPQY++S +RN +
Sbjct: 123 SSTILIYAFREREDLFDMYEAVSGARMHAAYFRPGGVYRDLPDTMPQYQASKVRNQRGVD 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN NRQGSLLDFI+DFT RFP +DEY TLLTDNRIWKQR VGIGVV ERAL++G TG
Sbjct: 183 ELNRNRQGSLLDFIDDFTKRFPTYLDEYHTLLTDNRIWKQRTVGIGVVPAERALNLGMTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPYE+Y+ ++FDIP+GK GD+YDRYLVR+EE++QSN+IIKQC+ W
Sbjct: 243 PMLRGSGIAWDLRKKQPYEVYDRMDFDIPVGKTGDTYDRYLVRMEELKQSNRIIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPVI++N+K+ PAR MK+NME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRANPGPVITDNHKVAPPAREAMKANMEELIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL +L EM GHM++D V IIGT DIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLATLDEMARGHMLADAVAIIGTMDIVFGEIDR 417
>gi|410694433|ref|YP_003625055.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
(NDH-1, chain D) [Thiomonas sp. 3As]
gi|294340858|emb|CAZ89253.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
(NDH-1, chain D) [Thiomonas sp. 3As]
Length = 417
Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/415 (76%), Positives = 366/415 (88%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK+Y LNFGPQHPAAHGVLRL+LEL+GEVV++ADPHIGLLHRATEKLAE +TY+Q+LPY
Sbjct: 3 DIKNYTLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRATEKLAEHKTYIQALPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAY +AIEKLL +++P+R QYIRVMF EITRLLNHLMW+G+H LD G
Sbjct: 63 MDRLDYVSMMCNEHAYCLAIEKLLGVEVPLRGQYIRVMFAEITRLLNHLMWLGAHGLDCG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL D YEAVSGARMHAAY+RPGGVYRDLP+ M QY S IRN +A +
Sbjct: 123 AMTVFLYAFREREDLFDMYEAVSGARMHAAYFRPGGVYRDLPDSMAQYGESKIRNARAVE 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
N RQGSLLDFI+DFT RFP +DEYETLLTDNRIWKQR VGIGVVSPERA+++G TG
Sbjct: 183 ARNAGRQGSLLDFIDDFTQRFPAYVDEYETLLTDNRIWKQRTVGIGVVSPERAMNLGMTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV WDLRK QPY++Y+ ++FDIP+GKNGD YDRYLVR+EEMRQSN+IIKQC+ W
Sbjct: 243 PMLRGSGVVWDLRKTQPYDVYDRMDFDIPVGKNGDCYDRYLVRMEEMRQSNRIIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPVI++N+K+ +PAR MK++ME LIHHFKLF+EG VP G+ Y+ VEHPKGEFG
Sbjct: 303 LRANPGPVITDNHKVAAPAREEMKTSMEALIHHFKLFSEGMRVPEGQAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL +L EM GHMI+DVV IIGT DIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLAALDEMSRGHMIADVVAIIGTLDIVFGEIDR 417
>gi|171058188|ref|YP_001790537.1| NADH dehydrogenase subunit D [Leptothrix cholodnii SP-6]
gi|218534413|sp|B1Y830.1|NUOD_LEPCP RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|170775633|gb|ACB33772.1| NADH dehydrogenase I, D subunit [Leptothrix cholodnii SP-6]
Length = 417
Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/415 (75%), Positives = 368/415 (88%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHR TEKLAE +T++QSLPY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAESKTFIQSLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAY +AIEKL+ I++P RAQYIRVMF EITRLLNHL+W+G H +D G
Sbjct: 63 MDRLDYVSMMCNEHAYCLAIEKLMGIQVPERAQYIRVMFSEITRLLNHLLWLGCHGMDCG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +L+Y FREREDL D YEAVSGARMHAAY+RPGGVYRDLP++MPQYK S IRN KA
Sbjct: 123 AMNMLIYCFREREDLFDMYEAVSGARMHAAYFRPGGVYRDLPDVMPQYKVSKIRNAKAMA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNENRQGSLLDFI+DFT RFP +DEYETLLTDNRIWKQR VGIGV++PERAL++G TG
Sbjct: 183 RLNENRQGSLLDFIDDFTKRFPTLVDEYETLLTDNRIWKQRTVGIGVLTPERALNLGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG+ WDLRK QPY++Y+ ++FDIP+G NGD+YDRYLVR+EEMRQSN+II+QC W
Sbjct: 243 AMIRGSGIAWDLRKTQPYDVYDRMDFDIPVGVNGDTYDRYLVRVEEMRQSNRIIEQCSAW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPVI++N+K+ P+R+ MK++ME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRANPGPVITDNHKVAPPSRVEMKTSMEELIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY +SDGANKPYR+KIR+PGFAHL +L EM GHMI+D V IIGT DIVFGEIDR
Sbjct: 363 IYAISDGANKPYRLKIRAPGFAHLAALDEMSRGHMIADAVAIIGTMDIVFGEIDR 417
>gi|224824820|ref|ZP_03697927.1| NADH dehydrogenase I, D subunit [Pseudogulbenkiania ferrooxidans
2002]
gi|347538442|ref|YP_004845866.1| NADH dehydrogenase (ubiquinone) subunit D [Pseudogulbenkiania sp.
NH8B]
gi|224603313|gb|EEG09489.1| NADH dehydrogenase I, D subunit [Pseudogulbenkiania ferrooxidans
2002]
gi|345641619|dbj|BAK75452.1| NADH dehydrogenase (ubiquinone), D subunit [Pseudogulbenkiania sp.
NH8B]
Length = 417
Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/415 (75%), Positives = 369/415 (88%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPH+GLLHR TEKLAE +T++QSLPY
Sbjct: 3 EIRNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHVGLLHRGTEKLAESKTFIQSLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAY +AIEKLL +++P RAQYIRVMF EITR+LNHL+WIG+H++DIG
Sbjct: 63 MDRLDYVSMMSNEHAYCLAIEKLLGVEVPERAQYIRVMFAEITRILNHLLWIGAHAIDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+DCYEAVSGARMHAAY+RPGGVYRDLP+ MPQY S I+N +
Sbjct: 123 AMTVFLYAFREREDLMDCYEAVSGARMHAAYFRPGGVYRDLPDSMPQYTVSKIKNARELA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE RQGS+LDFI+ FT RFP +DEYETLLTDNRIWKQR VGIGVVSPERA ++GF+G
Sbjct: 183 KLNEGRQGSMLDFIDAFTQRFPTYVDEYETLLTDNRIWKQRTVGIGVVSPERARNLGFSG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG++WDLRKKQPY++Y+ ++FDIP+G NGD YDRYLVRIEEMRQSN+I+KQC+ W
Sbjct: 243 PMLRGSGIEWDLRKKQPYDVYDRMDFDIPVGVNGDCYDRYLVRIEEMRQSNRIVKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L+ N GPVI++N K+ P+R MKSNME+LIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 303 LKKNPGPVITDNFKVAPPSREGMKSNMEELIHHFKLFTEGMHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PG+AHL +L EM GHMI+DVV IIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGYAHLAALDEMSRGHMIADVVAIIGTQDIVFGEIDR 417
>gi|296136703|ref|YP_003643945.1| NADH dehydrogenase I subunit D [Thiomonas intermedia K12]
gi|295796825|gb|ADG31615.1| NADH dehydrogenase I, D subunit [Thiomonas intermedia K12]
Length = 417
Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/415 (76%), Positives = 366/415 (88%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK+Y LNFGPQHPAAHGVLRL+LEL+GEVV++ADPHIGLLHRATEKLAE +TY+Q+LPY
Sbjct: 3 DIKNYTLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRATEKLAEHKTYIQALPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAY +AIEKLL +++P+R QYIRVMF EITRLLNHLMW+G+H LD G
Sbjct: 63 MDRLDYVSMMCNEHAYCLAIEKLLGVEVPLRGQYIRVMFAEITRLLNHLMWLGAHGLDCG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL D YEAVSGARMHAAY+RPGGVYRDLP+ M QY S IRN +A +
Sbjct: 123 AMTVFLYAFREREDLFDMYEAVSGARMHAAYFRPGGVYRDLPDRMAQYGESKIRNARAVE 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
N RQGSLLDFI+DFT RFP +DEYETLLTDNRIWKQR VGIGVVSPERA+++G TG
Sbjct: 183 ARNAGRQGSLLDFIDDFTQRFPAYVDEYETLLTDNRIWKQRTVGIGVVSPERAMNLGMTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV WDLRK QPY++Y+ ++FDIP+GKNGD YDRYLVR+EEMRQSN+IIKQC+ W
Sbjct: 243 PMLRGSGVVWDLRKTQPYDVYDRMDFDIPVGKNGDCYDRYLVRMEEMRQSNRIIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPVI++N+K+ +PAR MK++ME LIHHFKLF+EG VP G+ Y+ VEHPKGEFG
Sbjct: 303 LRANPGPVITDNHKVAAPAREEMKTSMEALIHHFKLFSEGMRVPEGQAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL +L EM GHMI+DVV IIGT DIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLAALDEMSRGHMIADVVAIIGTLDIVFGEIDR 417
>gi|427401573|ref|ZP_18892645.1| NADH-quinone oxidoreductase subunit D [Massilia timonae CCUG 45783]
gi|425719682|gb|EKU82614.1| NADH-quinone oxidoreductase subunit D [Massilia timonae CCUG 45783]
Length = 417
Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/415 (76%), Positives = 363/415 (87%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
E+K+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHR TEKLAE RTYLQS+PY
Sbjct: 3 ELKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAETRTYLQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEH YV+AIEKLL I+ PIRAQYIR MFDEITR+LNHLMW+G+H+LDIG
Sbjct: 63 MDRLDYVSMMCNEHGYVLAIEKLLGIEAPIRAQYIRTMFDEITRILNHLMWLGAHALDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AMG LY FR+REDL D YEAVSGARMHAAYYRPGGVYRDLP+ MPQ+K S IR+ KA
Sbjct: 123 AMGPFLYCFRDREDLFDVYEAVSGARMHAAYYRPGGVYRDLPDTMPQHKQSPIRSAKAIA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE+RQGS++DF++ FT RF +DEYETLLTDNRIWKQR VGIGVVSPE A +MGFTG
Sbjct: 183 ELNEHRQGSVIDFLDAFTKRFDGYVDEYETLLTDNRIWKQRTVGIGVVSPEDAKAMGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ WDLRK QPY Y+ + FDIP+G NGDSYDRYLVR+EE+RQSN+IIKQC+ W
Sbjct: 243 AMLRGSGIAWDLRKHQPYAAYDKVEFDIPVGTNGDSYDRYLVRVEELRQSNRIIKQCLAW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPV+ +NNKI P+R++MKSNME LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRANPGPVMIDNNKIAPPSRMDMKSNMESLIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY+VSDGANKPYR+KIR+P + HLQSL EM GHMI+D V IIGTQDIVFG IDR
Sbjct: 363 IYIVSDGANKPYRLKIRTPDYVHLQSLDEMARGHMIADAVAIIGTQDIVFGSIDR 417
>gi|171463529|ref|YP_001797642.1| NADH dehydrogenase subunit D [Polynucleobacter necessarius subsp.
necessarius STIR1]
gi|229891295|sp|B1XUK1.1|NUOD_POLNS RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|171193067|gb|ACB44028.1| NADH dehydrogenase I, D subunit [Polynucleobacter necessarius
subsp. necessarius STIR1]
Length = 417
Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/415 (75%), Positives = 367/415 (88%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLA+ RT++Q++PY
Sbjct: 3 QIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAKTRTWIQNIPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIEKLL + +P+RAQYIRVM+DE+TRLLNHL+WIG H LD+G
Sbjct: 63 MDRLDYVSMMSNEHAYVMAIEKLLQVDVPLRAQYIRVMYDELTRLLNHLLWIGCHGLDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFR+RED+ D YEAVSGARMHAAYYRPGGVYRDLP+ M QY S IR+ A K
Sbjct: 123 AMAVFLYAFRDREDIFDMYEAVSGARMHAAYYRPGGVYRDLPDQMAQYDKSKIRSASAVK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNENR G+LLDFIE F N F N+DEY LLTDNRIWKQRLV IG+V+P+RAL +GFTG
Sbjct: 183 RLNENRSGTLLDFIEQFANGFDANVDEYCNLLTDNRIWKQRLVNIGIVTPKRALQLGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG++WDLRKKQPYE+Y+ L+FDIP+G NGDSYDRYLVR+EEMRQSN IIKQC+ W
Sbjct: 243 PMLRGSGIEWDLRKKQPYEVYDRLDFDIPVGVNGDSYDRYLVRMEEMRQSNHIIKQCVAW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L++N GPV+S N+K++ P R++MK+NME+LIHHFKLFTEG +VP GE YS VEHPKGEFG
Sbjct: 303 LKANPGPVMSTNHKVSPPKRVDMKTNMEELIHHFKLFTEGIHVPDGEAYSAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYL+SDGANKPYR+KIR+PGF HL S+ EM GHM++D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLISDGANKPYRMKIRAPGFVHLSSMDEMSRGHMLADAVTIIGTQDIVFGEIDR 417
>gi|121609759|ref|YP_997566.1| NADH dehydrogenase subunit D [Verminephrobacter eiseniae EF01-2]
gi|229891304|sp|A1WLP1.1|NUOD_VEREI RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|121554399|gb|ABM58548.1| NADH dehydrogenase I, D subunit [Verminephrobacter eiseniae EF01-2]
Length = 417
Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/415 (74%), Positives = 366/415 (88%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEVV++ADPHIGLLHRATEKLAE +TY+QSLPY
Sbjct: 3 EIKNYCLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRATEKLAEHKTYIQSLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAY +A+EKLL + +P+RAQYIRV+F EITRLLNHLMW+GSH+ D G
Sbjct: 63 MDRLDYVSMMCNEHAYCLALEKLLGLPVPLRAQYIRVLFAEITRLLNHLMWLGSHANDCG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+ +L+Y FREREDL D YEAVSGARMHAAY+RPGGVYRDLP+ MP+Y++S IRN +A
Sbjct: 123 SSTMLMYTFREREDLFDMYEAVSGARMHAAYFRPGGVYRDLPDSMPRYQASKIRNARALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN+NRQGSLLDFI DF RFP +DEYETLLTDNRIWKQR VGIGVVSP+RAL++G TG
Sbjct: 183 ALNQNRQGSLLDFIADFAQRFPGCVDEYETLLTDNRIWKQRTVGIGVVSPQRALNLGMTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRK QPY++Y ++FD+P+GK GD YDRYLVR++EMR++N+II QC+ W
Sbjct: 243 PMLRGSGIAWDLRKTQPYDVYEHMDFDVPVGKTGDCYDRYLVRVQEMREANRIIGQCVAW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPVI++N+K+ +P R MKSNME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRANPGPVITDNHKVAAPGRAAMKSNMEELIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL +L EM GHMI+D V IIGT DIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLATLDEMARGHMIADAVAIIGTMDIVFGEIDR 417
>gi|91789113|ref|YP_550065.1| NADH dehydrogenase subunit D [Polaromonas sp. JS666]
gi|122967584|sp|Q127X5.1|NUOD_POLSJ RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|91698338|gb|ABE45167.1| NADH dehydrogenase subunit D [Polaromonas sp. JS666]
Length = 417
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/415 (75%), Positives = 365/415 (87%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +TY+QSLPY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESKTYIQSLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +AIEKLL + +PIRAQYIRVM+ EITRLLNHL+W+G+H D G
Sbjct: 63 MDRLDYVSMMSNEQAYCLAIEKLLGVDVPIRAQYIRVMYAEITRLLNHLLWLGAHGFDCG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +L+Y FRERE L D YEAVSGARMHAAY+RPGGVYRDLP+ MPQY+ S I+N KA
Sbjct: 123 AMNILIYCFREREALFDMYEAVSGARMHAAYFRPGGVYRDLPDTMPQYRVSKIKNAKAIA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNENRQGSLLDFI+DF +FP+ +DEYETLLTDNRIWKQR VG+GVVSPERAL++GFTG
Sbjct: 183 ALNENRQGSLLDFIDDFVAKFPRLVDEYETLLTDNRIWKQRTVGVGVVSPERALNLGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG WDLRK+QPY++Y+ ++FDIP+GK GD YDRYLVRIEEMRQSN+IIKQCI W
Sbjct: 243 PMLRGSGFAWDLRKQQPYDVYDRMDFDIPVGKTGDCYDRYLVRIEEMRQSNRIIKQCIDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+K+ +P R +MK+NME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRVNPGPVITSNHKVAAPDRESMKTNMEELIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY+VSDGANKPYR+KIR PGF HL ++ EM GHMI+D V +IGT DIVFGEIDR
Sbjct: 363 IYIVSDGANKPYRLKIRPPGFPHLAAMDEMSRGHMIADAVAVIGTMDIVFGEIDR 417
>gi|387128699|ref|YP_006297304.1| NADH-ubiquinone oxidoreductase subunit D [Methylophaga sp. JAM1]
gi|386275761|gb|AFI85659.1| NADH-ubiquinone oxidoreductase chain D [Methylophaga sp. JAM1]
Length = 417
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/415 (76%), Positives = 363/415 (87%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRLILE++GEV+ ADPHIGLLHR TEKLAE + Y QS+ Y
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLILEMDGEVIVHADPHIGLLHRGTEKLAESKPYNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIEKLL I+ P+RAQYIRV+FDE+TR+LNHLMW+G+H LDIG
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEKLLGIEPPVRAQYIRVLFDEMTRVLNHLMWLGAHGLDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LY FREREDL+DCYEAVSGAR+HA YYRPGGVYRDLP MPQY+ S + K
Sbjct: 123 AMTVFLYCFREREDLMDCYEAVSGARLHATYYRPGGVYRDLPNSMPQYQKSKWHSEAEVK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN+NR+GSLLDFIEDF RFPK +DEYETLLTDNRIWKQR VGIGVVSPERAL +GFTG
Sbjct: 183 KLNQNREGSLLDFIEDFCQRFPKCVDEYETLLTDNRIWKQRTVGIGVVSPERALQLGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV+WDLR+KQPYE+Y+ L+FDIP+GK GD YDRYLVR+EEMRQSNKI++QC+ W
Sbjct: 243 PMLRGSGVEWDLRRKQPYEVYDRLDFDIPVGKEGDCYDRYLVRVEEMRQSNKIMQQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPVI +N KI P+R +MK +ME LIHHFKLFTEG+ VP GE+YS VEHPKGEFG
Sbjct: 303 LRANPGPVILDNTKIAPPSRADMKDDMEALIHHFKLFTEGYCVPEGEVYSAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY+VSDGANKPYR+KIR+PGF HL S++EM GH+++DVV IIGT DIVFGEIDR
Sbjct: 363 IYMVSDGANKPYRVKIRAPGFPHLASMNEMAKGHLLADVVAIIGTMDIVFGEIDR 417
>gi|217970159|ref|YP_002355393.1| NADH dehydrogenase subunit D [Thauera sp. MZ1T]
gi|217507486|gb|ACK54497.1| NADH dehydrogenase I, D subunit [Thauera sp. MZ1T]
Length = 417
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/415 (74%), Positives = 370/415 (89%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHP+AHGVLRL+LEL+GEVV +ADPHIGLLHR TEKLAE RT++QS+PY
Sbjct: 3 EIRNYTINFGPQHPSAHGVLRLVLELDGEVVERADPHIGLLHRGTEKLAETRTWVQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAY MAIEKLL +++P+RAQYIRVMFDEITR+LNHL+ IG+H+LDIG
Sbjct: 63 MDRLDYVSMMCNEHAYCMAIEKLLGVEVPLRAQYIRVMFDEITRVLNHLLNIGTHALDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM ++LY FREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MP+Y+ + +N K +
Sbjct: 123 AMTMVLYTFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDRMPKYEVNKFKNEKTVR 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN NR+GS+LDF+EDFTNRFP DEYETLLTDNRIWKQR VGIGVVSPE+AL+ GFTG
Sbjct: 183 ELNANREGSMLDFLEDFTNRFPTYCDEYETLLTDNRIWKQRTVGIGVVSPEQALAWGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPYE+Y+ ++FD+PIGKNGD YDRYL R+EEMRQSN+IIKQCI W
Sbjct: 243 PMLRGSGIAWDLRKKQPYEVYDRVDFDVPIGKNGDCYDRYLCRMEEMRQSNRIIKQCIDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+K+ P+R MK+NME+LIHHFKLFTEG +VP GE+Y+ VEHPKGEFG
Sbjct: 303 LRKNSGPVITDNHKVAPPSREAMKTNMEELIHHFKLFTEGMHVPKGEVYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y VSDGANKPYR+K+R+PGFAHL ++ ++ GHMI+DVV IIGT D+VFGEIDR
Sbjct: 363 VYAVSDGANKPYRLKLRAPGFAHLAAMDDIARGHMIADVVAIIGTMDVVFGEIDR 417
>gi|350563171|ref|ZP_08931993.1| NADH dehydrogenase I, D subunit [Thioalkalimicrobium aerophilum
AL3]
gi|349779035|gb|EGZ33382.1| NADH dehydrogenase I, D subunit [Thioalkalimicrobium aerophilum
AL3]
Length = 417
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/415 (75%), Positives = 362/415 (87%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHP+AHGVLRL+LEL+GE + ++DPHIGLLHR TEKLAE + Y QS+ Y
Sbjct: 3 EIKNYTLNFGPQHPSAHGVLRLVLELDGETIVRSDPHIGLLHRGTEKLAEYKPYNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIEKLL +++P RAQYIRVMFDEITR+LNHLMW+G+H+LDIG
Sbjct: 63 MDRLDYVSMMANEHGYVLAIEKLLGVEVPERAQYIRVMFDEITRILNHLMWLGAHALDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+DCYEAVSGARMHA YYRPGGVYRDLPE M +Y S K
Sbjct: 123 AMTVFLYAFREREDLMDCYEAVSGARMHATYYRPGGVYRDLPETMAKYSESPWHKGKDLA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE R+GSLLDFIE FT RFP +DEYETLLTDNRIWKQR V IG+VSPERAL +GF+G
Sbjct: 183 KLNETREGSLLDFIEAFTERFPGYVDEYETLLTDNRIWKQRTVDIGIVSPERALQLGFSG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPYE+Y+ L+FDIP+GK GDSYDRYLVR+ EMR+SNKIIKQC++W
Sbjct: 243 PMLRGSGIAWDLRKKQPYEVYDRLDFDIPVGKTGDSYDRYLVRVAEMRESNKIIKQCVQW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L++N GPVI++N+K+T P+R++ KSNME LIHHFKLFTEGF P GE+YS VEHPKGEFG
Sbjct: 303 LKANPGPVIADNHKVTPPSRVDAKSNMEALIHHFKLFTEGFITPPGEVYSAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDGANKPYR+KIR+PGF HL +L EM GHMI+DVVTIIGTQDIVFGEIDR
Sbjct: 363 VYLVSDGANKPYRLKIRAPGFPHLAALDEMAKGHMIADVVTIIGTQDIVFGEIDR 417
>gi|358638065|dbj|BAL25362.1| NADH dehydrogenase subunit D [Azoarcus sp. KH32C]
Length = 417
Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/415 (75%), Positives = 369/415 (88%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHP+AHGVLRL+LEL+GEVV +ADPHIGLLHR TEKLAE RT++QS+PY
Sbjct: 3 EIRNYTINFGPQHPSAHGVLRLVLELDGEVVERADPHIGLLHRGTEKLAETRTWIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAY MAIEKLL +++PIRAQYIRVMFDEITR+LNHL+ IG+H+LDIG
Sbjct: 63 MDRLDYVSMMCNEHAYCMAIEKLLGLEVPIRAQYIRVMFDEITRILNHLLGIGTHALDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM ++LY FREREDLLD YEAVSGAR+HAAYYRPGGVYRDLP+ MPQY+ + +N K +
Sbjct: 123 AMTMVLYTFREREDLLDVYEAVSGARLHAAYYRPGGVYRDLPDRMPQYQVNKFKNAKTVQ 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE+RQGS+LDF+EDFTNRF DEYETLLTDNRIWKQR VGIGVVSPE+A ++GFTG
Sbjct: 183 ELNESRQGSMLDFLEDFTNRFDGYCDEYETLLTDNRIWKQRTVGIGVVSPEQAKALGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WDLR+KQPYE+Y+ ++FD+P+GKNGD YDRYL R+EEMRQSN+IIKQCI W
Sbjct: 243 VMLRGSGVAWDLRRKQPYEVYDQVDFDVPLGKNGDCYDRYLCRMEEMRQSNRIIKQCIAW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPVI++N+K+ P R MK+NME+LIHHFKLFTEG +VP GE+YS VEHPKGEFG
Sbjct: 303 LRANPGPVIADNHKVAPPPRERMKANMEELIHHFKLFTEGMHVPKGEVYSAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y VSDGANKPYR+K+R+PGFAHL ++ EM GHMI+DVV IIGT DIVFGEIDR
Sbjct: 363 VYAVSDGANKPYRLKLRAPGFAHLAAMDEMARGHMIADVVAIIGTMDIVFGEIDR 417
>gi|121593380|ref|YP_985276.1| NADH dehydrogenase subunit D [Acidovorax sp. JS42]
gi|222110089|ref|YP_002552353.1| NADH dehydrogenase subunit d [Acidovorax ebreus TPSY]
gi|218534380|sp|A1W4M5.1|NUOD_ACISJ RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|120605460|gb|ABM41200.1| NADH dehydrogenase subunit D [Acidovorax sp. JS42]
gi|221729533|gb|ACM32353.1| NADH dehydrogenase I, D subunit [Acidovorax ebreus TPSY]
Length = 417
Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/415 (75%), Positives = 364/415 (87%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEVV++ADPHIGLLHRATEKLAE +TY+QSLPY
Sbjct: 3 EIKNYSLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRATEKLAEHKTYIQSLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNE AY +AIEK+L I++P+RA+YIR MF EITRLLNHLMW+GSH D G
Sbjct: 63 MDRLDYVSMMCNEQAYCLAIEKMLGIEVPLRAKYIRTMFGEITRLLNHLMWLGSHGNDCG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+ +L+Y FREREDL D YEAVSGARMHAAY+RPGGVYRDLP+ M QYK S I+N KA +
Sbjct: 123 SSTILIYTFREREDLFDMYEAVSGARMHAAYFRPGGVYRDLPDSMAQYKVSKIKNAKAIE 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN NRQGSLLDFI+DFT RFPK +DEYETLLTDNRIWKQR VGIGVV ERAL++G TG
Sbjct: 183 ELNRNRQGSLLDFIDDFTQRFPKCVDEYETLLTDNRIWKQRTVGIGVVPAERALNLGMTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPY+ Y+ ++FD+P+G GDSYDRYLVR++EMR+SN+IIKQC+ W
Sbjct: 243 PMLRGSGIAWDLRKKQPYDAYDRVDFDVPVGVTGDSYDRYLVRVQEMRESNRIIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPVI++N+KI P+R MKSNME+LIHHFKLFTEGF VP GE Y+ VEHPKGEFG
Sbjct: 303 LRANPGPVITDNHKIAPPSREAMKSNMEELIHHFKLFTEGFRVPAGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY+VSDGANKPYR+KIR+PGFAHL +L EM GHM++D V IIGT DIVFGEIDR
Sbjct: 363 IYMVSDGANKPYRLKIRAPGFAHLATLDEMARGHMLADAVAIIGTMDIVFGEIDR 417
>gi|394989150|ref|ZP_10381984.1| NADH dehydrogenase I, D subunit [Sulfuricella denitrificans skB26]
gi|393791569|dbj|GAB71623.1| NADH dehydrogenase I, D subunit [Sulfuricella denitrificans skB26]
Length = 419
Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/417 (73%), Positives = 371/417 (88%), Gaps = 2/417 (0%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I++Y LNFGPQHPAAHGVLR++LEL+GEVV++ADPHIGLLHRATEKLAE +T+LQ++PY
Sbjct: 3 DIRNYTLNFGPQHPAAHGVLRMVLELDGEVVKRADPHIGLLHRATEKLAEHKTFLQAMPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYV+A EKLL I++PIRAQYIRVMFDEITR+LNHL+W+G+H LDIG
Sbjct: 63 MDRLDYVSMMCNEHAYVLATEKLLGIEVPIRAQYIRVMFDEITRILNHLLWLGAHGLDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIR--NNKA 456
AM + LY FREREDL+D YEA SGAR+HAAYYRPGGVYRDLP+ MP Y+++ ++ N K
Sbjct: 123 AMTIFLYTFREREDLMDVYEAASGARLHAAYYRPGGVYRDLPDSMPLYETAKMKVHNAKQ 182
Query: 457 TKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGF 516
+++N NR GS+LDFIEDFTNRFP +DEYETLLTDNRIWKQR VGIGV++PERAL++G
Sbjct: 183 VEVMNANRHGSMLDFIEDFTNRFPGCVDEYETLLTDNRIWKQRTVGIGVITPERALALGL 242
Query: 517 TGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCI 576
TGPMLRGSG+ WDLRKKQPYE+Y+ ++FDIP+G NGD YDRYLVR+EEMRQSN+IIKQC+
Sbjct: 243 TGPMLRGSGLAWDLRKKQPYEVYDKVDFDIPVGVNGDCYDRYLVRMEEMRQSNRIIKQCV 302
Query: 577 KWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
WLR N GPVI++N+K+ P+R MK NME+LIHHFKLFTEG +VP GE Y+ VEHPKGE
Sbjct: 303 DWLRVNPGPVITDNHKVAPPSREGMKQNMEELIHHFKLFTEGMHVPEGECYAAVEHPKGE 362
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FGIY+VSDGANKPYR+KIR+PGF+H+ ++ EM GHMI+DVV ++GT DIVFGEIDR
Sbjct: 363 FGIYMVSDGANKPYRLKIRAPGFSHMSAMDEMARGHMIADVVALMGTFDIVFGEIDR 419
>gi|332528754|ref|ZP_08404731.1| NADH dehydrogenase subunit D [Hylemonella gracilis ATCC 19624]
gi|332041820|gb|EGI78169.1| NADH dehydrogenase subunit D [Hylemonella gracilis ATCC 19624]
Length = 417
Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/415 (74%), Positives = 366/415 (88%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEVV++ADPHIGLLHRATEKLAE +TY+QSLPY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRATEKLAESKTYIQSLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNE AY +AIEK+L I++P+RA+YIR MF EITRLLNHLMW+GSH D G
Sbjct: 63 MDRLDYVSMMCNEQAYCLAIEKMLGIEVPLRAKYIRTMFGEITRLLNHLMWLGSHGNDCG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+ +L+Y FREREDL D YEAVSGARMHAAY+RPGGVYRDLP+ MPQ+++S +R+N++
Sbjct: 123 SSTILIYTFREREDLFDMYEAVSGARMHAAYFRPGGVYRDLPDSMPQHQASKVRSNRSLA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN RQGSLLDFI+DFT RFPK +DEYETLLTDNRIWKQR VGIGVV+PERAL++G TG
Sbjct: 183 DLNAKRQGSLLDFIDDFTQRFPKCVDEYETLLTDNRIWKQRTVGIGVVTPERALNLGMTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRG G+ WDLRK+QPY+ Y+ ++FDIP+GK GDSYDRYLVR+ EMR+SNKIIKQC+ W
Sbjct: 243 PMLRGCGIAWDLRKQQPYDAYDRVDFDIPVGKTGDSYDRYLVRVAEMRESNKIIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPVI++N+K+ P+R MKSNME+LIHHFKLFTEGF VP GE Y+ VEHPKGEFG
Sbjct: 303 LRANPGPVITDNHKVAPPSREAMKSNMEELIHHFKLFTEGFRVPAGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL +L E+ GHM++D V IIGT DIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLATLDELARGHMLADAVAIIGTLDIVFGEIDR 417
>gi|257095316|ref|YP_003168957.1| NADH dehydrogenase subunit D [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
gi|257047840|gb|ACV37028.1| NADH dehydrogenase I, D subunit [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 417
Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/415 (74%), Positives = 372/415 (89%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
E++++ LNFGPQHPAAHGVLR++LEL+GEVV +ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 ELRNFTLNFGPQHPAAHGVLRMVLELDGEVVMRADPHIGLLHRATEKLAETKTWIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDY+SMMCNEHAY MAIE+LL I++PIRAQYIRVMFDEITR+LNHL+W+G H LD+G
Sbjct: 63 MDRLDYMSMMCNEHAYCMAIERLLQIEVPIRAQYIRVMFDEITRILNHLLWVGCHGLDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM ++LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ M QYK S ++ K
Sbjct: 123 AMTMVLYAFREREDLVDAYEAVSGARMHAAYYRPGGVYRDLPDRMAQYKESKWKSAAQIK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
NE R GSLLDF++DF++RFPK +DEYETLLTDNRIWKQRLV +G+V+PERAL GFTG
Sbjct: 183 PFNEARGGSLLDFLDDFSSRFPKLLDEYETLLTDNRIWKQRLVDVGIVTPERALQRGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPYE+Y+ ++FDIP+GK GDSYDRYLVR+EEMRQSN+I+KQCI W
Sbjct: 243 PMLRGSGIAWDLRKKQPYEVYDRVDFDIPVGKTGDSYDRYLVRMEEMRQSNRILKQCIDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+S+N+K+ +P+R MKSNME+LIHHFKL TEG +VP GE+YS VEHPKGEFG
Sbjct: 303 LRQNPGPVMSDNHKVAAPSREAMKSNMEELIHHFKLCTEGMHVPEGEVYSAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY++SDGANKPYR+KIR PG+ HL +++EM+ GHM++DVVTIIG+QD+VFGEIDR
Sbjct: 363 IYVISDGANKPYRLKIRPPGYVHLSAMNEMVCGHMLADVVTIIGSQDVVFGEIDR 417
>gi|347818888|ref|ZP_08872322.1| NADH dehydrogenase subunit D [Verminephrobacter aporrectodeae
subsp. tuberculatae At4]
Length = 417
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/415 (74%), Positives = 365/415 (87%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEVV++ADPHIGLLHRATEKLAE +TY+QSLPY
Sbjct: 3 EIKNYSLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRATEKLAEHKTYIQSLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAY +AIEKLL +++P+RAQYIRV+F EITRL+NHLMW+GSH D G
Sbjct: 63 MDRLDYVSMMCNEHAYCLAIEKLLGLEVPLRAQYIRVLFSEITRLMNHLMWLGSHGNDCG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+ +L+Y FREREDL D YEAVSGARMHAAY+RPGGVYRDLPE MPQY++ IRN +A
Sbjct: 123 SSTILIYTFREREDLFDIYEAVSGARMHAAYFRPGGVYRDLPESMPQYQAGQIRNARAIA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN NRQGSLLDFI DF+ RFP +DEYETLLTDNRIWKQR VGIGVVSPERAL++G TG
Sbjct: 183 ALNRNRQGSLLDFIADFSQRFPGCVDEYETLLTDNRIWKQRTVGIGVVSPERALNLGMTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV WDLRK QPYE+Y ++FD+P+G+ GD YDRYLVR++EMR++N+II QC+ W
Sbjct: 243 PMLRGSGVAWDLRKTQPYEVYEHMDFDVPVGRTGDCYDRYLVRVQEMREANRIIAQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR++ GPVI++N+K+ +P R +MK+ ME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRAHPGPVITDNHKVAAPGRESMKARMEELIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYL+SDGANKPYR+KIR+PGFAHL +L E+ GHM++D V IIGT DIVFGEIDR
Sbjct: 363 IYLLSDGANKPYRLKIRAPGFAHLATLDELARGHMLADAVAIIGTMDIVFGEIDR 417
>gi|334143735|ref|YP_004536891.1| NAD(P)H-quinone oxidoreductase subunit H [Thioalkalimicrobium
cyclicum ALM1]
gi|333964646|gb|AEG31412.1| NAD(P)H-quinone oxidoreductase subunit H [Thioalkalimicrobium
cyclicum ALM1]
Length = 417
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/415 (75%), Positives = 361/415 (86%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHP+AHGVLRL+LEL+GE + ++DPHIGLLHR TEKLAE + Y QS+ Y
Sbjct: 3 EIKNYTLNFGPQHPSAHGVLRLVLELDGETIVRSDPHIGLLHRGTEKLAEYKPYNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIEKLL +K+P RAQYIRVMFDEITR+LNHLMW+G+H+LDIG
Sbjct: 63 MDRLDYVSMMVNEHGYVLAIEKLLGVKVPERAQYIRVMFDEITRILNHLMWLGAHALDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+DCYEAVSG RMHA YYRPGGVYRDLP+ M +Y S K
Sbjct: 123 AMTVFLYAFREREDLMDCYEAVSGTRMHATYYRPGGVYRDLPDTMSKYSESPWHKGKDLN 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE R+GSLLDFIE FT RFP +DEYETLLTDNRIWKQR V IG+VSPERAL +GF+G
Sbjct: 183 KLNETREGSLLDFIEAFTERFPGYVDEYETLLTDNRIWKQRTVDIGIVSPERALQLGFSG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPYE+Y+ L+FDIP+GK GDSYDRYLVR+ EMR+SNKIIKQC++W
Sbjct: 243 PMLRGSGIAWDLRKKQPYEVYDRLDFDIPVGKTGDSYDRYLVRVAEMRESNKIIKQCVQW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L++N GPVI++N+K+T P+R++ KSNME LIHHFKLFTEGF P GE+YS VEHPKGEFG
Sbjct: 303 LKANPGPVIADNHKVTPPSRVDAKSNMEALIHHFKLFTEGFITPPGEVYSAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDGANKPYR+KIR+PGF HL +L EM GHMI+DVVTIIGTQDIVFGEIDR
Sbjct: 363 VYLVSDGANKPYRLKIRAPGFPHLAALDEMAKGHMIADVVTIIGTQDIVFGEIDR 417
>gi|335044178|ref|ZP_08537203.1| NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Methylophaga
aminisulfidivorans MP]
gi|333787424|gb|EGL53308.1| NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Methylophaga
aminisulfidivorans MP]
Length = 417
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/415 (74%), Positives = 363/415 (87%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK++ LNFGPQHPAAHGVLRLILE++GEV+ +ADPH+GLLHR TEKLAE + + QS+ Y
Sbjct: 3 EIKNFTLNFGPQHPAAHGVLRLILEMDGEVIVRADPHVGLLHRGTEKLAESKPFNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIEKL+ I +P+RAQYIRVMFDEITR+LNHLMW+G+H LDIG
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEKLIGIDVPVRAQYIRVMFDEITRVLNHLMWLGAHGLDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LY FREREDL+DCYEAVSGARMHA YYRPGGVYRDLP+ MPQY++S N K K
Sbjct: 123 AMTVFLYCFREREDLMDCYEAVSGARMHATYYRPGGVYRDLPDKMPQYQTSKWHNEKEIK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
N+NR+GSLLDFIEDFT RFP +DEYETLLTDNRIWKQR VGIGVVSPERAL +GF+G
Sbjct: 183 KKNQNREGSLLDFIEDFTQRFPHCVDEYETLLTDNRIWKQRTVGIGVVSPERALQLGFSG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG++WDLR+KQPYE+Y+ L+FDIPIGK GD YDRYLVR+ EMR+SN+IIKQC+ W
Sbjct: 243 PMLRGSGIEWDLRRKQPYEVYDQLDFDIPIGKEGDCYDRYLVRVAEMRESNRIIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPVI ++ K+ P R MK++ME LIHHFKLFTEG+ VP GE+Y+ +EHPKGEFG
Sbjct: 303 LRANPGPVIVDDTKVAPPKRSTMKNDMEALIHHFKLFTEGYCVPEGEVYTAIEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY++SDGANKPYR+KIR+PGF HL ++ EM GHM++DVV IIGT DIVFGEIDR
Sbjct: 363 IYMISDGANKPYRVKIRAPGFPHLAAMDEMAKGHMLADVVAIIGTMDIVFGEIDR 417
>gi|260223139|emb|CBA33403.1| NADH-quinone oxidoreductase subunit D [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 417
Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/415 (74%), Positives = 364/415 (87%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +TY+QSLPY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESKTYIQSLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAY +AIEKLL I++PIRAQYIRVM+ EITRLLNHLMW+GSH D G
Sbjct: 63 MDRLDYVSMMCNEHAYCLAIEKLLGIEVPIRAQYIRVMYSEITRLLNHLMWLGSHGNDCG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+ +L+Y FREREDL D YEA SGARMHAAY+RPGGVYRDLP+ MPQ+K+S +RN K +
Sbjct: 123 SSTILIYTFREREDLFDMYEAASGARMHAAYFRPGGVYRDLPDTMPQFKASKVRNAKGVE 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN NRQGSLLDFI+DF RFP +DEY TLLT+NRIWKQR V IG+VSPERAL+MGF+G
Sbjct: 183 ELNRNRQGSLLDFIDDFAQRFPACLDEYHTLLTENRIWKQRTVNIGIVSPERALNMGFSG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPY+ Y+ + FDIP+GK GD YDRYLVR+EEM+QSN+IIKQC+ W
Sbjct: 243 PMLRGSGIAWDLRKKQPYDAYDKVEFDIPVGKTGDVYDRYLVRMEEMKQSNRIIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L++N GPVI++N+K+ P+R MK++ME+LIHHFKLFTEGF VP GE Y+ VEHPKGEFG
Sbjct: 303 LKANPGPVITDNHKVAPPSREAMKTSMEELIHHFKLFTEGFRVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY+VSDGANKPYR+KIR PGF HL +L+EM GHMI+D V+IIGT DIVFGEIDR
Sbjct: 363 IYIVSDGANKPYRLKIRPPGFVHLAALNEMAKGHMIADAVSIIGTMDIVFGEIDR 417
>gi|237748888|ref|ZP_04579368.1| NADH-ubiquinone oxidoreductase D subunit [Oxalobacter formigenes
OXCC13]
gi|229380250|gb|EEO30341.1| NADH-ubiquinone oxidoreductase D subunit [Oxalobacter formigenes
OXCC13]
Length = 417
Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/415 (72%), Positives = 370/415 (89%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHP+AHGVLRLILEL+GE + +ADPHIG+LHRATEKLAEQRTYLQ+LPY
Sbjct: 3 EIRNYTINFGPQHPSAHGVLRLILELDGETIVRADPHIGMLHRATEKLAEQRTYLQALPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMC+EHAYVMAIEK+L + +PIRAQYIRVMFDEITRLL+HL+W+GS +LD+G
Sbjct: 63 MDRLDYVSMMCSEHAYVMAIEKMLELDVPIRAQYIRVMFDEITRLLSHLLWLGSQALDMG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V+LYAFREREDL+DCYEA SGARMHAAYYRPGGV +DLP+ MP++K + +++K K
Sbjct: 123 AMAVILYAFREREDLMDCYEAASGARMHAAYYRPGGVSQDLPDSMPKFKKTKFQSDKRIK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN NR+GSLLDFIEDFTNRFPK +DEYETLLTDNRIWKQRLVG+GV+SPE AL+ GFTG
Sbjct: 183 TLNANREGSLLDFIEDFTNRFPKCVDEYETLLTDNRIWKQRLVGVGVISPEDALAAGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV+WDLRKKQPY +Y+ ++F IP+GK GD YDRYLVR+EEMRQSN+II+QC+ W
Sbjct: 243 PMLRGSGVEWDLRKKQPYAVYDKMDFAIPVGKEGDCYDRYLVRVEEMRQSNRIIRQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L+ N GP+ S++ ++++P R MK+ ME++IHHFKLFTEGF++P GEIYS VE PKGEFG
Sbjct: 303 LKQNPGPIKSDDYRVSTPPRAKMKTGMEEMIHHFKLFTEGFHLPKGEIYSAVEAPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY+VSDGANKP+R+KIR+P F HLQ L +++ GH+I+D V +IG+ DIVFGE+DR
Sbjct: 363 IYMVSDGANKPFRMKIRAPSFVHLQGLEQLVKGHLIADAVAVIGSIDIVFGEVDR 417
>gi|332526750|ref|ZP_08402852.1| NADH dehydrogenase subunit D [Rubrivivax benzoatilyticus JA2]
gi|332111153|gb|EGJ11185.1| NADH dehydrogenase subunit D [Rubrivivax benzoatilyticus JA2]
Length = 417
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/415 (73%), Positives = 367/415 (88%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +TYLQ+LPY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAETKTYLQNLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +A+EKLL I++P+RA+YIR M+ E+TRLLNHL+W+G+H++D G
Sbjct: 63 MDRLDYVSMMVNEQAYCLAVEKLLGIEVPLRAKYIRTMYAELTRLLNHLLWLGTHAMDCG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFRERED+ D YEAVSGARMHAAY+RPGGVYRDLP+ MPQY S IRN +A K
Sbjct: 123 AMNVFLYAFREREDIFDMYEAVSGARMHAAYFRPGGVYRDLPDAMPQYTFSKIRNERALK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN NRQGSLLDFIEDF RFP +D+YETLLTDNRIWKQR VGIGVV+PERAL++GF+G
Sbjct: 183 ELNANRQGSLLDFIEDFVKRFPSRVDDYETLLTDNRIWKQRTVGIGVVTPERALNLGFSG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRK+QPY+ Y+ ++FDIP+G GD+YDRYLVR+EEMRQSN+I++QC+ W
Sbjct: 243 PMLRGSGIAWDLRKQQPYDAYDRVDFDIPVGVKGDTYDRYLVRMEEMRQSNRIVQQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPVI++N+K+ PAR++MK+NME+LIHHFKLF+EG +VP GE Y+ VEHPKGEFG
Sbjct: 303 LRANPGPVITDNHKVAPPARVDMKANMEELIHHFKLFSEGMHVPEGEAYATVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYL+SDGANKPYR+KIR PGF HL +L E+ GHM++D V IIGT DIVFGE+DR
Sbjct: 363 IYLISDGANKPYRMKIRPPGFVHLAALDELARGHMLADAVAIIGTMDIVFGEVDR 417
>gi|71906591|ref|YP_284178.1| NADH dehydrogenase subunit D [Dechloromonas aromatica RCB]
gi|123627977|sp|Q47HH3.1|NUOD_DECAR RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|71846212|gb|AAZ45708.1| NADH dehydrogenase subunit D [Dechloromonas aromatica RCB]
Length = 417
Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/415 (75%), Positives = 358/415 (86%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ LNFGPQHPAAHGVLRL+LEL+GEVV++ADPHIGLLHRATEKLAE RT++QS+PY
Sbjct: 3 DIRNFTLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRATEKLAETRTWVQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAY +A EKLL I++P R +YIRVMFDE+TR+LNHL+WIG H+LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYCLATEKLLGIEVPERGKYIRVMFDEVTRILNHLLWIGCHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM + LY FREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQY+ S N K
Sbjct: 123 AMTMALYTFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDRMPQYQESTWTNAKKAA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
NENR GS+LDF+EDFTNRFP EY TLLTDNRIWKQRLV +GVV+PERAL MGFTG
Sbjct: 183 EKNENRSGSVLDFLEDFTNRFPTYHSEYHTLLTDNRIWKQRLVNVGVVTPERALQMGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ WDLRKKQPY Y+ +NFD+P+G NGDSYDRYLVR+EEM QSN IIKQCI W
Sbjct: 243 AMLRGSGIAWDLRKKQPYAAYDKINFDVPVGVNGDSYDRYLVRMEEMIQSNNIIKQCIAW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++NNK+ P R NMK+NME+LIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVITDNNKVAPPPRENMKTNMEELIHHFKLFTEGIHVPAGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY VSDGANKPYR+KIR+PGF HL L EM GHMI+DVVTIIG+QDIVFGEIDR
Sbjct: 363 IYFVSDGANKPYRMKIRAPGFVHLAGLDEMSRGHMIADVVTIIGSQDIVFGEIDR 417
>gi|114321116|ref|YP_742799.1| NADH dehydrogenase subunit D [Alkalilimnicola ehrlichii MLHE-1]
gi|122311305|sp|Q0A778.1|NUOD_ALHEH RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|114227510|gb|ABI57309.1| NADH dehydrogenase subunit D [Alkalilimnicola ehrlichii MLHE-1]
Length = 417
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/415 (73%), Positives = 361/415 (86%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
E KSY +NFGPQHPAAHGVLR++LE+EGE VR+ADPHIGLLHRATEKLAE + Y QS+ Y
Sbjct: 3 EFKSYTVNFGPQHPAAHGVLRMVLEMEGETVRRADPHIGLLHRATEKLAESKPYNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSM+CNEHAYVMAIEKLL I+ PIRAQYIRVMFDEITR+LNHLMW+G+H LD+G
Sbjct: 63 MDRLDYVSMLCNEHAYVMAIEKLLGIEAPIRAQYIRVMFDEITRILNHLMWLGAHGLDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM LY FREREDL+DCYEAVSGARMHAAYYRPGGVYRDLPE MP+Y+ S R+ K +
Sbjct: 123 AMTAFLYCFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPESMPKYEPSKFRSKKELE 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
++N RQG++LDFIEDFT RFP +DEYETLLT+NRIW+QRLV +GVVSPERAL +GF+G
Sbjct: 183 LMNAARQGTMLDFIEDFTERFPGCVDEYETLLTENRIWRQRLVDVGVVSPERALQLGFSG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG++WDLRKKQPY++Y+ + FDIP+G NGD YDRYLVRIEEMRQSN+IIKQC+ W
Sbjct: 243 PMLRGSGIEWDLRKKQPYDVYDRVEFDIPVGTNGDCYDRYLVRIEEMRQSNRIIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+ ++K+ P+R MK +ME LIHHFKLFTEG+ P GE+Y+ VE PKGEFG
Sbjct: 303 LRHNPGPVMLEDHKVAPPSREEMKDDMESLIHHFKLFTEGYTTPPGEVYAAVEAPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
Y++SDGANKPYR+K+R+PGFAHL ++ EM GHM++DVV IIGTQDIVFGEIDR
Sbjct: 363 CYMISDGANKPYRVKLRAPGFAHLSAMDEMARGHMLADVVAIIGTQDIVFGEIDR 417
>gi|220934165|ref|YP_002513064.1| NADH dehydrogenase subunit D [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|219995475|gb|ACL72077.1| NADH dehydrogenase I, D subunit [Thioalkalivibrio sulfidophilus
HL-EbGr7]
Length = 417
Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/415 (74%), Positives = 363/415 (87%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y LNFGPQHP+AHGVLRL+LEL+GEVV++ADPHIGLLHR TEKLAE + Y QS+ Y
Sbjct: 3 EIRNYTLNFGPQHPSAHGVLRLVLELDGEVVQRADPHIGLLHRGTEKLAESKPYNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEH YV+A+EKLL ++ PIRAQYIRVMFDEITR+LNHL+W+G+H+LDIG
Sbjct: 63 MDRLDYVSMMCNEHGYVLAMEKLLGVQAPIRAQYIRVMFDEITRILNHLLWLGAHALDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+DCYEAVSGAR+HA YYRPGGV RDLP MPQY++S ++ K
Sbjct: 123 AMTVFLYAFREREDLMDCYEAVSGARLHATYYRPGGVARDLPGSMPQYQASRFKSQKEVD 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN+ RQGS+LDFIE FT RFP +DEYETLLTDNRIWKQR VG+GVVSPERA+ MGFTG
Sbjct: 183 ALNQVRQGSMLDFIEAFTERFPGCVDEYETLLTDNRIWKQRTVGVGVVSPERAMQMGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG++WDLR+KQPYE+Y+ L+F IP+G NGD YDRYLVRIEEMRQSN+II+QC+ W
Sbjct: 243 PMLRGSGIEWDLRRKQPYEVYDRLDFQIPVGVNGDCYDRYLVRIEEMRQSNRIIRQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+ ++KI P R MK++ME LIHHFKLFTEGF +P GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVMLEDHKIAPPRREEMKADMESLIHHFKLFTEGFCLPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDGANKPYR+K+R+PGFAHL L+EM +GHM++DVV IIGTQDIVFGEIDR
Sbjct: 363 VYLVSDGANKPYRLKVRAPGFAHLAGLNEMATGHMLADVVAIIGTQDIVFGEIDR 417
>gi|237746748|ref|ZP_04577228.1| NADH-ubiquinone oxidoreductase D subunit [Oxalobacter formigenes
HOxBLS]
gi|229378099|gb|EEO28190.1| NADH-ubiquinone oxidoreductase D subunit [Oxalobacter formigenes
HOxBLS]
Length = 417
Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/415 (72%), Positives = 368/415 (88%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHP+AHGVLRLILEL+GE + +ADPHIG+LHRATEKLAEQRTYLQ+LPY
Sbjct: 3 EIRNYTVNFGPQHPSAHGVLRLILELDGETIVRADPHIGMLHRATEKLAEQRTYLQALPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMC+EHAYVMAIEK+L +++P+RAQYIRVMFDEITR+++HL+W+G+ +LD+G
Sbjct: 63 MDRLDYVSMMCSEHAYVMAIEKMLGLEVPVRAQYIRVMFDEITRIMSHLLWLGAQALDMG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+DCYEA SGARMHAAYYRPGGV RDLP+ MPQ+K + +++K K
Sbjct: 123 AMAVFLYAFREREDLMDCYEAASGARMHAAYYRPGGVSRDLPDAMPQFKKTRFQSDKRVK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN NRQGSLLDFIE+FT+RFP +DEYETLLT NRIWKQRLVG+GV+SPE AL+ GFTG
Sbjct: 183 TLNANRQGSLLDFIENFTDRFPTCVDEYETLLTGNRIWKQRLVGVGVISPEEALASGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV+WDLRKKQPYE+Y+ L+F IP+GK GD YDRYLVR+EE+RQSN+II+QC+ W
Sbjct: 243 PMLRGSGVEWDLRKKQPYEVYDRLDFAIPVGKEGDCYDRYLVRVEELRQSNRIIRQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV S++ +++ P R MK+ ME+LIHHFKLFTEGF++P+GEIYS VE PKGEFG
Sbjct: 303 LRKNPGPVKSDDYRVSPPPREKMKAGMEELIHHFKLFTEGFHLPVGEIYSAVEAPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKP+R+KIR+P F HLQ L +++ GH+I D V +IG+ DIVFGE+DR
Sbjct: 363 IYLVSDGANKPFRMKIRAPSFVHLQGLEQLVRGHLIPDAVAVIGSIDIVFGEVDR 417
>gi|119897690|ref|YP_932903.1| NADH dehydrogenase subunit D [Azoarcus sp. BH72]
gi|218534386|sp|A1K5B1.1|NUOD_AZOSB RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|119670103|emb|CAL94016.1| putative NADH-ubiquinone oxidoreductase chain D [Azoarcus sp. BH72]
Length = 417
Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/415 (73%), Positives = 367/415 (88%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHP+AHGVLRL+LEL+GEVV +ADPHIGLLHR TEKLAE RT++QS+PY
Sbjct: 3 EIRNYTINFGPQHPSAHGVLRLVLELDGEVVERADPHIGLLHRGTEKLAETRTWVQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAY MAIE+LL +++P+RAQYIRVMFDEITR+LNHL+ IG+H+LDIG
Sbjct: 63 MDRLDYVSMMCNEHAYCMAIERLLGVEVPLRAQYIRVMFDEITRILNHLLNIGTHALDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM ++LY FREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQY+ + +N K
Sbjct: 123 AMTMVLYTFREREDLMDAYEAVSGARMHAAYYRPGGVYRDLPDRMPQYQPNKFKNANVVK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN RQGSLLDF++DFT RFP+ DEYETLLTDNRIWKQR VGIGVV+PE+AL+ GF+G
Sbjct: 183 DLNAARQGSLLDFLDDFTQRFPRYCDEYETLLTDNRIWKQRTVGIGVVTPEQALAWGFSG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PM+RGSG+ WDLRKKQPYE+Y+ ++FDIP+GKNGD YDRYL R+EEMRQSN+II+QCI W
Sbjct: 243 PMIRGSGIAWDLRKKQPYEVYDKVDFDIPVGKNGDCYDRYLCRMEEMRQSNRIIRQCIDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+K+ P+R MKSNME+LIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVITDNHKVAPPSREQMKSNMEELIHHFKLFTEGMHVPKGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y VSDGANKPYR+K+R+PGFAHL ++ E+ GHMI+DVV IIGT D+VFGEIDR
Sbjct: 363 VYAVSDGANKPYRLKLRAPGFAHLAAMDEISRGHMIADVVAIIGTMDVVFGEIDR 417
>gi|319943351|ref|ZP_08017633.1| NADH-quinone oxidoreductase subunit D [Lautropia mirabilis ATCC
51599]
gi|319743166|gb|EFV95571.1| NADH-quinone oxidoreductase subunit D [Lautropia mirabilis ATCC
51599]
Length = 419
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/418 (75%), Positives = 367/418 (87%), Gaps = 4/418 (0%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LE++GEVV++ADPHIGLLHRATEKLAEQRTYLQ+LPY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEMDGEVVQRADPHIGLLHRATEKLAEQRTYLQTLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYV+A+EK+L I+ PIRA+YIRVMFDEITR+LNHLMWIGSH+LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYVLAVEKMLGIEAPIRARYIRVMFDEITRILNHLMWIGSHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSI---IRNNK 455
AM V+LYAFRERE L DCYEAVSGARMHAAYYRPGGV DLP M +YK+ I ++
Sbjct: 123 AMAVILYAFREREALFDCYEAVSGARMHAAYYRPGGVDGDLPGTMAKYKAGGKGGISESR 182
Query: 456 ATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMG 515
A K LN +RQGSLLDFIE FT+ FP +DEYETLLTDNRIWKQRLVGIGVV PERA ++G
Sbjct: 183 A-KALNLDRQGSLLDFIESFTDVFPTCVDEYETLLTDNRIWKQRLVGIGVVEPERAKALG 241
Query: 516 FTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQC 575
TGPMLRGSGV WDLRK QPY +Y+ ++FDIP+G NGDSYDRYLVR+ EMRQSN+II+QC
Sbjct: 242 LTGPMLRGSGVVWDLRKFQPYAVYDKVDFDIPVGVNGDSYDRYLVRVNEMRQSNRIIRQC 301
Query: 576 IKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
++WLR+N GP++ ++ K+ P R+ MKSNME+LIHHFK FTEG +VP GE Y+ VEHPKG
Sbjct: 302 VEWLRANPGPIMIDDYKVAPPKRVAMKSNMEELIHHFKYFTEGMHVPEGEAYAAVEHPKG 361
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFGIYLVSDGANKPYR+KIR PGF HLQ+L EM GHM++DVVT+IG+QDIVFGEIDR
Sbjct: 362 EFGIYLVSDGANKPYRMKIRPPGFVHLQALDEMSRGHMLADVVTLIGSQDIVFGEIDR 419
>gi|78485165|ref|YP_391090.1| NADH dehydrogenase subunit D [Thiomicrospira crunogena XCL-2]
gi|123555685|sp|Q31HF7.1|NUOD_THICR RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|78363451|gb|ABB41416.1| NADH dehydrogenase chain D [Thiomicrospira crunogena XCL-2]
Length = 417
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/415 (74%), Positives = 360/415 (86%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y LNFGPQHP+AHGVLRL+LEL+GE + ++DPHIGLLHR TEKLAE + + QS+ Y
Sbjct: 3 EIRNYTLNFGPQHPSAHGVLRLVLELDGETIVRSDPHIGLLHRGTEKLAEYKPFNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVM IEK+L I++P RAQYIRVMFDEITR+LNHLMW+G+H+LDIG
Sbjct: 63 MDRLDYVSMMANEHAYVMGIEKMLGIEVPERAQYIRVMFDEITRILNHLMWLGAHALDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+DCYEAVSGARMHA YYRPGGVYRDLP+ M +Y+ S + K
Sbjct: 123 AMTVFLYAFREREDLMDCYEAVSGARMHATYYRPGGVYRDLPDTMAKYEESKWHSGKKLD 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE R+GSLLDFIE FT RFP +DEYETLLTDNRIWKQR V IG+VSPERAL +GFTG
Sbjct: 183 QLNETREGSLLDFIEAFTERFPGYVDEYETLLTDNRIWKQRTVDIGIVSPERALQLGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPYE+Y+ L+FDIP+G GD YDRYLVR+ EMR+SNKIIKQC+KW
Sbjct: 243 PMLRGSGIAWDLRKKQPYEVYDKLDFDIPVGATGDCYDRYLVRVAEMRESNKIIKQCVKW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L+ N GPVIS+++K+T P+R + KSNME LIHHFKLFTEG+ VP GE Y+ VEHPKGEFG
Sbjct: 303 LKENPGPVISDDHKVTPPSREDAKSNMEALIHHFKLFTEGYSVPEGESYTAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY+VSDGANKPYR+K+R+PGFAHL SL EM GHMI+DVV IIGTQDIVFGE+DR
Sbjct: 363 IYMVSDGANKPYRLKVRAPGFAHLASLDEMAKGHMIADVVAIIGTQDIVFGEVDR 417
>gi|386828043|ref|ZP_10115150.1| NADH dehydrogenase I, D subunit [Beggiatoa alba B18LD]
gi|386428927|gb|EIJ42755.1| NADH dehydrogenase I, D subunit [Beggiatoa alba B18LD]
Length = 417
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/415 (75%), Positives = 364/415 (87%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRL+LEL+GEV+ +ADPHIGLLHRATEKLAE + + QS+PY
Sbjct: 3 EIRNYTMNFGPQHPAAHGVLRLVLELDGEVIERADPHIGLLHRATEKLAENKPFNQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIE++L I+ PIRA+YIRVMFDEITR+LNHLMW+G+H+LDIG
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIERMLGIEPPIRAKYIRVMFDEITRILNHLMWLGAHALDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+DCYEAVSGARMHAAYYRPGGVYRDLP++M Y+ S N K
Sbjct: 123 AMTVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDVMAPYEVSKWHNPKEVD 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN +R+GSLLDFIE FT RFP +DEYETLLT+NRIWKQR VGIGVV+PERAL +GF+G
Sbjct: 183 RLNAHRRGSLLDFIEAFTERFPAYVDEYETLLTENRIWKQRTVGIGVVTPERALQLGFSG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
+LRGSG++WDLRKKQPYE+Y+ L+FDIP+G NGD YDRYLVRIEEMRQSN IIKQCI W
Sbjct: 243 VLLRGSGIEWDLRKKQPYEVYDRLDFDIPVGVNGDCYDRYLVRIEEMRQSNHIIKQCIDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+ ++NK+TSP R MK +ME LIHHFKLFTEG+ VP GE+YS VEHPKGEFG
Sbjct: 303 LRKNPGPVMVDDNKVTSPRRETMKGDMESLIHHFKLFTEGYSVPAGEVYSAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDG+NKPYR+KIR+PGF HL ++ E+ GHM++DVV IIGT DIVFGEIDR
Sbjct: 363 IYLVSDGSNKPYRLKIRAPGFPHLAAMDELSKGHMLADVVAIIGTIDIVFGEIDR 417
>gi|148244392|ref|YP_001219086.1| NADH dehydrogenase subunit D [Candidatus Vesicomyosocius okutanii
HA]
gi|229891305|sp|A5CXG0.1|NUOD_VESOH RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|146326219|dbj|BAF61362.1| NADH dehydrogenase I chain D [Candidatus Vesicomyosocius okutanii
HA]
Length = 417
Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/415 (73%), Positives = 360/415 (86%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y LNFGPQHPAAHGVLRLILE++GEV+ +ADPHIGLLHR TEKL E + Y QS+ Y
Sbjct: 3 EIRNYTLNFGPQHPAAHGVLRLILEIDGEVIERADPHIGLLHRGTEKLVESKPYNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIE +LN+K+P RAQYIRVMFDEITR+LNHLMW+G+H LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEAMLNLKVPKRAQYIRVMFDEITRILNHLMWLGTHGLDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM + LYAFRERE L+DCYEAVSG+RMHA YYRPGGVYRDLP+ MPQY +S R +K +
Sbjct: 123 AMSIFLYAFREREKLIDCYEAVSGSRMHATYYRPGGVYRDLPDKMPQYLASDFRTSKELE 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NENRQGSLLDFI DF FPK+I +Y+ LLTDNRIWKQRLV IGVVS RA +GFTG
Sbjct: 183 TMNENRQGSLLDFIADFVKEFPKSIKQYDDLLTDNRIWKQRLVNIGVVSANRAKQLGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV+WDLRK QPY +Y+ L FDIP+G GDSYDRYLVR+EEMRQSN IIKQC+KW
Sbjct: 243 PMLRGSGVEWDLRKNQPYAVYDQLKFDIPVGMTGDSYDRYLVRMEEMRQSNYIIKQCVKW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N G V+S+++K++ P R NMK++ME LIHHFKLFTEG+ +P GE+Y VEHPKGEFG
Sbjct: 303 LRENPGAVMSDDHKVSQPKRTNMKNDMESLIHHFKLFTEGYCLPEGEVYRAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YL+SDGANKPYR+KIR+PGF+HL +++EM GHM+SDVVTIIGTQD+VFGEIDR
Sbjct: 363 VYLISDGANKPYRVKIRAPGFSHLAAMNEMTRGHMLSDVVTIIGTQDVVFGEIDR 417
>gi|292493665|ref|YP_003529104.1| NADH dehydrogenase I subunit D [Nitrosococcus halophilus Nc4]
gi|291582260|gb|ADE16717.1| NADH dehydrogenase I, D subunit [Nitrosococcus halophilus Nc4]
Length = 417
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/415 (73%), Positives = 361/415 (86%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI+++ LNFGPQHPAAHGVLRL+LE++GEV+++ADPH+GLLHRATEKLAE + + QS+ Y
Sbjct: 3 EIRNFTLNFGPQHPAAHGVLRLVLEMDGEVIQRADPHVGLLHRATEKLAESKPFNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEH YV AIEKLL I+ P+RAQYIRVMFDEITR+LNHLMW+G+H LDIG
Sbjct: 63 MDRLDYVSMMCNEHGYVSAIEKLLGIEPPLRAQYIRVMFDEITRILNHLMWLGAHGLDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LY FREREDL+DCYEA SGARMHA YYRPGGVYRDLP+ MPQY+ S + K
Sbjct: 123 AMTVFLYCFREREDLMDCYEAASGARMHATYYRPGGVYRDLPDTMPQYQPSKWHDEKEIA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN+NRQGSLLDFIEDF RFP+ +DEYETLLTDNRIWKQR VGIGVV PERAL +GFTG
Sbjct: 183 ALNQNRQGSLLDFIEDFAARFPRCVDEYETLLTDNRIWKQRTVGIGVVEPERALQLGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV+WDLRKKQPY +Y+ L+FDIP+G NGD YDRYLVR+EEMRQSN+II+QC+ W
Sbjct: 243 PMLRGSGVEWDLRKKQPYAVYDRLDFDIPVGVNGDCYDRYLVRMEEMRQSNRIIQQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+ +N K+ P+R +MK +ME LIHHFKLFTEG+ VP GE+Y+ VE PKGEFG
Sbjct: 303 LRKNPGPVMVDNYKVAPPSREDMKDDMEALIHHFKLFTEGYCVPEGEVYAAVEAPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YL+SDGANKPYR+K+R+PGFAH+ ++ EM+ GHM++DVV +IGT DIVFGEIDR
Sbjct: 363 VYLISDGANKPYRLKVRAPGFAHIAAMDEMVQGHMLADVVAVIGTMDIVFGEIDR 417
>gi|77166020|ref|YP_344545.1| NADH dehydrogenase subunit D [Nitrosococcus oceani ATCC 19707]
gi|254436326|ref|ZP_05049832.1| NADH dehydrogenase (quinone), D subunit [Nitrosococcus oceani
AFC27]
gi|123593540|sp|Q3J831.1|NUOD_NITOC RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|76884334|gb|ABA59015.1| NADH dehydrogenase subunit D [Nitrosococcus oceani ATCC 19707]
gi|207088016|gb|EDZ65289.1| NADH dehydrogenase (quinone), D subunit [Nitrosococcus oceani
AFC27]
Length = 417
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/415 (74%), Positives = 358/415 (86%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI+++ LNFGPQHPAAHGVLRL+LE++GE++++ADPH+GLLHRATEKLAE + + QS+ Y
Sbjct: 3 EIRNFTLNFGPQHPAAHGVLRLVLEMDGEIIQRADPHVGLLHRATEKLAESKPFNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEH YV AIE LL I+ P+RAQYIR MFDEITR+LNHLMW+G+H LDIG
Sbjct: 63 MDRLDYVSMMCNEHGYVKAIETLLGIEPPLRAQYIRTMFDEITRILNHLMWLGAHGLDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LY FREREDL+DCYEAVSGARMHA YYRPGGVYRDLPE MP Y+ S N K
Sbjct: 123 AMTVFLYCFREREDLMDCYEAVSGARMHATYYRPGGVYRDLPETMPGYQPSKWHNEKEVA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
I+N NR+GSLLDFIEDFT RFP +DEYETLLTDNRIWKQR VGIGVV+PERAL +GFTG
Sbjct: 183 IINRNREGSLLDFIEDFTARFPTCVDEYETLLTDNRIWKQRTVGIGVVTPERALQLGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV+WDLRKKQPY Y+ ++FDIP+G NGD YDRYLVRIEEMRQSN+IIKQC+ W
Sbjct: 243 PMLRGSGVEWDLRKKQPYAAYDQIDFDIPVGVNGDCYDRYLVRIEEMRQSNQIIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI NN K+ +P R MK++ME LIHHFKLFTEG+ VP GE Y+ VE PKGEFG
Sbjct: 303 LRKNPGPVIVNNYKVAAPPREKMKNDMEVLIHHFKLFTEGYCVPEGEAYAAVEAPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YL+SDGANKPYR+K+R+PGFAHL ++ EM+ GHM++DVV IIGT DIVFGEIDR
Sbjct: 363 VYLISDGANKPYRLKVRAPGFAHLAAMDEMVQGHMLADVVAIIGTMDIVFGEIDR 417
>gi|300113268|ref|YP_003759843.1| NADH dehydrogenase I subunit D [Nitrosococcus watsonii C-113]
gi|299539205|gb|ADJ27522.1| NADH dehydrogenase I, D subunit [Nitrosococcus watsonii C-113]
Length = 417
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/415 (74%), Positives = 359/415 (86%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI+++ LNFGPQHPAAHGVLRL+LE++GE++++ADPH+GLLHRATEKLAE + + QS+ Y
Sbjct: 3 EIQNFTLNFGPQHPAAHGVLRLVLEMDGEIIQRADPHVGLLHRATEKLAESKPFNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMC+EH YV AIEKLL I+ P+RAQYIR MFDEITR+LNHLMW+G+H LDIG
Sbjct: 63 MDRLDYVSMMCSEHGYVKAIEKLLGIEPPLRAQYIRTMFDEITRILNHLMWLGAHGLDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LY FREREDL+DCYEAVSGARMHA YYRPGGVYRDLPE MP Y+ S N K
Sbjct: 123 AMTVFLYCFREREDLMDCYEAVSGARMHATYYRPGGVYRDLPETMPGYQLSKWHNEKEIA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN NR+GSLLDFIEDFT RFP +DEYETLLTDNRIWKQR VGIGVV+PERAL +GFTG
Sbjct: 183 ALNRNREGSLLDFIEDFTTRFPTCVDEYETLLTDNRIWKQRTVGIGVVTPERALQLGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV+WDLRKKQPY +Y+ ++FDIP+G NGD YDRYLVRIEEMRQSN+II+QC+ W
Sbjct: 243 PMLRGSGVEWDLRKKQPYAVYDQVDFDIPVGVNGDCYDRYLVRIEEMRQSNQIIRQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI NN K+ +P R MK++ME LIHHFKLFTEG+ VP GE Y+ VE PKGEFG
Sbjct: 303 LRKNPGPVIVNNYKVAAPPREEMKNDMEVLIHHFKLFTEGYCVPEGEAYAAVEAPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YL+SDGANKPYR+KIR+PGFAHL ++ EM+ GHM++DVV IIGT DIVFGEIDR
Sbjct: 363 VYLISDGANKPYRLKIRAPGFAHLAAMDEMVQGHMLADVVAIIGTMDIVFGEIDR 417
>gi|383757415|ref|YP_005436400.1| NADH-quinone oxidoreductase, D subunit NuoD [Rubrivivax gelatinosus
IL144]
gi|381378084|dbj|BAL94901.1| NADH-quinone oxidoreductase, D subunit NuoD [Rubrivivax gelatinosus
IL144]
Length = 417
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/415 (73%), Positives = 361/415 (86%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T+LQ+LPY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAETKTFLQTLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +A+EKLL I++P+RA+YIR MF E+TRLLNHL+W+G+HSLD G
Sbjct: 63 MDRLDYVSMMVNEQAYCLAVEKLLGIEVPLRAKYIRTMFAELTRLLNHLLWLGTHSLDCG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFRERED+ D YEAVSGARMHAAY+RPGGVYRDLP+ MPQY S IRN + K
Sbjct: 123 AMNVFLYAFREREDIFDMYEAVSGARMHAAYFRPGGVYRDLPDSMPQYTFSKIRNERGMK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN RQGSLLDFIE+F RFP +D+YETLLTDNRIWKQR VGIGVV P+RA ++GFTG
Sbjct: 183 ELNAKRQGSLLDFIEEFVKRFPSRVDDYETLLTDNRIWKQRTVGIGVVEPDRAKALGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRK+QPY+ Y+ + FDIP+G GD+YDRYLVR+EEMRQSN I++QC+ W
Sbjct: 243 PMLRGSGIAWDLRKQQPYDAYDRVEFDIPVGVQGDTYDRYLVRMEEMRQSNHIVQQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPVI++N+K+ PAR++MK+NME+LIHHFKLF+EG +VP GE Y+ VEHPKGEFG
Sbjct: 303 LRANPGPVITDNHKVAPPARVDMKANMEELIHHFKLFSEGMHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYL+SDGANKPYR+KIR PGF HL +L EM GHM++D V IIGT DIVFGE+DR
Sbjct: 363 IYLISDGANKPYRMKIRPPGFVHLAALDEMSRGHMLADAVAIIGTMDIVFGEVDR 417
>gi|256821518|ref|YP_003145481.1| NADH dehydrogenase subunit D [Kangiella koreensis DSM 16069]
gi|256795057|gb|ACV25713.1| NADH dehydrogenase I, D subunit [Kangiella koreensis DSM 16069]
Length = 417
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/415 (74%), Positives = 358/415 (86%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRLILE++GE V +ADPH+GLLHRATEKLAE + Y QS+ Y
Sbjct: 3 EIRNYTINFGPQHPAAHGVLRLILEMDGETVVRADPHVGLLHRATEKLAESKPYNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYV++IEKL+ IK P RAQYIRV+F EITR+LNHLMWIG+H+LDIG
Sbjct: 63 MDRLDYVSMMCNEHAYVLSIEKLMGIKPPERAQYIRVLFSEITRILNHLMWIGAHALDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFRERE L+DCYEAVSGARMHA Y+RPGGVYRDLP+ MPQYK S N K
Sbjct: 123 AMTVFLYAFREREILMDCYEAVSGARMHATYFRPGGVYRDLPDEMPQYKVSPFSNEKKVD 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN NRQGSLLDFI DFT FP +DEYE LLT+NRIWKQR VGIGVV+PERAL +GF+G
Sbjct: 183 ELNANRQGSLLDFIWDFTETFPDRVDEYEALLTENRIWKQRTVGIGVVTPERALQLGFSG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPYE+Y+ + FDIPIGK GD YDRYLVR+EEMRQSNKII+QC++W
Sbjct: 243 PMLRGSGIAWDLRKKQPYEVYDKMGFDIPIGKTGDCYDRYLVRVEEMRQSNKIIRQCVEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+ N+K+T P R MK +ME LIHHFKLFTEG+ VP GE Y+ +EHPKGEFG
Sbjct: 303 LRENPGPVMLENHKVTPPDRETMKDDMEALIHHFKLFTEGYCVPEGEAYAAIEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+ GFAHL +++EM +GHM++DVV IIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRVKIRAAGFAHLSAMNEMAAGHMLADVVAIIGTQDIVFGEIDR 417
>gi|319779201|ref|YP_004130114.1| NADH-ubiquinone oxidoreductase subunit D [Taylorella equigenitalis
MCE9]
gi|397661441|ref|YP_006502141.1| NADH-quinone oxidoreductase subunit D [Taylorella equigenitalis
ATCC 35865]
gi|317109225|gb|ADU91971.1| NADH-ubiquinone oxidoreductase chain D [Taylorella equigenitalis
MCE9]
gi|394349620|gb|AFN35534.1| NADH-quinone oxidoreductase subunit D [Taylorella equigenitalis
ATCC 35865]
gi|399114632|emb|CCG17426.1| NADH-quinone oxidoreductase subunit D [Taylorella equigenitalis
14/56]
Length = 418
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/416 (74%), Positives = 361/416 (86%), Gaps = 1/416 (0%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
E+++Y LNFGPQHPAAHGVLRLILEL GEV+++ADPHIGLLHR TEKLAE +T+LQ+LPY
Sbjct: 3 ELQNYTLNFGPQHPAAHGVLRLILELNGEVIQRADPHIGLLHRGTEKLAESKTFLQTLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVM IE+LL I++PIRAQYIRVMFDEITR+LNHLM +GSH+LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMGIERLLGIEVPIRAQYIRVMFDEITRILNHLMSLGSHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYK-SSIIRNNKAT 457
AM +LY FREREDL+DCYEAVSGARMHAAYYR GGVYRDLPE MP+++ S RN +
Sbjct: 123 AMAGMLYMFREREDLMDCYEAVSGARMHAAYYRVGGVYRDLPETMPKHEIDSKYRNVREM 182
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
K LN+ R+GSLLDFIEDFT RFPK +DEYETLLTDNRIWKQRLV IG+V PERA ++GF+
Sbjct: 183 KRLNQAREGSLLDFIEDFTQRFPKCVDEYETLLTDNRIWKQRLVNIGIVEPERAKALGFS 242
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
G MLRG G++WDLR+KQPYE+Y+ L F P+G NGD YDRYL RI E+R+SNKII QC+K
Sbjct: 243 GVMLRGCGIEWDLRRKQPYEVYDKLEFMTPVGVNGDCYDRYLCRIAELRESNKIIAQCVK 302
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
WL+ N GPVI +N+KI P R +KS MEDLIHHFK FTEGF VP GE+YSCVEHPKGEF
Sbjct: 303 WLKENPGPVIVDNHKIAPPKRELIKSGMEDLIHHFKFFTEGFKVPEGEVYSCVEHPKGEF 362
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+Y++SDGANKPYR+KIR+PGF HLQS EM GHMI+D VT+IGTQDIVFGEIDR
Sbjct: 363 GVYIISDGANKPYRLKIRAPGFVHLQSFDEMTRGHMIADAVTVIGTQDIVFGEIDR 418
>gi|56478179|ref|YP_159768.1| NADH dehydrogenase subunit D [Aromatoleum aromaticum EbN1]
gi|81356984|sp|Q5P1E7.1|NUOD_AZOSE RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|56314222|emb|CAI08867.1| NADH dehydrogenase I, chain D [Aromatoleum aromaticum EbN1]
Length = 417
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/415 (73%), Positives = 363/415 (87%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHP+AHGVLRL+LEL+GEVV +ADPHIGLLHR TEKLAE RT++QS+PY
Sbjct: 3 EIRNYTINFGPQHPSAHGVLRLVLELDGEVVVRADPHIGLLHRGTEKLAETRTWVQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAY +AIE+LL +++PIRAQYIRVMFDEITR+LNHL+ IG+H+LDIG
Sbjct: 63 MDRLDYVSMMCNEHAYCLAIERLLGLEVPIRAQYIRVMFDEITRILNHLLGIGTHALDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM ++LY FREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQY + +N +
Sbjct: 123 AMTMVLYTFREREDLMDAYEAVSGARMHAAYYRPGGVYRDLPDRMPQYVVNKFKNANTVR 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNENRQGSLLDF+EDFT RF D+YETLLTDNRIWKQR VGIGVV+PE+A + GFTG
Sbjct: 183 ELNENRQGSLLDFLEDFTERFNGYCDDYETLLTDNRIWKQRTVGIGVVTPEQAKAWGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV WDLRKKQPYE+Y+ ++FDIP+GKNGD YDRYL R+EEMRQSN+I+KQCI W
Sbjct: 243 PMLRGSGVAWDLRKKQPYEVYDRMDFDIPVGKNGDCYDRYLCRMEEMRQSNRIVKQCIDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N K+ P R MK NME+LIHHFKLFTEG +VP GE+Y+ +EHPKGEFG
Sbjct: 303 LRKNPGPVIADNYKVAPPPRERMKGNMEELIHHFKLFTEGMHVPSGEVYAAIEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y VSDGANKPYR+K+R+PGFAHL ++ E+ GHMI+DVV IIGT D+VFGEIDR
Sbjct: 363 VYAVSDGANKPYRLKLRAPGFAHLAAMDEIARGHMIADVVAIIGTMDVVFGEIDR 417
>gi|345864613|ref|ZP_08816812.1| NADH-quinone oxidoreductase subunit D [endosymbiont of Tevnia
jerichonana (vent Tica)]
gi|345124310|gb|EGW54191.1| NADH-quinone oxidoreductase subunit D [endosymbiont of Tevnia
jerichonana (vent Tica)]
Length = 417
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/415 (73%), Positives = 362/415 (87%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y LNFGPQHPAAHGVLRL+LE++GEV+ +ADPHIGLLHRATEKLAE + Y QS+PY
Sbjct: 3 EIRNYTLNFGPQHPAAHGVLRLVLEMDGEVIERADPHIGLLHRATEKLAESKPYNQSIPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEH YV+AIEKLL +++P+RAQYIR MFDEITR+LNHLMW+G+H+LD+G
Sbjct: 63 MDRLDYVSMMCNEHGYVLAIEKLLGVEVPLRAQYIRTMFDEITRILNHLMWLGTHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+DCYEAVSGARMHAAYYRPGGVYRDLP+ MPQY+ S +
Sbjct: 123 AMTVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDQMPQYQQSQWTTGRDVG 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
NE RQGSLLDFI DF +RFP +DEYETLLTDNRIWKQR VGIGVVSPERAL +GFTG
Sbjct: 183 RRNEARQGSLLDFIGDFADRFPALVDEYETLLTDNRIWKQRTVGIGVVSPERALQLGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV+WDLRKKQ Y Y+ ++FDIP+G GDSYDRYLVRIEE+RQSN+IIKQC++W
Sbjct: 243 PMLRGSGVEWDLRKKQSYAAYDKVDFDIPVGVTGDSYDRYLVRIEELRQSNRIIKQCVEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPV+ +++KI P+R +MK +ME LIHHFKLF+EG+ P GE+Y+ VE PKGEFG
Sbjct: 303 LRNNPGPVMVDDHKIAPPSRSDMKGDMEGLIHHFKLFSEGYCPPAGEVYAAVEAPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
Y++SDGANKPYR+KIR+PGFAHL ++ EM+ GHM++DVV +IGT D+VFGEIDR
Sbjct: 363 CYIISDGANKPYRLKIRAPGFAHLAAMDEMVKGHMLADVVAVIGTMDVVFGEIDR 417
>gi|345877978|ref|ZP_08829709.1| NADH-quinone oxidoreductase chain D [endosymbiont of Riftia
pachyptila (vent Ph05)]
gi|344225017|gb|EGV51389.1| NADH-quinone oxidoreductase chain D [endosymbiont of Riftia
pachyptila (vent Ph05)]
Length = 427
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/415 (73%), Positives = 362/415 (87%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y LNFGPQHPAAHGVLRL+LE++GEV+ +ADPHIGLLHRATEKLAE + Y QS+PY
Sbjct: 13 EIRNYTLNFGPQHPAAHGVLRLVLEMDGEVIERADPHIGLLHRATEKLAESKPYNQSIPY 72
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEH YV+AIEKLL +++P+RAQYIR MFDEITR+LNHLMW+G+H+LD+G
Sbjct: 73 MDRLDYVSMMCNEHGYVLAIEKLLGVEVPLRAQYIRTMFDEITRILNHLMWLGTHALDVG 132
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+DCYEAVSGARMHAAYYRPGGVYRDLP+ MPQY+ S +
Sbjct: 133 AMTVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDQMPQYQQSQWTTGRDVG 192
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
NE RQGSLLDFI DF +RFP +DEYETLLTDNRIWKQR VGIGVVSPERAL +GFTG
Sbjct: 193 RRNEARQGSLLDFIGDFADRFPALVDEYETLLTDNRIWKQRTVGIGVVSPERALQLGFTG 252
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV+WDLRKKQ Y Y+ ++FDIP+G GDSYDRYLVRIEE+RQSN+IIKQC++W
Sbjct: 253 PMLRGSGVEWDLRKKQSYAAYDKVDFDIPVGVTGDSYDRYLVRIEELRQSNRIIKQCVEW 312
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPV+ +++KI P+R +MK +ME LIHHFKLF+EG+ P GE+Y+ VE PKGEFG
Sbjct: 313 LRNNPGPVMVDDHKIAPPSRSDMKGDMEGLIHHFKLFSEGYCPPAGEVYAAVEAPKGEFG 372
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
Y++SDGANKPYR+KIR+PGFAHL ++ EM+ GHM++DVV +IGT D+VFGEIDR
Sbjct: 373 CYIISDGANKPYRLKIRAPGFAHLAAMDEMVKGHMLADVVAVIGTMDVVFGEIDR 427
>gi|387130156|ref|YP_006293046.1| NADH-ubiquinone oxidoreductase subunit D [Methylophaga sp. JAM7]
gi|386271445|gb|AFJ02359.1| NADH-ubiquinone oxidoreductase chain D [Methylophaga sp. JAM7]
Length = 417
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/415 (74%), Positives = 355/415 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRLILE++GEV+ +ADPHIGLLHR TEKLAE + + QS+ Y
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLILEMDGEVIERADPHIGLLHRGTEKLAESKPFNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIEKLL I P+RAQYIRV+FDE+TR+LNHLMW+G+H LDIG
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEKLLGITPPLRAQYIRVLFDEMTRILNHLMWLGAHGLDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM + LY FREREDL+DCYEAVSGARMHA YYRPGGVYRDLP MP Y++S + K
Sbjct: 123 AMTIFLYCFREREDLMDCYEAVSGARMHATYYRPGGVYRDLPARMPLYQASKWHSQKEVD 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
N NRQGSLLDFIEDF RFP +DEYETLLTDNRIWKQR VGIGV++PERAL +GFTG
Sbjct: 183 AKNANRQGSLLDFIEDFVQRFPACVDEYETLLTDNRIWKQRTVGIGVITPERALQLGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG++WDLR+KQPYE+Y+ L F+IPIGK GD YDRYLVR+EEMRQS I++QCI W
Sbjct: 243 PMLRGSGIEWDLRRKQPYEVYDQLAFEIPIGKEGDCYDRYLVRVEEMRQSANIMQQCIDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N K+ P R +MK +ME LIHHFKLFTEG+ VP GE+Y+ VEHPKGEFG
Sbjct: 303 LRVNPGPVITDNAKVAPPHRADMKDDMEALIHHFKLFTEGYCVPEGEVYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDGANKPYR+KIR+PGF HL ++ EM GHM++DVV IIGT DIVFGEIDR
Sbjct: 363 VYLVSDGANKPYRVKIRAPGFPHLAAMDEMAKGHMLADVVAIIGTMDIVFGEIDR 417
>gi|350562011|ref|ZP_08930848.1| NADH dehydrogenase I, D subunit [Thioalkalivibrio thiocyanoxidans
ARh 4]
gi|349780329|gb|EGZ34664.1| NADH dehydrogenase I, D subunit [Thioalkalivibrio thiocyanoxidans
ARh 4]
Length = 417
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/415 (73%), Positives = 359/415 (86%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI+++ LNFGPQHP+AHGVLRL+LE++GEVV++ADPHIGLLHR TEKLAE + Y QS+ Y
Sbjct: 3 EIRNFTLNFGPQHPSAHGVLRLVLEMDGEVVQRADPHIGLLHRGTEKLAESKPYNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEH YV+A+EKLL I+ P+RAQYIRVMFDEITR+LNHL+W+G+H+LDIG
Sbjct: 63 MDRLDYVSMMCNEHGYVLAMEKLLEIEAPLRAQYIRVMFDEITRILNHLLWLGAHALDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+DCYEAVSGAR+HA YYRPGGV RDLP+ MP+Y+ S +
Sbjct: 123 AMTVFLYAFREREDLMDCYEAVSGARLHATYYRPGGVARDLPDAMPKYQPSRWKTQAEVD 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN NRQGS+LDFIE FT RFP +DEYETLLTDNRIWKQR VGIGVVSPERA +G TG
Sbjct: 183 ALNANRQGSMLDFIESFTERFPGCVDEYETLLTDNRIWKQRTVGIGVVSPERAKQLGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV+WDLR+KQPYE+Y+ L+FDIP+G NGD YDRYLVRIEEMRQSN+II+QCI W
Sbjct: 243 PMLRGSGVEWDLRRKQPYEVYDRLDFDIPVGVNGDCYDRYLVRIEEMRQSNRIIRQCIDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPV+ N K+ P R MK++ME LIHHFKLFTEGF +P GE+Y+ VEHPKGEFG
Sbjct: 303 LRANPGPVLLENYKVAPPRREEMKADMEALIHHFKLFTEGFCLPEGEVYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDGANKPYR+K+R+PGF HL +L EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 363 VYLVSDGANKPYRLKVRAPGFVHLSALDEMARGHMLADVVAIIGTQDIVFGEVDR 417
>gi|348589819|ref|YP_004874281.1| NADH-ubiquinone oxidoreductase subunit D [Taylorella asinigenitalis
MCE3]
gi|347973723|gb|AEP36258.1| NADH-ubiquinone oxidoreductase chain D [Taylorella asinigenitalis
MCE3]
Length = 418
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/416 (74%), Positives = 361/416 (86%), Gaps = 1/416 (0%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
E+++Y LNFGPQHPAAHGVLRLILEL GEV+++ADPHIGLLHR TEKLAE +T+LQ+LPY
Sbjct: 3 ELQNYTLNFGPQHPAAHGVLRLILELNGEVIQRADPHIGLLHRGTEKLAESKTFLQALPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVM IE+LL I++PIRAQYIRVMFDEITR+LNHLM +GSH+LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMGIERLLGIEVPIRAQYIRVMFDEITRILNHLMSLGSHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYK-SSIIRNNKAT 457
AM +LY FREREDL+DCYEAVSGARMHAAYYR GGVYRDLP+ MP+++ S RN +
Sbjct: 123 AMAGMLYMFREREDLMDCYEAVSGARMHAAYYRVGGVYRDLPDTMPKHEIDSKYRNVREM 182
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
K LN+ R+GSLLDFIEDFT RFPK +DEYETLLTDNRIWKQRLV IG+V PERA ++GF+
Sbjct: 183 KRLNQAREGSLLDFIEDFTQRFPKCVDEYETLLTDNRIWKQRLVNIGIVEPERAKALGFS 242
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
G MLRG G++WDLR+KQPYE+Y+ L F P+G NGD YDRYL RI E+R+SNKII QC+K
Sbjct: 243 GVMLRGCGIEWDLRRKQPYEVYDKLEFMTPVGVNGDCYDRYLCRIAELRESNKIIAQCVK 302
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
WL+ N GPVI +N+KI P R +KS MEDLIHHFK FTEGF VP GE+YSCVEHPKGEF
Sbjct: 303 WLKENPGPVIVDNHKIAPPKRELIKSGMEDLIHHFKFFTEGFPVPEGEVYSCVEHPKGEF 362
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+Y++SDGANKPYR+KIR+PGF HLQS EM GHMI+D VT+IGTQDIVFGEIDR
Sbjct: 363 GVYIISDGANKPYRLKIRAPGFVHLQSFDEMTRGHMIADAVTVIGTQDIVFGEIDR 418
>gi|406998656|gb|EKE16568.1| hypothetical protein ACD_10C00911G0004 [uncultured bacterium]
Length = 417
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/415 (73%), Positives = 358/415 (86%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ LNFGPQHPAAHGVLRL+LEL+GEVV++ADPHIGLLHRATEKLAE RT++QS+PY
Sbjct: 3 DIRNFTLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRATEKLAETRTWVQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAY +A EKLL I++P R +YIR MFDE+TRLLNHL+WIG H+LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYCLATEKLLGIEVPERGKYIRTMFDEVTRLLNHLLWIGCHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM + LY FREREDL+D YEAVSGAR+HAAYYRPGGVYRDLP+ MPQY++S + K K
Sbjct: 123 AMTMALYTFREREDLMDAYEAVSGARLHAAYYRPGGVYRDLPDRMPQYEASTWTSAKKAK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN NR GSLLDF+EDFTNRFP EY TLLTDNRIWKQRLV +GVV+PER L MGF+G
Sbjct: 183 ELNVNRGGSLLDFLEDFTNRFPTYHSEYHTLLTDNRIWKQRLVNVGVVTPERGLQMGFSG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ WDLRKKQPY Y+ ++FDIP+G NGDSYDRYLVR+EEM QSN+IIKQCI W
Sbjct: 243 AMLRGSGIAWDLRKKQPYAAYDKVDFDIPVGVNGDSYDRYLVRMEEMLQSNRIIKQCIDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI+ N+K+ P R +MKSNME+LIHHFKLFTEG +VP GE Y+ +EHPKGEFG
Sbjct: 303 LRKNPGPVITENHKVAPPPREDMKSNMEELIHHFKLFTEGIHVPAGEAYAAIEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY +SDGANKPYR+KIR+PG+ HL + EM GHMI+DVVTIIGTQDIVFGEIDR
Sbjct: 363 IYFISDGANKPYRMKIRAPGYVHLAGMDEMARGHMIADVVTIIGTQDIVFGEIDR 417
>gi|333913093|ref|YP_004486825.1| NAD(P)H-quinone oxidoreductase subunit H [Delftia sp. Cs1-4]
gi|333743293|gb|AEF88470.1| NAD(P)H-quinone oxidoreductase subunit H [Delftia sp. Cs1-4]
Length = 417
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/415 (73%), Positives = 360/415 (86%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEVV++ADPHIGLLHRATEKLAE +TY+QSLPY
Sbjct: 3 EIKNYSLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRATEKLAESKTYIQSLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAY +AIEKLL I++PIRAQYIRVM+ EITR++NHLMW+GS D G
Sbjct: 63 MDRLDYVSMMCNEHAYCLAIEKLLGIEVPIRAQYIRVMYSEITRIMNHLMWLGSSGNDAG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+ L+Y FREREDL+D YEAVSGARMHAAY+RPGGVYRDLP+ MPQYK+S +RN ++ +
Sbjct: 123 SSTTLIYTFREREDLMDMYEAVSGARMHAAYFRPGGVYRDLPDTMPQYKASKVRNARSVE 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
I+N NR GSLLDFI+DFT RFPK DEYETLLTDNRIWKQR V IGVV+ ERA+++G TG
Sbjct: 183 IMNRNRHGSLLDFIDDFTQRFPKCADEYETLLTDNRIWKQRNVDIGVVTAERAMNLGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLR SGV WD+RK QPYE+Y+ ++FD+P+GK GD YDRYLVR+ EMRQSN+IIKQC+ W
Sbjct: 243 PMLRASGVAWDMRKSQPYEVYDRMDFDVPVGKTGDCYDRYLVRVAEMRQSNRIIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPVI +N+KI P R MKSNME+LIHHFKLFTEGF VP GE Y+ +EHPKGEFG
Sbjct: 303 LRANPGPVIVDNHKIAPPPREGMKSNMEELIHHFKLFTEGFRVPEGEAYAAIEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY+VSDGANKPYR+KIR PGFA+L ++ EM GHM++D V ++ T DIVFG++DR
Sbjct: 363 IYIVSDGANKPYRLKIRPPGFANLSAMDEMCRGHMLADAVMVLSTLDIVFGDVDR 417
>gi|350570511|ref|ZP_08938864.1| NADH-quinone oxidoreductase subunit D [Neisseria wadsworthii 9715]
gi|349796136|gb|EGZ49926.1| NADH-quinone oxidoreductase subunit D [Neisseria wadsworthii 9715]
Length = 418
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/415 (73%), Positives = 360/415 (86%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILELEGE + +ADPHIGLLHR TEKLAE RTYLQ+LPY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELEGETIVRADPHIGLLHRGTEKLAETRTYLQALPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +A+EKL +++PIRAQYIRVMF E+TR+LNHLM IGSH+LDIG
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLTGVEVPIRAQYIRVMFAEVTRILNHLMGIGSHALDIG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFRERE+L+D YEAVSGARMHAAY+RPGGVYRDLP+ MP+Y+SS RN K K
Sbjct: 124 AMTVFLYAFREREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLK 183
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE+R+G++LDFIE FT+RFP +DEYE+LLTDNRIWKQR VGIGVVSPERAL GFTG
Sbjct: 184 KLNESREGTMLDFIEAFTDRFPSCVDEYESLLTDNRIWKQRTVGIGVVSPERALQKGFTG 243
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WD+RKK PY+ Y ++FDIP+G NGD YDRYL RI EMR+SN+IIKQC++W
Sbjct: 244 VMLRGSGVEWDIRKKAPYDAYANVDFDIPVGVNGDCYDRYLCRINEMRESNRIIKQCVQW 303
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L++N GPVI +N+K+ P R MK MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 304 LKANPGPVIVDNHKVAPPKRTEMKMGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEFG 363
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY++SDGANKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 364 IYMISDGANKPYRLKIRAPGFAHLQGMDEMARGHMLADVVAIIGTQDIVFGEVDR 418
>gi|118602278|ref|YP_903493.1| NADH dehydrogenase subunit D [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
gi|229891301|sp|A1AVR5.1|NUOD_RUTMC RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|118567217|gb|ABL02022.1| NADH dehydrogenase subunit D [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
Length = 417
Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/415 (73%), Positives = 356/415 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y LNFGPQHPAAHGVLRLILE++GEV+ +ADPHIGLLHR TEKL E + Y QS+ Y
Sbjct: 3 EIRNYTLNFGPQHPAAHGVLRLILEIDGEVIERADPHIGLLHRGTEKLVESKPYNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAY+MAIE +L IK+P RAQYIRVMFDEITR+LNHLMW+G+H LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYIMAIETMLGIKVPERAQYIRVMFDEITRILNHLMWLGTHGLDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM + LYAFRERE L+DCYEAVSG+RMHA YYRPGGVYRDLP+ MPQY +S R +K K
Sbjct: 123 AMSIFLYAFREREKLIDCYEAVSGSRMHATYYRPGGVYRDLPDKMPQYLASGFRTDKELK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NENRQGSLLDFI DF FPK+I +Y+ LLTDNRIWKQRLV IG+VS RA +GFTG
Sbjct: 183 TMNENRQGSLLDFIADFVKEFPKSIKQYDDLLTDNRIWKQRLVNIGIVSANRAKQLGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV WDLRK QPY +Y+ L FDIP+G GDSYDRYLVR+EEMRQSN IIKQC+KW
Sbjct: 243 PMLRGSGVAWDLRKNQPYAVYDQLEFDIPVGVTGDSYDRYLVRMEEMRQSNHIIKQCVKW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L+ N G V+S+++K++ P R +MK +ME LIHHFKLFTEG+ + GEIY VEHPKGEFG
Sbjct: 303 LQGNPGAVMSDDHKVSPPKRTDMKGDMESLIHHFKLFTEGYCLSEGEIYRAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYL+SDGANKPYR+KIR+PGFAHL +++EM GHM+SDVVTIIGTQDIVFGEIDR
Sbjct: 363 IYLISDGANKPYRVKIRAPGFAHLAAMNEMARGHMLSDVVTIIGTQDIVFGEIDR 417
>gi|160900609|ref|YP_001566191.1| NADH dehydrogenase subunit D [Delftia acidovorans SPH-1]
gi|218534404|sp|A9BNB1.1|NUOD_DELAS RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|160366193|gb|ABX37806.1| NADH dehydrogenase I, D subunit [Delftia acidovorans SPH-1]
Length = 417
Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/415 (72%), Positives = 360/415 (86%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEVV++ADPHIGLLHRATEKLAE +TY+QSLPY
Sbjct: 3 EIKNYSLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRATEKLAESKTYIQSLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAY +AIEKLL I++PIRAQYIRVM+ EITR++NHLMW+GS D G
Sbjct: 63 MDRLDYVSMMCNEHAYCLAIEKLLGIEVPIRAQYIRVMYSEITRIMNHLMWLGSSGNDAG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+ L+Y FREREDL+D YEAVSGARMHAAY+RPGGVYRDLP+ MPQYK+S +RN ++ +
Sbjct: 123 SSTTLIYTFREREDLMDMYEAVSGARMHAAYFRPGGVYRDLPDTMPQYKASKVRNARSVE 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
I+N NR GSLLDFI+DFT RFPK DEYETLLTDNRIWKQR V IGVV+ ERA+++G TG
Sbjct: 183 IMNRNRHGSLLDFIDDFTQRFPKCADEYETLLTDNRIWKQRNVDIGVVTAERAMNLGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLR SGV WD+RK QPYE+Y+ ++FD+P+GK GD YDRYLVR+ EMRQSN+IIKQC+ W
Sbjct: 243 PMLRASGVAWDMRKSQPYEVYDRMDFDVPVGKTGDCYDRYLVRVAEMRQSNRIIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPVI +N+KI P R MKSNME+LIHHFKLFTEGF VP GE Y+ +EHPKGEFG
Sbjct: 303 LRANPGPVIVDNHKIAPPPREGMKSNMEELIHHFKLFTEGFRVPEGEAYAAIEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY+VSDGANKPYR+KIR PGFA+L ++ E+ GHM++D V ++ T DIVFG++DR
Sbjct: 363 IYIVSDGANKPYRLKIRPPGFANLSAMDELCRGHMLADAVMVLSTLDIVFGDVDR 417
>gi|349575442|ref|ZP_08887359.1| NADH-quinone oxidoreductase subunit D [Neisseria shayeganii 871]
gi|348013021|gb|EGY51948.1| NADH-quinone oxidoreductase subunit D [Neisseria shayeganii 871]
Length = 418
Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/415 (73%), Positives = 358/415 (86%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILELEGE + +ADPHIGLLHR TEKLAE RTYLQ+LPY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELEGETIVRADPHIGLLHRGTEKLAETRTYLQALPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +A+EKL I++PIRAQYIRVMF E+TR+LNHLM IGSH+LDIG
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLTGIEVPIRAQYIRVMFAEVTRILNHLMGIGSHALDIG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFRERE+L+D YEAVSGARMHAAY+RPGGVYRDLP+ MP+Y+SS RN K K
Sbjct: 124 AMTVFLYAFREREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLK 183
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE+R+G++LDFIE FT RFP +DEYE LLTDNRIWKQR VGIGVVSPERAL GFTG
Sbjct: 184 KLNESREGTMLDFIEAFTERFPSCVDEYENLLTDNRIWKQRTVGIGVVSPERALQKGFTG 243
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG++WD+RKK PY+ Y ++FDIP+G NGD YDRYL RI EMR+SN+IIKQC++W
Sbjct: 244 VMLRGSGIEWDIRKKAPYDAYANVDFDIPVGVNGDCYDRYLCRINEMRESNRIIKQCVQW 303
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L++N GPVI +N+K+ P R MK MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 304 LKANPGPVIVDNHKVAPPKRTEMKMGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEFG 363
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY++SDGANKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 364 IYMISDGANKPYRLKIRAPGFAHLQGMDEMARGHMLADVVAIIGTQDIVFGEVDR 418
>gi|399116506|emb|CCG19312.1| NADH-quinone oxidoreductase subunit D [Taylorella asinigenitalis
14/45]
Length = 418
Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/416 (74%), Positives = 360/416 (86%), Gaps = 1/416 (0%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
E+++Y LNFGPQHPAAHGVLRLILEL GEV+++ADPHIGLLHR TEKLAE +T+LQ+LPY
Sbjct: 3 ELQNYTLNFGPQHPAAHGVLRLILELNGEVIQRADPHIGLLHRGTEKLAESKTFLQALPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVM IE+LL I++PIRAQYIRVMFDEITR+LNHLM +GSH+LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMGIERLLGIEVPIRAQYIRVMFDEITRILNHLMSLGSHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYK-SSIIRNNKAT 457
AM +LY FREREDL+DCYEAVSGARMHAAYYR GGVYRDLP+ MP+++ S RN +
Sbjct: 123 AMAGMLYMFREREDLMDCYEAVSGARMHAAYYRVGGVYRDLPDTMPKHEIDSKYRNVREM 182
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
K LN+ R+GSLLDFIEDFT RFPK +DEYETLLTDNRIWKQRLV IG+V PERA ++GF+
Sbjct: 183 KRLNQAREGSLLDFIEDFTQRFPKCVDEYETLLTDNRIWKQRLVDIGIVEPERAKALGFS 242
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
G MLRG G++WDLR+KQPYE+Y+ L F P+G NGD YDRYL RI E+R+SNKII QC+K
Sbjct: 243 GVMLRGCGIEWDLRRKQPYEVYDKLEFMTPVGVNGDCYDRYLCRIAELRESNKIIAQCVK 302
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
WL+ N GPVI +N+ I P R +KS MEDLIHHFK FTEGF VP GE+YSCVEHPKGEF
Sbjct: 303 WLKENPGPVIVDNHIIAPPKRELIKSGMEDLIHHFKFFTEGFPVPEGEVYSCVEHPKGEF 362
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+Y++SDGANKPYR+KIR+PGF HLQS EM GHMI+D VT+IGTQDIVFGEIDR
Sbjct: 363 GVYIISDGANKPYRLKIRAPGFVHLQSFDEMTRGHMIADAVTVIGTQDIVFGEIDR 418
>gi|289207896|ref|YP_003459962.1| NADH dehydrogenase I subunit D [Thioalkalivibrio sp. K90mix]
gi|288943527|gb|ADC71226.1| NADH dehydrogenase I, D subunit [Thioalkalivibrio sp. K90mix]
Length = 417
Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/415 (73%), Positives = 356/415 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI+++ LNFGPQHP+AHGVLRL+LE++GEVV++ADPHIGLLHR TEKLAE + Y QS+ Y
Sbjct: 3 EIRNFTLNFGPQHPSAHGVLRLVLEMDGEVVQRADPHIGLLHRGTEKLAESKPYNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+A+EKLL I+ P+RAQYIRVMFDEITR+LNHLMW+G+H+LDIG
Sbjct: 63 MDRLDYVSMMANEHGYVLAMEKLLQIEAPLRAQYIRVMFDEITRILNHLMWLGAHALDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+DCYEAVSGARMHA YYRPGGV RDLP MPQY+ S ++
Sbjct: 123 AMAVFLYAFREREDLMDCYEAVSGARMHATYYRPGGVARDLPGTMPQYQPSSWKSQDVVD 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN RQGSLLDFIE FT RFP +DEYETLLTDNRIWKQR VGIGVV PERA+ +GFTG
Sbjct: 183 DLNRIRQGSLLDFIEAFTERFPGCVDEYETLLTDNRIWKQRTVGIGVVDPERAMQLGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG++WDLRKKQPYE+Y+ L+FDIP+G NGD YDRYLVRIEEMRQSN+II+QC+ W
Sbjct: 243 PMLRGSGIEWDLRKKQPYEVYDRLDFDIPVGVNGDCYDRYLVRIEEMRQSNRIIRQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+ ++KIT P R MK++ME LIHHFKLFTEG +P GE Y+ VEHPKGEFG
Sbjct: 303 LRQNPGPVLLEDHKITPPKREEMKADMEALIHHFKLFTEGMCLPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG+NKPYR+K+R PGF HL +L EM GHM++DVV IIGTQDIVFGEIDR
Sbjct: 363 VYLVSDGSNKPYRLKVRPPGFVHLSALDEMARGHMLADVVAIIGTQDIVFGEIDR 417
>gi|269469171|gb|EEZ80713.1| NADH dehydrogenase I chain D [uncultured SUP05 cluster bacterium]
Length = 417
Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/415 (72%), Positives = 356/415 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y LNFGPQHPAAHGVLRLILE++GEV+ +ADPHIGLLHR TEKLAE + Y QS+ Y
Sbjct: 3 EIRNYTLNFGPQHPAAHGVLRLILEIDGEVIERADPHIGLLHRGTEKLAESKPYNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIE +L +++P RA+YIRVMFDEITR+LNHLMW+G+H LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIETMLELEVPERAKYIRVMFDEITRILNHLMWLGTHGLDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM + LYAFRERE L+DCYEAVSG+RMHA YYRPGGVYRDLP+ MPQY S R K K
Sbjct: 123 AMSIFLYAFREREKLIDCYEAVSGSRMHATYYRPGGVYRDLPDKMPQYLESDFRTEKELK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
++N NRQGSLLDFI DF FPK+I +Y+ LLTDNRIWKQRLV IG+VS RA +GFTG
Sbjct: 183 VMNANRQGSLLDFIADFVKEFPKSIKQYDDLLTDNRIWKQRLVNIGIVSANRAKQLGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV WDLRK QPY +Y+ + FDIP+G GDSYDRYLVR+EEMRQSN II QC++W
Sbjct: 243 PMLRGSGVAWDLRKNQPYAVYDKMEFDIPVGVTGDSYDRYLVRMEEMRQSNHIIDQCVEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L++N GPV+S+++K+ P R+ MK +ME LIHHFKLFTEG+ +P GE+YS +EHPKGEFG
Sbjct: 303 LQNNPGPVMSDDHKVAPPNRVEMKDDMESLIHHFKLFTEGYCLPEGEVYSAIEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YL+SDGANKPYR+KIR+PGFAHL ++ EM GHM+SDVVTIIGTQDIVFGEIDR
Sbjct: 363 VYLISDGANKPYRVKIRAPGFAHLAAMDEMARGHMLSDVVTIIGTQDIVFGEIDR 417
>gi|255019910|ref|ZP_05291985.1| NADH-ubiquinone oxidoreductase chain D [Acidithiobacillus caldus
ATCC 51756]
gi|340783283|ref|YP_004749890.1| NADH-ubiquinone oxidoreductase subunit D [Acidithiobacillus caldus
SM-1]
gi|254970690|gb|EET28177.1| NADH-ubiquinone oxidoreductase chain D [Acidithiobacillus caldus
ATCC 51756]
gi|340557434|gb|AEK59188.1| NADH-ubiquinone oxidoreductase chain D [Acidithiobacillus caldus
SM-1]
Length = 417
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/415 (73%), Positives = 355/415 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI ++ +NFGPQHP+AHGVLRL+LEL+GEV+ +ADPHIGLLHRATEKLAE +TYLQ+LPY
Sbjct: 3 EINNFTMNFGPQHPSAHGVLRLVLELDGEVIERADPHIGLLHRATEKLAEHKTYLQNLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAY A+EKLL ++IPIRAQYIR +FDEITR+LNHL+W+G+++LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYCRAVEKLLGVEIPIRAQYIRTLFDEITRILNHLLWLGAYALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LY FREREDL+D YEAVSGARMHAAYYRPGGVYRDLPE MPQY+ S R+ +
Sbjct: 123 AMSVFLYCFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPERMPQYEPSPYRDARRLA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN NRQGS+LDFIEDFT RFP +DEYETLLTDNRIWKQR VGIGVVSPERA+++GFTG
Sbjct: 183 ELNANRQGSVLDFIEDFTRRFPGYVDEYETLLTDNRIWKQRTVGIGVVSPERAIALGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLR SGV WDLR+ +PY Y L+FDIP+GK GD YDRYLVR+ EMRQSN+II QC+ W
Sbjct: 243 PMLRASGVAWDLRRSEPYAAYADLDFDIPVGKEGDCYDRYLVRVAEMRQSNRIIAQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI ++ KI P R MK++ME LIHHFKLFTEG VP GE+Y+ VE PKGEFG
Sbjct: 303 LRRNPGPVIVDDYKIAPPPRETMKTSMEALIHHFKLFTEGMAVPPGEVYAAVEAPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL ++ EM GHMI+DVV I+ T DIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRMKIRAPGFAHLAAMDEMARGHMIADVVAILATMDIVFGEIDR 417
>gi|255067284|ref|ZP_05319139.1| NADH dehydrogenase, D subunit [Neisseria sicca ATCC 29256]
gi|255048435|gb|EET43899.1| NADH dehydrogenase, D subunit [Neisseria sicca ATCC 29256]
Length = 418
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/415 (73%), Positives = 356/415 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILELEGE + +ADPHIGLLHR TEKLAE +TYLQ+LPY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELEGETIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +A+EKL I +PIRAQYIRVMF E+TR+LNHLM IGSH+ DIG
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +LYAFR+RE+L+D YEAVSGARMHAAY+RPGGVYRDLP+ MP+Y+SS RN K K
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLK 183
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE+R+G++LDFI+ F RFPKNID ETLLTDNRIWKQR VGIGVVSPERA+ GFTG
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WD+RKKQPYE+Y+ ++FDIP+G NGD YDRYL R+EEMRQS +IIKQC W
Sbjct: 244 VMLRGSGVEWDVRKKQPYEVYDQMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCADW 303
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI+ N+K P R MK+ MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 304 LRVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEFG 363
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y++SDGANKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 364 VYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|298370381|ref|ZP_06981697.1| NADH dehydrogenase (quinone), D subunit [Neisseria sp. oral taxon
014 str. F0314]
gi|298281841|gb|EFI23330.1| NADH dehydrogenase (quinone), D subunit [Neisseria sp. oral taxon
014 str. F0314]
Length = 418
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/415 (73%), Positives = 356/415 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILELEGE + +ADPHIGLLHR TEKLAE +TYLQ+LPY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELEGETIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +A+EKL I +PIRAQYIRVMF E+TR+LNHLM IGSH+ DIG
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLARIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +LYAFR+RE+L+D YEAVSGARMHAAY+RPGGVYRDLP+ MP+Y+SS RN K K
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLK 183
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE+R+G++LDFI+ F RFPKNID ETLLTDNRIWKQR VGIGVVSPERA+ GFTG
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WD+RKKQPYE+Y+ ++FDIP+G NGD YDRYL R+EEMRQS +IIKQC W
Sbjct: 244 VMLRGSGVEWDVRKKQPYEVYDQMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCADW 303
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI+ N+K P R MK+ MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 304 LRVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEFG 363
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y++SDGANKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 364 VYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|296313744|ref|ZP_06863685.1| NADH dehydrogenase, D subunit [Neisseria polysaccharea ATCC 43768]
gi|296839667|gb|EFH23605.1| NADH dehydrogenase, D subunit [Neisseria polysaccharea ATCC 43768]
Length = 418
Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/415 (72%), Positives = 357/415 (86%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILELEGE + +ADPHIGLLHR TEKLAE +TYLQ+LPY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELEGETIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +A+EKL I +PIRA+YIRVMF E+TR+LNHLM IGSH+ DIG
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRARYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +LYAFR+RE+L+D YEAVSGARMHAAY+RPGGVYRDLP+ MP+Y+SS RN K K
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLK 183
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE+R+G++LDFI+ F RFPKNID ETLLTDNRIWKQR VGIGVVSPERA+ GFTG
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WD+RK QPYE+Y+ ++FDIP+G NGD YDRYL R+EEMRQS +IIKQC+ W
Sbjct: 244 VMLRGSGVEWDVRKTQPYEVYDKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCVDW 303
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI+ N+K SP R MK+ MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 304 LRVNPGPVITTNHKFASPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEFG 363
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y++SDGANKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 364 VYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|261378537|ref|ZP_05983110.1| NADH dehydrogenase, D subunit [Neisseria cinerea ATCC 14685]
gi|269145087|gb|EEZ71505.1| NADH dehydrogenase, D subunit [Neisseria cinerea ATCC 14685]
Length = 418
Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/415 (72%), Positives = 357/415 (86%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILELEGE + +ADPHIGLLHR TEKLAE +TYLQ+LPY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELEGETIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +A+EKL I +PIRAQYIRVMF E+TR+LNHLM IGSH+ DIG
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +LYAFR+RE+L+D YEAVSGARMHAAY+RPGGVYRDLP+ MP+Y+SS RN K K
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLK 183
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE+R+G++LDFI+ F RFPKNID ETLLTDNRIWKQR VGIGVV+PERA+ GFTG
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVTPERAMQKGFTG 243
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WD+RKKQPYE+Y+ ++FDIP+G NGD YDRYL R+EEMRQS +IIKQC +W
Sbjct: 244 VMLRGSGVEWDVRKKQPYEVYDQMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSEW 303
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI+ N+K P R MK+ MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 304 LRVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEFG 363
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y++SDGANKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 364 VYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|161870820|ref|YP_001599993.1| NADH dehydrogenase subunit D [Neisseria meningitidis 053442]
gi|218534439|sp|A9M3D9.1|NUOD_NEIM0 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|161596373|gb|ABX74033.1| NADH dehydrogenase I chain D [Neisseria meningitidis 053442]
Length = 418
Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/415 (72%), Positives = 357/415 (86%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILELEGE + +ADPHIGLLHR TEKLAE +TYLQ+LPY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELEGETIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +A+EKL I +PIRAQYIRVMF E+TR+LNHLM IGSH+ DIG
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +LYAFR+RE+L+D YEAVSGARMHAAY+RPGGVYRDLP+ MP+Y+SS RN K K
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLK 183
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE+R+G++LDFI+ F RFPKNID ETLLTDNRIWKQR VGIGVV+PERA+ GFTG
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVTPERAMQKGFTG 243
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WD+RKKQPYE+Y+ ++FDIP+G NGD YDRYL R+EEMRQS +IIKQC +W
Sbjct: 244 VMLRGSGVEWDVRKKQPYEMYDKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSEW 303
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI+ N+K P R MK+ MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 304 LRVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEFG 363
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y++SDGANKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 364 VYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|121634116|ref|YP_974361.1| NADH dehydrogenase subunit D [Neisseria meningitidis FAM18]
gi|385327612|ref|YP_005881915.1| NADH dehydrogenase I subunit D [Neisseria meningitidis alpha710]
gi|385850506|ref|YP_005897021.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
M04-240196]
gi|416179748|ref|ZP_11611184.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
M6190]
gi|416181441|ref|ZP_11611635.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
M13399]
gi|416190077|ref|ZP_11615557.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
ES14902]
gi|416211695|ref|ZP_11621501.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
M01-240013]
gi|418287458|ref|ZP_12900056.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis NM233]
gi|418289712|ref|ZP_12901964.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis NM220]
gi|421553991|ref|ZP_15999942.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis 98008]
gi|421556235|ref|ZP_16002152.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis 80179]
gi|433468478|ref|ZP_20425915.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
98080]
gi|433491733|ref|ZP_20448835.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
NM586]
gi|433493840|ref|ZP_20450916.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
NM762]
gi|433495956|ref|ZP_20453005.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
M7089]
gi|433498127|ref|ZP_20455143.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
M7124]
gi|433500032|ref|ZP_20457023.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
NM174]
gi|218534431|sp|A1KRS5.1|NUOD_NEIMF RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|120865822|emb|CAM09554.1| NADH dehydrogenase I chain D [Neisseria meningitidis FAM18]
gi|308388464|gb|ADO30784.1| NADH dehydrogenase I chain D [Neisseria meningitidis alpha710]
gi|325131610|gb|EGC54317.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
M6190]
gi|325135047|gb|EGC57675.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
M13399]
gi|325139135|gb|EGC61681.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
ES14902]
gi|325145308|gb|EGC67586.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
M01-240013]
gi|325205329|gb|ADZ00782.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
M04-240196]
gi|372203074|gb|EHP16806.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis NM220]
gi|372203725|gb|EHP17337.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis NM233]
gi|402334027|gb|EJU69322.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis 98008]
gi|402338088|gb|EJU73327.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis 80179]
gi|432206564|gb|ELK62571.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
98080]
gi|432230753|gb|ELK86425.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
NM586]
gi|432232018|gb|ELK87673.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
NM762]
gi|432236894|gb|ELK92498.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
M7124]
gi|432237598|gb|ELK93191.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
M7089]
gi|432237744|gb|ELK93335.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
NM174]
Length = 418
Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/415 (72%), Positives = 356/415 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILELEGE + +ADPHIGLLHR TEKLAE +TYLQ+LPY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELEGETIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +A+EKL I +PIRAQYIRVMF E+TR+LNHLM IGSH+ DIG
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +LYAFR+RE+L+D YEAVSGARMHAAY+RPGGVYRDLP+ MP+Y+SS RN K K
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLK 183
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE+R+G++LDFI+ F RFPKNID ETLLTDNRIWKQR VGIGVVSPERA+ GFTG
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WD+RK QPYE+Y+ ++FDIP+G NGD YDRYL R+EEMRQS +IIKQC +W
Sbjct: 244 VMLRGSGVEWDVRKTQPYEVYDKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSEW 303
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI+ N+K P R MK+ MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 304 LRVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEFG 363
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y++SDGANKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 364 VYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|421562463|ref|ZP_16008290.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis NM2795]
gi|421907558|ref|ZP_16337433.1| NADH dehydrogenase I chain D [Neisseria meningitidis alpha704]
gi|393291227|emb|CCI73427.1| NADH dehydrogenase I chain D [Neisseria meningitidis alpha704]
gi|402343119|gb|EJU78274.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis NM2795]
Length = 418
Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/415 (72%), Positives = 356/415 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILELEGE + +ADPHIGLLHR TEKLAE +TYLQ+LPY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELEGETIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +A+EKL I +PIRAQYIRVMF E+TR+LNHLM IGSH+ DIG
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +LYAFR+RE+L+D YEAVSGARMHAAY+RPGGVYRDLP+ MP+Y+SS RN K K
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLK 183
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE+R+G++LDFI+ F RFPKNID ETLLTDNRIWKQR VGIGVV+PERA+ GFTG
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVTPERAMQKGFTG 243
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WD+RK QPYE+Y+ ++FDIP+G NGD YDRYL R+EEMRQS +IIKQC+ W
Sbjct: 244 VMLRGSGVEWDVRKTQPYEVYDKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCVDW 303
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI+ N+K P R MK+ MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 304 LRVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEFG 363
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y++SDGANKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 364 VYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|377555676|ref|ZP_09785404.1| NADH dehydrogenase subunit D [endosymbiont of Bathymodiolus sp.]
Length = 417
Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/415 (73%), Positives = 353/415 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y LNFGPQHPAAHGVLRLILE++GEV+ +ADPHIGLLHR TEKLAE + Y QS+ Y
Sbjct: 3 EIRNYTLNFGPQHPAAHGVLRLILEIDGEVIERADPHIGLLHRGTEKLAESKPYNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIE +L +KIP RAQYIRVMFDEITR+LNHLMW+G+H LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIETMLGLKIPERAQYIRVMFDEITRILNHLMWLGTHGLDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM + LYAFRERE L+DCYEAVSG+RMHA YYRPGGVYRDLPE MPQY + R + +
Sbjct: 123 AMSIFLYAFREREKLIDCYEAVSGSRMHATYYRPGGVYRDLPEKMPQYLKNDFRKPEELE 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+N+NRQGSLLDFI+DF FPK+I +Y+ LLTDNRIWKQRLV IG+VS RA +GFTG
Sbjct: 183 AMNKNRQGSLLDFIDDFVKEFPKSIKQYDDLLTDNRIWKQRLVNIGIVSANRAKQLGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV WDLRK QPY +Y+ L+FDIP+G GDSYDRYLVR+EEMRQSN IIKQC+ W
Sbjct: 243 PMLRGSGVAWDLRKNQPYAVYDQLDFDIPVGVTGDSYDRYLVRMEEMRQSNHIIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N G V+S++ K+ P R MK +ME LIHHFKLFTEG+ +P GE+Y +EHPKGEFG
Sbjct: 303 LRENPGSVMSDDKKVAPPKRTEMKDDMESLIHHFKLFTEGYCLPEGEVYCAIEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYL+SDGANKPYR+KIR+PGFAHL ++ EM GHM+SDVVTIIGTQDIVFGEIDR
Sbjct: 363 IYLISDGANKPYRVKIRAPGFAHLAAMDEMAKGHMLSDVVTIIGTQDIVFGEIDR 417
>gi|385339286|ref|YP_005893158.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
G2136]
gi|416200262|ref|ZP_11619577.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
961-5945]
gi|416200337|ref|ZP_11619603.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
961-5945]
gi|325143085|gb|EGC65432.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
961-5945]
gi|325143155|gb|EGC65501.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
961-5945]
gi|325197530|gb|ADY92986.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
G2136]
Length = 418
Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/415 (72%), Positives = 355/415 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILELEGE + +ADPHIGLLHR TEKLAE +TYLQ+LPY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELEGETIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +A+EKL I +PIRAQYIRVMF E+TR+LNHLM IGSH+ DIG
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +LYAFR+RE+L+D YEAVSGARMHAAY+RPGGVYRDLP+ MP+Y+ S RN K K
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYEGSKFRNAKVLK 183
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE+R+G++LDFI+ F RFPKNID ETLLTDNRIWKQR VGIGVVSPERA+ GFTG
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WD+RKKQPYE+Y ++FDIP+G NGD YDRYL R+EEMRQS +IIKQC +W
Sbjct: 244 VMLRGSGVEWDVRKKQPYEVYGKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSEW 303
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI+ N+K P R MK+ MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 304 LRVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEFG 363
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y++SDGANKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 364 VYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|421564481|ref|ZP_16010280.1| NADH dehydrogenase I chain D [Neisseria meningitidis NM3081]
gi|402346078|gb|EJU81182.1| NADH dehydrogenase I chain D [Neisseria meningitidis NM3081]
Length = 418
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/415 (72%), Positives = 358/415 (86%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILEL+GE + +ADPHIGLLHR TEKLAE +TYLQ+LPY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELDGEQIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +A+EKL+ I +PIRAQYIRVMF E+TR+LNHLM IGSH+ DIG
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLVGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +LYAFR+RE+L+D YEAVSGARMHAAY+RPGGVYRDLP+ MP+Y+SS RN K K
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLK 183
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE+R+G++LDFI+ F RFPKNID ETLLTDNRIWKQR VGIGVVSPERA+ GFTG
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WD+RKKQPYE+Y+ ++FDIP+G NGD YDRYL R+EEMRQS +IIKQC +W
Sbjct: 244 VMLRGSGVEWDVRKKQPYEVYDKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSEW 303
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI+ N+K P R MK+ MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 304 LRVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEFG 363
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y++SDGANKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 364 VYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|261364350|ref|ZP_05977233.1| NADH dehydrogenase, D subunit [Neisseria mucosa ATCC 25996]
gi|288567614|gb|EFC89174.1| NADH dehydrogenase, D subunit [Neisseria mucosa ATCC 25996]
Length = 418
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/415 (72%), Positives = 357/415 (86%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILEL+GE + +ADPHIGLLHR TEKLAE +TYLQ+LPY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELDGEQIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +A+EKL I +PIRAQYIRVMF E+TR+LNHLM IGSH+ DIG
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +LYAFR+RE+L+D YEAVSGARMHAAY+RPGGVYRDLP+ MP+Y+SS RN K +
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLQ 183
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE+R+G++LDFI+ F RFPKNID ETLLTDNRIWKQR VGIGVVSPERA+ GFTG
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WD+RKKQPYE+Y+ ++FDIP+G NGD YDRYL R+EEMRQS +IIKQC+ W
Sbjct: 244 VMLRGSGVEWDVRKKQPYEVYDQMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCVDW 303
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI+ N+K P R MK+ MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 304 LRVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEFG 363
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y++SDGANKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 364 VYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|340361176|ref|ZP_08683612.1| NADH-quinone oxidoreductase subunit D [Neisseria macacae ATCC
33926]
gi|339888918|gb|EGQ78335.1| NADH-quinone oxidoreductase subunit D [Neisseria macacae ATCC
33926]
Length = 418
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/415 (72%), Positives = 357/415 (86%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILEL+GE + +ADPHIGLLHR TEKLAE +TYLQ+LPY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELDGEQIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +A+EKL I +PIRAQYIRVMF E+TR+LNHLM IGSH+ DIG
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +LYAFR+RE+L+D YEAVSGARMHAAY+RPGGVYRDLP+ MP+Y+SS RN K K
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLK 183
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE+R+G++LDFI+ F RFPKNID ETLLTDNRIWKQR VGIGVVSPERA+ GFTG
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WD+RKKQPYE+Y+ ++FDIP+G NGD YDRYL R+EEMRQS +IIKQC +W
Sbjct: 244 VMLRGSGVEWDVRKKQPYEVYDQMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSEW 303
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI+ N+K P R MK+ MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 304 LRVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEFG 363
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y++SDGANKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 364 VYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|430762384|ref|YP_007218241.1| NADH-ubiquinone oxidoreductase chain D [Thioalkalivibrio
nitratireducens DSM 14787]
gi|430012008|gb|AGA34760.1| NADH-ubiquinone oxidoreductase chain D [Thioalkalivibrio
nitratireducens DSM 14787]
Length = 417
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/415 (73%), Positives = 356/415 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI+++ LNFGPQHP+AHGVLRL+LE++GEVV++ADPHIGLLHR TEKLAE + Y QS+ Y
Sbjct: 3 EIRNFTLNFGPQHPSAHGVLRLVLEMDGEVVQRADPHIGLLHRGTEKLAESKPYNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+A+EKLL I+ P+RAQYIRVMFDEITR+LNHL+W+G+H+LDIG
Sbjct: 63 MDRLDYVSMMSNEHGYVLAMEKLLEIEPPLRAQYIRVMFDEITRILNHLLWLGAHALDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+DCYEAVSGARMHA YYRPGGV RDLP+ MP+Y+ S +
Sbjct: 123 AMTVFLYAFREREDLMDCYEAVSGARMHATYYRPGGVARDLPDAMPKYQPSRWKTQAEVD 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN NRQGS+LDFIE FT RFP +DEYETLLTDNRIWKQR VGIGVVSP RA +G TG
Sbjct: 183 ALNANRQGSMLDFIESFTERFPGCVDEYETLLTDNRIWKQRTVGIGVVSPGRAKQLGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV+WDLR+KQPYE+Y+ L+FDIP+G NGD YDRYLVRIEEMRQSN+II+QCI W
Sbjct: 243 PMLRGSGVEWDLRRKQPYEVYDRLDFDIPVGVNGDCYDRYLVRIEEMRQSNRIIRQCIDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPV+ N KI P R MK++ME LIHHFKLFTEGF +P GE Y+ VEHPKGEFG
Sbjct: 303 LRANPGPVLLENYKIAPPRREEMKADMEALIHHFKLFTEGFCLPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDGANKPYR+K+R+PGF HL +L EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 363 VYLVSDGANKPYRLKVRAPGFVHLSALDEMARGHMLADVVAIIGTQDIVFGEVDR 417
>gi|349608695|ref|ZP_08888118.1| NADH-quinone oxidoreductase subunit D [Neisseria sp. GT4A_CT1]
gi|348611552|gb|EGY61196.1| NADH-quinone oxidoreductase subunit D [Neisseria sp. GT4A_CT1]
Length = 418
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/415 (72%), Positives = 356/415 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILEL+GE + +ADPHIGLLHR TEKLAE +TYLQ+LPY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELDGEQIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +A+EKL I +PIRAQYIRVMF E+TR+LNHLM IGSH+ DIG
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +LYAFR+RE+L+D YEAVSGARMHAAY+RPGGVYRDLP+ MP+Y+SS RN K K
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLK 183
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE+R+G++LDFI+ F RFPKNID ETLLTDNRIWKQR VGIGVVSPERA+ GFTG
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WD+RKKQPYE+Y+ ++FDIP+G NGD YDRYL R+EEMRQS +IIKQC W
Sbjct: 244 VMLRGSGVEWDVRKKQPYEVYDQMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCADW 303
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI+ N+K P R MK+ MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 304 LRVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEFG 363
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y++SDGANKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 364 VYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|389604876|emb|CCA43802.1| NADH dehydrogenase I subunit D [Neisseria meningitidis alpha522]
Length = 418
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/415 (72%), Positives = 356/415 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILELEGE + +ADPHIGLLHR TEKLAE +TYLQ+LPY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELEGETIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +A+EKL I +PIRAQYIRVMF E+TR+LNHLM IGSH+ DIG
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +LYAFR+RE+L+D YEAVSGARMHAAY+RPGGVYRDLP+ MP+Y+SS RN K K
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLK 183
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE+R+G++LDFI+ F RFPKNID ETLLTDNRIWKQR VGIGVV+PERA+ GFTG
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVTPERAMQKGFTG 243
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WD+RK QPYE+Y+ ++FDIP+G NGD YDRYL R+EEMRQS +IIKQC +W
Sbjct: 244 VMLRGSGVEWDVRKTQPYEVYDKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSEW 303
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI+ N+K P R MK+ MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 304 LRVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEFG 363
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y++SDGANKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 364 VYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|419796910|ref|ZP_14322422.1| NADH dehydrogenase subunit D [Neisseria sicca VK64]
gi|385698971|gb|EIG29296.1| NADH dehydrogenase subunit D [Neisseria sicca VK64]
Length = 418
Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/415 (72%), Positives = 356/415 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILEL+GE + +ADPHIGLLHR TEKLAE +TYLQ+LPY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELDGEQIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +A+EKL I +PIRAQYIRVMF E+TR+LNHLM IGSH+ DIG
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +LYAFR+RE+L+D YEAVSGARMHAAY+RPGGVYRDLP+ MP+Y+SS RN K K
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLK 183
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE+R+G++LDFI+ F RFPKNID ETLLTDNRIWKQR VGIGVVSPERA+ GFTG
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WD+RKKQPYE+Y+ ++FDIP+G NGD YDRYL R+EEMRQS +IIKQC W
Sbjct: 244 VMLRGSGVEWDVRKKQPYEVYDQMDFDIPVGINGDCYDRYLCRMEEMRQSVRIIKQCADW 303
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI+ N+K P R MK+ MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 304 LRVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEFG 363
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y++SDGANKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 364 VYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|89900289|ref|YP_522760.1| NADH dehydrogenase subunit D [Rhodoferax ferrireducens T118]
gi|122479523|sp|Q21YC4.1|NUOD_RHOFD RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|89345026|gb|ABD69229.1| NADH dehydrogenase I, D subunit [Rhodoferax ferrireducens T118]
Length = 417
Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/415 (73%), Positives = 363/415 (87%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +TY+Q+LPY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAETKTYIQALPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDY+SMMCNE AY +A+EK+L +++PIRA+YIRVMF EITRLLNHL+ +G+ +LD G
Sbjct: 63 MDRLDYMSMMCNESAYCLAVEKMLGLEVPIRAKYIRVMFAEITRLLNHLLCVGAGALDCG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V+LYAFREREDLLD YEAVSGARMHAAY+RPGGVYRDLP+ M +++ + IR+ K+T+
Sbjct: 123 AMTVMLYAFREREDLLDMYEAVSGARMHAAYFRPGGVYRDLPDTMARHQPNKIRSAKSTE 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN NR GSLLDFI+DFT RFP + EY TLLTDNRIWKQR VGIGVV+ ERAL++GF+G
Sbjct: 183 KLNRNRDGSLLDFIDDFTQRFPTYLGEYHTLLTDNRIWKQRTVGIGVVTAERALNLGFSG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV WDLRKKQPYEIY+ L+FDIP+GK GD YDRYLVR+EEM+QSN+IIKQC+ W
Sbjct: 243 PMLRGSGVAWDLRKKQPYEIYDRLDFDIPVGKTGDCYDRYLVRMEEMKQSNRIIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+KI P R +MKSNME+LIHHFKLF+EGF VP GE Y+ +EHPKGEFG
Sbjct: 303 LRVNPGPVITDNHKIAPPNRESMKSNMEELIHHFKLFSEGFSVPEGEAYATIEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY+VSDGANKPYR+KIR P F HL +L EM GHMI D V IIG+ DIVFGE+DR
Sbjct: 363 IYMVSDGANKPYRMKIRPPAFVHLAALGEMGRGHMIGDAVAIIGSLDIVFGEVDR 417
>gi|433466360|ref|ZP_20423823.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
87255]
gi|432205148|gb|ELK61179.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
87255]
Length = 418
Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/415 (72%), Positives = 355/415 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILELEGE + +ADPHIGLLHR TEKLAE +TYLQ+LPY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELEGETIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +A+EKL I +PIRAQYIRVMF E+TR+LNHLM IGSH+ DIG
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +LYAFR+RE+L+D YEAVSGARMHAAY+RPGGVYRDLP+ MP+Y+ S RN K K
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYEGSKFRNAKVLK 183
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE+R+G++LDFI+ F RFPKNID ETLLTDNRIWKQR VGIGVVSPERA+ GFTG
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WD+RKKQPYE+Y ++FDIP+G NGD YDRYL R+EEMRQS +IIKQC +W
Sbjct: 244 VMLRGSGVEWDVRKKQPYEVYGKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSEW 303
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI+ N+K P R MK+ MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 304 LRVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEFG 363
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y++SDGANKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 364 VYIISDGANKPYRLKIRAPGFAHLQCMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|254805714|ref|YP_003083935.1| NADH dehydrogenase subunit D [Neisseria meningitidis alpha14]
gi|421537283|ref|ZP_15983471.1| NADH dehydrogenase I chain D [Neisseria meningitidis 93003]
gi|421541583|ref|ZP_15987700.1| NADH dehydrogenase I chain D [Neisseria meningitidis NM255]
gi|421558275|ref|ZP_16004158.1| NADH dehydrogenase I chain D [Neisseria meningitidis 92045]
gi|433502087|ref|ZP_20459058.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
NM126]
gi|254669256|emb|CBA08148.1| NADH dehydrogenase I chain D [Neisseria meningitidis alpha14]
gi|254674107|emb|CBA09891.1| NADH dehydrogenase I chain D [Neisseria meningitidis alpha275]
gi|402319760|gb|EJU55265.1| NADH dehydrogenase I chain D [Neisseria meningitidis 93003]
gi|402319952|gb|EJU55456.1| NADH dehydrogenase I chain D [Neisseria meningitidis NM255]
gi|402338457|gb|EJU73690.1| NADH dehydrogenase I chain D [Neisseria meningitidis 92045]
gi|432243299|gb|ELK98811.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
NM126]
Length = 418
Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/415 (72%), Positives = 357/415 (86%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILEL+GE + +ADPHIGLLHR TEKLAE +TYLQ+LPY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELDGEQIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +A+EKL I +PIRAQYIRVMF E+TR+LNHLM IGSH+ DIG
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +LYAFR+RE+L+D YEAVSGARMHAAY+RPGGVYRDLP+ MP+Y+SS RN K K
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLK 183
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE+R+G++LDFI+ F RFPKNID ETLLTDNRIWKQR VGIGVVSPERA+ GFTG
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WD+RKKQPYE+Y+ ++FDIP+G NGD YDRYL R+EEMRQS +IIKQC +W
Sbjct: 244 VMLRGSGVEWDVRKKQPYEVYDKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSEW 303
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI+ N+K P R MK+ MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 304 LRVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEFG 363
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y++SDGANKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 364 VYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|421560399|ref|ZP_16006258.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
NM2657]
gi|254670956|emb|CBA07624.1| NADH dehydrogenase I chain D [Neisseria meningitidis alpha153]
gi|402340572|gb|EJU75772.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
NM2657]
Length = 418
Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/415 (72%), Positives = 356/415 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILEL+GE + +ADPHIGLLHR TEKLAE +TYLQ+LPY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELDGEQIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +A+EKL I +PIRAQYIRVMF E+TR+LNHLM IGSH+ DIG
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +LYAFR+RE+L+D YEAVSGARMHAAY+RPGGVYRDLP+ MP+Y+ S RN K K
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYEGSKFRNAKVLK 183
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE+R+G++LDFI+ F RFPKNID ETLLTDNRIWKQR VGIGVVSPERA+ GFTG
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WD+RKKQPYE+Y+ ++FDIP+G NGD YDRYL R+EEMRQS +IIKQC+ W
Sbjct: 244 VMLRGSGVEWDVRKKQPYEVYDKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCVDW 303
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI+ N+K P R MK+ MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 304 LRVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEFG 363
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y++SDGANKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 364 VYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|261856547|ref|YP_003263830.1| NADH dehydrogenase I subunit D [Halothiobacillus neapolitanus c2]
gi|261837016|gb|ACX96783.1| NADH dehydrogenase I, D subunit [Halothiobacillus neapolitanus c2]
Length = 417
Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/415 (73%), Positives = 359/415 (86%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI +Y LNFGPQHP+AHGVLRL+LE++GE + +ADPHIGLLHR TEKLAE + Y QS+ Y
Sbjct: 3 EIANYTLNFGPQHPSAHGVLRLVLEMDGETIIRADPHIGLLHRGTEKLAESKPYNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYV AIE+L+N++IP RAQYIRVMFDEITR+LNHL+W+G+H+LDIG
Sbjct: 63 MDRLDYVSMMCNEHAYVRAIEQLVNLEIPERAQYIRVMFDEITRILNHLLWLGAHALDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+DCYEAVSGAR+HA YYRPGGV RDLP+ MPQY+ S + + +
Sbjct: 123 AMTVFLYAFREREDLMDCYEAVSGARLHATYYRPGGVARDLPDSMPQYEKSQWHSERDVR 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE+RQGSLLDF+EDFT RFP +DEYETLLTDNRIWKQR V IG+V P+RA+++GFTG
Sbjct: 183 RMNESRQGSLLDFLEDFTQRFPGYVDEYETLLTDNRIWKQRTVDIGIVPPDRAIALGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG++WDLRKKQPY +Y+ L+FDIP+G GD YDRYLVR+EEMRQSN+II QCI W
Sbjct: 243 PMLRGSGIEWDLRKKQPYAVYDQLDFDIPVGVTGDCYDRYLVRVEEMRQSNRIITQCIDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+ +N KI P R +K++ME LIHHFKLFTEG+ +P GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVMVDNRKIAPPRREEVKADMESLIHHFKLFTEGYCLPEGETYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL +L EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLSALDEMSRGHMLADVVAIIGTQDIVFGEVDR 417
>gi|416167966|ref|ZP_11607796.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
OX99.30304]
gi|325130972|gb|EGC53699.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
OX99.30304]
Length = 418
Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/415 (72%), Positives = 356/415 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILEL+GE + +ADPHIGLLHR TEKLAE +TYLQ+LPY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELDGETIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +A+EKL I +PIRAQYIRVMF E+TR+LNHLM IGSH+ DIG
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +LYAFR+RE+L+D YEAVSGARMHAAY+RPGGVYRDLP+ MP+Y+SS RN K K
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLK 183
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE+R+G++LDFI+ F RFPKNID ETLLTDNRIWKQR VGIGVVSPERA+ GFTG
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WD+RK QPYE+Y+ ++FDIP+G NGD YDRYL R+EEMRQS +IIKQC +W
Sbjct: 244 VMLRGSGVEWDVRKTQPYEVYDKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSEW 303
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI+ N+K P R MK+ MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 304 LRVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEFG 363
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y++SDGANKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 364 VYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|319761765|ref|YP_004125702.1| NADH dehydrogenase i, d subunit [Alicycliphilus denitrificans BC]
gi|330826545|ref|YP_004389848.1| NADH dehydrogenase I subunit D [Alicycliphilus denitrificans K601]
gi|317116326|gb|ADU98814.1| NADH dehydrogenase I, D subunit [Alicycliphilus denitrificans BC]
gi|329311917|gb|AEB86332.1| NADH dehydrogenase I, D subunit [Alicycliphilus denitrificans K601]
Length = 417
Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/415 (73%), Positives = 354/415 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEVV++ADPH+GLLHRATEKLAE +TY+QSLPY
Sbjct: 3 EIKNYSLNFGPQHPAAHGVLRLVLELDGEVVQRADPHVGLLHRATEKLAEYKTYIQSLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNE AY +AIEK+L +++P+RA+YIR MF EITRLLNHLMW+GS+ +D+G
Sbjct: 63 MDRLDYVSMMCNEQAYCLAIEKMLGVEVPLRAKYIRTMFGEITRLLNHLMWLGSNGMDLG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A VL+Y FRERE L D YEAVSGARMHAAY+RPGGVYRDLP+ M Q K S +RN KA +
Sbjct: 123 ASTVLMYTFRERETLFDMYEAVSGARMHAAYFRPGGVYRDLPDTMAQLKPSKVRNAKALE 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
N NRQG LLDFI+DF +FP +DEYETLLTDNRIWKQR VGIGVVS ERAL++ +G
Sbjct: 183 EFNRNRQGGLLDFIDDFCAKFPGYVDEYETLLTDNRIWKQRTVGIGVVSAERALNLSMSG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WDLRKKQPY+ Y+ + FDIP+GKNGD YDRYLVR+EEMRQSN+IIKQC+ W
Sbjct: 243 VMLRGSGVAWDLRKKQPYDAYDRVEFDIPVGKNGDCYDRYLVRVEEMRQSNRIIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPVI +N KI P R MK+ MEDLIHHFKLF+EGF VP GE Y+ VEHPKGEFG
Sbjct: 303 LRANPGPVIVDNYKIAPPPRERMKTGMEDLIHHFKLFSEGFRVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL + E+ GHMI+D V +IGT DIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLAAYDELTRGHMIADAVAVIGTMDIVFGEIDR 417
>gi|319638817|ref|ZP_07993575.1| NADH dehydrogenase subunit I D [Neisseria mucosa C102]
gi|317399721|gb|EFV80384.1| NADH dehydrogenase subunit I D [Neisseria mucosa C102]
Length = 418
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/415 (72%), Positives = 357/415 (86%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILEL+GE + +ADPHIGLLHR TEKLAE +TYLQ+LPY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELDGEQIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +A+EKL I +PIRAQYIRVMF E+TR+LNHLM IGSH+ DIG
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +LYAFR+RE+L+D YEAVSGARMHAAY+RPGGVYRDLP+ MP+Y+SS RN K K
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLK 183
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE+R+G++LDFI+ F RFPKNID ETLLTDNRIWKQR VGIGVV+PERA+ GFTG
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVTPERAMQKGFTG 243
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WD+RKKQPYE+Y+ ++FDIP+G NGD YDRYL R+EEMRQS +IIKQC +W
Sbjct: 244 VMLRGSGVEWDVRKKQPYEVYDKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSEW 303
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI+ N+K P R MK+ MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 304 LRVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEFG 363
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y++SDGANKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 364 VYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|385323389|ref|YP_005877828.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D;
NDH-1, chain D) [Neisseria meningitidis 8013]
gi|261391776|emb|CAX49231.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D;
NDH-1, chain D) [Neisseria meningitidis 8013]
Length = 418
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/415 (72%), Positives = 354/415 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILELEGE + +ADPHIGLLHR TEKLAE +TYLQ+LPY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELEGETIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +A+EKL I +PIRAQYIRVMF E+TR+LNHLM IGSH+ DIG
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +LYAFR+RE+L+D YEAVSGARMHAAY+RPGGVYRDLP+ MP+Y+ S RN K K
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYEGSKFRNAKVLK 183
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE+R+G++LDFI+ F RFPKNID ETLLTDNRIWKQR VGIGVVSPERA+ GFTG
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WD+RK QPYE+Y ++FDIP+G NGD YDRYL R+EEMRQS +IIKQC +W
Sbjct: 244 VMLRGSGVEWDVRKTQPYEVYGKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSEW 303
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI+ N+K P R MK+ MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 304 LRVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEFG 363
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y++SDGANKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 364 VYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|304389069|ref|ZP_07371113.1| NADH-quinone oxidoreductase subunit D [Neisseria meningitidis ATCC
13091]
gi|304336942|gb|EFM03132.1| NADH-quinone oxidoreductase subunit D [Neisseria meningitidis ATCC
13091]
Length = 418
Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/415 (72%), Positives = 356/415 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILEL+GE + +ADPHIGLLHR TEKLAE +TYLQ+LPY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELDGEQIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +A+EKL+ I +PIRAQYIRVMF E+TR+LNHLM IGSH+ DIG
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLVGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +LYAFR+RE+L+D YEAVSGARMHAAY+RPGGVYRDLP+ MP+Y+SS RN K K
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLK 183
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE+R+G++LDFI+ F RFPKNID ETLLTDNRIWKQR VGIGVVSPERA+ GFTG
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WD+RKKQPYE+Y ++FDIP+G NGD YDRYL R+EEMRQS +IIKQC +W
Sbjct: 244 VMLRGSGVEWDVRKKQPYEVYGKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSEW 303
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI+ N+K P R MK+ MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 304 LRVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEFG 363
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y++SDG NKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 364 VYIISDGTNKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|218767066|ref|YP_002341578.1| NADH dehydrogenase subunit D [Neisseria meningitidis Z2491]
gi|385338859|ref|YP_005892732.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D;
NDH-1, chain D) [Neisseria meningitidis WUE 2594]
gi|385854420|ref|YP_005900933.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
M01-240355]
gi|421539440|ref|ZP_15985601.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis 93004]
gi|421543646|ref|ZP_15989737.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis NM140]
gi|421545707|ref|ZP_15991767.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis NM183]
gi|421547774|ref|ZP_15993806.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis NM2781]
gi|421551986|ref|ZP_15997967.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis NM576]
gi|433474722|ref|ZP_20432070.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
88050]
gi|433478909|ref|ZP_20436208.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
63041]
gi|433512606|ref|ZP_20469408.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
63049]
gi|433514624|ref|ZP_20471400.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
2004090]
gi|433516833|ref|ZP_20473586.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
96023]
gi|433519023|ref|ZP_20475749.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
65014]
gi|433523162|ref|ZP_20479834.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
97020]
gi|433527412|ref|ZP_20484025.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
NM3652]
gi|433529505|ref|ZP_20486104.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
NM3642]
gi|433531623|ref|ZP_20488192.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
2007056]
gi|433533742|ref|ZP_20490291.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
2001212]
gi|433540178|ref|ZP_20496635.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
63006]
gi|218534449|sp|A1INN7.1|NUOD_NEIMA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|121051074|emb|CAM07344.1| NADH dehydrogenase I chain D [Neisseria meningitidis Z2491]
gi|319411273|emb|CBY91680.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D;
NDH-1, chain D) [Neisseria meningitidis WUE 2594]
gi|325203361|gb|ADY98814.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
M01-240355]
gi|402321425|gb|EJU56899.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis 93004]
gi|402325935|gb|EJU61342.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis NM183]
gi|402326488|gb|EJU61890.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis NM140]
gi|402327794|gb|EJU63181.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis NM2781]
gi|402332902|gb|EJU68220.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis NM576]
gi|432212782|gb|ELK68717.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
88050]
gi|432218883|gb|ELK74735.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
63041]
gi|432250361|gb|ELL05756.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
63049]
gi|432256047|gb|ELL11372.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
96023]
gi|432256288|gb|ELL11611.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
2004090]
gi|432256764|gb|ELL12078.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
65014]
gi|432262618|gb|ELL17854.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
97020]
gi|432267481|gb|ELL22659.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
NM3652]
gi|432269643|gb|ELL24800.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
2007056]
gi|432269756|gb|ELL24909.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
NM3642]
gi|432274295|gb|ELL29388.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
2001212]
gi|432278159|gb|ELL33203.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
63006]
Length = 418
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/415 (72%), Positives = 356/415 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILEL+GE + +ADPHIGLLHR TEKLAE +TYLQ+LPY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELDGEQIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +A+EKL I +PIRAQYIRVMF E+TR+LNHLM IGSH+ DIG
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +LYAFR+RE+L+D YEAVSGARMHAAY+RPGGVYRDLP+ MP+Y+SS RN K K
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLK 183
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE+R+G++LDFI+ F RFPKNID ETLLTDNRIWKQR VGIGVVSPERA+ GFTG
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WD+RK QPYE+Y+ ++FDIP+G NGD YDRYL R+EEMRQS +IIKQC +W
Sbjct: 244 VMLRGSGVEWDVRKTQPYEVYDKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSEW 303
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI+ N+K P R MK+ MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 304 LRVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEFG 363
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y++SDGANKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 364 VYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|261379577|ref|ZP_05984150.1| NADH dehydrogenase, D subunit [Neisseria subflava NJ9703]
gi|284798051|gb|EFC53398.1| NADH dehydrogenase, D subunit [Neisseria subflava NJ9703]
Length = 418
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 300/415 (72%), Positives = 356/415 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILELEGE + +ADPHIGLLHR TEKLAE +TYLQ+LPY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELEGETIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +A+EKL I +PIRAQYIRVMF E+TR+LNHLM IGSH+ DIG
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +LYAFR+RE+L+D YEAVSGARMHAAY+RPGGVYRDLP+ MP+Y+SS RN K K
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLK 183
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE+R+G++LDFI+ F RFPKNID ETLLTDNRIWKQR VGIGVV+PERA+ GFTG
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVTPERAMQKGFTG 243
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WD+RK QPYE+Y+ ++FDIP+G NGD YDRYL R+EEMRQS +IIKQC +W
Sbjct: 244 VMLRGSGVEWDVRKTQPYEVYDKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSEW 303
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI+ N+K P R MK+ +EDLIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 304 LRVNPGPVITTNHKFAPPKRTEMKTGIEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEFG 363
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y++SDGANKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 364 VYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|225077019|ref|ZP_03720218.1| hypothetical protein NEIFLAOT_02071 [Neisseria flavescens
NRL30031/H210]
gi|224951576|gb|EEG32785.1| hypothetical protein NEIFLAOT_02071 [Neisseria flavescens
NRL30031/H210]
Length = 418
Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/415 (72%), Positives = 355/415 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILEL+GE + +ADPHIGLLHR TEKLAE +TYLQ+LPY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELDGEQIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +A+EKL I +PIRAQYIRVMF E+TR+LNHLM IGSH+ DIG
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +LYAFR+RE+L+D YEAVSGARMHAAY+RPGGVYRDLP+ MP+Y+SS RN K K
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLK 183
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE+R+G++LDFI+ F RFPKNID ETLLTDNRIWKQR VGIGVVSPERA+ GFTG
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WD+RK QPYE+Y+ ++FDIP+G NGD YDRYL R+EEMRQS +IIKQC W
Sbjct: 244 VMLRGSGVEWDVRKTQPYEVYDKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSDW 303
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI+ N+K P R MK+ MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 304 LRVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEFG 363
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y++SDGANKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 364 VYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|261400472|ref|ZP_05986597.1| NADH dehydrogenase, D subunit [Neisseria lactamica ATCC 23970]
gi|313669283|ref|YP_004049567.1| NADH dehydrogenase I subunit D [Neisseria lactamica 020-06]
gi|421862676|ref|ZP_16294381.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|269209731|gb|EEZ76186.1| NADH dehydrogenase, D subunit [Neisseria lactamica ATCC 23970]
gi|309379800|emb|CBX21576.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|313006745|emb|CBN88215.1| NADH dehydrogenase I chain D [Neisseria lactamica 020-06]
Length = 418
Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/415 (72%), Positives = 355/415 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILEL+GE + +ADPHIGLLHR TEKLAE +TYLQ+LPY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELDGEQIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +A+EKL I +PIRAQYIRVMF E+TR+LNHLM IGSH+ DIG
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +LYAFR+RE+L+D YEAVSGARMHAAY+RPGGVYRDLP+ MP+Y+SS RN K K
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLK 183
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE+R+G++LDFI+ F RFPKNID ETLLTDNRIWKQR VGIGVVSPERA+ GFTG
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WD+RK QPYE+Y ++FDIP+G NGD YDRYL R+EEMRQS +IIKQC +W
Sbjct: 244 VMLRGSGVEWDVRKTQPYEVYGKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSEW 303
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI+ N+K P R MK+ MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 304 LRVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEFG 363
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y++SDGANKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 364 VYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|433535900|ref|ZP_20492419.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
77221]
gi|432276321|gb|ELL31379.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
77221]
Length = 418
Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 300/415 (72%), Positives = 355/415 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILEL+GE + +ADPHIGLLHR TEKLAE +TYLQ+LPY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELDGETIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +A+EKL I +PIRAQYIRVMF E+TR+LNHLM IGSH+ DIG
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +LYAFR+RE+L+D YEAVSGARMHAAY+RPGGVYRDLP+ MP+Y+ S RN K K
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYEGSKFRNAKVLK 183
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE+R+G++LDFI+ F RFPKNID ETLLTDNRIWKQR VGIGVVSPERA+ GFTG
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WD+RK QPYE+Y+ ++FDIP+G NGD YDRYL R+EEMRQS +IIKQC +W
Sbjct: 244 VMLRGSGVEWDVRKTQPYEVYDKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSEW 303
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI+ N+K P R MK+ MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 304 LRVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEFG 363
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y++SDGANKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 364 VYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|198284343|ref|YP_002220664.1| NADH dehydrogenase subunit D [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218667952|ref|YP_002427005.1| NADH dehydrogenase subunit D [Acidithiobacillus ferrooxidans ATCC
23270]
gi|218534379|sp|B5EN68.1|NUOD_ACIF5 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|198248864|gb|ACH84457.1| NADH dehydrogenase I, D subunit [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218520165|gb|ACK80751.1| NADH-quinone oxidoreductase, D subunit [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 417
Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 297/415 (71%), Positives = 355/415 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI ++ +NFGPQHP+AHGVLRL+LEL+GEV+ +ADPHIGLLHRATEKLAE +TYLQ+LPY
Sbjct: 3 EINNFTMNFGPQHPSAHGVLRLVLELDGEVIERADPHIGLLHRATEKLAENKTYLQNLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSM+CNEHAY +A+EKLL +++P+RAQYIR +FDEITR+LNHL+W+G+++LD+G
Sbjct: 63 MDRLDYVSMLCNEHAYCLAVEKLLGVEVPVRAQYIRTLFDEITRILNHLLWLGAYALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LY FREREDL+D YEAVSGARMHAAYYRPGGVYRDLP MPQY+ S R+ + +
Sbjct: 123 AMSVFLYCFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPAQMPQYQPSPYRDARRLQ 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN NRQGS+LDFIEDF RFP +DEYETLLTDNRIWKQR VGIGVV PERA+ +GFTG
Sbjct: 183 ELNANRQGSMLDFIEDFARRFPTYVDEYETLLTDNRIWKQRTVGIGVVGPERAIQLGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLR SGV WDLR+ QPY Y L+FDIP+GK GD YDRYLVR+ EMRQSN+II QC+ W
Sbjct: 243 PMLRSSGVAWDLRRTQPYAAYADLDFDIPVGKTGDCYDRYLVRVAEMRQSNRIIVQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI+++ KI +P+R MK++ME LIHHFKLF+EG VP GE+Y+ VE PKGEFG
Sbjct: 303 LRKNPGPVITDDFKIAAPSREEMKTSMEALIHHFKLFSEGMAVPAGEVYAAVEAPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY++SDGANKPYR+KIR+PGF HL ++ EM GHMI+DVV I+ T DIVFGEIDR
Sbjct: 363 IYMISDGANKPYRMKIRAPGFPHLAAMDEMARGHMIADVVAILSTMDIVFGEIDR 417
>gi|345876271|ref|ZP_08828045.1| NADH dehydrogenase, D subunit [Neisseria weaveri LMG 5135]
gi|417957632|ref|ZP_12600552.1| NADH dehydrogenase, D subunit [Neisseria weaveri ATCC 51223]
gi|343966876|gb|EGV35128.1| NADH dehydrogenase, D subunit [Neisseria weaveri LMG 5135]
gi|343967965|gb|EGV36203.1| NADH dehydrogenase, D subunit [Neisseria weaveri ATCC 51223]
Length = 418
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/415 (72%), Positives = 356/415 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR++LEL+GE + +ADPHIGLLHR TEKLAE RTYLQ+LPY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMVLELDGETIVRADPHIGLLHRGTEKLAETRTYLQALPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +AIEKLL I IP+RA+YIR MF E+TR+LNHLM +G+H+LDIG
Sbjct: 64 MDRLDYVSMMVNEQAYCLAIEKLLGIDIPVRAKYIRTMFAEVTRILNHLMGVGAHALDIG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +LYAFR+RE+L+D YEAVSGARMHAAY+RPGGVYRDLP+ MP+Y+SS RN K K
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLK 183
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN+ R+GS+LDFI+ F RFPK IDE ETLLTDNRIWKQR VGIGVVSPERA+ GFTG
Sbjct: 184 ELNQGREGSMLDFIDHFCERFPKRIDELETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WD+RKKQPYEIY+ L+FDIP+G NGD YDRYL R+ EMRQS +I+KQC W
Sbjct: 244 VMLRGSGVEWDIRKKQPYEIYDKLDFDIPVGVNGDCYDRYLCRVNEMRQSVRIMKQCADW 303
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPVI N+K+ P R +MK MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 304 LRANPGPVIVENHKVAPPKRTDMKIGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEFG 363
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY++SDGANKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 364 IYMISDGANKPYRLKIRAPGFAHLQGIDEMSRGHMLADVVAIIGTQDIVFGEVDR 418
>gi|241760584|ref|ZP_04758676.1| NADH dehydrogenase subunit D [Neisseria flavescens SK114]
gi|241318765|gb|EER55291.1| NADH dehydrogenase subunit D [Neisseria flavescens SK114]
Length = 418
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 300/415 (72%), Positives = 356/415 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILEL+GE + +ADPHIGLLHR TEKLAE +TYLQ+LPY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELDGEQIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +A+EKL I +PIRAQYIRVMF E+TR+LNHLM IGSH+ DIG
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +LYAFR+RE+L+D YEAVSGARMHAAY+RPGGVYRDLP+ MP+Y+SS RN K K
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLK 183
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE+R+G++LDFI+ F RFPKNID ETLLTDNRIWKQR VGIGVV+PERA+ GFTG
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVTPERAMQKGFTG 243
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WD+RK QPYE+Y+ ++FDIP+G NGD YDRYL R+EEMRQS +IIKQC +W
Sbjct: 244 VMLRGSGVEWDVRKTQPYEVYDKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSEW 303
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI+ N+K P R MK+ MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 304 LRVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEFG 363
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y++SDGANKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 364 VYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|344200639|ref|YP_004784965.1| NAD(P)H-quinone oxidoreductase subunit H [Acidithiobacillus
ferrivorans SS3]
gi|343776083|gb|AEM48639.1| NAD(P)H-quinone oxidoreductase subunit H [Acidithiobacillus
ferrivorans SS3]
Length = 417
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 298/415 (71%), Positives = 355/415 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI ++ +NFGPQHP+AHGVLRL+LEL+GEV+ +ADPHIGLLHRATEKLAE +TYLQ+LPY
Sbjct: 3 EINNFTMNFGPQHPSAHGVLRLVLELDGEVIERADPHIGLLHRATEKLAENKTYLQNLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAY +A+EKLL + +P+RAQYIR +FDEITR+LNHL+W+G+++LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYCLAVEKLLGVAVPVRAQYIRTLFDEITRVLNHLLWLGAYALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LY FREREDL+D YEAVSGARMHAAYYRPGGVYRDLP MP Y+ S RN K +
Sbjct: 123 AMSVFLYCFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPAQMPLYQPSPYRNAKRLE 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN NRQGS+LDFIEDFT RFP +DEYETLLTDNRIWKQR VGIGVV PERA+ +GFTG
Sbjct: 183 ELNGNRQGSMLDFIEDFTRRFPTYVDEYETLLTDNRIWKQRTVGIGVVGPERAIQLGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLR SGV WDLR+ QPY Y L+F+IP+GK GD YDRYLVR+ EMRQSN+II QC+ W
Sbjct: 243 PMLRASGVAWDLRRTQPYAAYADLDFEIPVGKTGDCYDRYLVRVAEMRQSNQIIAQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPVI+++ K+ +P R MK++ME LIHHFKLF+EG VP GE+Y+ VE PKGEFG
Sbjct: 303 LRNNPGPVITDDFKVAAPPREEMKTSMEALIHHFKLFSEGMVVPAGEVYTAVEAPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY++SDGANKPYR+KIR+PGF+HL ++ EM GHMI+DVV I+ T DIVFGEIDR
Sbjct: 363 IYMISDGANKPYRMKIRAPGFSHLAAMDEMARGHMIADVVAILSTMDIVFGEIDR 417
>gi|160871554|ref|ZP_02061686.1| NADH dehydrogenase (quinone), d subunit [Rickettsiella grylli]
gi|159120353|gb|EDP45691.1| NADH dehydrogenase (quinone), d subunit [Rickettsiella grylli]
Length = 417
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/415 (73%), Positives = 357/415 (86%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y LNFGPQHPAAHGVLRLILEL+GEV++ AD HIGLLHRATEKLAE + Y QS+ Y
Sbjct: 3 EIRNYTLNFGPQHPAAHGVLRLILELDGEVIQSADAHIGLLHRATEKLAESKPYNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYV+AIEKLL + P RAQYIRVMFDEITR+LNHL+W+G+H+LDIG
Sbjct: 63 MDRLDYVSMMCNEHAYVLAIEKLLGVTPPKRAQYIRVMFDEITRILNHLLWLGAHALDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LY FREREDL+DCYEAVSG+RMHA YYRPGGVYRDLP+ MPQYK S N K +
Sbjct: 123 AMTVFLYCFREREDLIDCYEAVSGSRMHATYYRPGGVYRDLPDKMPQYKPSQWHNEKEIR 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+N NR+GSLLDFIE+F RFP+ IDEYETLLTDNRIWKQR VGIGV+S ERAL +G TG
Sbjct: 183 EMNANREGSLLDFIENFVTRFPQLIDEYETLLTDNRIWKQRTVGIGVLSAERALQLGCTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
P+LR SGV WDLRKKQPYE+Y+ L+FDIPIGK+GD YDRYLVR+EEMRQSN +IKQC+ W
Sbjct: 243 PILRASGVAWDLRKKQPYEVYDELDFDIPIGKHGDCYDRYLVRVEEMRQSNALIKQCVGW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPV +KI P R+ MK +ME LIHHFKLF+EG+ VP GE+Y+ +EHPKGEFG
Sbjct: 303 LRANPGPVTLKKHKIVPPTRLQMKEDMESLIHHFKLFSEGYCVPPGEVYAAIEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY+VSDGANKPYR+KIRS GF HL +L+E++SGHMI+D+V I+ + DIVFGEIDR
Sbjct: 363 IYMVSDGANKPYRVKIRSAGFPHLAALNELVSGHMIADLVAILSSLDIVFGEIDR 417
>gi|15676168|ref|NP_273300.1| NADH dehydrogenase subunit D [Neisseria meningitidis MC58]
gi|385852443|ref|YP_005898957.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
H44/76]
gi|416194955|ref|ZP_11617536.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
CU385]
gi|427826971|ref|ZP_18994016.1| NADH dehydrogenase, D subunit [Neisseria meningitidis H44/76]
gi|433464228|ref|ZP_20421722.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
NM422]
gi|433487433|ref|ZP_20444612.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
M13255]
gi|433489607|ref|ZP_20446746.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
NM418]
gi|433504140|ref|ZP_20461085.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
9506]
gi|433506288|ref|ZP_20463207.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
9757]
gi|433508334|ref|ZP_20465220.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
12888]
gi|433510505|ref|ZP_20467348.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
4119]
gi|81857626|sp|Q9K1C0.1|NUOD_NEIMB RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|7225466|gb|AAF40698.1| NADH dehydrogenase I, D subunit [Neisseria meningitidis MC58]
gi|316985172|gb|EFV64124.1| NADH dehydrogenase, D subunit [Neisseria meningitidis H44/76]
gi|325141080|gb|EGC63583.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
CU385]
gi|325199447|gb|ADY94902.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
H44/76]
gi|432206038|gb|ELK62053.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
NM422]
gi|432226198|gb|ELK81931.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
M13255]
gi|432230603|gb|ELK86278.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
NM418]
gi|432243523|gb|ELK99034.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
9506]
gi|432244304|gb|ELK99799.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
9757]
gi|432249985|gb|ELL05383.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
12888]
gi|432250573|gb|ELL05966.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
4119]
Length = 418
Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 300/415 (72%), Positives = 356/415 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILEL+GE + +ADPHIGLLHR TEKLAE +TYLQ+LPY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELDGEQIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +A+EKL+ I +PIRAQYIRVMF E+TR+LNHLM IGSH+ DIG
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLVGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +LYAFR+RE+L+D YEAVSGARMHAAY+RPGGVYRDLP+ MP+Y+ S RN K K
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYEGSKFRNAKVLK 183
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE+R+G++LDFI+ F RFPKNID ETLLTDNRIWKQR VGIGVVSPERA+ GFTG
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WD+RK QPYE+Y+ ++FDIP+G NGD YDRYL R+EEMRQS +IIKQC +W
Sbjct: 244 VMLRGSGVEWDVRKTQPYEVYDKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSEW 303
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI+ N+K P R MK+ MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 304 LRVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEFG 363
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y++SDGANKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 364 VYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|225024122|ref|ZP_03713314.1| hypothetical protein EIKCOROL_00990 [Eikenella corrodens ATCC
23834]
gi|224943147|gb|EEG24356.1| hypothetical protein EIKCOROL_00990 [Eikenella corrodens ATCC
23834]
Length = 418
Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/415 (72%), Positives = 355/415 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILELEGE + +ADPHIGLLHR TEKLAE RTYLQ+LPY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELEGETIVRADPHIGLLHRGTEKLAETRTYLQALPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +AIEKLL I IPIRA+YIR MF E+TR+LNHLM IGSH+LDIG
Sbjct: 64 MDRLDYVSMMVNEQAYCLAIEKLLGIDIPIRAKYIRTMFAEVTRILNHLMGIGSHALDIG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +LYAFR+RE+L+D YEAVSGARMHAAYYRPGGVYRDLP+ MP+Y++S RN K K
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYYRPGGVYRDLPDFMPKYEASKFRNAKVLK 183
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE R+G++LDFIE F RFP ID ETLLTDNRIWKQR VGIGVVSPERAL GFTG
Sbjct: 184 ELNEAREGTMLDFIEAFCKRFPGRIDTLETLLTDNRIWKQRTVGIGVVSPERALQKGFTG 243
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG++WD+RKK+PYE+Y+ ++FDIP+G NGD YDRYL RI EMRQS +II+QC+ W
Sbjct: 244 VMLRGSGIEWDVRKKEPYEVYDKMDFDIPVGVNGDCYDRYLCRINEMRQSVRIIQQCVDW 303
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI +++K+ P R MK+ MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 304 LRVNPGPVIVDDHKVAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEFG 363
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y++SDGANKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 364 VYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|294669095|ref|ZP_06734181.1| NADH dehydrogenase, D subunit [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291309087|gb|EFE50330.1| NADH dehydrogenase, D subunit [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 418
Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/415 (73%), Positives = 354/415 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILELEGE + +ADPHIGLLHR TEKLAE RTYLQ+LPY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELEGETIVRADPHIGLLHRGTEKLAETRTYLQALPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +AIEKLL I IPIRA+YIR MF E+TR+LNHLM IGSH+LDIG
Sbjct: 64 MDRLDYVSMMVNEQAYCLAIEKLLGIDIPIRAKYIRTMFAEVTRILNHLMGIGSHALDIG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +LYAFR+RE+L+D YEAVSGARMHAAYYRPGGVYRDLP+ MP+Y++S RN K K
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYYRPGGVYRDLPDFMPKYEASKFRNAKVLK 183
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE R+G++LDFIE F RFP ID ETLLTDNRIWKQR VGIGVVSPERAL GFTG
Sbjct: 184 ELNEAREGTMLDFIEAFCQRFPGRIDTLETLLTDNRIWKQRTVGIGVVSPERALQKGFTG 243
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG++WD+RKKQPYE+Y+ ++FDIP+G NGD YDRYL RI EMRQS +II+QC+ W
Sbjct: 244 VMLRGSGIEWDVRKKQPYEVYDKMDFDIPVGVNGDCYDRYLCRINEMRQSVRIIQQCVDW 303
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI +++K+ P R MK MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 304 LRVNPGPVIVDDHKVAPPKRTEMKFGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEFG 363
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y++SDGANKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 364 VYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|385342721|ref|YP_005896592.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
M01-240149]
gi|385856386|ref|YP_005902898.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
NZ-05/33]
gi|416186272|ref|ZP_11613633.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
M0579]
gi|421568426|ref|ZP_16014149.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis NM3001]
gi|325137071|gb|EGC59667.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
M0579]
gi|325202927|gb|ADY98381.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
M01-240149]
gi|325207275|gb|ADZ02727.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
NZ-05/33]
gi|402341368|gb|EJU76547.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis NM3001]
Length = 418
Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 300/415 (72%), Positives = 355/415 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILEL+GE + +ADPHIGLLHR TEKLAE +TYLQ+LPY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELDGEQIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +A+EKL I +PIRAQYIRVMF E+TR+LNHLM IGSH+ DIG
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +LYAFR+RE+L+D YEAVSGARMHAAY+RPGGVYRDLP+ MP+Y+ S RN K K
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYEGSKFRNAKVLK 183
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE+R+G++LDFI+ F RFPKNID ETLLTDNRIWKQR VGIGVVSPERA+ GFTG
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WD+RK QPYE+Y+ ++FDIP+G NGD YDRYL R+EEMRQS +IIKQC +W
Sbjct: 244 VMLRGSGVEWDVRKTQPYEVYDKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSEW 303
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI+ N+K P R MK+ MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 304 LRVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEFG 363
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y++SDGANKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 364 VYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|59802069|ref|YP_208781.1| NADH dehydrogenase subunit D [Neisseria gonorrhoeae FA 1090]
gi|194099644|ref|YP_002002775.1| NADH dehydrogenase subunit D [Neisseria gonorrhoeae NCCP11945]
gi|240015000|ref|ZP_04721913.1| NADH dehydrogenase subunit D [Neisseria gonorrhoeae DGI18]
gi|240017448|ref|ZP_04723988.1| NADH dehydrogenase subunit D [Neisseria gonorrhoeae FA6140]
gi|240122069|ref|ZP_04735031.1| NADH dehydrogenase subunit D [Neisseria gonorrhoeae PID24-1]
gi|254494624|ref|ZP_05107795.1| NADH dehydrogenase subunit I D [Neisseria gonorrhoeae 1291]
gi|268595651|ref|ZP_06129818.1| NADH-quinone oxidoreductase subunit D [Neisseria gonorrhoeae 35/02]
gi|268597683|ref|ZP_06131850.1| NADH-quinone oxidoreductase subunit D [Neisseria gonorrhoeae FA19]
gi|268599935|ref|ZP_06134102.1| NADH dehydrogenase subunit I D [Neisseria gonorrhoeae MS11]
gi|268602269|ref|ZP_06136436.1| NADH dehydrogenase subunit I D [Neisseria gonorrhoeae PID18]
gi|268604535|ref|ZP_06138702.1| NADH dehydrogenase subunit I D [Neisseria gonorrhoeae PID1]
gi|268682990|ref|ZP_06149852.1| NADH dehydrogenase subunit I D [Neisseria gonorrhoeae PID332]
gi|268685155|ref|ZP_06152017.1| NADH dehydrogenase subunit I D [Neisseria gonorrhoeae SK-92-679]
gi|268687418|ref|ZP_06154280.1| NADH dehydrogenase subunit I D [Neisseria gonorrhoeae SK-93-1035]
gi|291042880|ref|ZP_06568621.1| NADH-quinone oxidoreductase subunit D [Neisseria gonorrhoeae DGI2]
gi|293398109|ref|ZP_06642314.1| NADH dehydrogenase (quinone), D subunit [Neisseria gonorrhoeae F62]
gi|385336586|ref|YP_005890533.1| NADH dehydrogenase subunit D [Neisseria gonorrhoeae TCDC-NG08107]
gi|75355478|sp|Q5F618.1|NUOD_NEIG1 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|218534444|sp|B4RPI1.1|NUOD_NEIG2 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|59718964|gb|AAW90369.1| putative NADH dehydrogenase I chain D [Neisseria gonorrhoeae FA
1090]
gi|193934934|gb|ACF30758.1| NADH dehydrogenase delta subunit [Neisseria gonorrhoeae NCCP11945]
gi|226513664|gb|EEH63009.1| NADH dehydrogenase subunit I D [Neisseria gonorrhoeae 1291]
gi|268549040|gb|EEZ44458.1| NADH-quinone oxidoreductase subunit D [Neisseria gonorrhoeae 35/02]
gi|268551471|gb|EEZ46490.1| NADH-quinone oxidoreductase subunit D [Neisseria gonorrhoeae FA19]
gi|268584066|gb|EEZ48742.1| NADH dehydrogenase subunit I D [Neisseria gonorrhoeae MS11]
gi|268586400|gb|EEZ51076.1| NADH dehydrogenase subunit I D [Neisseria gonorrhoeae PID18]
gi|268588666|gb|EEZ53342.1| NADH dehydrogenase subunit I D [Neisseria gonorrhoeae PID1]
gi|268623274|gb|EEZ55674.1| NADH dehydrogenase subunit I D [Neisseria gonorrhoeae PID332]
gi|268625439|gb|EEZ57839.1| NADH dehydrogenase subunit I D [Neisseria gonorrhoeae SK-92-679]
gi|268627702|gb|EEZ60102.1| NADH dehydrogenase subunit I D [Neisseria gonorrhoeae SK-93-1035]
gi|291013314|gb|EFE05280.1| NADH-quinone oxidoreductase subunit D [Neisseria gonorrhoeae DGI2]
gi|291611372|gb|EFF40442.1| NADH dehydrogenase (quinone), D subunit [Neisseria gonorrhoeae F62]
gi|317165129|gb|ADV08670.1| NADH dehydrogenase subunit D [Neisseria gonorrhoeae TCDC-NG08107]
Length = 418
Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/415 (72%), Positives = 354/415 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILEL+GE + +ADPHIGLLHR TEKLAE +TYLQ+LPY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELDGEQIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +A+EKL I +PIRAQYIRVMF E+TR+LNHLM IGSH+ DIG
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +LYAFR+RE+L+D YEAVSGARMHAAY+RPGGVYRDLP MP+Y+SS RN K K
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPGFMPKYESSKFRNAKVLK 183
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE+R+G++LDFI+ F RFPKNID ETLLTDNRIWKQR VGIGVVSPERA+ GFTG
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WD+RK QPYE+Y+ ++FDIP+G NGD YDRYL R+EEMRQS +IIKQC W
Sbjct: 244 VMLRGSGVEWDVRKTQPYEVYDKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCADW 303
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI+ N+K P R MK+ MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 304 LRVNPGPVITANHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEFG 363
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y++SDGANKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 364 VYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|416159332|ref|ZP_11605796.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
N1568]
gi|433472627|ref|ZP_20429997.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
97021]
gi|433481051|ref|ZP_20438323.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
2006087]
gi|433483173|ref|ZP_20440411.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
2002038]
gi|433485274|ref|ZP_20442480.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
97014]
gi|325129042|gb|EGC51892.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
N1568]
gi|432212511|gb|ELK68449.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
97021]
gi|432219404|gb|ELK75251.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
2006087]
gi|432223619|gb|ELK79399.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
2002038]
gi|432224734|gb|ELK80497.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
97014]
Length = 418
Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 300/415 (72%), Positives = 355/415 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILEL+GE + +ADPHIGLLHR TEKLAE +TYLQ+LPY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELDGEQIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +A+EKL I +PIRAQYIRVMF E+TR+LNHLM IGSH+ DIG
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +LYAFR+RE+L+D YEAVSGARMHAAY+RPGGVYRDLP+ MP+Y+SS RN K K
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLK 183
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE+R+G++LDFI+ F RFPKNID ETLL DNRIWKQR VGIGVVSPERA+ GFTG
Sbjct: 184 QLNESREGTMLDFIDAFCERFPKNIDTLETLLNDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WD+RK QPYE+Y+ ++FDIP+G NGD YDRYL R+EEMRQS +IIKQC +W
Sbjct: 244 VMLRGSGVEWDVRKTQPYEVYDKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSEW 303
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI+ N+K P R MK+ MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 304 LRVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEFG 363
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y++SDGANKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 364 VYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|421549803|ref|ZP_15995813.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis 69166]
gi|433470421|ref|ZP_20427821.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
68094]
gi|433476822|ref|ZP_20434150.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
70012]
gi|433521032|ref|ZP_20477733.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
61103]
gi|433525273|ref|ZP_20481919.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
69096]
gi|433538006|ref|ZP_20494493.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
70030]
gi|402331754|gb|EJU67086.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis 69166]
gi|432211854|gb|ELK67798.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
68094]
gi|432217975|gb|ELK73840.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
70012]
gi|432262498|gb|ELL17736.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
61103]
gi|432263421|gb|ELL18641.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
69096]
gi|432276146|gb|ELL31208.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
70030]
Length = 418
Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 300/415 (72%), Positives = 354/415 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILEL+GE + +ADPHIGLLHR TEKLAE +TYLQ+LPY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELDGEQIVRADPHIGLLHRGTEKLAETKTYLQALPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +A+EKL I +PIRAQYIRVMF E+TR+LNHLM IGSH+ DIG
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +LYAFR+RE+L+D YEAVSGARMHAAY+RPGGVYRDLP+ MP+Y+ S RN K K
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYEGSKFRNAKVLK 183
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE+R+G++LDFI+ F RFPKNID ETLLTDNRIWKQR VGIGVVSPERA+ GFTG
Sbjct: 184 QLNESREGTMLDFIDVFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WD+RK QPYE+Y+ ++FDIP+G NGD YDRYL R+EEMRQS +IIKQC W
Sbjct: 244 VMLRGSGVEWDVRKTQPYEVYDKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCADW 303
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI+ N+K P R MK+ MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 304 LRVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEFG 363
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y++SDGANKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 364 VYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|386815639|ref|ZP_10102857.1| NADH dehydrogenase subunit D [Thiothrix nivea DSM 5205]
gi|386420215|gb|EIJ34050.1| NADH dehydrogenase subunit D [Thiothrix nivea DSM 5205]
Length = 417
Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 299/415 (72%), Positives = 353/415 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI+++ LNFGP HPAAHGVLRL+LE++GE + +ADPHIGLLHR TEKLAE + Y QS+ Y
Sbjct: 3 EIRNFTLNFGPAHPAAHGVLRLVLEMDGETIVRADPHIGLLHRGTEKLAESKPYNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEH YV+AIEKLL I P RA YIR +FDE+TR+LNHL+WIG+H+LD+G
Sbjct: 63 MDRLDYVSMMCNEHGYVLAIEKLLGITAPERALYIRTLFDEVTRILNHLLWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM + LYAFREREDL+D YEAVSGAR+HA YYRPGGVYRDLP+ MPQ++S+ R+ K
Sbjct: 123 AMTMFLYAFREREDLMDAYEAVSGARLHATYYRPGGVYRDLPDSMPQFQSNRFRSEAEAK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN NR GSLLDF+EDFTNRFP +DEYETLLTDNRIWKQRLVGIGVVSPERAL +GF+G
Sbjct: 183 RLNANRGGSLLDFLEDFTNRFPGYVDEYETLLTDNRIWKQRLVGIGVVSPERALQLGFSG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG++WDLRKKQPY Y+ ++FDIP+G GDSYDRYLVR+EEMRQSN+IIKQCI W
Sbjct: 243 PMLRGSGIEWDLRKKQPYAAYDKMDFDIPVGVQGDSYDRYLVRVEEMRQSNRIIKQCIAW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+ ++K+ P R +MK +ME LI HFKL TEG+ +P GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVMLEDSKVAPPKRTDMKEDMEALIQHFKLMTEGYCLPAGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
Y+VSDGANKPYR+KIR+PGFAHL + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 363 CYIVSDGANKPYRLKIRAPGFAHLSGMDEMSKGHMLADVVAIIGTQDIVFGEVDR 417
>gi|264677201|ref|YP_003277107.1| NADH dehydrogenase I subunit D [Comamonas testosteroni CNB-2]
gi|418530547|ref|ZP_13096470.1| NADH dehydrogenase subunit D [Comamonas testosteroni ATCC 11996]
gi|262207713|gb|ACY31811.1| NADH dehydrogenase I, D subunit [Comamonas testosteroni CNB-2]
gi|371452266|gb|EHN65295.1| NADH dehydrogenase subunit D [Comamonas testosteroni ATCC 11996]
Length = 417
Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 299/415 (72%), Positives = 359/415 (86%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEVV++ADPHIGLLHRATEKLAE +TY+QSLPY
Sbjct: 3 EIKNYSLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRATEKLAESKTYIQSLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDY SMM NEHAY +AIEKL+ I++PIRAQYIRVMF EITR++NHLMW+GS D G
Sbjct: 63 MDRLDYCSMMSNEHAYCLAIEKLMGIEVPIRAQYIRVMFSEITRIMNHLMWLGSSGNDAG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+ +L+Y+FRERE L+D YEAVSGARMHAAY+RPGGVYRDLP+ MPQYK+S +RN ++ +
Sbjct: 123 SSTILIYSFREREALMDMYEAVSGARMHAAYFRPGGVYRDLPDSMPQYKASKVRNVRSME 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE+R+GSLLDFI+ FT RFPK DEYETLLTDNRIWKQR VGIGVVS ERA+++G TG
Sbjct: 183 AMNEDRKGSLLDFIDAFTQRFPKCADEYETLLTDNRIWKQRNVGIGVVSAERAINLGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLR SG+ WD+RK QPYE+Y+ L+FDIP+G GD YDRYLVR+ EMR+SNKIIKQC+ W
Sbjct: 243 PMLRASGLPWDMRKTQPYEVYDKLDFDIPVGATGDCYDRYLVRMAEMRESNKIIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+K+ +R MKSNME+LIHHFKLFTEGF VP GE Y+ VEHPKGEFG
Sbjct: 303 LRVNPGPVITDNHKVAPASREAMKSNMEELIHHFKLFTEGFKVPEGEAYASVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYL+SDGANKPYR+KIR PGFAH+ +L E+ GHM++D V ++ T DIVFG++DR
Sbjct: 363 IYLISDGANKPYRLKIRPPGFAHMAALDELSRGHMLADAVMVLSTLDIVFGDVDR 417
>gi|221068609|ref|ZP_03544714.1| NADH dehydrogenase I, D subunit [Comamonas testosteroni KF-1]
gi|220713632|gb|EED69000.1| NADH dehydrogenase I, D subunit [Comamonas testosteroni KF-1]
Length = 417
Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 298/415 (71%), Positives = 359/415 (86%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEVV++ADPHIGLLHRATEKLAE +TY+QSLPY
Sbjct: 3 EIKNYSLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRATEKLAESKTYIQSLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDY SMM NEHAY +AIEKL+ I++PIRAQYIRVMF EITR++NHLMW+GS D G
Sbjct: 63 MDRLDYCSMMSNEHAYCLAIEKLMGIEVPIRAQYIRVMFSEITRIMNHLMWLGSSGNDAG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+ +L+Y+FRERE L+D YEAVSGARMHAAY+RPGGVYRDLP+ MPQYK+S +RN ++ +
Sbjct: 123 SSTILIYSFREREALMDMYEAVSGARMHAAYFRPGGVYRDLPDSMPQYKASKVRNVRSME 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE+R+GS+LDFI+ FT RFPK DEYETLLTDNRIWKQR VGIGVVS ERA+++G TG
Sbjct: 183 AMNEDRKGSMLDFIDAFTQRFPKCADEYETLLTDNRIWKQRNVGIGVVSAERAINLGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLR SG+ WD+RK QPYE+Y+ L+FDIP+G GD YDRYLVR+ EMR+SNKIIKQC+ W
Sbjct: 243 PMLRASGLPWDMRKTQPYEVYDKLDFDIPVGATGDCYDRYLVRMAEMRESNKIIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+K+ +R MKSNME+LIHHFKLFTEGF VP GE Y+ VEHPKGEFG
Sbjct: 303 LRVNPGPVITDNHKVAPASREAMKSNMEELIHHFKLFTEGFKVPEGEAYASVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYL+SDGANKPYR+KIR PGFAH+ +L E+ GHM++D V ++ T DIVFG++DR
Sbjct: 363 IYLISDGANKPYRLKIRPPGFAHMAALDELSRGHMLADAVMVLSTLDIVFGDVDR 417
>gi|381402243|ref|ZP_09927117.1| NADH dehydrogenase subunit D [Kingella kingae PYKK081]
gi|380832773|gb|EIC12667.1| NADH dehydrogenase subunit D [Kingella kingae PYKK081]
Length = 418
Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/416 (72%), Positives = 357/416 (85%), Gaps = 1/416 (0%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILELEGE + +ADPHIGLLHR TEKLAE +TYLQ+LPY
Sbjct: 3 KLRNYTINFGPQHPAAHGVLRMILELEGETIVRADPHIGLLHRGTEKLAETKTYLQALPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY MAIEKL+ I++PIRA+YIR MF E+TR+LNHLM +GSH+LDIG
Sbjct: 63 MDRLDYVSMMVNEQAYCMAIEKLVGIEVPIRAKYIRTMFAEVTRILNHLMGVGSHALDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +LYAFR+RE+L+D YEAVSGARMHAAY+RPGGVYRDLP+ MP+Y+SS RN K K
Sbjct: 123 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKYRNAKVLK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN +R+G++LDFI+ F RFPKNID ETLLTDNRIWKQR VGIGVVSPERAL GFTG
Sbjct: 183 ELNSSREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERALQKGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG++WD+RKKQPYE+Y+ ++FDIP+G NGD YDRYL R+ EMRQS +IIKQC W
Sbjct: 243 VMLRGSGIEWDVRKKQPYEVYDQIDFDIPVGVNGDCYDRYLCRMAEMRQSVRIIKQCADW 302
Query: 579 LRSNKG-PVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
LR+N PVI+ N+K+ P R +MK MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEF
Sbjct: 303 LRANPNLPVITENHKVAPPKRTDMKIGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEF 362
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
GIY++SDGANKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 363 GIYMISDGANKPYRLKIRAPGFAHLQGMDEMARGHMLADVVAIIGTQDIVFGEVDR 418
>gi|270158111|ref|ZP_06186768.1| NADH dehydrogenase (quinone) D subunit [Legionella longbeachae
D-4968]
gi|289163624|ref|YP_003453762.1| NADH dehydrogenase I chain D [Legionella longbeachae NSW150]
gi|269990136|gb|EEZ96390.1| NADH dehydrogenase (quinone) D subunit [Legionella longbeachae
D-4968]
gi|288856797|emb|CBJ10608.1| NADH dehydrogenase I chain D [Legionella longbeachae NSW150]
Length = 417
Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/417 (72%), Positives = 359/417 (86%)
Query: 277 VIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSL 336
+IE+K+Y LNFGPQHPAAHGVLRL+LELEGE + +ADPHIGLLHRATEKLAE + Y+Q++
Sbjct: 1 MIELKNYTLNFGPQHPAAHGVLRLVLELEGETIIRADPHIGLLHRATEKLAETKPYIQTI 60
Query: 337 PYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLD 396
YMDRLDYVSMMCNEHAYV AIEKLL I+IP+RAQYIR MFDE+TR+LNHL+W+G+ +LD
Sbjct: 61 GYMDRLDYVSMMCNEHAYVRAIEKLLGIEIPLRAQYIRTMFDEVTRILNHLLWLGAIALD 120
Query: 397 IGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKA 456
IGAM V LY FREREDL DCYEAVSGARMHA YYRPGGV RDLP+ MP+Y++S N++
Sbjct: 121 IGAMTVFLYCFREREDLFDCYEAVSGARMHATYYRPGGVARDLPDAMPKYQTSKWHNDRE 180
Query: 457 TKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGF 516
+ LNE+R GSLLDF+ FT RFP+ +DEYETLLTDNRIWKQR V IG+VSPE AL GF
Sbjct: 181 VEKLNEDRNGSLLDFLWAFTERFPRCVDEYETLLTDNRIWKQRTVDIGIVSPEDALQWGF 240
Query: 517 TGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCI 576
TGPMLRGSG+ WDLRKKQ Y Y+ ++FDIP+GK GD YDRYLVR+EE+RQSN+II+QCI
Sbjct: 241 TGPMLRGSGIAWDLRKKQSYAAYDRVDFDIPVGKTGDCYDRYLVRVEELRQSNRIIRQCI 300
Query: 577 KWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
+WL++N GPV +++K+T P R+ MK++ME+LIHHFKLFTEGF +P GE+YS VE PKGE
Sbjct: 301 EWLKANPGPVRVDDHKVTPPRRVEMKADMEELIHHFKLFTEGFCLPAGEVYSAVEAPKGE 360
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FGIY+VSDGANKPYR+KIR+PGFAHL S EM GHMI+D V I+ +QDIVFGEIDR
Sbjct: 361 FGIYMVSDGANKPYRMKIRAPGFAHLSSFDEMSRGHMIADGVAILASQDIVFGEIDR 417
>gi|374622764|ref|ZP_09695285.1| NADH dehydrogenase subunit D [Ectothiorhodospira sp. PHS-1]
gi|373941886|gb|EHQ52431.1| NADH dehydrogenase subunit D [Ectothiorhodospira sp. PHS-1]
Length = 417
Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 299/415 (72%), Positives = 358/415 (86%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y LNFGPQHPAAHGVLRL+LE++GEVV++ADPHIGLLHR TEKLAE + + QS+ Y
Sbjct: 3 EIRNYTLNFGPQHPAAHGVLRLVLEMDGEVVQRADPHIGLLHRGTEKLAESKPFNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDY+SMM NEH YV AIE+L+ I+ P+RAQYIRVMFDEITR+LNHL+W+G+H+LD+G
Sbjct: 63 MDRLDYMSMMVNEHGYVKAIERLMGIEPPLRAQYIRVMFDEITRILNHLLWLGTHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM + LY FREREDL+DCYEAVSG+RMHA YYRPGGV+RDLP M QY+ S ++ K
Sbjct: 123 AMTMFLYCFREREDLIDCYEAVSGSRMHATYYRPGGVHRDLPGTMAQYEPSRWKSATDVK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE+R GSLLDFIEDFT RFP +DEYETLLTDNRIWKQR VGIGVVSPERAL G TG
Sbjct: 183 RLNESRSGSLLDFIEDFTRRFPTCVDEYETLLTDNRIWKQRTVGIGVVSPERALQTGMTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV WDLRKKQPY +Y+ ++FDIP+G NGDSYDRYLVRIEEMRQSN+II+QC++W
Sbjct: 243 PMLRGSGVAWDLRKKQPYAVYDRMDFDIPVGVNGDSYDRYLVRIEEMRQSNRIIRQCVEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L++N GPV+ +++K+ P R MK++ME LIHHFKLFTEG+ VP GE+YS VEHPKGEF
Sbjct: 303 LKTNPGPVMIDDHKVAPPPREEMKADMESLIHHFKLFTEGYCVPEGEVYSAVEHPKGEFA 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YL+SDGANKPYR+K+R PGF HL +L EM GHM++DVVT+IG+ DIVFGEIDR
Sbjct: 363 VYLISDGANKPYRVKVRPPGFVHLSALDEMSRGHMLADVVTLIGSLDIVFGEIDR 417
>gi|404379857|ref|ZP_10984906.1| NADH-quinone oxidoreductase subunit D [Simonsiella muelleri ATCC
29453]
gi|294484373|gb|EFG32056.1| NADH-quinone oxidoreductase subunit D [Simonsiella muelleri ATCC
29453]
Length = 418
Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/416 (72%), Positives = 356/416 (85%), Gaps = 1/416 (0%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILELEGE + +ADPHIGLLHR TEKLAE +TYLQ+LPY
Sbjct: 3 KLRNYTINFGPQHPAAHGVLRMILELEGETIVRADPHIGLLHRGTEKLAETKTYLQALPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY MAIEKL+ I++PIRA+YIR MF E+TR+LNHLM +GSH+LDIG
Sbjct: 63 MDRLDYVSMMVNEQAYCMAIEKLVGIEVPIRAKYIRTMFAEVTRILNHLMGVGSHALDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +LYAFR+RE+L+D YEAVSGARMHAAY+RPGGVYRDLP+ MP+Y+SS RN K K
Sbjct: 123 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKYRNAKVLK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN +R+G++LDFI+ F RFPKNID ETLLTDNRIWKQR VGIGVVSPERAL GFTG
Sbjct: 183 ELNASREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERALQKGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WD+RKKQPYE+Y+ ++FDIP+G NGD YDRYL R+ EMRQS +IIKQC W
Sbjct: 243 VMLRGSGVEWDIRKKQPYEVYDQIDFDIPVGVNGDCYDRYLCRMAEMRQSVRIIKQCADW 302
Query: 579 LRSNKG-PVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
LR+N PVI N+K+ P R +MK MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEF
Sbjct: 303 LRANPNLPVIVENHKVAPPKRTDMKIGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEF 362
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
GIY++SDGANKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 363 GIYMISDGANKPYRLKIRAPGFAHLQGMDEMARGHMLADVVAIIGTQDIVFGEVDR 418
>gi|299530745|ref|ZP_07044160.1| NADH dehydrogenase subunit D [Comamonas testosteroni S44]
gi|298721261|gb|EFI62203.1| NADH dehydrogenase subunit D [Comamonas testosteroni S44]
Length = 417
Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 298/415 (71%), Positives = 359/415 (86%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEVV++ADPHIGLLHRATEKLAE +TY+QSLPY
Sbjct: 3 EIKNYSLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRATEKLAESKTYIQSLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDY SMM NEHAY +AIEKL+ I++PIRAQYIRVMF EITR++NHLMW+GS D G
Sbjct: 63 MDRLDYCSMMSNEHAYCLAIEKLMGIEVPIRAQYIRVMFSEITRIMNHLMWLGSSGNDAG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+ +L+Y+FRERE L+D YEAVSGARMHAAY+RPGGVYRDLP+ MPQYK+S +RN ++ +
Sbjct: 123 SSTILIYSFREREALMDMYEAVSGARMHAAYFRPGGVYRDLPDSMPQYKASKVRNVRSME 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE+R+GSLLDFI+ FT RFPK DEYETLLTDNRIWKQR VGIGVVS ERA+++G TG
Sbjct: 183 AMNEDRKGSLLDFIDAFTQRFPKCADEYETLLTDNRIWKQRNVGIGVVSAERAINLGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLR SG+ WD+RK QPYE+Y+ L+FDIP+G GD YDRYLVR+ EMR+SNKIIKQC+ W
Sbjct: 243 PMLRASGMPWDMRKTQPYEVYDKLDFDIPVGATGDCYDRYLVRMAEMRESNKIIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+K+ +R MKS+ME+LIHHFKLFTEGF VP GE Y+ VEHPKGEFG
Sbjct: 303 LRVNPGPVITDNHKVAPASREAMKSSMEELIHHFKLFTEGFKVPEGEAYASVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYL+SDGANKPYR+KIR PGFAH+ +L E+ GHM++D V ++ T DIVFG++DR
Sbjct: 363 IYLISDGANKPYRLKIRPPGFAHMAALDELSRGHMLADAVMVLSTLDIVFGDVDR 417
>gi|333376390|ref|ZP_08468173.1| NADH-quinone oxidoreductase subunit D [Kingella kingae ATCC 23330]
gi|332968232|gb|EGK07309.1| NADH-quinone oxidoreductase subunit D [Kingella kingae ATCC 23330]
Length = 418
Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 300/416 (72%), Positives = 357/416 (85%), Gaps = 1/416 (0%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILELEGE + +ADPHIGLLHR TEKLAE +TYLQ+LPY
Sbjct: 3 KLRNYTINFGPQHPAAHGVLRMILELEGETIVRADPHIGLLHRGTEKLAETKTYLQTLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY MAIEKL+ I++PIRA+YIR MF E+TR+LNHLM +GSH+LDIG
Sbjct: 63 MDRLDYVSMMVNEQAYCMAIEKLVGIEVPIRAKYIRTMFAEVTRILNHLMGVGSHALDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +LYAFR+RE+L+D YEAVSGARMHAAY+RPGGVYRDLP+ MP+Y+SS RN K K
Sbjct: 123 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKYRNAKVLK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN +R+G++LDFI+ F RFP+NID ETLLTDNRIWKQR VGIGVVSPERAL GFTG
Sbjct: 183 ELNASREGTMLDFIDAFCERFPRNIDTLETLLTDNRIWKQRTVGIGVVSPERALQKGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG++WD+RKKQPYE+Y+ ++FDIP+G NGD YDRYL R+ EMRQS +IIKQC W
Sbjct: 243 VMLRGSGIEWDVRKKQPYEVYDQIDFDIPVGVNGDCYDRYLCRMAEMRQSVRIIKQCADW 302
Query: 579 LRSNKG-PVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
LR+N PVI+ N+K+ P R +MK MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEF
Sbjct: 303 LRANPNLPVITENHKVAPPKRTDMKIGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEF 362
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
GIY++SDGANKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 363 GIYMISDGANKPYRLKIRAPGFAHLQGMDEMARGHMLADVVAIIGTQDIVFGEVDR 418
>gi|388455139|ref|ZP_10137434.1| NADH dehydrogenase subunit D [Fluoribacter dumoffii Tex-KL]
Length = 417
Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/417 (73%), Positives = 351/417 (84%)
Query: 277 VIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSL 336
+IE+K+Y LNFGPQHPAAHGVLRL+LELEGE + +ADPHIGLLHRATEKLAE + YLQS+
Sbjct: 1 MIELKNYTLNFGPQHPAAHGVLRLVLELEGETIVRADPHIGLLHRATEKLAETKPYLQSI 60
Query: 337 PYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLD 396
YMDRLDYVSMMCNEHAYV AIEKLL I+ PIRAQYIR MFDE+TR+LNHL+W+G+ +LD
Sbjct: 61 GYMDRLDYVSMMCNEHAYVRAIEKLLGIEAPIRAQYIRTMFDEVTRILNHLLWLGAIALD 120
Query: 397 IGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKA 456
IGAM V LY FREREDL DCYEAVSGARMHA YYRPGGV RDLP+ MPQY++S N +
Sbjct: 121 IGAMTVFLYCFREREDLFDCYEAVSGARMHATYYRPGGVARDLPDSMPQYQASRWHNERE 180
Query: 457 TKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGF 516
+ LNE+R GSLLDF+ FT RFP +DEYETLLTDNRIWKQR V IGVVSPE AL GF
Sbjct: 181 VEKLNEHRNGSLLDFLWAFTERFPHCVDEYETLLTDNRIWKQRTVDIGVVSPEEALQWGF 240
Query: 517 TGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCI 576
TGPMLRGSGV WDLRKKQ Y Y+ + FDIP+GK GD YDRYLVR+EE+RQSN+II+QCI
Sbjct: 241 TGPMLRGSGVAWDLRKKQSYAAYDQVEFDIPVGKTGDCYDRYLVRVEELRQSNRIIRQCI 300
Query: 577 KWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
+WLR+N GPV ++KIT P R+ MK +ME LIHHFKLFTEGF +P GE+YS VE PKGE
Sbjct: 301 EWLRANPGPVRIEDHKITPPRRVVMKEDMESLIHHFKLFTEGFCLPRGEVYSAVEAPKGE 360
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FGIY+VSDGANKPYR+KIR+PGFAHL S M GHMI+D V I+ +QDIVFGEIDR
Sbjct: 361 FGIYMVSDGANKPYRLKIRAPGFAHLSSYDAMTRGHMIADGVAILASQDIVFGEIDR 417
>gi|406941972|gb|EKD74327.1| hypothetical protein ACD_45C00004G0017 [uncultured bacterium]
Length = 420
Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 297/415 (71%), Positives = 356/415 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y NFGPQHPAAHGVLRLILE++GE + +ADPH+GLLHRATEKLAE + Y ++ Y
Sbjct: 6 EIRNYTFNFGPQHPAAHGVLRLILEVDGETIVRADPHVGLLHRATEKLAESKPYNHTIGY 65
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEH YV+AIEKLL I+ P+RA YIR +FDEITR+LNHL+W+G+H LDIG
Sbjct: 66 MDRLDYVSMMCNEHGYVLAIEKLLGIEPPVRALYIRTLFDEITRILNHLLWLGAHGLDIG 125
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ + LY FRERE+LLDCYEAVSG RMHA YYRPGGVYRDLP MPQY++S N K
Sbjct: 126 ALSIFLYCFREREELLDCYEAVSGTRMHATYYRPGGVYRDLPAHMPQYRTSRWHNEKEVA 185
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNENRQGSLLDFI DFT RFP+ I+EYETLLTDNRIWKQR V IGV+SPERA+++G TG
Sbjct: 186 TLNENRQGSLLDFIWDFTERFPERINEYETLLTDNRIWKQRTVDIGVISPERAIALGLTG 245
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV+WDLRKKQPY +Y+ ++FDIP+G NGD YDRYLVRIEEMRQ+N+II+QC++W
Sbjct: 246 PMLRGSGVEWDLRKKQPYAMYDQVDFDIPVGVNGDCYDRYLVRIEEMRQANRIIRQCVEW 305
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVIS+++KIT P R++MK +ME LIHHFKL TEGF +P GE Y+ +EHPKGEFG
Sbjct: 306 LRHNPGPVISDHHKITPPTRVDMKKDMESLIHHFKLMTEGFCLPEGEAYAAIEHPKGEFG 365
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDGANKPYR+KIR+ GF HL +L E++ GHMI+DVV ++ + DIVFGEIDR
Sbjct: 366 VYLVSDGANKPYRLKIRAAGFPHLAALEELVRGHMIADVVAVLSSLDIVFGEIDR 420
>gi|238023162|ref|ZP_04603588.1| hypothetical protein GCWU000324_03088 [Kingella oralis ATCC 51147]
gi|237865545|gb|EEP66685.1| hypothetical protein GCWU000324_03088 [Kingella oralis ATCC 51147]
Length = 418
Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 299/416 (71%), Positives = 357/416 (85%), Gaps = 1/416 (0%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILELEGE + +ADPHIGLLHR TEKLAE +TYLQ+LPY
Sbjct: 3 KLRNYTINFGPQHPAAHGVLRMILELEGETIVRADPHIGLLHRGTEKLAETKTYLQALPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNE AY +AIEKLL I++PIRA+YIR MF E+TR+LNHLM +GSH+LDIG
Sbjct: 63 MDRLDYVSMMCNEQAYCLAIEKLLGIEVPIRAKYIRTMFAEVTRILNHLMGVGSHALDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +LYAFR+RE+L+D YEAVSGARMHAAY+R GGVYRDLP+ MP+Y++S R+ K K
Sbjct: 123 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRVGGVYRDLPDFMPKYEASKYRSAKVLK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN +R+GS+LDFI+ F RFPKNID ETLLTDNRIWKQR VGIGVVSPERAL GFTG
Sbjct: 183 ELNASREGSMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERALQKGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WD+RKKQPYE+Y+ ++FDIP+G NGD YDRYL R+ EMRQS +IIKQC W
Sbjct: 243 VMLRGSGVEWDVRKKQPYEMYHEMDFDIPVGVNGDCYDRYLCRMAEMRQSVRIIKQCADW 302
Query: 579 LRSNKG-PVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
LR+N PVI++N+K+ P R MK MEDLIHHFKLFTEG +VP GE Y+ +EHPKGEF
Sbjct: 303 LRANPNLPVITDNHKVAPPKRTEMKMGMEDLIHHFKLFTEGMHVPEGETYTAIEHPKGEF 362
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+Y++SDGANKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 363 GVYIISDGANKPYRLKIRAPGFAHLQGMDEMARGHMLADVVAIIGTQDIVFGEVDR 418
>gi|374263777|ref|ZP_09622324.1| NADH dehydrogenase I, D subunit [Legionella drancourtii LLAP12]
gi|363535899|gb|EHL29346.1| NADH dehydrogenase I, D subunit [Legionella drancourtii LLAP12]
Length = 417
Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/417 (72%), Positives = 356/417 (85%)
Query: 277 VIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSL 336
+IE+K+Y LNFGPQHPAAHGVLRL+LELEGE + +ADPHIGLLHRATEKLAE + Y+Q++
Sbjct: 1 MIELKNYTLNFGPQHPAAHGVLRLVLELEGETIVRADPHIGLLHRATEKLAETKPYIQNI 60
Query: 337 PYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLD 396
YMDRLDYVSMMCNEHAYV AIEKLL I++P+RAQYIR MFDE+TR+LNHL+W+G+ +LD
Sbjct: 61 GYMDRLDYVSMMCNEHAYVNAIEKLLGIEVPVRAQYIRTMFDEVTRILNHLLWLGAIALD 120
Query: 397 IGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKA 456
IGAM V LY FREREDL DCYEAVSGARMHA YYRPGGV RDLP+ M QYK+S + +
Sbjct: 121 IGAMTVFLYCFREREDLFDCYEAVSGARMHATYYRPGGVARDLPDTMAQYKASRWHSERE 180
Query: 457 TKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGF 516
+ LNE+R GSLLDF+ FT RFP+ +DEYETLLTDNRIWKQR V IGVVSPE AL GF
Sbjct: 181 VEKLNEDRCGSLLDFLWAFTERFPRCVDEYETLLTDNRIWKQRTVDIGVVSPEEALQWGF 240
Query: 517 TGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCI 576
TGPMLRGSG+ WDLRKKQ Y Y+ ++FDIP+GK GD YDRYLVR+EE+RQSN+II+QCI
Sbjct: 241 TGPMLRGSGIAWDLRKKQSYAAYDKVDFDIPVGKTGDCYDRYLVRVEELRQSNRIIRQCI 300
Query: 577 KWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
+WLR+N GPV +++KIT P R+ MK +ME LIHHFKLFTEGF +P GE+YS VE PKGE
Sbjct: 301 EWLRNNPGPVRVDDHKITPPRRVEMKHDMEALIHHFKLFTEGFCLPRGEVYSAVEAPKGE 360
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FGIY+VSDGANKPYR+KIR+PGFAHL S EM+ GHM++D V I+ +QDIVFGEIDR
Sbjct: 361 FGIYMVSDGANKPYRLKIRAPGFAHLSSYDEMVRGHMLADGVAILASQDIVFGEIDR 417
>gi|329118901|ref|ZP_08247596.1| NADH-quinone oxidoreductase subunit D [Neisseria bacilliformis ATCC
BAA-1200]
gi|327464929|gb|EGF11219.1| NADH-quinone oxidoreductase subunit D [Neisseria bacilliformis ATCC
BAA-1200]
Length = 418
Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 297/415 (71%), Positives = 352/415 (84%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILELEGE + +ADPHIGLLHR TEKLAE RTYLQ+LPY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELEGETIVRADPHIGLLHRGTEKLAETRTYLQNLPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +A+EKLL I IPIRA+YIR MF E+TR+LNHLM IGSH+LDIG
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLLGIDIPIRAKYIRTMFAEVTRILNHLMGIGSHALDIG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +LYAFR+RE+L+D YEAVSGARMHAAY+RPGGVYRDLP+ MP+Y++S RN K K
Sbjct: 124 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYEASKFRNAKVLK 183
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE R+G++LDFI+ F RFP ID ETLLTDNRIWKQR VGIGVVSPERA+ GFTG
Sbjct: 184 ELNEAREGTMLDFIDAFCQRFPSRIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG++WD+RK QPYE+Y+ ++FDIP+G NGD YDRYL RI EMRQS +II+QC W
Sbjct: 244 VMLRGSGIEWDVRKTQPYEVYDQMDFDIPVGLNGDCYDRYLCRINEMRQSVRIIQQCSDW 303
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L+ N GPVI+ ++K+ P R MK MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 304 LKHNPGPVITGDHKVAPPKRTEMKMGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEFG 363
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y++SDGANKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 364 VYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|344337379|ref|ZP_08768313.1| NAD(P)H-quinone oxidoreductase subunit H [Thiocapsa marina 5811]
gi|343802332|gb|EGV20272.1| NAD(P)H-quinone oxidoreductase subunit H [Thiocapsa marina 5811]
Length = 418
Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/416 (72%), Positives = 352/416 (84%), Gaps = 1/416 (0%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y LNFGPQHP+AHGVLRL+LE++GEV+ +ADPHIGLLHRATEKLAE + + QS+ Y
Sbjct: 3 EIRNYTLNFGPQHPSAHGVLRLVLEMDGEVIERADPHIGLLHRATEKLAESKPFNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEH YV AIEKLL ++ P RAQYIR MFDEITR+LNHLMW+ +H LDIG
Sbjct: 63 MDRLDYVSMMCNEHGYVRAIEKLLGVEAPERAQYIRTMFDEITRILNHLMWLAAHGLDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYK-SSIIRNNKAT 457
AM V LY FREREDLLDCYEAVSGARMHA YYRPGGVYRDLP+ MPQY SS + K
Sbjct: 123 AMTVFLYCFREREDLLDCYEAVSGARMHATYYRPGGVYRDLPDRMPQYSGSSKWHSAKTI 182
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
N RQGSLLDFIEDF +RFP ++DEYETLLTDNRIWKQR VGIGVVSPERAL +GFT
Sbjct: 183 AKRNGPRQGSLLDFIEDFADRFPGHVDEYETLLTDNRIWKQRTVGIGVVSPERALQLGFT 242
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GPMLRGSGV+WDLRKKQPY Y+ ++FDIP+G NGD YDRYLVR+EEMRQSN+I+KQC++
Sbjct: 243 GPMLRGSGVEWDLRKKQPYAAYDKMDFDIPVGVNGDCYDRYLVRMEEMRQSNRIVKQCVQ 302
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
WLR N GPV ++K+ P+R +MK +ME LIHHFKLFTEG+ P GE+Y+ VE PKGEF
Sbjct: 303 WLRDNPGPVAIEDHKVMPPSRADMKDDMEALIHHFKLFTEGYCPPPGEVYAAVEAPKGEF 362
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G Y+VSDGANKPYR+K+R+PGF HL +L EM GHM++DVV IIGT D+VFGEIDR
Sbjct: 363 GCYIVSDGANKPYRLKVRAPGFPHLAALDEMSQGHMLADVVAIIGTLDVVFGEIDR 418
>gi|390952117|ref|YP_006415876.1| NADH dehydrogenase subunit D [Thiocystis violascens DSM 198]
gi|390428686|gb|AFL75751.1| NADH dehydrogenase subunit D [Thiocystis violascens DSM 198]
Length = 418
Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/416 (72%), Positives = 353/416 (84%), Gaps = 1/416 (0%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y LNFGPQHP+AHGVLRL+LE++GEV+ +ADPHIGLLHR TEKLAE + Y QS+ Y
Sbjct: 3 EIRNYTLNFGPQHPSAHGVLRLVLEMDGEVIERADPHIGLLHRGTEKLAESKPYNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEH YV AIEKLL ++ P+RAQYIR +FDEITR+LNHLMW+G+H LDIG
Sbjct: 63 MDRLDYVSMMCNEHGYVRAIEKLLGVEAPVRAQYIRTLFDEITRILNHLMWLGAHGLDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYK-SSIIRNNKAT 457
AM + LY FREREDLLDCYEAVSGAR+HA YYRPGGVYRDLP+ MPQY+ SS + K
Sbjct: 123 AMSIFLYCFREREDLLDCYEAVSGARLHATYYRPGGVYRDLPDRMPQYQGSSKWHSAKTI 182
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
N+ RQGSLLDFI+DF +RFP ++DEYETLLTDNRIWKQR VGIGVVSPERAL +GFT
Sbjct: 183 AKRNDARQGSLLDFIDDFADRFPAHVDEYETLLTDNRIWKQRTVGIGVVSPERALQLGFT 242
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GPMLRGSGV+WDLRKKQPY Y ++FDIP+G NGD YDRYLVR+EEMRQSN+IIKQC++
Sbjct: 243 GPMLRGSGVEWDLRKKQPYAAYGEVDFDIPVGVNGDCYDRYLVRMEEMRQSNRIIKQCVQ 302
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
WLR N GPV +++K+ P R +K +ME LIHHFKLFTEG+ P GE+Y+ VE PKGEF
Sbjct: 303 WLRDNPGPVAIDDHKVMPPRRAAVKDDMESLIHHFKLFTEGYCTPPGEVYAAVEAPKGEF 362
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G Y+VSDGANKPYR+K+R+PGF HL +L EM GHM++DVV IIGT DIVFGEIDR
Sbjct: 363 GCYIVSDGANKPYRLKVRAPGFPHLAALDEMSRGHMLADVVAIIGTLDIVFGEIDR 418
>gi|429744982|ref|ZP_19278437.1| NADH dehydrogenase subunit D [Neisseria sp. oral taxon 020 str.
F0370]
gi|429161641|gb|EKY04023.1| NADH dehydrogenase subunit D [Neisseria sp. oral taxon 020 str.
F0370]
Length = 418
Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 299/415 (72%), Positives = 352/415 (84%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILEL+GE + +ADPHIGLLHR TEKLAE RT+LQ+LPY
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILELDGETIVRADPHIGLLHRGTEKLAETRTFLQTLPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +A+EKLL I IPIRA+YIR MF E+TR+LNHLM +GSH+LDIG
Sbjct: 64 MDRLDYVSMMVNEQAYCLAVEKLLGIDIPIRAKYIRTMFAEVTRILNHLMGVGSHALDIG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +LYAFR+REDL+D YEAVSGARMHAAY+RPGGVYRDLP+ MP+Y+ S R+ K K
Sbjct: 124 AMTAILYAFRDREDLMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYEPSKYRSAKVLK 183
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN R+GS+LDFI+ F RFP ID+ ETLLTDNRIWKQR VGIGVVSPERA+ GFTG
Sbjct: 184 ELNAWREGSMLDFIDAFCERFPSRIDDLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTG 243
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WD+RK QPYE+Y+ ++FDIP+G NGD YDRYL RI EMRQS +IIKQC W
Sbjct: 244 VMLRGSGVEWDVRKTQPYEVYDQMDFDIPVGVNGDCYDRYLCRINEMRQSTRIIKQCADW 303
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++++K+ P R MK MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 304 LRVNPGPVITDDHKVAPPKRTEMKLGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEFG 363
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYL+SDGANKPYR+KIR+PGFAHLQ + EM GHM++DVV IIGTQDIVFGE+DR
Sbjct: 364 IYLISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|54298769|ref|YP_125138.1| NADH dehydrogenase subunit D [Legionella pneumophila str. Paris]
gi|148361099|ref|YP_001252306.1| NADH dehydrogenase I subunit D [Legionella pneumophila str. Corby]
gi|296108429|ref|YP_003620130.1| NADH dehydrogenase I subunit D [Legionella pneumophila 2300/99
Alcoy]
gi|397668457|ref|YP_006509994.1| NADH dehydrogenase subunit D [Legionella pneumophila subsp.
pneumophila]
gi|81679376|sp|Q5X1B0.1|NUOD_LEGPA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|229891401|sp|A5IHW0.1|NUOD_LEGPC RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|53752554|emb|CAH13986.1| NADH dehydrogenase I chain D [Legionella pneumophila str. Paris]
gi|148282872|gb|ABQ56960.1| NADH dehydrogenase I, D subunit [Legionella pneumophila str. Corby]
gi|295650331|gb|ADG26178.1| NADH dehydrogenase I chain D [Legionella pneumophila 2300/99 Alcoy]
gi|395131868|emb|CCD10161.1| NADH dehydrogenase subunit D [Legionella pneumophila subsp.
pneumophila]
Length = 417
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/417 (72%), Positives = 353/417 (84%)
Query: 277 VIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSL 336
+IE+K+Y LNFGPQHPAAHGVLRL+LELEGE + +ADPHIGLLHRATEKLAE + Y+QS+
Sbjct: 1 MIELKNYTLNFGPQHPAAHGVLRLVLELEGETIVRADPHIGLLHRATEKLAETKPYIQSI 60
Query: 337 PYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLD 396
YMDRLDYVSMMCNEHAYVMAIEKLL I+ P+RA+YIR MFDE+TR+LNHL+W+G+ +LD
Sbjct: 61 GYMDRLDYVSMMCNEHAYVMAIEKLLGIEPPLRAKYIRTMFDEVTRILNHLLWLGATALD 120
Query: 397 IGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKA 456
IGAM V LY FREREDL DCYEAVSGARMHA YYRPGGV RDLP+ MPQYK S N +
Sbjct: 121 IGAMTVFLYCFREREDLFDCYEAVSGARMHATYYRPGGVARDLPDTMPQYKPSRWHNERE 180
Query: 457 TKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGF 516
+ N NRQGSLLDF+ FT RFP+ +DEYETLLTDNRIWKQR V IG+VSPE AL GF
Sbjct: 181 IEKKNHNRQGSLLDFLWAFTERFPRCVDEYETLLTDNRIWKQRTVDIGIVSPENALQWGF 240
Query: 517 TGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCI 576
TGPMLRGSG+ WDLRKKQ Y Y+ ++FDIP+GK GD YDRYLVR+EE+RQSN+II+QCI
Sbjct: 241 TGPMLRGSGIAWDLRKKQSYAAYDRVDFDIPVGKTGDCYDRYLVRVEELRQSNRIIRQCI 300
Query: 577 KWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
+WLR + GPV ++ K+T P R+ MK +ME LIHHFKLFTEGF +P GE+YS VE PKGE
Sbjct: 301 EWLRKHPGPVKVDDYKVTPPRRVVMKHDMEALIHHFKLFTEGFCLPRGEVYSSVEAPKGE 360
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FGIY+VSDGANKPYR+KIR+PGFAHL S +M+ GHM++D V I+ +QDIVFGEIDR
Sbjct: 361 FGIYMVSDGANKPYRLKIRAPGFAHLSSFDDMVRGHMLADGVAILASQDIVFGEIDR 417
>gi|406914577|gb|EKD53743.1| hypothetical protein ACD_60C00158G0006 [uncultured bacterium]
Length = 420
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 292/415 (70%), Positives = 355/415 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I++Y NFGPQHPAAHGVLRLILE++GE + +ADPH+GLLHRATEKLAE + Y ++ Y
Sbjct: 6 QIQNYTFNFGPQHPAAHGVLRLILEVDGETIVRADPHVGLLHRATEKLAETKPYNHTIGY 65
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEH YV+AIEKLL ++ PIRA+YIR +FDEITR+LNHL+W+G+H+LDIG
Sbjct: 66 MDRLDYVSMMCNEHGYVLAIEKLLGVQAPIRARYIRTLFDEITRILNHLLWLGAHALDIG 125
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM + LY FRERE+LLDCYEAVSG+RMHA YYRPGGVYRDLP MPQYK S N K
Sbjct: 126 AMSMFLYCFREREELLDCYEAVSGSRMHATYYRPGGVYRDLPGKMPQYKPSRWHNEKEVA 185
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN+NRQGSLLDFI DFT RFP +DEYETLLTDNRIWKQR V IG++SPERA+++GFTG
Sbjct: 186 ELNKNRQGSLLDFIWDFTERFPHRVDEYETLLTDNRIWKQRTVDIGIISPERAIALGFTG 245
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV WDLRKKQPY Y ++FDIP+G GD YDRYLVR+EEMRQ+N+II+QC++W
Sbjct: 246 PMLRGSGVAWDLRKKQPYAAYEHVDFDIPVGTRGDCYDRYLVRVEEMRQANRIIRQCVEW 305
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+S+++KI P R++MK +ME LIHHFKL TEG+ +P+GE Y+ +EHPKGEFG
Sbjct: 306 LRKNPGPVMSDHHKIAPPTRVDMKKDMESLIHHFKLMTEGYCLPVGEAYAAIEHPKGEFG 365
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDGANKPYR+KIR+ GF HL +L E++ GHMI+DVV+++ + DIVFGEIDR
Sbjct: 366 VYLVSDGANKPYRLKIRAAGFPHLAALEELVRGHMIADVVSVLSSLDIVFGEIDR 420
>gi|344342323|ref|ZP_08773194.1| NAD(P)H-quinone oxidoreductase subunit H [Marichromatium purpuratum
984]
gi|343805659|gb|EGV23554.1| NAD(P)H-quinone oxidoreductase subunit H [Marichromatium purpuratum
984]
Length = 419
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/417 (72%), Positives = 356/417 (85%), Gaps = 2/417 (0%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHP+AHGVLRL+LEL+GEV+++ADPH+GLLHRATEKLAE + Y QS+ Y
Sbjct: 3 EIRNYTINFGPQHPSAHGVLRLVLELDGEVIQRADPHVGLLHRATEKLAESKPYNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEH YV AIE+LL +++P RAQYIR M+DEITR+LNHLMW+ +H+LDIG
Sbjct: 63 MDRLDYVSMMCNEHGYVRAIEQLLGVEVPERAQYIRTMYDEITRILNHLMWLAAHALDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LY FREREDL DCYEAVSGARMHA YYRPGGV RDLPE MPQ+ + + + A +
Sbjct: 123 AMSVFLYCFREREDLFDCYEAVSGARMHATYYRPGGVNRDLPERMPQFDKAGSKWHGAKE 182
Query: 459 IL--NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGF 516
+ N NRQGSLLDF+EDFT RFPK++DEYETLLTDNRIWKQR VGIGVVSPERA ++GF
Sbjct: 183 MTRRNANRQGSLLDFLEDFTERFPKHVDEYETLLTDNRIWKQRTVGIGVVSPERAQALGF 242
Query: 517 TGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCI 576
TGPMLRGSG+ WDLRKKQPY Y+ ++FDIPIG NGD YDRYLVR+EEMRQSN+II+QCI
Sbjct: 243 TGPMLRGSGIAWDLRKKQPYAAYDKVDFDIPIGVNGDCYDRYLVRMEEMRQSNRIIRQCI 302
Query: 577 KWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
WLR+N GPV ++ K+ +P+R MK +ME LIHHFKLF+EG+ P GE+Y+ VE PKGE
Sbjct: 303 DWLRANPGPVRIDDAKVIAPSRERMKEDMEALIHHFKLFSEGYCTPPGEVYAAVEAPKGE 362
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG Y+VSDGANKPYR+KIR+PGF HL +L EM GHMI+DVV IIGT DIVFGEIDR
Sbjct: 363 FGCYIVSDGANKPYRLKIRAPGFPHLAALDEMSRGHMIADVVAIIGTLDIVFGEIDR 419
>gi|52842984|ref|YP_096783.1| NADH dehydrogenase subunit D [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|378778669|ref|YP_005187111.1| NADH dehydrogenase I subunit D [Legionella pneumophila subsp.
pneumophila ATCC 43290]
gi|52630095|gb|AAU28836.1| NADH dehydrogenase I, D subunit [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|364509487|gb|AEW53011.1| NADH dehydrogenase I, D subunit [Legionella pneumophila subsp.
pneumophila ATCC 43290]
Length = 422
Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/417 (72%), Positives = 352/417 (84%)
Query: 277 VIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSL 336
+IE+K+Y LNFGPQHPAAHGVLRL+LELEGE + +ADPHIGLLHRATEKLAE + Y+QS+
Sbjct: 6 MIELKNYTLNFGPQHPAAHGVLRLVLELEGETIVRADPHIGLLHRATEKLAETKPYIQSI 65
Query: 337 PYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLD 396
YMDRLDYVSMMCNEHAYVMAIEKLL I+ P+RA+YIR MFDE+TR+LNHL+W+G+ +LD
Sbjct: 66 GYMDRLDYVSMMCNEHAYVMAIEKLLGIEPPLRAKYIRTMFDEVTRILNHLLWLGATALD 125
Query: 397 IGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKA 456
IGAM V LY FREREDL DCYEAVSGARMHA YYRPGGV RDLP+ MPQYK S + +
Sbjct: 126 IGAMTVFLYCFREREDLFDCYEAVSGARMHATYYRPGGVARDLPDTMPQYKPSRWHSERE 185
Query: 457 TKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGF 516
+ N NRQGSLLDF+ DFT RFP +DEYETLLTDNRIWKQR V IGVVSPE AL GF
Sbjct: 186 IEKKNHNRQGSLLDFLWDFTERFPHCVDEYETLLTDNRIWKQRTVDIGVVSPENALQWGF 245
Query: 517 TGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCI 576
TGPMLRGSG+ WDLRKKQ Y Y+ + FDIP+GK GD YDRYLVR+EE+RQSN+II+QCI
Sbjct: 246 TGPMLRGSGIAWDLRKKQSYAAYDRVEFDIPVGKTGDCYDRYLVRVEELRQSNRIIRQCI 305
Query: 577 KWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
+WLR + GPV ++ K++ P R+ MK +ME LIHHFKLFTEGF +P GE+YS VE PKGE
Sbjct: 306 EWLRKHPGPVKVDDYKVSPPRRVVMKHDMEALIHHFKLFTEGFCLPRGEVYSSVEAPKGE 365
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FGIY+VSDGANKPYR+KIR+PGFAHL S +M+ GHM++D V I+ +QDIVFGEIDR
Sbjct: 366 FGIYMVSDGANKPYRLKIRAPGFAHLSSFDDMVRGHMLADGVAILASQDIVFGEIDR 422
>gi|54295615|ref|YP_128030.1| NADH dehydrogenase subunit D [Legionella pneumophila str. Lens]
gi|397665379|ref|YP_006506917.1| NADH dehydrogenase subunit D [Legionella pneumophila subsp.
pneumophila]
gi|81679123|sp|Q5WT23.1|NUOD_LEGPL RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|229891493|sp|Q5ZRU1.2|NUOD_LEGPH RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|53755447|emb|CAH16943.1| NADH dehydrogenase I chain D [Legionella pneumophila str. Lens]
gi|307611655|emb|CBX01346.1| NADH dehydrogenase I chain D [Legionella pneumophila 130b]
gi|395128790|emb|CCD07010.1| NADH dehydrogenase subunit D [Legionella pneumophila subsp.
pneumophila]
Length = 417
Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/417 (72%), Positives = 352/417 (84%)
Query: 277 VIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSL 336
+IE+K+Y LNFGPQHPAAHGVLRL+LELEGE + +ADPHIGLLHRATEKLAE + Y+QS+
Sbjct: 1 MIELKNYTLNFGPQHPAAHGVLRLVLELEGETIVRADPHIGLLHRATEKLAETKPYIQSI 60
Query: 337 PYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLD 396
YMDRLDYVSMMCNEHAYVMAIEKLL I+ P+RA+YIR MFDE+TR+LNHL+W+G+ +LD
Sbjct: 61 GYMDRLDYVSMMCNEHAYVMAIEKLLGIEPPLRAKYIRTMFDEVTRILNHLLWLGATALD 120
Query: 397 IGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKA 456
IGAM V LY FREREDL DCYEAVSGARMHA YYRPGGV RDLP+ MPQYK S + +
Sbjct: 121 IGAMTVFLYCFREREDLFDCYEAVSGARMHATYYRPGGVARDLPDTMPQYKPSRWHSERE 180
Query: 457 TKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGF 516
+ N NRQGSLLDF+ DFT RFP +DEYETLLTDNRIWKQR V IGVVSPE AL GF
Sbjct: 181 IEKKNHNRQGSLLDFLWDFTERFPHCVDEYETLLTDNRIWKQRTVDIGVVSPENALQWGF 240
Query: 517 TGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCI 576
TGPMLRGSG+ WDLRKKQ Y Y+ + FDIP+GK GD YDRYLVR+EE+RQSN+II+QCI
Sbjct: 241 TGPMLRGSGIAWDLRKKQSYAAYDRVEFDIPVGKTGDCYDRYLVRVEELRQSNRIIRQCI 300
Query: 577 KWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
+WLR + GPV ++ K++ P R+ MK +ME LIHHFKLFTEGF +P GE+YS VE PKGE
Sbjct: 301 EWLRKHPGPVKVDDYKVSPPRRVVMKHDMEALIHHFKLFTEGFCLPRGEVYSSVEAPKGE 360
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FGIY+VSDGANKPYR+KIR+PGFAHL S +M+ GHM++D V I+ +QDIVFGEIDR
Sbjct: 361 FGIYMVSDGANKPYRLKIRAPGFAHLSSFDDMVRGHMLADGVAILASQDIVFGEIDR 417
>gi|325267317|ref|ZP_08133979.1| NADH-quinone oxidoreductase subunit D [Kingella denitrificans ATCC
33394]
gi|324981254|gb|EGC16904.1| NADH-quinone oxidoreductase subunit D [Kingella denitrificans ATCC
33394]
Length = 418
Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 296/416 (71%), Positives = 356/416 (85%), Gaps = 1/416 (0%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++Y +NFGPQHPAAHGVLR+ILEL+GE + +ADPHIGLLHR TEKLAE +TYLQ+LPY
Sbjct: 3 KLRNYTINFGPQHPAAHGVLRMILELDGEQIVRADPHIGLLHRGTEKLAETKTYLQALPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +A+EKLL ++IPIRA+YIR MF E+TR+LNHLM +GSH+LDIG
Sbjct: 63 MDRLDYVSMMVNEQAYCLAVEKLLGLEIPIRAKYIRTMFAEVTRILNHLMGVGSHALDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +LYAFR+RE+L+D YEAVSGARMHAAY+R GGVYRDLP+ MP+Y+ S R+ K K
Sbjct: 123 AMTAILYAFRDREELMDLYEAVSGARMHAAYFRIGGVYRDLPDFMPKYEKSKFRSAKVLK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN +R+G++LDFI+ F RFPKNID ETLLTDNRIWKQR VGIGVVSPERAL GFTG
Sbjct: 183 ELNASREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERALQKGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WD+RKKQPYE+Y+ ++FDIP+G NGD YDRYL R+ EMRQS +IIKQC W
Sbjct: 243 VMLRGSGVEWDVRKKQPYEVYDQIDFDIPVGVNGDCYDRYLCRMAEMRQSVRIIKQCADW 302
Query: 579 LRSNKG-PVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
LR+N G PVI++N+K+ P R MK MEDLIHHFKLFTEG +VP GE Y+ VEHPKGEF
Sbjct: 303 LRANPGLPVITDNHKVAPPKRTEMKQGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEF 362
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+Y++SDGANKPYR+KIR+PGFAHLQ + EM GH+++DVV IIGTQDIVFGE+DR
Sbjct: 363 GVYIISDGANKPYRLKIRAPGFAHLQGMDEMARGHLLADVVAIIGTQDIVFGEVDR 418
>gi|384086273|ref|ZP_09997448.1| NADH dehydrogenase subunit D [Acidithiobacillus thiooxidans ATCC
19377]
Length = 417
Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 293/415 (70%), Positives = 349/415 (84%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI ++ +NFGPQHP+AHGVLRL+LEL+GEV+ +ADPHIGLLHRATEKLAE +TYLQ+LPY
Sbjct: 3 EINNFTMNFGPQHPSAHGVLRLVLELDGEVIERADPHIGLLHRATEKLAENKTYLQNLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAY +A+EKLL +++P RAQYIR +FDEITR+LNHL+W+G+++LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYCLAVEKLLGLEVPRRAQYIRTLFDEITRVLNHLLWLGAYALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LY FREREDL+D YEAVSGARMHAAYYRPGGVYRDLP MPQY +S R+ +
Sbjct: 123 AMSVFLYCFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPAQMPQYVASPYRDARRLD 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN NRQG++LDFIEDFT RFP +DEYETLLTDNRIWKQR VGIGVV ERA+ +GFTG
Sbjct: 183 ELNANRQGTVLDFIEDFTRRFPGYVDEYETLLTDNRIWKQRTVGIGVVGSERAVQLGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLR SGV WDLR+ PY Y L+F+IP+G GD YDRYLVR+ EMRQSN II QC+ W
Sbjct: 243 PMLRASGVAWDLRRTHPYAAYADLDFEIPVGSTGDCYDRYLVRVAEMRQSNHIIAQCVNW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI+++ K+ +P R MK +ME LIHHFKLF+EG VP GE+Y+ VE PKGEFG
Sbjct: 303 LRQNPGPVITDDFKVAAPPREEMKGSMEALIHHFKLFSEGMSVPAGEVYTAVEAPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY++SDGANKPYR+KIR+PGF+HL ++ EM GHMI+DVV I+ T DIVFGEIDR
Sbjct: 363 IYMISDGANKPYRMKIRAPGFSHLAAMDEMAKGHMIADVVAILSTMDIVFGEIDR 417
>gi|88812973|ref|ZP_01128216.1| NADH dehydrogenase delta subunit [Nitrococcus mobilis Nb-231]
gi|88789751|gb|EAR20875.1| NADH dehydrogenase delta subunit [Nitrococcus mobilis Nb-231]
Length = 417
Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 295/415 (71%), Positives = 350/415 (84%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI SY +NFGPQHPAAHGVLRL+LE++GEVVR+ DPHIGLLHRATEKLAE + + QS+ Y
Sbjct: 3 EISSYTVNFGPQHPAAHGVLRLVLEMDGEVVRRVDPHIGLLHRATEKLAETKPFNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYV+AIEKLL ++ P+RAQYIRV+FDE+TR+LNHL+W+G+H+LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYVLAIEKLLGLEPPLRAQYIRVLFDELTRILNHLLWLGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LY F +REDL+DCYEAVSG RMHA YYRPGGVYRDLP MP Y+ S R+ K +
Sbjct: 123 AMTVFLYCFAKREDLMDCYEAVSGTRMHATYYRPGGVYRDLPMRMPHYQPSPKRSQKDLE 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN RQGS+LD+IE F FP IDEYETLLTDNRIWKQRLV + VV PERAL +GFTG
Sbjct: 183 RLNRARQGSMLDYIEHFAAEFPHCIDEYETLLTDNRIWKQRLVDVAVVDPERALQLGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV+WDLRKKQPY +Y+ L FDIP+G NGD YDRYLVR+EEMRQS ++I QC+ W
Sbjct: 243 PMLRGSGVEWDLRKKQPYAVYDQLAFDIPVGTNGDCYDRYLVRVEEMRQSVRLITQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPV+ ++K+ P+R MK +ME LIHHFKLFTEG+ VP GE Y+ VE PKGEFG
Sbjct: 303 LRANPGPVMVADHKVAPPSREEMKDDMESLIHHFKLFTEGYCVPEGEAYAAVEAPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
Y+VSDGANKPYR+K+R+PGFAHL ++ EM GHM++DVVTIIGT D+VFGEIDR
Sbjct: 363 AYIVSDGANKPYRLKLRAPGFAHLAAMDEMSRGHMLADVVTIIGTLDVVFGEIDR 417
>gi|406947125|gb|EKD78117.1| hypothetical protein ACD_42C00038G0001 [uncultured bacterium]
Length = 410
Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 295/415 (71%), Positives = 351/415 (84%), Gaps = 7/415 (1%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
E+K+Y NFGPQHPAAHGVLRLILE++GEV++K DPHIGLLHRATEKLAE + + Q++ Y
Sbjct: 3 ELKNYTFNFGPQHPAAHGVLRLILEVDGEVIQKIDPHIGLLHRATEKLAESKPFNQTIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEH YV+AIEKLL I +PIRA YIR MFDEITR+LNHL+W+G+H+LD G
Sbjct: 63 MDRLDYVSMMCNEHGYVLAIEKLLGITVPIRALYIRTMFDEITRILNHLLWLGAHALDCG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LY FREREDL+DCYEAVSGARMHA YYRPGGV RDLP+ MP+YKSS ++
Sbjct: 123 AMSVFLYCFREREDLMDCYEAVSGARMHATYYRPGGVARDLPDTMPRYKSS-------SQ 175
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
N NR+GSLLDFIEDFTNRFPK +DEYETLLTDNRI+KQR VGI VSPERAL +GFTG
Sbjct: 176 YSNSNREGSLLDFIEDFTNRFPKLVDEYETLLTDNRIFKQRTVGIAAVSPERALQLGFTG 235
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV WDLR+KQPY Y+ L+F IP+GKNGD YDRYLVR+EEMRQSN IIKQC++W
Sbjct: 236 PMLRGSGVAWDLRRKQPYAAYDKLDFQIPVGKNGDCYDRYLVRVEEMRQSNNIIKQCVEW 295
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L N GP+ S++ K++ P R MK +ME +IHHFK FTEG+ VP GE+Y+ VEHPKGEFG
Sbjct: 296 LCKNSGPIKSDDFKVSPPPREVMKESMEGMIHHFKYFTEGYCVPAGEVYAAVEHPKGEFG 355
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YL+SDGANKPYR+K+R+ GF+HL ++ E+ GHMI+D+V +I + DIVFGEIDR
Sbjct: 356 VYLISDGANKPYRLKVRAAGFSHLAAMDELCRGHMIADLVAVISSLDIVFGEIDR 410
>gi|381156954|ref|ZP_09866188.1| NADH dehydrogenase I, D subunit [Thiorhodovibrio sp. 970]
gi|380880817|gb|EIC22907.1| NADH dehydrogenase I, D subunit [Thiorhodovibrio sp. 970]
Length = 419
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 295/417 (70%), Positives = 352/417 (84%), Gaps = 2/417 (0%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y LNFGPQHPAAHGVLRL+LE+ GEV+ +ADPHIGLLHR TEKLAE + + QS+ Y
Sbjct: 3 EIRNYTLNFGPQHPAAHGVLRLVLEMSGEVIERADPHIGLLHRGTEKLAETKPFNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEH YV AIEKLL I+ PIRAQYIR MFDEITR+LNHLMW+G+H+LD+G
Sbjct: 63 MDRLDYVSMMCNEHGYVRAIEKLLAIEAPIRAQYIRTMFDEITRILNHLMWLGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQY--KSSIIRNNKA 456
AM V LY FREREDL+DCYEAVSGAR+HA YYRPGGVYRDLP MP++ +SS +
Sbjct: 123 AMSVFLYCFREREDLMDCYEAVSGARLHATYYRPGGVYRDLPGQMPRFSEESSKWHGKRE 182
Query: 457 TKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGF 516
+ LN+ R+GSLLDFI+DFT RFP +DEYETLLTDNRIWKQR VGIGVV RA ++GF
Sbjct: 183 FQSLNKAREGSLLDFIQDFTERFPNLVDEYETLLTDNRIWKQRTVGIGVVDGARAKALGF 242
Query: 517 TGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCI 576
TGPMLRGSGV+WDLRKKQPY Y+ ++FDIP+G NGD YDRYLVR+EEMRQSN+I++QCI
Sbjct: 243 TGPMLRGSGVEWDLRKKQPYAAYDKVDFDIPVGVNGDCYDRYLVRVEEMRQSNRIVRQCI 302
Query: 577 KWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
WLR+N GPV+ ++K++ P R MK +ME LIHHFKLFTEG+ P GE+Y+ VE PKGE
Sbjct: 303 DWLRANPGPVMIGDHKVSPPVRTEMKDDMEALIHHFKLFTEGYCPPAGEVYAAVEAPKGE 362
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG Y+V+DGANKPYR+K+R+PGFAHL ++ EM GHM++DVV IIGT DIVFGE+DR
Sbjct: 363 FGCYIVADGANKPYRLKVRAPGFAHLAAMDEMSRGHMLADVVAIIGTMDIVFGEVDR 419
>gi|209363824|ref|YP_001423959.2| NADH dehydrogenase subunit D [Coxiella burnetii Dugway 5J108-111]
gi|207081757|gb|ABS78327.2| NADH-quinone oxidoreductase chain D [Coxiella burnetii Dugway
5J108-111]
Length = 424
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 298/415 (71%), Positives = 352/415 (84%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
E+++Y NFGPQHPAAHGVLRLI+E++GEV+++ DPHIGLLHRATEKLAE + Y Q++ Y
Sbjct: 10 EVRNYTFNFGPQHPAAHGVLRLIVEVDGEVIQRIDPHIGLLHRATEKLAESKPYNQTIGY 69
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIEKLL I+ PIRA+YIR MFDEITR+LNHL+W+G+H+LD+G
Sbjct: 70 MDRLDYVSMMANEHGYVLAIEKLLGIEPPIRAKYIRTMFDEITRILNHLLWLGAHALDVG 129
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LY FREREDL+DCYEAVSGARMHA YYRPGGVYRDLP+ MP+YK S N KA K
Sbjct: 130 AMTVFLYCFREREDLMDCYEAVSGARMHATYYRPGGVYRDLPDSMPKYKPSRWHNEKAVK 189
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R+GSLLDFI DFT RFP IDEYE+LLTDNRIWKQR VGIGVVS ERAL +GFTG
Sbjct: 190 KMNEAREGSLLDFIWDFTARFPNLIDEYESLLTDNRIWKQRTVGIGVVSAERALQLGFTG 249
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLR SGV+WDLRKKQPY Y+ ++FDIPIG+ GD YDRYLVRIEEMRQSN+II+QC++W
Sbjct: 250 PMLRASGVEWDLRKKQPYAAYDRVDFDIPIGREGDCYDRYLVRIEEMRQSNRIIRQCVEW 309
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI ++ KI P R MK +ME LIHHFKLFTEG+ VP GE Y+ VE PKGEFG
Sbjct: 310 LRKNPGPVIIDDYKIVPPQREVMKRDMEALIHHFKLFTEGYIVPEGEAYAAVEQPKGEFG 369
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDGANKPYR+K+R+ + HL +++EM GHMI+D+V II + DIVFGEIDR
Sbjct: 370 VYIVSDGANKPYRVKVRAASYPHLAAMNEMCRGHMIADLVAIISSIDIVFGEIDR 424
>gi|345873387|ref|ZP_08825299.1| NAD(P)H-quinone oxidoreductase subunit H [Thiorhodococcus drewsii
AZ1]
gi|343917275|gb|EGV28081.1| NAD(P)H-quinone oxidoreductase subunit H [Thiorhodococcus drewsii
AZ1]
Length = 418
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 299/416 (71%), Positives = 349/416 (83%), Gaps = 1/416 (0%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y LNFGPQHP+AHGVLRL+LEL+GEV+ +ADPH+GLLHRATEKLAE + Y QS+ Y
Sbjct: 3 EIRNYTLNFGPQHPSAHGVLRLVLELDGEVIERADPHVGLLHRATEKLAEYKPYNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEH YV AIEKLL ++ P+RAQYIR +FDEITR+LNHLMW+ +H+LDIG
Sbjct: 63 MDRLDYVSMMCNEHGYVRAIEKLLGVEPPVRAQYIRTLFDEITRILNHLMWLAAHALDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYK-SSIIRNNKAT 457
AM V LY FREREDL+DCYEAVSGARMHA YYRPGGV+RDLP+ MPQY+ SS + +
Sbjct: 123 AMSVFLYCFREREDLMDCYEAVSGARMHATYYRPGGVHRDLPDRMPQYQGSSKWHSERTI 182
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
N RQGSLLDFIEDFT RFP ++DEYETLLTDNRIWKQR V IGVVSPERA +GFT
Sbjct: 183 AKRNGARQGSLLDFIEDFTERFPTHVDEYETLLTDNRIWKQRTVDIGVVSPERATQLGFT 242
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GPMLRGSG+ WDLRKKQPY Y+ ++FDIP+G NGD YDRYLVR+EEMRQSN+IIK C+
Sbjct: 243 GPMLRGSGIAWDLRKKQPYAAYDKVDFDIPVGVNGDCYDRYLVRMEEMRQSNRIIKHCVD 302
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
WLR N GPV +++KI P R MK +ME LIHHFKLFTEG+ P GE+Y+ VE PKGEF
Sbjct: 303 WLRVNPGPVSIDDHKIVPPKRAEMKGDMEALIHHFKLFTEGYCPPAGEVYAAVEAPKGEF 362
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G ++VSDGANKPYR+K+R+PGF HL +L EM GHM++DVV IIGT DIVFGEIDR
Sbjct: 363 GCFIVSDGANKPYRLKVRAPGFPHLAALDEMSRGHMLADVVAIIGTLDIVFGEIDR 418
>gi|229891498|sp|A9KBK7.3|NUOD_COXBN RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
Length = 417
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 298/415 (71%), Positives = 352/415 (84%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
E+++Y NFGPQHPAAHGVLRLI+E++GEV+++ DPHIGLLHRATEKLAE + Y Q++ Y
Sbjct: 3 EVRNYTFNFGPQHPAAHGVLRLIVEVDGEVIQRIDPHIGLLHRATEKLAESKPYNQTIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIEKLL I+ PIRA+YIR MFDEITR+LNHL+W+G+H+LD+G
Sbjct: 63 MDRLDYVSMMANEHGYVLAIEKLLGIEPPIRAKYIRTMFDEITRILNHLLWLGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LY FREREDL+DCYEAVSGARMHA YYRPGGVYRDLP+ MP+YK S N KA K
Sbjct: 123 AMTVFLYCFREREDLMDCYEAVSGARMHATYYRPGGVYRDLPDSMPKYKPSRWHNEKAVK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R+GSLLDFI DFT RFP IDEYE+LLTDNRIWKQR VGIGVVS ERAL +GFTG
Sbjct: 183 KMNEAREGSLLDFIWDFTARFPNLIDEYESLLTDNRIWKQRTVGIGVVSAERALQLGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLR SGV+WDLRKKQPY Y+ ++FDIPIG+ GD YDRYLVRIEEMRQSN+II+QC++W
Sbjct: 243 PMLRASGVEWDLRKKQPYAAYDRVDFDIPIGREGDCYDRYLVRIEEMRQSNRIIRQCVEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI ++ KI P R MK +ME LIHHFKLFTEG+ VP GE Y+ VE PKGEFG
Sbjct: 303 LRKNPGPVIIDDYKIVPPQREVMKRDMEALIHHFKLFTEGYIVPEGEAYAAVEQPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDGANKPYR+K+R+ + HL +++EM GHMI+D+V II + DIVFGEIDR
Sbjct: 363 VYIVSDGANKPYRVKVRAASYPHLAAMNEMCRGHMIADLVAIISSIDIVFGEIDR 417
>gi|431930018|ref|YP_007243064.1| NADH dehydrogenase I subunit D [Thioflavicoccus mobilis 8321]
gi|431828321|gb|AGA89434.1| NADH dehydrogenase I, D subunit [Thioflavicoccus mobilis 8321]
Length = 418
Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 297/416 (71%), Positives = 348/416 (83%), Gaps = 1/416 (0%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y LNFGPQHPAAHGVLRL+LE++GEV+ +ADPHIGLLHR TEKLAE + + QS+ Y
Sbjct: 3 EIRNYTLNFGPQHPAAHGVLRLVLEMDGEVIERADPHIGLLHRGTEKLAESKPFNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEH YV AIEKLL I+ PIRAQYIR MFDEITR+LNHLMW+G+H LD+G
Sbjct: 63 MDRLDYVSMMCNEHGYVRAIEKLLGIEAPIRAQYIRTMFDEITRILNHLMWLGAHGLDLG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQY-KSSIIRNNKAT 457
AM + +Y FREREDLLDCYEAVSGAR+HA YYRPGGVYRDLP+ MP+Y S ++K
Sbjct: 123 AMSIFIYCFREREDLLDCYEAVSGARLHATYYRPGGVYRDLPDQMPRYLGGSKWHSDKEI 182
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
N R+GSLLDFIEDFT RFP +DEYETLLTDNRIWKQR VGIGVVSPERA +GFT
Sbjct: 183 AARNAAREGSLLDFIEDFTERFPGCVDEYETLLTDNRIWKQRTVGIGVVSPERAQQLGFT 242
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GPMLRGSG+ WDLRKKQPY Y+ ++FDIPIG NGD YDRYLVR+EEMRQ+N II+QC+
Sbjct: 243 GPMLRGSGIAWDLRKKQPYAAYDAVDFDIPIGVNGDCYDRYLVRMEEMRQANHIIRQCVD 302
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
WLR+N GPV+ ++K+ P+R MK +ME LIHHFKLFTEG+ P GE+Y+ VE PKGEF
Sbjct: 303 WLRANPGPVMIEDHKVVPPSRKAMKDDMEALIHHFKLFTEGYCPPPGEVYAAVEAPKGEF 362
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G Y+V DGANKPYR+K+R+PGF HL ++ EM GHM++DVV IIGT DIVFGEIDR
Sbjct: 363 GCYIVCDGANKPYRLKVRAPGFPHLAAMDEMARGHMLADVVAIIGTMDIVFGEIDR 418
>gi|407893635|ref|ZP_11152665.1| NADH dehydrogenase subunit D [Diplorickettsia massiliensis 20B]
Length = 572
Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 292/405 (72%), Positives = 346/405 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y LNFGPQHPAAHGVLRLILEL+GEV++ ADPHIGLLHRATEKLAE + Y QS+ Y
Sbjct: 3 EIRNYTLNFGPQHPAAHGVLRLILELDGEVIQSADPHIGLLHRATEKLAESKPYNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYV+AIEKLL I P RAQYIRV+FDE+TR+LNHL+W+G+H+LDIG
Sbjct: 63 MDRLDYVSMMCNEHAYVLAIEKLLGITPPQRAQYIRVLFDEVTRILNHLLWLGAHALDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LY FREREDL+DCYEAVSG+RMHA YYRPGGVYRDLP MPQYK S N K +
Sbjct: 123 AMTVFLYCFREREDLIDCYEAVSGSRMHATYYRPGGVYRDLPNKMPQYKVSKWHNKKDVQ 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+N NR+G LLDF+ DF NRFP+ IDEYE LLTDNRIWKQR VGIGV++PERA+ +G TG
Sbjct: 183 KMNANREGGLLDFLTDFANRFPQCIDEYENLLTDNRIWKQRTVGIGVLTPERAVQLGCTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
P+LRGSGV WDLRKKQPYE+Y+ L+FDIPIG+ GD YDRYL+R+EEMRQS +II+QCI W
Sbjct: 243 PILRGSGVAWDLRKKQPYEVYDQLDFDIPIGRQGDCYDRYLIRVEEMRQSTRIIQQCIAW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR + GPV+ ++KI P R+ MK +ME LIHHFKLFTEG+ P GE Y+ +EHPKGEFG
Sbjct: 303 LRQHPGPVMITDHKIAPPNRVEMKEDMESLIHHFKLFTEGYCTPPGEAYAAIEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGT 683
IYLVSDGANKPYR+KIR+ GF HL +L+E++SGHMI+D+V I+ +
Sbjct: 363 IYLVSDGANKPYRVKIRAAGFPHLAALNELVSGHMIADLVAILSS 407
>gi|350552112|ref|ZP_08921319.1| NAD(P)H-quinone oxidoreductase subunit H [Thiorhodospira sibirica
ATCC 700588]
gi|349795178|gb|EGZ48981.1| NAD(P)H-quinone oxidoreductase subunit H [Thiorhodospira sibirica
ATCC 700588]
Length = 417
Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 290/415 (69%), Positives = 353/415 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI+SY +NFGPQHP+AHGVLRL+LE+EGEVV +ADPHIGLLHR TEKLAE + Y QS+ Y
Sbjct: 3 EIRSYTMNFGPQHPSAHGVLRLVLEMEGEVVVRADPHIGLLHRGTEKLAESKPYNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSM+ NEH YV A+E L + +P RAQYIRV+FDEITR+LNHL+WIG+H+LDIG
Sbjct: 63 MDRLDYVSMLSNEHGYVRALEALAGLAVPERAQYIRVLFDEITRILNHLLWIGAHALDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM + LYAFREREDL+DCYEAVSGAR+HA+YYRPGGVYRDLP+ MPQY+ S + K K
Sbjct: 123 AMSMFLYAFREREDLMDCYEAVSGARLHASYYRPGGVYRDLPDQMPQYQPSRWTSEKQAK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
N R+GSLLDFIEDFT RFP +DEYETLLTDNRIWKQR VGIGVVSPERA+++GF+G
Sbjct: 183 QRNAAREGSLLDFIEDFTQRFPGCVDEYETLLTDNRIWKQRTVGIGVVSPERAVALGFSG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV WDLR+ QPY Y L+F+IP+G+ GD YDRYLVR+ EMR+SN+I++QC+ W
Sbjct: 243 PMLRGSGVAWDLRRTQPYAAYAALDFEIPVGQQGDCYDRYLVRVAEMRESNRIMRQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR++ GPV++ +T P R MK++ME +I+HFKLF+EG+ +P GE+Y+ VEHPKGEFG
Sbjct: 303 LRAHPGPVLAQAPGLTPPDRETMKTDMEAMINHFKLFSEGYCLPEGEVYTAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YL+SDGANKPYR+KIR+PGF HL +L EM GH+++DVV IIGTQDIVFGEIDR
Sbjct: 363 VYLLSDGANKPYRLKIRAPGFPHLAALDEMARGHLLADVVAIIGTQDIVFGEIDR 417
>gi|153207282|ref|ZP_01946046.1| NADH dehydrogenase (ubiquinone), D subunit [Coxiella burnetii 'MSU
Goat Q177']
gi|165918813|ref|ZP_02218899.1| NADH dehydrogenase (ubiquinone), D subunit [Coxiella burnetii Q321]
gi|212212185|ref|YP_002303121.1| NADH dehydrogenase subunit D [Coxiella burnetii CbuG_Q212]
gi|212218215|ref|YP_002305002.1| NADH dehydrogenase subunit D [Coxiella burnetii CbuK_Q154]
gi|229891289|sp|B6J697.1|NUOD_COXB1 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|229891290|sp|B6IZ48.1|NUOD_COXB2 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|120576770|gb|EAX33394.1| NADH dehydrogenase (ubiquinone), D subunit [Coxiella burnetii 'MSU
Goat Q177']
gi|165917537|gb|EDR36141.1| NADH dehydrogenase (ubiquinone), D subunit [Coxiella burnetii Q321]
gi|212010595|gb|ACJ17976.1| NADH-quinone oxidoreductase chain D [Coxiella burnetii CbuG_Q212]
gi|212012477|gb|ACJ19857.1| NADH-quinone oxidoreductase chain D [Coxiella burnetii CbuK_Q154]
Length = 417
Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 297/415 (71%), Positives = 352/415 (84%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
E+++Y NFGPQHPAAHGVLRLI+E++GEV+++ DPHIGLLHRATEKLAE + Y Q++ Y
Sbjct: 3 EVRNYTFNFGPQHPAAHGVLRLIVEVDGEVIQRIDPHIGLLHRATEKLAESKPYNQTIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIEKLL I+ PIRA+YIR MFDEITR+LNHL+W+G+H+LD+G
Sbjct: 63 MDRLDYVSMMANEHGYVLAIEKLLGIEPPIRAKYIRTMFDEITRILNHLLWLGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LY FREREDL+DCYEAVSGARMHA YYRPGGVYRDLP+ MP+YK S N KA K
Sbjct: 123 AMTVFLYCFREREDLMDCYEAVSGARMHATYYRPGGVYRDLPDSMPKYKPSRWHNEKAVK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R+GSLLDFI DFT RFP IDEYE+LLTDNRIWKQR VGIGVVS ERAL +GFTG
Sbjct: 183 KMNEAREGSLLDFIWDFTARFPNLIDEYESLLTDNRIWKQRTVGIGVVSAERALQLGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLR SGV+WDLRKKQPY Y+ ++FDIPIG+ GD YDRYLVRIEEMRQSN+II+QC++W
Sbjct: 243 PMLRASGVEWDLRKKQPYAAYDRVDFDIPIGREGDCYDRYLVRIEEMRQSNRIIRQCVEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+ ++ KI P R MK +ME LIHHFKLFTEG+ VP GE Y+ VE PKGEFG
Sbjct: 303 LRKNPGPVMIDDYKIVPPQREVMKRDMEALIHHFKLFTEGYIVPEGEAYAAVEQPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDGANKPYR+K+R+ + HL +++EM GHMI+D+V II + DIVFGEIDR
Sbjct: 363 VYIVSDGANKPYRVKVRAASYPHLAAMNEMCRGHMIADLVAIISSIDIVFGEIDR 417
>gi|406935964|gb|EKD69793.1| NADH-quinone oxidoreductase subunit D [uncultured bacterium]
Length = 421
Score = 639 bits (1648), Expect = e-180, Method: Compositional matrix adjust.
Identities = 295/415 (71%), Positives = 353/415 (85%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y NFGPQHPAAHGVLRLILE++GE + +ADPH+GLLHRATEKLAE + + ++ Y
Sbjct: 7 EIRNYVFNFGPQHPAAHGVLRLILEVDGETIVRADPHVGLLHRATEKLAESKPFNHTIGY 66
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSM+ NEH+YV+AIEKLL I P+RAQYIRVMFDEITR+LNHL+W+ +HSLD G
Sbjct: 67 MDRLDYVSMLSNEHSYVLAIEKLLGITPPVRAQYIRVMFDEITRILNHLLWLAAHSLDNG 126
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
M V LY FREREDLLDCYEAVSGARMHA YYRPGGVYRDLP+ MP+YK S N KAT
Sbjct: 127 GMAVFLYCFREREDLLDCYEAVSGARMHATYYRPGGVYRDLPDTMPKYKPSKWTNAKATA 186
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
NENR+GSLLDFI FT RFP +DEYE+LLT+NRIWKQR V IGVVSPERA+++GFTG
Sbjct: 187 ERNENREGSLLDFIWAFTERFPTCVDEYESLLTNNRIWKQRTVNIGVVSPERAIALGFTG 246
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGS V WDLRKKQPYE+Y+ L+FDIP+G NGD YDRYLVR+EEMRQSN II+QC++W
Sbjct: 247 PMLRGSNVAWDLRKKQPYEVYDRLDFDIPVGFNGDCYDRYLVRVEEMRQSNHIIRQCVEW 306
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L+ N GPV+ ++ KI P+RI+MK +ME +IHHFK TEG+ VP GE+Y+ VEHPKGEFG
Sbjct: 307 LKKNPGPVMIDDFKIAPPSRIDMKISMEAMIHHFKNMTEGYIVPEGEVYAAVEHPKGEFG 366
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YL+SDGANKPYR+KIR+ GF HL L+E+I GHMI+DVV+++ + DIVFGEIDR
Sbjct: 367 VYLISDGANKPYRMKIRAAGFPHLAGLNELIRGHMIADVVSVLSSLDIVFGEIDR 421
>gi|319787440|ref|YP_004146915.1| NADH dehydrogenase I subunit D [Pseudoxanthomonas suwonensis 11-1]
gi|317465952|gb|ADV27684.1| NADH dehydrogenase I, D subunit [Pseudoxanthomonas suwonensis 11-1]
Length = 435
Score = 639 bits (1648), Expect = e-180, Method: Compositional matrix adjust.
Identities = 293/415 (70%), Positives = 346/415 (83%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRLILE++GE + +ADPH+GLLHR TEKLAE + + QS+PY
Sbjct: 21 EIRNYTMNFGPQHPAAHGVLRLILEMDGETIVRADPHVGLLHRGTEKLAESKPFNQSIPY 80
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYV AIE LL I+ P RAQYIR MFDEITR+LNHLMW+GS++LD+G
Sbjct: 81 MDRLDYVSMMCNEHAYVRAIETLLGIEAPERAQYIRTMFDEITRILNHLMWVGSNALDLG 140
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFRERE+L+D YEAVSGARMHAAYYRPGGVYRDLP+ MP+YK S K
Sbjct: 141 AMAVFLYAFREREELMDVYEAVSGARMHAAYYRPGGVYRDLPDHMPKYKESPWHKGAKLK 200
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
NE R+GSLLD+IE FT FPK +DEYETLLTDNRIWKQR VGIGVV+PE+A + G TG
Sbjct: 201 RFNEAREGSLLDYIEHFTREFPKRVDEYETLLTDNRIWKQRTVGIGVVTPEQAHAWGMTG 260
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPY Y+ ++FDIP+G NGD YDRYLVRI EMRQSN+II QC+KW
Sbjct: 261 PMLRGSGIAWDLRKKQPYARYDAVDFDIPVGVNGDCYDRYLVRIAEMRQSNRIIAQCVKW 320
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L+ N GPV+ N K+ P R MK +ME LIHHFKLF+EG+ VP GE Y+ VE PKGEFG
Sbjct: 321 LKENPGPVMVRNFKVAPPKREEMKDDMEALIHHFKLFSEGYCVPAGETYAAVEAPKGEFG 380
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDGANKP+R+ +R+PGFAHL S+ E++ GHM++DVV +IGT D+VFGE+DR
Sbjct: 381 CYLVSDGANKPFRVHLRAPGFAHLSSMDEIVRGHMLADVVAMIGTYDLVFGEVDR 435
>gi|29654736|ref|NP_820428.1| NADH dehydrogenase subunit D [Coxiella burnetii RSA 493]
gi|161831608|ref|YP_001597290.1| NADH dehydrogenase subunit D [Coxiella burnetii RSA 331]
gi|81722522|sp|Q83BQ8.1|NUOD_COXBU RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|229891386|sp|A9N8X0.1|NUOD_COXBR RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|29542004|gb|AAO90942.1| NADH-quinone oxidoreductase chain D [Coxiella burnetii RSA 493]
gi|161763475|gb|ABX79117.1| NADH dehydrogenase (ubiquinone), D subunit [Coxiella burnetii RSA
331]
Length = 417
Score = 638 bits (1646), Expect = e-180, Method: Compositional matrix adjust.
Identities = 296/415 (71%), Positives = 351/415 (84%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
E+++Y NFGPQHPAAHGVLRLI+E++GEV+++ DPHIGLLHRATEKLAE + Y Q++ Y
Sbjct: 3 EVRNYTFNFGPQHPAAHGVLRLIVEVDGEVIQRIDPHIGLLHRATEKLAESKPYNQTIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIEKLL I+ PIRA+YIR MFDEITR+LNHL+W+G+H+LD+G
Sbjct: 63 MDRLDYVSMMANEHGYVLAIEKLLGIEPPIRAKYIRTMFDEITRILNHLLWLGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LY FREREDL+DCYEAVSGARMHA YYRPGGVYRDLP+ MP+YK S N KA K
Sbjct: 123 AMTVFLYCFREREDLMDCYEAVSGARMHATYYRPGGVYRDLPDSMPKYKPSRWHNEKAVK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R+GSLLDFI DFT RFP IDEYE+LLTDNRIWKQR VGIGVVS ERAL +GFTG
Sbjct: 183 KMNEAREGSLLDFIWDFTARFPNLIDEYESLLTDNRIWKQRTVGIGVVSAERALQLGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLR SGV+WDLRKKQPY Y+ ++FDIPIG+ GD YDRYLVRIEEMRQSN+II+QC++W
Sbjct: 243 PMLRASGVEWDLRKKQPYAAYDRVDFDIPIGREGDCYDRYLVRIEEMRQSNRIIRQCVEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N G V+ ++ KI P R MK +ME LIHHFKLFTEG+ VP GE Y+ VE PKGEFG
Sbjct: 303 LRKNPGSVMIDDYKIVPPQREVMKRDMEALIHHFKLFTEGYIVPEGEAYAAVEQPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDGANKPYR+K+R+ + HL +++EM GHMI+D+V II + DIVFGEIDR
Sbjct: 363 VYIVSDGANKPYRVKVRAASYPHLAAMNEMCRGHMIADLVAIISSIDIVFGEIDR 417
>gi|288942131|ref|YP_003444371.1| NADH dehydrogenase I subunit D [Allochromatium vinosum DSM 180]
gi|288897503|gb|ADC63339.1| NADH dehydrogenase I, D subunit [Allochromatium vinosum DSM 180]
Length = 418
Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust.
Identities = 296/416 (71%), Positives = 349/416 (83%), Gaps = 1/416 (0%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y LNFGPQHP+AHGVLRL+LE++GEV+ +ADPHIGLLHR TEKLAE + Y QS+ Y
Sbjct: 3 EIRNYTLNFGPQHPSAHGVLRLVLEMDGEVIERADPHIGLLHRGTEKLAEYKPYNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEH YV AIEKLL ++ P RAQYIR +FDEITR+LNHLMW+ +H+LDIG
Sbjct: 63 MDRLDYVSMMCNEHGYVRAIEKLLGVQAPERAQYIRTLFDEITRILNHLMWLAAHALDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKS-SIIRNNKAT 457
AM V LY FREREDLLDCYEAVSGARMHA YYRPGGV+RDLP+ MP+Y+ S + +
Sbjct: 123 AMSVFLYCFREREDLLDCYEAVSGARMHATYYRPGGVHRDLPDTMPRYEGKSKWHSAREI 182
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
N R GSLLDFI+DFT+RFP ++DEYETLLTDNRIWKQR V IGVVSPERAL +GFT
Sbjct: 183 AQRNSARDGSLLDFIQDFTDRFPGHVDEYETLLTDNRIWKQRTVDIGVVSPERALQLGFT 242
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GPMLRGSG++WDLRKKQPY Y+ ++FDIP+G NGD YDRYLVR+EEMRQSN+II+QC+
Sbjct: 243 GPMLRGSGIEWDLRKKQPYAAYHQVDFDIPVGVNGDCYDRYLVRMEEMRQSNRIIRQCVD 302
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
WLR+N GPV ++K+ P R +K NME LIHHFKLFTEG+ P GE+Y+ VE PKGEF
Sbjct: 303 WLRANPGPVSIEDHKVVPPKRAEVKENMEALIHHFKLFTEGYCPPPGEVYAAVEAPKGEF 362
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G Y+VSDGANKPYR+K+R+PGF HL +L EM GHM++DVV IIGT DIVFGEIDR
Sbjct: 363 GCYIVSDGANKPYRLKVRAPGFPHLAALDEMSRGHMLADVVAIIGTLDIVFGEIDR 418
>gi|344208257|ref|YP_004793398.1| NAD(P)H-quinone oxidoreductase subunit H [Stenotrophomonas
maltophilia JV3]
gi|343779619|gb|AEM52172.1| NAD(P)H-quinone oxidoreductase subunit H [Stenotrophomonas
maltophilia JV3]
Length = 435
Score = 635 bits (1638), Expect = e-179, Method: Compositional matrix adjust.
Identities = 291/415 (70%), Positives = 349/415 (84%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRLILE++GE + +ADPH+GLLHR TEKLAE + + QS+ Y
Sbjct: 21 EIRNYTMNFGPQHPAAHGVLRLILEMDGETIMRADPHVGLLHRGTEKLAESKPFNQSIGY 80
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYV AIE L+ I+ P RAQYIR M+DEITR+LNHLMW+GS++LD+G
Sbjct: 81 MDRLDYVSMMCNEHAYVRAIETLMGIEAPERAQYIRTMYDEITRILNHLMWLGSNALDLG 140
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V+LYAFRERE+L+DCYEAVSGARMHAAYYRPGGVYRDLP+ MP+YK S KA K
Sbjct: 141 AMAVMLYAFREREELMDCYEAVSGARMHAAYYRPGGVYRDLPDHMPKYKESRWHKGKALK 200
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN +R+GSLLDF+E+FT FPK IDEYETLLTDNRIWKQR VGIGVV+PE A G TG
Sbjct: 201 QLNASREGSLLDFLENFTVEFPKRIDEYETLLTDNRIWKQRTVGIGVVTPELAHQWGMTG 260
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WDLRKK+PY Y+ ++FDIP+GK GD YDRYLVR+ EMR+SN+IIKQC+ W
Sbjct: 261 VMLRGSGVAWDLRKKRPYAKYDAVDFDIPLGKEGDCYDRYLVRVAEMRESNRIIKQCVAW 320
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L++N GPV+ N K+ P R +MK +ME LIHHFKLF+EG+ VP GE YS VE PKGEFG
Sbjct: 321 LKANPGPVMVKNFKVAPPKREDMKDDMEALIHHFKLFSEGYCVPAGETYSAVEAPKGEFG 380
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDGANKP+R+ +R+PGFAHL S+ ++ GHM++DVV +IGT D+VFGE+DR
Sbjct: 381 CYLVSDGANKPFRVHLRAPGFAHLSSIDSIVRGHMLADVVAMIGTYDLVFGEVDR 435
>gi|433676743|ref|ZP_20508816.1| NADH dehydrogenase I subunit D [Xanthomonas translucens pv.
translucens DSM 18974]
gi|440730796|ref|ZP_20910865.1| NADH dehydrogenase subunit D [Xanthomonas translucens DAR61454]
gi|430818140|emb|CCP39138.1| NADH dehydrogenase I subunit D [Xanthomonas translucens pv.
translucens DSM 18974]
gi|440377114|gb|ELQ13768.1| NADH dehydrogenase subunit D [Xanthomonas translucens DAR61454]
Length = 435
Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust.
Identities = 289/415 (69%), Positives = 344/415 (82%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRLILE++GE V +ADPHIGLLHR TEKLAE + + QS+ Y
Sbjct: 21 EIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESKPFNQSIGY 80
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYV AIE L+ I+ P RAQYIR MFDEITR+LNHLMW+GS+ LD+G
Sbjct: 81 MDRLDYVSMMCNEHAYVRAIETLMGIEAPERAQYIRTMFDEITRILNHLMWVGSNGLDLG 140
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V+LYAFRERE+L+DCYEAVSGARMHA YYRPGGVYRDLP+ MP+YK S A K
Sbjct: 141 AMAVMLYAFREREELMDCYEAVSGARMHATYYRPGGVYRDLPDRMPKYKESRWHKGNALK 200
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN R+GS+LDF+EDFTN FP +DEYETLLTDNRIWKQR VGIGVV+PE+A TG
Sbjct: 201 RLNAAREGSMLDFLEDFTNTFPGRVDEYETLLTDNRIWKQRTVGIGVVTPEQAYGWSMTG 260
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG++WDLRKKQPY Y+ ++FDIP+G NGD YDRYLVR+ EMR+SN+II+QC+KW
Sbjct: 261 VMLRGSGIEWDLRKKQPYAKYDAVDFDIPVGTNGDCYDRYLVRVAEMRESNRIIRQCVKW 320
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPV+ N K+ P R MK +ME LIHHFKLF+EG+ VP GE Y VE PKGEFG
Sbjct: 321 LRANPGPVMVENFKVAPPKRAEMKDDMEALIHHFKLFSEGYCVPAGETYCAVEAPKGEFG 380
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YL SDGANKP+R+ +R+PGFAHL S+ ++ GHM++DVV +IGT D+VFGE+DR
Sbjct: 381 CYLASDGANKPFRVHLRAPGFAHLSSMDAIVRGHMLADVVAMIGTYDLVFGEVDR 435
>gi|289667377|ref|ZP_06488452.1| NADH dehydrogenase subunit D [Xanthomonas campestris pv. musacearum
NCPPB 4381]
Length = 435
Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust.
Identities = 286/415 (68%), Positives = 350/415 (84%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRLILE++GE V +ADPHIGLLHR TEKLAE + + QS+PY
Sbjct: 21 EIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESKPFNQSVPY 80
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYV+AIE L+ I+ P RAQYIR MFDEITR+ NHLMW+GS++LD+G
Sbjct: 81 MDRLDYVSMMCNEHAYVLAIESLMGIEAPERAQYIRTMFDEITRIKNHLMWVGSNALDLG 140
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V+LYAFRERE+L+D YEAVSGARMHAAYYRPGGVYRDLP+ MP+YK S A K
Sbjct: 141 AMAVMLYAFREREELMDVYEAVSGARMHAAYYRPGGVYRDLPDRMPKYKESRWHKGGALK 200
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN R+GS+LDF+EDFTN FP +DEYETLLTDNRIWKQR V +G++SP+ A + G TG
Sbjct: 201 QLNAAREGSMLDFLEDFTNTFPSRVDEYETLLTDNRIWKQRTVDVGIISPDLARAWGMTG 260
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG++WDLRKKQPY Y+ ++FDIP+G NGD YDRYLVR+ EMR+SN+IIKQC+KW
Sbjct: 261 PMLRGSGIEWDLRKKQPYAKYDAVDFDIPVGTNGDCYDRYLVRVAEMRESNRIIKQCVKW 320
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L++N GPV+ N K+ P+R MK +ME LIHHFKLF+EG+ VP GE YS VE PKGEFG
Sbjct: 321 LKANPGPVMVTNFKVAPPSREGMKDDMEALIHHFKLFSEGYCVPAGETYSAVEAPKGEFG 380
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YL+SDGANKP+R+ +R+PGFAHL S+ ++ G++++DVV +IGT D+VFGE+DR
Sbjct: 381 CYLMSDGANKPFRVHLRAPGFAHLSSMDAVVRGYLLADVVAMIGTYDLVFGEVDR 435
>gi|190575275|ref|YP_001973120.1| NADH dehydrogenase subunit D [Stenotrophomonas maltophilia K279a]
gi|424669586|ref|ZP_18106611.1| NADH-quinone oxidoreductase subunit D [Stenotrophomonas maltophilia
Ab55555]
gi|229891302|sp|B2FNX6.1|NUOD_STRMK RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|190013197|emb|CAQ46830.1| putative NADH dehydrogenase I chain D [Stenotrophomonas maltophilia
K279a]
gi|401071657|gb|EJP80168.1| NADH-quinone oxidoreductase subunit D [Stenotrophomonas maltophilia
Ab55555]
gi|456736841|gb|EMF61567.1| NADH-ubiquinone oxidoreductase chain D [Stenotrophomonas
maltophilia EPM1]
Length = 435
Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust.
Identities = 291/415 (70%), Positives = 349/415 (84%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRLILE++GE + +ADPH+GLLHR TEKLAE + + QS+ Y
Sbjct: 21 EIRNYTMNFGPQHPAAHGVLRLILEMDGETIMRADPHVGLLHRGTEKLAESKPFNQSIGY 80
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYV AIE L+ I+ P RAQYIR M+DEITR+LNHLMW+GS++LD+G
Sbjct: 81 MDRLDYVSMMCNEHAYVRAIETLMGIEAPERAQYIRTMYDEITRILNHLMWLGSNALDLG 140
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V+LYAFRERE+L+DCYEAVSGARMHAAYYRPGGVYRDLP+ MP+YK S KA K
Sbjct: 141 AMAVMLYAFREREELMDCYEAVSGARMHAAYYRPGGVYRDLPDHMPKYKESRWHKGKALK 200
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN +R+GSLLDF+E+FT FPK IDEYETLLTDNRIWKQR VGIGVV+PE A G TG
Sbjct: 201 QLNASREGSLLDFLENFTVEFPKRIDEYETLLTDNRIWKQRTVGIGVVTPELAHQWGMTG 260
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WDLRKK+PY Y+ ++FDIP+GK GD YDRYLVR+ EMR+SN+IIKQC+ W
Sbjct: 261 VMLRGSGVAWDLRKKRPYAKYDAVDFDIPLGKEGDCYDRYLVRVAEMRESNRIIKQCVAW 320
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L++N GPV+ N K+ P R +MK +ME LIHHFKLF+EG+ VP GE YS VE PKGEFG
Sbjct: 321 LKANPGPVMVKNFKVAPPRREDMKDDMEALIHHFKLFSEGYCVPAGETYSAVEAPKGEFG 380
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDGANKP+R+ +R+PGFAHL S+ ++ GHM++DVV +IGT D+VFGE+DR
Sbjct: 381 CYLVSDGANKPFRVHLRAPGFAHLSSIDSIVRGHMLADVVAMIGTYDLVFGEVDR 435
>gi|424792129|ref|ZP_18218392.1| NADH-ubiquinone oxidoreductasesubunit [Xanthomonas translucens pv.
graminis ART-Xtg29]
gi|422797224|gb|EKU25592.1| NADH-ubiquinone oxidoreductasesubunit [Xanthomonas translucens pv.
graminis ART-Xtg29]
Length = 435
Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust.
Identities = 289/415 (69%), Positives = 344/415 (82%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRLILE++GE V +ADPHIGLLHR TEKLAE + + QS+ Y
Sbjct: 21 EIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESKPFNQSIGY 80
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYV AIE L+ I+ P RAQYIR MFDEITR+LNHLMW+GS+ LD+G
Sbjct: 81 MDRLDYVSMMCNEHAYVRAIETLMGIEAPERAQYIRTMFDEITRILNHLMWVGSNGLDLG 140
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V+LYAFRERE+L+DCYEAVSGARMHA YYRPGGVYRDLP+ MP+YK S A K
Sbjct: 141 AMAVMLYAFREREELMDCYEAVSGARMHATYYRPGGVYRDLPDRMPKYKESRWHKGNALK 200
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN R+GS+LDF+EDFTN FP +DEYETLLTDNRIWKQR VGIGVV+PE+A TG
Sbjct: 201 RLNAAREGSMLDFLEDFTNSFPGRVDEYETLLTDNRIWKQRTVGIGVVTPEQAYGWSMTG 260
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG++WDLRKKQPY Y+ ++FDIP+G NGD YDRYLVR+ EMR+SN+II+QC+KW
Sbjct: 261 VMLRGSGIEWDLRKKQPYAKYDAVDFDIPVGTNGDCYDRYLVRVAEMRESNRIIQQCVKW 320
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPV+ N K+ P R MK +ME LIHHFKLF+EG+ VP GE Y VE PKGEFG
Sbjct: 321 LRANPGPVMVENFKVAPPKRAEMKDDMEALIHHFKLFSEGYCVPAGETYCAVEAPKGEFG 380
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YL SDGANKP+R+ +R+PGFAHL S+ ++ GHM++DVV +IGT D+VFGE+DR
Sbjct: 381 CYLASDGANKPFRVHLRAPGFAHLSSMDAIVRGHMLADVVAMIGTYDLVFGEVDR 435
>gi|289665176|ref|ZP_06486757.1| NADH dehydrogenase subunit D [Xanthomonas campestris pv. vasculorum
NCPPB 702]
Length = 435
Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust.
Identities = 286/415 (68%), Positives = 349/415 (84%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRLILE++GE V +ADPHIGLLHR TEKLAE + + QS+PY
Sbjct: 21 EIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESKPFNQSVPY 80
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYV AIE L+ I+ P RAQYIR MFDEITR+ NHLMW+GS++LD+G
Sbjct: 81 MDRLDYVSMMCNEHAYVRAIESLMGIEAPERAQYIRTMFDEITRIKNHLMWVGSNALDLG 140
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V+LYAFRERE+L+D YEAVSGARMHAAYYRPGGVYRDLP+ MP+YK S A K
Sbjct: 141 AMAVMLYAFREREELMDVYEAVSGARMHAAYYRPGGVYRDLPDRMPKYKESRWHKGGALK 200
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN R+GS+LDF+EDFTN FP +DEYETLLTDNRIWKQR V +G++SP+ A + G TG
Sbjct: 201 QLNAAREGSMLDFLEDFTNTFPSRVDEYETLLTDNRIWKQRTVDVGIISPDLARAWGMTG 260
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG++WDLRKKQPY Y+ ++FDIP+G NGD YDRYLVR+ EMR+SN+IIKQC+KW
Sbjct: 261 PMLRGSGIEWDLRKKQPYAKYDAVDFDIPVGTNGDCYDRYLVRVAEMRESNRIIKQCVKW 320
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L++N GPV+ N K+ P+R MK +ME LIHHFKLF+EG+ VP GE YS VE PKGEFG
Sbjct: 321 LKANPGPVMVTNFKVAPPSREGMKDDMEALIHHFKLFSEGYCVPAGETYSAVEAPKGEFG 380
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YL+SDGANKP+R+ +R+PGFAHL S+ ++ G++++DVV +IGT D+VFGE+DR
Sbjct: 381 CYLMSDGANKPFRVHLRAPGFAHLSSMDAVVRGYLLADVVAMIGTYDLVFGEVDR 435
>gi|384419842|ref|YP_005629202.1| NADH dehydrogenase i, d subunit [Xanthomonas oryzae pv. oryzicola
BLS256]
gi|353462755|gb|AEQ97034.1| NADH dehydrogenase i, d subunit [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 435
Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust.
Identities = 287/415 (69%), Positives = 348/415 (83%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRLILE++GE V +ADPHIGLLHR TEKLAE + + QS+PY
Sbjct: 21 EIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESKPFNQSVPY 80
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYV AIE L+ I+ P RAQYIR MFDEITR+ NHLMW+GS++LD+G
Sbjct: 81 MDRLDYVSMMCNEHAYVRAIESLMGIEAPERAQYIRTMFDEITRIKNHLMWVGSNALDLG 140
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V+LYAFRERE+L+D YEAVSGARMHAAYYRPGGVYRDLP+ MP+YK S A K
Sbjct: 141 AMAVMLYAFREREELMDVYEAVSGARMHAAYYRPGGVYRDLPDRMPRYKESRWHKGGALK 200
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN R+GS+LDF+EDFTN FP +DEYETLLTDNRIWKQR V +G+VSP+ A + G TG
Sbjct: 201 KLNAAREGSMLDFLEDFTNTFPSRVDEYETLLTDNRIWKQRTVDVGIVSPDLARAWGMTG 260
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG++WDLRKKQPY Y+ + FDIP+G NGD YDRYLVR+ EMR+SN+IIKQC+KW
Sbjct: 261 PMLRGSGIEWDLRKKQPYAKYDAVEFDIPVGTNGDCYDRYLVRVAEMRESNRIIKQCVKW 320
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L++N GPV+ N K+ P+R MK +ME LIHHFKLF+EG+ VP GE YS VE PKGEFG
Sbjct: 321 LKANPGPVMVTNFKVAPPSREGMKDDMEALIHHFKLFSEGYCVPAGETYSAVEAPKGEFG 380
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YL+SDGANKP+R+ +R+PGFAHL S+ ++ G++++DVV +IGT D+VFGE+DR
Sbjct: 381 CYLMSDGANKPFRVHLRAPGFAHLSSMDAVVRGYLLADVVAMIGTYDLVFGEVDR 435
>gi|386719343|ref|YP_006185669.1| NADH-ubiquinone oxidoreductase subunit D [Stenotrophomonas
maltophilia D457]
gi|384078905|emb|CCH13499.1| NADH-ubiquinone oxidoreductase chain D [Stenotrophomonas
maltophilia D457]
Length = 435
Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust.
Identities = 289/415 (69%), Positives = 349/415 (84%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRLILE++GE + +ADPH+GLLHR TEKLAE + + QS+ Y
Sbjct: 21 EIRNYTMNFGPQHPAAHGVLRLILEMDGETIMRADPHVGLLHRGTEKLAESKPFNQSIGY 80
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYV AIE L+ I+ P RAQYIR M+DEITR+LNHLMW+GS++LD+G
Sbjct: 81 MDRLDYVSMMCNEHAYVRAIETLMGIEAPERAQYIRTMYDEITRILNHLMWLGSNALDLG 140
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V+LYAFRERE+L+DCYEAVSGARMHAAYYRPGGVYRDLP+ MP+YK S KA K
Sbjct: 141 AMAVMLYAFREREELMDCYEAVSGARMHAAYYRPGGVYRDLPDHMPKYKESRWHKGKALK 200
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN +R+GSLLDF+E+FT FPK +DEYETLLTDNRIWKQR VGIGVV+PE A G TG
Sbjct: 201 QLNASREGSLLDFLENFTVEFPKRVDEYETLLTDNRIWKQRTVGIGVVTPELAHQWGMTG 260
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WDLRKK+PY Y+ ++FDIP+GK GD YDRYLVR+ EMR+SN+IIKQC+ W
Sbjct: 261 VMLRGSGVAWDLRKKRPYAKYDAVDFDIPLGKEGDCYDRYLVRVAEMRESNRIIKQCVAW 320
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L++N GPV+ N K+ P R +MK +ME LIHHFKLF+EG+ VP GE Y+ VE PKGEFG
Sbjct: 321 LKANPGPVMVKNFKVAPPKREDMKDDMEALIHHFKLFSEGYCVPAGETYAAVEAPKGEFG 380
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDGANKP+R+ +R+PGFAHL S+ ++ GHM++DVV +IGT D+VFGE+DR
Sbjct: 381 CYLVSDGANKPFRVHLRAPGFAHLSSIDSIVRGHMLADVVAMIGTYDLVFGEVDR 435
>gi|254520905|ref|ZP_05132960.1| NADH dehydrogenase (quinone), D subunit [Stenotrophomonas sp.
SKA14]
gi|219718496|gb|EED37021.1| NADH dehydrogenase (quinone), D subunit [Stenotrophomonas sp.
SKA14]
Length = 435
Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust.
Identities = 288/415 (69%), Positives = 349/415 (84%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRLILE++GE + +ADPH+GLLHR TEKLAE + + QS+ Y
Sbjct: 21 EIRNYTMNFGPQHPAAHGVLRLILEMDGETIMRADPHVGLLHRGTEKLAESKPFNQSIGY 80
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYV AIE L+ I+ P RAQYIR M+DEITR+LNHLMW+GS++LD+G
Sbjct: 81 MDRLDYVSMMCNEHAYVRAIETLMGIEAPERAQYIRTMYDEITRILNHLMWLGSNALDLG 140
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V+LYAFRERE+L+DCYEAVSGARMHAAYYRPGGVYRDLP+ MP+YK S KA K
Sbjct: 141 AMAVMLYAFREREELMDCYEAVSGARMHAAYYRPGGVYRDLPDHMPKYKESRWHKGKALK 200
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN +R+GSLLDF+E+FTN FP +DEYETLLTDNRIWKQR VGIGVV+PE A G TG
Sbjct: 201 QLNASREGSLLDFLENFTNEFPGRVDEYETLLTDNRIWKQRTVGIGVVTPELAHQWGMTG 260
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ WDLRKK+PY Y+ ++FDIP+GK GD YDRYLVR+ EMR+SN+IIKQC+ W
Sbjct: 261 VMLRGSGIAWDLRKKRPYAKYDAVDFDIPLGKEGDCYDRYLVRVAEMRESNRIIKQCVAW 320
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L++N GPV+ N K+ P R +MK +ME LIHHFKLF+EG+ VP GE Y+ VE PKGEFG
Sbjct: 321 LKANPGPVMVKNFKVAPPKREDMKDDMEALIHHFKLFSEGYCVPAGETYAAVEAPKGEFG 380
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDGANKP+R+ +R+PGFAHL S+ ++ GHM++DVV +IGT D+VFGE+DR
Sbjct: 381 CYLVSDGANKPFRVHLRAPGFAHLSSIDSVVRGHMLADVVAMIGTYDLVFGEVDR 435
>gi|408824971|ref|ZP_11209861.1| NADH dehydrogenase subunit D [Pseudomonas geniculata N1]
Length = 435
Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust.
Identities = 289/415 (69%), Positives = 349/415 (84%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRLILE++GE + +ADPH+GLLHR TEKLAE + + QS+ Y
Sbjct: 21 EIRNYTMNFGPQHPAAHGVLRLILEMDGETIMRADPHVGLLHRGTEKLAESKPFNQSIGY 80
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYV AIE L+ I+ P RAQYIR M+DEITR+LNHLMW+GS++LD+G
Sbjct: 81 MDRLDYVSMMCNEHAYVRAIETLMGIEAPERAQYIRTMYDEITRILNHLMWLGSNALDLG 140
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V+LYAFRERE+L+DCYEAVSGARMHAAYYRPGGVYRDLP+ MP+YK S KA K
Sbjct: 141 AMAVMLYAFREREELMDCYEAVSGARMHAAYYRPGGVYRDLPDHMPKYKESRWHKGKALK 200
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN +R+GSLLDF+E+FT FPK IDEYETLLTDNRIWKQR VGIGVV+PE A G TG
Sbjct: 201 QLNASREGSLLDFLENFTVEFPKRIDEYETLLTDNRIWKQRTVGIGVVTPELAHQWGMTG 260
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ WDLRKK+PY Y+ ++FDIP+GK GD YDRYLVR+ EMR+SN+IIKQC+ W
Sbjct: 261 VMLRGSGIAWDLRKKRPYAKYDAVDFDIPLGKEGDCYDRYLVRVAEMRESNRIIKQCVAW 320
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L++N GPV+ N K+ P R +MK +ME LIHHFKLF+EG+ VP GE Y+ VE PKGEFG
Sbjct: 321 LKANPGPVMVKNFKVAPPKREDMKDDMEALIHHFKLFSEGYCVPAGETYAAVEAPKGEFG 380
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDGANKP+R+ +R+PGFAHL S+ ++ GHM++DVV +IGT D+VFGE+DR
Sbjct: 381 CYLVSDGANKPFRVHLRAPGFAHLSSIDSVVRGHMLADVVAMIGTYDLVFGEVDR 435
>gi|344207464|ref|YP_004792605.1| NAD(P)H-quinone oxidoreductase subunit H [Stenotrophomonas
maltophilia JV3]
gi|343778826|gb|AEM51379.1| NAD(P)H-quinone oxidoreductase subunit H [Stenotrophomonas
maltophilia JV3]
Length = 436
Score = 633 bits (1632), Expect = e-178, Method: Compositional matrix adjust.
Identities = 292/424 (68%), Positives = 348/424 (82%)
Query: 270 PFRKDFPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQ 329
P R EI++Y +N GPQHPAAHGVLRL+LE++GE V +ADPH+GLLHR TEKLAE
Sbjct: 13 PIRDGRRDTEIRNYVMNLGPQHPAAHGVLRLVLEMDGETVVRADPHVGLLHRGTEKLAES 72
Query: 330 RTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMW 389
+ + QS+ YMDRLDYVSMMCNEH YV AIE LL I+ PIRAQYIR MFDEITR+LNHLM
Sbjct: 73 KPFNQSIGYMDRLDYVSMMCNEHGYVRAIETLLGIEAPIRAQYIRTMFDEITRILNHLMN 132
Query: 390 IGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSS 449
IG+ +LD+GAM V+LYAFRERE+L+DCYEAVSGARMHA YYRPGGVYRDLPE MP+YK S
Sbjct: 133 IGTGALDLGAMAVMLYAFREREELMDCYEAVSGARMHATYYRPGGVYRDLPEQMPKYKES 192
Query: 450 IIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPE 509
+ K + LN R+GSLLDFIE+FT FP IDEYETLLTDNRIWKQR VGIGVVSP+
Sbjct: 193 RWKTGKQLRRLNAAREGSLLDFIENFTREFPNRIDEYETLLTDNRIWKQRTVGIGVVSPQ 252
Query: 510 RALSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSN 569
+A+ G TG MLRGSGV WDLRKK+PY Y+ ++FDIP+G GD YDRYL R+ EMRQSN
Sbjct: 253 QAMDWGMTGVMLRGSGVAWDLRKKRPYAKYDAVDFDIPVGTAGDCYDRYLCRVAEMRQSN 312
Query: 570 KIIKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSC 629
+II+QC+ WLR+N GPV+ +N K+ P+R MKS+ME LIHHFKLF+EG+ VP GE Y+
Sbjct: 313 RIIRQCVAWLRANPGPVMVHNFKVAPPSRQEMKSDMEALIHHFKLFSEGYQVPAGETYAA 372
Query: 630 VEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFG 689
VE PKGEFG YL+SDGANKP+R+ +R+PGFAHL SL E++ GHM++DVV +IGT DIVFG
Sbjct: 373 VEAPKGEFGCYLISDGANKPFRVHLRAPGFAHLSSLDEIVRGHMLADVVAMIGTYDIVFG 432
Query: 690 EIDR 693
E+DR
Sbjct: 433 EVDR 436
>gi|58582856|ref|YP_201872.1| NADH dehydrogenase subunit D [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|84624721|ref|YP_452093.1| NADH dehydrogenase subunit D [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188577693|ref|YP_001914622.1| NADH dehydrogenase subunit D [Xanthomonas oryzae pv. oryzae PXO99A]
gi|75508124|sp|Q5GXT4.1|NUOD_XANOR RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|123521396|sp|Q2P0V8.1|NUOD_XANOM RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|218534467|sp|B2SVL6.1|NUOD_XANOP RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|58427450|gb|AAW76487.1| NADH-ubiquinone oxidoreductase NQO4 subunit [Xanthomonas oryzae pv.
oryzae KACC 10331]
gi|84368661|dbj|BAE69819.1| NADH-ubiquinone oxidoreductase NQO4 subunit [Xanthomonas oryzae pv.
oryzae MAFF 311018]
gi|188522145|gb|ACD60090.1| NADH dehydrogenase i, d subunit [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 435
Score = 632 bits (1630), Expect = e-178, Method: Compositional matrix adjust.
Identities = 286/415 (68%), Positives = 349/415 (84%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRLILE++GE V +ADPHIGLLHR TEKLAE + + QS+PY
Sbjct: 21 EIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESKPFNQSVPY 80
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYV AIE L+ I+ P RAQYIR MFDEITR+ NHLMW+GS++LD+G
Sbjct: 81 MDRLDYVSMMCNEHAYVRAIESLMGIEAPERAQYIRTMFDEITRIKNHLMWVGSNALDLG 140
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V+LYAFRERE+L+D YEAVSGARMHAAYYRPGGVYRDLP+ MP+YK S A K
Sbjct: 141 AMAVMLYAFREREELMDVYEAVSGARMHAAYYRPGGVYRDLPDRMPRYKESRWHKGGALK 200
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN R+GS+LDF+EDFTN FP +DEYETLLTDNRIWKQR V +G++SP+ A + G TG
Sbjct: 201 KLNAAREGSMLDFLEDFTNTFPLRVDEYETLLTDNRIWKQRTVDVGIISPDLARAWGMTG 260
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG++WDLRKKQPY Y+ ++FDIP+G NGD YDRYLVR+ EMR+SN+IIKQC+KW
Sbjct: 261 PMLRGSGIEWDLRKKQPYAKYDAVDFDIPVGTNGDCYDRYLVRVAEMRESNRIIKQCVKW 320
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L++N GPV+ N K+ P+R MK +ME LIHHFKLF+EG+ VP GE YS VE PKGEFG
Sbjct: 321 LKANPGPVMVTNFKVAPPSREGMKDDMEALIHHFKLFSEGYCVPAGETYSAVEAPKGEFG 380
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YL+SDGANKP+R+ +R+PGFAHL S+ ++ G++++DVV +IGT D+VFGE+DR
Sbjct: 381 CYLMSDGANKPFRVHLRAPGFAHLSSMDAVVRGYLLADVVAMIGTYDLVFGEVDR 435
>gi|194366601|ref|YP_002029211.1| NADH dehydrogenase subunit D [Stenotrophomonas maltophilia R551-3]
gi|229891265|sp|B4SQT3.1|NUOD2_STRM5 RecName: Full=NADH-quinone oxidoreductase subunit D 2; AltName:
Full=NADH dehydrogenase I subunit D 2; AltName:
Full=NDH-1 subunit D 2
gi|194349405|gb|ACF52528.1| NADH dehydrogenase I, D subunit [Stenotrophomonas maltophilia
R551-3]
Length = 435
Score = 632 bits (1629), Expect = e-178, Method: Compositional matrix adjust.
Identities = 288/415 (69%), Positives = 348/415 (83%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRLILE++GE + +ADPH+GLLHR TEKLAE + + QS+ Y
Sbjct: 21 EIRNYTMNFGPQHPAAHGVLRLILEMDGETIMRADPHVGLLHRGTEKLAESKPFNQSIGY 80
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYV +IE L+ I+ P RAQYIR +FDEITR+LNHLMW+GS++LD+G
Sbjct: 81 MDRLDYVSMMCNEHAYVRSIETLMGIEAPERAQYIRTLFDEITRILNHLMWLGSNALDLG 140
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V+LYAFRERE+L+DCYEAVSGARMHAAYYRPGGVYRDLP+ MP+YK S KA K
Sbjct: 141 AMAVMLYAFREREELMDCYEAVSGARMHAAYYRPGGVYRDLPDHMPKYKESRWHKGKALK 200
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN R+GSLLDF+E+FTN FP +DEYETLLTDNRIWKQR VGIGVV+PE A G TG
Sbjct: 201 NLNAAREGSLLDFLENFTNEFPGRVDEYETLLTDNRIWKQRTVGIGVVTPELAHQWGMTG 260
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ WDLRKK+PY Y+ ++FDIP+GK GD YDRYLVRI EMR+SN+IIKQC+ W
Sbjct: 261 VMLRGSGIAWDLRKKRPYAKYDAVDFDIPLGKEGDCYDRYLVRIAEMRESNRIIKQCVAW 320
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L++N GPV+ N K+ P R +MK +ME LIHHFKLF+EG+ VP GE Y+ VE PKGEFG
Sbjct: 321 LKANPGPVMVKNFKVAPPKREDMKDDMEALIHHFKLFSEGYCVPAGETYAAVEAPKGEFG 380
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDGANKP+R+ +R+PGFAHL S+ ++ GHM++DVV +IGT D+VFGE+DR
Sbjct: 381 CYLVSDGANKPFRVHLRAPGFAHLSSIDSIVRGHMLADVVAMIGTYDLVFGEVDR 435
>gi|194365804|ref|YP_002028414.1| NADH dehydrogenase subunit D [Stenotrophomonas maltophilia R551-3]
gi|218534464|sp|B4SJH6.1|NUOD1_STRM5 RecName: Full=NADH-quinone oxidoreductase subunit D 1; AltName:
Full=NADH dehydrogenase I subunit D 1; AltName:
Full=NDH-1 subunit D 1
gi|194348608|gb|ACF51731.1| NADH dehydrogenase I, D subunit [Stenotrophomonas maltophilia
R551-3]
Length = 436
Score = 632 bits (1629), Expect = e-178, Method: Compositional matrix adjust.
Identities = 292/424 (68%), Positives = 349/424 (82%)
Query: 270 PFRKDFPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQ 329
P R EI++Y +N GPQHPAAHGVLRL+LE++GE V +ADPH+GLLHR TEKLAE
Sbjct: 13 PMRDGRRDTEIRNYVMNLGPQHPAAHGVLRLVLEMDGETVVRADPHVGLLHRGTEKLAES 72
Query: 330 RTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMW 389
+ + QS+ YMDRLDYVSMMCNEHAYV AIE LL I+ PIRAQYIR MFDEITR+LNHLM
Sbjct: 73 KPFNQSIGYMDRLDYVSMMCNEHAYVRAIETLLGIEAPIRAQYIRTMFDEITRILNHLMN 132
Query: 390 IGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSS 449
IG+ +LD+GAM V+LYAFRERE+L+DCYEAVSGARMHA YYRPGGVYR+LPE MP+YK S
Sbjct: 133 IGTGALDLGAMAVMLYAFREREELMDCYEAVSGARMHATYYRPGGVYRELPEQMPKYKES 192
Query: 450 IIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPE 509
+ K + LN R+GSLLDFIE+FT FP IDEYETLLTDNRIWKQR VGIGVVSP+
Sbjct: 193 RWKTGKQLRRLNAAREGSLLDFIENFTREFPNRIDEYETLLTDNRIWKQRTVGIGVVSPQ 252
Query: 510 RALSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSN 569
+A+ G TG MLRGSGV WDLRKK+PY Y+ ++FDIP+G GD YDRYL R+ EMRQSN
Sbjct: 253 QAMEWGMTGVMLRGSGVAWDLRKKRPYAKYDAVDFDIPVGTAGDCYDRYLCRVAEMRQSN 312
Query: 570 KIIKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSC 629
+II+QC+ WLR+N GPV+ +N K+ P+R MKS+ME LIHHFKLF+EG+ VP GE Y+
Sbjct: 313 RIIRQCVDWLRANPGPVMLHNFKVAPPSRQEMKSDMEALIHHFKLFSEGYQVPAGETYAA 372
Query: 630 VEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFG 689
VE PKGEFG YL+SDGANKP+R+ +R+PGFAHL SL E++ GHM++DVV +IGT DIVFG
Sbjct: 373 VEAPKGEFGCYLISDGANKPFRVHLRAPGFAHLSSLDEIVRGHMLADVVAMIGTYDIVFG 432
Query: 690 EIDR 693
E+DR
Sbjct: 433 EVDR 436
>gi|380512340|ref|ZP_09855747.1| NADH dehydrogenase subunit D [Xanthomonas sacchari NCPPB 4393]
Length = 435
Score = 630 bits (1626), Expect = e-178, Method: Compositional matrix adjust.
Identities = 290/429 (67%), Positives = 349/429 (81%), Gaps = 3/429 (0%)
Query: 265 GFVGHPFRKDFPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATE 324
GF +P EI++Y +NFGPQHPAAHGVLRLILE++GE V +ADPHIGLLHR TE
Sbjct: 10 GFASNPAEAK---QEIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTE 66
Query: 325 KLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLL 384
KLAE + + QS+ YMDRLDYVSMMCNEHAYV AIE L+ I+ P RAQYIR MFDEITR+L
Sbjct: 67 KLAESKPFNQSIGYMDRLDYVSMMCNEHAYVRAIETLMGIEAPERAQYIRTMFDEITRIL 126
Query: 385 NHLMWIGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMP 444
NHLMW+GS+ LD+GAM V+LYAFRERE+L+D YEAVSGARMHA YYRPGGVYRDLP+ MP
Sbjct: 127 NHLMWVGSNGLDLGAMAVMLYAFREREELMDVYEAVSGARMHATYYRPGGVYRDLPDRMP 186
Query: 445 QYKSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIG 504
+Y+ S A K LN R+GS+LDF+E+FTN FP +DEYETLLTDNRIWKQR VGIG
Sbjct: 187 KYQESRWHKGNALKRLNAAREGSMLDFLEEFTNTFPARVDEYETLLTDNRIWKQRTVGIG 246
Query: 505 VVSPERALSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEE 564
VV+PE+A + G TG MLRGSG+ WDLRKKQPY Y+ ++FDIP+G NGD YDRYLVR+ E
Sbjct: 247 VVTPEQAYAWGMTGAMLRGSGIAWDLRKKQPYAKYDSVDFDIPLGTNGDCYDRYLVRVAE 306
Query: 565 MRQSNKIIKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLG 624
MRQSN+IIKQC++WL++N GPV+ N K+ P R MK +ME LIHHFKLF+EG+ VP G
Sbjct: 307 MRQSNRIIKQCVQWLKANPGPVMVENFKVAPPKRAEMKDDMEALIHHFKLFSEGYCVPAG 366
Query: 625 EIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQ 684
E Y VE PKGEFG YL+SDGANKP+R+ +R+PGFAHL S+ ++ GHM++DVV +IGT
Sbjct: 367 ETYCAVEAPKGEFGCYLMSDGANKPFRVHLRAPGFAHLSSMDAIVRGHMLADVVAMIGTY 426
Query: 685 DIVFGEIDR 693
D+VFGE+DR
Sbjct: 427 DLVFGEVDR 435
>gi|21243429|ref|NP_643011.1| NADH dehydrogenase subunit D [Xanthomonas axonopodis pv. citri str.
306]
gi|381171240|ref|ZP_09880388.1| NADH dehydrogenase (quinone), D subunit [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
gi|390990543|ref|ZP_10260827.1| NADH dehydrogenase (quinone), D subunit [Xanthomonas axonopodis pv.
punicae str. LMG 859]
gi|418517297|ref|ZP_13083462.1| NADH dehydrogenase subunit D [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
gi|418520408|ref|ZP_13086457.1| NADH dehydrogenase subunit D [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
gi|81801046|sp|Q8PJ43.1|NUOD_XANAC RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|21108982|gb|AAM37547.1| NADH-ubiquinone oxidoreductase NQO4 subunit [Xanthomonas axonopodis
pv. citri str. 306]
gi|372554746|emb|CCF67802.1| NADH dehydrogenase (quinone), D subunit [Xanthomonas axonopodis pv.
punicae str. LMG 859]
gi|380688309|emb|CCG36875.1| NADH dehydrogenase (quinone), D subunit [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
gi|410703789|gb|EKQ62277.1| NADH dehydrogenase subunit D [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
gi|410706023|gb|EKQ64488.1| NADH dehydrogenase subunit D [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
Length = 435
Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust.
Identities = 284/415 (68%), Positives = 348/415 (83%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRLILE++GE V +ADPHIGLLHR TEKLAE + + QS+PY
Sbjct: 21 EIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESKPFNQSVPY 80
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYV AIE L+ I+ P RAQYIR MFDEITR+ NHLMW+GS++LD+G
Sbjct: 81 MDRLDYVSMMCNEHAYVRAIESLMGIQAPERAQYIRTMFDEITRIKNHLMWVGSNALDLG 140
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V+LYAFRERE+L+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK S A K
Sbjct: 141 AMAVMLYAFREREELMDVYEAVSGARMHAAYYRPGGVYRDLPDRMPQYKESRWHKGGALK 200
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
N R+G++LDF+E+FTN FP +DEYETLLTDNRIWKQR V +G++SP+ A + G TG
Sbjct: 201 KRNAGREGTMLDFLEEFTNTFPARVDEYETLLTDNRIWKQRTVDVGIISPDLARAWGMTG 260
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG++WDLRKKQPY Y+ ++FDIP+G NGD YDRYLVR+ EMR+SN+IIKQC+KW
Sbjct: 261 PMLRGSGIEWDLRKKQPYAKYDAVDFDIPVGTNGDCYDRYLVRVAEMRESNRIIKQCVKW 320
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L++N GPV+ N K+ P+R MK +ME LIHHFKLF+EG+ VP GE YS VE PKGEFG
Sbjct: 321 LKANPGPVMVTNFKVAPPSREGMKDDMEALIHHFKLFSEGYCVPAGETYSAVEAPKGEFG 380
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YL+SDGANKP+R+ +R+PGFAHL S+ ++ G++++DVV +IGT D+VFGE+DR
Sbjct: 381 CYLMSDGANKPFRVHLRAPGFAHLSSMDAVVRGYLLADVVAMIGTYDLVFGEVDR 435
>gi|121998541|ref|YP_001003328.1| NADH dehydrogenase subunit D [Halorhodospira halophila SL1]
gi|229891395|sp|A1WXW4.1|NUOD_HALHL RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|121589946|gb|ABM62526.1| NADH dehydrogenase subunit D [Halorhodospira halophila SL1]
Length = 417
Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust.
Identities = 288/415 (69%), Positives = 346/415 (83%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
E +SY LNFGPQHPAAHGVLRL+LE+EGE VR+ADPHIGLLHRATEKLAE + Y QS+ Y
Sbjct: 3 EFQSYTLNFGPQHPAAHGVLRLVLEMEGEAVRRADPHIGLLHRATEKLAESKPYNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEH YV AIEKLL I+ P+RAQYIR M DE+TR+LNHLMW+G H LD+G
Sbjct: 63 MDRLDYVSMMCNEHGYVRAIEKLLGIEPPLRAQYIRTMMDEVTRILNHLMWLGGHGLDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM LY FREREDL+D YEAVSGARMHA YYRPGGV+RDLP+ MP+Y+ S R++K +
Sbjct: 123 AMTAFLYTFREREDLMDVYEAVSGARMHATYYRPGGVHRDLPDQMPKYEPSAYRSDKELR 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+N R+GS+LDF++DF RFP +DEYETLLT+NRIWKQRLV I VS ERA+ +GFTG
Sbjct: 183 EMNRAREGSVLDFLDDFCERFPACVDEYETLLTENRIWKQRLVDICPVSAERAVELGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
P+LRGSGV WDLRKKQPY Y+ ++FDIP+G NGDSYDRYLVR+EEMRQS +IIKQC+ W
Sbjct: 243 PLLRGSGVAWDLRKKQPYAAYDRVDFDIPVGVNGDSYDRYLVRVEEMRQSVRIIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPV ++ K+T P R MK +ME LIHHFKLFTEG+ P GE+Y+ VE PKGEFG
Sbjct: 303 LRANPGPVRIDDPKVTPPTREEMKDDMESLIHHFKLFTEGYCTPPGEVYAAVEAPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YL+SDGANKPYR+K+R P + HL + EMI G+M++DVVT+IG+ D+VFGE+DR
Sbjct: 363 VYLISDGANKPYRLKVRPPCYYHLAATDEMIRGYMLADVVTLIGSLDVVFGEVDR 417
>gi|325915542|ref|ZP_08177853.1| NADH dehydrogenase subunit D [Xanthomonas vesicatoria ATCC 35937]
gi|325538258|gb|EGD09943.1| NADH dehydrogenase subunit D [Xanthomonas vesicatoria ATCC 35937]
Length = 435
Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust.
Identities = 285/415 (68%), Positives = 348/415 (83%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRLILE++GE V +ADPHIGLLHR TEKLAE + + QS+PY
Sbjct: 21 EIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESKPFNQSVPY 80
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYV AIE L+ I+ P RAQYIR MFDEITR+ NHLMW+GS++LD+G
Sbjct: 81 MDRLDYVSMMCNEHAYVRAIESLMGIEAPERAQYIRTMFDEITRIKNHLMWVGSNALDLG 140
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V+LYAFRERE+L+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK S A K
Sbjct: 141 AMAVMLYAFREREELMDVYEAVSGARMHAAYYRPGGVYRDLPDRMPQYKESRWHKGGALK 200
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
N R+G+LLDF+E+FTN FP +DEYETLLTDNRIWKQR V +G++SP+ A + G TG
Sbjct: 201 KRNAGREGTLLDFLEEFTNTFPARVDEYETLLTDNRIWKQRTVDVGIISPDLARAWGMTG 260
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG++WDLRKKQPY Y+ ++FDIP+G NGD YDRYLVR+ EMR+SN+IIKQC+KW
Sbjct: 261 PMLRGSGIEWDLRKKQPYAKYDSVDFDIPVGTNGDCYDRYLVRVAEMRESNRIIKQCVKW 320
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L++N GPV+ N K+ P+R MK +ME LIHHFKLF+EG+ VP GE YS VE PKGEFG
Sbjct: 321 LKANPGPVMVTNFKVAPPSREGMKDDMEALIHHFKLFSEGYCVPAGETYSAVEAPKGEFG 380
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YL+SDGANKP+R+ +R+PGFAHL S+ ++ G++++DVV +IGT D+VFGE+DR
Sbjct: 381 CYLMSDGANKPFRVHLRAPGFAHLSSMDAVVRGYLLADVVAMIGTYDLVFGEVDR 435
>gi|78048406|ref|YP_364581.1| NADH dehydrogenase subunit D [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325924678|ref|ZP_08186116.1| NADH dehydrogenase subunit D [Xanthomonas perforans 91-118]
gi|346725524|ref|YP_004852193.1| NADH dehydrogenase subunit D [Xanthomonas axonopodis pv. citrumelo
F1]
gi|123584674|sp|Q3BRN2.1|NUOD_XANC5 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|78036836|emb|CAJ24529.1| NADH-ubiquinone oxidoreductase NQO4 subunit [Xanthomonas campestris
pv. vesicatoria str. 85-10]
gi|325544884|gb|EGD16229.1| NADH dehydrogenase subunit D [Xanthomonas perforans 91-118]
gi|346650271|gb|AEO42895.1| NADH dehydrogenase subunit D [Xanthomonas axonopodis pv. citrumelo
F1]
Length = 435
Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust.
Identities = 284/415 (68%), Positives = 348/415 (83%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRLILE++GE V +ADPHIGLLHR TEKLAE + + QS+PY
Sbjct: 21 EIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESKPFNQSVPY 80
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYV AIE L+ I+ P RAQYIR MFDEITR+ NHLMW+GS++LD+G
Sbjct: 81 MDRLDYVSMMCNEHAYVRAIESLMGIEAPERAQYIRTMFDEITRIKNHLMWVGSNALDLG 140
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V+LYAFRERE+L+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK S A K
Sbjct: 141 AMAVMLYAFREREELMDVYEAVSGARMHAAYYRPGGVYRDLPDRMPQYKESRWHKGGALK 200
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
N R+G++LDF+E+FTN FP +DEYETLLTDNRIWKQR V +G++SP+ A + G TG
Sbjct: 201 KRNAGREGTMLDFLEEFTNTFPARVDEYETLLTDNRIWKQRTVDVGIISPDLARAWGMTG 260
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG++WDLRKKQPY Y+ ++FDIP+G NGD YDRYLVR+ EMR+SN+IIKQC+KW
Sbjct: 261 PMLRGSGIEWDLRKKQPYAKYDAVDFDIPVGTNGDCYDRYLVRVAEMRESNRIIKQCVKW 320
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L++N GPV+ N K+ P+R MK +ME LIHHFKLF+EG+ VP GE YS VE PKGEFG
Sbjct: 321 LKANPGPVMVTNFKVAPPSREGMKDDMEALIHHFKLFSEGYCVPAGETYSAVEAPKGEFG 380
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YL+SDGANKP+R+ +R+PGFAHL S+ ++ G++++DVV +IGT D+VFGE+DR
Sbjct: 381 CYLMSDGANKPFRVHLRAPGFAHLSSMDAVVRGYLLADVVAMIGTYDLVFGEVDR 435
>gi|325921408|ref|ZP_08183265.1| NADH dehydrogenase subunit D [Xanthomonas gardneri ATCC 19865]
gi|325548166|gb|EGD19163.1| NADH dehydrogenase subunit D [Xanthomonas gardneri ATCC 19865]
Length = 435
Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust.
Identities = 285/415 (68%), Positives = 347/415 (83%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRLILE++GE V +ADPHIGLLHR TEKLAE + + QS+PY
Sbjct: 21 EIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESKPFNQSVPY 80
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYV AIE L+ I+ P RAQYIR MFDEITR+ NHLMW+GS++LD+G
Sbjct: 81 MDRLDYVSMMCNEHAYVRAIESLMGIEAPERAQYIRTMFDEITRIKNHLMWLGSNALDLG 140
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V+LYAFRERE+L+D YEAVSGARMHAAYYRPGGVYRDLP+ MP+YK S A K
Sbjct: 141 AMAVMLYAFREREELMDVYEAVSGARMHAAYYRPGGVYRDLPDRMPKYKESRWHKGGALK 200
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN R+GS+LDF+EDFTN FP +DEYETLLTDNRIWKQR V +G++SPE A + G TG
Sbjct: 201 KLNAAREGSMLDFLEDFTNTFPSRVDEYETLLTDNRIWKQRTVDVGIISPELARAWGMTG 260
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG++WDLRKKQPY Y+ ++FDIP+G NGD YDRYLVR+ EMR+SN+IIKQC+ W
Sbjct: 261 PMLRGSGIEWDLRKKQPYAKYDAVDFDIPVGTNGDCYDRYLVRVAEMRESNRIIKQCVTW 320
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L++N GPV+ N K+ P+R MK +ME LIHHFKLF+EG+ VP GE Y VE PKGEFG
Sbjct: 321 LKANPGPVMVTNFKVAPPSREGMKDDMEALIHHFKLFSEGYCVPAGETYCAVEAPKGEFG 380
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YL+SDGANKP+R+ +R+PGFAHL S+ ++ G++++DVV +IGT D+VFGE+DR
Sbjct: 381 CYLMSDGANKPFRLHLRAPGFAHLSSMDAVVRGYLLADVVAMIGTYDLVFGEVDR 435
>gi|294624675|ref|ZP_06703345.1| NADH dehydrogenase delta subunit [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292601031|gb|EFF45098.1| NADH dehydrogenase delta subunit [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
Length = 435
Score = 629 bits (1623), Expect = e-177, Method: Compositional matrix adjust.
Identities = 284/415 (68%), Positives = 347/415 (83%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRLILE++GE V +ADPHIGLLHR TEKLAE + + QS+PY
Sbjct: 21 EIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESKPFNQSVPY 80
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYV AIE L+ I+ P RAQYIR MFDEITR+ NHLMW+GS++LD+G
Sbjct: 81 MDRLDYVSMMCNEHAYVRAIESLMGIEAPERAQYIRTMFDEITRIKNHLMWVGSNALDLG 140
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V+LYAFRERE+L+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK S A K
Sbjct: 141 AMAVMLYAFREREELMDVYEAVSGARMHAAYYRPGGVYRDLPDRMPQYKESRWHKGGALK 200
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
N R+G++LDF+E+FTN FP +DEYETLLTDNRIWKQR V +G++SP+ A + G TG
Sbjct: 201 KRNAGREGTMLDFLEEFTNTFPARVDEYETLLTDNRIWKQRTVDVGIISPDLARAWGMTG 260
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPY Y+ ++FDIP+G NGD YDRYLVR+ EMR+SN+IIKQC+KW
Sbjct: 261 PMLRGSGIDWDLRKKQPYAKYDAVDFDIPVGTNGDCYDRYLVRVAEMRESNRIIKQCVKW 320
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L++N GPV+ N K+ P+R MK +ME LIHHFKLF+EG+ VP GE YS VE PKGEFG
Sbjct: 321 LKANPGPVMVTNFKVAPPSREGMKDDMEALIHHFKLFSEGYCVPAGETYSAVEAPKGEFG 380
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YL+SDGANKP+R+ +R+PGFAHL S+ ++ G++++DVV +IGT D+VFGE+DR
Sbjct: 381 CYLMSDGANKPFRVHLRAPGFAHLSSMDAVVRGYLLADVVAMIGTYDLVFGEVDR 435
>gi|285017795|ref|YP_003375506.1| NADH-quinone oxidoreductase chain d (nadh dehydrogenaseI chain d)
(ndh-1, chain d) (nuo4) oxidoreductase [Xanthomonas
albilineans GPE PC73]
gi|283473013|emb|CBA15518.1| probable nadh-quinone oxidoreductase chain d (nadh dehydrogenaseI
chain d) (ndh-1, chain d) (nuo4). oxidoreductase protein
[Xanthomonas albilineans GPE PC73]
Length = 435
Score = 629 bits (1622), Expect = e-177, Method: Compositional matrix adjust.
Identities = 287/415 (69%), Positives = 343/415 (82%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRLILE++GE V +ADPHIGLLHR TEKLAE + + QS+ Y
Sbjct: 21 EIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESKPFNQSIGY 80
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYV AIE L+ I+ P RAQYIR MFDEITR+LNHLMW+GS+ LD+G
Sbjct: 81 MDRLDYVSMMCNEHAYVRAIETLMGIEAPERAQYIRTMFDEITRILNHLMWVGSNGLDLG 140
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V+LYAFRERE+L+D YEAVSGARMHA YYRPGGVYRDLP+ MP+Y+ S A K
Sbjct: 141 AMAVMLYAFREREELMDAYEAVSGARMHATYYRPGGVYRDLPDRMPKYQESRWHKGNALK 200
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN R+GSLLDF+EDFTN FP +DEYETLLTDNRIWKQR VGIGVV+PE+A + G TG
Sbjct: 201 RLNAAREGSLLDFLEDFTNTFPGRVDEYETLLTDNRIWKQRTVGIGVVTPEQAYAWGMTG 260
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ WDLRKKQPY Y + FDIP+G NGD YDRYLVR+ EMR+SN+IIKQC++W
Sbjct: 261 VMLRGSGIAWDLRKKQPYAKYGSVQFDIPVGSNGDCYDRYLVRVAEMRESNRIIKQCVQW 320
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L++N GPV+ N K+ P R +MK +ME LIHHFKLF+EG+ VP GE Y VE PKGEFG
Sbjct: 321 LKANPGPVMVENFKVAPPKRADMKDDMEALIHHFKLFSEGYCVPAGETYCAVEAPKGEFG 380
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YL+SDGANKP+R+ +R+PGF HL S+ ++ GHM++DVV +IGT D+VFGE+DR
Sbjct: 381 CYLMSDGANKPFRVHLRAPGFVHLSSMDAIVRGHMLADVVAMIGTYDLVFGEVDR 435
>gi|383316680|ref|YP_005377522.1| NADH dehydrogenase I subunit D [Frateuria aurantia DSM 6220]
gi|379043784|gb|AFC85840.1| NADH dehydrogenase I, D subunit [Frateuria aurantia DSM 6220]
Length = 419
Score = 628 bits (1620), Expect = e-177, Method: Compositional matrix adjust.
Identities = 285/415 (68%), Positives = 346/415 (83%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRL+LE++GE V +ADPH+GLLHR TEKLAE + + QS+ Y
Sbjct: 5 EIRNYSMNFGPQHPAAHGVLRLVLEMDGETVVRADPHVGLLHRGTEKLAESKPFNQSIGY 64
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYV +IE LL I++P RAQYIR MFDEITR+LNHLMWIGS++LD+G
Sbjct: 65 MDRLDYVSMMCNEHAYVRSIETLLGIEVPERAQYIRTMFDEITRILNHLMWIGSNALDLG 124
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V+LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQY+ S K
Sbjct: 125 AMAVMLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDQMPQYRESPWHKGADLK 184
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN R+GS+LD+++ FT FPK +DEYE LLT+NRIWKQR VGIGV+SPE AL+ G TG
Sbjct: 185 RLNSWREGSMLDYLDAFTANFPKCVDEYEELLTNNRIWKQRTVGIGVISPETALAWGMTG 244
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG+ WDLRKKQPY Y ++FDIP+G NGD YDRYLVR+EEMRQSN+II+QC++W
Sbjct: 245 AMVRGSGMAWDLRKKQPYAKYAEMDFDIPVGVNGDCYDRYLVRVEEMRQSNRIIRQCVQW 304
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPVI+ N K+ P R MK NME LIHHFKLFTEG+ VP GE Y VE PKGEFG
Sbjct: 305 LRANPGPVIAQNYKVAPPRRAEMKDNMEALIHHFKLFTEGYGVPAGETYQAVEAPKGEFG 364
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
Y++SDGANKP+R+ +R+PGFAHL S+ ++ G+M++DVV ++GT D+VFGE+DR
Sbjct: 365 CYMISDGANKPFRVHLRAPGFAHLSSMDTIVRGYMLADVVAMVGTYDLVFGEVDR 419
>gi|389770630|ref|ZP_10192099.1| NADH dehydrogenase subunit D [Rhodanobacter sp. 115]
gi|388429664|gb|EIL86950.1| NADH dehydrogenase subunit D [Rhodanobacter sp. 115]
Length = 418
Score = 627 bits (1617), Expect = e-177, Method: Compositional matrix adjust.
Identities = 288/415 (69%), Positives = 342/415 (82%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRLI+E++GE + +ADPH+GLLHR TEKLAE + + QS+ Y
Sbjct: 4 EIRNYTMNFGPQHPAAHGVLRLIMEMDGETIVRADPHVGLLHRGTEKLAESKPFNQSIGY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYV AIE LL I+ P RAQYIR MFDEITR+LNHLMW+GS++LD+G
Sbjct: 64 MDRLDYVSMMCNEHAYVKAIENLLGIEAPERAQYIRTMFDEITRILNHLMWLGSNALDLG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFRERE+L+DCYEAVSGARMHA YYRPGGVYRDLP MPQY+ S K K
Sbjct: 124 AMAVFLYAFREREELMDCYEAVSGARMHATYYRPGGVYRDLPAQMPQYRESPWHKGKDLK 183
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN+ R+GS+LDF++ FT FP +DEYE LLT NRIWKQR VGIGVVSPE A + G TG
Sbjct: 184 RLNQWREGSMLDFLDAFTADFPTKVDEYEELLTTNRIWKQRTVGIGVVSPEHAQAWGMTG 243
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WDLRKKQPY Y ++FDIP+G NGD YDRYLVR+EEMRQSN+IIKQC++W
Sbjct: 244 AMLRGSGVAWDLRKKQPYAKYAEMDFDIPVGVNGDCYDRYLVRVEEMRQSNRIIKQCVQW 303
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPV+ N K+ P R MK +ME LIHHFKLFTEG+ VP GE Y+ VE PKGEFG
Sbjct: 304 LRANPGPVMVENYKVAPPKREEMKESMEALIHHFKLFTEGYGVPAGETYAAVEAPKGEFG 363
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDGANKP+R+ +R+PGFAHL S+ ++ GH+++DVV +IGT D+VFGE+DR
Sbjct: 364 CYLVSDGANKPFRVHLRAPGFAHLSSIDTIVRGHLLADVVAMIGTYDLVFGEVDR 418
>gi|167627156|ref|YP_001677656.1| NADH dehydrogenase subunit D [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|229891390|sp|B0TWP7.1|NUOD_FRAP2 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|167597157|gb|ABZ87155.1| NADH dehydrogenase (ubiquinone) [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 417
Score = 624 bits (1610), Expect = e-176, Method: Compositional matrix adjust.
Identities = 281/415 (67%), Positives = 347/415 (83%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
E K+Y LNFGP HPAAHGVLRLILEL+GE V +ADPH+GLLHR TEKLAE + Y QS+ Y
Sbjct: 3 EYKNYTLNFGPVHPAAHGVLRLILELDGETVVRADPHVGLLHRGTEKLAEFKPYNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIEKLL +++P RAQYIRVMF E+TR+LNHL+W+ + +D+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEKLLELEVPERAQYIRVMFAEMTRILNHLLWVAACGIDLG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFR REDL DCYEAVSGARMHAAY+RPGGV RDLP MPQYK + + + TK
Sbjct: 123 AMTVFLYAFRVREDLFDCYEAVSGARMHAAYFRPGGVARDLPTQMPQYKQTRFTSKRKTK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+N NRQGS+LDF++ F F K++DE +TLLTDNR+WKQR V IGVV+ ERA+ +GFTG
Sbjct: 183 KINANRQGSMLDFLDSFVVDFDKSLDEIDTLLTDNRLWKQRTVDIGVVTAERAVELGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV WDLRK QPYE+Y+ L+FDIP+G NGD YDRYLVR+ EMR+SNK+IKQC+ W
Sbjct: 243 PMLRGSGVAWDLRKSQPYEVYDKLDFDIPVGANGDCYDRYLVRMAEMRESNKLIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N+GPV+S+N+K+ P R MK+NME+LIHHFKLF+EG+ P GE+Y EHPKGEFG
Sbjct: 303 LRANQGPVLSDNHKVAPPKRNAMKNNMEELIHHFKLFSEGYCTPEGEVYVGTEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+ SDGANKPYR+K+++PGF H+ ++ E++SGHM++D II T D+VFG++DR
Sbjct: 363 VYIKSDGANKPYRLKMKAPGFTHISAMDELLSGHMLADTPAIISTIDVVFGDVDR 417
>gi|357417085|ref|YP_004930105.1| NADH dehydrogenase subunit D [Pseudoxanthomonas spadix BD-a59]
gi|355334663|gb|AER56064.1| NADH dehydrogenase subunit D [Pseudoxanthomonas spadix BD-a59]
Length = 436
Score = 624 bits (1609), Expect = e-176, Method: Compositional matrix adjust.
Identities = 282/415 (67%), Positives = 343/415 (82%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRLILE++GE + +ADPHIGLLHR TEKLAE + + QS+ Y
Sbjct: 22 EIRNYTMNFGPQHPAAHGVLRLILEMDGETIVRADPHIGLLHRGTEKLAESKPFNQSIGY 81
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYV+AIEKL+ I+ P RAQYIR MFDEITR+LNHLMW+GS++LD+G
Sbjct: 82 MDRLDYVSMMCNEHAYVLAIEKLMGIQAPERAQYIRTMFDEITRILNHLMWLGSNALDLG 141
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V+LY FRERE+L+DCYEAVSGARMHA YYRPGGVYRDLP MP+YK S + K
Sbjct: 142 AMAVMLYCFREREELMDCYEAVSGARMHATYYRPGGVYRDLPSQMPKYKESPWHKGASLK 201
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+N R+GSLLDF+EDFT FP +DEYETLLTDNRIWKQR VGIGV++P++A + G TG
Sbjct: 202 RINAAREGSLLDFLEDFTRTFPSRVDEYETLLTDNRIWKQRTVGIGVITPDQARAWGMTG 261
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGS ++WDLR+KQPY Y+ + FDIP+G NGD YDRYLVR+ EMRQSN+II QC+KW
Sbjct: 262 VMLRGSQIEWDLRRKQPYAKYDAMEFDIPVGMNGDCYDRYLVRVAEMRQSNRIIAQCVKW 321
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L++N GPV+ N K+ P R MK +ME LIHHFKLF+EG+ VP GE Y+ +E PKGEFG
Sbjct: 322 LKANPGPVMVENFKVAPPRREAMKDDMEALIHHFKLFSEGYCVPAGETYTAIEAPKGEFG 381
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDGANKP+R+ +R+PGF HL S+ ++ GHM+ DVV +IGT D+VFGE+DR
Sbjct: 382 CYLVSDGANKPFRVHLRAPGFVHLSSMDAIVVGHMLPDVVAMIGTYDLVFGEVDR 436
>gi|21231957|ref|NP_637874.1| NADH dehydrogenase subunit D [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66767916|ref|YP_242678.1| NADH dehydrogenase subunit D [Xanthomonas campestris pv. campestris
str. 8004]
gi|188991032|ref|YP_001903042.1| NADH dehydrogenase subunit D [Xanthomonas campestris pv. campestris
str. B100]
gi|384428479|ref|YP_005637839.1| NADH dehydrogenase i, d subunit [Xanthomonas campestris pv. raphani
756C]
gi|81306107|sp|Q4UWB5.1|NUOD_XANC8 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|81793543|sp|Q8P7T5.1|NUOD_XANCP RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|229891306|sp|B0RRA1.1|NUOD_XANCB RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|21113688|gb|AAM41798.1| NADH-ubiquinone oxidoreductase NQO4 subunit [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gi|66573248|gb|AAY48658.1| NADH-ubiquinone oxidoreductase NQO4 subunit [Xanthomonas campestris
pv. campestris str. 8004]
gi|167732792|emb|CAP50986.1| NADH-ubiquinone oxidoreductase NQO4 subunit [Xanthomonas campestris
pv. campestris]
gi|341937582|gb|AEL07721.1| NADH dehydrogenase i, d subunit [Xanthomonas campestris pv. raphani
756C]
Length = 435
Score = 624 bits (1608), Expect = e-176, Method: Compositional matrix adjust.
Identities = 280/415 (67%), Positives = 347/415 (83%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRLILE++GE V +ADPHIGLLHR TEKLAE + + QS+PY
Sbjct: 21 EIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESKPFNQSVPY 80
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYV AIE L+ I+ P RAQYIR MFDEITR+ NHLMW+GS++LD+G
Sbjct: 81 MDRLDYVSMMCNEHAYVRAIESLMGIEAPERAQYIRTMFDEITRIKNHLMWVGSNALDLG 140
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V+LYAFRERE+L+D YEAVSGARMHAAYYRPGGVYRDLP+ MP+YK S A
Sbjct: 141 AMAVMLYAFREREELMDVYEAVSGARMHAAYYRPGGVYRDLPDRMPKYKESRWHKGGALT 200
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN R+GS+LDF+E+FT+ FP +DEYETLLT+NRIWKQR V +G++SP+ A + G TG
Sbjct: 201 KLNAAREGSMLDFLENFTDTFPSRVDEYETLLTENRIWKQRTVDVGIISPDLARAWGMTG 260
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG++WDLRKKQPY Y+ ++FD+P+G NGD YDRYLVR+ EMR+SN+IIKQC+KW
Sbjct: 261 PMLRGSGIEWDLRKKQPYAKYDAVDFDVPVGTNGDCYDRYLVRVAEMRESNRIIKQCVKW 320
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L++N GPV+ N K+ P+R MK +ME LIHHFKLF+EG+ VP GE Y VE PKGEFG
Sbjct: 321 LKANPGPVMVTNFKVAPPSREGMKDDMEALIHHFKLFSEGYCVPAGETYCAVEAPKGEFG 380
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YL+SDGANKP+R+ +R+PGFAHL S+ ++ G++++DVV +IGT D+VFGE+DR
Sbjct: 381 CYLMSDGANKPFRVHLRAPGFAHLSSMDAVVRGYLLADVVAMIGTYDLVFGEVDR 435
>gi|254876262|ref|ZP_05248972.1| NADH dehydrogenase subunit D [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254842283|gb|EET20697.1| NADH dehydrogenase subunit D [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 417
Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust.
Identities = 280/415 (67%), Positives = 345/415 (83%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
E K+Y LNFGP HPAAHGVLRLILEL+GE V +ADPH+GLLHR TEKLAE + Y QS+ Y
Sbjct: 3 EYKNYTLNFGPVHPAAHGVLRLILELDGETVVRADPHVGLLHRGTEKLAEFKPYNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIEKLL +++P RAQYIRVMF E+TR+LNHL+W+ + +D+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEKLLELEVPERAQYIRVMFAEMTRILNHLLWVAACGIDLG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFR REDL DCYEAVSGARMHAAY+RPGGV RDLP MPQYK + + + TK
Sbjct: 123 AMTVFLYAFRVREDLFDCYEAVSGARMHAAYFRPGGVARDLPTQMPQYKQTRFTSKRKTK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+N NRQG +LDF++ F F K++DE +TLLTDNR+WKQR V IGVV+ ERA+ +GFTG
Sbjct: 183 KINANRQGGMLDFLDSFVVDFDKSLDEIDTLLTDNRLWKQRTVDIGVVTAERAVELGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV WDLRK QPYE+Y+ L+FDIP+G NGD YDRYLVR+ EMR+SNK+IKQC+ W
Sbjct: 243 PMLRGSGVAWDLRKSQPYEVYDKLDFDIPVGANGDCYDRYLVRMAEMRESNKLIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPV+S+N+K+ P R MK+NME+LIHHFKLF+EG+ P GE+Y EHPKGEFG
Sbjct: 303 LRANPGPVLSDNHKVAPPKRNAMKNNMEELIHHFKLFSEGYCTPEGEVYVGTEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+ SDGANKPYR+K+++PGF H+ ++ E++SGHM++D II T D+VFG++DR
Sbjct: 363 VYIKSDGANKPYRLKMKAPGFTHISAMDELLSGHMLADTPAIISTIDVVFGDVDR 417
>gi|337754550|ref|YP_004647061.1| NADH-ubiquinone oxidoreductase subunit D [Francisella sp. TX077308]
gi|336446155|gb|AEI35461.1| NADH-ubiquinone oxidoreductase chain D [Francisella sp. TX077308]
Length = 417
Score = 620 bits (1598), Expect = e-174, Method: Compositional matrix adjust.
Identities = 280/415 (67%), Positives = 345/415 (83%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
E K+Y LNFGP HPAAHGVLRLILEL+GE V +ADPH+GLLHR TEKLAE + Y QS+ Y
Sbjct: 3 EYKNYTLNFGPVHPAAHGVLRLILELDGETVVRADPHVGLLHRGTEKLAEFKPYNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIEKLL +++P RAQYIRVMF E+TR+LNHL+W+ + +D+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEKLLELEVPERAQYIRVMFAEMTRILNHLLWVAACGIDLG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFR REDL DCYEAVSGARMHAAY+RPGGV RDLP MPQYK + + + TK
Sbjct: 123 AMTVFLYAFRVREDLFDCYEAVSGARMHAAYFRPGGVARDLPTQMPQYKQTRFTSKRKTK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+N NRQGS+LDF++ F F K++DE +TLLTDNR+WKQR V IGVV+ ERA+ +GFTG
Sbjct: 183 KINANRQGSMLDFLDSFVVDFDKSLDEIDTLLTDNRLWKQRTVDIGVVTAERAVELGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV WDLRK QPYE+Y+ L+FDIP+G NGD YDRYLVR+ EMR+SNK+IKQC+ W
Sbjct: 243 PMLRGSGVAWDLRKSQPYEVYDKLDFDIPVGANGDCYDRYLVRMAEMRESNKLIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N G V+S+N+K+ P R MK+NME+LIHHFKLF+EG+ P GE+Y EHPKGEFG
Sbjct: 303 LRANPGSVLSDNHKVAPPKRNAMKNNMEELIHHFKLFSEGYCTPEGEVYVGTEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+ SDGANKPYR+K+++PGF H+ ++ E++SGHM++D II T D+VFG++DR
Sbjct: 363 VYIKSDGANKPYRLKMKAPGFTHISAMDELLSGHMLADTPAIISTIDVVFGDVDR 417
>gi|28198174|ref|NP_778488.1| NADH dehydrogenase subunit D [Xylella fastidiosa Temecula1]
gi|182680808|ref|YP_001828968.1| NADH dehydrogenase subunit D [Xylella fastidiosa M23]
gi|386084329|ref|YP_006000611.1| NADH dehydrogenase subunit D [Xylella fastidiosa subsp. fastidiosa
GB514]
gi|81725065|sp|Q87EQ2.1|NUOD_XYLFT RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|229891307|sp|B2I787.1|NUOD_XYLF2 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|28056244|gb|AAO28137.1| NADH-ubiquinone oxidoreductase NQO4 subunit [Xylella fastidiosa
Temecula1]
gi|182630918|gb|ACB91694.1| NADH dehydrogenase I, D subunit [Xylella fastidiosa M23]
gi|307579276|gb|ADN63245.1| NADH dehydrogenase subunit D [Xylella fastidiosa subsp. fastidiosa
GB514]
Length = 435
Score = 620 bits (1598), Expect = e-174, Method: Compositional matrix adjust.
Identities = 282/415 (67%), Positives = 344/415 (82%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRLILE++GE V +ADPHIGLLHR TEKLAE + + QS+ Y
Sbjct: 21 EIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESKPFNQSIGY 80
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYV AIE L+ I+ P RAQYIR MFDEITR+LNHLMW+GS++LD+G
Sbjct: 81 MDRLDYVSMMCNEHAYVRAIETLIGIQAPERAQYIRTMFDEITRILNHLMWLGSNALDLG 140
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V+LYAFRERE+L+D YEA+SGARMHAAYYRPGGVYRDLP+ MP+YK S KA K
Sbjct: 141 AMAVMLYAFREREELMDVYEAISGARMHAAYYRPGGVYRDLPDTMPKYKESRWHKGKALK 200
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN R+GS+LDF+E FT+ FP+ IDEYETLLTDNRIWKQR VG+GV+ P+ A + G TG
Sbjct: 201 RLNAAREGSMLDFLEHFTDTFPQRIDEYETLLTDNRIWKQRTVGVGVIEPDVAKAWGMTG 260
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ WDLRKKQPY Y+ ++FDIP+G GD YDRYL R+ EMR+SN+IIKQC++W
Sbjct: 261 VMLRGSGIAWDLRKKQPYAKYDAVDFDIPLGTCGDCYDRYLCRVAEMRESNRIIKQCVQW 320
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L+ N G V+ N K+ P R +MK +ME LIHHFKLF+EG+ VP GE YS VE PKGEFG
Sbjct: 321 LKMNPGQVMVENCKVAPPKRESMKDDMEALIHHFKLFSEGYCVPAGETYSAVEAPKGEFG 380
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YL+SDGANKP+R+ +R+PGFAHL S+ ++ G+M++DVV +IGT D+VFGE+DR
Sbjct: 381 CYLISDGANKPFRVHLRAPGFAHLSSMDAVVRGYMLADVVAMIGTYDLVFGEVDR 435
>gi|71275687|ref|ZP_00651972.1| NADH dehydrogenase I, D subunit [Xylella fastidiosa Dixon]
gi|170729492|ref|YP_001774925.1| NADH dehydrogenase subunit D [Xylella fastidiosa M12]
gi|229891308|sp|B0U1W8.1|NUOD_XYLFM RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|71163578|gb|EAO13295.1| NADH dehydrogenase I, D subunit [Xylella fastidiosa Dixon]
gi|71732412|gb|EAO34466.1| NADH dehydrogenase I, D subunit [Xylella fastidiosa Ann-1]
gi|167964285|gb|ACA11295.1| NADH dehydrogenase [Xylella fastidiosa M12]
Length = 435
Score = 619 bits (1597), Expect = e-174, Method: Compositional matrix adjust.
Identities = 282/415 (67%), Positives = 344/415 (82%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRLILE++GE V +ADPHIGLLHR TEKLAE + + QS+ Y
Sbjct: 21 EIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESKPFNQSIGY 80
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYV AIE L+ I+ P RAQYIR MFDEITR+LNHLMW+GS++LD+G
Sbjct: 81 MDRLDYVSMMCNEHAYVRAIETLIGIQAPERAQYIRTMFDEITRILNHLMWLGSNALDLG 140
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V+LYAFRERE+L+D YEA+SGARMHAAYYRPGGVYRDLP+ MP+YK S KA K
Sbjct: 141 AMAVMLYAFREREELMDVYEAISGARMHAAYYRPGGVYRDLPDTMPKYKQSRWHKGKALK 200
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN R+GS+LDF+E FT+ FP+ IDEYETLLTDNRIWKQR VG+GV+ P+ A + G TG
Sbjct: 201 RLNAAREGSMLDFLEHFTDTFPQRIDEYETLLTDNRIWKQRTVGVGVIEPDVAKAWGMTG 260
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ WDLRKKQPY Y+ ++FDIP+G GD YDRYL R+ EMR+SN+IIKQC++W
Sbjct: 261 VMLRGSGIAWDLRKKQPYAKYDAVDFDIPLGTCGDCYDRYLCRVAEMRESNRIIKQCVQW 320
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L+ N G V+ N K+ P R +MK +ME LIHHFKLF+EG+ VP GE YS VE PKGEFG
Sbjct: 321 LKVNPGQVMVENFKVAPPKRESMKDDMEALIHHFKLFSEGYCVPAGETYSAVEAPKGEFG 380
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YL+SDGANKP+R+ +R+PGFAHL S+ ++ G+M++DVV +IGT D+VFGE+DR
Sbjct: 381 CYLISDGANKPFRVHLRAPGFAHLSSMDAVVRGYMLADVVAMIGTYDLVFGEVDR 435
>gi|71732324|gb|EAO34378.1| NADH dehydrogenase I, D subunit [Xylella fastidiosa Ann-1]
Length = 435
Score = 619 bits (1597), Expect = e-174, Method: Compositional matrix adjust.
Identities = 282/415 (67%), Positives = 345/415 (83%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRLILE++GE V +ADPHIGLLHR TEKLAE + + QS+ Y
Sbjct: 21 EIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESKPFNQSIGY 80
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYV AIE L+ I++P RAQYIR MFDEITR+LNHLMW+GS++LD+G
Sbjct: 81 MDRLDYVSMMCNEHAYVRAIETLIGIQVPERAQYIRTMFDEITRILNHLMWLGSNALDLG 140
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V+LYAFRERE+L+D YEA+SGARMHAAYYRPGGVYRDLP+ MP+YK S KA K
Sbjct: 141 AMAVMLYAFREREELMDVYEAISGARMHAAYYRPGGVYRDLPDTMPKYKQSRWHKGKALK 200
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN R+GS+LDF+E FT+ FP+ IDEYETLLTDNRIWKQR VG+GV+ P+ A + G TG
Sbjct: 201 RLNAAREGSMLDFLEHFTDTFPQRIDEYETLLTDNRIWKQRTVGVGVIEPDVAKAWGMTG 260
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ WDLRKKQPY Y+ ++FDIP+G GD YDRYL R+ EMR+SN+IIKQC++W
Sbjct: 261 VMLRGSGIAWDLRKKQPYAKYDAVDFDIPLGTCGDCYDRYLCRVAEMRESNRIIKQCVQW 320
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L+ N G V+ N K+ P R +MK +ME LIHHFKLF+EG+ VP GE YS VE PKGEFG
Sbjct: 321 LKVNPGQVMVENFKVAPPKRESMKDDMEALIHHFKLFSEGYCVPAGETYSAVEAPKGEFG 380
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YL+SDGANKP+R+ +R+PGFAHL S+ ++ G+M++DVV +IGT D+VFGE+DR
Sbjct: 381 CYLISDGANKPFRVHLRAPGFAHLSSMDAVVRGYMLADVVAMIGTYDLVFGEVDR 435
>gi|389807690|ref|ZP_10204227.1| NADH dehydrogenase subunit D [Rhodanobacter thiooxydans LCS2]
gi|388443815|gb|EIL99950.1| NADH dehydrogenase subunit D [Rhodanobacter thiooxydans LCS2]
Length = 417
Score = 619 bits (1596), Expect = e-174, Method: Compositional matrix adjust.
Identities = 284/415 (68%), Positives = 339/415 (81%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRLI+E++GE + + DPH+GLLHR TEKLAE + + QS+ Y
Sbjct: 3 EIRNYTMNFGPQHPAAHGVLRLIMEMDGETIVRVDPHVGLLHRGTEKLAESKPFNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYV AIE LL I+ P RAQYIR MFDEITR+LNHLMWIGS++LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYVRAIETLLGIEAPERAQYIRTMFDEITRILNHLMWIGSNALDLG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V+LYAFRERE+L+D YEAVSGARMHA YYRPGGVYRDLP M QY+ S K
Sbjct: 123 AMAVMLYAFREREELMDVYEAVSGARMHATYYRPGGVYRDLPAQMSQYRESPWHKGADLK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+N R+GS+LDF++ FT FP +DEYE LLT NRIWKQR VGIGVVSPE A G TG
Sbjct: 183 RINSWREGSMLDFLDAFTADFPSKVDEYEVLLTTNRIWKQRTVGIGVVSPELAQQWGMTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WDLRKKQPY Y ++FDIP+G NGD YDRYLVR+EEMRQSN+II+QC++W
Sbjct: 243 AMLRGSGVEWDLRKKQPYAKYAEMDFDIPVGVNGDCYDRYLVRVEEMRQSNRIIRQCVEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPV+ N K+ P+R+ MK +ME LIHHFKLFTEG+ VP GE Y VE PKGEFG
Sbjct: 303 LRANPGPVMVKNFKVAPPSRVEMKQDMEALIHHFKLFTEGYCVPAGETYCAVEAPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDGANKP+R+ +R+PGFAHL S+ ++ GHM++DVV +IGT D+VFGE+DR
Sbjct: 363 CYLVSDGANKPFRVHLRAPGFAHLSSMDTLVRGHMLADVVAMIGTYDLVFGEVDR 417
>gi|15836911|ref|NP_297599.1| NADH dehydrogenase subunit D [Xylella fastidiosa 9a5c]
gi|81788888|sp|Q9PGJ2.1|NUOD_XYLFA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|9105131|gb|AAF83119.1|AE003884_4 NADH-ubiquinone oxidoreductase, NQO4 subunit [Xylella fastidiosa
9a5c]
Length = 435
Score = 618 bits (1594), Expect = e-174, Method: Compositional matrix adjust.
Identities = 282/415 (67%), Positives = 343/415 (82%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRLILE++GE V +ADPHIGLLHR TEKLAE + + QS+ Y
Sbjct: 21 EIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESKPFNQSIGY 80
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYV AIE L+ I+ P RAQYIR MFDEITR+LNHLMW+GS++LD+G
Sbjct: 81 MDRLDYVSMMCNEHAYVRAIETLIGIQAPERAQYIRTMFDEITRILNHLMWLGSNALDLG 140
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V+LYAFRERE+L+D YEA+SGARMHAAYYRPGGVYRDLP+ MP+YK S KA K
Sbjct: 141 AMAVMLYAFREREELMDVYEAISGARMHAAYYRPGGVYRDLPDTMPKYKQSRWHKGKALK 200
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN R+GS+LDF+E F + FP+ IDEYETLLTDNRIWKQR VG+GV+ P+ A + G TG
Sbjct: 201 RLNAAREGSMLDFLEHFADTFPQRIDEYETLLTDNRIWKQRTVGVGVIEPDVAKAWGMTG 260
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WDLRKKQPY Y+ ++FDIP+G GD YDRYL R+ EMR+SN+IIKQC++W
Sbjct: 261 VMLRGSGVAWDLRKKQPYAKYDAVDFDIPLGTCGDCYDRYLCRVAEMRESNRIIKQCVQW 320
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L+ N G V+ N K+ P R +MK +ME LIHHFKLF+EG+ VP GE YS VE PKGEFG
Sbjct: 321 LKVNPGQVMVENFKVAPPKRESMKDDMEALIHHFKLFSEGYCVPAGETYSAVEAPKGEFG 380
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YL+SDGANKP+R+ +R+PGFAHL S+ ++ G+M++DVV +IGT D+VFGE+DR
Sbjct: 381 CYLISDGANKPFRVHLRAPGFAHLSSMDAVVRGYMLADVVAMIGTYDLVFGEVDR 435
>gi|389798936|ref|ZP_10201944.1| NADH dehydrogenase subunit D [Rhodanobacter sp. 116-2]
gi|388444291|gb|EIM00411.1| NADH dehydrogenase subunit D [Rhodanobacter sp. 116-2]
Length = 417
Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust.
Identities = 283/415 (68%), Positives = 341/415 (82%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRLI+E++GE + +ADPH+GLLHR TEKLAE + + QS+ Y
Sbjct: 3 EIRNYTMNFGPQHPAAHGVLRLIMEMDGETIVRADPHVGLLHRGTEKLAESKPFNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYV AIE LL ++ P RAQYIR MFDEITR+LNHLMWIGS++LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYVRAIETLLGVEAPERAQYIRTMFDEITRILNHLMWIGSNALDLG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V+LYAFRERE+L+D YEAVSGARMHA YYRPGGVYRDLP+ M +Y+ S K
Sbjct: 123 AMAVILYAFREREELMDVYEAVSGARMHATYYRPGGVYRDLPDQMSKYRESPWHKGSDLK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+N R+GS+LDF++ FT FP +DEYE LLT NRIWKQR VGIGVVSPE A G TG
Sbjct: 183 RINSWREGSMLDFLDAFTADFPSKVDEYEELLTTNRIWKQRTVGIGVVSPELAQQWGMTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WDLRKKQPY Y ++FDIP+G NGD YDRYLVR+EEMRQSN+II+QC++W
Sbjct: 243 AMLRGSGVEWDLRKKQPYAKYAEMDFDIPVGVNGDCYDRYLVRVEEMRQSNRIIRQCVEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPV+ N K+ P+R+ MK +ME LIHHFKLFTEG+ VP GE Y VE PKGEFG
Sbjct: 303 LRANPGPVMVKNFKVAPPSRVEMKQDMEALIHHFKLFTEGYCVPAGETYCAVEAPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDGANKP+R+ +R+PGFAHL S+ ++ GHM++DVV +IGT D+VFGE+DR
Sbjct: 363 CYLVSDGANKPFRVHLRAPGFAHLSSMDTIVRGHMLADVVAMIGTYDLVFGEVDR 417
>gi|352081353|ref|ZP_08952231.1| NADH dehydrogenase I, D subunit [Rhodanobacter sp. 2APBS1]
gi|351683394|gb|EHA66478.1| NADH dehydrogenase I, D subunit [Rhodanobacter sp. 2APBS1]
Length = 419
Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust.
Identities = 283/415 (68%), Positives = 341/415 (82%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRLI+E++GE + +ADPH+GLLHR TEKLAE + + QS+ Y
Sbjct: 5 EIRNYTMNFGPQHPAAHGVLRLIMEMDGETIVRADPHVGLLHRGTEKLAESKPFNQSIGY 64
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYV AIE LL ++ P RAQYIR MFDEITR+LNHLMWIGS++LD+G
Sbjct: 65 MDRLDYVSMMCNEHAYVRAIETLLGVEAPERAQYIRTMFDEITRILNHLMWIGSNALDLG 124
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V+LYAFRERE+L+D YEAVSGARMHA YYRPGGVYRDLP+ M +Y+ S K
Sbjct: 125 AMAVILYAFREREELMDVYEAVSGARMHATYYRPGGVYRDLPDQMSKYRESPWHKGSDLK 184
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+N R+GS+LDF++ FT FP +DEYE LLT NRIWKQR VGIGVVSPE A G TG
Sbjct: 185 RINSWREGSMLDFLDAFTADFPSKVDEYEELLTTNRIWKQRTVGIGVVSPELAQQWGMTG 244
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WDLRKKQPY Y ++FDIP+G NGD YDRYLVR+EEMRQSN+II+QC++W
Sbjct: 245 AMLRGSGVEWDLRKKQPYAKYAEMDFDIPVGVNGDCYDRYLVRVEEMRQSNRIIRQCVEW 304
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPV+ N K+ P+R+ MK +ME LIHHFKLFTEG+ VP GE Y VE PKGEFG
Sbjct: 305 LRANPGPVMVKNFKVAPPSRVEMKQDMEALIHHFKLFTEGYCVPAGETYCAVEAPKGEFG 364
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDGANKP+R+ +R+PGFAHL S+ ++ GHM++DVV +IGT D+VFGE+DR
Sbjct: 365 CYLVSDGANKPFRVHLRAPGFAHLSSMDTIVRGHMLADVVAMIGTYDLVFGEVDR 419
>gi|389774723|ref|ZP_10192842.1| NADH dehydrogenase subunit D [Rhodanobacter spathiphylli B39]
gi|388438322|gb|EIL95077.1| NADH dehydrogenase subunit D [Rhodanobacter spathiphylli B39]
Length = 417
Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust.
Identities = 281/415 (67%), Positives = 341/415 (82%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRLI+E++GE + +ADPH+GLLHR TEKLAE + + QS+ Y
Sbjct: 3 EIRNYTMNFGPQHPAAHGVLRLIMEMDGETIVRADPHVGLLHRGTEKLAESKPFNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYV +IE LL I+ P RAQYIR MFDEITR+LNHLMWIGS++LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYVRSIETLLGIEAPERAQYIRTMFDEITRILNHLMWIGSNALDLG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V+LYAFRERE+L+D YEAVSGARMHA YYRPGGVYRDLPE M +Y+ S K
Sbjct: 123 AMAVILYAFREREELMDVYEAVSGARMHATYYRPGGVYRDLPEQMSKYRESPWHKGADLK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+N R+GS+LD++E FT FP +DEYE LLT NRIWKQR VGIGV+SPE A G TG
Sbjct: 183 RINSWREGSMLDYLEAFTADFPSKVDEYEELLTTNRIWKQRTVGIGVISPELAQQWGMTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WDLRKKQPY Y ++FDIP+G NGD YDRYLVR+EEMRQSN+II+QC++W
Sbjct: 243 AMLRGSGVEWDLRKKQPYAKYAEMDFDIPVGVNGDCYDRYLVRVEEMRQSNRIIRQCVQW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L++N GPV+ N K+ P+R+ MK +ME +IHHFKLFTEG+ VP GE Y VE PKGEFG
Sbjct: 303 LKANPGPVMVKNFKVAPPSRVEMKEDMEAMIHHFKLFTEGYCVPAGETYCAVEAPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDGANKP+R+ +R+PGFAHL S+ ++ GHM++DVV +IGT D+VFGE+DR
Sbjct: 363 CYLVSDGANKPFRVHLRAPGFAHLSSMDTIVRGHMLADVVAMIGTYDLVFGEVDR 417
>gi|387825327|ref|YP_005824798.1| NADH-ubiquinone oxidoreductase subunit D [Francisella cf. novicida
3523]
gi|332184793|gb|AEE27047.1| NADH-ubiquinone oxidoreductase chain D [Francisella cf. novicida
3523]
Length = 417
Score = 616 bits (1589), Expect = e-173, Method: Compositional matrix adjust.
Identities = 282/415 (67%), Positives = 344/415 (82%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
E K+Y LNFGP HPAAHGVLRLILEL+GE V +ADPH+GLLHR TEKLAE + Y QS+ Y
Sbjct: 3 EYKNYTLNFGPVHPAAHGVLRLILELDGENVVRADPHVGLLHRGTEKLAEFKPYNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIEKLL +++P RA+YIRVMF E+TR+LNHL+W+ + +D+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEKLLQLEVPERAKYIRVMFAEMTRILNHLLWVAACGIDLG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFR REDL DCYEAVSGARMHAAY+RPGGV RDLP MPQY+ + + + K
Sbjct: 123 AMTVFLYAFRVREDLFDCYEAVSGARMHAAYFRPGGVARDLPTQMPQYQKTRFTSKRKAK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE RQGS+LDF++ F F K++DE +TLLTDNR+WKQR V IGVVS +RA +GFTG
Sbjct: 183 KLNEPRQGSMLDFLDHFVVDFEKSLDEIDTLLTDNRLWKQRTVDIGVVSAKRAKELGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV WDLRK QPYE+Y+ L FDIPIG NGD YDRYLVR+ EMR+SNK+IKQC+ W
Sbjct: 243 PMLRGSGVAWDLRKTQPYEVYDKLEFDIPIGANGDCYDRYLVRMAEMRESNKLIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPV+S+N+K+ P R MK+NME+LIHHFKLF+EG+ P GE+Y EHPKGEFG
Sbjct: 303 LRANPGPVLSDNHKVAPPKRNAMKNNMEELIHHFKLFSEGYCTPEGEVYVGTEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+ SDGANKPYR+K+R+PGFAH+ ++ E++SGHM++D II T D+VFG++DR
Sbjct: 363 VYIKSDGANKPYRLKMRAPGFAHISAMDELLSGHMLADTPAIISTIDVVFGDVDR 417
>gi|118498238|ref|YP_899288.1| NADH dehydrogenase subunit D [Francisella novicida U112]
gi|194324422|ref|ZP_03058195.1| NADH dehydrogenase i, d subunit [Francisella novicida FTE]
gi|208780265|ref|ZP_03247607.1| NADH dehydrogenase i, d subunit [Francisella novicida FTG]
gi|254375046|ref|ZP_04990526.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Francisella novicida
GA99-3548]
gi|385793649|ref|YP_005826625.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|229891393|sp|A0Q8G9.1|NUOD_FRATN RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|118424144|gb|ABK90534.1| NADH dehydrogenase I, D subunit [Francisella novicida U112]
gi|151572764|gb|EDN38418.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Francisella novicida
GA99-3548]
gi|194321487|gb|EDX18972.1| NADH dehydrogenase i, d subunit [Francisella tularensis subsp.
novicida FTE]
gi|208743914|gb|EDZ90216.1| NADH dehydrogenase i, d subunit [Francisella novicida FTG]
gi|332678974|gb|AEE88103.1| NADH-ubiquinone oxidoreductase chain D [Francisella cf. novicida
Fx1]
Length = 417
Score = 615 bits (1587), Expect = e-173, Method: Compositional matrix adjust.
Identities = 281/415 (67%), Positives = 343/415 (82%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
E K+Y LNFGP HPAAHGVLRLILEL+GE V +ADPH+GLLHR TEKLAE + Y QS+ Y
Sbjct: 3 EYKNYTLNFGPVHPAAHGVLRLILELDGENVVRADPHVGLLHRGTEKLAEFKPYNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIEKLL +++P RA+YIRVMF E+TR+LNHL+W+ + +D+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEKLLQLEVPERAKYIRVMFAEMTRILNHLLWVAACGIDLG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFR REDL DCYEAVSGARMHAAY+RPGGV RDLP MPQY+ + + + K
Sbjct: 123 AMTVFLYAFRVREDLFDCYEAVSGARMHAAYFRPGGVARDLPTQMPQYQKTRFTSKRKAK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE RQGS+LDF++ F F K++DE +TLLTDNR+WKQR V IG V+ ERA +GFTG
Sbjct: 183 KLNEPRQGSMLDFLDHFVVDFEKSLDEIDTLLTDNRLWKQRTVDIGTVTAERAKELGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV WDLRK QPYE+Y+ L FDIPIG NGD YDRYLVR+ EMR+SNK+IKQC+ W
Sbjct: 243 PMLRGSGVAWDLRKTQPYEVYHKLEFDIPIGANGDCYDRYLVRMAEMRESNKLIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPV+S+N+K+ P R MK+NME+LIHHFKLF+EG+ P GE+Y EHPKGEFG
Sbjct: 303 LRANPGPVLSDNHKVAPPKRNAMKNNMEELIHHFKLFSEGYCTPEGEVYVGTEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+ SDGANKPYR+K+R+PGFAH+ ++ E++SGHM++D II T D+VFG++DR
Sbjct: 363 VYIKSDGANKPYRLKMRAPGFAHISAMDELLSGHMLADTPAIISTIDVVFGDVDR 417
>gi|56707214|ref|YP_169110.1| NADH dehydrogenase subunit D [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110669684|ref|YP_666241.1| NADH dehydrogenase subunit D [Francisella tularensis subsp.
tularensis FSC198]
gi|385793787|ref|YP_005830193.1| NADH dehydrogenase subunit D [Francisella tularensis subsp.
tularensis NE061598]
gi|81598106|sp|Q5NIN2.1|NUOD_FRATT RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|123359658|sp|Q14K35.1|NUOD_FRAT1 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|56603706|emb|CAG44667.1| NADH dehydrogenase I, D subunit [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110320017|emb|CAL08050.1| NADH dehydrogenase I, D subunit [Francisella tularensis subsp.
tularensis FSC198]
gi|282158322|gb|ADA77713.1| NADH dehydrogenase subunit D [Francisella tularensis subsp.
tularensis NE061598]
Length = 417
Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust.
Identities = 281/415 (67%), Positives = 342/415 (82%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
E K+Y LNFGP HPAAHGVLRLILEL+GE V +ADPH+GLLHR TEKLAE + Y QS+ Y
Sbjct: 3 EYKNYTLNFGPVHPAAHGVLRLILELDGENVVRADPHVGLLHRGTEKLAEFKPYNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIEKLL +++P RA+YIRVMF E+TR+LNHL+W+ + +D+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEKLLQLEVPERAKYIRVMFAEMTRILNHLLWVAACGIDLG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFR REDL DCYEAVSGARMHAAY+RPGGV RDLP MPQY+ + + + K
Sbjct: 123 AMTVFLYAFRVREDLFDCYEAVSGARMHAAYFRPGGVARDLPTQMPQYQKTRFTSKRKAK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE RQGS+LDF++ F F K++DE +TLLTDNR+WKQR V IG V+ ERA +GFTG
Sbjct: 183 KLNEPRQGSMLDFLDHFVVDFEKSLDEIDTLLTDNRLWKQRTVDIGTVTAERAKELGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV WDLRK QPYE+Y+ L FDIPIG NGD YDRYLVR+ EMR+SNK+IKQC+ W
Sbjct: 243 PMLRGSGVAWDLRKTQPYEVYHKLEFDIPIGANGDCYDRYLVRMAEMRESNKLIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPV+S+NNK+ P R MK+NME+LIHHFKLF+EG+ GE+Y EHPKGEFG
Sbjct: 303 LRANPGPVLSDNNKVAPPKRNAMKNNMEELIHHFKLFSEGYCTTEGEVYVGTEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+ SDGANKPYR+K+R+PGFAH+ ++ E++SGHM++D II T D+VFG++DR
Sbjct: 363 VYIKSDGANKPYRLKMRAPGFAHISAMDELLSGHMLADTPAIISTIDVVFGDVDR 417
>gi|389794711|ref|ZP_10197857.1| NADH dehydrogenase subunit D [Rhodanobacter fulvus Jip2]
gi|388431925|gb|EIL88965.1| NADH dehydrogenase subunit D [Rhodanobacter fulvus Jip2]
Length = 417
Score = 614 bits (1583), Expect = e-173, Method: Compositional matrix adjust.
Identities = 280/415 (67%), Positives = 338/415 (81%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRL++E++GE + +ADPHIGLLHR TEKLAE + + QS+ Y
Sbjct: 3 EIRNYTMNFGPQHPAAHGVLRLVMEMDGETIVRADPHIGLLHRGTEKLAESKPFNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYV AIE LL I+ P+RAQYIR MFDEITR+LNHLMWIGS+ LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYVRAIETLLGIEAPVRAQYIRTMFDEITRILNHLMWIGSNGLDLG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFRERE+L+D YEAVSGARMHA YYRPGGVYRDLP M QY+ S K
Sbjct: 123 AMAVFLYAFREREELMDVYEAVSGARMHATYYRPGGVYRDLPAQMSQYRESPWHKGNDLK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+N R+GS+LD+++ FT FP +DEYE LLT NRIWKQR VGIGV+SPE A G TG
Sbjct: 183 RINSWREGSMLDYLDAFTADFPSKVDEYEELLTTNRIWKQRTVGIGVISPELAQQWGMTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WDLRKKQPY Y ++FD+P+G NGD YDRYL R+EEMRQSN+II+QC++W
Sbjct: 243 VMLRGSGVEWDLRKKQPYAKYAEMDFDLPVGVNGDCYDRYLCRVEEMRQSNRIIQQCVQW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L++N GPV+ N K+ P+R+ MK +ME LIHHFKLFTEG+ VP GE Y VE PKGEFG
Sbjct: 303 LKANPGPVMVKNFKVAPPSRVEMKEDMEALIHHFKLFTEGYCVPAGETYCAVEAPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDGANKP+R+ +R+PGFAHL S+ ++ GHM++DVV +IGT D+VFGE+DR
Sbjct: 363 CYLVSDGANKPFRVHLRAPGFAHLSSMDTIVRGHMLADVVAMIGTYDLVFGEVDR 417
>gi|254373579|ref|ZP_04989065.1| hypothetical protein FTCG_01676 [Francisella tularensis subsp.
novicida GA99-3549]
gi|151571303|gb|EDN36957.1| hypothetical protein FTCG_01676 [Francisella novicida GA99-3549]
Length = 417
Score = 613 bits (1582), Expect = e-173, Method: Compositional matrix adjust.
Identities = 280/415 (67%), Positives = 343/415 (82%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
E K+Y LNFGP HPAAHGVLRLILEL+GE V +ADPH+GLLHR TEKLAE + Y QS+ Y
Sbjct: 3 EYKNYTLNFGPVHPAAHGVLRLILELDGENVVRADPHVGLLHRGTEKLAEFKPYNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIEKLL +++P RA+YIRVMF E+TR+LNHL+W+ + +D+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEKLLQLEVPERAKYIRVMFAEMTRILNHLLWVAACGIDLG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFR REDL DCYEAVSGARMHAAY+RPGGV RDLP MPQY+ + + + K
Sbjct: 123 AMTVFLYAFRVREDLFDCYEAVSGARMHAAYFRPGGVARDLPTQMPQYQKTRFTSKRKAK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN+ RQGS+LDF++ F F K++DE +TLLTDNR+WKQR V IG V+ ERA +GFTG
Sbjct: 183 KLNKPRQGSMLDFLDHFVVDFEKSLDEIDTLLTDNRLWKQRTVDIGTVTAERAKELGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV WDLRK QPYE+Y+ L FDIPIG NGD YDRYLVR+ EMR+SNK+IKQC+ W
Sbjct: 243 PMLRGSGVAWDLRKTQPYEVYHKLEFDIPIGANGDCYDRYLVRMAEMRESNKLIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPV+S+N+K+ P R MK+NME+LIHHFKLF+EG+ P GE+Y EHPKGEFG
Sbjct: 303 LRANPGPVLSDNHKVAPPKRNAMKNNMEELIHHFKLFSEGYCTPEGEVYVGTEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+ SDGANKPYR+K+R+PGFAH+ ++ E++SGHM++D II T D+VFG++DR
Sbjct: 363 VYIKSDGANKPYRLKMRAPGFAHISAMDELLSGHMLADTPAIISTIDVVFGDVDR 417
>gi|134301249|ref|YP_001121217.1| NADH dehydrogenase subunit D [Francisella tularensis subsp.
tularensis WY96-3418]
gi|187930991|ref|YP_001890975.1| NADH dehydrogenase subunit D [Francisella tularensis subsp.
mediasiatica FSC147]
gi|254368968|ref|ZP_04984981.1| NADH dehydrogenase [Francisella tularensis subsp. holarctica
FSC022]
gi|254371430|ref|ZP_04987431.1| NADH dehydrogenase [Francisella tularensis subsp. tularensis
FSC033]
gi|379716415|ref|YP_005304751.1| NADH-ubiquinone oxidoreductase subunit D [Francisella tularensis
subsp. tularensis TIGB03]
gi|379725098|ref|YP_005317284.1| NADH-ubiquinone oxidoreductase subunit D [Francisella tularensis
subsp. tularensis TI0902]
gi|421750966|ref|ZP_16188025.1| NADH dehydrogenase subunit D [Francisella tularensis subsp.
tularensis AS_713]
gi|421752822|ref|ZP_16189833.1| NADH dehydrogenase subunit D [Francisella tularensis subsp.
tularensis 831]
gi|421754641|ref|ZP_16191608.1| NADH dehydrogenase subunit D [Francisella tularensis subsp.
tularensis 80700075]
gi|421756554|ref|ZP_16193458.1| NADH dehydrogenase subunit D [Francisella tularensis subsp.
tularensis 80700103]
gi|421758419|ref|ZP_16195266.1| NADH dehydrogenase subunit D [Francisella tularensis subsp.
tularensis 70102010]
gi|424673657|ref|ZP_18110591.1| NADH dehydrogenase subunit D [Francisella tularensis subsp.
tularensis 70001275]
gi|229891392|sp|B2SEV2.1|NUOD_FRATM RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|229891394|sp|A4IVZ5.1|NUOD_FRATW RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|134049026|gb|ABO46097.1| NADH dehydrogenase I subunit D [Francisella tularensis subsp.
tularensis WY96-3418]
gi|151569669|gb|EDN35323.1| NADH dehydrogenase [Francisella tularensis subsp. tularensis
FSC033]
gi|157121889|gb|EDO66059.1| NADH dehydrogenase [Francisella tularensis subsp. holarctica
FSC022]
gi|187711900|gb|ACD30197.1| NADH dehydrogenase I, D subunit [Francisella tularensis subsp.
mediasiatica FSC147]
gi|377826547|gb|AFB79795.1| NADH-ubiquinone oxidoreductase chain D [Francisella tularensis
subsp. tularensis TI0902]
gi|377828092|gb|AFB78171.1| NADH-ubiquinone oxidoreductase chain D [Francisella tularensis
subsp. tularensis TIGB03]
gi|409089184|gb|EKM89236.1| NADH dehydrogenase subunit D [Francisella tularensis subsp.
tularensis 831]
gi|409089277|gb|EKM89328.1| NADH dehydrogenase subunit D [Francisella tularensis subsp.
tularensis AS_713]
gi|409090683|gb|EKM90695.1| NADH dehydrogenase subunit D [Francisella tularensis subsp.
tularensis 80700075]
gi|409092317|gb|EKM92293.1| NADH dehydrogenase subunit D [Francisella tularensis subsp.
tularensis 70102010]
gi|409093423|gb|EKM93368.1| NADH dehydrogenase subunit D [Francisella tularensis subsp.
tularensis 80700103]
gi|417435652|gb|EKT90531.1| NADH dehydrogenase subunit D [Francisella tularensis subsp.
tularensis 70001275]
Length = 417
Score = 613 bits (1580), Expect = e-172, Method: Compositional matrix adjust.
Identities = 280/415 (67%), Positives = 342/415 (82%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
E K+Y LNFGP HPAAHGVLRLILEL+GE V +ADPH+GLLHR TEKLAE + Y QS+ Y
Sbjct: 3 EYKNYTLNFGPVHPAAHGVLRLILELDGENVVRADPHVGLLHRGTEKLAEFKPYNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIEKLL +++P RA+YIRVMF E+TR+LNHL+W+ + +D+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEKLLQLEVPERAKYIRVMFAEMTRILNHLLWVAACGIDLG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFR REDL DCYEAVSGARMHAAY+RPGGV RDLP MPQY+ + + + K
Sbjct: 123 AMTVFLYAFRVREDLFDCYEAVSGARMHAAYFRPGGVARDLPTQMPQYQKTRFTSKRKAK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE RQGS+LDF++ F F K++DE +TLLTDNR+WKQR V IG V+ ERA +GFTG
Sbjct: 183 KLNEPRQGSMLDFLDHFVVDFEKSLDEIDTLLTDNRLWKQRTVDIGTVTAERAKELGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV WDLRK QPYE+Y+ L FDIPIG NGD YDRYLVR+ EMR+SNK+IKQC+ W
Sbjct: 243 PMLRGSGVAWDLRKTQPYEVYHKLEFDIPIGANGDCYDRYLVRMAEMRESNKLIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPV+S+N+K+ P R MK+NME+LIHHFKLF+EG+ GE+Y EHPKGEFG
Sbjct: 303 LRANPGPVLSDNHKVAPPKRNAMKNNMEELIHHFKLFSEGYCTTEGEVYVGTEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+ SDGANKPYR+K+R+PGFAH+ ++ E++SGHM++D II T D+VFG++DR
Sbjct: 363 VYIKSDGANKPYRLKMRAPGFAHISAMDELLSGHMLADTPAIISTIDVVFGDVDR 417
>gi|417557697|ref|ZP_12208718.1| NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Xylella fastidiosa
EB92.1]
gi|338179725|gb|EGO82650.1| NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Xylella fastidiosa
EB92.1]
Length = 409
Score = 611 bits (1576), Expect = e-172, Method: Compositional matrix adjust.
Identities = 279/409 (68%), Positives = 339/409 (82%)
Query: 285 LNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDY 344
+NFGPQHPAAHGVLRLILE++GE V +ADPHIGLLHR TEKLAE + + QS+ YMDRLDY
Sbjct: 1 MNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESKPFNQSIGYMDRLDY 60
Query: 345 VSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLL 404
VSMMCNEHAYV AIE L+ I+ P RAQYIR MFDEITR+LNHLMW+GS++LD+GAM V+L
Sbjct: 61 VSMMCNEHAYVRAIETLIGIQAPERAQYIRTMFDEITRILNHLMWLGSNALDLGAMAVML 120
Query: 405 YAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENR 464
YAFRERE+L+D YEA+SGARMHAAYYRPGGVYRDLP+ MP+YK S KA K LN R
Sbjct: 121 YAFREREELMDVYEAISGARMHAAYYRPGGVYRDLPDTMPKYKESRWHKGKALKRLNAAR 180
Query: 465 QGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGS 524
+GS+LDF+E FT+ FP+ IDEYETLLTDNRIWKQR VG+GV+ P+ A + G TG MLRGS
Sbjct: 181 EGSMLDFLEHFTDTFPQRIDEYETLLTDNRIWKQRTVGVGVIEPDVAKAWGMTGVMLRGS 240
Query: 525 GVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKG 584
G+ WDLRKKQPY Y+ ++FDIP+G GD YDRYL R+ EMR+SN+IIKQC++WL+ N G
Sbjct: 241 GIAWDLRKKQPYAKYDAVDFDIPLGTCGDCYDRYLCRVAEMRESNRIIKQCVQWLKMNPG 300
Query: 585 PVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSD 644
V+ N K+ P R +MK +ME LIHHFKLF+EG+ VP GE YS VE PKGEFG YL+SD
Sbjct: 301 QVMVENCKVAPPKRESMKDDMEALIHHFKLFSEGYCVPAGETYSAVEAPKGEFGCYLISD 360
Query: 645 GANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
GANKP+R+ +R+PGFAHL S+ ++ G+M++DVV +IGT D+VFGE+DR
Sbjct: 361 GANKPFRVHLRAPGFAHLSSMDAVVRGYMLADVVAMIGTYDLVFGEVDR 409
>gi|89257087|ref|YP_514449.1| NADH dehydrogenase subunit D [Francisella tularensis subsp.
holarctica LVS]
gi|115315444|ref|YP_764167.1| NADH dehydrogenase subunit D [Francisella tularensis subsp.
holarctica OSU18]
gi|156503301|ref|YP_001429366.1| NADH dehydrogenase subunit D [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|254368323|ref|ZP_04984341.1| NADH dehydrogenase I, D subunit [Francisella tularensis subsp.
holarctica 257]
gi|290952992|ref|ZP_06557613.1| NADH dehydrogenase subunit D [Francisella tularensis subsp.
holarctica URFT1]
gi|422939342|ref|YP_007012489.1| NADH dehydrogenase subunit D [Francisella tularensis subsp.
holarctica FSC200]
gi|423051471|ref|YP_007009905.1| NADH dehydrogenase subunit D [Francisella tularensis subsp.
holarctica F92]
gi|122324571|sp|Q0BK54.1|NUOD_FRATO RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|122500212|sp|Q2A1F3.1|NUOD_FRATH RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|229891391|sp|A7NEK7.1|NUOD_FRATF RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|89144918|emb|CAJ80266.1| NADH dehydrogenase I, D subunit [Francisella tularensis subsp.
holarctica LVS]
gi|115130343|gb|ABI83530.1| NADH dehydrogenase (ubiquinone) [Francisella tularensis subsp.
holarctica OSU18]
gi|134254131|gb|EBA53225.1| NADH dehydrogenase I, D subunit [Francisella tularensis subsp.
holarctica 257]
gi|156253904|gb|ABU62410.1| NADH dehydrogenase I, subunit D [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|407294493|gb|AFT93399.1| NADH dehydrogenase subunit D [Francisella tularensis subsp.
holarctica FSC200]
gi|421952193|gb|AFX71442.1| NADH dehydrogenase subunit D [Francisella tularensis subsp.
holarctica F92]
Length = 417
Score = 610 bits (1572), Expect = e-171, Method: Compositional matrix adjust.
Identities = 279/415 (67%), Positives = 341/415 (82%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
E K+Y LNFGP HPAAHGVLRLILEL+GE V +ADPH+GLLHR TEKLAE + Y QS+ Y
Sbjct: 3 EYKNYTLNFGPVHPAAHGVLRLILELDGENVVRADPHVGLLHRGTEKLAEFKPYNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIEKLL +++P RA+YIRVMF E+TR+LNHL+W+ + +D+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEKLLQLEVPERAKYIRVMFAEMTRILNHLLWVAACGIDLG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFR REDL DCYEAVSGARMHAAY+RPGGV RDLP MPQY+ + + + K
Sbjct: 123 AMTVFLYAFRVREDLFDCYEAVSGARMHAAYFRPGGVARDLPTQMPQYQKTRFTSKRKAK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE RQGS+LDF++ F F K++DE +TLLTDNR+WKQR V IG V+ ERA +GFTG
Sbjct: 183 KLNEPRQGSMLDFLDHFVVDFEKSLDEIDTLLTDNRLWKQRTVDIGTVTAERAKELGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV WDLRK QPYE+Y+ L FDIPIG NGD YDRYLVR+ EMR+SNK+IKQC+ W
Sbjct: 243 PMLRGSGVAWDLRKTQPYEVYHKLEFDIPIGANGDCYDRYLVRMAEMRESNKLIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N G V+S+N+K+ P R MK+NME+LIHHFKLF+EG+ GE+Y EHPKGEFG
Sbjct: 303 LRANPGSVLSDNHKVAPPKRNAMKNNMEELIHHFKLFSEGYCTTEGEVYVGTEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+ SDGANKPYR+K+R+PGFAH+ ++ E++SGHM++D II T D+VFG++DR
Sbjct: 363 VYIKSDGANKPYRLKMRAPGFAHISAMDELLSGHMLADTPAIISTIDVVFGDVDR 417
>gi|307069592|ref|YP_003878069.1| putative NADH:ubiquinone oxidoreductase, chain D [Candidatus
Zinderia insecticola CARI]
gi|306482852|gb|ADM89723.1| putative NADH:ubiquinone oxidoreductase, chain D [Candidatus
Zinderia insecticola CARI]
Length = 407
Score = 605 bits (1560), Expect = e-170, Method: Compositional matrix adjust.
Identities = 280/415 (67%), Positives = 338/415 (81%), Gaps = 10/415 (2%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+ K+Y LNFGPQHP+AHGVLRLILEL GE + A+PHIG LHR TEKL E + Y QS+PY
Sbjct: 3 KFKNYLLNFGPQHPSAHGVLRLILELNGEKIINAEPHIGYLHRGTEKLIENKNYFQSIPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDY+S+MCNEHAY++A+EKLL IK+PIRA+YIRVMFDEITR+LNHLMW+G+H+LDIG
Sbjct: 63 MDRLDYISIMCNEHAYILALEKLLKIKVPIRAKYIRVMFDEITRILNHLMWLGTHALDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+MG+ LY F+ERE L+DCYEAVSGAR+H+ YYRPGGV DLP MP NNK K
Sbjct: 123 SMGIFLYTFKEREYLMDCYEAVSGARLHSNYYRPGGVNNDLPNKMP--------NNKKYK 174
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
N+ R L FIE+F N FPK I+EYE LLTDN+IWKQRL IG+V+ ++A+SMGFTG
Sbjct: 175 --NDFRSKDFLYFIENFVNYFPKCINEYENLLTDNKIWKQRLKNIGIVNSDKAISMGFTG 232
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLR SGV WDLRK++PYE+YN L F IPIGKNGD YDRYL+RIEEM+QSNKIIKQCIKW
Sbjct: 233 PMLRASGVSWDLRKEKPYEVYNKLKFKIPIGKNGDCYDRYLIRIEEMKQSNKIIKQCIKW 292
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L+ N G +++NN K T N+K+NME++IHHFK FTEGF + EIY +EHPKGEFG
Sbjct: 293 LKVNPGIILNNNYKFTQCLNSNIKTNMEEMIHHFKFFTEGFKIKNNEIYKAIEHPKGEFG 352
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y++SD +NKPYR++IRSP FAHLQS + M+ H +SD +TIIGTQDIVFGEIDR
Sbjct: 353 VYILSDNSNKPYRLRIRSPSFAHLQSFNYMVKNHYLSDAITIIGTQDIVFGEIDR 407
>gi|254874052|ref|ZP_05246762.1| nuoD, NADH dehydrogenase I D subunit [Francisella tularensis subsp.
tularensis MA00-2987]
gi|254840051|gb|EET18487.1| nuoD, NADH dehydrogenase I D subunit [Francisella tularensis subsp.
tularensis MA00-2987]
Length = 412
Score = 599 bits (1545), Expect = e-168, Method: Compositional matrix adjust.
Identities = 275/408 (67%), Positives = 335/408 (82%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
E K+Y LNFGP HPAAHGVLRLILEL+GE V +ADPH+GLLHR TEKLAE + Y QS+ Y
Sbjct: 3 EYKNYTLNFGPVHPAAHGVLRLILELDGENVVRADPHVGLLHRGTEKLAEFKPYNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIEKLL +++P RA+YIRVMF E+TR+LNHL+W+ + +D+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEKLLQLEVPERAKYIRVMFAEMTRILNHLLWVAACGIDLG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFR REDL DCYEAVSGARMHAAY+RPGGV RDLP MPQY+ + + + K
Sbjct: 123 AMTVFLYAFRVREDLFDCYEAVSGARMHAAYFRPGGVARDLPTQMPQYQKTRFTSKRKAK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE RQGS+LDF++ F F K++DE +TLLTDNR+WKQR V IG V+ ERA +GFTG
Sbjct: 183 KLNEPRQGSMLDFLDHFVVDFEKSLDEIDTLLTDNRLWKQRTVDIGTVTAERAKELGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV WDLRK QPYE+Y+ L FDIPIG NGD YDRYLVR+ EMR+SNK+IKQC+ W
Sbjct: 243 PMLRGSGVAWDLRKTQPYEVYHKLEFDIPIGANGDCYDRYLVRMAEMRESNKLIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPV+S+N+K+ P R MK+NME+LIHHFKLF+EG+ GE+Y EHPKGEFG
Sbjct: 303 LRANPGPVLSDNHKVAPPKRNAMKNNMEELIHHFKLFSEGYCTTEGEVYVGTEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDI 686
+Y+ SDGANKPYR+K+R+PGFAH+ ++ E++SGHM++D II T D+
Sbjct: 363 VYIKSDGANKPYRLKMRAPGFAHISAMDELLSGHMLADTPAIISTIDV 410
>gi|114777364|ref|ZP_01452361.1| NADH dehydrogenase subunit D [Mariprofundus ferrooxydans PV-1]
gi|114552146|gb|EAU54648.1| NADH dehydrogenase subunit D [Mariprofundus ferrooxydans PV-1]
Length = 392
Score = 589 bits (1518), Expect = e-165, Method: Compositional matrix adjust.
Identities = 275/415 (66%), Positives = 332/415 (80%), Gaps = 25/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEVV +ADPHIGLLHR TEKL E++TYLQ+LPY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVVERADPHIGLLHRGTEKLFEEKTYLQNLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DR DYVSMM NEHAY +A+EKLL I+ P RAQYIRVMF E+TR+LNH MW+G+ +LDIG
Sbjct: 63 FDRFDYVSMMANEHAYTLAVEKLLGIEAPERAQYIRVMFAELTRILNHCMWLGAVALDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V L+ FRERED+ D YEAVSGARMHA+Y+RPGGV +DLPE
Sbjct: 123 AMTVFLFCFREREDIFDYYEAVSGARMHASYFRPGGVAKDLPE----------------- 165
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LL+ I+ FT RFP +DEYETLLT+NRIWKQR V I VV E AL GF+G
Sbjct: 166 --------GLLERIKGFTERFPGFVDEYETLLTENRIWKQRNVDIAVVDEESALEWGFSG 217
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PM+RGSGV WDLRK QPY++Y+ ++FDIP+G GD YDRYLVR+EEMRQSN+II+QC++W
Sbjct: 218 PMIRGSGVAWDLRKTQPYDVYDKMDFDIPVGVTGDCYDRYLVRVEEMRQSNRIIEQCVEW 277
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L +N GPV ++ K+TSP R MKS+ME LIHHFK F+EG++VP GE+Y VEHPKGEFG
Sbjct: 278 LSNNPGPVKVDDYKLTSPPRAEMKSDMESLIHHFKYFSEGYHVPEGEVYQVVEHPKGEFG 337
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG+NKPYR+K+R+PGFAH+++L M GHMI+DVV I+GTQDIVFGE+DR
Sbjct: 338 VYLVSDGSNKPYRMKVRAPGFAHIEALDYMCRGHMIADVVAILGTQDIVFGEVDR 392
>gi|406974411|gb|EKD97517.1| hypothetical protein ACD_23C00885G0001, partial [uncultured
bacterium]
Length = 354
Score = 579 bits (1492), Expect = e-162, Method: Compositional matrix adjust.
Identities = 265/354 (74%), Positives = 310/354 (87%)
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNEHAY +AIEKLL I++P+RAQYIRVMF EITRLLNHLMW+GSH D G+
Sbjct: 1 DRLDYVSMMCNEHAYCLAIEKLLGIEVPLRAQYIRVMFAEITRLLNHLMWLGSHGNDCGS 60
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+L+Y FREREDL D YEAVSGARMHAAY+RPGGVYRDLP+ MPQYK S I+N KA +
Sbjct: 61 STILIYTFREREDLFDMYEAVSGARMHAAYFRPGGVYRDLPDSMPQYKVSKIKNAKALEA 120
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
+N+NR+GS+LDFI+DFT RFP +DEYETLLTDNRIWKQR VGIGVV PERAL++G TGP
Sbjct: 121 MNQNRKGSMLDFIDDFTQRFPGCMDEYETLLTDNRIWKQRTVGIGVVRPERALNLGMTGP 180
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG+ WDLRK QPY++Y+ ++FD+P+GK GD YDRYLVR++EMR+SN+IIKQC+ WL
Sbjct: 181 MLRGSGIAWDLRKTQPYDVYDRMDFDVPVGKTGDCYDRYLVRMQEMRESNRIIKQCVDWL 240
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
R+N GPVI++N+KI P R +MKSNME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEFGI
Sbjct: 241 RANPGPVITDNHKIAPPDRESMKSNMEELIHHFKLFTEGFHVPEGEAYAAVEHPKGEFGI 300
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDGANKPYR+KIR+PGFAHL +L EM GHMI+D V IIGT DIVFGEIDR
Sbjct: 301 YLVSDGANKPYRLKIRAPGFAHLATLDEMARGHMIADAVAIIGTMDIVFGEIDR 354
>gi|444921315|ref|ZP_21241152.1| NADH-quinone oxidoreductase subunit D [Wohlfahrtiimonas
chitiniclastica SH04]
gi|444507674|gb|ELV07849.1| NADH-quinone oxidoreductase subunit D [Wohlfahrtiimonas
chitiniclastica SH04]
Length = 416
Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust.
Identities = 260/414 (62%), Positives = 331/414 (79%), Gaps = 1/414 (0%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
I++Y LNFGPQHPAAHGVLRLILEL GE + +ADPHIGLLHR TEKLAE + Y QS+ YM
Sbjct: 4 IENYTLNFGPQHPAAHGVLRLILELNGETIMRADPHIGLLHRGTEKLAEAKPYNQSIGYM 63
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DR+DY S MCNEH YV+AIEK L I+ PIRA+YIR +FDEI RL NHLMW+G+H +D+GA
Sbjct: 64 DRMDYSSCMCNEHTYVLAIEKALGIEPPIRAKYIRSLFDEIYRLQNHLMWLGAHGIDLGA 123
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
MG+LLY FR+REDL+D EA +GAR+H +YRPGGV +D+P++MP+Y+ + RN K
Sbjct: 124 MGMLLYCFRDREDLMDMCEATTGARLHQFFYRPGGVAKDIPDVMPKYEVNKFRNQKKVDR 183
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LN+ R+ S DF+ DFT+RF K+I+EY+TLL +NRIWKQR+VGIG V+ E A+++G TGP
Sbjct: 184 LNKPRE-SFTDFVIDFTHRFEKHIEEYKTLLFENRIWKQRVVGIGTVTAEEAMNLGLTGP 242
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSGV WDLRK QPY Y L+FDIP+GKNGD YDR+LVR+EEM QSN+II+QC +WL
Sbjct: 243 MLRGSGVAWDLRKTQPYAAYEYLDFDIPVGKNGDCYDRFLVRVEEMYQSNRIIRQCAQWL 302
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
N GPV+ + ++ P R MK +MEDLI FKL++EG+ VP GE+Y+ +EHPKGE G+
Sbjct: 303 AENPGPVMLEESVVSPPKRAEMKESMEDLIQQFKLYSEGYCVPEGEVYAAIEHPKGEMGV 362
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YL+SDGANKPYR+K+R GF HL +L + GHM+ D++ +IGT D+VFG+IDR
Sbjct: 363 YLISDGANKPYRMKVRPAGFPHLAALETLTKGHMLGDLIAVIGTLDLVFGDIDR 416
>gi|117926906|ref|YP_867523.1| NADH dehydrogenase subunit D [Magnetococcus marinus MC-1]
gi|218534430|sp|A0LDS4.1|NUOD_MAGSM RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|117610662|gb|ABK46117.1| NADH dehydrogenase subunit D [Magnetococcus marinus MC-1]
Length = 397
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 255/415 (61%), Positives = 314/415 (75%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
E ++Y +NFGPQHPAAHGVLRL+LEL+GEVV +ADPH+GLLHR TEKL EQ+TY+Q PY
Sbjct: 10 EFQNYAINFGPQHPAAHGVLRLLLELDGEVVERADPHVGLLHRGTEKLLEQKTYIQGTPY 69
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDY+SMM EHA+V+A+E+L I++P RAQYIR ++ EITR +NHL++ +H LD+G
Sbjct: 70 FDRLDYMSMMSEEHAWVIAVERLGQIEVPERAQYIRTIYAEITRFINHLLFFAAHGLDVG 129
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM + LY FRERE+L+D YEA GARMHA Y+RPGGV RDLP+ + Q
Sbjct: 130 AMTMFLYCFREREELMDIYEAACGARMHANYFRPGGVARDLPDGLEQR------------ 177
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
I DF N FP +DEYETLLT+NRIWKQRLV IG VS E A S GFTG
Sbjct: 178 -------------IRDFCNHFPSKLDEYETLLTNNRIWKQRLVDIGKVSQEDAFSWGFTG 224
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV +DLRK +PY+ Y+ + FDIP+GKNGDSYDRYLVRIEE R+ KII+QC+
Sbjct: 225 PMLRGSGVAFDLRKAEPYDAYDRVEFDIPVGKNGDSYDRYLVRIEECREGVKIIQQCLDQ 284
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
++ GPV ++N KI+ P R +M+ +ME +IHHFKL TEGF +P GE+Y+ VE PKGE G
Sbjct: 285 MQP--GPVRNDNFKISMPYRQDMQQDMESMIHHFKLCTEGFNLPAGEVYAAVETPKGELG 342
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG NKPYR +IR+ GF HLQ++ EM GHMI+DV TIIG+ DIVFGEIDR
Sbjct: 343 VYLVSDGGNKPYRARIRAAGFNHLQAVKEMARGHMIADVTTIIGSIDIVFGEIDR 397
>gi|269812160|gb|ACZ44458.1| NADH dehydrogenase subunit 7 [Pythium ultimum]
Length = 392
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 260/415 (62%), Positives = 316/415 (76%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK++ +NFGPQHPAAHGVLRLILEL GE+V+KADPHIGLLHR TEKL E + YLQ+LPY
Sbjct: 5 KIKNFSINFGPQHPAAHGVLRLILELNGEIVKKADPHIGLLHRGTEKLIEYKNYLQALPY 64
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMMC EHAYV+A+EKLLN IP+RAQYIRV+F EITR+LNH++ + H+LD+G
Sbjct: 65 FDRLDYVSMMCQEHAYVLAVEKLLNCDIPLRAQYIRVLFSEITRILNHILAVVCHALDVG 124
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM L + F ERE LL+ YE VSGARMH++Y+RPGGV++DLP+
Sbjct: 125 AMTPLFWGFEEREKLLEFYERVSGARMHSSYFRPGGVHQDLPK----------------- 167
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LL+ I F N+F +DE E LLTDNRIWKQRLV IGV+S + AL GF+G
Sbjct: 168 --------GLLNDIYIFCNQFNTRLDEIEELLTDNRIWKQRLVDIGVISAKDALDWGFSG 219
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ WDLRK QPYE+Y+ L+FDIPIG NGD YDRYL+RIEEMRQS +II Q +
Sbjct: 220 VMLRGSGISWDLRKTQPYEVYDKLDFDIPIGTNGDCYDRYLIRIEEMRQSVRIILQVLNE 279
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ +G + ++ KIT+P RI MK++ME LIHHFK ++E V GE Y+ +E PKGE+G
Sbjct: 280 I--PEGLIKLDDKKITNPNRIQMKNSMESLIHHFKYYSENITVNSGETYTVIEAPKGEYG 337
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++LVSDG NKPYR KIRSPGFAHLQ+L M HMI+DVVTIIGTQDIVFGEIDR
Sbjct: 338 VFLVSDGTNKPYRCKIRSPGFAHLQALDFMAKNHMIADVVTIIGTQDIVFGEIDR 392
>gi|299830470|ref|YP_003734841.1| NADH dehydrogenase subunit 7 [Pythium ultimum]
gi|269810847|gb|ACZ43876.1| NADH dehydrogenase subunit 7 [Pythium ultimum]
Length = 392
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 259/415 (62%), Positives = 316/415 (76%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK++ +NFGPQHPAAHGVLRLILEL GE+V+KADPHIGLLHR TEKL E + YLQ+LPY
Sbjct: 5 KIKNFSINFGPQHPAAHGVLRLILELNGEIVKKADPHIGLLHRGTEKLIEYKNYLQALPY 64
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMMC EHAYV+A+EKLLN IP+RAQYIRV+F EITR+LNH++ + H+LD+G
Sbjct: 65 FDRLDYVSMMCQEHAYVLAVEKLLNCDIPLRAQYIRVLFSEITRILNHILAVVCHALDVG 124
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM L + F ERE LL+ YE VSGARMH++Y+RPGGV++DLP+
Sbjct: 125 AMTPLFWGFEEREKLLEFYERVSGARMHSSYFRPGGVHQDLPK----------------- 167
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LL+ I F N+F +DE E LLTDNRIWKQRLV IGV+S + AL GF+G
Sbjct: 168 --------GLLNDIYIFCNQFNTRLDEIEELLTDNRIWKQRLVDIGVISAKDALDWGFSG 219
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ WDLRK QPYE+Y+ L+FDIPIG NGD YDRYL+RIEEMRQS +II Q +
Sbjct: 220 VMLRGSGISWDLRKTQPYEVYDKLDFDIPIGTNGDCYDRYLIRIEEMRQSVRIILQVLNE 279
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ +G + ++ KIT+P R+ MK++ME LIHHFK ++E V GE Y+ +E PKGE+G
Sbjct: 280 I--PEGLIKLDDKKITNPNRVQMKNSMESLIHHFKYYSENITVNSGETYTVIEAPKGEYG 337
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++LVSDG NKPYR KIRSPGFAHLQ+L M HMI+DVVTIIGTQDIVFGEIDR
Sbjct: 338 VFLVSDGTNKPYRCKIRSPGFAHLQALDFMAKNHMIADVVTIIGTQDIVFGEIDR 392
>gi|110225684|ref|YP_665689.1| NADH dehydrogenase subunit 7 [Mesostigma viride]
gi|17222555|gb|AAL36728.1|AF353999_8 NADH dehydrogenase subunit 7 [Mesostigma viride]
gi|315320220|gb|ADU04589.1| NADH dehydrogenase subunit 7 (mitochondrion) [Mesostigma viride]
Length = 399
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 255/416 (61%), Positives = 313/416 (75%), Gaps = 28/416 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++K+++LNFGPQHPAAHGVLRL+LE+ GEVV +ADPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 11 KVKNFQLNFGPQHPAAHGVLRLVLEMNGEVVERADPHIGLLHRGTEKLIEYKTYLQALPY 70
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIK-IPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
DRLDYVSMM EHAY +A+EKLL I+ +P+RAQYIRV+F EITRLLNHL+ + +H++D+
Sbjct: 71 FDRLDYVSMMAQEHAYSLAVEKLLGIRSVPLRAQYIRVLFSEITRLLNHLLALTTHAMDV 130
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GA+ L+AF ERE LL+ YE VSGARMHAAY RPGGV +D+P+
Sbjct: 131 GALTPFLWAFEEREKLLEFYERVSGARMHAAYIRPGGVAQDIPQ---------------- 174
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
L D I FT +F IDE E +LT+NRIWK+RL+ IGVV+ E+A+ GFT
Sbjct: 175 ---------GLCDDIYQFTQQFASRIDEMEEMLTNNRIWKERLIDIGVVTAEKAMQWGFT 225
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
G MLRGSG+ WDLRK +PYE+Y+ L FDIP+G GD YDRYLVR+EEMRQS +II QC+
Sbjct: 226 GVMLRGSGIPWDLRKAEPYEVYDQLEFDIPVGTKGDCYDRYLVRVEEMRQSLRIIVQCLN 285
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+ G V ++ KI P+R +MK +ME LIHHFK FTEGF VP GE Y+ +E PKGEF
Sbjct: 286 --KMPLGIVQIDDRKIMPPSRFSMKHSMESLIHHFKNFTEGFSVPAGETYTAIEAPKGEF 343
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG N+PYR KIR+PGF HLQ L M HM++DVVTIIGTQDIVFGE+DR
Sbjct: 344 GVYLVSDGTNRPYRCKIRAPGFVHLQGLDMMSKKHMLADVVTIIGTQDIVFGEVDR 399
>gi|150406473|ref|YP_001315124.1| NADH dehydrogenase subunit 7 [Chlorokybus atmophyticus]
gi|126507710|gb|ABO15107.1| NADH dehydrogenase subunit 7 [Chlorokybus atmophyticus]
Length = 398
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 253/415 (60%), Positives = 314/415 (75%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK++ LNFGPQHPAAHGVLRL+LE+ GEVV +ADPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 11 KIKNFTLNFGPQHPAAHGVLRLVLEMNGEVVERADPHIGLLHRGTEKLIEYKTYLQALPY 70
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM EHAY +A+EKLL ++P+RAQYIRV+F EITRLLNHL+ + +H++D+G
Sbjct: 71 FDRLDYVSMMAQEHAYSLAVEKLLGCEVPLRAQYIRVLFSEITRLLNHLLALTTHAMDVG 130
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+AF ERE LL+ YE VSGARMHA+Y RPGGV +DLP
Sbjct: 131 ALTPFLWAFEEREKLLEFYERVSGARMHASYIRPGGVSQDLPI----------------- 173
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L + I F +F +DE E +LT+NRIWKQRLV IGVV+ E A++ GF+G
Sbjct: 174 --------GLSEDIYKFAQQFSSRVDEIEEMLTNNRIWKQRLVDIGVVTAEDAMNWGFSG 225
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ WDLRK QPY++Y+ ++FD+P+G GD YDRYL+R+EEMRQS +II QCI
Sbjct: 226 VMLRGSGISWDLRKAQPYDVYDKVDFDVPVGTRGDCYDRYLIRVEEMRQSIRIIMQCINQ 285
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + G + S++ KIT P+R+ MK +ME LIHHFKL+TEGF VP E Y+ VE PKGEFG
Sbjct: 286 MPT--GMIKSDDRKITPPSRLQMKQSMESLIHHFKLYTEGFSVPSAETYTAVEAPKGEFG 343
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVS+ N+PYR KIR+PGFAHLQSL M HM++DVVTIIGTQDIVFGEIDR
Sbjct: 344 VYLVSNNTNRPYRCKIRAPGFAHLQSLDFMSKNHMLADVVTIIGTQDIVFGEIDR 398
>gi|289065193|ref|YP_003434245.1| NADH dehydrogenase subunit 7 [Chattonella marina]
gi|288871905|dbj|BAI70592.1| NADH dehydrogenase subunit 7 [Chattonella marina]
Length = 397
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 251/414 (60%), Positives = 313/414 (75%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
IK++ +NFGPQHPAAHGVLRL+LEL GEVV +ADPHIGLLHR TEKL E +TY+Q+LPY
Sbjct: 11 IKNFTINFGPQHPAAHGVLRLVLELNGEVVDRADPHIGLLHRGTEKLIEYKTYIQALPYF 70
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMM EH YV+ IEKLL +PIR+QYIRV+F EITR+LNHL+ +G H++D+GA
Sbjct: 71 DRLDYVSMMTQEHTYVLGIEKLLGCNVPIRSQYIRVLFCEITRILNHLLAVGCHAMDVGA 130
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M L+AF ERE L++ YE VSGARMHA Y+RPGGV +DLP
Sbjct: 131 MTPFLWAFEEREKLMEFYERVSGARMHAGYFRPGGVSQDLPL------------------ 172
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD I F+ +F +DE E +LT NRIWKQRLV IG+V+ + A GF+G
Sbjct: 173 -------GLLDDIYLFSKQFVTRLDEMEEMLTTNRIWKQRLVDIGIVTKKEACDWGFSGV 225
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGS + WDLRK QPYE+Y+ + FD+PIGKNGD YDRYL+R++EMR+S KII+QC+ +
Sbjct: 226 MLRGSTISWDLRKNQPYEVYDKMEFDVPIGKNGDCYDRYLIRVQEMRESLKIIQQCLNNM 285
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
GP+ +++KITSP+R++MK +ME LIHHFKL+TEG VP GE Y+ E PKGEFG+
Sbjct: 286 --PLGPIKLDDHKITSPSRLDMKQSMESLIHHFKLYTEGMIVPAGETYTSTEAPKGEFGV 343
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YL+S+G N+PYR KI++PGF HLQ+L M GHMI+DVVTIIGTQDIVFGE+DR
Sbjct: 344 YLISNGTNRPYRCKIKAPGFGHLQALDFMSKGHMIADVVTIIGTQDIVFGEVDR 397
>gi|376403807|ref|YP_005090292.1| nad7 gene product (mitochondrion) [Heterosigma akashiwo]
gi|239811624|gb|ACS27111.1| NADH dehydrogenase subunit 7 [Heterosigma akashiwo]
gi|239811664|gb|ACS27150.1| NADH dehydrogenase subunit 7 [Heterosigma akashiwo]
gi|294610387|dbj|BAI70606.2| NADH dehydrogenase subunit 7 [Heterosigma akashiwo]
Length = 397
Score = 526 bits (1355), Expect = e-146, Method: Compositional matrix adjust.
Identities = 252/415 (60%), Positives = 314/415 (75%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK++ +NFGPQHPAAHGVLRL+LEL GEVV +ADPHIGLLHR TEKL E +TY+Q+LPY
Sbjct: 10 KIKNFTINFGPQHPAAHGVLRLVLELNGEVVDRADPHIGLLHRGTEKLIEYKTYIQALPY 69
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM EH YV+ IEKLL IP+RAQYIRV+F EITR+LNHL+ +G H++D+G
Sbjct: 70 FDRLDYVSMMTQEHTYVLGIEKLLGCDIPVRAQYIRVLFCEITRILNHLLAVGCHAMDVG 129
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM L+AF ERE L++ YE VSGARMHAAY+RPGGV +DLP
Sbjct: 130 AMTPFLWAFEEREKLMEFYERVSGARMHAAYFRPGGVSQDLPL----------------- 172
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+LD I F+ +F +DE E +LT NRIWKQRLV IG+VS + A GF+G
Sbjct: 173 --------GILDDIYLFSKQFVTRLDEMEEMLTSNRIWKQRLVDIGIVSKKDACDWGFSG 224
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGS + WDLRK QPYE+Y+ + F++P+GKNGD YDRYL+R++EMR+S KII+QC+
Sbjct: 225 VMLRGSTIPWDLRKNQPYEVYDKMEFEVPVGKNGDCYDRYLIRMQEMRESLKIIQQCLNN 284
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ GPV +++KITSP+R +MK +ME LIHHFKL+TEG VP GE Y+ E PKGEFG
Sbjct: 285 M--PLGPVKLDDHKITSPSRSDMKQSMESLIHHFKLYTEGMVVPAGETYTATEAPKGEFG 342
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVS+G N+PYR KI++PGF HLQ+L M GHM++DVVTIIGTQDIVFGE+DR
Sbjct: 343 VYLVSNGTNRPYRCKIKAPGFGHLQALDFMAKGHMVADVVTIIGTQDIVFGEVDR 397
>gi|229315929|ref|YP_002860155.1| NADH dehydrogenase subunit 7 [Micromonas sp. RCC299]
gi|226431214|gb|ACO55619.1| NADH dehydrogenase subunit 7 [Micromonas sp. RCC299]
Length = 398
Score = 526 bits (1354), Expect = e-146, Method: Compositional matrix adjust.
Identities = 253/418 (60%), Positives = 311/418 (74%), Gaps = 33/418 (7%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++K++ LNFGPQHPAAHGVLRL+LE+ GEVV +ADPHIGLLHR TEKL E + Y+Q+LPY
Sbjct: 11 KVKNFTLNFGPQHPAAHGVLRLVLEMNGEVVERADPHIGLLHRGTEKLIEYKNYMQALPY 70
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM EHAY +A+EKLLN ++P+RAQYIRV+F EITR+LNHL+ + H++D+G
Sbjct: 71 FDRLDYVSMMAQEHAYSLAVEKLLNCEVPLRAQYIRVLFCEITRILNHLLALSCHAMDVG 130
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+AF ERE L++ YE VSGARMHAAY RPGGV +DLP
Sbjct: 131 ALTPFLWAFEEREKLMEFYERVSGARMHAAYIRPGGVSQDLP------------------ 172
Query: 459 ILNENRQGSLLDFIED---FTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMG 515
L F +D F F IDE E +LT+NRIWKQRLV IGVV+ + A+ G
Sbjct: 173 ----------LGFCDDVHVFCQHFASRIDEMEEMLTNNRIWKQRLVDIGVVTADEAMQWG 222
Query: 516 FTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQC 575
F+G MLRGSGV WDLRK QPY++YN L FDIP+G GD YDRYL+RIEEMRQS ++I +C
Sbjct: 223 FSGVMLRGSGVAWDLRKTQPYDVYNELAFDIPVGSRGDCYDRYLIRIEEMRQSLRLIMEC 282
Query: 576 IKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
I L +G + +++ KIT P+R +MK +ME LIHHFKL+TEGF VP E Y+ VE PKG
Sbjct: 283 INML--PEGTIKTDDRKITPPSRTHMKESMESLIHHFKLYTEGFVVPASETYTAVEAPKG 340
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFG+YLVS+G+NKPYR KIR+PGF HLQ L M HM++DVVTIIGTQDIVFGE+DR
Sbjct: 341 EFGVYLVSNGSNKPYRCKIRAPGFVHLQGLDFMAKNHMLADVVTIIGTQDIVFGEVDR 398
>gi|162134230|gb|ABX82551.1| NADH dehydrogenase subunit 7 [Trebouxia aggregata]
Length = 398
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 249/415 (60%), Positives = 312/415 (75%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++K++ +NFGPQHPAAHGVLRL+LE+ GEVV++ADPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 11 KVKNFTINFGPQHPAAHGVLRLVLEMNGEVVQRADPHIGLLHRGTEKLIEYKTYLQALPY 70
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMMC EHAY +A+EKLL ++P+RAQYIRV+F EITRLLNHL+ + H++D+G
Sbjct: 71 FDRLDYVSMMCQEHAYSLAVEKLLQCQVPLRAQYIRVIFSEITRLLNHLLAVTCHAMDVG 130
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGARMHAAY RPGGV +DLP
Sbjct: 131 ALTPFLWGFEEREKLMEFYERVSGARMHAAYVRPGGVAQDLPV----------------- 173
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L + I F +F IDE E +LT+NRIWKQRLV IGVV+ ++A+ GF+G
Sbjct: 174 --------GLCEDIYKFAQQFASRIDEMEEMLTNNRIWKQRLVDIGVVTADQAMDWGFSG 225
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M RGSG+ WDLRK QPY++Y+ + FD+P+G+ GD YDRYL+RIEEMRQS +II Q I
Sbjct: 226 VMARGSGISWDLRKTQPYDVYDKMLFDVPVGRKGDCYDRYLIRIEEMRQSIRIITQAINE 285
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + G + S++ KIT P+R +K +ME LIHHFKL+TEGF VP GE Y+ VE PKGEFG
Sbjct: 286 IPN--GMIKSDDRKITPPSRSQIKQSMESLIHHFKLYTEGFAVPSGETYTAVEAPKGEFG 343
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVS+G N+PYR KIR+PGFAHLQ L M HM++DVVTIIGTQDIVFGE+DR
Sbjct: 344 VYLVSNGTNRPYRCKIRAPGFAHLQGLDFMARNHMLADVVTIIGTQDIVFGEVDR 398
>gi|11466533|ref|NP_044782.1| NADH dehydrogenase subunit 7 (mitochondrion) [Reclinomonas
americana]
gi|6647647|sp|O21270.1|NDUS2_RECAM RecName: Full=NADH-ubiquinone oxidoreductase 49 kDa subunit;
AltName: Full=NADH dehydrogenase subunit 7
gi|2258363|gb|AAD11897.1| NADH dehydrogenase subunit 7 (mitochondrion) [Reclinomonas
americana]
Length = 396
Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust.
Identities = 251/415 (60%), Positives = 312/415 (75%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++K++ +NFGPQHPAAHGVLRL+LEL GEVV +ADPHIGLLHR TEKL E + YLQ+LPY
Sbjct: 9 KLKNFTMNFGPQHPAAHGVLRLVLELNGEVVNRADPHIGLLHRGTEKLIEYKNYLQALPY 68
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM EHAY +A+EKLL ++P RAQYIRV+F EITR+LNHLM + +H+LD+G
Sbjct: 69 FDRLDYVSMMAQEHAYSLAVEKLLGCEVPKRAQYIRVLFCEITRILNHLMAVTTHALDVG 128
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM L+ F ERE L++ YE VSGARMHAAY RPGGV +D+P
Sbjct: 129 AMTPFLWGFEEREKLMEFYERVSGARMHAAYIRPGGVSQDMPM----------------- 171
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L + I F +F IDE E +L+ NRIWKQRLV IG VS E AL GF+G
Sbjct: 172 --------GLSEDIYKFAKQFGSRIDEIEDVLSSNRIWKQRLVDIGTVSAEEALDWGFSG 223
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ WDLRK QPY++Y+ L FDIP+G GD YDRYL+R+EEMRQS K+I QC+
Sbjct: 224 VMLRGSGIAWDLRKTQPYDVYDELEFDIPVGTKGDCYDRYLIRVEEMRQSLKLIMQCLNK 283
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + G + ++ KI+ P+R++MK +ME LIHHFKL+TEG+ VP+GE Y+ VE PKGEFG
Sbjct: 284 MPT--GVIKVDDKKISPPSRVDMKDSMEALIHHFKLYTEGYSVPIGETYTAVEAPKGEFG 341
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG++KPYR KI++PGF+HLQ L+ M GHMI+DVVTIIGTQDIVFGE+DR
Sbjct: 342 VYLVSDGSSKPYRCKIKAPGFSHLQGLNFMSKGHMIADVVTIIGTQDIVFGEVDR 396
>gi|11467085|ref|NP_042561.1| NADH dehydrogenase, subunit 7 [Acanthamoeba castellanii]
gi|3914189|sp|Q37384.1|NDUS2_ACACA RecName: Full=NADH-ubiquinone oxidoreductase 49 kDa subunit;
AltName: Full=NADH dehydrogenase subunit 7
gi|562066|gb|AAD11854.1| NADH dehydrogenase, subunit 7 [Acanthamoeba castellanii]
Length = 401
Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust.
Identities = 256/415 (61%), Positives = 316/415 (76%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK++ +NFGPQHPAAHGVLRLILEL+GE+VRKADPHIGLLHR TEKL E +TY+Q+LPY
Sbjct: 14 KIKNFTMNFGPQHPAAHGVLRLILELDGELVRKADPHIGLLHRGTEKLIEYKTYIQALPY 73
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM EHAY +AIEKLLN +PIRAQYIRV++ E+TR+LNH++ + +H++D+G
Sbjct: 74 FDRLDYVSMMSQEHAYSLAIEKLLNCNVPIRAQYIRVIYSELTRILNHILAVTTHAMDVG 133
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGARMHAAY RPGGV +D P
Sbjct: 134 ALTPFLWLFEEREKLMEFYERVSGARMHAAYIRPGGVAQDFP----------------LG 177
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+ N+ ++ F+E F R + E E LL NRIWKQRLV +G+V+ E ALS GF+G
Sbjct: 178 LWND-----IMQFVEQFFWR----LVEVEELLNGNRIWKQRLVDVGIVTAEEALSHGFSG 228
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ WDLRK PYE+YN LNF+IPIGKNGD YDRYL+R+ EM +S IIKQC+
Sbjct: 229 VMLRGSGIAWDLRKNNPYEVYNKLNFNIPIGKNGDCYDRYLIRVYEMYESLNIIKQCLTA 288
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + G + N+ KIT P R +MK +ME LIHHFKL++EGF VP E Y+CVE PKGEFG
Sbjct: 289 MPA--GLIKVNDKKITPPERTDMKYSMESLIHHFKLYSEGFNVPENETYACVEAPKGEFG 346
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDG+NKPYR KI++PGF HLQSL+ M GHMI+DVVTIIGTQDIVFGEIDR
Sbjct: 347 VYVVSDGSNKPYRCKIKAPGFLHLQSLNSMSKGHMIADVVTIIGTQDIVFGEIDR 401
>gi|435856270|ref|YP_007317106.1| NADH dehydrogenase subunit 7 (mitochondrion) [Nannochloropsis
gaditana]
gi|429126169|gb|AFZ64339.1| NADH dehydrogenase subunit 7 (mitochondrion) [Nannochloropsis
gaditana]
Length = 398
Score = 523 bits (1348), Expect = e-145, Method: Compositional matrix adjust.
Identities = 248/415 (59%), Positives = 313/415 (75%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK++ +NFGPQHPAAHGVLRL+L L GE+V +ADPHIGLLHR TEKL E +TY+Q+LPY
Sbjct: 11 KIKNFTINFGPQHPAAHGVLRLVLALNGEIVERADPHIGLLHRGTEKLIEHKTYIQALPY 70
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM EH Y +A+EKL N KIP+RAQ+IRV+F EITR+LNHL+ +G H++D+G
Sbjct: 71 FDRLDYVSMMAQEHTYSLAVEKLANTKIPMRAQHIRVLFLEITRILNHLLAVGCHAMDVG 130
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM L+AF ERE L++ YE VSGARMHAAY RPGGV +D+P
Sbjct: 131 AMTPFLWAFEEREKLMEFYERVSGARMHAAYIRPGGVSQDIPL----------------- 173
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I F +F +DE E +LT NRIWKQRLV IGVVS + A+ GF+G
Sbjct: 174 --------GLLDDIYIFAEQFGTRLDEMEEMLTANRIWKQRLVDIGVVSAKDAIDWGFSG 225
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ WDLRK QPYEIY+ L+F++P+G NGD +DRYL+R+EEMRQS K+I Q +
Sbjct: 226 VMLRGSGIPWDLRKSQPYEIYSKLDFEVPVGNNGDCFDRYLIRVEEMRQSLKLIWQTLNT 285
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GP+ S++ K+T P+R ++K +ME LIHHFKL+TEG +P GE Y+ E PKGEFG
Sbjct: 286 IPN--GPIKSDDRKLTPPSRAHLKQSMESLIHHFKLYTEGMIIPAGETYTATEAPKGEFG 343
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG+N+PYR KI++PGF HLQ+L M GHM++DVVTIIGTQDIVFGE+DR
Sbjct: 344 VYLVSDGSNRPYRCKIKAPGFGHLQALDFMAKGHMVADVVTIIGTQDIVFGEVDR 398
>gi|50261301|ref|YP_052909.1| NADH dehydrogenase subunit 7 [Saprolegnia ferax]
gi|48237614|gb|AAT40663.1| NADH dehydrogenase subunit 7 [Saprolegnia ferax]
Length = 392
Score = 522 bits (1345), Expect = e-145, Method: Compositional matrix adjust.
Identities = 252/415 (60%), Positives = 312/415 (75%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK++ +NFGPQHPAAHGVLRLILEL GE+V+KADPHIGLLHR TEKL E + YLQ+LPY
Sbjct: 5 KIKNFSINFGPQHPAAHGVLRLILELNGEIVQKADPHIGLLHRGTEKLIEYKNYLQALPY 64
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM EHAYV+A+EKLLN IP+RA+YIRV+F EITR+LNHL+ I H+LD+G
Sbjct: 65 FDRLDYVSMMSQEHAYVLAVEKLLNCNIPLRAKYIRVLFSEITRILNHLLAITCHALDVG 124
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM + F ERE L++ YE VSGARMH++Y+RPGGV++DLP
Sbjct: 125 AMTPFFWGFEEREKLMEFYERVSGARMHSSYFRPGGVHQDLPL----------------- 167
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LL+ I F N+FP +DE+E +LT NRIWKQRLV IG+V + AL +GF+G
Sbjct: 168 --------GLLNDIFIFCNQFPTRLDEFEEMLTGNRIWKQRLVDIGIVKAKDALDLGFSG 219
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ WDLRK QPYEIY+ L+F IPIG NGD YDRYL+RIEEMRQS II Q +
Sbjct: 220 VMLRGSGISWDLRKTQPYEIYDKLDFSIPIGTNGDCYDRYLIRIEEMRQSINIILQTLNQ 279
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ +GP+ ++ KI+SP R+ +K +ME LIHHFK ++E V GE ++ +E PKGEFG
Sbjct: 280 M--PEGPIKIDDKKISSPNRVQIKQSMESLIHHFKYYSENITVNSGETFTVIEAPKGEFG 337
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++LVSDG NKPYR KI++PGFAHLQ+L M HMI+DVVTIIGTQDIVFGE+DR
Sbjct: 338 VFLVSDGTNKPYRCKIKAPGFAHLQALDFMCKDHMIADVVTIIGTQDIVFGEVDR 392
>gi|323398679|ref|YP_004222754.1| NADH dehydrogenase subunit 7 [Glaucocystis nostochinearum]
gi|321401372|gb|ADW83126.1| NADH dehydrogenase subunit 7 [Glaucocystis nostochinearum]
Length = 399
Score = 522 bits (1345), Expect = e-145, Method: Compositional matrix adjust.
Identities = 253/415 (60%), Positives = 309/415 (74%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
E K++ +NFGPQHPAAHGVLRL+LEL GEVV +ADPHIGLLHR TEKL E ++YLQ+LPY
Sbjct: 12 EFKNFTMNFGPQHPAAHGVLRLVLELNGEVVERADPHIGLLHRGTEKLIEHKSYLQALPY 71
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM EHAY +A+EKLL K+P+RAQ+IRV+F EITR+LNHL+ + H+LD+G
Sbjct: 72 FDRLDYVSMMAQEHAYSLAVEKLLGCKVPLRAQWIRVIFLEITRILNHLLAVTCHALDVG 131
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ LL F ERE L++ YE VSGARMHAAY RPGGV D+P
Sbjct: 132 ALTPLLLGFEEREKLMEFYERVSGARMHAAYIRPGGVSLDVPI----------------- 174
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I F ++F K IDE E LLT+NRIWKQRLV +G+V+ + A + GF+G
Sbjct: 175 --------GLLDDIYLFIDQFTKKIDEIEELLTNNRIWKQRLVDVGIVTADEAQAWGFSG 226
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WDLRK QPYE YNL +F+IPIG GD YDRYL+R+EEMRQS II Q I
Sbjct: 227 VMLRGSGVVWDLRKSQPYETYNLTDFNIPIGTKGDCYDRYLIRMEEMRQSTSIINQAINL 286
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ G + ++ KIT P+R +K +ME LIHHFKL++EG+ VP GE Y+ VE PKGEFG
Sbjct: 287 IPI--GNIKVDDRKITPPSRTELKQSMESLIHHFKLYSEGYSVPFGETYTAVEAPKGEFG 344
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYL++DG N+PYR KI++PGFAHLQ L+ M GHM++DVVTIIGTQDIVFGE+DR
Sbjct: 345 IYLIADGTNRPYRCKIKAPGFAHLQGLNMMSKGHMLADVVTIIGTQDIVFGEVDR 399
>gi|319412287|gb|ADV41824.1| NADH dehydrogenase subunit 7 [Bigelowiella natans]
Length = 397
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 248/414 (59%), Positives = 307/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+++ LNFGPQHP+AHGVLRL+LEL+GE V +ADPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 11 METLSLNFGPQHPSAHGVLRLVLELDGERVVRADPHIGLLHRGTEKLIEHKTYLQALPYF 70
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMM EH Y +A+E+LL +PIRAQYIRV+F E+TR+LNHL+ + +H+LD+GA
Sbjct: 71 DRLDYVSMMAQEHGYSLAVERLLQKNVPIRAQYIRVIFSELTRILNHLLSLTTHALDVGA 130
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+AF ERE L++ YE VSGARMHAAY RPGGV +DLP
Sbjct: 131 LTPFLWAFEEREKLMEFYERVSGARMHAAYVRPGGVSQDLP------------------- 171
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LL I F +F +DE E LLTDNRIWKQRLVGIG VS AL+ F+G
Sbjct: 172 ------AGLLSDISSFIEQFGSRVDEIEELLTDNRIWKQRLVGIGTVSARAALAHSFSGV 225
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSGV+WDLR+ +PYE+YN L+FD+P+G +GD YDRYL+RIEEMRQS +I++QCI +
Sbjct: 226 MLRGSGVRWDLRESRPYEVYNKLSFDVPVGTSGDCYDRYLIRIEEMRQSIRIVEQCIAQI 285
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
S G + ++NK+ P R MK +ME LIHHFKLFTEGF VP G+ Y+ VE PKGEFG+
Sbjct: 286 PS--GHIKVDDNKVVKPTRPQMKRSMESLIHHFKLFTEGFVVPKGDTYAAVEAPKGEFGV 343
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YL+SDG ++PYR KI++PGFAHL L M HM++DVV IIGTQDIVFGE+DR
Sbjct: 344 YLISDGTSRPYRCKIKAPGFAHLGGLDFMSKEHMMADVVAIIGTQDIVFGEVDR 397
>gi|327195242|ref|YP_004339024.1| NADH dehydrogenase subunit 7 [Coccomyxa subellipsoidea C-169]
gi|325070738|gb|ADY75466.1| NADH dehydrogenase subunit 7 [Coccomyxa subellipsoidea C-169]
Length = 398
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 245/415 (59%), Positives = 313/415 (75%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK++ +NFGPQHPAAHGVLRL+LE+ GEVV++ADPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 11 KIKNFTINFGPQHPAAHGVLRLVLEMNGEVVKRADPHIGLLHRGTEKLIEYKTYLQALPY 70
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMMC EH Y +A+E+LL ++P+RAQYIRV+F EITR+LNHL+ + H++D+G
Sbjct: 71 FDRLDYVSMMCQEHGYSLAVERLLGCEVPLRAQYIRVLFAEITRILNHLLALTCHAMDVG 130
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGARMHAAY RPGGV +DLP
Sbjct: 131 ALTPFLWGFEEREKLMEFYERVSGARMHAAYIRPGGVAQDLPI----------------- 173
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L + I F +F IDE E +LT+NRIWKQRLV +GVV+ ++AL GF+G
Sbjct: 174 --------GLSEDIYRFARQFASRIDEMEEMLTNNRIWKQRLVDVGVVTADQALDWGFSG 225
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ WDLRK QPY++Y+ ++F +P+G GD YDRYL+R+EEMRQS ++I QC++
Sbjct: 226 VMLRGSGIGWDLRKTQPYDVYSKMDFQVPVGSRGDCYDRYLIRVEEMRQSLRMIMQCLQE 285
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ +G + S++ KIT P+R MK +ME LIHHFKL+TEGF VP GE Y+ VE PKGEFG
Sbjct: 286 M--PQGLIKSDDRKITPPSRSQMKQSMESLIHHFKLYTEGFAVPAGETYTAVEAPKGEFG 343
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++LVS+G N+PYR KIR+PGFAHLQ L M HM++DVVTIIGTQDIVFGE+DR
Sbjct: 344 VFLVSNGTNRPYRCKIRAPGFAHLQGLDFMARNHMLADVVTIIGTQDIVFGEVDR 398
>gi|110225668|ref|YP_665674.1| NADH dehydrogenase subunit 7 [Nephroselmis olivacea]
gi|11134164|sp|Q9TC96.1|NDUS2_NEPOL RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
2; AltName: Full=NADH dehydrogenase subunit 7
gi|6066183|gb|AAF03201.1|AF110138_33 NADH dehydrogenase subunit 7 [Nephroselmis olivacea]
Length = 398
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 250/415 (60%), Positives = 308/415 (74%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++K++ LNFGPQHPAAHGVLRL+LEL GEVV +ADPHIGLLHR TEKL E +TY Q+LPY
Sbjct: 11 KVKNFTLNFGPQHPAAHGVLRLVLELNGEVVARADPHIGLLHRGTEKLIEYKTYTQALPY 70
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMMC EHAY +A+EKLL+ ++P RAQYIRV+F EITR+LNHL+ + +H++D+G
Sbjct: 71 FDRLDYVSMMCQEHAYSLAVEKLLHCEVPERAQYIRVLFSEITRILNHLLALTTHAMDVG 130
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+AF ERE L++ YE VSG+RMHAAY RPGGV DLP
Sbjct: 131 ALTPFLWAFEEREKLIEFYERVSGSRMHAAYIRPGGVACDLP------------------ 172
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+L + I F +F IDE E +LT+NRIWKQRLV IG+V+ E A + GF+G
Sbjct: 173 -------ANLCEDIYLFCQQFASRIDEMEEMLTNNRIWKQRLVDIGIVTAENAFAWGFSG 225
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
+LRGSGV WDLRK QPY++YN + FD+P+G GD YDRYL R+EEMRQS II QC+
Sbjct: 226 VLLRGSGVAWDLRKTQPYDVYNRMIFDVPVGTQGDCYDRYLCRVEEMRQSIHIIMQCLNQ 285
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L KG + +++ KIT P+R MK +ME LIHHFKLFTEG+ VP E Y+ VE PKGEFG
Sbjct: 286 L--PKGMIKADDKKITPPSRSQMKQSMESLIHHFKLFTEGYTVPNSETYTSVEAPKGEFG 343
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVS+G N+PYR KIR+PGF HLQ L M HM++DVVTIIGTQDIVFGE+DR
Sbjct: 344 VYLVSNGTNRPYRCKIRAPGFLHLQGLDMMSKNHMLADVVTIIGTQDIVFGEVDR 398
>gi|9695385|ref|NP_037607.1| NADH dehydrogenase subunit 7 [Phytophthora infestans]
gi|334701711|ref|YP_004564244.1| NADH dehydrogenase subunit 7 [Phytophthora phaseoli]
gi|334701752|ref|YP_004564310.1| NADH dehydrogenase subunit 7 [Phytophthora andina]
gi|336287224|ref|YP_004564449.1| NADH dehydrogenase subunit 7 [Phytophthora ipomoeae]
gi|6692638|gb|AAF24781.1|U17009_13 NADH dehydrogenase subunit 7 [Phytophthora infestans]
gi|58012143|gb|AAW62551.1| NADH dehydrogenase subunit 7 [Phytophthora infestans]
gi|58201982|gb|AAW67037.1| NADH dehydrogenase subunit 7 [Phytophthora infestans]
gi|58202029|gb|AAW67083.1| NADH dehydrogenase subunit 7 [Phytophthora infestans]
gi|301505174|gb|ADK76218.1| NADH dehydrogenase subunit 7 [Phytophthora phaseoli]
gi|301505215|gb|ADK76258.1| NADH dehydrogenase subunit 7 [Phytophthora andina]
gi|301505256|gb|ADK76298.1| NADH dehydrogenase subunit 7 [Phytophthora ipomoeae]
Length = 392
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 254/415 (61%), Positives = 314/415 (75%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK++ +NFGPQHPAAHGVLRLILEL GEVV+KAD HIGLLHR TEKL E + YLQ+LPY
Sbjct: 5 KIKNFSINFGPQHPAAHGVLRLILELNGEVVQKADSHIGLLHRGTEKLIEYKNYLQALPY 64
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMMC EHAYV+AIEKLLN IP+RAQYIRV+F EITR+LNHL+ + H+LD+G
Sbjct: 65 FDRLDYVSMMCQEHAYVLAIEKLLNCDIPLRAQYIRVLFSEITRILNHLLAVCCHALDVG 124
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM + F ERE L++ YE VSGARMHAAY+RPGGV +DLP+
Sbjct: 125 AMTPYFWGFEEREKLMEFYERVSGARMHAAYFRPGGVNQDLPK----------------- 167
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LL+ I F ++F +DE E +LT+NRIWKQRLV IG+VS + AL++GF+G
Sbjct: 168 --------GLLNDIYIFCDQFNTRLDEIEEMLTNNRIWKQRLVDIGIVSAKDALNLGFSG 219
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ WDLRK QPYEIY+ L+FDIP+G NGD YDRYL+RIEEMRQS +II Q +
Sbjct: 220 VMLRGSGISWDLRKTQPYEIYDQLDFDIPVGTNGDCYDRYLIRIEEMRQSIRIILQILNK 279
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GP+ ++ KIT+P RI +K++ME LIHHFK ++E + GE Y+ +E PKGE+G
Sbjct: 280 IPN--GPIKLDDKKITNPNRIQIKNSMESLIHHFKYYSENISINSGETYTVIEAPKGEYG 337
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG NKPYR KI+SPGF HLQ+L + HMI+DVVTIIGT D+VFGEIDR
Sbjct: 338 VYLVSDGTNKPYRCKIKSPGFLHLQALDFLAKNHMIADVVTIIGTLDVVFGEIDR 392
>gi|145932440|ref|YP_001165352.1| NADH dehydrogenase subunit 7 [Phytophthora ramorum]
gi|110169638|gb|ABG54103.1| NADH dehydrogenase subunit 7 [Phytophthora ramorum]
gi|188038002|gb|ACD46620.1| NADH dehydrogenase subunit 7 [Phytophthora ramorum]
Length = 392
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 254/415 (61%), Positives = 313/415 (75%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK++ +NFGPQHPAAHGVLRLILEL GEVV+KAD HIGLLHR TEKL E + YLQ+LPY
Sbjct: 5 KIKNFSINFGPQHPAAHGVLRLILELNGEVVQKADSHIGLLHRGTEKLIEYKNYLQALPY 64
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMMC EHAYV+AIEKLLN IP+RAQYIRV+F EITR+LNHL+ + H+LD+G
Sbjct: 65 FDRLDYVSMMCQEHAYVLAIEKLLNCDIPLRAQYIRVLFSEITRILNHLLAVCCHALDVG 124
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM + F ERE L++ YE VSGARMHAAY+RPGGV +DLP+
Sbjct: 125 AMTPYFWGFEEREKLMEFYERVSGARMHAAYFRPGGVNQDLPK----------------- 167
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LL+ I F +F +DE E +LT+NRIWKQRLV IG+VS + AL++GF+G
Sbjct: 168 --------GLLNDIYIFCEQFNTRLDEIEEMLTNNRIWKQRLVDIGIVSAKDALNLGFSG 219
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ WDLRK QPYEIY+ L+FDIP+G NGD YDRYL+RIEEMRQS +II Q +
Sbjct: 220 VMLRGSGISWDLRKTQPYEIYDQLDFDIPVGTNGDCYDRYLIRIEEMRQSIRIILQVLNK 279
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GP+ ++ KIT+P RI +K++ME LIHHFK ++E V GE Y+ +E PKGE+G
Sbjct: 280 IPN--GPIKLDDKKITNPNRIQIKNSMESLIHHFKYYSENISVNSGETYTVIEAPKGEYG 337
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YL+SDG NKPYR KI+SPGF HLQ+L + HMI+DVVTIIGT D+VFGEIDR
Sbjct: 338 VYLISDGTNKPYRCKIKSPGFLHLQALDFIAKNHMIADVVTIIGTLDVVFGEIDR 392
>gi|145932347|ref|YP_001165395.1| NADH dehydrogenase subunit 7 [Phytophthora sojae]
gi|110169590|gb|ABG54056.1| NADH dehydrogenase subunit 7 [Phytophthora sojae]
Length = 392
Score = 520 bits (1339), Expect = e-144, Method: Compositional matrix adjust.
Identities = 254/419 (60%), Positives = 314/419 (74%), Gaps = 27/419 (6%)
Query: 275 FPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQ 334
P+ +IK++ +NFGPQHPAAHGVLRLILEL GEVV+KAD HIGLLHR TEKL E + YLQ
Sbjct: 1 MPLKKIKNFSINFGPQHPAAHGVLRLILELNGEVVQKADSHIGLLHRGTEKLIEYKNYLQ 60
Query: 335 SLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHS 394
+LPY DRLDYVSMMC EHAYV+A+EKLLN IP+RAQYIRV+F EITR+LNHL+ + H+
Sbjct: 61 ALPYFDRLDYVSMMCQEHAYVLAVEKLLNCDIPLRAQYIRVLFSEITRILNHLLAVCCHA 120
Query: 395 LDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNN 454
LD+GAM + F ERE L++ YE VSGARMHAAY+RPGGV +DLP+
Sbjct: 121 LDVGAMTPYFWGFEEREKLMEFYERVSGARMHAAYFRPGGVNQDLPK------------- 167
Query: 455 KATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSM 514
LL+ I F ++F +DE E +LT+NRIWKQRLV IGVVS + AL++
Sbjct: 168 ------------GLLNDIYIFCDQFNTRLDEIEEMLTNNRIWKQRLVDIGVVSAKDALNL 215
Query: 515 GFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQ 574
GF+G MLRGSG+ WDLRK QPYEIY+ L FD+P+G NGD YDRYL+RIEEMRQS +II Q
Sbjct: 216 GFSGVMLRGSGISWDLRKTQPYEIYDQLEFDVPVGTNGDCYDRYLIRIEEMRQSIRIILQ 275
Query: 575 CIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPK 634
+ + + GP+ ++ KIT+P R +K++ME LIHHFK ++E V GE Y+ +E PK
Sbjct: 276 VLNKIPN--GPIKLDDKKITNPNRTQIKNSMESLIHHFKYYSENISVNSGETYTVIEAPK 333
Query: 635 GEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
GE+G+YLVSDG NKPYR KI+SPGF HLQ+L + HMI+DVVTIIGT D+VFGEIDR
Sbjct: 334 GEYGVYLVSDGTNKPYRCKIKSPGFLHLQALDFIAQNHMIADVVTIIGTLDVVFGEIDR 392
>gi|11466595|ref|NP_066485.1| NADH dehydrogenase subunit 7 [Rhodomonas salina]
gi|10444182|gb|AAG17756.1|AF288090_32 NADH dehydrogenase subunit 7 [Rhodomonas salina]
Length = 399
Score = 520 bits (1339), Expect = e-144, Method: Compositional matrix adjust.
Identities = 250/414 (60%), Positives = 315/414 (76%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
IK++ +NFGPQHPAAHGVLRLILEL GE + KADPHIGLLHR TEKL E +TY+Q LPY
Sbjct: 13 IKNFTVNFGPQHPAAHGVLRLILELNGETIIKADPHIGLLHRGTEKLIENKTYIQGLPYF 72
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMM NEHA+ +AIE+LLNI++P+RAQ+IRV+F EITR+LNHL+ I H++D+GA
Sbjct: 73 DRLDYVSMMINEHAFCLAIERLLNIEVPLRAQFIRVIFSEITRILNHLLAICCHAMDVGA 132
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ +L+ F ERE L++ YE VSGARMHAAY+RPGGV +DLP +
Sbjct: 133 LTPILWGFEEREKLMEFYERVSGARMHAAYFRPGGVSQDLPLGLC--------------- 177
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
+ F E F++R IDE E LLT+NRIWKQRLV +GV++ E+AL++G TGP
Sbjct: 178 ------ADIFKFCEQFSSR----IDELEELLTENRIWKQRLVDVGVITFEQALNLGLTGP 227
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
+LR +G WDLR+ PYEIY+ L+FDIPIGKNGDSYDRY +RIEEMRQS II QC+ +
Sbjct: 228 LLRSTGFSWDLRRTHPYEIYDKLDFDIPIGKNGDSYDRYCIRIEEMRQSLSIIVQCLNNM 287
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+G NN KI+ P+R++MK +ME LIHHFK F+EGF +P G +Y+ VEHPKGEFG+
Sbjct: 288 --PQGSFKVNNMKISPPSRVDMKRSMESLIHHFKYFSEGFTIPKGIVYAAVEHPKGEFGV 345
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
LV+DG NKPYR KI++PGF HLQ+L + GH+++D+VTIIGT DIVFGEIDR
Sbjct: 346 SLVTDGTNKPYRCKIKAPGFIHLQALDFLSRGHLLADLVTIIGTLDIVFGEIDR 399
>gi|11465869|ref|NP_066418.1| NADH dehydrogenase subunit 7 [Ochromonas danica]
gi|10505202|gb|AAG18384.1|AF287134_9 NADH dehydrogenase subunit 7 [Ochromonas danica]
Length = 398
Score = 520 bits (1339), Expect = e-144, Method: Compositional matrix adjust.
Identities = 253/416 (60%), Positives = 313/416 (75%), Gaps = 27/416 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
IE+K++ +NFGPQHPAAHGVLRLILEL+GEVV KADPHIGLLHR TEKL E +TYLQ+LP
Sbjct: 10 IELKNFTINFGPQHPAAHGVLRLILELDGEVVEKADPHIGLLHRGTEKLIEFKTYLQALP 69
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y DRLDYVSMM EH Y +AIEK+ NI IP RA+ IR +F EITRLLNHL+ +G H++D+
Sbjct: 70 YFDRLDYVSMMAQEHTYSLAIEKIGNIVIPERAKIIRTIFAEITRLLNHLLAVGCHAMDV 129
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GAM L+AF ERE L++ YE VSGARMHAAY RPGGV D+P
Sbjct: 130 GAMTPFLWAFEEREKLMEFYERVSGARMHAAYIRPGGVSMDIPL---------------- 173
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
LLD + F N+F +DE E +LT +RIWK+RLV IGVVS +A+ GF+
Sbjct: 174 ---------GLLDDLYIFVNQFNYRLDEMEEMLTKSRIWKERLVDIGVVSAAKAIEWGFS 224
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
G MLRGSG+ WDLRK QPYEIY+ ++F IP+G +GD YDRYLVR+EEMRQS II +C+
Sbjct: 225 GVMLRGSGISWDLRKNQPYEIYSEIDFSIPVGNSGDCYDRYLVRVEEMRQSIYIISKCLT 284
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
++ +GP+ SNN KI+ P+R+ MK++ME +IHHFK F+EGF +P GE Y+ E PKGEF
Sbjct: 285 KIK--EGPIKSNNYKISPPSRLEMKNSMEAVIHHFKYFSEGFVLPCGETYTSTEAPKGEF 342
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVS+ KPYR KI++PGF HLQ+L++M GH+I+DVVTIIGTQDIVFGEIDR
Sbjct: 343 GVYLVSNNTEKPYRCKIKAPGFGHLQALNDMSKGHLIADVVTIIGTQDIVFGEIDR 398
>gi|334701570|ref|YP_004563943.1| NADH dehydrogenase subunit 7 [Phytophthora mirabilis]
gi|301505297|gb|ADK76338.1| NADH dehydrogenase subunit 7 [Phytophthora mirabilis]
Length = 392
Score = 519 bits (1337), Expect = e-144, Method: Compositional matrix adjust.
Identities = 253/415 (60%), Positives = 314/415 (75%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK++ +NFGPQHPAAHGVLRLILEL GEVV+KAD HIGLLHR TEKL E + YLQ+LPY
Sbjct: 5 KIKNFSINFGPQHPAAHGVLRLILELNGEVVQKADSHIGLLHRGTEKLIEYKNYLQALPY 64
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMMC EHAYV+AIEKLLN IP+RAQYIRV+F EITR+LNHL+ + H+LD+G
Sbjct: 65 FDRLDYVSMMCQEHAYVLAIEKLLNCDIPLRAQYIRVLFSEITRILNHLLAVCCHALDVG 124
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM + F ERE L++ YE VSGARMHAAY+RPGGV +DLP+
Sbjct: 125 AMTPYFWGFEEREKLMEFYERVSGARMHAAYFRPGGVNQDLPK----------------- 167
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LL+ I F ++F +DE E +LT+NRIWKQRLV IG+VS + AL++GF+G
Sbjct: 168 --------GLLNDIYIFCDQFNTRLDEIEEMLTNNRIWKQRLVDIGIVSAKDALNLGFSG 219
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ WDLRK QPYEIY+ L+FDIP+G NGD YDRYL+R+EEMRQS +II Q +
Sbjct: 220 VMLRGSGISWDLRKTQPYEIYDQLDFDIPVGTNGDCYDRYLIRMEEMRQSIRIILQILNK 279
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GP+ ++ KIT+P RI +K++ME LIHHFK ++E + GE Y+ +E PKGE+G
Sbjct: 280 IPN--GPIKLDDKKITNPNRIQIKNSMESLIHHFKYYSENISINSGETYTVIEAPKGEYG 337
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG NKPYR KI+SPGF HLQ+L + HMI+DVVTIIGT D+VFGEIDR
Sbjct: 338 VYLVSDGTNKPYRCKIKSPGFLHLQALDFLAKNHMIADVVTIIGTLDVVFGEIDR 392
>gi|22550346|ref|NP_689365.1| NADH dehydrogenase subunit 7 [Chaetosphaeridium globosum]
gi|22417012|gb|AAM96611.1|AF494279_16 NADH dehydrogenase subunit 7 [Chaetosphaeridium globosum]
Length = 393
Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust.
Identities = 249/415 (60%), Positives = 309/415 (74%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK++ LNFGPQHPAAHGVLRL+LE+ GEVV +A+PHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 6 QIKNFTLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQALPY 65
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM EHAY +A+EKLLN ++P+RAQYIRVMF EITR+LNHL+ + +H++D+G
Sbjct: 66 FDRLDYVSMMAQEHAYSLAVEKLLNCEVPLRAQYIRVMFCEITRILNHLLALTTHAMDVG 125
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+AF ERE L++ YE VSGARMHAAY RPGGV +DLP
Sbjct: 126 ALTPFLWAFEERERLMEFYERVSGARMHAAYIRPGGVAQDLPL----------------- 168
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L + I FT +F IDE E +LT+NRIWKQRLV IGVV+ + AL GF+G
Sbjct: 169 --------GLSEDIYKFTQQFASRIDELEEMLTNNRIWKQRLVDIGVVTAQDALDWGFSG 220
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ WDLRK PY++Y L+FD+P+G GD YDRY +R+EEMRQS +II QC+
Sbjct: 221 VMLRGSGINWDLRKAAPYDVYQQLDFDVPVGTRGDCYDRYCIRVEEMRQSLRIIAQCLNA 280
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + G V ++ KIT P+R MK +ME LIHHFKL+TEG VP G Y+ VE PKGEFG
Sbjct: 281 MPT--GMVKVDDRKITPPSRSQMKQSMESLIHHFKLYTEGVSVPEGSTYTAVEAPKGEFG 338
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++LVS+G N+PYR KIR+PGF HLQ+L M HM++DVVTIIGTQDIVFGE+DR
Sbjct: 339 VFLVSNGTNRPYRCKIRAPGFVHLQALDFMSKHHMLADVVTIIGTQDIVFGEVDR 393
>gi|392382094|ref|YP_005031291.1| NADH-quinone oxidoreductase, subunit D [Azospirillum brasilense
Sp245]
gi|356877059|emb|CCC97860.1| NADH-quinone oxidoreductase, subunit D [Azospirillum brasilense
Sp245]
Length = 406
Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust.
Identities = 251/415 (60%), Positives = 307/415 (73%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK Y +NFGPQHPAAHGVLRL++EL GEVV + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 19 QIKPYTMNFGPQHPAAHGVLRLVMELNGEVVERCDPHIGLLHRGTEKLIEYKTYLQAVPY 78
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVS MC EHAYV+ IE LL IK P+RAQYIRV+F EITR+LNH++ I + +LD+G
Sbjct: 79 FDRLDYVSPMCMEHAYVLGIENLLQIKAPLRAQYIRVLFSEITRILNHILSITTGALDVG 138
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE V GAR+HA Y+RPGGV DLP
Sbjct: 139 AITPALWGFEEREILMEFYERVCGARLHANYFRPGGVAWDLP------------------ 180
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L D I +FT RFPK +D+ + LLT+NRI+KQR V IGVV+ E A + GFTG
Sbjct: 181 -------AGLTDDIWEFTERFPKFVDDIDNLLTNNRIFKQRTVDIGVVTKEEAFNWGFTG 233
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV WDLRK QPYE+Y+ ++FD+P+G GD + RYLVR+EEMRQSN++I+QC+K
Sbjct: 234 PMLRGSGVAWDLRKSQPYEVYDRMDFDVPVGLTGDCWARYLVRMEEMRQSNRMIRQCLKE 293
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L +GPV + K++ P R MK +ME LIHHFKLFTEGF+VP GE Y+ +E PKGEFG
Sbjct: 294 L--PEGPVRAEERKVSPPPRGEMKRSMEALIHHFKLFTEGFHVPAGETYTAIEAPKGEFG 351
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG NKPYR KIR+PGFAHLQ L M GHM++D V I + DIVFGEIDR
Sbjct: 352 VYLVSDGTNKPYRCKIRAPGFAHLQGLDFMSKGHMLADAVANIASMDIVFGEIDR 406
>gi|319738257|emb|CBJ18033.1| NADH dehydrogenase subunit 7 [Ectocarpus siliculosus]
Length = 398
Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust.
Identities = 250/411 (60%), Positives = 306/411 (74%), Gaps = 27/411 (6%)
Query: 283 YKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRL 342
+ +NFGPQHPAAHGVLRLILEL GEVV++ADPHIGLLHR TEKL E +TY Q+LPY DRL
Sbjct: 15 FTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIEAKTYFQALPYFDRL 74
Query: 343 DYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGV 402
DYVSMMC EH Y +A+E LL I IP RAQYIRV+F EITRLLNHL+ +G H++D+GAM
Sbjct: 75 DYVSMMCQEHTYALAVENLLQISIPKRAQYIRVLFAEITRLLNHLLAVGCHAMDVGAMTP 134
Query: 403 LLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNE 462
L+AF ERE L++ YE VSGARMHA+Y+RPGGV +D+
Sbjct: 135 FLWAFEEREKLMEFYERVSGARMHASYFRPGGVSQDISL--------------------- 173
Query: 463 NRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLR 522
L+D I F +F + +DE E +LTDNRIW++RLV IGVVS + A+ GF+G MLR
Sbjct: 174 ----GLVDDIFAFVVQFGQRLDEIEEMLTDNRIWQERLVDIGVVSAQEAIDWGFSGVMLR 229
Query: 523 GSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSN 582
GSGV+WDLRK +PYEIY+ LNF +GK GD YDRYL R+EEMRQS II QC+ +
Sbjct: 230 GSGVRWDLRKNEPYEIYSDLNFQGVVGKTGDCYDRYLARVEEMRQSLSIIYQCLNNM--P 287
Query: 583 KGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLV 642
KG V ++ KI+ P+R +K +ME LIHHFKL+TEG +VP GE Y+ E PKGEFG+YLV
Sbjct: 288 KGSVKVDDAKISPPSRTEVKQSMESLIHHFKLYTEGVFVPAGETYTATEAPKGEFGVYLV 347
Query: 643 SDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
SD +N+PYR KI++PGFAHLQ L+ M S HM++DVVTIIGTQDIVFGE+DR
Sbjct: 348 SDSSNRPYRCKIKAPGFAHLQGLNFMASSHMLADVVTIIGTQDIVFGEVDR 398
>gi|113170488|ref|YP_717279.1| nad7 [Ostreococcus tauri]
gi|112806895|emb|CAL36401.1| unnamed protein product [Ostreococcus tauri]
Length = 394
Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust.
Identities = 251/419 (59%), Positives = 306/419 (73%), Gaps = 27/419 (6%)
Query: 275 FPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQ 334
F ++K++ LNFGPQHPAAHGVLRL+LE+ GEVV +ADPHIGLLHR TEKL E + Y+Q
Sbjct: 3 FEQKKLKNFTLNFGPQHPAAHGVLRLVLEMNGEVVERADPHIGLLHRGTEKLIEYKNYIQ 62
Query: 335 SLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHS 394
+LPY DRLDYVSMM EHAY +A+E LL+ +P+RAQYIRV+F EITRLLNHL+ + H+
Sbjct: 63 ALPYFDRLDYVSMMAQEHAYSLAVENLLHCPVPLRAQYIRVLFSEITRLLNHLLALSCHA 122
Query: 395 LDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNN 454
+D+GA+ L+AF ERE L++ YE VSGAR+HA+Y RPGGV +DLP+
Sbjct: 123 MDVGALTPFLWAFEEREKLMEFYERVSGARLHASYIRPGGVAQDLPQ------------- 169
Query: 455 KATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSM 514
L D + F F IDE E +LT NRIWKQRLV IG VS + A+S
Sbjct: 170 ------------GLCDDMHTFCQTFASRIDEMEEMLTQNRIWKQRLVDIGTVSAKDAISY 217
Query: 515 GFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQ 574
GF+G MLRGSGV WDLRK QPYE+Y L FDIP+G GD YDRYL+RIEEMRQS ++I Q
Sbjct: 218 GFSGVMLRGSGVAWDLRKTQPYEVYESLEFDIPVGSQGDCYDRYLIRIEEMRQSLRLIAQ 277
Query: 575 CIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPK 634
C+ L +G V ++ KI+ P+R +MK +ME LIHHFKLFTEGF VP E Y VE PK
Sbjct: 278 CLNKL--PQGLVKVDDKKISPPSRKHMKESMESLIHHFKLFTEGFIVPASETYVGVEAPK 335
Query: 635 GEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
GEFG+YLVS+G NKPYR KIR+PGF HLQ+L M H+++DVVTIIGTQDIVFGE+DR
Sbjct: 336 GEFGVYLVSNGTNKPYRCKIRAPGFVHLQALDFMSKHHLLADVVTIIGTQDIVFGEVDR 394
>gi|409052449|ref|YP_006666408.1| NADH dehydrogenase subunit 7 (mitochondrion) [Trebouxiophyceae sp.
MX-AZ01]
gi|402746064|gb|AFQ93763.1| NADH dehydrogenase subunit 7 (mitochondrion) [Trebouxiophyceae sp.
MX-AZ01]
Length = 398
Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 246/415 (59%), Positives = 311/415 (74%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++K++ +NFGPQHPAAHGVLRL+LE+ GEVV++ADPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 11 KVKNFTINFGPQHPAAHGVLRLVLEMNGEVVKRADPHIGLLHRGTEKLIEYKTYLQALPY 70
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMMC EH Y +A+E+LL ++P RAQ+IRV+F EITR+LNHL+ + H++D+G
Sbjct: 71 FDRLDYVSMMCQEHGYSLAVERLLGSEVPERAQHIRVLFAEITRILNHLLALTCHAMDVG 130
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGARMHAAY RPGGV +DLP
Sbjct: 131 ALTPFLWGFEEREKLMEFYERVSGARMHAAYIRPGGVAQDLPI----------------- 173
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L + I F +F IDE E +LT NRIWKQRLV +GVVS ++AL GF+G
Sbjct: 174 --------GLSEDIYRFARQFASRIDEMEEMLTSNRIWKQRLVDVGVVSADQALDWGFSG 225
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ WDLRK QPY+IY+ ++F IP+G GD YDRYL+R+EEMRQS +II QC++
Sbjct: 226 VMLRGSGIGWDLRKTQPYDIYDKIDFQIPVGSRGDCYDRYLIRVEEMRQSLRIIMQCLQD 285
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ +G + +++ KIT P+R MK +ME LIHHFKL+TEGF VP GE Y+ VE PKGEFG
Sbjct: 286 M--PQGVIKADDRKITPPSRSQMKGSMESLIHHFKLYTEGFVVPAGETYTAVEAPKGEFG 343
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++LVS+G N+PYR KIR+PGFAHLQ L M HM++DVVTIIGTQDIVFGE+DR
Sbjct: 344 VFLVSNGTNRPYRCKIRAPGFAHLQGLDFMARNHMLADVVTIIGTQDIVFGEVDR 398
>gi|339319422|ref|YP_004679117.1| NADH:ubiquinone oxidoreductase subunit D [Candidatus Midichloria
mitochondrii IricVA]
gi|338225547|gb|AEI88431.1| NADH:ubiquinone oxidoreductase subunit D [Candidatus Midichloria
mitochondrii IricVA]
Length = 391
Score = 516 bits (1329), Expect = e-143, Method: Compositional matrix adjust.
Identities = 255/416 (61%), Positives = 309/416 (74%), Gaps = 27/416 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
IE K+ +N GPQHPAAHGVLRLILE++GEV+ +ADPHIGLLHR TEKL E +TYLQ+LP
Sbjct: 3 IETKNISINLGPQHPAAHGVLRLILEMDGEVIERADPHIGLLHRGTEKLIEYKTYLQALP 62
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y DRLDYVS M EH + +A+EKLL ++P RA+YIRV+F EITR+LNH + I + +LD+
Sbjct: 63 YFDRLDYVSPMSQEHCFALAVEKLLGCEVPERAKYIRVLFCEITRILNHSLNITTQALDV 122
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GAM LL+ F ERE L++ YE SGAR+HAAY RPGGV +DLP
Sbjct: 123 GAMTPLLWLFEEREKLMEFYERASGARLHAAYIRPGGVTQDLPT---------------- 166
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
LL+ I F FPK ID+ E LLTDNRI+KQRLV IGVV+ E+AL GF+
Sbjct: 167 ---------DLLEDIHKFIQSFPKMIDDTEGLLTDNRIFKQRLVDIGVVTKEQALDYGFS 217
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GPMLRGSG+ WDLRK QPYEIY+ L+F +PIGKNGD YDRYLVRIEEMR+S KII+QCI+
Sbjct: 218 GPMLRGSGIAWDLRKAQPYEIYDQLDFRVPIGKNGDCYDRYLVRIEEMRESLKIIEQCIE 277
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+ + GP+ + + KI P R K++ME LIHHFKL+TEG+ +P GE Y+ VE PKGEF
Sbjct: 278 KMPA--GPIKTLDRKIAPPPRAETKTSMEALIHHFKLYTEGYDIPKGETYTAVEAPKGEF 335
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG+NKPYR IR+PGFAHLQ L M GHM++DVV IGT DIVFGEIDR
Sbjct: 336 GVYLVSDGSNKPYRCHIRAPGFAHLQGLEFMSKGHMLADVVANIGTLDIVFGEIDR 391
>gi|82658272|ref|NP_001032494.1| uncharacterized protein LOC641476 [Danio rerio]
Length = 462
Score = 516 bits (1329), Expect = e-143, Method: Compositional matrix adjust.
Identities = 245/415 (59%), Positives = 313/415 (75%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++ + +LNFGPQHPAAHGVLRL+LEL+GE V +ADPHIGLLHR TEKL E +TY+Q+LPY
Sbjct: 75 KVANLQLNFGPQHPAAHGVLRLVLELDGETVLRADPHIGLLHRGTEKLIEYKTYMQALPY 134
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMMCNE Y +A+EKLLN+++P+RA+YIR MF EITR+LNHLM +G+H+LDIG
Sbjct: 135 FDRLDYVSMMCNEQCYSLAVEKLLNLEVPLRAKYIRTMFAEITRILNHLMQVGTHALDIG 194
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ + F ERE +++ YE VSGARMHAAY RPGGVY DLP
Sbjct: 195 ALTPFFWLFEEREKMMEFYERVSGARMHAAYVRPGGVYLDLPL----------------- 237
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L+D I F +F + +DE E +LT+NRIWKQR V IGVVS E AL+ GF+G
Sbjct: 238 --------GLMDDIYTFIKQFGQRLDEVEDVLTENRIWKQRTVDIGVVSAEDALNWGFSG 289
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+KWDLRK QPY+ Y++++FDIPIG GD YDRYL R+EEMRQS +II+QC+
Sbjct: 290 VMLRGSGIKWDLRKSQPYDAYDVVDFDIPIGTKGDCYDRYLCRMEEMRQSLRIIEQCLN- 348
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ G + ++++K+ P R MKS+ME LIHHFKL+TEGF VP G+ Y+ +E PKGEFG
Sbjct: 349 -KMPAGEIRADDSKVVPPKRGEMKSSMESLIHHFKLYTEGFNVPPGQTYTAIEAPKGEFG 407
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG+++PYR KI++PGFAHL +L + HM++D+V IIGT D+VFGEIDR
Sbjct: 408 VYLVSDGSSRPYRCKIKAPGFAHLAALDYIGRNHMLADIVAIIGTLDVVFGEIDR 462
>gi|91208870|ref|YP_539031.1| NADH dehydrogenase subunit 7 [Physcomitrella patens]
gi|11559309|dbj|BAB18862.1| NADH dehydrogenase [Physcomitrella patens]
gi|90991410|dbj|BAE93102.1| NADH dehydrogenase subunit 7 (mitochondrion) [Physcomitrella
patens]
Length = 393
Score = 516 bits (1329), Expect = e-143, Method: Compositional matrix adjust.
Identities = 248/418 (59%), Positives = 309/418 (73%), Gaps = 33/418 (7%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK++ LNFGPQHPAAHGVLRL+LE+ GEVV +A+PHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 6 QIKNFTLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQALPY 65
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM EHAY +A+EKL N ++P+RAQYIRV+F EITR+LNHL+ + +H++D+G
Sbjct: 66 FDRLDYVSMMAQEHAYSLAVEKLCNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMDVG 125
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+AF ERE LL+ YE VSGARMHA+Y RPGGV +D+P
Sbjct: 126 ALTPFLWAFEEREKLLEFYERVSGARMHASYIRPGGVAQDMP------------------ 167
Query: 459 ILNENRQGSLLDFIED---FTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMG 515
L ED FT +F IDE E +LT+NRIWKQRLV IG V+ ++AL G
Sbjct: 168 ----------LGLSEDIFLFTQQFASRIDEIEEMLTNNRIWKQRLVDIGTVTAQQALDWG 217
Query: 516 FTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQC 575
F+G MLRGSGV WDLRK PY++YN L+FD+P+G GD YDRY +RIEEMRQS +II QC
Sbjct: 218 FSGVMLRGSGVCWDLRKSAPYDVYNQLSFDVPVGTRGDCYDRYCIRIEEMRQSIRIIMQC 277
Query: 576 IKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
+ + S G + +++ K+ P+R MK +ME LIHHFKL+TEGF VP Y+ VE PKG
Sbjct: 278 LNQMPS--GMIKADDRKLCPPSRSQMKQSMESLIHHFKLYTEGFSVPASSTYTAVEAPKG 335
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFG++LVS+G N+PYR KIR+PGFAHLQ L M HM++DVVTIIGTQDIVFGE+DR
Sbjct: 336 EFGVFLVSNGTNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 393
>gi|353526568|ref|YP_004927637.1| NADH dehydrogenase subunit 7 (mitochondrion) [Anomodon rugelii]
gi|336089494|gb|AEH99684.1| NADH dehydrogenase subunit 7 [Anomodon rugelii]
Length = 393
Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust.
Identities = 249/418 (59%), Positives = 308/418 (73%), Gaps = 33/418 (7%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK++ LNFGPQHPAAHGVLRL+LE+ GEVV +A+PHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 6 QIKNFTLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQALPY 65
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM EHAY +A+EKL N ++P+RAQYIRV+F EITR+LNHL+ + +H++D+G
Sbjct: 66 FDRLDYVSMMAQEHAYSLAVEKLCNCEVPLRAQYIRVLFREITRILNHLLALTTHAMDVG 125
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+AF ERE LL+ YE VSGARMHA+Y RPGGV +D+P
Sbjct: 126 ALTPFLWAFEEREKLLEFYERVSGARMHASYIRPGGVAQDMP------------------ 167
Query: 459 ILNENRQGSLLDFIED---FTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMG 515
L ED FT +F IDE E +LT+NRIWKQRLV IG V+ ++AL G
Sbjct: 168 ----------LGLSEDIFLFTQQFASRIDEIEEMLTNNRIWKQRLVDIGTVTAQQALDWG 217
Query: 516 FTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQC 575
F+G MLRGSGV WDLRK PY++YN L FD+P+G GD YDRY +RIEEMRQS +II QC
Sbjct: 218 FSGVMLRGSGVCWDLRKSAPYDVYNQLIFDVPVGTRGDCYDRYCIRIEEMRQSIRIIMQC 277
Query: 576 IKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
+ + S G + +++ K+ P+R MK +ME LIHHFKL+TEGF VP Y+ VE PKG
Sbjct: 278 LNQMPS--GMIKADDRKLCPPSRSQMKQSMESLIHHFKLYTEGFSVPASSTYTAVEAPKG 335
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFG++LVS+G N+PYR KIR+PGFAHLQ L M HM+SDVVTIIGTQDIVFGE+DR
Sbjct: 336 EFGVFLVSNGTNRPYRCKIRAPGFAHLQGLDFMSKHHMLSDVVTIIGTQDIVFGEVDR 393
>gi|74006138|ref|XP_536138.2| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial isoform 2 [Canis lupus familiaris]
Length = 463
Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust.
Identities = 245/414 (59%), Positives = 309/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+ + LNFGPQHPAAHGVLRL++EL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 77 VTNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 136
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITRLLNH+M + +H+LDIGA
Sbjct: 137 DRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRLLNHIMAVTTHALDIGA 196
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 197 MTPFFWMFEEREKMFEFYERVSGARMHAAYVRPGGVHQDLPL------------------ 238
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I +F+ F +DE E +LT+NRIWK R V IGVV+ E AL+ GF+G
Sbjct: 239 -------GLMDDIYEFSKNFSLRVDELEEMLTNNRIWKNRTVDIGVVTAEDALNYGFSGV 291
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ ++FD+PIG GD YDRYL R+EEMRQS +II+QC+
Sbjct: 292 MLRGSGIQWDLRKTQPYDVYDQVDFDVPIGSRGDCYDRYLCRVEEMRQSLRIIEQCLN-- 349
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 350 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 409
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGTQDIVFGE+DR
Sbjct: 410 YLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
>gi|402856878|ref|XP_003893006.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial isoform 1 [Papio anubis]
gi|402856880|ref|XP_003893007.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial isoform 2 [Papio anubis]
Length = 463
Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust.
Identities = 244/414 (58%), Positives = 310/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+K+ LNFGPQHPAAHGVLRL++EL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 77 VKNMTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 136
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITRLLNH+M + +H+LD+GA
Sbjct: 137 DRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGA 196
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M L + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 197 MTPLFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPL------------------ 238
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I +F+ F +DE E +LT+NRIW+ R + IGVV+ E AL+ GF+G
Sbjct: 239 -------GLMDDIYEFSKNFSLRLDELEEMLTNNRIWRNRTIDIGVVTAEEALNYGFSGV 291
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ ++FD+PIG GD YDRYL R+EEMRQS +II QC+
Sbjct: 292 MLRGSGIQWDLRKTQPYDVYDQVDFDVPIGSRGDCYDRYLCRVEEMRQSLRIITQCLN-- 349
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 350 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 409
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGTQDIVFGE+DR
Sbjct: 410 YLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
>gi|58865384|ref|NP_001011907.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial precursor [Rattus norvegicus]
gi|392352848|ref|XP_003751325.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Rattus norvegicus]
gi|81890431|sp|Q641Y2.1|NDUS2_RAT RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
2, mitochondrial; AltName: Full=Complex I-49kD;
Short=CI-49kD; AltName: Full=NADH-ubiquinone
oxidoreductase 49 kDa subunit; Flags: Precursor
gi|51980672|gb|AAH82067.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2 [Rattus norvegicus]
Length = 463
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 247/414 (59%), Positives = 308/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+ + LNFGPQHPAAHGVLRL+LEL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 77 VTNVTLNFGPQHPAAHGVLRLVLELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 136
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITR+LNH+M + +H+LDIGA
Sbjct: 137 DRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRILNHIMAVTTHALDIGA 196
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 197 MTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPL------------------ 238
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I +F+ F IDE E +LT+NRIW+ R V IGVVS E AL+ GF+G
Sbjct: 239 -------GLMDDIYEFSKNFSLRIDEVEEMLTNNRIWRNRTVDIGVVSAEDALNYGFSGV 291
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ + FD+PIG GD YDRYL R+EEMRQS +II+QC+
Sbjct: 292 MLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEEMRQSLRIIEQCLN-- 349
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 350 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 409
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGTQDIVFGEIDR
Sbjct: 410 YLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEIDR 463
>gi|84508588|ref|YP_448636.1| NADH dehydrogenase subunit 7 [Fucus vesiculosus]
gi|39653311|gb|AAR29330.1| NADH dehydrogenase subunit 7 (mitochondrion) [Fucus vesiculosus]
Length = 398
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 245/413 (59%), Positives = 309/413 (74%), Gaps = 27/413 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
+ + +NFGPQHPAAHGVLRLILEL GEVV++ADPHIGLLHR TEKL E +TY+Q+LPY D
Sbjct: 13 QHFTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIEAKTYVQALPYFD 72
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYVSMMC EH YV+A+E LL + IP RAQYIRV+F EITR+LNHL+ +G H++D+GAM
Sbjct: 73 RLDYVSMMCQEHTYVLAVENLLQVSIPRRAQYIRVLFAEITRILNHLLAVGCHAMDVGAM 132
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
L++F ERE L++ YE VSGARMHA+Y+RPGGV +D+
Sbjct: 133 TPFLWSFEEREKLMEFYERVSGARMHASYFRPGGVSQDISL------------------- 173
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
++D I F +F + +DE E +LTDNRIW++RLV IGVV+ + A++ GF+G M
Sbjct: 174 ------GIVDDIYTFAGQFGQRLDEMEEMLTDNRIWQERLVDIGVVTAQEAVNWGFSGVM 227
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
LRGSGV+WDLRK +PYE+Y+ LNF +GK GD YDRYL R+EEMRQS II QC+ +
Sbjct: 228 LRGSGVRWDLRKNEPYEVYSELNFRGVVGKTGDCYDRYLARVEEMRQSLSIIHQCLNNM- 286
Query: 581 SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIY 640
KG V ++ KI+ P+R +K NME LIHHFKL+TEG VP GE Y+ E PKGEFG+Y
Sbjct: 287 -PKGSVKIDDAKISPPSRSEVKQNMESLIHHFKLYTEGVSVPSGETYTATEAPKGEFGVY 345
Query: 641 LVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
LVSDG+N+PYR KI++PGF+HLQ L+ M HM++DVVTIIGTQDIVFGE+DR
Sbjct: 346 LVSDGSNRPYRCKIKAPGFSHLQGLNFMAKSHMLADVVTIIGTQDIVFGEVDR 398
>gi|395535371|ref|XP_003769700.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Sarcophilus harrisii]
Length = 592
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 245/416 (58%), Positives = 308/416 (74%), Gaps = 27/416 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
I++ + LNFGPQHPAAHGVLRL++EL GE+VRK DPHIGLLHR TEKL E +TYLQ+LP
Sbjct: 204 IKVANVTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALP 263
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y DRLDYVSMMCNE Y +A+EKLLNI+ P+RAQ+IRV+F EITRLLNH+M + +H+LDI
Sbjct: 264 YFDRLDYVSMMCNEQCYSLAVEKLLNIQPPLRAQWIRVLFGEITRLLNHIMALTTHALDI 323
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GAM + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 324 GAMTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPL---------------- 367
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
L+D I +F F IDE E +LT+NRIW+ R V IGVV+ E AL+ GF+
Sbjct: 368 ---------GLMDDIYEFAKNFSIRIDELEEMLTNNRIWRNRTVDIGVVTAEEALNYGFS 418
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
G MLRGSG++WDLRK QPY++Y+ + FD+PIG GD YDRYL R+EEMRQS +II QC+
Sbjct: 419 GVMLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEEMRQSLRIIHQCLN 478
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEF
Sbjct: 479 --KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEF 536
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGTQDIVFGE+DR
Sbjct: 537 GVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 592
>gi|149759791|ref|XP_001503853.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial-like isoform 1 [Equus caballus]
Length = 463
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 246/414 (59%), Positives = 307/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+ + LNFGPQHPAAHGVLRL++EL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 77 VSNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 136
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITRLLNH+M + +H+LDIGA
Sbjct: 137 DRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRLLNHIMAVTTHALDIGA 196
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 197 MTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPL------------------ 238
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I +F+ F IDE E +LT+NRIW+ R V IGVV+ E AL+ GF+G
Sbjct: 239 -------GLMDDIYEFSKNFSLRIDELEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGV 291
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ + FD+PIG GD YDRYL R+EEMRQS +II QC+
Sbjct: 292 MLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEEMRQSVRIISQCLN-- 349
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
R G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 350 RMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 409
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGTQDIVFGE+DR
Sbjct: 410 YLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
>gi|412994379|emb|CCO13955.1| NADH dehydrogenase subunit 7 [Bathycoccus prasinos]
Length = 398
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 244/421 (57%), Positives = 308/421 (73%), Gaps = 27/421 (6%)
Query: 273 KDFPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTY 332
++ P + K++ LNFGPQHPAAHGVLRLILE+ GE+V +ADPHIGLLHR TEKL E + Y
Sbjct: 5 QNSPGKKFKNFTLNFGPQHPAAHGVLRLILEMNGEIVERADPHIGLLHRGTEKLIEYKNY 64
Query: 333 LQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGS 392
+Q+LPY DRLDYVS M EH Y + +EKLL+ ++P+RAQYIRV+F EITR+LNHL+ +
Sbjct: 65 MQALPYFDRLDYVSTMAQEHGYSLTVEKLLHCQVPLRAQYIRVLFAEITRILNHLLALSC 124
Query: 393 HSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIR 452
H++D+GA+ L+AF ERE L++ YE VSGAR HAAY RPGGV +DLP+
Sbjct: 125 HAMDVGALTPFLWAFEEREKLMEFYERVSGARFHAAYIRPGGVAQDLPQ----------- 173
Query: 453 NNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERAL 512
L D + F F IDE E +LT+NRIWKQRLV IG V+ + A+
Sbjct: 174 --------------GLCDDLHKFCQTFASRIDEMEEMLTNNRIWKQRLVDIGTVTADEAI 219
Query: 513 SMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKII 572
GF+G MLRGSGV WDLRK QPY++Y+ L FDIP+G GD YDRYL+RIEEMRQS K+I
Sbjct: 220 QWGFSGVMLRGSGVSWDLRKTQPYDVYSDLQFDIPVGTQGDCYDRYLIRIEEMRQSLKLI 279
Query: 573 KQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEH 632
+C+ L +GP+ ++ KIT P++ ++K +ME LIHHFKL+TEGF VP E Y+ VE
Sbjct: 280 AECLNKL--PQGPIKVDDRKITPPSKSHVKESMESLIHHFKLYTEGFVVPASETYTAVEA 337
Query: 633 PKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEID 692
PKGEFG+YLVS+G NKPYR KIR+PGF HLQ+L M H+++DVVTIIGTQDIVFGE+D
Sbjct: 338 PKGEFGVYLVSNGTNKPYRCKIRAPGFVHLQALDFMAKKHLLADVVTIIGTQDIVFGEVD 397
Query: 693 R 693
R
Sbjct: 398 R 398
>gi|417401373|gb|JAA47575.1| Putative nadh:ubiquinone oxidoreductase ndufs2/49 kda subunit
[Desmodus rotundus]
Length = 463
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 244/414 (58%), Positives = 310/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+ + LNFGPQHPAAHGVLRL++EL GE+VR+ DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 77 VSNLTLNFGPQHPAAHGVLRLVMELSGEMVRRCDPHIGLLHRGTEKLIEYKTYLQALPYF 136
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P+RAQ+IRV+F EITRLLNH+M + +H+LDIGA
Sbjct: 137 DRLDYVSMMCNEQAYSLAVEKLLNIQPPLRAQWIRVLFGEITRLLNHIMAVTTHALDIGA 196
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 197 MTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPL------------------ 238
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I F+ F IDE E +LT+NRIW+ R V IGVV+ E AL+ GF+G
Sbjct: 239 -------GLMDDIYQFSKNFSLRIDELEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGV 291
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ ++FD+PIG +GD YDRYL R+EEMRQS +II+QC+
Sbjct: 292 MLRGSGIQWDLRKTQPYDVYDQVDFDVPIGSHGDCYDRYLCRVEEMRQSLRIIEQCLN-- 349
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 350 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 409
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGTQDIVFGE+DR
Sbjct: 410 YLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
>gi|402496570|ref|YP_006555830.1| NADH dehydrogenase subunit D [Wolbachia endosymbiont of Onchocerca
ochengi]
gi|398649843|emb|CCF78013.1| NADH dehydrogenase subunit D [Wolbachia endosymbiont of Onchocerca
ochengi]
Length = 390
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 243/415 (58%), Positives = 311/415 (74%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++K+ LNFGPQHPAAHGVLRL+LE++GEV+ +ADPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 3 DLKTMMLNFGPQHPAAHGVLRLVLEMDGEVIERADPHIGLLHRGTEKLIEHKTYLQALPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVS M EHAY + +EKLL ++PIRA+Y+RV+F E+TR+LNHL+ I S +LD+G
Sbjct: 63 FDRLDYVSPMSQEHAYSLCVEKLLQCEVPIRAKYLRVLFCELTRILNHLLNISSQALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM LL+ F ERE +L+ YE SGAR HAAY RPGG+ D+PE
Sbjct: 123 AMTPLLWLFEEREKILEFYERASGARFHAAYIRPGGIAADVPE----------------- 165
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L++ I F +FPK ID+ + LLT+NRIWKQR VGI +S ++ L GF+G
Sbjct: 166 --------GLIEDIAKFIEQFPKYIDDVDDLLTENRIWKQRTVGISKMSIKQVLDWGFSG 217
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLR +G+ WDLRK QPYE+Y+ L+FDIPIG+NGD YDRYLVR+EE+RQS ++KQCI+
Sbjct: 218 PMLRAAGLAWDLRKSQPYEVYDQLDFDIPIGRNGDCYDRYLVRMEEIRQSTSLVKQCIE- 276
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ +GPV + + KI+ P R MK +ME LIHHFKL++EG++VP GE Y+ VE PKGEFG
Sbjct: 277 -KMPRGPVKTEDRKISPPPRAEMKKSMEALIHHFKLYSEGYHVPEGETYAAVEAPKGEFG 335
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDG N+PYR +IR+PGFAHLQ+L M GHM+SD+ IIG+ DIVFGEIDR
Sbjct: 336 VYIVSDGTNQPYRCRIRAPGFAHLQALDFMAKGHMLSDIAAIIGSLDIVFGEIDR 390
>gi|83311883|ref|YP_422147.1| NADH dehydrogenase subunit D [Magnetospirillum magneticum AMB-1]
gi|123541539|sp|Q2W3I7.1|NUOD_MAGMM RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|82946724|dbj|BAE51588.1| NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Magnetospirillum
magneticum AMB-1]
Length = 392
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 251/415 (60%), Positives = 301/415 (72%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+SY +NFGPQHPAAHGVLRLILE+ GEVV +ADPH+GLLHR TEKL E +TYLQ+ PY
Sbjct: 5 QIQSYTINFGPQHPAAHGVLRLILEMSGEVVDRADPHVGLLHRGTEKLIEHKTYLQATPY 64
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV M EHA+V+A EKLL I IPIRA++IR ++DEI R+LNHL+ + + D+G
Sbjct: 65 FDRLDYVGTMNQEHAFVLATEKLLGIDIPIRAKFIRTLYDEIGRILNHLLNVTAFIFDVG 124
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
M LLY F ERE L++ YE V GAR+HA YYRPGGV DLP
Sbjct: 125 GMTPLLYGFEEREKLMEFYERVCGARLHANYYRPGGVAADLP------------------ 166
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LL+ I + FPK +D+ ETL TDNRI+KQR+V IGVVSPE+AL GFTG
Sbjct: 167 -------AGLLEDIAAWCETFPKVLDDIETLATDNRIFKQRVVDIGVVSPEQALDWGFTG 219
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
P LR SG+ WDLRK QPY++Y+ + FDIP+GKNGD YDRYLVR+ EMR+S KI+KQCI
Sbjct: 220 PNLRASGIAWDLRKSQPYDVYDQMEFDIPVGKNGDGYDRYLVRVLEMRESVKIMKQCIAK 279
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ GPV +NKIT P R MK++ME LIHHFKLFTEGF VP GE+Y +E PKGEF
Sbjct: 280 MPG--GPVRVEDNKITPPKRSEMKTSMESLIHHFKLFTEGFKVPAGEVYGAIEAPKGEFA 337
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG KPYR KIR PG+ HLQ+L M GHM++DVV IG+ DIVFGEIDR
Sbjct: 338 VYLVSDGTGKPYRCKIRPPGYVHLQALDMMSKGHMLADVVANIGSIDIVFGEIDR 392
>gi|431916116|gb|ELK16370.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Pteropus alecto]
Length = 463
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 245/414 (59%), Positives = 309/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+ + LNFGPQHPAAHGVLRL++EL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 77 VSNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 136
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITRLLNH+M + +H+LDIGA
Sbjct: 137 DRLDYVSMMCNEQAYSLAVEKLLNIQAPPRAQWIRVLFGEITRLLNHIMAVTTHALDIGA 196
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 197 MTPFFWMFEEREKMFEFYERVSGARMHAAYVRPGGVHQDLPL------------------ 238
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I +F+ F IDE E +LT+NRIW+ R V IGVV+ E AL+ GF+G
Sbjct: 239 -------GLMDDIYEFSKNFSLRIDELEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGV 291
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ ++FD+PIG +GD YDRYL R+EEMRQS +II QC+
Sbjct: 292 MLRGSGIQWDLRKTQPYDVYDQVDFDVPIGSHGDCYDRYLCRVEEMRQSLRIILQCLN-- 349
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 350 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 409
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGTQDIVFGE+DR
Sbjct: 410 YLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
>gi|384475937|ref|NP_001245114.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Macaca mulatta]
gi|380788983|gb|AFE66367.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial isoform 1 precursor [Macaca mulatta]
gi|380807979|gb|AFE75865.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial isoform 1 precursor [Macaca mulatta]
gi|380813050|gb|AFE78399.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial isoform 1 precursor [Macaca mulatta]
gi|384942342|gb|AFI34776.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial isoform 1 precursor [Macaca mulatta]
Length = 463
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 243/414 (58%), Positives = 310/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+K+ LNFGPQHPAAHGVLRL++EL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 77 VKNMTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 136
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITRLLNH+M + +H+LD+GA
Sbjct: 137 DRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGA 196
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M L + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 197 MTPLFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPL------------------ 238
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I +F+ F +DE E +LT+NRIW+ R + IGVV+ E AL+ GF+G
Sbjct: 239 -------GLMDDIYEFSKNFSLRLDELEEMLTNNRIWRNRTIDIGVVTAEEALNYGFSGV 291
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ ++FD+P+G GD YDRYL R+EEMRQS +II QC+
Sbjct: 292 MLRGSGIQWDLRKTQPYDVYDQVDFDVPVGSRGDCYDRYLCRVEEMRQSLRIIVQCLN-- 349
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 350 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 409
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGTQDIVFGE+DR
Sbjct: 410 YLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
>gi|13278096|gb|AAH03898.1| Ndufs2 protein, partial [Mus musculus]
Length = 470
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 247/414 (59%), Positives = 308/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+ + LNFGPQHPAAHGVLRL+LEL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 84 VTNMTLNFGPQHPAAHGVLRLVLELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 143
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITR+LNH+M + +H+LDIGA
Sbjct: 144 DRLDYVSMMCNEQAYSIAVEKLLNIQPPPRAQWIRVLFGEITRILNHIMAVTTHALDIGA 203
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 204 MTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPL------------------ 245
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD I +F+ F IDE E +LT+NRIW+ R V IGVV+ E AL+ GF+G
Sbjct: 246 -------GLLDDIYEFSKNFSLRIDEVEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGV 298
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ + FD+PIG GD YDRYL R+EEMRQS +II+QC+
Sbjct: 299 MLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEEMRQSLRIIEQCLN-- 356
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 357 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 416
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGTQDIVFGEIDR
Sbjct: 417 YLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEIDR 470
>gi|148707168|gb|EDL39115.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, isoform CRA_a [Mus
musculus]
Length = 436
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 247/414 (59%), Positives = 308/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+ + LNFGPQHPAAHGVLRL+LEL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 50 VTNMTLNFGPQHPAAHGVLRLVLELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 109
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITR+LNH+M + +H+LDIGA
Sbjct: 110 DRLDYVSMMCNEQAYSIAVEKLLNIQPPPRAQWIRVLFGEITRILNHIMAVTTHALDIGA 169
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 170 MTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPL------------------ 211
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD I +F+ F IDE E +LT+NRIW+ R V IGVV+ E AL+ GF+G
Sbjct: 212 -------GLLDDIYEFSKNFSLRIDEVEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGV 264
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ + FD+PIG GD YDRYL R+EEMRQS +II+QC+
Sbjct: 265 MLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEEMRQSLRIIEQCLN-- 322
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 323 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 382
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGTQDIVFGEIDR
Sbjct: 383 YLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEIDR 436
>gi|260790071|ref|XP_002590067.1| hypothetical protein BRAFLDRAFT_114745 [Branchiostoma floridae]
gi|229275255|gb|EEN46078.1| hypothetical protein BRAFLDRAFT_114745 [Branchiostoma floridae]
Length = 469
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 243/422 (57%), Positives = 310/422 (73%), Gaps = 27/422 (6%)
Query: 272 RKDFPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRT 331
R P IE+ + +NFGPQHPAAHGVLRL++EL GE V++ DPHIGLLHR TEKL E +T
Sbjct: 75 RDPTPDIEVSNLTVNFGPQHPAAHGVLRLVMELSGESVKRCDPHIGLLHRGTEKLIEYKT 134
Query: 332 YLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIG 391
YLQ+LPY DRLDYVSMMCNE Y +A+EKLL I+IP RA++IRVMF EITR+LNH+M +G
Sbjct: 135 YLQALPYFDRLDYVSMMCNEQCYSLAVEKLLGIEIPERAKFIRVMFGEITRILNHIMGVG 194
Query: 392 SHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSII 451
+H+LD+GAM + F ERE +++ YE VSGARMHAAY RPGGV +DLP
Sbjct: 195 THALDVGAMTPFFWMFEEREKMMEFYERVSGARMHAAYVRPGGVQQDLPL---------- 244
Query: 452 RNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERA 511
L+D I DF +F + +DE E +LT+NRIW+ R + IGV+S E A
Sbjct: 245 ---------------GLMDDIYDFITKFAQRVDEVEEMLTNNRIWRNRTIDIGVISAEDA 289
Query: 512 LSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKI 571
++ GF+G MLRGSG+KWDLRK QPY+ Y+ + FD+PIG+ GD YDRYL+R+EEMRQS I
Sbjct: 290 INYGFSGVMLRGSGIKWDLRKVQPYDAYDQVEFDVPIGRKGDCYDRYLIRVEEMRQSLHI 349
Query: 572 IKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVE 631
I QC+ + +G + ++ KIT P R MK +ME LIHHFKL+TEG+ VP G Y+ +E
Sbjct: 350 IHQCLN--KMPEGEIKVDDAKITPPRRAEMKESMEALIHHFKLYTEGYMVPPGSTYTAIE 407
Query: 632 HPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEI 691
PKGEFG+YLVSDG+++PYR KI++PGFAHL L ++ GHM++DVV IIGT D+VFGEI
Sbjct: 408 APKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKVSQGHMLADVVAIIGTLDVVFGEI 467
Query: 692 DR 693
DR
Sbjct: 468 DR 469
>gi|158286683|ref|XP_308864.3| AGAP006891-PA [Anopheles gambiae str. PEST]
gi|157020586|gb|EAA03959.4| AGAP006891-PA [Anopheles gambiae str. PEST]
Length = 471
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 262/483 (54%), Positives = 334/483 (69%), Gaps = 37/483 (7%)
Query: 215 RVFAENNELP-RLHSITSLWSSANWYEREAF-DLFG--IFFDGHDDLRRLLTDYGFVGHP 270
R +N P RLH + ++ W+ E F + F + + H R L + P
Sbjct: 22 RGLLQNVTAPYRLHQQPAR-AAGKWFPDEQFIEQFKGPVMYPDHVTARWKLPPWNSKIAP 80
Query: 271 FRKDFPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQR 330
K ++++ K+NFGPQHPAAHGVLRL+LEL+GE V +ADPHIGLLHR TEKL E +
Sbjct: 81 VEK-----QVRNLKINFGPQHPAAHGVLRLVLELDGETVMRADPHIGLLHRGTEKLIEYK 135
Query: 331 TYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWI 390
TY+Q+LPY DRLDYVSMMCNE Y +A+EKLLNI+IP RA+YIRV+F EITR+LNH+M I
Sbjct: 136 TYVQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEIPPRAKYIRVLFAEITRILNHIMAI 195
Query: 391 GSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSI 450
G+H+LD+GA+ + F ERE +++ YE VSGARMHAAY RPGGV +D+P
Sbjct: 196 GTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYVRPGGVAQDIPL--------- 246
Query: 451 IRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPER 510
LLD I DF RF + +DE E +LT NRIW QR V IGVV+ E
Sbjct: 247 ----------------GLLDDIYDFAVRFGERLDEVEDVLTSNRIWVQRTVNIGVVTAED 290
Query: 511 ALSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNK 570
AL+ GF+G MLRGSG+KWDLRK QPY+ Y+ + FD+PIG GD YDRYL RIEEMRQS +
Sbjct: 291 ALNYGFSGVMLRGSGIKWDLRKVQPYDAYDQMEFDVPIGTKGDCYDRYLCRIEEMRQSLR 350
Query: 571 IIKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCV 630
II QC+ R G + +++ KI+ P+R MK +ME LIHHFKLFT+G+ VP G Y+ V
Sbjct: 351 IIDQCLN--RMPAGEIKTDDGKISPPSRTEMKQSMEALIHHFKLFTQGYQVPPGSTYTAV 408
Query: 631 EHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGE 690
E PKGEFG+YLVSDG+++PYR KI++PGFAHL +L ++ HM++DVV IIGT D+VFGE
Sbjct: 409 EAPKGEFGVYLVSDGSSQPYRCKIKAPGFAHLAALDKIGRHHMLADVVAIIGTLDVVFGE 468
Query: 691 IDR 693
IDR
Sbjct: 469 IDR 471
>gi|23346461|ref|NP_694704.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial precursor [Mus musculus]
gi|47117273|sp|Q91WD5.1|NDUS2_MOUSE RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
2, mitochondrial; AltName: Full=Complex I-49kD;
Short=CI-49kD; AltName: Full=NADH-ubiquinone
oxidoreductase 49 kDa subunit; Flags: Precursor
gi|16359270|gb|AAH16097.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2 [Mus musculus]
gi|26347289|dbj|BAC37293.1| unnamed protein product [Mus musculus]
gi|74219567|dbj|BAE29554.1| unnamed protein product [Mus musculus]
gi|74224918|dbj|BAE38181.1| unnamed protein product [Mus musculus]
gi|148707169|gb|EDL39116.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, isoform CRA_b [Mus
musculus]
Length = 463
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 247/414 (59%), Positives = 308/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+ + LNFGPQHPAAHGVLRL+LEL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 77 VTNMTLNFGPQHPAAHGVLRLVLELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 136
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITR+LNH+M + +H+LDIGA
Sbjct: 137 DRLDYVSMMCNEQAYSIAVEKLLNIQPPPRAQWIRVLFGEITRILNHIMAVTTHALDIGA 196
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 197 MTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPL------------------ 238
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD I +F+ F IDE E +LT+NRIW+ R V IGVV+ E AL+ GF+G
Sbjct: 239 -------GLLDDIYEFSKNFSLRIDEVEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGV 291
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ + FD+PIG GD YDRYL R+EEMRQS +II+QC+
Sbjct: 292 MLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEEMRQSLRIIEQCLN-- 349
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 350 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 409
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGTQDIVFGEIDR
Sbjct: 410 YLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEIDR 463
>gi|311253960|ref|XP_001927701.2| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Sus scrofa]
Length = 473
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 246/414 (59%), Positives = 307/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+ + LNFGPQHPAAHGVLRL++EL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 87 VSNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 146
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITRLLNH+M + +H+LDIGA
Sbjct: 147 DRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRLLNHIMAVTTHALDIGA 206
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 207 MTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPL------------------ 248
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD I +F+ F IDE E +LT+NRIW+ R V IGVV+ E AL+ GF+G
Sbjct: 249 -------GLLDDIYEFSKNFSFRIDELEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGV 301
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ + FD+PIG GD YDRYL R+EEMRQS +II QC+
Sbjct: 302 MLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEEMRQSLRIISQCLN-- 359
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 360 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 419
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGTQDIVFGE+DR
Sbjct: 420 YLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 473
>gi|58584385|ref|YP_197958.1| NADH dehydrogenase subunit D [Wolbachia endosymbiont strain TRS of
Brugia malayi]
gi|75508014|sp|Q5GTF8.1|NUOD_WOLTR RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|58418701|gb|AAW70716.1| NADH:ubiquinone oxidoreductase chain D [Wolbachia endosymbiont
strain TRS of Brugia malayi]
Length = 390
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 243/415 (58%), Positives = 312/415 (75%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++K+ LNFGPQHPAAHGVLRL+LE++GE++ +ADPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 3 DLKTMMLNFGPQHPAAHGVLRLVLEMDGEIIERADPHIGLLHRGTEKLIEHKTYLQALPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVS M EHAY + +EKLL ++PIRA+Y+RV+F E+TR+LNHL+ I S +LD+G
Sbjct: 63 FDRLDYVSPMSQEHAYSLCVEKLLQCEVPIRAKYLRVLFCELTRILNHLLNISSQALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM LL+ F ERE +L+ YE SGAR HAAY RPGGV D+PE
Sbjct: 123 AMTPLLWLFEEREKILEFYERASGARFHAAYIRPGGVAADVPE----------------- 165
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L++ I F +FP+ ID+ + LLT+NRIWKQR VGI +S ++AL GF+G
Sbjct: 166 --------GLIEDIAKFIEQFPQYIDDVDELLTENRIWKQRTVGISEISIKQALDWGFSG 217
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLR +G+ WDLRK QPYEIY+ L+FDIP+G+NGD YDRYLVR+EE+RQS ++KQCI+
Sbjct: 218 PMLRAAGLAWDLRKSQPYEIYDQLDFDIPVGQNGDCYDRYLVRMEEIRQSVSLVKQCIE- 276
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ +GPV + + KI+ P R MK +ME LIHHFKL++EG++VP GE Y+ VE PKGEFG
Sbjct: 277 -KIPEGPVKTEDRKISPPPRTEMKRSMEALIHHFKLYSEGYHVPEGEAYAAVEAPKGEFG 335
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDG N+PYR +IR+PGFAHLQ+L M GHM++DV IIG+ DIVFGEIDR
Sbjct: 336 VYIVSDGTNRPYRCRIRAPGFAHLQALDFMAKGHMLADVAAIIGSLDIVFGEIDR 390
>gi|301786741|ref|XP_002928779.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial-like [Ailuropoda melanoleuca]
Length = 463
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 244/414 (58%), Positives = 308/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+ + LNFGPQHPAAHGVLRL++EL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 77 VTNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 136
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITRLLNH+M + +H+LDIGA
Sbjct: 137 DRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRLLNHIMAVTTHALDIGA 196
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 197 MTPFFWMFEEREKMFEFYERVSGARMHAAYVRPGGVHQDLPL------------------ 238
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD I +F+ F +DE E +LT+NRIW+ R V IGVV+ E AL+ GF+G
Sbjct: 239 -------GLLDDIYEFSKNFSLRVDELEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGV 291
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ + FD+P+G GD YDRYL R+EEMRQS +II+QC+
Sbjct: 292 MLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIEQCLN-- 349
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 350 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 409
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGTQDIVFGE+DR
Sbjct: 410 YLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
>gi|74226763|dbj|BAE27028.1| unnamed protein product [Mus musculus]
Length = 463
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 247/414 (59%), Positives = 308/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+ + LNFGPQHPAAHGVLRL+LEL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 77 VTNMALNFGPQHPAAHGVLRLVLELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 136
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITR+LNH+M + +H+LDIGA
Sbjct: 137 DRLDYVSMMCNEQAYSIAVEKLLNIQPPPRAQWIRVLFGEITRILNHIMSVTTHALDIGA 196
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 197 MTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPL------------------ 238
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD I +F+ F IDE E +LT+NRIW+ R V IGVV+ E AL+ GF+G
Sbjct: 239 -------GLLDDIYEFSKNFSLRIDEVEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGV 291
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ + FD+PIG GD YDRYL R+EEMRQS +II+QC+
Sbjct: 292 MLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEEMRQSLRIIEQCLN-- 349
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 350 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 409
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGTQDIVFGEIDR
Sbjct: 410 YLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEIDR 463
>gi|288958986|ref|YP_003449327.1| NADH dehydrogenase I subunit D [Azospirillum sp. B510]
gi|288911294|dbj|BAI72783.1| NADH dehydrogenase I chain D [Azospirillum sp. B510]
Length = 419
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 248/415 (59%), Positives = 306/415 (73%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK Y +NFGPQHPAAHGVLRL++EL GEVV + DPHIGLLHR TEKL E +TY+Q++PY
Sbjct: 32 QIKPYTMNFGPQHPAAHGVLRLVMELNGEVVERCDPHIGLLHRGTEKLIEYKTYVQAVPY 91
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVS MC EHAYV+ IE LL IK P+RAQYIRV+F EITR+LNH++ I + +LD+G
Sbjct: 92 FDRLDYVSPMCMEHAYVLGIENLLQIKAPLRAQYIRVLFSEITRILNHILSITTGALDVG 151
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HA Y+RPGGV D+P+
Sbjct: 152 ALTPALWGFEEREILMEFYERVSGARLHANYFRPGGVAWDIPD----------------- 194
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I FT RFPK +D+ E+LLT+NRI+KQR V IG+V+ E+AL FTG
Sbjct: 195 --------GLLDDIWAFTERFPKFMDDLESLLTENRIFKQRTVDIGIVTKEQALDWAFTG 246
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV WDLRK QPYE+Y+ + FD+P+G GD + RYLVR+EEM+QS +II+QC K
Sbjct: 247 PMLRGSGVAWDLRKSQPYEVYDRMEFDVPVGLTGDCWARYLVRMEEMKQSLRIIRQCCKE 306
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GP + K++ P R MK +ME LIHHFKLFTEGF+VP GE Y+ +E PKGEFG
Sbjct: 307 MPA--GPYKVQDRKVSPPPRGEMKRSMEALIHHFKLFTEGFHVPAGETYTAIEAPKGEFG 364
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG NKPYR KIR+PGFAHLQ L M GHM++D V I + DIVFGEIDR
Sbjct: 365 VYLVSDGTNKPYRCKIRAPGFAHLQGLDFMSKGHMLADAVANIASMDIVFGEIDR 419
>gi|74142353|dbj|BAE31936.1| unnamed protein product [Mus musculus]
gi|74198865|dbj|BAE30656.1| unnamed protein product [Mus musculus]
Length = 462
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 247/414 (59%), Positives = 308/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+ + LNFGPQHPAAHGVLRL+LEL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 76 VTNMTLNFGPQHPAAHGVLRLVLELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 135
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITR+LNH+M + +H+LDIGA
Sbjct: 136 DRLDYVSMMCNEQAYSIAVEKLLNIQPPPRAQWIRVLFGEITRILNHIMAVTTHALDIGA 195
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 196 MTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPL------------------ 237
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD I +F+ F IDE E +LT+NRIW+ R V IGVV+ E AL+ GF+G
Sbjct: 238 -------GLLDDIYEFSKNFSLRIDEVEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGV 290
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ + FD+PIG GD YDRYL R+EEMRQS +II+QC+
Sbjct: 291 MLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEEMRQSLRIIEQCLN-- 348
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 349 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 408
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGTQDIVFGEIDR
Sbjct: 409 YLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEIDR 462
>gi|443731498|gb|ELU16603.1| hypothetical protein CAPTEDRAFT_170088 [Capitella teleta]
Length = 463
Score = 513 bits (1321), Expect = e-142, Method: Compositional matrix adjust.
Identities = 242/415 (58%), Positives = 310/415 (74%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++ +NFGPQHPAAHGVLRL+L L+GE V +ADPHIGLLHRATEKL E +T+LQ+LPY
Sbjct: 76 DVQNITINFGPQHPAAHGVLRLVLTLDGETVVRADPHIGLLHRATEKLIENKTFLQALPY 135
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDY SMMCNE AY +A+EKLLNI++P RAQ+IRV+F EITRL+NH M IG H+LD+G
Sbjct: 136 FDRLDYCSMMCNEQAYSLAVEKLLNIEVPDRAQFIRVLFGEITRLMNHTMGIGCHALDVG 195
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM + F ERE L + YE VSG+RMHAAY RPGGV RDLP
Sbjct: 196 AMTPFFWLFEEREKLCEFYERVSGSRMHAAYVRPGGVDRDLPL----------------- 238
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L+D I ++ +F +DE + LLT+NRIW++R +GIG V+ E AL+ GF+G
Sbjct: 239 --------GLMDDIHEWITKFGTIVDEVDNLLTNNRIWRERTIGIGTVTSEDALNYGFSG 290
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+KWDLRK QPY+ Y+ + FD+PIG NGD+YDRYL+R+EEMRQS +II+QC+
Sbjct: 291 VMLRGSGIKWDLRKTQPYDAYDKVEFDVPIGVNGDTYDRYLIRMEEMRQSVRIIEQCLN- 349
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ G + ++ K+ P R+ MK++ME LIHHFKL++EG+ VP G Y+ +E PKGEFG
Sbjct: 350 -KMPPGEIKCDDAKVVPPKRVEMKNSMEALIHHFKLYSEGYNVPPGSTYTAIEAPKGEFG 408
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG+NKPYR KI++PGFAHL +L M GHM++DVV IIGT DIVFGE+DR
Sbjct: 409 VYLVSDGSNKPYRCKIKAPGFAHLAALHHMSKGHMLADVVAIIGTLDIVFGEVDR 463
>gi|115495721|ref|NP_001068605.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial precursor [Bos taurus]
gi|116242673|sp|P17694.2|NDUS2_BOVIN RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
2, mitochondrial; AltName: Full=Complex I-49kD;
Short=CI-49kD; AltName: Full=NADH-ubiquinone
oxidoreductase 49 kDa subunit; Flags: Precursor
gi|112362375|gb|AAI19925.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Bos taurus]
gi|296489840|tpg|DAA31953.1| TPA: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial precursor [Bos taurus]
Length = 463
Score = 513 bits (1321), Expect = e-142, Method: Compositional matrix adjust.
Identities = 244/414 (58%), Positives = 307/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+ + LNFGPQHPAAHGVLRL++EL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 77 VSNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 136
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITRLLNH+M + +H+LDIGA
Sbjct: 137 DRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRLLNHIMAVTTHALDIGA 196
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 197 MTPFFWMFEEREKMFEFYERVSGARMHAAYVRPGGVHQDLPL------------------ 238
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I +F+ F IDE E +LT+NRIW+ R V IG+V+ E AL+ GF+G
Sbjct: 239 -------GLMDDIYEFSKNFSLRIDELEEMLTNNRIWRNRTVDIGIVTAEDALNYGFSGV 291
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ + FD+PIG GD YDRYL R+EEMRQS +II QC+
Sbjct: 292 MLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEEMRQSIRIISQCLN-- 349
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 350 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 409
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGTQDIVFGE+DR
Sbjct: 410 YLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
>gi|281352149|gb|EFB27733.1| hypothetical protein PANDA_018833 [Ailuropoda melanoleuca]
Length = 432
Score = 513 bits (1321), Expect = e-142, Method: Compositional matrix adjust.
Identities = 244/414 (58%), Positives = 308/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+ + LNFGPQHPAAHGVLRL++EL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 46 VTNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 105
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITRLLNH+M + +H+LDIGA
Sbjct: 106 DRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRLLNHIMAVTTHALDIGA 165
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 166 MTPFFWMFEEREKMFEFYERVSGARMHAAYVRPGGVHQDLPL------------------ 207
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD I +F+ F +DE E +LT+NRIW+ R V IGVV+ E AL+ GF+G
Sbjct: 208 -------GLLDDIYEFSKNFSLRVDELEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGV 260
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ + FD+P+G GD YDRYL R+EEMRQS +II+QC+
Sbjct: 261 MLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIEQCLN-- 318
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 319 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 378
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGTQDIVFGE+DR
Sbjct: 379 YLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 432
>gi|386800356|ref|YP_006280821.1| NADH dehydrogenase subunit 7 (mitochondrion) [Cyanophora paradoxa]
gi|321268726|gb|ADW79175.1| NADH dehydrogenase subunit 7 (mitochondrion) [Cyanophora paradoxa]
Length = 399
Score = 513 bits (1321), Expect = e-142, Method: Compositional matrix adjust.
Identities = 250/414 (60%), Positives = 308/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+K++ LNFGPQHPAAHGVLRL+LEL GE+V+KADPHIGLLHR TEKL E + Y Q+LPY
Sbjct: 13 LKNFTLNFGPQHPAAHGVLRLVLELNGEIVKKADPHIGLLHRGTEKLIEYKNYNQALPYF 72
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMM EHAY +A+EKLL +P+RA++IRV+F EITR+LNHL+ + H++D+GA
Sbjct: 73 DRLDYVSMMAQEHAYSLAVEKLLKCSVPLRAKWIRVIFSEITRILNHLLAVTCHAMDVGA 132
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ LL+ F ERE L++ YE VSGARMHAAY RPGGV +DLP
Sbjct: 133 LTPLLWGFEEREKLMEFYERVSGARMHAAYIRPGGVSQDLP------------------- 173
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L + I +F +F I+E E LLT+NRIWKQRLV IGVV+ + A+ GF+G
Sbjct: 174 ------NGLTNDIYEFVIQFENKINELEELLTNNRIWKQRLVDIGVVTAKEAIDWGFSGV 227
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSGV WDLRK + YE Y+ L+F++P+G GD YDRYL+RIEEMRQS II+Q + L
Sbjct: 228 MLRGSGVAWDLRKNEAYETYDNLDFEVPVGIRGDCYDRYLIRIEEMRQSCYIIQQSLNKL 287
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
S GP+ ++NKI+ P+R MK +ME LIHHFKL+TEG+ VP GE YS VE PKGEFG+
Sbjct: 288 SS--GPIKVDDNKISPPSRTEMKQSMESLIHHFKLYTEGYTVPKGETYSFVEAPKGEFGV 345
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVS+G NKPYR KI++PGFAHLQ L M HM++DVVTIIGTQDIVFGEIDR
Sbjct: 346 YLVSNGTNKPYRCKIKAPGFAHLQGLDMMSKNHMLADVVTIIGTQDIVFGEIDR 399
>gi|426216997|ref|XP_004002740.1| PREDICTED: LOW QUALITY PROTEIN: NADH dehydrogenase [ubiquinone]
iron-sulfur protein 2, mitochondrial [Ovis aries]
Length = 463
Score = 513 bits (1321), Expect = e-142, Method: Compositional matrix adjust.
Identities = 245/414 (59%), Positives = 307/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+ + LNFGPQHPAAHGVLRL++EL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 77 VSNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 136
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITRLLNH+M + +H+LDIGA
Sbjct: 137 DRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRLLNHIMAVTTHALDIGA 196
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 197 MTPFFWMFEEREKMFEFYERVSGARMHAAYVRPGGVHQDLPL------------------ 238
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I +F+ F IDE E +LT+NRIW+ R V IGVV+ E AL+ GF+G
Sbjct: 239 -------GLMDDIYEFSKNFSLRIDELEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGV 291
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ + FD+PIG GD YDRYL R+EEMRQS +II QC+
Sbjct: 292 MLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEEMRQSIRIISQCLN-- 349
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 350 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 409
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGTQDIVFGE+DR
Sbjct: 410 YLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
>gi|157129189|ref|XP_001655316.1| NADH-ubiquinone oxidoreductase fe-s protein 2 (ndufs2) [Aedes
aegypti]
gi|108872313|gb|EAT36538.1| AAEL011381-PA [Aedes aegypti]
Length = 468
Score = 513 bits (1321), Expect = e-142, Method: Compositional matrix adjust.
Identities = 242/414 (58%), Positives = 312/414 (75%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+++ K+NFGPQHPAAHGVLRL+LEL+GE V +ADPHIGLLHR TEKL E +TY Q+LPY
Sbjct: 82 VRNVKINFGPQHPAAHGVLRLVLELDGETVMRADPHIGLLHRGTEKLIEYKTYTQALPYF 141
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE Y +A+EKLLNI IP+RA+YIRV+F EITR+LNH+M IG+H+LD+GA
Sbjct: 142 DRLDYVSMMCNEQCYSLAVEKLLNIDIPLRAKYIRVLFGEITRILNHIMAIGTHALDVGA 201
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ + F ERE +++ YE VSGARMHAAY RPGGV +DLP
Sbjct: 202 LTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSQDLPL------------------ 243
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD I +F ++F + +DE E +LT NRIW QR IG+V+ E AL+ GF+G
Sbjct: 244 -------GLLDDIYEFASKFAERLDEVEDVLTTNRIWVQRTQDIGIVTAEDALNYGFSGV 296
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG+KWDLRK QPY+ Y+L++FD+PIG GD YDRYL R+EEMRQS +II QC+ +
Sbjct: 297 MLRGSGIKWDLRKSQPYDAYHLVDFDVPIGTKGDCYDRYLCRVEEMRQSLRIIDQCLNQM 356
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + +++ K+T P+R MK++ME LIHHFKLFT+G+ VP G Y+ +E PKGEFG+
Sbjct: 357 PA--GDIKTDDAKLTPPSRSEMKTSMEALIHHFKLFTQGYQVPPGSTYTAIEAPKGEFGV 414
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL +L ++ HM++DVV IIGT D+VFGEIDR
Sbjct: 415 YLVSDGSSRPYRCKIKAPGFAHLAALDKVGKHHMLADVVAIIGTLDVVFGEIDR 468
>gi|374292609|ref|YP_005039644.1| NADH-quinone oxidoreductase, subunit D [Azospirillum lipoferum 4B]
gi|357424548|emb|CBS87427.1| NADH-quinone oxidoreductase, subunit D [Azospirillum lipoferum 4B]
Length = 419
Score = 513 bits (1321), Expect = e-142, Method: Compositional matrix adjust.
Identities = 249/415 (60%), Positives = 305/415 (73%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK Y +NFGPQHPAAHGVLRL++EL GEVV + DPHIGLLHR TEKL E +TY+Q++PY
Sbjct: 32 QIKPYTMNFGPQHPAAHGVLRLVMELNGEVVERCDPHIGLLHRGTEKLIEYKTYVQAVPY 91
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVS MC EHAYV+ IE LL IK P+RAQYIRV+F EITR+LNH++ I + +LD+G
Sbjct: 92 FDRLDYVSPMCMEHAYVLGIENLLQIKAPLRAQYIRVLFSEITRILNHILSITTGALDVG 151
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HA Y+RPGGV DLP+
Sbjct: 152 AITPALWGFEEREILMEFYERVSGARLHANYFRPGGVAWDLPD----------------- 194
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I FT R+PK +D+ E+LLT+NRI+KQR V IG+V+ E AL FTG
Sbjct: 195 --------GLLDDIWAFTERYPKFMDDLESLLTENRIFKQRTVDIGIVTKEEALDWAFTG 246
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV WDLRK QPYE+Y+ + FD+P+G GD + RYLVR+EEMRQS +II+QC K
Sbjct: 247 PMLRGSGVAWDLRKSQPYEVYDRMEFDVPVGVTGDCWARYLVRMEEMRQSLRIIRQCCKE 306
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GP + K++ P R MK +ME LIHHFKLFTEGF+VP GE Y+ +E PKGEFG
Sbjct: 307 MPA--GPYKIEDRKVSPPPRGEMKRSMEALIHHFKLFTEGFHVPAGETYTAIEAPKGEFG 364
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG NKPYR KIR+PGFAHLQ L M GHM++D V I + DIVFGEIDR
Sbjct: 365 VYLVSDGTNKPYRCKIRAPGFAHLQGLDFMSKGHMLADAVANIASMDIVFGEIDR 419
>gi|312383663|gb|EFR28661.1| hypothetical protein AND_03103 [Anopheles darlingi]
Length = 473
Score = 513 bits (1321), Expect = e-142, Method: Compositional matrix adjust.
Identities = 245/414 (59%), Positives = 309/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+++ LNFGPQHPAAHGVLRL+LEL+GE V +ADPHIGLLHR TEKL E +TY Q+LPY
Sbjct: 87 VRNLSLNFGPQHPAAHGVLRLVLELDGETVMRADPHIGLLHRGTEKLIEYKTYTQALPYF 146
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE Y +A+EKLLNI IP+RA+YIRV+F EITR+LNH+M +G+H+LD+GA
Sbjct: 147 DRLDYVSMMCNEQCYSLAVEKLLNIDIPLRAKYIRVLFGEITRILNHIMAVGTHALDVGA 206
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ + F ERE +++ YE VSGARMHAAY RPGGV +DLP
Sbjct: 207 LTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSQDLPL------------------ 248
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD I +F ++F + +DE E +LT NRIW QR V IG+VS E AL+ GF+G
Sbjct: 249 -------GLLDDIYEFASKFAERLDEVEDVLTTNRIWVQRTVDIGIVSAEDALNYGFSGV 301
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG+KWDLRK QPY+ Y+ + FD+PIG GD YDRYL R+EEMRQS +II QC+ +
Sbjct: 302 MLRGSGIKWDLRKAQPYDAYDRVEFDVPIGTKGDCYDRYLCRVEEMRQSLRIIDQCLNQM 361
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + +++ K+T P+R MK +ME LIHHFKLFT+G+ VP G Y+ VE PKGEFGI
Sbjct: 362 PA--GEIKTDDAKLTPPSRAEMKHSMEALIHHFKLFTQGYQVPPGATYTAVEAPKGEFGI 419
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG++KPYR KI++PGFAHL +L ++ HM++DVV IIGT D+VFGEIDR
Sbjct: 420 YLVSDGSSKPYRCKIKAPGFAHLAALDKVGRHHMLADVVAIIGTLDVVFGEIDR 473
>gi|328775171|gb|AEB39980.1| NADH dehydrogenase subunit 7 [Funaria hygrometrica]
Length = 393
Score = 513 bits (1320), Expect = e-142, Method: Compositional matrix adjust.
Identities = 246/418 (58%), Positives = 309/418 (73%), Gaps = 33/418 (7%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK++ LNFGPQHPAAHGVLRL+LE+ GEVV +A+PHIGLLHR TEKL E +TYL++LPY
Sbjct: 6 QIKNFTLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLRALPY 65
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM EHAY +A+EKL N ++P+RAQYIRV+F EITR+LNHL+ + +H++D+G
Sbjct: 66 FDRLDYVSMMAQEHAYSLAVEKLCNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMDVG 125
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+AF ERE LL+ YE VSGARMHA+Y RPGGV +D+P
Sbjct: 126 ALTPFLWAFEEREKLLEFYERVSGARMHASYIRPGGVAQDMP------------------ 167
Query: 459 ILNENRQGSLLDFIED---FTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMG 515
L ED FT +F IDE E +LT+NRIWKQRLV IG V+ ++AL G
Sbjct: 168 ----------LGLSEDIFLFTQQFASRIDEIEEMLTNNRIWKQRLVDIGTVTAQQALDWG 217
Query: 516 FTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQC 575
F+G ML+GSGV WDLRK PY++YN L+FD+P+G GD YDRY +RIEEMRQS +II QC
Sbjct: 218 FSGVMLKGSGVCWDLRKSAPYDVYNQLSFDVPVGTRGDCYDRYCIRIEEMRQSIRIIMQC 277
Query: 576 IKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
+ + S G + +++ K+ P+R MK +ME LIHHFKL+TEGF VP Y+ VE PKG
Sbjct: 278 LNQMPS--GMIKADDRKLCPPSRSQMKQSMESLIHHFKLYTEGFSVPASSTYTAVEAPKG 335
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFG++LVS+G N+PYR KIR+PGFAHLQ L M HM++DVVTIIGTQDIVFGE+DR
Sbjct: 336 EFGVFLVSNGTNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 393
>gi|452822922|gb|EME29937.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2 [Galdieria
sulphuraria]
Length = 490
Score = 513 bits (1320), Expect = e-142, Method: Compositional matrix adjust.
Identities = 242/416 (58%), Positives = 308/416 (74%), Gaps = 27/416 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
+E K++ LNFGPQHP+AHGVLRL+LEL+GE+V++ADPHIGLLHR TEKL E +T+LQ+LP
Sbjct: 102 VEFKNFSLNFGPQHPSAHGVLRLVLELDGELVKRADPHIGLLHRGTEKLIEYKTFLQALP 161
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y DRLDYVSMM E Y +A+EKLL I++P RA+YIR +F EITRLLNHL+ I +H++DI
Sbjct: 162 YFDRLDYVSMMAQEQCYSLAVEKLLKIEVPRRAKYIRTLFGEITRLLNHLLAITTHAMDI 221
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GAM L+AF ERE L++ YE SGAR+H+AY RPGGV D+P
Sbjct: 222 GAMSPFLWAFEEREKLMEFYERASGARLHSAYVRPGGVQYDIPL---------------- 265
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
L D I F +FP +DE E +LT NRIWKQR V IG+V+ + AL+ GF+
Sbjct: 266 ---------GLSDDIYRFCEQFPARVDEIEEMLTANRIWKQRTVDIGIVTAKDALNFGFS 316
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GPMLRGSG+ WDLRK QPY+ Y+ +NF IP+G +GDSYDRYL RIEEMRQS II QC+
Sbjct: 317 GPMLRGSGIAWDLRKSQPYDAYDEVNFTIPVGTHGDSYDRYLCRIEEMRQSVAIIVQCLN 376
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+ +G + ++ KI+ P+R NMK +ME LIHHFKL++EG+ VP GE Y VE PKGEF
Sbjct: 377 QM--PEGEIKVDDRKISPPSRANMKQSMESLIHHFKLYSEGYAVPAGETYRAVEAPKGEF 434
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YL+++G N+PYR +IR PGF HL +L+ M GHM++DVVT+IGTQDIVFGE+DR
Sbjct: 435 GVYLIANGTNRPYRCRIRPPGFYHLSALNHMCQGHMVADVVTMIGTQDIVFGEVDR 490
>gi|440893883|gb|ELR46499.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial, partial [Bos grunniens mutus]
Length = 471
Score = 513 bits (1320), Expect = e-142, Method: Compositional matrix adjust.
Identities = 244/414 (58%), Positives = 307/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+ + LNFGPQHPAAHGVLRL++EL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 85 VSNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 144
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITRLLNH+M + +H+LDIGA
Sbjct: 145 DRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRLLNHIMAVTTHALDIGA 204
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 205 MTPFFWMFEEREKMFEFYERVSGARMHAAYVRPGGVHQDLPL------------------ 246
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I +F+ F IDE E +LT+NRIW+ R V IG+V+ E AL+ GF+G
Sbjct: 247 -------GLMDDIYEFSKNFSLRIDELEEMLTNNRIWRNRTVDIGIVTAEDALNYGFSGV 299
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ + FD+PIG GD YDRYL R+EEMRQS +II QC+
Sbjct: 300 MLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEEMRQSIRIISQCLN-- 357
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 358 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 417
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGTQDIVFGE+DR
Sbjct: 418 YLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 471
>gi|833783|emb|CAA32523.1| NADH:ubiquinone oxidoreductase (428 AA) [Bos taurus]
Length = 428
Score = 513 bits (1320), Expect = e-142, Method: Compositional matrix adjust.
Identities = 244/414 (58%), Positives = 307/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+ + LNFGPQHPAAHGVLRL++EL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 42 VSNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 101
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITRLLNH+M + +H+LDIGA
Sbjct: 102 DRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDIGA 161
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 162 MTPFFWMFEEREKMFEFYERVSGARMHAAYVRPGGVHQDLPL------------------ 203
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I +F+ F IDE E +LT+NRIW+ R V IG+V+ E AL+ GF+G
Sbjct: 204 -------GLMDDIYEFSKNFSLRIDELEEMLTNNRIWRNRTVDIGIVTAEDALNYGFSGV 256
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ + FD+PIG GD YDRYL R+EEMRQS +II QC+
Sbjct: 257 MLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEEMRQSIRIISQCLN-- 314
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 315 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 374
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGTQDIVFGE+DR
Sbjct: 375 YLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 428
>gi|84508628|ref|YP_448675.1| NADH dehydrogenase subunit 7 [Desmarestia viridis]
gi|45925660|gb|AAS79061.1| NADH dehydrogenase subunit 7 (mitochondrion) [Desmarestia viridis]
Length = 398
Score = 513 bits (1320), Expect = e-142, Method: Compositional matrix adjust.
Identities = 244/415 (58%), Positives = 311/415 (74%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++ + +NFGPQHPAAHGVLRLILEL GEVV++ADPHIGLLHR TEKL E +TY Q+LPY
Sbjct: 11 KLQHFTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIEAKTYFQALPY 70
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMMC EH Y +A+E LL + IP RAQYIRV+F EITR+LNHL+ +G H++D+G
Sbjct: 71 FDRLDYVSMMCQEHTYALAVENLLQVSIPKRAQYIRVLFAEITRILNHLLAVGCHAMDVG 130
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM L+AF ERE L++ YE VSGARMHA+Y+RPGGV +D+ SI
Sbjct: 131 AMTPFLWAFEEREKLMEFYERVSGARMHASYFRPGGVSQDI---------SI-------- 173
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L+D I F +F + +DE E +LT+NRIW++RLV IGVV+ + A+ GF+G
Sbjct: 174 --------GLIDDIYSFAVQFGQRLDEMEEMLTENRIWQERLVDIGVVTAQEAIDWGFSG 225
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WDLRK +PYE+Y+ L F +GK GD YDRYLVR+EEMRQS +I QC+
Sbjct: 226 VMLRGSGVRWDLRKNEPYEVYSDLKFCEVVGKTGDCYDRYLVRVEEMRQSLSLIHQCLN- 284
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ +G V ++ KI+ P+R +K +ME LIHHFKL+TEG VP GE Y+ E PKGEFG
Sbjct: 285 -KMPQGSVKIDDAKISPPSRTEVKQSMESLIHHFKLYTEGVLVPAGETYTATEAPKGEFG 343
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++LVSDG+N+PYR KI++PGFAHLQ L+ M + HM++DVVTIIGTQDIVFGE+DR
Sbjct: 344 VFLVSDGSNRPYRCKIKAPGFAHLQGLNFMANSHMLADVVTIIGTQDIVFGEVDR 398
>gi|444522045|gb|ELV13286.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Tupaia chinensis]
Length = 510
Score = 513 bits (1320), Expect = e-142, Method: Compositional matrix adjust.
Identities = 245/414 (59%), Positives = 307/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+ + LNFGPQHPAAHGVLRL++EL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 124 VSNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 183
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITRLLNH+M + +H+LDIGA
Sbjct: 184 DRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRLLNHIMAVTTHALDIGA 243
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 244 MTPFFWMFEEREKMFEFYERVSGARMHAAYVRPGGVHQDLPL------------------ 285
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD I +F+ F IDE E +LT+NRIW+ R + IGVV+ E AL+ GF+G
Sbjct: 286 -------GLLDDIYEFSKNFSIRIDELEEMLTNNRIWRNRTIDIGVVTAEDALNYGFSGV 338
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ + FD+PIG GD YDRYL R+EEMRQS +II QC+
Sbjct: 339 MLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEEMRQSLRIIFQCLN-- 396
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 397 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 456
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGTQDIVFGE+DR
Sbjct: 457 YLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 510
>gi|432101257|gb|ELK29495.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial, partial [Myotis davidii]
Length = 436
Score = 513 bits (1320), Expect = e-142, Method: Compositional matrix adjust.
Identities = 245/414 (59%), Positives = 307/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+ + LNFGPQHPAAHGVLRL++EL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 50 VSNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 109
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITRLLNH+M + +H+LDIGA
Sbjct: 110 DRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDIGA 169
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 170 MTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPL------------------ 211
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I F+ F IDE E +LT+NRIW+ R V IGVV+ E AL+ GF+G
Sbjct: 212 -------GLMDDIYQFSKNFSLRIDEVEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGV 264
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ ++FD+PIG GD YDRYL R+EEMRQS +II QC+
Sbjct: 265 MLRGSGIQWDLRKTQPYDVYDQVDFDVPIGSRGDCYDRYLCRVEEMRQSLRIISQCLN-- 322
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 323 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 382
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGTQDIVFGE+DR
Sbjct: 383 YLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 436
>gi|410986790|ref|XP_003999692.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Felis catus]
Length = 447
Score = 513 bits (1320), Expect = e-142, Method: Compositional matrix adjust.
Identities = 245/414 (59%), Positives = 308/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+ + LNFGPQHPAAHGVLRL++EL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 61 VTNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 120
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITRLLNH+M + +H+LDIGA
Sbjct: 121 DRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRLLNHIMAVTTHALDIGA 180
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 181 MTPFFWMFEEREKMFEFYERVSGARMHAAYVRPGGVHQDLPL------------------ 222
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I +F+ F IDE E +LT+NRIW+ R V IGVV+ E AL+ GF+G
Sbjct: 223 -------GLMDDIYEFSKNFSLRIDELEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGV 275
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ ++FD+PIG GD YDRYL R+EEMRQS +II QC+
Sbjct: 276 MLRGSGIQWDLRKTQPYDVYDQVDFDVPIGSRGDCYDRYLCRVEEMRQSLRIILQCLN-- 333
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 334 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 393
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGTQDIVFGE+DR
Sbjct: 394 YLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 447
>gi|347801036|gb|AEP20740.1| NADH dehydrogenase subunit 7 (mitochondrion) [endosymbiont of
Kryptoperidinium foliaceum]
Length = 397
Score = 512 bits (1319), Expect = e-142, Method: Compositional matrix adjust.
Identities = 251/417 (60%), Positives = 311/417 (74%), Gaps = 27/417 (6%)
Query: 277 VIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSL 336
V EIK++ +NFGPQHPAAHGVLRL+LEL GEVV +A+PHIGLLHR TEKL E + YLQ+L
Sbjct: 8 VKEIKNFTVNFGPQHPAAHGVLRLVLELTGEVVERAEPHIGLLHRGTEKLIEYKNYLQAL 67
Query: 337 PYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLD 396
PY DRLDYVSMM EH Y +AIEKLLN IP RAQYIRV+F EITR+LNHL+ +G H++D
Sbjct: 68 PYFDRLDYVSMMSQEHTYCLAIEKLLNCSIPRRAQYIRVLFAEITRILNHLLAVGCHAMD 127
Query: 397 IGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKA 456
+GAM +L+ F ERE L++ YE VSGARMHAAYYRPGGV+ DLP+
Sbjct: 128 VGAMTPMLWGFEEREKLMEFYERVSGARMHAAYYRPGGVHTDLPK--------------- 172
Query: 457 TKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGF 516
LL I F +F I E E +LT+NRIWKQRLV IGVV+ ++A + GF
Sbjct: 173 ----------GLLTDIYLFKEQFKLRILEIEEMLTENRIWKQRLVDIGVVTLDQAQNWGF 222
Query: 517 TGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCI 576
+G MLRGSG++WDLRK QPYE+Y+ L+FDI G NGD YDRYL+RI EM+QS +II+QC+
Sbjct: 223 SGVMLRGSGLEWDLRKSQPYEVYSELDFDILAGANGDCYDRYLIRIFEMKQSVRIIEQCL 282
Query: 577 KWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
+ GP+ +++NKIT P+R ++K +ME LIHHFK +T G +P E Y+ E PKGE
Sbjct: 283 DNIPF--GPIKTDDNKITPPSRFDIKQSMESLIHHFKFYTSGINIPANETYTGTEAPKGE 340
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YL+S+ +NKPYR KI++PGFAHLQ L M GHMI+DVVTIIGTQDIVFGE+DR
Sbjct: 341 FGVYLISNNSNKPYRCKIKAPGFAHLQGLDMMSRGHMIADVVTIIGTQDIVFGEVDR 397
>gi|344287004|ref|XP_003415246.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial-like [Loxodonta africana]
Length = 463
Score = 512 bits (1319), Expect = e-142, Method: Compositional matrix adjust.
Identities = 244/414 (58%), Positives = 307/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+ + LNFGPQHPAAHGVLRL++EL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 77 VSNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 136
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITR+LNH+M + +H+LDIGA
Sbjct: 137 DRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRILNHIMAVTTHALDIGA 196
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 197 MTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPL------------------ 238
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I +F+ F IDE E +LT+NRIWK R V IGV++ E AL+ GF+G
Sbjct: 239 -------GLMDDIYEFSKNFSLRIDEVEEMLTNNRIWKNRTVDIGVITSEHALNYGFSGV 291
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ + FD+PIG GD YDRYL R+EEMRQS +II QC+
Sbjct: 292 MLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEEMRQSLRIILQCLN-- 349
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 350 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 409
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGTQDIVFGE+DR
Sbjct: 410 YLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
>gi|348561674|ref|XP_003466637.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial-like [Cavia porcellus]
Length = 463
Score = 512 bits (1319), Expect = e-142, Method: Compositional matrix adjust.
Identities = 247/414 (59%), Positives = 305/414 (73%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+ + LNFGPQHPAAHGVLRL++EL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 77 VSNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 136
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITRLLNH+M + +H+LDIGA
Sbjct: 137 DRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRLLNHIMAVTTHALDIGA 196
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 197 MTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPL------------------ 238
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD I F+ F IDE E +LT+NRIW+ R V IGVV E AL+ GF+G
Sbjct: 239 -------GLLDDIYQFSKNFSLRIDEVEEMLTNNRIWRNRTVDIGVVKAEDALNYGFSGV 291
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ + FD+PIG GD YDRYL R+EEMRQS +II+QC+
Sbjct: 292 MLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEEMRQSLRIIEQCLN-- 349
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 350 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 409
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL L M GHM++DVV IIGTQDIVFGEIDR
Sbjct: 410 YLVSDGSSRPYRCKIKAPGFAHLAGLDMMSQGHMLADVVAIIGTQDIVFGEIDR 463
>gi|354489525|ref|XP_003506912.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Cricetulus griseus]
gi|344252460|gb|EGW08564.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Cricetulus griseus]
Length = 463
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 244/414 (58%), Positives = 307/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+ + LNFGPQHPAAHGVLRL++EL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 77 VSNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 136
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITR+LNH+M + +H+LDIGA
Sbjct: 137 DRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFAEITRILNHIMAVTTHALDIGA 196
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 197 MTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPL------------------ 238
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD I +FT F IDE E +LT+NRIW+ R V IGV++ E AL+ GF+G
Sbjct: 239 -------GLLDDIYEFTKNFSLRIDEVEEMLTNNRIWRNRTVDIGVITAEDALNYGFSGV 291
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ + FD+P+G GD YDRYL R+EEMRQ+ +II QC+
Sbjct: 292 MLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQALRIILQCLN-- 349
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 350 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 409
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGTQDIVFGEIDR
Sbjct: 410 YLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEIDR 463
>gi|326434726|gb|EGD80296.1| NADH dehydrogenase iron-sulfur protein 2 [Salpingoeca sp. ATCC
50818]
Length = 457
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 245/427 (57%), Positives = 307/427 (71%), Gaps = 27/427 (6%)
Query: 267 VGHPFRKDFPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKL 326
+ HP R P E+ + +NFGPQHPAAHGVLRL+LEL+GE+VR ADPH+GLLHR TEKL
Sbjct: 58 IQHPTRDYVPEQEVSNLTVNFGPQHPAAHGVLRLVLELDGEIVRHADPHVGLLHRGTEKL 117
Query: 327 AEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNH 386
E + YLQ+LPY DRLDYVSMMCNE AY +A+EKLLNI++P RA+YIRV+F E+TR+LNH
Sbjct: 118 IEYKNYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIEVPERAKYIRVLFGELTRILNH 177
Query: 387 LMWIGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQY 446
+M + +H+LD+GA+ L+ F ERE +++ YE VSGARMHAAY RPGGV D+P
Sbjct: 178 IMGVTTHALDVGALTPFLWLFEEREKMMEFYERVSGARMHAAYVRPGGVSLDMPI----- 232
Query: 447 KSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVV 506
L++ I + FP IDE E LLT NRIWKQRLV +GVV
Sbjct: 233 --------------------GLMEDIYQWAQAFPARIDEVEELLTGNRIWKQRLVDVGVV 272
Query: 507 SPERALSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMR 566
+ + AL GF+G MLRGSG+ WDLRK QPY+ Y+ + FD+P+G GDSYDRYL+R EEMR
Sbjct: 273 TAKDALDWGFSGVMLRGSGIPWDLRKSQPYDAYDKVEFDVPVGSRGDSYDRYLIRCEEMR 332
Query: 567 QSNKIIKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEI 626
QS +II QC+ + G V ++ K+ P R MK +ME LIHHFKL+TEG+ VP G
Sbjct: 333 QSVRIINQCLNDM--PDGEVRVDDAKVAPPRRAEMKESMEALIHHFKLYTEGYQVPPGST 390
Query: 627 YSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDI 686
Y+ +E PKGEFG+YLVSDG +KPYR KI++PGFAHL L M GHM++DVV +IGT DI
Sbjct: 391 YTAIEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAGLDMMAKGHMLADVVALIGTLDI 450
Query: 687 VFGEIDR 693
VFGE+DR
Sbjct: 451 VFGEVDR 457
>gi|38638286|ref|NP_943678.1| NADH dehydrogenase subunit 7 [Chara vulgaris]
gi|385153414|ref|YP_006073014.1| nad7 gene product (mitochondrion) [Nitella hyalina]
gi|32966600|gb|AAP92183.1| NADH dehydrogenase subunit 7 [Chara vulgaris]
gi|335354145|gb|AEH42832.1| NADH dehydrogenase subunit 7 (mitochondrion) [Nitella hyalina]
Length = 393
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 246/418 (58%), Positives = 306/418 (73%), Gaps = 33/418 (7%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK+ NFGPQHPAAHGVLRL+LE+ GEVV +A+PHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 6 QIKNLTFNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQALPY 65
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM EHAY +A+EKL N ++P+RAQYIRV+F EITR+LNHL+ + +H++D+G
Sbjct: 66 FDRLDYVSMMAQEHAYSLAVEKLCNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMDVG 125
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+AF ERE LL+ YE VSGARMHA+Y RPGGV +DLP
Sbjct: 126 ALTPFLWAFEEREKLLEFYERVSGARMHASYIRPGGVAQDLP------------------ 167
Query: 459 ILNENRQGSLLDFIED---FTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMG 515
L ED F+ +F IDE E +LT+NRIWKQRLV IG V+ ++A+ G
Sbjct: 168 ----------LGLSEDLFLFSQQFASRIDEVEEMLTNNRIWKQRLVDIGTVTAQQAMDWG 217
Query: 516 FTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQC 575
F+G MLRGSGV WDLRK PY++Y+ + FD+P+G GD YDRY VRIEEMRQS +II QC
Sbjct: 218 FSGVMLRGSGVSWDLRKAAPYDVYDKVEFDVPVGTRGDCYDRYCVRIEEMRQSLRIIVQC 277
Query: 576 IKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
+ + S G + +++ K+ P+R MK +ME LIHHFKL+TEG VP Y+CVE PKG
Sbjct: 278 LNQMPS--GMIKADDRKLCPPSRSQMKQSMESLIHHFKLYTEGVSVPASSTYTCVEAPKG 335
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFG+YLVS+G N+PYR KIR+PGFAHLQ L M HM++DVVTIIGTQDIVFGE+DR
Sbjct: 336 EFGVYLVSNGTNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 393
>gi|291397570|ref|XP_002715203.1| PREDICTED: NADH dehydrogenase (ubiquinone) Fe-S protein 2
[Oryctolagus cuniculus]
Length = 463
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 243/414 (58%), Positives = 306/414 (73%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+ + LNFGPQHPAAHGVLRL++EL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 77 VSNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 136
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITRLLNH+M + +H+LDIGA
Sbjct: 137 DRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRLLNHIMAVTTHALDIGA 196
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 197 MTPFFWMFEEREKMFEFYERVSGARMHAAYVRPGGVHQDLPL------------------ 238
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I +F+ F IDE E +LT+NRIW+ R + IGV++ E AL+ GF+G
Sbjct: 239 -------GLMDDIYEFSKNFSLRIDEVEEMLTNNRIWRNRTIDIGVITAEDALNYGFSGV 291
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY+ Y+ + FD+PIG GD YDRYL R+EEMRQS +II QC+
Sbjct: 292 MLRGSGIQWDLRKTQPYDAYDQVEFDVPIGSRGDCYDRYLCRVEEMRQSLRIISQCLN-- 349
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 350 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 409
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGTQDIVFGE+DR
Sbjct: 410 YLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
>gi|316996031|dbj|BAD83554.2| NADH dehydrogenase subunit 7 (mitochondrion) [Nicotiana tabacum]
Length = 394
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 246/415 (59%), Positives = 311/415 (74%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK++ LNFGPQHPAAHGVLRL+LE+ GEVV +A+PHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 7 QIKNFTLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQALPY 66
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM EHAY +A+E+LLN ++P+RAQYIRV+F EITR+LNHL+ + +H++D+G
Sbjct: 67 FDRLDYVSMMAQEHAYSLAVERLLNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMDVG 126
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+AF ERE LL+ YE VSGARMHA++ RPGGV +DLP
Sbjct: 127 ALTPFLWAFEEREKLLEFYERVSGARMHASFIRPGGVAQDLP------------------ 168
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
G +D I+ FT +F IDE E +LT NRIWKQRLV IG V+ ++A GF+G
Sbjct: 169 ------LGLCID-IDSFTQQFASRIDELEEMLTGNRIWKQRLVDIGTVTAQQAKDWGFSG 221
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WDLRK PY++Y+ L+FDIP+G GD YDRY +RIEEMRQS +II QC+
Sbjct: 222 VMLRGSGVCWDLRKAAPYDVYDQLDFDIPVGTRGDCYDRYCIRIEEMRQSVRIIVQCLNQ 281
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ S G + +++ K+ P+R MK +ME LIHHF+L+TEGF VP Y+ VE PKGEFG
Sbjct: 282 MPS--GMIKADDRKLCPPSRSRMKLSMESLIHHFELYTEGFSVPASSTYTAVEAPKGEFG 339
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++LVS+G+N+PYR KIR+PGFAHLQ L M HM++DVVTIIGTQDIVFGE+DR
Sbjct: 340 VFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 394
>gi|194769679|ref|XP_001966929.1| GF19015 [Drosophila ananassae]
gi|190618028|gb|EDV33552.1| GF19015 [Drosophila ananassae]
Length = 470
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 238/414 (57%), Positives = 311/414 (75%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+++ LNFGPQHPAAHGVLRL+LEL+GE V +ADPHIGLLHR TEKL E +TY Q+LPY
Sbjct: 84 VRNLTLNFGPQHPAAHGVLRLVLELDGETVMRADPHIGLLHRGTEKLIEYKTYTQALPYF 143
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE Y +A+EKLLNI++P+RA+YIR +F EITR+LNH+M +G+H+LD+GA
Sbjct: 144 DRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRTLFAEITRILNHIMAVGTHALDVGA 203
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ + F ERE +++ YE VSGARMHAAY RPGGV D+P
Sbjct: 204 LTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDIPL------------------ 245
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD I +F+++F + +DE E +LT NRIW QR IG+V+ E AL+ GF+G
Sbjct: 246 -------GLLDDIYEFSSKFSERLDEVEDVLTTNRIWVQRTEDIGIVTAEEALNFGFSGV 298
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG+KWDLRK+QPY+ YNL++FD+PIG GD YDRYL R+EEMRQS +II QC+ +
Sbjct: 299 MLRGSGIKWDLRKQQPYDAYNLVDFDVPIGTKGDCYDRYLCRVEEMRQSLRIIDQCLNQM 358
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
S G + +++ K+ P+R MK++ME LIHHFKLFT+G+ VP G Y+ +E PKGEFG+
Sbjct: 359 PS--GEIKTDDAKVAPPSRFEMKTSMEALIHHFKLFTQGYQVPPGATYTAIEAPKGEFGV 416
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
Y+VSDG+++PYR KI++PGFAHL +L ++ HM++DVV IIGT D+VFGEIDR
Sbjct: 417 YIVSDGSSRPYRCKIKAPGFAHLAALEKIGKQHMLADVVAIIGTLDVVFGEIDR 470
>gi|268164110|ref|YP_003288887.1| NADH dehydrogenase subunit 7 [Saccharina coriacea]
gi|262318420|dbj|BAI48739.1| NADH dehydrogenase subunit 7 [Saccharina coriacea]
Length = 398
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 244/411 (59%), Positives = 308/411 (74%), Gaps = 27/411 (6%)
Query: 283 YKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRL 342
+ +NFGPQHPAAHGVLRLILEL GEVV++ADPHIGLLHR TEKL E +TY Q+LPY DRL
Sbjct: 15 FTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIEAKTYFQALPYFDRL 74
Query: 343 DYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGV 402
DYVSMMC EH Y +A+E LL I +P RAQYIRV+F EITR+LNHL+ +G H++D+GAM
Sbjct: 75 DYVSMMCQEHTYALAVENLLQISVPKRAQYIRVLFAEITRILNHLLAVGCHAMDVGAMTP 134
Query: 403 LLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNE 462
L+AF ERE L++ YE VSGARMHA+Y+RPGGV +DL
Sbjct: 135 FLWAFEEREKLMEFYERVSGARMHASYFRPGGVSQDLTI--------------------- 173
Query: 463 NRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLR 522
L+D I F +F + +DE E +LTDNRIW++RLV IGVV+ + A+ GF+G MLR
Sbjct: 174 ----GLIDDIFSFAAQFGQRLDEIEEMLTDNRIWQERLVDIGVVNAQEAIDWGFSGVMLR 229
Query: 523 GSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSN 582
GSG++WDLRK +PY+ Y+ L+F +GK GD YDRYLVR+EEMRQS II QC+ +
Sbjct: 230 GSGIRWDLRKNEPYDAYSELSFQGVVGKTGDCYDRYLVRVEEMRQSLSIIYQCLN--KMP 287
Query: 583 KGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLV 642
+G V +++KIT P+R ++K +ME LIHHFKL+TEG VP GE Y E PKGEFG+YLV
Sbjct: 288 EGSVKVDDSKITPPSRADVKQSMEALIHHFKLYTEGVTVPSGETYIATEAPKGEFGVYLV 347
Query: 643 SDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
SDG+N+PYR KI++PGF+HLQ+L+ M + HM++DVVTIIGTQDIVFGE+DR
Sbjct: 348 SDGSNRPYRCKIKAPGFSHLQALNFMANSHMLADVVTIIGTQDIVFGEVDR 398
>gi|395825183|ref|XP_003785820.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Otolemur garnettii]
Length = 463
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 243/414 (58%), Positives = 307/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+ + LNFGPQHPAAHGVLRL++EL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 77 VSNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 136
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITRLLNH+M + +H+LDIGA
Sbjct: 137 DRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDIGA 196
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 197 MTPFFWLFEEREKMFEFYERVSGARMHAAYVRPGGVHQDLPL------------------ 238
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I +F+ F +DE E +LT+NRIW+ R V IGVV+ E AL+ GF+G
Sbjct: 239 -------GLMDDIYEFSKNFSLRLDELEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGV 291
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ + FD+P+G GD YDRYL R+EEMRQS +II QC+
Sbjct: 292 MLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIVQCLN-- 349
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 350 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 409
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGTQDIVFGE+DR
Sbjct: 410 YLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
>gi|355745838|gb|EHH50463.1| hypothetical protein EGM_01296 [Macaca fascicularis]
Length = 463
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 241/414 (58%), Positives = 309/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+K+ LNFGPQHPAAHGVLRL++EL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 77 VKNMTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 136
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITRLLNH+M + +H+LD+GA
Sbjct: 137 DRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAMTTHALDLGA 196
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 197 MTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPL------------------ 238
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I +F+ F +DE E +LT+NRIW+ R + IGVV+ E AL+ GF+G
Sbjct: 239 -------GLMDDIYEFSKNFSLRLDELEEMLTNNRIWRNRTIDIGVVTAEEALNYGFSGV 291
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ ++FD+P+G GD YDRYL R+EEMRQS +II QC+
Sbjct: 292 MLRGSGIQWDLRKTQPYDVYDQVDFDVPVGSRGDCYDRYLCRVEEMRQSLRIIVQCLN-- 349
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 350 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 409
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGTQD+VFGE+DR
Sbjct: 410 YLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDVVFGEVDR 463
>gi|320163618|gb|EFW40517.1| NADH dehydrogenase iron-sulfur protein 2 [Capsaspora owczarzaki
ATCC 30864]
Length = 472
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 249/418 (59%), Positives = 304/418 (72%), Gaps = 27/418 (6%)
Query: 276 PVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQS 335
P + +Y +NFGPQHPAAHGVLRL+LEL+GEVV +ADPHIGLLHR TEKL E +TY Q+
Sbjct: 82 PERHVSNYTMNFGPQHPAAHGVLRLVLELDGEVVHRADPHIGLLHRGTEKLIEYKTYTQA 141
Query: 336 LPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSL 395
LPY DRLDYVSMM NE AY +A+EKLLNI+ P RAQYIRV+F EITRLLNH+M + +H++
Sbjct: 142 LPYFDRLDYVSMMANEQAYSLAVEKLLNIQAPPRAQYIRVLFGEITRLLNHIMAVTTHAM 201
Query: 396 DIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNK 455
D+GA+ L+ F ERE +++ YE SGAR+HAAY RPGGV DLP
Sbjct: 202 DVGALTPFLWMFEEREKMMEFYERASGARLHAAYVRPGGVALDLPL-------------- 247
Query: 456 ATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMG 515
L++ I +F F IDE E +LT+NRIWKQRLV IG+V+ +AL G
Sbjct: 248 -----------GLMEDIYNFIKPFSSRIDEMEDMLTENRIWKQRLVDIGIVTARQALDWG 296
Query: 516 FTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQC 575
F+G MLRGSG+ WDLRK QPY+ Y FD+P+GK GDSYDRYL R+EEMRQS +II Q
Sbjct: 297 FSGVMLRGSGIAWDLRKVQPYDGYEKFKFDVPVGKRGDSYDRYLCRVEEMRQSIRIIMQA 356
Query: 576 IKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
+ + + G V ++NKIT P R MK +ME LIHHFKLFTEG+ VP G Y+ VE PKG
Sbjct: 357 LNDMPT--GEVRIDDNKITPPRRAEMKESMEALIHHFKLFTEGYVVPAGATYTAVEAPKG 414
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFG+YLVSDG+++PYR KIR+PGFAHL L M GHMI+DVV +IGTQDIVFGE+DR
Sbjct: 415 EFGVYLVSDGSSRPYRCKIRAPGFAHLAGLDFMSRGHMIADVVALIGTQDIVFGEVDR 472
>gi|21450025|ref|NP_659287.1| NADH dehydrogenase subunit 7 [Laminaria digitata]
gi|21425350|emb|CAC87983.1| NADH dehydrogenase subunit 7 [Laminaria digitata]
Length = 398
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 243/411 (59%), Positives = 311/411 (75%), Gaps = 27/411 (6%)
Query: 283 YKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRL 342
+ +NFGPQHPAAHGVLRLILEL GEVV++ADPHIGLLHR TEKL E +TY Q+LPY DRL
Sbjct: 15 FTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIEAKTYFQALPYFDRL 74
Query: 343 DYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGV 402
DYVSMMC EH Y +A+E LL I +P RAQYIR++F EITR+LNHL+ +G H++D+GAM
Sbjct: 75 DYVSMMCQEHTYALAVENLLQISVPKRAQYIRILFAEITRILNHLLAVGCHAMDVGAMTP 134
Query: 403 LLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNE 462
L+AF ERE L++ YE VSGARMHA+Y+RPGGV +D+ SI
Sbjct: 135 FLWAFEEREKLMEFYERVSGARMHASYFRPGGVSQDI---------SI------------ 173
Query: 463 NRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLR 522
L++ I F +F + +DE E +LTDNRIW++RLV IGVVS + A+ GF+G MLR
Sbjct: 174 ----GLINDIFSFAAQFGQRLDEMEEMLTDNRIWQERLVDIGVVSAQEAIDWGFSGVMLR 229
Query: 523 GSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSN 582
G+GV+WDLRK +PY+ Y+ L+F +GK GD YDRYLVR+EEMRQS II QC+ +
Sbjct: 230 GTGVRWDLRKNEPYDAYSELSFQGVVGKTGDCYDRYLVRVEEMRQSLSIIYQCLN--KMP 287
Query: 583 KGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLV 642
+G + ++ KI+ P+R ++K +ME LIHHFKL+TEG VPLGE Y+ E PKGEFG+YLV
Sbjct: 288 EGSIKIDDAKISPPSRADVKQSMEALIHHFKLYTEGVTVPLGETYTATEAPKGEFGVYLV 347
Query: 643 SDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
SDG+N+PYR KI++PGF+HLQ+L+ M + HM++DVVTIIGTQDIVFGE+DR
Sbjct: 348 SDGSNRPYRCKIKAPGFSHLQALNFMANSHMLADVVTIIGTQDIVFGEVDR 398
>gi|84508548|ref|YP_448713.1| NADH dehydrogenase subunit 7 [Dictyota dichotoma]
gi|45925716|gb|AAS79097.1| NADH dehydrogenase subunit 7 (mitochondrion) [Dictyota dichotoma]
Length = 398
Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust.
Identities = 246/411 (59%), Positives = 307/411 (74%), Gaps = 27/411 (6%)
Query: 283 YKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRL 342
+ +NFGPQHPAAHGVLRLILEL GEVV++ADPHIGLLHR TEKL E +TYLQ+LPY DRL
Sbjct: 15 FTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIESKTYLQALPYFDRL 74
Query: 343 DYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGV 402
DYVSMMC EH Y +A+E LLN+ IP RAQYIRV+F EITR+LNHL+ +G H++D+GAM
Sbjct: 75 DYVSMMCQEHTYALAVENLLNVSIPRRAQYIRVIFAEITRILNHLLAVGCHAMDVGAMTP 134
Query: 403 LLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNE 462
L+AF ERE L++ YE VSGARMHA+Y+RPGGV +DL + ILN+
Sbjct: 135 FLWAFEEREKLMEFYERVSGARMHASYFRPGGVSQDL----------------SLGILND 178
Query: 463 NRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLR 522
I F N+F +DE E +LT N IWK RLV IGVV+ A+ GF+G MLR
Sbjct: 179 ---------IYSFCNQFGHRLDEIEEMLTSNPIWKLRLVDIGVVTAREAVDWGFSGVMLR 229
Query: 523 GSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSN 582
GSG+ WDLRK QPYE+Y + FDIP+G NGD +DRY +RI+EMRQS I+ QC+ +
Sbjct: 230 GSGLIWDLRKNQPYEVYPEIKFDIPVGVNGDCFDRYTIRIQEMRQSLNILYQCLN--KMP 287
Query: 583 KGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLV 642
+G V ++ KI+ P+R+ +K NME LIHHFKL+TEG VP+GE Y E PKGEFG+YL+
Sbjct: 288 QGSVKVDDYKISPPSRVELKQNMEALIHHFKLYTEGVLVPVGETYIATEAPKGEFGVYLI 347
Query: 643 SDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
S+G N+PYR KI++PGF+HLQ+L+ M S HM++DVVTIIGTQDIVFGE+DR
Sbjct: 348 SNGTNRPYRCKIKAPGFSHLQALNLMSSSHMLADVVTIIGTQDIVFGEVDR 398
>gi|190571038|ref|YP_001975396.1| NADH dehydrogenase subunit D [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213019559|ref|ZP_03335365.1| NADH dehydrogenase I, D subunit [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|218534466|sp|B3CLH1.1|NUOD_WOLPP RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|190357310|emb|CAQ54739.1| NADH dehydrogenase I, D subunit [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|212994981|gb|EEB55623.1| NADH dehydrogenase I, D subunit [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 390
Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust.
Identities = 242/415 (58%), Positives = 310/415 (74%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++K+ LNFGPQHPAAHGVLRL+LE++GEV+ +ADPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 3 DLKTMMLNFGPQHPAAHGVLRLVLEMDGEVIERADPHIGLLHRGTEKLIEHKTYLQALPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVS M EHAY + +EKLL +IPIRA+Y+RV+F E+TR+LNHL+ I S +LD+G
Sbjct: 63 FDRLDYVSPMSQEHAYSLCVEKLLQCEIPIRAKYLRVLFCELTRILNHLLNISSQALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM LL+ F ERE +L+ YE SGAR HAAY RPGG+ D+PE
Sbjct: 123 AMTPLLWLFEEREKILEFYERASGARFHAAYIRPGGLAADIPE----------------- 165
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L++ I F +FPK ID+ + LLT+NRIWKQR VGI +S ++AL GF+G
Sbjct: 166 --------GLIEDIAKFIEQFPKYIDDVDELLTENRIWKQRTVGISEISIKQALDWGFSG 217
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLR +G+ WDLRK QPYEIY+ L+FDIPIG+NGD YDRYLVR+ E+RQS ++KQCI+
Sbjct: 218 PMLRAAGLAWDLRKSQPYEIYDQLDFDIPIGQNGDCYDRYLVRMAEIRQSVSLVKQCIE- 276
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ +GP+ + + KI+ P R MK +ME +IHHFKL++EG++VP GE Y VE PKGEFG
Sbjct: 277 -KMPEGPIKTEDRKISPPPRAEMKESMEAMIHHFKLYSEGYHVPEGEAYVAVEAPKGEFG 335
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDG N+PYR +IR+PGFAHLQ+L M GHM++D+ IIG+ DIVFGEIDR
Sbjct: 336 VYIVSDGTNRPYRCRIRAPGFAHLQALDFMAKGHMLADIAAIIGSLDIVFGEIDR 390
>gi|355558662|gb|EHH15442.1| hypothetical protein EGK_01532 [Macaca mulatta]
Length = 463
Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust.
Identities = 241/414 (58%), Positives = 309/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+K+ LNFGPQHPAAHGVLRL++EL GE+V+K DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 77 VKNMTLNFGPQHPAAHGVLRLVMELSGEMVQKCDPHIGLLHRGTEKLIEYKTYLQALPYF 136
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITRLLNH+M + +H+ D+GA
Sbjct: 137 DRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHAPDLGA 196
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M L + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 197 MTPLFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPL------------------ 238
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I +F+ F +DE E +LT+NRIW+ R + IGVV+ E AL+ GF+G
Sbjct: 239 -------GLMDDIYEFSKNFSLRLDELEEMLTNNRIWRNRTIDIGVVTAEEALNYGFSGV 291
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ ++FD+P+G GD YDRYL R+EEMRQS +II QC+
Sbjct: 292 MLRGSGIQWDLRKTQPYDVYDQVDFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLN-- 349
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 350 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 409
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGTQDIVFGE+DR
Sbjct: 410 YLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
>gi|307209286|gb|EFN86377.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Harpegnathos saltator]
Length = 469
Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust.
Identities = 247/422 (58%), Positives = 311/422 (73%), Gaps = 27/422 (6%)
Query: 272 RKDFPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRT 331
+ FP I++ K+NFGPQHPAAHGVLRLILEL+GE+V ADPHIGLLHR TEKL E +T
Sbjct: 75 KHKFPEQTIQNIKINFGPQHPAAHGVLRLILELDGEIVLNADPHIGLLHRGTEKLIEYKT 134
Query: 332 YLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIG 391
Y+Q+LPY DRLDYVSMMCNE + +AIEKLLNI +P+R +YIRV+F EITR+LNH+M IG
Sbjct: 135 YMQALPYFDRLDYVSMMCNEQCFSLAIEKLLNIDVPLRGKYIRVLFAEITRILNHIMGIG 194
Query: 392 SHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSII 451
+H+LDIGAM + F ERE L++ YE VSGARMHAAY RPGGV D+P
Sbjct: 195 THALDIGAMTPFFWLFEEREKLMEFYERVSGARMHAAYVRPGGVSLDMPL---------- 244
Query: 452 RNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERA 511
L+D I D+ ++ + +DE E +LT+NRIWKQR IGVVS E A
Sbjct: 245 ---------------GLMDDIYDWATKYTERLDEVEDMLTENRIWKQRTTNIGVVSAEDA 289
Query: 512 LSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKI 571
L+ GF+G M+RGSG+KWDLRK PY+ Y+L++FD+P+G NGD YDRYL R+EEMRQS +I
Sbjct: 290 LNFGFSGVMVRGSGIKWDLRKTAPYDAYDLVDFDVPVGINGDCYDRYLCRMEEMRQSLRI 349
Query: 572 IKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVE 631
I QC+ + + G V ++ KI P R MK++ME LIHHFKL+++GF VP G Y+ +E
Sbjct: 350 IHQCLNQMPA--GEVRCDDAKIVPPRREEMKTSMEALIHHFKLYSQGFQVPPGATYTAIE 407
Query: 632 HPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEI 691
PKGEFG+YLVSDG++KPYR KI++PGFAHL +L M + H ++DVV IIGT DIVFGEI
Sbjct: 408 APKGEFGVYLVSDGSSKPYRCKIKAPGFAHLAALQYMGTKHFLADVVAIIGTLDIVFGEI 467
Query: 692 DR 693
DR
Sbjct: 468 DR 469
>gi|61097780|emb|CAI64462.1| NADH-Ubiquinone oxidoreductase subunit 7 [Nicotiana sylvestris]
Length = 394
Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust.
Identities = 246/415 (59%), Positives = 311/415 (74%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK++ LNFGPQHPAAHGVLRL+LE+ GEVV +A+PHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 7 QIKNFTLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQALPY 66
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM EHAY +A+E+LLN ++P+RAQYIRV+F EITR+LNHL+ + +H++D+G
Sbjct: 67 FDRLDYVSMMAQEHAYSLAVERLLNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMDVG 126
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+AF ERE LL+ YE VSGARMHA++ RPGGV +DLP
Sbjct: 127 ALTPFLWAFEEREKLLEFYERVSGARMHASFIRPGGVAQDLP------------------ 168
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
G +D I+ FT +F IDE E +LT NRIWKQRLV IG V+ ++A GF+G
Sbjct: 169 ------LGLCID-IDSFTQQFASRIDELEEMLTGNRIWKQRLVDIGTVTAQQAKDWGFSG 221
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WDLRK PY++Y+ L+FDIP+G GD YDRY +RIEEMRQS +II QC+
Sbjct: 222 VMLRGSGVCWDLRKAAPYDVYDQLDFDIPVGTRGDCYDRYCIRIEEMRQSVRIIVQCLNQ 281
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ S G + +++ K+ P+R MK +ME LIHHF+L+TEGF VP Y+ VE PKGEFG
Sbjct: 282 MPS--GMIKADDRKLCPPSRSRMKLSMESLIHHFELYTEGFSVPALSTYTAVEAPKGEFG 339
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++LVS+G+N+PYR KIR+PGFAHLQ L M HM++DVVTIIGTQDIVFGE+DR
Sbjct: 340 VFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 394
>gi|42520418|ref|NP_966333.1| NADH dehydrogenase subunit D [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|225630184|ref|YP_002726975.1| NADH dehydrogenase I, D subunit [Wolbachia sp. wRi]
gi|81652591|sp|Q73HJ8.1|NUOD_WOLPM RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|42410157|gb|AAS14267.1| NADH dehydrogenase I, D subunit [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|225592165|gb|ACN95184.1| NADH dehydrogenase I, D subunit [Wolbachia sp. wRi]
Length = 390
Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust.
Identities = 241/415 (58%), Positives = 311/415 (74%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++K+ LNFGPQHPAAHGVLRL+LE++GEV+ +ADPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 3 DLKTMMLNFGPQHPAAHGVLRLVLEMDGEVIERADPHIGLLHRGTEKLIEHKTYLQALPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVS M EHAY + +EKLL ++PIRA+Y+RV+F E+TR+LNHL+ + S +LD+G
Sbjct: 63 FDRLDYVSPMSQEHAYSLCVEKLLQCEVPIRAKYLRVLFCELTRILNHLLNVSSQALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM LL+ F ERE +L+ YE SGAR HAAY RPGG+ D+PE
Sbjct: 123 AMTPLLWLFEEREKILEFYERASGARFHAAYIRPGGIAADVPE----------------- 165
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L++ I F +FPK ID+ + LLT+NRIWKQR VGI +S ++AL GF+G
Sbjct: 166 --------DLIEDIAKFIEQFPKYIDDVDELLTENRIWKQRTVGISEISIKQALDWGFSG 217
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLR +G+ WDLRK QPYEIY+ L+FDIPIG+NGD YDRYLVR+ E+RQS ++KQCI+
Sbjct: 218 PMLRAAGLAWDLRKSQPYEIYDQLDFDIPIGQNGDCYDRYLVRMAEIRQSISLVKQCIE- 276
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ +G + + + KI+ P+R MK +ME LIHHFKL++EG++VP GE Y+ VE PKGEFG
Sbjct: 277 -KMPEGQIKTEDRKISPPSRAEMKKSMEALIHHFKLYSEGYHVPEGEAYAVVEAPKGEFG 335
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDG N+PYR +IR+PGFAHLQ+L M GHM++DV IIG+ DIVFGEIDR
Sbjct: 336 VYIVSDGTNRPYRCRIRAPGFAHLQALDFMAKGHMLADVAAIIGSLDIVFGEIDR 390
>gi|90086245|dbj|BAE91675.1| unnamed protein product [Macaca fascicularis]
Length = 395
Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust.
Identities = 242/414 (58%), Positives = 309/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+K+ LNFGPQHPAAHGVLRL++EL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 9 VKNMTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 68
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITRLLNH+M + +H+LD+GA
Sbjct: 69 DRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGA 128
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M L + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 129 MTPLFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPL------------------ 170
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I +F+ F +DE E +LT+NRIW+ R + IGVV+ E AL+ GF+G
Sbjct: 171 -------GLMDDIYEFSKNFSLRLDELEEMLTNNRIWRNRTIDIGVVTAEEALNYGFSGV 223
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ ++FD+P+G GD YDRYL R+EEMRQS +II QC+
Sbjct: 224 MLRGSGIQWDLRKTQPYDVYDQVDFDVPVGSRGDCYDRYLCRVEEMRQSLRIIVQCLN-- 281
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 282 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 341
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFA L L +M GHM++DVV IIGTQDIVFGE+DR
Sbjct: 342 YLVSDGSSRPYRCKIKAPGFAPLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 395
>gi|126310813|ref|XP_001371966.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial-like [Monodelphis domestica]
Length = 463
Score = 510 bits (1314), Expect = e-141, Method: Compositional matrix adjust.
Identities = 243/415 (58%), Positives = 306/415 (73%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++ + LNFGPQHPAAHGVLRL++EL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 76 KVANVTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPY 135
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMMCNE Y +A+EKLLNI+ PIRAQ+IRV+F EITRLLNH+M + +H+LDIG
Sbjct: 136 FDRLDYVSMMCNEQCYSLAVEKLLNIQPPIRAQWIRVLFGEITRLLNHIMALTTHALDIG 195
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM + F ERE + + YE VSGARMHAAY RPGGV++D+P
Sbjct: 196 AMTPFFWMFEEREKMFEFYERVSGARMHAAYVRPGGVHQDMPL----------------- 238
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L+D I +F F IDE E +LT+NRIW+ R + IGVV+ E AL+ GF+G
Sbjct: 239 --------GLMDDIYEFAKNFSIRIDELEEMLTNNRIWRNRTIDIGVVTAEEALNYGFSG 290
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG++WDLRK QPY+ Y+ + FD+PIG GD YDRYL R+EEMRQS +II QC+
Sbjct: 291 VMLRGSGIQWDLRKTQPYDAYDQVEFDVPIGSRGDCYDRYLCRVEEMRQSLRIILQCLN- 349
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG
Sbjct: 350 -KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFG 408
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGTQDIVFGE+DR
Sbjct: 409 VYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
>gi|195064427|ref|XP_001996567.1| GH23924 [Drosophila grimshawi]
gi|193892113|gb|EDV90979.1| GH23924 [Drosophila grimshawi]
Length = 469
Score = 510 bits (1313), Expect = e-141, Method: Compositional matrix adjust.
Identities = 239/414 (57%), Positives = 310/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+++ LNFGPQHPAAHGVLRL+LEL+GE V +ADPHIGLLHR TEKL E +TY Q+LPY
Sbjct: 83 VRNLTLNFGPQHPAAHGVLRLVLELDGETVMRADPHIGLLHRGTEKLIEYKTYTQALPYF 142
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE Y +A+EKLLNI++P+RA+YIR +F EITR+LNH+M IG+H+LD+GA
Sbjct: 143 DRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRTLFGEITRILNHIMAIGTHALDVGA 202
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ + F ERE +++ YE VSGARMHAAY RPGGV D+P
Sbjct: 203 LTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPL------------------ 244
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I +F ++F + +DE E +L+ NRIW QR IG+VS E AL+ GF+G
Sbjct: 245 -------GLMDDIYEFASKFAERLDEVEDVLSTNRIWVQRTEDIGIVSAEEALNYGFSGV 297
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG+KWDLRK+QPY+ Y+L++FD+PIG GD YDRYL RIEEMRQS +II QC+ +
Sbjct: 298 MLRGSGIKWDLRKQQPYDAYDLVDFDVPIGTKGDCYDRYLCRIEEMRQSLRIIDQCLNQM 357
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + +++ K+T P R MK++ME LIHHFKLFT+G+ VP G Y+ +E PKGEFG+
Sbjct: 358 PA--GEIKTDDAKVTPPTRSEMKTSMEALIHHFKLFTQGYQVPPGATYTAIEAPKGEFGV 415
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL +L ++ HM++DVV IIGT D+VFGEIDR
Sbjct: 416 YLVSDGSSRPYRCKIKAPGFAHLAALEKIGKQHMLADVVAIIGTLDVVFGEIDR 469
>gi|322799190|gb|EFZ20620.1| hypothetical protein SINV_09347 [Solenopsis invicta]
Length = 470
Score = 509 bits (1312), Expect = e-141, Method: Compositional matrix adjust.
Identities = 249/422 (59%), Positives = 311/422 (73%), Gaps = 29/422 (6%)
Query: 274 DFPVIE--IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRT 331
D P+ E I++ KLNFGPQHPAAHGVLRLILEL+GE+V ADPHIGLLHR TEKL E +T
Sbjct: 76 DSPLAEQTIQNVKLNFGPQHPAAHGVLRLILELDGEIVLSADPHIGLLHRGTEKLIEYKT 135
Query: 332 YLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIG 391
Y+Q+LPY DRLDYVSMMCNE + +AIEKLLNI +P+RA+YIRV+F EITR+LNH+M +G
Sbjct: 136 YMQALPYFDRLDYVSMMCNEQCFSLAIEKLLNIDVPLRAKYIRVLFAEITRILNHIMGVG 195
Query: 392 SHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSII 451
+H+LDIGA+ + F ERE +++ YE VSGARMHAAY RPGGV D+P
Sbjct: 196 THALDIGALTPFFWLFEEREKMMEFYERVSGARMHAAYVRPGGVSLDMPL---------- 245
Query: 452 RNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERA 511
L+D I D+ +++ + +DE E LLT+NRIWKQR + IG VS E A
Sbjct: 246 ---------------GLMDDIYDWASKYSERLDEVEDLLTENRIWKQRTIDIGCVSAEDA 290
Query: 512 LSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKI 571
L+ GF+G MLRGSG+KWDLRK PY+ Y+L++FDIP+G NGD YDRYL R+EEMRQS +I
Sbjct: 291 LNWGFSGVMLRGSGIKWDLRKVAPYDAYHLVDFDIPVGTNGDCYDRYLCRVEEMRQSLRI 350
Query: 572 IKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVE 631
I QC+ + + G V ++ KI P R MKS+ME LIHHFKLFT+GF VP G Y+ +E
Sbjct: 351 IHQCLNQMPA--GEVRCDDAKIVPPRREEMKSSMEALIHHFKLFTQGFQVPPGATYTAIE 408
Query: 632 HPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEI 691
PKGEFG+YLVSDG++KPYR KI++PGFAHL L H ++D+V IIGT D+VFGEI
Sbjct: 409 APKGEFGVYLVSDGSSKPYRCKIKAPGFAHLAGLQRFGPKHFLADIVAIIGTLDVVFGEI 468
Query: 692 DR 693
DR
Sbjct: 469 DR 470
>gi|1363358|pir||S57332 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 7 - wood
tobacco mitochondrion
Length = 394
Score = 509 bits (1312), Expect = e-141, Method: Compositional matrix adjust.
Identities = 244/415 (58%), Positives = 310/415 (74%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK++ LNFGPQHPAAHGVLRL+LE+ GEVV +A+PHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 7 QIKNFTLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQALPY 66
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM EHAY +A+E+LLN ++P+RAQYIRV+F EITR+LNHL+ + +H++D+G
Sbjct: 67 FDRLDYVSMMAQEHAYSLAVERLLNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMDVG 126
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+AF ERE LL+ YE VSGARMHA++ RPGGV +DLP
Sbjct: 127 ALTPFLWAFEEREKLLEFYERVSGARMHASFIRPGGVAQDLP------------------ 168
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
G +D I+ FT +F IDE E +LT NRIWKQRLV IG V+ ++A GF+G
Sbjct: 169 ------LGLCID-IDSFTQQFASRIDELEEMLTGNRIWKQRLVDIGTVTAQQAKDWGFSG 221
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WDLRK PY++Y+ L+FDIP+G GD YDRY +RIEEMRQS +II QC+
Sbjct: 222 VMLRGSGVCWDLRKAAPYDVYDQLDFDIPVGTRGDCYDRYCIRIEEMRQSVRIIVQCLNQ 281
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ S G + +++ K+ P+R MK++ME LIHHF+L+TEGF VP Y+ VE PKGEFG
Sbjct: 282 MPS--GMIKADDRKLCPPSRSRMKTSMESLIHHFELYTEGFSVPASSTYTAVEAPKGEFG 339
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++LVS+G+N+PYR KIR+P FAHLQ L M HM++DVVT IGTQDIVFGE+DR
Sbjct: 340 VFLVSNGSNRPYRCKIRAPCFAHLQGLDFMSKHHMLADVVTTIGTQDIVFGEVDR 394
>gi|24638644|ref|NP_651926.1| CG1970, isoform A [Drosophila melanogaster]
gi|442614419|ref|NP_001259064.1| CG1970, isoform B [Drosophila melanogaster]
gi|22759353|gb|AAF59336.2| CG1970, isoform A [Drosophila melanogaster]
gi|189182170|gb|ACD81861.1| LD47962p [Drosophila melanogaster]
gi|440218151|gb|AGB96554.1| CG1970, isoform B [Drosophila melanogaster]
Length = 468
Score = 509 bits (1312), Expect = e-141, Method: Compositional matrix adjust.
Identities = 237/414 (57%), Positives = 309/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+++ LNFGPQHPAAHGVLRL+LEL+GE V +ADPHIGLLHR TEKL E +TY Q+LPY
Sbjct: 82 VRNLTLNFGPQHPAAHGVLRLVLELDGETVMRADPHIGLLHRGTEKLIEYKTYTQALPYF 141
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE Y +A+EKLLNI +P+RA+YIR +F EITR+LNH+M +G+H+LD+GA
Sbjct: 142 DRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRILNHIMAVGTHALDVGA 201
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ + F ERE +++ YE VSGARMHAAY RPGGV D+P
Sbjct: 202 LTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPL------------------ 243
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I +F ++F + +DE E +LT NRIW QR IG+V+ E AL+ GF+G
Sbjct: 244 -------GLMDDIYEFASKFAERLDEVEDVLTTNRIWVQRTEDIGIVTAEEALNYGFSGV 296
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG+KWDLRK+QPY+ YNL+NFD+PIG GD YDRYL R+EEMRQS +II QC+ +
Sbjct: 297 MLRGSGIKWDLRKQQPYDAYNLVNFDVPIGTKGDCYDRYLCRVEEMRQSLRIIDQCLNQM 356
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + +++ K+ P+R MK++ME LIHHFKLFT+G+ VP G Y+ +E PKGEFG+
Sbjct: 357 PA--GEIKTDDAKVAPPSRSEMKTSMEALIHHFKLFTQGYQVPPGATYTAIEAPKGEFGV 414
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YL+SDG+++PYR KI++PGFAHL +L ++ HM++DVV IIGT D+VFGEIDR
Sbjct: 415 YLISDGSSRPYRCKIKAPGFAHLAALEKIGKQHMLADVVAIIGTLDVVFGEIDR 468
>gi|351710722|gb|EHB13641.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Heterocephalus glaber]
Length = 463
Score = 509 bits (1312), Expect = e-141, Method: Compositional matrix adjust.
Identities = 243/414 (58%), Positives = 306/414 (73%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+ + LNFGPQHPAAHGVLRL++EL GE+V+K DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 77 VSNLTLNFGPQHPAAHGVLRLVMELSGEMVQKCDPHIGLLHRGTEKLIEYKTYLQALPYF 136
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITRLLNH+M + +H+LD+GA
Sbjct: 137 DRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRLLNHIMAVTTHALDVGA 196
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M + F ERE L + YE VSGARMHAAY RPGGV++DLP
Sbjct: 197 MTPFFWMFEEREKLFEFYERVSGARMHAAYIRPGGVHQDLPL------------------ 238
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I +F+ F IDE E +LT+NRIW+ R V IGVV E AL+ GF+G
Sbjct: 239 -------GLMDDIYEFSKNFSLRIDEVEEMLTNNRIWQNRTVDIGVVKAEDALNYGFSGV 291
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ + FD+P+G GD YDRYL R+EEMRQS +II+QC+
Sbjct: 292 MLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIEQCLN-- 349
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 350 KMPPGEIKVDDAKVSPPKRSEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 409
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL L M GHM++DVV IIGTQDIVFGE+DR
Sbjct: 410 YLVSDGSSRPYRCKIKAPGFAHLAGLDMMSKGHMLADVVAIIGTQDIVFGEVDR 463
>gi|347800998|gb|AEP20703.1| NADH dehydrogenase subunit 7 (mitochondrion) [endosymbiont of
Durinskia baltica]
Length = 398
Score = 509 bits (1312), Expect = e-141, Method: Compositional matrix adjust.
Identities = 252/418 (60%), Positives = 310/418 (74%), Gaps = 28/418 (6%)
Query: 277 VIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSL 336
V EIK++ +NFGPQHPAAHGVLRL+LEL GEVV +A+PHIGLLHR TEKL E + Y Q+L
Sbjct: 8 VKEIKNFTVNFGPQHPAAHGVLRLVLELTGEVVERAEPHIGLLHRGTEKLIEYKNYFQAL 67
Query: 337 PYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLD 396
PY DRLDYVSMM EH Y +AIEKLLN IP RAQYIRV+F EITR+LNHL+ +G H++D
Sbjct: 68 PYFDRLDYVSMMAQEHTYCLAIEKLLNCSIPRRAQYIRVLFAEITRILNHLLAVGCHAMD 127
Query: 397 IGAMG-VLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNK 455
+GAM +L+ F ERE L++ YE VSGARMHAAY+RPGGV+ DLP+
Sbjct: 128 VGAMTPMLMGVFEEREKLMEFYERVSGARMHAAYFRPGGVHTDLPK-------------- 173
Query: 456 ATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMG 515
LL I F +F + E E +LT+NRIWKQRLV IGVVS E+A + G
Sbjct: 174 -----------GLLTDIYLFKEQFKLRLLEIEEMLTENRIWKQRLVDIGVVSLEQAQNWG 222
Query: 516 FTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQC 575
F+G MLRGSG++WDLRK QPYE+Y+ LNFDI G NGD YDRYL+RI EM+QS II+QC
Sbjct: 223 FSGVMLRGSGIEWDLRKSQPYEVYSELNFDILAGANGDCYDRYLIRIFEMKQSILIIEQC 282
Query: 576 IKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
+ + GP+ +++NKIT P+R ++K +ME LIHHFK +T G +P E Y+ E PKG
Sbjct: 283 LDNI--PLGPIKTDDNKITPPSRFDIKQSMESLIHHFKFYTSGINIPANETYTGTEAPKG 340
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFG+YL+S+ +NKPYR KI++PGFAHLQ L M SGHMI+DVVTIIGTQDIVFGE+DR
Sbjct: 341 EFGVYLISNNSNKPYRCKIKAPGFAHLQGLDMMSSGHMIADVVTIIGTQDIVFGEVDR 398
>gi|452964821|gb|EME69854.1| NADH dehydrogenase subunit D [Magnetospirillum sp. SO-1]
Length = 392
Score = 509 bits (1311), Expect = e-141, Method: Compositional matrix adjust.
Identities = 246/415 (59%), Positives = 303/415 (73%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+SY +NFGPQHPAAHGVLRLILE+ GEVV +ADPH+GLLHR TEKL E +TYLQ+ PY
Sbjct: 5 QIQSYTINFGPQHPAAHGVLRLILEMSGEVVDRADPHVGLLHRGTEKLIEHKTYLQATPY 64
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV M EHA+V+A EKLL I IPIRA++IR ++DEI R+LNHL+ + + D+G
Sbjct: 65 FDRLDYVGTMNQEHAFVLATEKLLGIDIPIRAKFIRTLYDEIGRILNHLLNVTAFIFDVG 124
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
M LLY F ERE L++ YE V GAR+HA YYRPGGV DLP
Sbjct: 125 GMTPLLYGFEEREKLMEFYERVCGARLHANYYRPGGVAADLP------------------ 166
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LL+ I + FPK +D+ ETL TDNRI+KQR+V IGVV+ ++AL GFTG
Sbjct: 167 -------AGLLEDIAAWCETFPKVLDDIETLATDNRIFKQRVVDIGVVTADQALDWGFTG 219
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
P LR SG+ WDLRK QPY++Y+ ++FDIP+GKNGD YDRYLVR+ EMR+S KI+KQCI
Sbjct: 220 PNLRASGIAWDLRKAQPYDVYDQMDFDIPVGKNGDGYDRYLVRVLEMRESVKIMKQCIA- 278
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ GPV +NKIT P R MK++ME LIHHFKLFTEGF VP GE+Y+ +E PKGEF
Sbjct: 279 -KMPNGPVKVEDNKITPPRRSEMKTSMESLIHHFKLFTEGFRVPAGEVYAAIEAPKGEFA 337
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YL++DG KPYR KIR PG+ HLQ+L M GHM++DVV+ IG+ DIVFGEIDR
Sbjct: 338 VYLIADGTGKPYRCKIRPPGYVHLQALDMMSKGHMLADVVSNIGSIDIVFGEIDR 392
>gi|91084535|ref|XP_972884.1| PREDICTED: similar to CG1970 CG1970-PA [Tribolium castaneum]
gi|270009249|gb|EFA05697.1| hypothetical protein TcasGA2_TC015217 [Tribolium castaneum]
Length = 466
Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust.
Identities = 240/414 (57%), Positives = 310/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+K+ LNFGPQHPAAHGVLRL++EL+GE+VR+ADPHIGLLHR TEKL E +TY Q+LPY
Sbjct: 80 VKNLTLNFGPQHPAAHGVLRLVIELDGEMVRRADPHIGLLHRGTEKLIEYKTYTQALPYF 139
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE Y +A+EKLLNI +P+RA+YIR +F EITR+LNH+M +G+H+LD+GA
Sbjct: 140 DRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRILNHIMAVGTHALDVGA 199
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ + F ERE +++ YE VSGARMHAAY RPGGV D+P
Sbjct: 200 LTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPL------------------ 241
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I +F ++F + +DE E +LT NRIW QR IGVVS E AL++GF+G
Sbjct: 242 -------GLMDDIYEFASKFGERLDEVEDVLTTNRIWVQRTQDIGVVSAEDALNLGFSGV 294
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG+KWDLRK QPY+ Y+L++FD+PIG GD YDRYL R+EEMRQS +II QC+ +
Sbjct: 295 MLRGSGIKWDLRKVQPYDAYDLVDFDVPIGVKGDCYDRYLCRVEEMRQSLRIIDQCLNNM 354
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
G + +++ K+T P+R MK++ME LIHHFKLFT+G+ VP G Y+ +E PKGEFG+
Sbjct: 355 --PPGEIKTDDAKLTPPSRAEMKTSMEALIHHFKLFTQGYQVPPGATYTAIEAPKGEFGV 412
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG +KPYR KI++PGFAHL +L ++ HM++D+V IIGT D+VFGEIDR
Sbjct: 413 YLVSDGGSKPYRCKIKAPGFAHLAALEKVGKNHMLADIVAIIGTLDVVFGEIDR 466
>gi|114327963|ref|YP_745120.1| NADH dehydrogenase subunit D [Granulibacter bethesdensis CGDNIH1]
gi|122327075|sp|Q0BSK5.1|NUOD_GRABC RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|114316137|gb|ABI62197.1| NADH-quinone oxidoreductase chain D [Granulibacter bethesdensis
CGDNIH1]
Length = 400
Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust.
Identities = 244/422 (57%), Positives = 311/422 (73%), Gaps = 27/422 (6%)
Query: 272 RKDFPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRT 331
+K V+EI S+ +NFGPQHPAAHGVLRL+LEL+GEVV +ADPHIGLLHR TEKL E ++
Sbjct: 6 QKQGRVVEIDSHAINFGPQHPAAHGVLRLVLELDGEVVERADPHIGLLHRGTEKLIEYKS 65
Query: 332 YLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIG 391
YLQ+LPY DRLDYVS MC EHA+ +A EKLL I P RAQ+IR MF EITR+LNHL+ +
Sbjct: 66 YLQALPYFDRLDYVSPMCEEHAFALATEKLLGITAPERAQWIRTMFAEITRILNHLLNLT 125
Query: 392 SHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSII 451
+++LD GAM +L+ ERE LL+ +EAVSGAR HA Y+RPGGV +DLP
Sbjct: 126 TYALDGGAMTPVLWGHEEREKLLEFHEAVSGARFHANYFRPGGVAKDLP----------- 174
Query: 452 RNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERA 511
L D I D+T +FP ID+ LL+DNRIWKQR+V IG ++PE+A
Sbjct: 175 --------------AGLTDRIADWTEKFPAFIDDMAGLLSDNRIWKQRVVDIGRMTPEQA 220
Query: 512 LSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKI 571
L+ GF+GP +R SG+ WDLRK QPY+ Y ++F++P+G+NGD YDRYLVR+EEMRQS +I
Sbjct: 221 LAWGFSGPCIRASGIPWDLRKSQPYDKYADVDFEVPVGRNGDCYDRYLVRVEEMRQSVRI 280
Query: 572 IKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVE 631
+KQC+ +R GP+ ++KIT P R MK +ME LIHHFKL+TEG++VP G Y+ VE
Sbjct: 281 VKQCLGKIRP--GPIKVQDHKITPPPRAEMKRSMEALIHHFKLYTEGYHVPEGATYTAVE 338
Query: 632 HPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEI 691
PKGEFG+YLVSDG+N+PYR KIR GFAHLQ++ M HM++D V IIG+ D+VFGE+
Sbjct: 339 SPKGEFGVYLVSDGSNRPYRCKIRPTGFAHLQAIDVMAHRHMLADAVVIIGSLDLVFGEV 398
Query: 692 DR 693
DR
Sbjct: 399 DR 400
>gi|45361573|ref|NP_989363.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Xenopus (Silurana)
tropicalis]
gi|39850016|gb|AAH64276.1| hypothetical protein MGC76312 [Xenopus (Silurana) tropicalis]
gi|89273935|emb|CAJ81740.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Xenopus (Silurana)
tropicalis]
Length = 459
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 245/430 (56%), Positives = 311/430 (72%), Gaps = 29/430 (6%)
Query: 266 FVGHPFRKDFPVIE--IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRAT 323
+V P+ P +E + + +NFGPQHPAAHGVLRL++EL GE V++ DPHIGLLHR T
Sbjct: 57 WVPAPWNDKDPPVEKTVSNLTINFGPQHPAAHGVLRLVMELSGESVKRCDPHIGLLHRGT 116
Query: 324 EKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRL 383
EKL E +TYLQ+LPY DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITR+
Sbjct: 117 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRI 176
Query: 384 LNHLMWIGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIM 443
LNH+M + H+LDIGAM + F ERE + + YE VSGARMHAAY RPGGV++D+P
Sbjct: 177 LNHIMAVTCHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYVRPGGVHQDMPL-- 234
Query: 444 PQYKSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGI 503
L+D I +F F +DE E +LT+NRIWK R V I
Sbjct: 235 -----------------------GLMDDIYEFIKNFSIRVDEVEEMLTNNRIWKNRTVDI 271
Query: 504 GVVSPERALSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIE 563
GVVS E AL+ GF+G MLRGSG++WDLRK QPY++Y+ + FD+PIG GD YDRYL R+E
Sbjct: 272 GVVSAEDALNYGFSGVMLRGSGIQWDLRKSQPYDVYDQVEFDVPIGSRGDCYDRYLCRVE 331
Query: 564 EMRQSNKIIKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPL 623
EMRQS +II QC+ + +G + ++ K++ P R MK +ME LIHHFKL+TEG+ VP
Sbjct: 332 EMRQSMRIILQCLN--KMPEGEIKVDDAKVSPPKRSEMKRSMESLIHHFKLYTEGYQVPP 389
Query: 624 GEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGT 683
G Y+ +E PKGEFG+YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGT
Sbjct: 390 GATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSQGHMLADVVAIIGT 449
Query: 684 QDIVFGEIDR 693
QDIVFGE+DR
Sbjct: 450 QDIVFGEVDR 459
>gi|15150763|ref|NP_150429.1| NADH dehydrogenase subunit 7 [Pylaiella littoralis]
gi|3122570|sp|Q37720.1|NDUS2_PYLLI RecName: Full=NADH-ubiquinone oxidoreductase 49 kDa subunit;
AltName: Full=NADH dehydrogenase subunit 7
gi|728615|emb|CAA88557.1| NADH dehydrogenase (ubiquinone), subunit 7 [Pylaiella littoralis]
gi|15147769|emb|CAC50870.1| NADH dehydrogenase subunit 7 [Pylaiella littoralis]
Length = 398
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 241/411 (58%), Positives = 305/411 (74%), Gaps = 27/411 (6%)
Query: 283 YKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRL 342
+ +NFGPQHPAAHGVLRLILEL GEVV++ADPHIGLLHR TEKL E +TY Q+LPY DRL
Sbjct: 15 FTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIEAKTYFQALPYFDRL 74
Query: 343 DYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGV 402
DYVSMMC EH Y +++E LL + IP RAQ+IRV+F EITR+LNHL+ +G H++D+GAM
Sbjct: 75 DYVSMMCQEHTYALSVENLLQVSIPRRAQFIRVLFAEITRILNHLLAVGCHAMDVGAMTP 134
Query: 403 LLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNE 462
L+AF ERE L++ YE VSGARMHA+Y+RPGGV +D+
Sbjct: 135 FLWAFEEREKLMEFYERVSGARMHASYFRPGGVSQDISV--------------------- 173
Query: 463 NRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLR 522
L+D I F +F + +DE E +LTDNRIW++RLV IGVVS + A+ GF+G MLR
Sbjct: 174 ----GLVDDIFAFVAQFGQRLDEIEEMLTDNRIWQERLVDIGVVSAQEAIDWGFSGVMLR 229
Query: 523 GSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSN 582
GSG++WDLRK +PYEIY+ LNF +GK GD YDRYL R+EEMRQS II QC+ +
Sbjct: 230 GSGIRWDLRKNEPYEIYSDLNFQGVVGKTGDCYDRYLARVEEMRQSLSIIYQCLN--KMP 287
Query: 583 KGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLV 642
+G V ++ KI+ P+R +K +ME LIHHFKL+TEG +VP GE Y+ E PKGEFG+YLV
Sbjct: 288 RGSVKIDDAKISPPSRSEVKQSMESLIHHFKLYTEGVFVPAGETYTATEAPKGEFGVYLV 347
Query: 643 SDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
S G+++PYR KI++PGF+HLQ L+ M HM++DVVTIIGTQDIVFGE+DR
Sbjct: 348 SKGSSRPYRCKIKAPGFSHLQGLNFMACSHMLADVVTIIGTQDIVFGEVDR 398
>gi|353526600|ref|YP_004927668.1| NADH dehydrogenase subunit 7 (mitochondrion) [Treubia lacunosa]
gi|336089526|gb|AEH99715.1| NADH dehydrogenase subunit 7 [Treubia lacunosa]
Length = 393
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 242/418 (57%), Positives = 307/418 (73%), Gaps = 33/418 (7%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK++ NFGPQHPAAHGVLRL+LE+ GEVV +A+PHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 6 QIKNFTFNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQALPY 65
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM EHAY +A+E+L N ++P+RAQYIRV+F EITR+LNHL+ + +H++D+G
Sbjct: 66 FDRLDYVSMMAQEHAYSLAVERLCNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMDVG 125
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+AF ERE LL+ YE VSGARMHA+Y RPGGV +DLP
Sbjct: 126 ALTPFLWAFEEREKLLEFYERVSGARMHASYIRPGGVAQDLP------------------ 167
Query: 459 ILNENRQGSLLDFIED---FTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMG 515
L ED FT +F IDE E +LT+NRIWKQRLV IG V+ ++A+ G
Sbjct: 168 ----------LGLSEDIFLFTQQFASRIDELEEMLTNNRIWKQRLVNIGTVTAQQAVDWG 217
Query: 516 FTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQC 575
F+G MLRGSGV WDLRK PY++Y+ L+FD+P+G GD YDRY +RIEEMRQS +II QC
Sbjct: 218 FSGVMLRGSGVCWDLRKSAPYDVYDRLDFDVPVGTRGDCYDRYCIRIEEMRQSIRIIMQC 277
Query: 576 IKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
+ + S G + +++ K+ P+R MK +ME LIHHFKL+TEG +P Y+ VE PKG
Sbjct: 278 LNQMPS--GMIKADDRKLCPPSRSQMKQSMESLIHHFKLYTEGVSIPASSTYTAVEAPKG 335
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFG+++VS+G N+PYR KIR+PGFAHLQ L M HM++DVVTIIGTQDIVFGE+DR
Sbjct: 336 EFGVFIVSNGTNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 393
>gi|99036040|ref|ZP_01315077.1| hypothetical protein Wendoof_01000071 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 384
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 240/409 (58%), Positives = 307/409 (75%), Gaps = 27/409 (6%)
Query: 285 LNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDY 344
LNFGPQHPAAHGVLRL+LE++GEV+ +ADPHIGLLHR TEKL E +TYLQ+LPY DRLDY
Sbjct: 3 LNFGPQHPAAHGVLRLVLEMDGEVIERADPHIGLLHRGTEKLIEHKTYLQALPYFDRLDY 62
Query: 345 VSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLL 404
VS M EHAY + +EKLL ++PIRA+Y+RV+F E+TR+LNHL+ + S +LD+GAM LL
Sbjct: 63 VSPMSQEHAYSLCVEKLLQCEVPIRAKYLRVLFCELTRILNHLLNVSSQALDVGAMTPLL 122
Query: 405 YAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENR 464
+ F ERE +L+ YE SGAR HAAY RPGG+ D+PE
Sbjct: 123 WLFEEREKILEFYERASGARFHAAYIRPGGIAADVPE----------------------- 159
Query: 465 QGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGS 524
L++ I F +FPK ID+ + LLT+NRIWKQR VGI +S ++AL GF+GPMLR +
Sbjct: 160 --DLIEDIAKFIEQFPKYIDDVDELLTENRIWKQRTVGISEISIKQALDWGFSGPMLRAA 217
Query: 525 GVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKG 584
G+ WDLRK QPYEIY+ L+FDIPIG+NGD YDRYLVR+ E+RQS ++KQCI+ + +G
Sbjct: 218 GLAWDLRKSQPYEIYDQLDFDIPIGQNGDCYDRYLVRMAEIRQSISLVKQCIE--KMPEG 275
Query: 585 PVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSD 644
+ + + KI+ P+R MK +ME LIHHFKL++EG++VP GE Y+ VE PKGEFG+Y+VSD
Sbjct: 276 QIKTEDRKISPPSRAEMKKSMEALIHHFKLYSEGYHVPEGEAYAVVEAPKGEFGVYIVSD 335
Query: 645 GANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G N+PYR +IR+PGFAHLQ+L M GHM++DV IIG+ DIVFGEIDR
Sbjct: 336 GTNRPYRCRIRAPGFAHLQALDFMAKGHMLADVAAIIGSLDIVFGEIDR 384
>gi|195450785|ref|XP_002072632.1| GK13585 [Drosophila willistoni]
gi|194168717|gb|EDW83618.1| GK13585 [Drosophila willistoni]
Length = 469
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 235/414 (56%), Positives = 310/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+++ LNFGPQHPAAHGVLRL+LEL+GE V +ADPHIGLLHR TEKL E +TY Q+LPY
Sbjct: 83 VRNLTLNFGPQHPAAHGVLRLVLELDGETVMRADPHIGLLHRGTEKLIEYKTYTQALPYF 142
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE Y +A+EKLLNI +P+RA+YIR +F EITR+LNH+M +G+H+LD+GA
Sbjct: 143 DRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRILNHIMAVGTHALDVGA 202
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ + F ERE +++ YE VSGARMHAAY RPGGV D+P
Sbjct: 203 LTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPL------------------ 244
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I +F ++F + +DE E +L+ NRIW QR IG+V+ E AL+ GF+G
Sbjct: 245 -------GLMDDIYEFASKFAERLDEVEDVLSTNRIWVQRTEDIGIVTAEEALNYGFSGV 297
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG+KWDLRK+QPY+ Y+L++FD+PIG GD YDRYL R+EEMRQS +II QC+ +
Sbjct: 298 MLRGSGIKWDLRKQQPYDAYHLVDFDVPIGTKGDCYDRYLCRVEEMRQSLRIIDQCLNQM 357
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + +++ K+T P+R MK++ME LIHHFKLFT+G+ VP G Y+ +E PKGEFG+
Sbjct: 358 PA--GEIKTDDAKVTPPSRAEMKTSMEALIHHFKLFTQGYQVPPGATYTAIEAPKGEFGV 415
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLV+DG+++PYR KI++PGFAHL +L ++ HM++DVV IIGT D+VFGEIDR
Sbjct: 416 YLVADGSSRPYRCKIKAPGFAHLAALEKIGKQHMLADVVAIIGTLDVVFGEIDR 469
>gi|195172536|ref|XP_002027053.1| GL18172 [Drosophila persimilis]
gi|194112831|gb|EDW34874.1| GL18172 [Drosophila persimilis]
Length = 452
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 238/414 (57%), Positives = 310/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+++ LNFGPQHPAAHGVLRL+LEL+GE V +ADPHIGLLHR TEKL E +TY Q+LPY
Sbjct: 66 VRNLTLNFGPQHPAAHGVLRLVLELDGETVMRADPHIGLLHRGTEKLIEYKTYTQALPYF 125
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE Y +A+EKLLNI +P+RA+YIR +F EITR+LNH+M +G+H+LD+GA
Sbjct: 126 DRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRILNHIMAVGTHALDVGA 185
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ + F ERE +++ YE VSGARMHAAY RPGGV D+P
Sbjct: 186 LTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPI------------------ 227
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I +F ++F + +DE E +L+ NRIW QR IG+V+ E AL+ GF+G
Sbjct: 228 -------GLMDDIYEFASKFAERLDEVEDVLSTNRIWVQRTEDIGIVTAEEALNYGFSGV 280
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG+KWDLRK+QPY+ Y+L++FD+PIG GD YDRYL RIEEMRQS +II QC+ +
Sbjct: 281 MLRGSGIKWDLRKQQPYDAYHLVDFDVPIGTKGDCYDRYLCRIEEMRQSLRIIDQCLNQM 340
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + +++ K+T P+R MK++ME LIHHFKLFT+GF VP G Y+ +E PKGEFG+
Sbjct: 341 PA--GEIKTDDAKVTPPSRSEMKTSMEALIHHFKLFTQGFQVPPGATYTAIEAPKGEFGV 398
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL +L ++ HM++DVV IIGT D+VFGEIDR
Sbjct: 399 YLVSDGSSRPYRCKIKAPGFAHLAALEKIGKQHMLADVVAIIGTLDVVFGEIDR 452
>gi|449016925|dbj|BAM80327.1| NADH dehydrogenase I iron-sulfur protein 49kDa subunit
[Cyanidioschyzon merolae strain 10D]
Length = 488
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 240/415 (57%), Positives = 309/415 (74%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI+++ LNFGPQHPAAHGVLRL+L+L+GEVV DPH+GLLHR TEKL E +TYLQ+LPY
Sbjct: 101 EIRNFTLNFGPQHPAAHGVLRLVLQLDGEVVESTDPHVGLLHRGTEKLMEYKTYLQALPY 160
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDY SM+CNE + +A+EKLL I++P+RA+YIR MF EITR+ NHL+ + +H++D+G
Sbjct: 161 MDRLDYCSMLCNEQVFCLAVEKLLKIEVPLRAKYIRTMFAEITRISNHLLAVTTHAMDVG 220
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+AF ERE + +E VSGARMHA Y+RPGGV++DLP
Sbjct: 221 ALTPFLWAFEEREKTFEFFERVSGARMHANYFRPGGVHQDLPL----------------- 263
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L D I + +F +DE E +LT+NRIWKQRLVGIGV+S E AL+ GFTG
Sbjct: 264 --------GLCDDIYAWCRQFASRVDEIEEMLTNNRIWKQRLVGIGVLSAEDALNWGFTG 315
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLR SGV WD+RK QPY+ Y ++F IP+G GDSYDRYLVR+EEMRQS II+QC+
Sbjct: 316 PMLRASGVPWDIRKVQPYDAYAYVDFKIPVGVYGDSYDRYLVRVEEMRQSLDIIQQCLNQ 375
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ S G + ++ K++ P+R +MKS+ME LIHHFKL++EGF VP GE Y VE PKGE G
Sbjct: 376 MPS--GEIRVDDRKVSPPSRHDMKSSMESLIHHFKLYSEGFVVPAGETYVAVEAPKGEEG 433
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY++SDG N+PYR+ IR+PGFAHL L+ + GHMI+DVVT++GT D+VFGE+DR
Sbjct: 434 IYMISDGTNRPYRVHIRAPGFAHLSGLNMLARGHMIADVVTLVGTLDLVFGEVDR 488
>gi|198458678|ref|XP_002136151.1| GA25154 [Drosophila pseudoobscura pseudoobscura]
gi|198142383|gb|EDY71141.1| GA25154 [Drosophila pseudoobscura pseudoobscura]
Length = 440
Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust.
Identities = 238/414 (57%), Positives = 310/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+++ LNFGPQHPAAHGVLRL+LEL+GE V +ADPHIGLLHR TEKL E +TY Q+LPY
Sbjct: 54 VRNLTLNFGPQHPAAHGVLRLVLELDGETVMRADPHIGLLHRGTEKLIEYKTYTQALPYF 113
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE Y +A+EKLLNI +P+RA+YIR +F EITR+LNH+M +G+H+LD+GA
Sbjct: 114 DRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRILNHIMAVGTHALDVGA 173
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ + F ERE +++ YE VSGARMHAAY RPGGV D+P
Sbjct: 174 LTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPI------------------ 215
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I +F ++F + +DE E +L+ NRIW QR IG+V+ E AL+ GF+G
Sbjct: 216 -------GLMDDIYEFASKFAERLDEVEDVLSTNRIWVQRTEDIGIVTAEEALNYGFSGV 268
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG+KWDLRK+QPY+ Y+L++FD+PIG GD YDRYL RIEEMRQS +II QC+ +
Sbjct: 269 MLRGSGIKWDLRKQQPYDAYHLVDFDVPIGTKGDCYDRYLCRIEEMRQSLRIIDQCLNQM 328
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + +++ K+T P+R MK++ME LIHHFKLFT+GF VP G Y+ +E PKGEFG+
Sbjct: 329 PA--GEIKTDDAKVTPPSRSEMKTSMEALIHHFKLFTQGFQVPPGATYTAIEAPKGEFGV 386
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL +L ++ HM++DVV IIGT D+VFGEIDR
Sbjct: 387 YLVSDGSSRPYRCKIKAPGFAHLAALEKIGKQHMLADVVAIIGTLDVVFGEIDR 440
>gi|194913546|ref|XP_001982722.1| GG16443 [Drosophila erecta]
gi|190647938|gb|EDV45241.1| GG16443 [Drosophila erecta]
Length = 468
Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust.
Identities = 236/414 (57%), Positives = 309/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+++ LNFGPQHPAAHGVLRL+LEL+GE V +ADPHIGLLHR TEKL E +TY Q+LPY
Sbjct: 82 VRNLTLNFGPQHPAAHGVLRLVLELDGETVMRADPHIGLLHRGTEKLIEYKTYTQALPYF 141
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE Y +A+EKLLNI +P+RA+YIR +F EITR+LNH+M +G+H+LD+GA
Sbjct: 142 DRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRILNHIMAVGTHALDVGA 201
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ + F ERE +++ YE VSGARMHAAY RPGGV D+P
Sbjct: 202 LTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPL------------------ 243
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I +F ++F + +DE E +LT NRIW QR IG+V+ E AL+ GF+G
Sbjct: 244 -------GLMDDIYEFASKFAERLDEVEDVLTTNRIWVQRTEDIGIVTAEEALNYGFSGV 296
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG+KWDLRK+QPY+ Y+L++FD+PIG GD YDRYL R+EEMRQS +II QC+ +
Sbjct: 297 MLRGSGIKWDLRKQQPYDAYHLVDFDVPIGTKGDCYDRYLCRVEEMRQSLRIIDQCLNQM 356
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + S++ K+ P+R MK++ME LIHHFKLFT+G+ VP G Y+ +E PKGEFG+
Sbjct: 357 PA--GEIKSDDAKVAPPSRSEMKTSMEALIHHFKLFTQGYQVPPGATYTAIEAPKGEFGV 414
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YL+SDG+++PYR KI++PGFAHL +L ++ HM++DVV IIGT D+VFGEIDR
Sbjct: 415 YLISDGSSRPYRCKIKAPGFAHLAALEKIGKQHMLADVVAIIGTLDVVFGEIDR 468
>gi|386800455|ref|YP_006280978.1| nad7 gene product (mitochondrion) [Helicosporidium sp. ex Simulium
jonesi]
gi|253807627|gb|ACT36205.1| NADH dehydrogenase subunit 7 [Helicosporidium sp. ex Simulium
jonesi]
Length = 398
Score = 507 bits (1305), Expect = e-140, Method: Compositional matrix adjust.
Identities = 242/421 (57%), Positives = 309/421 (73%), Gaps = 27/421 (6%)
Query: 273 KDFPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTY 332
K V +++++ +NFGPQHPAAHGVLRL+LE+ GEVV++ DPHIGLLHR TEKL E + Y
Sbjct: 5 KALSVPKLQNFTINFGPQHPAAHGVLRLVLEMNGEVVQRCDPHIGLLHRGTEKLIEYKNY 64
Query: 333 LQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGS 392
+Q+LPY DRLDYVSMMC E AY +A+E LLNI+ P RAQYIRV+F EITR+LNHL+ +
Sbjct: 65 MQALPYFDRLDYVSMMCQEQAYSLAVENLLNIEAPKRAQYIRVLFAEITRILNHLLALTC 124
Query: 393 HSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIR 452
H++D+GA+ L+ F ERE L++ YE VSGAR+HAAY RPGGV DLP + Q
Sbjct: 125 HAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVTYDLPIGLSQD------ 178
Query: 453 NNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERAL 512
I F +F IDE E +LT NRIWKQRLV IGVVS E+A+
Sbjct: 179 -------------------IYQFARQFASRIDEIEEMLTSNRIWKQRLVDIGVVSAEQAM 219
Query: 513 SMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKII 572
S GF+G +LR SG+ WDLRK QPY++Y+ + FD+PIG GD YDRYL+R+EEMRQS +II
Sbjct: 220 SWGFSGALLRASGIAWDLRKTQPYDVYDQMEFDVPIGTRGDCYDRYLIRVEEMRQSLRII 279
Query: 573 KQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEH 632
QC+ + + G + ++++KIT P+R MK +ME LIHHFK +++GF VP GEIY VE
Sbjct: 280 MQCLNEMPN--GIIRTDDHKITPPSRFEMKDSMEALIHHFKYYSQGFLVPAGEIYMGVEA 337
Query: 633 PKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEID 692
PKGEFG+YLVS+G ++PYR KIR+PGFAHLQ L M H+++DVVTI+GTQDIVFGE+D
Sbjct: 338 PKGEFGVYLVSNGTHRPYRCKIRAPGFAHLQGLDFMARNHLLADVVTIVGTQDIVFGEVD 397
Query: 693 R 693
R
Sbjct: 398 R 398
>gi|403294071|ref|XP_003938028.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Saimiri boliviensis boliviensis]
Length = 462
Score = 507 bits (1305), Expect = e-140, Method: Compositional matrix adjust.
Identities = 248/414 (59%), Positives = 310/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+K+ KLNFGPQHPAAHGVLRL++EL GE VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 76 VKNMKLNFGPQHPAAHGVLRLVMELSGENVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 135
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P+RAQ+IRV+F EITRL+NH+M + +H+LDIGA
Sbjct: 136 DRLDYVSMMCNEQAYSLAVEKLLNIRPPLRAQWIRVLFGEITRLMNHVMAVTTHALDIGA 195
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 196 MTPFFWLFEEREKMFEFYERVSGARMHAAYVRPGGVHQDLPL------------------ 237
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I +F+ F +DE E LLT+NRIWK R V IGVV+ E AL+ GF+G
Sbjct: 238 -------GLMDDIYEFSKNFSLRLDELEELLTNNRIWKNRTVDIGVVTAEEALNYGFSGV 290
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ + FD+PIG +GD YDRYL R+EEMRQS +II QC+
Sbjct: 291 MLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSHGDCYDRYLCRVEEMRQSLRIIVQCLN-- 348
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 349 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 408
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL +L M GHM++DVV IIGTQDIVFGEIDR
Sbjct: 409 YLVSDGSSRPYRCKIKAPGFAHLAALDRMSKGHMLADVVAIIGTQDIVFGEIDR 462
>gi|209964547|ref|YP_002297462.1| NADH-quinone oxidoreductase subunit D [Rhodospirillum centenum SW]
gi|229891300|sp|B6ISX8.1|NUOD_RHOCS RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|209958013|gb|ACI98649.1| NADH-quinone oxidoreductase chain D [Rhodospirillum centenum SW]
Length = 398
Score = 507 bits (1305), Expect = e-140, Method: Compositional matrix adjust.
Identities = 243/415 (58%), Positives = 302/415 (72%), Gaps = 25/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK + +NFGPQHPAAHGVLRL+LE++GEVV++ADPH+GLLHR TEKL E +TY+Q+LPY
Sbjct: 9 QIKPFTMNFGPQHPAAHGVLRLVLEMDGEVVQRADPHVGLLHRGTEKLIEYKTYIQALPY 68
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVS M EHA+ +A EKLL I +P+R QYIRV+F EITR+LNHL+ I + LD+G
Sbjct: 69 FDRLDYVSPMSQEHAFALATEKLLGITVPVRGQYIRVLFSEITRILNHLLNITTFGLDVG 128
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE VSGARMHA Y+RPGGV D+P
Sbjct: 129 AITPSLWGFEEREKLMAFYERVSGARMHANYFRPGGVNLDMP------------------ 170
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L D I ++T RFPK + + LLT+NRI+KQR V IGVVS AL+ GF+G
Sbjct: 171 -------AGLADDIWEYTERFPKFVADLNNLLTENRIFKQRTVDIGVVSRADALAWGFSG 223
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PM+RGSGV WDLRK QPY+ Y+ +FDIP+G GD Y RYLVR+EEMRQSN++I+Q ++
Sbjct: 224 PMIRGSGVPWDLRKAQPYDRYDEFDFDIPVGSTGDCYARYLVRMEEMRQSNRLIRQALEK 283
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L GPV N+ KI P R MK +ME LIHHFKL+TEG++VP GE Y+ VE PKGEFG
Sbjct: 284 LAKTPGPVKVNDRKIAPPPRGEMKRSMESLIHHFKLYTEGYHVPAGETYTAVESPKGEFG 343
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG N+PYR KIR GF+HLQ++ M GHM++D V IIG+ DIVFGEIDR
Sbjct: 344 VYLVSDGTNRPYRCKIRPTGFSHLQAMDFMSKGHMLADTVAIIGSMDIVFGEIDR 398
>gi|195133988|ref|XP_002011420.1| GI14091 [Drosophila mojavensis]
gi|193912043|gb|EDW10910.1| GI14091 [Drosophila mojavensis]
Length = 449
Score = 507 bits (1305), Expect = e-140, Method: Compositional matrix adjust.
Identities = 239/414 (57%), Positives = 309/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+++ LNFGPQHPAAHGVLRL+LEL+GE V +ADPHIGLLHR TEKL E +TY Q+LPY
Sbjct: 63 VRNLTLNFGPQHPAAHGVLRLVLELDGETVMRADPHIGLLHRGTEKLIEYKTYTQALPYF 122
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE Y +A+EKLLNI +P+RA+YIR +F EITR+LNH+M +G+H+LD+GA
Sbjct: 123 DRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRILNHIMAVGTHALDVGA 182
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ + F ERE +++ YE VSGARMHAAY RPGGV D+P
Sbjct: 183 LTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPL------------------ 224
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD I +F ++F + +DE E +L+ NRIW QR IG+VS E AL+ GF+G
Sbjct: 225 -------GLLDDIYEFASKFGERLDEVEDVLSTNRIWVQRTEDIGIVSAEEALNYGFSGV 277
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG+KWDLRK+QPY+ Y+L++FD+PIG GD YDRYL RIEEMRQS +II QC+ +
Sbjct: 278 MLRGSGIKWDLRKQQPYDAYHLVDFDVPIGTKGDCYDRYLCRIEEMRQSLRIIDQCLNQM 337
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
G V +++ K+T P+R MK++ME LIHHFKLFT+G+ VP G Y+ +E PKGEFG+
Sbjct: 338 --PPGEVKTDDAKVTPPSRSEMKTSMEALIHHFKLFTQGYQVPPGATYTAIEAPKGEFGV 395
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YL+SDG+++PYR KI++PGFAHL +L ++ HM++DVV IIGT D+VFGEIDR
Sbjct: 396 YLISDGSSRPYRCKIKAPGFAHLAALEKIGKQHMLADVVAIIGTLDVVFGEIDR 449
>gi|344923488|ref|ZP_08776949.1| NADH dehydrogenase subunit D [Candidatus Odyssella thessalonicensis
L13]
Length = 390
Score = 506 bits (1304), Expect = e-140, Method: Compositional matrix adjust.
Identities = 240/413 (58%), Positives = 307/413 (74%), Gaps = 27/413 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
K+Y LNFGPQHPA HGVLRL+L+L+GEVV +ADPHIG LHR TEKL E +TYLQ+LPY D
Sbjct: 5 KTYTLNFGPQHPATHGVLRLLLDLDGEVVERADPHIGFLHRGTEKLIEYKTYLQALPYFD 64
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYV+ M EHAY++A+EKLLN+K+P RAQYIRV+F E+ R+ NHL+ I + ++D+GA+
Sbjct: 65 RLDYVAPMNQEHAYILAVEKLLNVKVPSRAQYIRVLFSELGRITNHLLNITTFAMDVGAI 124
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
LLY F ERE +++ YE V GAR+HAAY RPGGV++D+
Sbjct: 125 TPLLYGFEEREKIMEFYERVCGARLHAAYVRPGGVHQDM--------------------- 163
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
+L+ I F FPK ID+ E LLT+NRI+KQR V IGV+S + AL GFTGP+
Sbjct: 164 ----TPNLIADIYQFAQSFPKVIDDIEELLTENRIFKQRTVDIGVISAQDALDWGFTGPV 219
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
LR SGV WDLRK QPYEIY L+FDIP GK GD YDRYLVR+ EMR+S K+++QCI +
Sbjct: 220 LRASGVPWDLRKSQPYEIYEELDFDIPTGKYGDCYDRYLVRVAEMRESVKLVQQCIDKMP 279
Query: 581 SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIY 640
+ GP+++++ K+T P R MK +ME LIHHFKL+TEGF+VP GE+Y+ VE PKGEFG+Y
Sbjct: 280 T--GPIVTDDRKVTPPPRTEMKHSMEALIHHFKLYTEGFHVPAGEVYTAVEAPKGEFGVY 337
Query: 641 LVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
L+SD +N+PYR KIR+PGFA LQ+ + GHM++DV I+G+ DIVFGEIDR
Sbjct: 338 LISDDSNRPYRCKIRAPGFAFLQATDFLSRGHMLADVTAIVGSLDIVFGEIDR 390
>gi|432921327|ref|XP_004080103.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial-like [Oryzias latipes]
Length = 466
Score = 506 bits (1304), Expect = e-140, Method: Compositional matrix adjust.
Identities = 243/422 (57%), Positives = 309/422 (73%), Gaps = 28/422 (6%)
Query: 273 KDFPV-IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRT 331
KD P ++ + +NFGPQHPAAHGVLRL++EL GE V+K DPHIGLLHR TEKL E +T
Sbjct: 72 KDPPAEKDVSNLTINFGPQHPAAHGVLRLVMELSGESVKKCDPHIGLLHRGTEKLIEYKT 131
Query: 332 YLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIG 391
YLQ+LPY DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV++ E+TR+LNH+M +
Sbjct: 132 YLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQAPPRAQWIRVLYGELTRILNHIMAVT 191
Query: 392 SHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSII 451
+H+LDIGAM + F ERE + + YE VSGARMHAAY RPGGV++D+P
Sbjct: 192 THALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYVRPGGVHQDMPL---------- 241
Query: 452 RNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERA 511
L+D I ++ F IDE E +LT+NRIWK R VGIGVV+ E A
Sbjct: 242 ---------------GLMDDIYEWCKNFSIRIDEVEEMLTNNRIWKNRTVGIGVVTAEEA 286
Query: 512 LSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKI 571
L+ GF+G MLRGSG+KWDLRK QPY+ Y+ + FD+PIG NGD YDRYL R+EEMRQS +I
Sbjct: 287 LNYGFSGVMLRGSGIKWDLRKSQPYDKYDEVEFDVPIGSNGDCYDRYLCRVEEMRQSLRI 346
Query: 572 IKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVE 631
+ + + + +G + ++ K+ P R MK++ME LIHHFKL+TEG+ VP G Y+ VE
Sbjct: 347 MHEALN--KMPEGEIKVDDAKVAPPKRSEMKTSMESLIHHFKLYTEGYQVPPGATYTAVE 404
Query: 632 HPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEI 691
PKGEFG+YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGTQDIVFGE+
Sbjct: 405 APKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMAKGHMLADVVAIIGTQDIVFGEV 464
Query: 692 DR 693
DR
Sbjct: 465 DR 466
>gi|357628760|gb|EHJ77963.1| NADH dehydrogenase-ubiquinone Fe-S protein 2 precursor [Danaus
plexippus]
Length = 466
Score = 506 bits (1304), Expect = e-140, Method: Compositional matrix adjust.
Identities = 252/475 (53%), Positives = 330/475 (69%), Gaps = 37/475 (7%)
Query: 223 LPRLHSITSLWSSANWYERE----AFDLFGIFFDGHDDLRRLLTDYGFVGHPFRKDFPVI 278
LP +++ S ++ W E F+ ++ DG +L + Y + P K
Sbjct: 25 LPGVYNANSQRNAHRWMPDEDFIKQFEGAVLYSDGRPELMKH-PPYNSIVAPAEK----- 78
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++K+ LNFGPQHPAAHGVLRL+LEL+GE VR ADPHIGLLHR TEKL E +TY Q+LPY
Sbjct: 79 QVKNMILNFGPQHPAAHGVLRLVLELDGETVRGADPHIGLLHRGTEKLIEYKTYTQALPY 138
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMMCNE Y +A+EKLLNI+ PIRA+YIR +F EITR+LNH+M +G+H+LD+G
Sbjct: 139 FDRLDYVSMMCNEQCYSLAVEKLLNIEAPIRAKYIRTLFAEITRILNHIMAVGTHALDVG 198
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ + F ERE +++ YE VSGARMHAAY RPGGV D+P
Sbjct: 199 ALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPL----------------- 241
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L+D I +F ++F + +DE E +LT NRIW QR +GVV+ + AL+ GF+G
Sbjct: 242 --------GLMDDIYEFASKFGERLDEVEDVLTTNRIWVQRTKDVGVVTAQDALNYGFSG 293
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+KWDLRK QPY+ Y+ + FD+PIG NGD YDRYL+R+EEMRQS +II QC+
Sbjct: 294 VMLRGSGIKWDLRKTQPYDAYDKVEFDVPIGTNGDCYDRYLIRVEEMRQSLRIIDQCLNQ 353
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ G V +++ K+T P+R MK++ME LIHHFKLFT+G+ VP G Y+ VE PKGEFG
Sbjct: 354 M--PPGEVKTDDAKLTPPSREEMKTSMEALIHHFKLFTQGYAVPPGATYTAVEAPKGEFG 411
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG +KPYR KI++PGFAHL +L ++ M++D+V IIGT D+VFGEIDR
Sbjct: 412 VYLVSDGGSKPYRCKIKAPGFAHLAALEKIGKNSMLADIVAIIGTLDVVFGEIDR 466
>gi|47209375|emb|CAF91411.1| unnamed protein product [Tetraodon nigroviridis]
Length = 462
Score = 506 bits (1304), Expect = e-140, Method: Compositional matrix adjust.
Identities = 245/422 (58%), Positives = 308/422 (72%), Gaps = 28/422 (6%)
Query: 273 KDFPV-IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRT 331
KD P E+ + +NFGPQHPAAHGVLRL++EL GE V+K DPHIGLLHR TEKL E +T
Sbjct: 68 KDPPAEKEVSNLTINFGPQHPAAHGVLRLVMELSGESVKKCDPHIGLLHRGTEKLIEYKT 127
Query: 332 YLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIG 391
YLQ+LPY DRLDYVSMMCNE AY +A+EKLLN++ P RAQ+IRV++ E+TR+LNH+M +
Sbjct: 128 YLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNVQAPPRAQWIRVLYGELTRILNHIMAVT 187
Query: 392 SHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSII 451
+H+LDIGAM + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 188 THALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYVRPGGVHQDLPL---------- 237
Query: 452 RNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERA 511
L+D I ++ F IDE E +LT+NRIWK R V IGVV+ E A
Sbjct: 238 ---------------GLMDDIYEWCQNFSIRIDEVEEMLTNNRIWKNRTVDIGVVTSEEA 282
Query: 512 LSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKI 571
L+ GF+G MLRGSG+KWDLRK QPY+ Y+ + FDIPIG NGD YDRYL R+EEMRQS +I
Sbjct: 283 LNYGFSGVMLRGSGIKWDLRKSQPYDKYDEVEFDIPIGSNGDCYDRYLCRVEEMRQSLRI 342
Query: 572 IKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVE 631
+ Q + + +G + ++ K+ P R MK++ME LIHHFKL+TEG+ VP G Y+ VE
Sbjct: 343 MHQALN--KMPEGEIKIDDAKVAPPKRSEMKTSMESLIHHFKLYTEGYQVPPGATYTAVE 400
Query: 632 HPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEI 691
PKGEFG+YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGTQDIVFGE+
Sbjct: 401 APKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSQGHMLADVVAIIGTQDIVFGEV 460
Query: 692 DR 693
DR
Sbjct: 461 DR 462
>gi|225708390|gb|ACO10041.1| NADH dehydrogenase iron-sulfur protein 2, mitochondrial precursor
[Osmerus mordax]
Length = 462
Score = 506 bits (1303), Expect = e-140, Method: Compositional matrix adjust.
Identities = 241/415 (58%), Positives = 304/415 (73%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
E+ + +NFGPQHPAAHGVLRL+LEL GE V+K DPH+GLLHR TEKL E +TYLQ+LPY
Sbjct: 75 EVSNLTINFGPQHPAAHGVLRLVLELSGESVKKCDPHVGLLHRGTEKLIEYKTYLQALPY 134
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMMCNE AY +A+EKLLNI+ P+RAQ+IRV+F E+TR+LNH+M I +H+LDIG
Sbjct: 135 FDRLDYVSMMCNEQAYSLAVEKLLNIQAPLRAQWIRVLFGELTRILNHIMAITTHALDIG 194
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM + F ERE + + YE VSGARMHAAY RPGGV++D+P
Sbjct: 195 AMTPFFWLFEEREKMFEFYERVSGARMHAAYVRPGGVHQDMPL----------------- 237
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L+D I ++ F IDE E +LT+NRIWK R V IG+V+ E AL+ GF+G
Sbjct: 238 --------GLMDDIYEWCKNFSIRIDEVEEMLTNNRIWKNRTVDIGIVTAEEALNYGFSG 289
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+KWDLRK QPY+ Y+ + FD+PIG NGD YDRYL R+EEMRQS +I+ + +
Sbjct: 290 VMLRGSGIKWDLRKSQPYDKYDEVEFDVPIGTNGDCYDRYLCRVEEMRQSLRIMLEALN- 348
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ G + ++ K+ P R MK +ME LIHHFKL+TEG+ VP G Y+ VE PKGEFG
Sbjct: 349 -KMPAGEIKVDDAKVAPPKRFEMKMSMESLIHHFKLYTEGYQVPPGATYTAVEAPKGEFG 407
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGTQDIVFGE+DR
Sbjct: 408 VYLVSDGSSRPYRCKIKAPGFAHLAGLDKMAKGHMLADVVAIIGTQDIVFGEVDR 462
>gi|51473548|ref|YP_067305.1| NADH dehydrogenase subunit D [Rickettsia typhi str. Wilmington]
gi|51459860|gb|AAU03823.1| NADH dehydrogenase (ubiquinone) subunit D [Rickettsia typhi str.
Wilmington]
Length = 404
Score = 506 bits (1303), Expect = e-140, Method: Compositional matrix adjust.
Identities = 244/413 (59%), Positives = 302/413 (73%), Gaps = 27/413 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
K+ LN GPQHPA HGVLRLILE++GEVV ADPHIGLLHR TEKL E +TYLQ++PY D
Sbjct: 19 KTITLNLGPQHPATHGVLRLILEMDGEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFD 78
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYVS MC EHA+ +A+E LL +P RAQ+IRV+F E+TR+LNH + IGS +LDIGA
Sbjct: 79 RLDYVSPMCQEHAFALAVESLLECSVPRRAQFIRVLFSELTRILNHTLNIGSQALDIGAT 138
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
LL+ F ERE +++ YE VSG+RMHA Y+RPGGV DLPE
Sbjct: 139 TPLLWLFEEREKIMEFYERVSGSRMHANYFRPGGVAEDLPE------------------- 179
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
LL+ I F +FP +++ E LL +NR+WKQRLV IGVVS + A+ GF+GPM
Sbjct: 180 ------KLLEDINKFIEQFPSKLNDIENLLNENRLWKQRLVDIGVVSQKDAMDWGFSGPM 233
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
LRGSG+ WDLRK PY++Y+ ++F++P+GKNGD YDRYLVRI EM +S KIIKQCI +
Sbjct: 234 LRGSGIAWDLRKSNPYDVYDEMDFEVPVGKNGDCYDRYLVRILEMYESIKIIKQCIA--K 291
Query: 581 SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIY 640
KG V ++N K+T P R MK +ME +IHHFKL+TEG+ VP+GE Y VE PKGEFG+Y
Sbjct: 292 MPKGQVKTDNPKLTPPTREKMKESMEAMIHHFKLYTEGYDVPIGETYKAVEAPKGEFGVY 351
Query: 641 LVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
L S G NKPYR +I++PGFAHLQ L+ M GH+ISDV+TII T DIVFGEIDR
Sbjct: 352 LYSQGGNKPYRCRIKAPGFAHLQGLNFMSKGHLISDVITIIATLDIVFGEIDR 404
>gi|195354391|ref|XP_002043681.1| GM26777 [Drosophila sechellia]
gi|194128869|gb|EDW50912.1| GM26777 [Drosophila sechellia]
Length = 468
Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust.
Identities = 235/414 (56%), Positives = 309/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+++ LNFGPQHPAAHGVLRL+LEL+GE V +ADPHIGLLHR TEKL E +TY Q+LPY
Sbjct: 82 VRNLTLNFGPQHPAAHGVLRLVLELDGETVMRADPHIGLLHRGTEKLIEYKTYTQALPYF 141
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE Y +A+EKLLNI +P+RA+YIR +F EITR+LNH+M +G+H+LD+GA
Sbjct: 142 DRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRILNHIMAVGTHALDVGA 201
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ + F ERE +++ YE VSGARMHAAY RPGGV D+P
Sbjct: 202 LTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPL------------------ 243
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I +F ++F + +DE E +LT NRIW QR IG+V+ + AL+ GF+G
Sbjct: 244 -------GLMDDIYEFASKFSERLDEVEDVLTTNRIWVQRTEDIGIVTADEALNYGFSGV 296
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG+KWDLRK+QPY+ Y+L+NFD+PIG GD YDRYL R+EEMRQS +II QC+ +
Sbjct: 297 MLRGSGIKWDLRKQQPYDAYHLVNFDVPIGTKGDCYDRYLCRVEEMRQSLRIIDQCLNQM 356
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + +++ K+ P+R MK++ME LIHHFKLFT+G+ VP G Y+ +E PKGEFG+
Sbjct: 357 PA--GEIKTDDAKVAPPSRSEMKTSMEALIHHFKLFTQGYQVPPGTTYTAIEAPKGEFGV 414
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YL+SDG+++PYR KI++PGFAHL +L ++ HM++DVV IIGT D+VFGEIDR
Sbjct: 415 YLISDGSSRPYRCKIKAPGFAHLAALEKIGKQHMLADVVAIIGTLDVVFGEIDR 468
>gi|195402219|ref|XP_002059704.1| GJ13840 [Drosophila virilis]
gi|194155918|gb|EDW71102.1| GJ13840 [Drosophila virilis]
gi|263359639|gb|ACY70475.1| hypothetical protein DVIR88_6g0012 [Drosophila virilis]
Length = 468
Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust.
Identities = 235/414 (56%), Positives = 311/414 (75%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+++ LNFGPQHPAAHGVLRL+LEL+GE V +ADPHIGLLHR TEKL E +TY Q+LPY
Sbjct: 82 VRNLTLNFGPQHPAAHGVLRLVLELDGETVMRADPHIGLLHRGTEKLIEYKTYTQALPYF 141
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE Y +A+EKLLNI++P+RA+YIR +F EITR+LNH+M +G+H+LD+GA
Sbjct: 142 DRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRTLFAEITRILNHIMAVGTHALDVGA 201
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ + F ERE +++ YE VSGARMHAAY RPGGV D+P
Sbjct: 202 LTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPL------------------ 243
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L++ I +F ++F + +DE E +L+ NRIW QR IG+VS E AL+ GF+G
Sbjct: 244 -------GLMNDIYEFASKFAERLDEVEDVLSTNRIWVQRTEDIGIVSAEEALNYGFSGV 296
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG+KWDLRK+QPY+ Y+L++FD+PIG GD YDRYL RIEEMRQS +II QC+ +
Sbjct: 297 MLRGSGIKWDLRKQQPYDAYHLVDFDVPIGTKGDCYDRYLCRIEEMRQSLRIIDQCLNQM 356
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + +++ K+T+P R MK++ME LIHHFKLF++G+ VP G Y+ +E PKGEFG+
Sbjct: 357 PA--GEIKTDDAKVTTPTRSEMKTSMEALIHHFKLFSQGYPVPPGATYTAIEAPKGEFGV 414
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YL+SDG+++PYR KI++PGFAHL +L ++ HM++DVV IIGT D+VFGEIDR
Sbjct: 415 YLISDGSSRPYRCKIKAPGFAHLAALEKIGKQHMLADVVAIIGTLDVVFGEIDR 468
>gi|10802908|gb|AAG23656.1|AF288091_1 NADH dehydrogenase subunit 7 [Thraustochytrium aureum]
Length = 397
Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust.
Identities = 246/415 (59%), Positives = 309/415 (74%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI+++ LNFGPQHPAAHGVLRL+LEL+GEVVRKADPH+GLLHR TEKL EQ+TYLQ+LPY
Sbjct: 10 EIQAFTLNFGPQHPAAHGVLRLVLELDGEVVRKADPHVGLLHRGTEKLVEQKTYLQALPY 69
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVS++ EH Y + +E LL++ IP+R+Q+IRV+F EITR+LNHL+ + H+LD+G
Sbjct: 70 FDRLDYVSIIAQEHTYSIGVETLLDLSIPLRSQFIRVIFLEITRILNHLLAVSCHALDVG 129
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ + F ERE L++ YE VSGARMHAAY RPGGV D+P+
Sbjct: 130 AITPFFWGFEEREKLIEFYERVSGARMHAAYVRPGGVSFDIPK----------------- 172
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LL+ I F F +DE+E LLT+NRIWKQRLV IGVVS + + GF+G
Sbjct: 173 --------GLLNDIFYFCESFKVRLDEFEELLTNNRIWKQRLVNIGVVSAADSKNWGFSG 224
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ WDLR+ PYE+YN L+F+IP+G NGD YDRYL+RIEE+RQS II Q I
Sbjct: 225 VMLRGSGIPWDLRQNFPYEVYNQLSFEIPVGSNGDCYDRYLIRIEEIRQSISIIVQAINL 284
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ +GPV S N K ++P++ MK+++E LIHHFK FTEGF V GE+Y E PKGEFG
Sbjct: 285 M--PEGPVKSFNYKFSNPSKKMMKNSIEALIHHFKYFTEGFPVNRGEVYVATEAPKGEFG 342
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++LVSDG+NKPYR KI++PGF+HLQ L M GH+I+DVVTIIGTQDIVFGE+DR
Sbjct: 343 VFLVSDGSNKPYRCKIKAPGFSHLQGLDFMSKGHLIADVVTIIGTQDIVFGEVDR 397
>gi|353327991|ref|ZP_08970318.1| NADH dehydrogenase subunit D [Wolbachia endosymbiont wVitB of
Nasonia vitripennis]
Length = 390
Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust.
Identities = 239/415 (57%), Positives = 308/415 (74%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++K+ LNFGPQHP AHGVLRL+LE++GEV+ +ADPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 3 DLKTMMLNFGPQHPTAHGVLRLVLEMDGEVIERADPHIGLLHRGTEKLIEHKTYLQALPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVS M EHAY + +EKLL ++PIRA+Y+RV+F E+TR+LNHL+ I S +LD+G
Sbjct: 63 FDRLDYVSPMSQEHAYSLCVEKLLQCEVPIRAKYLRVLFCELTRILNHLLNISSQALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM LL+ F ERE +L+ YE SGAR HAAY RPGG+ D+PE
Sbjct: 123 AMTPLLWLFEEREKILEFYERASGARFHAAYIRPGGLAADIPE----------------- 165
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L++ I F +FPK ID+ + LLT+NRIWKQR VGI +S ++AL GF+G
Sbjct: 166 --------GLIEDIAKFIEQFPKYIDDVDELLTENRIWKQRTVGISEISIKQALDWGFSG 217
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLR +G+ WDLRK QPYEIY+ L+F IPIG+NGD YDRYLVR+ E+RQS ++KQCI+
Sbjct: 218 PMLRAAGLAWDLRKSQPYEIYDQLDFGIPIGQNGDCYDRYLVRMAEIRQSVSLVKQCIE- 276
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ +GP+ + + KI+ P R MK +ME +IHHFKL++EG++VP GE Y VE PKGEFG
Sbjct: 277 -KMPEGPIKTEDRKISPPPRAEMKESMEAMIHHFKLYSEGYHVPEGEAYVAVEAPKGEFG 335
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDG N+PYR +IR+PGFAHLQ+L M GHM++D+ IIG+ DIVFGEIDR
Sbjct: 336 VYIVSDGTNRPYRCRIRAPGFAHLQALDFMAKGHMLADIAAIIGSLDIVFGEIDR 390
>gi|383752323|ref|YP_005427423.1| NADH dehydrogenase subunit D [Rickettsia typhi str. TH1527]
gi|383843160|ref|YP_005423663.1| NADH dehydrogenase subunit D [Rickettsia typhi str. B9991CWPP]
gi|147705294|sp|Q68X19.2|NUOD_RICTY RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|380758966|gb|AFE54201.1| NADH dehydrogenase subunit D [Rickettsia typhi str. TH1527]
gi|380759807|gb|AFE55041.1| NADH dehydrogenase subunit D [Rickettsia typhi str. B9991CWPP]
Length = 389
Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust.
Identities = 244/413 (59%), Positives = 302/413 (73%), Gaps = 27/413 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
K+ LN GPQHPA HGVLRLILE++GEVV ADPHIGLLHR TEKL E +TYLQ++PY D
Sbjct: 4 KTITLNLGPQHPATHGVLRLILEMDGEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFD 63
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYVS MC EHA+ +A+E LL +P RAQ+IRV+F E+TR+LNH + IGS +LDIGA
Sbjct: 64 RLDYVSPMCQEHAFALAVESLLECSVPRRAQFIRVLFSELTRILNHTLNIGSQALDIGAT 123
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
LL+ F ERE +++ YE VSG+RMHA Y+RPGGV DLPE
Sbjct: 124 TPLLWLFEEREKIMEFYERVSGSRMHANYFRPGGVAEDLPE------------------- 164
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
LL+ I F +FP +++ E LL +NR+WKQRLV IGVVS + A+ GF+GPM
Sbjct: 165 ------KLLEDINKFIEQFPSKLNDIENLLNENRLWKQRLVDIGVVSQKDAMDWGFSGPM 218
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
LRGSG+ WDLRK PY++Y+ ++F++P+GKNGD YDRYLVRI EM +S KIIKQCI +
Sbjct: 219 LRGSGIAWDLRKSNPYDVYDEMDFEVPVGKNGDCYDRYLVRILEMYESIKIIKQCIA--K 276
Query: 581 SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIY 640
KG V ++N K+T P R MK +ME +IHHFKL+TEG+ VP+GE Y VE PKGEFG+Y
Sbjct: 277 MPKGQVKTDNPKLTPPTREKMKESMEAMIHHFKLYTEGYDVPIGETYKAVEAPKGEFGVY 336
Query: 641 LVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
L S G NKPYR +I++PGFAHLQ L+ M GH+ISDV+TII T DIVFGEIDR
Sbjct: 337 LYSQGGNKPYRCRIKAPGFAHLQGLNFMSKGHLISDVITIIATLDIVFGEIDR 389
>gi|406989828|gb|EKE09546.1| hypothetical protein ACD_16C00139G0014 [uncultured bacterium]
Length = 395
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 248/415 (59%), Positives = 308/415 (74%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
E +S+ LNFGPQHPA HGVLRLILE++GEVV +ADPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 8 EKQSFTLNFGPQHPATHGVLRLILEMDGEVVERADPHIGLLHRGTEKLIEYKTYLQAIPY 67
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVS M EHA+ +A+EKLL ++IP RA+YIRV+F EITR+LNHL+ I + ++D+G
Sbjct: 68 FDRLDYVSPMSQEHAFALAVEKLLGLEIPERAKYIRVLFCEITRILNHLLNITTMAIDVG 127
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM LL+ F ERE L+ YE VSGARMHA Y+RPGGV +DLP
Sbjct: 128 AMTPLLWGFEEREILMGFYERVSGARMHANYFRPGGVNKDLP------------------ 169
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L + I F NRFPK ID+ E LLT+NRI+KQR V IG ++ E+AL GFTG
Sbjct: 170 -------SDLAEDILAFANRFPKVIDDLEGLLTENRIFKQRTVNIGTMTAEQALDWGFTG 222
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLR S V WDLR+ QPYE+Y+ +F IP+GKNGD YDRYLVR+EEMRQS +II QC++
Sbjct: 223 PMLRASNVAWDLRRNQPYEVYDQFDFFIPVGKNGDCYDRYLVRMEEMRQSVRIIIQCLEK 282
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV ++ KI P R MK++ME LIHHFKL+TEG++VP GE Y+ VE PKGEFG
Sbjct: 283 MPA--GPVKVHDYKIVPPPRTEMKTSMEALIHHFKLYTEGYHVPAGETYTVVEAPKGEFG 340
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG+N PYR KIR+P FA +Q+ M GHM++DV +IIG+ DIVFGEIDR
Sbjct: 341 VYLVSDGSNMPYRCKIRAPSFAFMQAFDFMTKGHMLADVPSIIGSLDIVFGEIDR 395
>gi|83592893|ref|YP_426645.1| NADH dehydrogenase subunit D [Rhodospirillum rubrum ATCC 11170]
gi|386349624|ref|YP_006047872.1| NADH dehydrogenase subunit D [Rhodospirillum rubrum F11]
gi|123526695|sp|Q2RU37.1|NUOD_RHORT RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|83575807|gb|ABC22358.1| NADH dehydrogenase I, D subunit [Rhodospirillum rubrum ATCC 11170]
gi|346718060|gb|AEO48075.1| NADH dehydrogenase subunit D [Rhodospirillum rubrum F11]
Length = 392
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 250/415 (60%), Positives = 302/415 (72%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIKSY LNFGPQHPAAHGVLRL+LEL GEV+ +ADPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 5 EIKSYTLNFGPQHPAAHGVLRLVLELSGEVIERADPHIGLLHRGTEKLIEYKTYLQALPY 64
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDY M EHAYV+A+EKLL I +P RAQY+R +F+E+TRL+NH+M S +LDIG
Sbjct: 65 FDRLDYACPMNQEHAYVLAVEKLLGITVPPRAQYLRTLFNEVTRLINHIMNTTSMALDIG 124
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM LLY F ERE LL+ E SGARMHAA++RPGGV RD+P
Sbjct: 125 AMTPLLYGFEEREHLLEFSERASGARMHAAWFRPGGVARDVPP----------------- 167
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LL+ I F + FPK +D+ E LL +NRI+KQR V IG V+ ++AL GFTG
Sbjct: 168 --------DLLEDILKFCDSFPKYLDDVEHLLDENRIFKQRTVDIGKVTAQQALDWGFTG 219
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
P+LRG GV WDLRK QPY+ Y ++FDIP G NGD YDRYLVR+ E RQS +I++QCI+
Sbjct: 220 PVLRGCGVPWDLRKSQPYDAYAAMDFDIPTGANGDCYDRYLVRMAEQRQSIRIMRQCIE- 278
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ GPV + ++K+T P+R MKS+ME LIHHFKLFTEGF VP GE Y+ VE GEFG
Sbjct: 279 -KMPDGPVKAVDHKVTPPSRGEMKSSMEALIHHFKLFTEGFKVPEGETYTAVEAATGEFG 337
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG N+PYR KIRSPG+ HLQ L M GHM++DVV IG+ D+VFGEIDR
Sbjct: 338 VYLVSDGTNRPYRCKIRSPGYVHLQGLDLMSRGHMLADVVANIGSIDVVFGEIDR 392
>gi|170051629|ref|XP_001861851.1| NADH dehydrogenase iron-sulfur protein 2, mitochondrial [Culex
quinquefasciatus]
gi|167872807|gb|EDS36190.1| NADH dehydrogenase iron-sulfur protein 2, mitochondrial [Culex
quinquefasciatus]
Length = 469
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 239/414 (57%), Positives = 309/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+++ KLNFGPQHPAAHGVLRL+LEL+GE V ++DPHIGLLHR TEKL E +TY Q+LPY
Sbjct: 83 VRNVKLNFGPQHPAAHGVLRLVLELDGETVMRSDPHIGLLHRGTEKLIEYKTYTQALPYF 142
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE Y +A+EKLLNI IP+RA+YIRV+F EITR+LNH+M IG+H+LD+GA
Sbjct: 143 DRLDYVSMMCNEQCYSLAVEKLLNIDIPMRAKYIRVLFAEITRILNHIMAIGTHALDVGA 202
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ + F ERE +++ YE VSGARMHAAY RPGGV +D+P
Sbjct: 203 LTPFFWLFEEREKMMEFYERVSGARMHAAYVRPGGVSQDMPL------------------ 244
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD I +F ++F + +DE E +LT NRIW QR IG+VS E AL+ GF+G
Sbjct: 245 -------GLLDDIYEFASKFGERLDEVEDVLTTNRIWVQRTQDIGIVSAEDALNYGFSGV 297
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG+KWDLRK QPY+ Y+ + FD+PIG GD YDRYL R+EEMRQS +II QC+ +
Sbjct: 298 MLRGSGIKWDLRKSQPYDAYDQVEFDVPIGTKGDCYDRYLCRVEEMRQSLRIIDQCLNKM 357
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G V +++ K+ +P+R MK++ME LIHHFKLFT+G+ VP G Y+ +E PKGEFG+
Sbjct: 358 PA--GDVKTDDAKLCTPSRSEMKTSMEALIHHFKLFTQGYQVPPGSTYTAIEAPKGEFGV 415
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLV+DG+++PYR KI++PGFAHL +L + HM++D+V IIGT D+VFGEIDR
Sbjct: 416 YLVADGSSRPYRCKIKAPGFAHLAALDMVGKHHMLADIVAIIGTLDVVFGEIDR 469
>gi|156379389|ref|XP_001631440.1| predicted protein [Nematostella vectensis]
gi|156218480|gb|EDO39377.1| predicted protein [Nematostella vectensis]
Length = 412
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 247/422 (58%), Positives = 308/422 (72%), Gaps = 29/422 (6%)
Query: 274 DFPVIE--IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRT 331
D P+ E + + +NFGPQHPAAHGVLRL+LEL+GEVV +ADPHIGLLHR TEKL E +T
Sbjct: 18 DEPIPEKGVTNMTINFGPQHPAAHGVLRLVLELDGEVVVRADPHIGLLHRGTEKLIEYKT 77
Query: 332 YLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIG 391
YLQ+LPY DRLDYVSMM NE AY +A+EKLLNI IP RA++IRV+F EITRLLNH+M +
Sbjct: 78 YLQALPYFDRLDYVSMMTNEQAYSLAVEKLLNIDIPERAKWIRVLFGEITRLLNHIMGVT 137
Query: 392 SHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSII 451
+H+LD+GAM + F ERE L++ YE VSGARMHAAY RPGGV +D+P
Sbjct: 138 THALDVGAMTPFFWMFEEREKLMEFYERVSGARMHAAYVRPGGVSQDMPL---------- 187
Query: 452 RNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERA 511
L+D I F FP+ +D+ E +LT+NRIWKQR V IGVVS E A
Sbjct: 188 ---------------GLMDDIYQFIQTFPQRLDDVEEMLTNNRIWKQRTVDIGVVSVEDA 232
Query: 512 LSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKI 571
L+ GF+G MLRGSG+KWDLRK QPY+ Y+ + FD+PIGKNGD YDRYL R+EEMR+S KI
Sbjct: 233 LNYGFSGVMLRGSGIKWDLRKAQPYDRYDQVEFDVPIGKNGDCYDRYLCRMEEMRESLKI 292
Query: 572 IKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVE 631
I QC+ + G + ++ KI+ P R MK +ME LIHHFKL+TEG+ VP G Y+ +E
Sbjct: 293 ILQCLN--KMPPGEIKVDDAKISPPKRSEMKDSMESLIHHFKLYTEGYQVPPGGTYTAIE 350
Query: 632 HPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEI 691
PKGEFG+YLV+DG +KPYR KI++PGFAHL + GHM++DVV +IGT D+VFGE+
Sbjct: 351 APKGEFGVYLVADGTSKPYRCKIKAPGFAHLAGTDFITKGHMLADVVAVIGTLDVVFGEV 410
Query: 692 DR 693
DR
Sbjct: 411 DR 412
>gi|193632011|ref|XP_001947632.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial-like [Acyrthosiphon pisum]
Length = 462
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 241/415 (58%), Positives = 310/415 (74%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
E+K+ +NFGPQHPAAHGVLRL+LEL GEVV +ADPHIGLLHR TEKL E +TY Q+LPY
Sbjct: 75 EVKNMTINFGPQHPAAHGVLRLVLELAGEVVIRADPHIGLLHRGTEKLIEYKTYTQALPY 134
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMMCNE Y +A+EKLLNI IP+RA+YIR +F EITRLLNH+M IG+H+LDIG
Sbjct: 135 FDRLDYVSMMCNEQCYSLAVEKLLNIDIPLRAKYIRTLFAEITRLLNHIMAIGTHALDIG 194
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM + F ERE +++ YE VSGARMHAAY RPGGV +D+P
Sbjct: 195 AMTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSQDIPL----------------- 237
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L+D I F+++F + IDE E +LT+N IW R IGVVS E AL++GF+G
Sbjct: 238 --------GLMDDIYQFSSKFGERIDETEDMLTNNGIWIARTRDIGVVSAEDALNLGFSG 289
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+KWDLR+ QPY+ Y+L++FD+PIG GD YDRYL R+ EMRQS +II+QC+
Sbjct: 290 VMLRGSGIKWDLRQTQPYDAYHLVDFDVPIGARGDCYDRYLCRVAEMRQSLRIIEQCLNQ 349
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + G + +++ K+++P+R MK++ME LIHHFKLFT+G+ VP G Y+ +E PKGEFG
Sbjct: 350 MPA--GEIKTDDMKVSTPSRSEMKNSMEALIHHFKLFTQGYQVPPGATYTAIEAPKGEFG 407
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG +KPYR KI++PGFAHL +L ++ H ++D+V IIGT D+VFGEIDR
Sbjct: 408 VYLVSDGTSKPYRCKIKAPGFAHLAALDKIGKKHFLADIVAIIGTLDVVFGEIDR 462
>gi|163793190|ref|ZP_02187166.1| NADH dehydrogenase I, D subunit [alpha proteobacterium BAL199]
gi|159181836|gb|EDP66348.1| NADH dehydrogenase I, D subunit [alpha proteobacterium BAL199]
Length = 392
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 242/416 (58%), Positives = 310/416 (74%), Gaps = 27/416 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
++IK +NFGPQHPAAHGVLRL+LE++GEVV +ADPHIGLLHR TEKL E +TYLQ++P
Sbjct: 4 MQIKPLTMNFGPQHPAAHGVLRLVLEMDGEVVERADPHIGLLHRGTEKLIEYKTYLQAVP 63
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y DRLDYV+ M EHA+ +A+EKLL +++P R QYIRV++ EI R+LNHL+ + + +LD+
Sbjct: 64 YFDRLDYVAPMNQEHAFALAVEKLLRLEVPKRGQYIRVLYAEIGRVLNHLLNLTTFALDV 123
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GAM LL+ F ERE L+ YE VSGAR+HAAY+RPGGV++DLP
Sbjct: 124 GAMTPLLWGFEEREKLMGFYERVSGARLHAAYFRPGGVHQDLP----------------- 166
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
LL+ I+ + +FPK +D+ E+LLT+NRI+KQR V IGVVS + AL GF+
Sbjct: 167 --------AGLLEDIKAWAEQFPKFVDDMESLLTENRIFKQRTVDIGVVSRQEALDHGFS 218
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GP+LRGSGV WDLR QPY+ Y ++FD+P+GK GD Y RYLVR+EE+RQS +II QCI+
Sbjct: 219 GPVLRGSGVPWDLRVSQPYDAYAEMDFDVPVGKTGDCYARYLVRVEELRQSLRIIDQCIE 278
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
R GPV S++ KITSP R MK +ME LIHHFKL+TEG++VP GE Y+ VE PKGEF
Sbjct: 279 --RMPDGPVKSDDRKITSPKRAEMKQSMEALIHHFKLYTEGYHVPAGETYTAVEAPKGEF 336
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++LVSDG+NKPYR KIR+PGFA L + + GHM++D V IIG+ DIVFGEIDR
Sbjct: 337 AVFLVSDGSNKPYRCKIRAPGFAFLAATDFLTKGHMLADTVAIIGSLDIVFGEIDR 392
>gi|348525767|ref|XP_003450393.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial-like [Oreochromis niloticus]
Length = 466
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 245/422 (58%), Positives = 307/422 (72%), Gaps = 28/422 (6%)
Query: 273 KDFPV-IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRT 331
KD P ++ + +NFGPQHPAAHGVLRL++EL GE V+K DPHIGLLHR TEKL E +T
Sbjct: 72 KDPPAEKDVSNLTINFGPQHPAAHGVLRLVMELSGESVKKCDPHIGLLHRGTEKLIEYKT 131
Query: 332 YLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIG 391
YLQ+LPY DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV++ E+TR+LNH+M I
Sbjct: 132 YLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQAPPRAQWIRVLYGEMTRILNHIMAIT 191
Query: 392 SHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSII 451
+H+LDIGAM + F ERE + + YE VSGARMHAAY RPGGV++D+P
Sbjct: 192 THALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYVRPGGVHQDMPL---------- 241
Query: 452 RNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERA 511
L+D I ++ F IDE E +LT+NRIWK R V IGVVS E A
Sbjct: 242 ---------------GLMDDIYEWCKNFSIRIDEVEEMLTNNRIWKNRTVDIGVVSAEEA 286
Query: 512 LSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKI 571
L+ GF+G MLRGSG+KWDLRK QPY+ Y+ + FD+PIG NGD YDRYL R+EEMRQS +I
Sbjct: 287 LNYGFSGVMLRGSGIKWDLRKSQPYDKYDEVEFDVPIGSNGDCYDRYLCRVEEMRQSLRI 346
Query: 572 IKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVE 631
+ Q + + +G + ++ K+ P R MK +ME LIHHFKL+TEG+ VP G Y+ VE
Sbjct: 347 MHQALN--KMPEGEIKVDDAKVAPPKRSEMKMSMESLIHHFKLYTEGYQVPPGATYTAVE 404
Query: 632 HPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEI 691
PKGEFG+YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGTQDIVFGE+
Sbjct: 405 APKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMAKGHMLADVVAIIGTQDIVFGEV 464
Query: 692 DR 693
DR
Sbjct: 465 DR 466
>gi|46202359|ref|ZP_00208487.1| COG0649: NADH:ubiquinone oxidoreductase 49 kD subunit 7
[Magnetospirillum magnetotacticum MS-1]
Length = 392
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 243/415 (58%), Positives = 300/415 (72%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+SY +NFGPQHPAAHGVLRLILE+ GEVV +ADPH+GLLHR TEKL E +TYLQ+ PY
Sbjct: 5 QIQSYTINFGPQHPAAHGVLRLILEMSGEVVDRADPHVGLLHRGTEKLIEHKTYLQATPY 64
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV M EHA+V+A E+LL I IP+RA++IR ++DEI R+LNHL+ + + D+G
Sbjct: 65 FDRLDYVGTMNQEHAFVLATERLLGIDIPMRAKFIRTLYDEIGRILNHLLNVTAFIFDVG 124
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
M LLY F ERE L++ YE V GAR+HA YYRPGGV DLP
Sbjct: 125 GMTPLLYGFEEREKLMEFYERVCGARLHANYYRPGGVAADLPN----------------- 167
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LL+ I ++ FP +D+ ETL TDNRI+KQR+V IG V+ E+AL GFTG
Sbjct: 168 --------GLLEDIAEWCETFPAVLDDIETLATDNRIFKQRVVDIGTVTAEQALDWGFTG 219
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
P LR SG+ WDLRK QPYE+Y+ + FDIP+GKNGD YDRYLVR+ EMR+S KI+KQCI
Sbjct: 220 PNLRASGIAWDLRKAQPYEVYDQMEFDIPVGKNGDGYDRYLVRVLEMRESIKIMKQCIAK 279
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ GPV +NK+T P R MK++ME LIHHFKLFTEGF VP+GE Y+ +E PKGEF
Sbjct: 280 MPG--GPVRIEDNKVTPPKRAEMKTSMESLIHHFKLFTEGFRVPVGETYTAIEAPKGEFA 337
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YL++DG KPYR KIR PG+ HLQ+L M GHM++DVV IG+ DIVFGEIDR
Sbjct: 338 VYLIADGTGKPYRCKIRPPGYVHLQALDMMSKGHMLADVVANIGSIDIVFGEIDR 392
>gi|225543453|ref|NP_001018481.2| NADH dehydrogenase (ubiquinone) Fe-S protein 2 [Danio rerio]
Length = 464
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 245/422 (58%), Positives = 306/422 (72%), Gaps = 28/422 (6%)
Query: 273 KDFPVI-EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRT 331
KD P ++ + +NFGPQHPAAHGVLRL++EL GE V+K DPHIGLLHR TEKL E +T
Sbjct: 70 KDPPAQKDLSNLTINFGPQHPAAHGVLRLVMELSGESVKKCDPHIGLLHRGTEKLIEYKT 129
Query: 332 YLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIG 391
YLQ+LPY DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F E+TR++NH+M I
Sbjct: 130 YLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQAPPRAQWIRVLFGEMTRIMNHIMGIT 189
Query: 392 SHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSII 451
+H+LDIGAM + F ERE L + YE VSGARMHAAY RPGGV++D+P
Sbjct: 190 THALDIGAMTPFFWMFEEREKLFEFYERVSGARMHAAYVRPGGVHQDMPL---------- 239
Query: 452 RNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERA 511
L+D I ++ F IDE E +LT+NRIWK R VGIGV+ E A
Sbjct: 240 ---------------GLMDDIYEWCKNFSIRIDEVEEMLTNNRIWKNRTVGIGVIGAEEA 284
Query: 512 LSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKI 571
L+ GF+G MLRGSG+KWDLRK QPY+ Y+ + FD+ IG NGD YDRYL R+EEMRQS +I
Sbjct: 285 LNYGFSGVMLRGSGIKWDLRKSQPYDKYDEVEFDMAIGTNGDCYDRYLCRVEEMRQSLRI 344
Query: 572 IKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVE 631
+ QC+ + G + ++ KI P R MK++ME LIHHFKL+TEG+ VP G Y+ +E
Sbjct: 345 MHQCLN--KMPPGEIKVDDAKIAPPKRSEMKTSMESLIHHFKLYTEGYQVPPGATYTAIE 402
Query: 632 HPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEI 691
PKGEFG+YLVSDG+++PYR KI++PGFAHL L M GHM++DVV IIGTQDIVFGE+
Sbjct: 403 APKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDRMSQGHMLADVVAIIGTQDIVFGEV 462
Query: 692 DR 693
DR
Sbjct: 463 DR 464
>gi|74325199|ref|YP_316619.1| NADH dehydrogenase subunit 7 [Thalassiosira pseudonana]
gi|74100265|gb|AAZ99426.1| NADH dehydrogenase subunit 7 [Thalassiosira pseudonana]
Length = 398
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 242/411 (58%), Positives = 302/411 (73%), Gaps = 27/411 (6%)
Query: 283 YKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRL 342
+ +NFGPQHPAAHGVLRL+LEL GE+V +ADPHIGLLHR TEKL E + Y+Q+LPY DRL
Sbjct: 15 FTINFGPQHPAAHGVLRLVLELNGEIVNRADPHIGLLHRGTEKLIEYKNYVQALPYFDRL 74
Query: 343 DYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGV 402
DYVSMM EH+Y +AIEKL N KIP RAQYIRV+F EITR+LNHL+ +G H++D+GAM
Sbjct: 75 DYVSMMAQEHSYCLAIEKLFNCKIPERAQYIRVLFAEITRILNHLLAVGCHAMDVGAMTP 134
Query: 403 LLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNE 462
L+AF ERE L++ YE VSGARMHAAY+RPGG+ D+P+
Sbjct: 135 FLWAFEEREKLMEFYERVSGARMHAAYFRPGGLQVDIPK--------------------- 173
Query: 463 NRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLR 522
LLD I F +F + E E +LT+NRIWKQRLV IGVV+ + A GF+G MLR
Sbjct: 174 ----GLLDDIYMFIEQFTLRLTEMEDMLTENRIWKQRLVDIGVVTAKDACQWGFSGVMLR 229
Query: 523 GSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSN 582
GSG+ WDLRK QPYE+Y L FDIP+G NGD YDRYL+R+ EM++S KII+QC+ + +
Sbjct: 230 GSGINWDLRKSQPYEVYEKLEFDIPVGTNGDCYDRYLIRVFEMKESLKIIEQCLNLMPA- 288
Query: 583 KGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLV 642
G V +N+ KI+ P R+ MK +ME LIHHFK++T+G +P E Y E PKGEFG+YL+
Sbjct: 289 -GYVKTNDFKISPPTRVEMKQSMEALIHHFKMYTQGVIIPSNETYIGTEAPKGEFGVYLI 347
Query: 643 SDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
SD N+PYR KI++PGF HLQ+L M GH+I+DVVTIIGTQDIVFGE+DR
Sbjct: 348 SDNTNRPYRCKIKAPGFNHLQALDFMSKGHLIADVVTIIGTQDIVFGEVDR 398
>gi|346471997|gb|AEO35843.1| hypothetical protein [Amblyomma maculatum]
gi|346471999|gb|AEO35844.1| hypothetical protein [Amblyomma maculatum]
Length = 461
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 242/415 (58%), Positives = 307/415 (73%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++ ++NFGPQHPAAHGVLRL+LELEGE V +ADPHIGLLHR TEKL E +TY Q+LPY
Sbjct: 74 QVRNMQINFGPQHPAAHGVLRLVLELEGETVVRADPHIGLLHRGTEKLMEYKTYTQALPY 133
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE Y +A+EKLLNI IP RA+YIRV+F EITR+LNH+M IG+H LDIG
Sbjct: 134 MDRLDYVSMMANEQCYSLAVEKLLNIDIPKRAKYIRVLFGEITRILNHIMAIGTHCLDIG 193
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+ + F ERE L++ YE VSGARMHAAY RPGGV +D+P
Sbjct: 194 GLTPFFWLFEEREKLMEFYERVSGARMHAAYVRPGGVSQDMPL----------------- 236
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L+D I D+ +F + +DE E LLT+NRIWKQR V IGV++ E AL G +G
Sbjct: 237 --------GLMDDIYDWATKFSQRLDEVEDLLTNNRIWKQRTVDIGVITAENALDWGCSG 288
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+KWDLRK QPY+ Y +F++P+G NGD YDRYL R+EEMRQS +II QC+
Sbjct: 289 VMLRGSGIKWDLRKSQPYDSYEDFDFEVPVGLNGDCYDRYLCRMEEMRQSLRIIYQCLNN 348
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV +++NK P+R MK++ME LIHHFKLFTEG+ VP G Y+ VE PKGEFG
Sbjct: 349 MPT--GPVKTDDNKCVPPSREEMKTSMEALIHHFKLFTEGYQVPPGVTYTAVEAPKGEFG 406
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y++SDG+++PYR KI++PGFAHL +L + HM++D+V IIGT D+VFGEIDR
Sbjct: 407 LYMISDGSSRPYRCKIKAPGFAHLSALDFIGKNHMLADIVAIIGTLDVVFGEIDR 461
>gi|225709630|gb|ACO10661.1| NADH dehydrogenase iron-sulfur protein 2, mitochondrial precursor
[Caligus rogercresseyi]
Length = 475
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 236/414 (57%), Positives = 312/414 (75%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+++ ++NFGPQHPAAHGVLRL+L+L+GE+VR+ADPHIGLLHR TEKL E +TY+Q+LPY
Sbjct: 89 VRNIQVNFGPQHPAAHGVLRLVLQLDGELVREADPHIGLLHRGTEKLIEYKTYMQALPYF 148
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSM+CNE AY +A+EKLLNI +P+RA+YIRV+F E+TR+LNHLM IG+H LD+G
Sbjct: 149 DRLDYVSMVCNEQAYSLAVEKLLNIDVPLRAKYIRVLFGELTRILNHLMGIGTHILDLGG 208
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ + F ERE +++ YE SGARMHAAY RPGGV+RD+P
Sbjct: 209 ITPFFWMFEEREKMMEFYERASGARMHAAYVRPGGVHRDIPI------------------ 250
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD I +F ++FP+ +DE E L+T+NRI+ R IGVVS E AL+ GF+G
Sbjct: 251 -------GLLDDIYEFISKFPQRLDEVEDLVTNNRIFVSRTTDIGVVSSEDALNYGFSGV 303
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG+KWDLRK QPY+ Y+L++FD+PIG+ GD YDRY++R+EEMRQS +II+QC+ +
Sbjct: 304 MLRGSGIKWDLRKSQPYDAYDLVDFDVPIGRKGDCYDRYMIRMEEMRQSVRIIQQCLNDM 363
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+G V +++ K P R MKS+ME LIHHFKLFT+G+ VP G Y+ +E PKGEFG+
Sbjct: 364 --PEGEVRTDDAKCIPPTRAEMKSSMEALIHHFKLFTQGYTVPAGSTYTAIEAPKGEFGV 421
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL ++ M ++DVV IIGT D+VFGE+DR
Sbjct: 422 YLVSDGSSRPYRCKIKAPGFAHLAAMDHMSKNGFLADVVAIIGTIDVVFGEVDR 475
>gi|148225797|ref|NP_001089829.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Xenopus laevis]
gi|80479245|gb|AAI08511.1| MGC130896 protein [Xenopus laevis]
Length = 459
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 243/422 (57%), Positives = 307/422 (72%), Gaps = 28/422 (6%)
Query: 273 KDFPVIE-IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRT 331
KD P+ + + + +NFGPQHPAAHGVLRL++EL GE V++ DPHIGLLHR TEKL E +T
Sbjct: 65 KDPPIQKAVSNLTINFGPQHPAAHGVLRLVMELSGESVKRCDPHIGLLHRGTEKLIEYKT 124
Query: 332 YLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIG 391
YLQ+LPY +RLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITR+LNH+M +
Sbjct: 125 YLQALPYFNRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRILNHIMAVT 184
Query: 392 SHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSII 451
H+LDIGAM + F ERE + + YE VSGARMHAAY RPGGV++D+P
Sbjct: 185 CHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYVRPGGVHQDMPL---------- 234
Query: 452 RNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERA 511
L+D I +F F +DE E +LT+NRIWK R V IGVVS E A
Sbjct: 235 ---------------GLMDDIYEFIKNFSIRVDEVEEMLTNNRIWKNRTVDIGVVSAEDA 279
Query: 512 LSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKI 571
L+ GF+G MLRGSG++WDLRK QPY++Y+ + FD+PIG GD YDRYL R+EEMRQS +I
Sbjct: 280 LNYGFSGVMLRGSGIQWDLRKSQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEEMRQSLRI 339
Query: 572 IKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVE 631
I QC+ + +G + ++ K++ P R MK +ME LIHHFKL+TEG+ VP G Y+ +E
Sbjct: 340 ILQCLN--KMPEGEIKVDDAKVSPPKRSEMKHSMESLIHHFKLYTEGYQVPPGTTYTAIE 397
Query: 632 HPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEI 691
PKGEFG+YLVSDG+ +PYR KI++PGFAHL L M GHM++DVV IIGTQDIVFGE+
Sbjct: 398 APKGEFGVYLVSDGSTRPYRCKIKAPGFAHLAGLDMMSQGHMLADVVAIIGTQDIVFGEV 457
Query: 692 DR 693
DR
Sbjct: 458 DR 459
>gi|388880500|dbj|BAM16490.1| NADH dehydrogenase subunit 7 (mitochondrion) [Leucocryptos marina]
Length = 395
Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust.
Identities = 244/417 (58%), Positives = 304/417 (72%), Gaps = 27/417 (6%)
Query: 277 VIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSL 336
V ++K++ +NFGPQHPAAHGVLRL+LEL+GE + ADPHIGLLHR TEKL E + YLQ L
Sbjct: 6 VGKLKNFTINFGPQHPAAHGVLRLVLELDGETITYADPHIGLLHRGTEKLIESKNYLQGL 65
Query: 337 PYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLD 396
PY DRLDYVSMM EH Y +AIE L+ ++IP RA YIRV+F EITR+LNHL+ + H+LD
Sbjct: 66 PYFDRLDYVSMMVQEHGYSLAIESLIGLEIPERASYIRVLFSEITRILNHLLAVSCHALD 125
Query: 397 IGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKA 456
+GA+ LL+AF ERE L++ YE VSGARMHA+Y RPGGV DLP
Sbjct: 126 VGALTPLLWAFEEREKLMEFYERVSGARMHASYIRPGGVSLDLPI--------------- 170
Query: 457 TKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGF 516
LLD I F +F IDE E LLT NRIWKQRLV IG V E A+ GF
Sbjct: 171 ----------GLLDDIYSFVLQFSARIDEIEELLTHNRIWKQRLVDIGTVPLEVAMDWGF 220
Query: 517 TGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCI 576
TG MLRGSG+ WDLRK +PYE+Y+ L+F +P+G GD YDRYL+R++EMR+S II QC+
Sbjct: 221 TGVMLRGSGIDWDLRKDRPYEVYDKLSFKVPVGTAGDCYDRYLIRVQEMRESLGIILQCL 280
Query: 577 KWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
+ +GP+ S ++K +P+R +MK++ME LIHHFK +TEGF + G++Y VE PKGE
Sbjct: 281 NDM--PEGPIKSTDSKYVAPSRFSMKNDMESLIHHFKFYTEGFNITSGQVYQAVEAPKGE 338
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG++LVSDG+ +PYR KIR+PGFAHLQ L M GHM++DVVTIIGTQDIVFGE+DR
Sbjct: 339 FGVFLVSDGSARPYRCKIRAPGFAHLQGLDVMAQGHMLADVVTIIGTQDIVFGEVDR 395
>gi|373450734|ref|ZP_09542701.1| NADH-quinone oxidoreductase chain D [Wolbachia pipientis wAlbB]
gi|371932056|emb|CCE77714.1| NADH-quinone oxidoreductase chain D [Wolbachia pipientis wAlbB]
Length = 390
Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust.
Identities = 239/415 (57%), Positives = 308/415 (74%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++K+ LNFGPQHPAAHGVLRL+LE++GEV+ +ADPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 3 DLKTMMLNFGPQHPAAHGVLRLVLEMDGEVIERADPHIGLLHRGTEKLIEHKTYLQALPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVS M EHAY + +EKLL ++PIRA+Y+RV+F E+TR+LNHL+ I S +LD+G
Sbjct: 63 FDRLDYVSPMSQEHAYSLCVEKLLQCEVPIRAKYLRVLFCELTRILNHLLNISSQALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM LL+ F ERE +L+ YE SGAR HAAY RPGG+ D+PE
Sbjct: 123 AMTPLLWLFEEREKILEFYERASGARFHAAYIRPGGLAADIPE----------------- 165
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L++ I F +FPK ID+ + LLT+NRIWKQR V I +S + AL GF+G
Sbjct: 166 --------GLIEDIAKFIAQFPKYIDDVDELLTENRIWKQRTVEISKISIKEALDWGFSG 217
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLR +G+ WDLRK QPYEIY+ L+FDIPIG+NGD YDRYLVR+ E+RQS ++KQCI+
Sbjct: 218 PMLRAAGLAWDLRKSQPYEIYDQLDFDIPIGQNGDCYDRYLVRMAEIRQSISLVKQCIE- 276
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ +GP+ + + KI+ P R M+ +ME +IHHFKL++EG++VP GE Y VE PKGEFG
Sbjct: 277 -KIPEGPIKTEDRKISPPPREEMQESMEAMIHHFKLYSEGYHVPEGEAYVAVEAPKGEFG 335
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDG N+PYR +IR+PGFAHLQ+L M GHM++D+ IIG+ DIVFGEIDR
Sbjct: 336 VYIVSDGTNRPYRCRIRAPGFAHLQALDFMAKGHMLADIAAIIGSLDIVFGEIDR 390
>gi|296229450|ref|XP_002760241.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Callithrix jacchus]
Length = 463
Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust.
Identities = 246/414 (59%), Positives = 309/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+K+ KLNFGPQHPAAHGVLRL++EL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 77 VKNMKLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 136
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITRL+NH+M + +H+LDIGA
Sbjct: 137 DRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLMNHIMAVTTHALDIGA 196
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 197 MTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPL------------------ 238
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I +F+ F +DE E LLT+NRIW+ R V IGV++ E AL+ GF+G
Sbjct: 239 -------GLMDDIYEFSKNFSLRLDELEELLTNNRIWRNRTVDIGVITAEEALNYGFSGV 291
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ + FD+PIG +GD YDRYL R+EEMRQS +II QC+
Sbjct: 292 MLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSHGDCYDRYLCRVEEMRQSLRIIVQCLN-- 349
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 350 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 409
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL L M GHM++DVV IIGTQDIVFGEIDR
Sbjct: 410 YLVSDGSSRPYRCKIKAPGFAHLAGLDRMSKGHMLADVVAIIGTQDIVFGEIDR 463
>gi|195469361|ref|XP_002099606.1| GE14510 [Drosophila yakuba]
gi|194185707|gb|EDW99318.1| GE14510 [Drosophila yakuba]
Length = 468
Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust.
Identities = 235/414 (56%), Positives = 308/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+++ LNFGPQHPAAHGVLRL+LEL+GE V +ADPHIGLLHR TEKL E +TY Q+LPY
Sbjct: 82 VRNLTLNFGPQHPAAHGVLRLVLELDGETVMRADPHIGLLHRGTEKLIEYKTYTQALPYF 141
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE Y +A+EKLLNI +P+RA+YIR +F EITR+LNH+M +G+H+LD+GA
Sbjct: 142 DRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRILNHIMAVGTHALDVGA 201
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ + F ERE +++ YE VSGARMHAAY RPGGV D+P
Sbjct: 202 LTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPI------------------ 243
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I +F +F + +DE E +LT NRIW QR IG+V+ E AL+ GF+G
Sbjct: 244 -------GLMDDIYEFALKFAERLDEVEDVLTTNRIWVQRTEDIGIVTAEEALNYGFSGV 296
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG+KWDLRK+QPY+ Y+L++FD+PIG GD YDRYL R+EEMRQS +II QC+ +
Sbjct: 297 MLRGSGIKWDLRKQQPYDAYHLVDFDVPIGTKGDCYDRYLCRVEEMRQSLRIIDQCLNQM 356
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + +++ K+ P+R MK++ME LIHHFKLFT+G+ VP G Y+ +E PKGEFG+
Sbjct: 357 PA--GEIKTDDAKVAPPSRSEMKTSMEALIHHFKLFTQGYQVPPGATYTAIEAPKGEFGV 414
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YL+SDG+++PYR KI++PGFAHL +L ++ HM++DVV IIGT D+VFGEIDR
Sbjct: 415 YLISDGSSRPYRCKIKAPGFAHLAALEKIGKQHMLADVVAIIGTLDVVFGEIDR 468
>gi|158289654|ref|XP_311336.3| AGAP000794-PA [Anopheles gambiae str. PEST]
gi|347964516|ref|XP_003437099.1| AGAP000794-PB [Anopheles gambiae str. PEST]
gi|347964518|ref|XP_003437100.1| AGAP000794-PC [Anopheles gambiae str. PEST]
gi|157018621|gb|EAA06952.3| AGAP000794-PA [Anopheles gambiae str. PEST]
gi|333467568|gb|EGK96602.1| AGAP000794-PB [Anopheles gambiae str. PEST]
gi|333467569|gb|EGK96603.1| AGAP000794-PC [Anopheles gambiae str. PEST]
Length = 468
Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust.
Identities = 245/418 (58%), Positives = 309/418 (73%), Gaps = 28/418 (6%)
Query: 276 PVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQS 335
PV + LNFGPQHPAAHGVLRL+LEL+GE V +ADPHIGLLHR T KL E +TY Q+
Sbjct: 79 PVEKTVRNSLNFGPQHPAAHGVLRLVLELDGETVMRADPHIGLLHRGT-KLIEYKTYTQA 137
Query: 336 LPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSL 395
LPY DRLDYVSMMCNE Y +A+EKLLNI IP+RA+YIRV+F EITR+LNH+M +G+H+L
Sbjct: 138 LPYFDRLDYVSMMCNEQCYSLAVEKLLNIDIPLRAKYIRVLFAEITRILNHIMAVGTHAL 197
Query: 396 DIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNK 455
D+GA+ + F ERE +++ YE VSGARMHAAY RPGGV +DLP
Sbjct: 198 DVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSQDLPL-------------- 243
Query: 456 ATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMG 515
LLD I +F ++F + +DE E +LT NRIW QR V IGVVS E AL+ G
Sbjct: 244 -----------GLLDDIYEFASKFGERLDEVEDVLTTNRIWVQRTVDIGVVSAEDALNYG 292
Query: 516 FTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQC 575
F+G MLRGSG+KWDLRK QPY+ Y+L+ FD+PIG GD YDRYL R+EEMRQS +II QC
Sbjct: 293 FSGVMLRGSGIKWDLRKSQPYDAYDLVEFDVPIGTKGDCYDRYLCRVEEMRQSLRIIDQC 352
Query: 576 IKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
+ + + G + +++ K+T P+R MK +ME LIHHFKLFT+G+ VP G Y+ VE PKG
Sbjct: 353 LNQMPA--GEIKTDDAKLTPPSRGEMKHSMEALIHHFKLFTQGYQVPPGATYTAVEAPKG 410
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFG+Y+VSDG+++PYR KI++PGFAHL +L ++ HM++DVV IIGT D+VFGEIDR
Sbjct: 411 EFGLYVVSDGSSRPYRCKIKAPGFAHLAALDKIGRHHMLADVVAIIGTLDVVFGEIDR 468
>gi|307183938|gb|EFN70526.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Camponotus floridanus]
Length = 470
Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust.
Identities = 246/414 (59%), Positives = 308/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
I++ K+NFGPQHPAAHGVLRLILEL+GE+V ADPHIGLLHR TEKL E +TY+Q+LPY
Sbjct: 84 IENIKINFGPQHPAAHGVLRLILELDGEIVVSADPHIGLLHRGTEKLIEYKTYMQALPYF 143
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE + +AIEKLLNI +P+RA+YIRV+F EITR+LNH+M IG+H+LDIGA
Sbjct: 144 DRLDYVSMMCNEQCFSLAIEKLLNIDVPLRAKYIRVLFAEITRILNHIMGIGTHALDIGA 203
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ + F ERE L++ YE VSGARMHAAY RPGGV DLP
Sbjct: 204 LTPFFWMFEEREKLMEFYERVSGARMHAAYIRPGGVSLDLPL------------------ 245
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I ++ +++ IDE E LLT+NRIW+QR + IGVVS E AL+ GF+G
Sbjct: 246 -------GLMDDIYNWASKYSGIIDEIEDLLTENRIWRQRTIDIGVVSAEDALNWGFSGV 298
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG+KWDLRK PY+ Y+L++FD+P+G NGD YDRYL RI+EMR+S +II QC+ +
Sbjct: 299 MLRGSGIKWDLRKVAPYDAYDLIDFDVPVGTNGDCYDRYLCRIQEMRESLRIIHQCLNNM 358
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G V ++ KI P R MK++ME LIHHFKLFT+GF VP G Y+ +E PKGEFG+
Sbjct: 359 PA--GEVRCDDAKIVPPRREEMKTSMEALIHHFKLFTQGFQVPPGATYTAIEAPKGEFGV 416
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG++KPYR KI++PGFAHL L M H ++D+V IIGT D+VFGEIDR
Sbjct: 417 YLVSDGSSKPYRCKIKAPGFAHLAGLQYMGPKHFLADIVAIIGTLDVVFGEIDR 470
>gi|332373630|gb|AEE61956.1| unknown [Dendroctonus ponderosae]
Length = 461
Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust.
Identities = 256/485 (52%), Positives = 334/485 (68%), Gaps = 38/485 (7%)
Query: 212 LRVRVFAENNELPRLHSITSLWSSANWY-EREAFDLFG--IFFDGHDDLRRLLTDYGFVG 268
L R+F +N LH TS ++A WY + E F+ F + + L +
Sbjct: 12 LPSRLFLKNGA-ALLH--TSSQTNAKWYPDAEYFEQFKGPVMYPDETTKHWALPGWHNEK 68
Query: 269 HPFRKDFPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAE 328
P K E+K+ +NFGPQHPAAHGVLRL+LEL+GE+VR++DPHIGLLHR TEKL E
Sbjct: 69 APVEK-----EVKNVTINFGPQHPAAHGVLRLVLELDGEIVRRSDPHIGLLHRGTEKLIE 123
Query: 329 QRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLM 388
+TY Q+LPY DRLDYVSMMCNE + +A+EKLLNI +PIRA+YIRV+F E+TR+LNH+M
Sbjct: 124 YKTYTQALPYFDRLDYVSMMCNEQCFSLAVEKLLNIDVPIRAKYIRVLFAELTRILNHIM 183
Query: 389 WIGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKS 448
I +H+LDIGA+ + F ERE +++ YE VSGARMHAAY RPGGV D+P
Sbjct: 184 GICTHALDIGALTPFFWLFEEREKMMEFYERVSGARMHAAYVRPGGVALDMPL------- 236
Query: 449 SIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSP 508
L+D I +F ++F + +DE E LLT NR+W QR IG+V+
Sbjct: 237 ------------------GLMDDIFEFASKFNERLDEVEDLLTSNRLWVQRTEDIGIVTA 278
Query: 509 ERALSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQS 568
E AL+ GF+G MLRGSG+KWDLRK QPY+ Y+ + FDIPIG GD YDRYL R+EEMRQS
Sbjct: 279 EDALNYGFSGVMLRGSGIKWDLRKTQPYDAYDKVEFDIPIGTKGDCYDRYLCRLEEMRQS 338
Query: 569 NKIIKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYS 628
+II QC+ + G + +++ K++ P+R MK++ME LIHHFKLFT+G+ VP G Y+
Sbjct: 339 LRIIHQCLNQM--PPGEIKTDDAKVSPPSRGEMKTSMEALIHHFKLFTQGYQVPPGSTYT 396
Query: 629 CVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVF 688
VE PKGEFG+YLVSDG +KPYR KI++PGFAHL +L ++ HM++D+V IIGT DIVF
Sbjct: 397 AVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALDKVGKNHMLADIVAIIGTLDIVF 456
Query: 689 GEIDR 693
GE+DR
Sbjct: 457 GEVDR 461
>gi|11466310|ref|NP_051138.1| NADH dehydrogenase subunit 7 [Cafeteria roenbergensis]
gi|11134161|sp|Q9TAJ7.1|NDUS2_CAFRO RecName: Full=NADH-ubiquinone oxidoreductase 49 kDa subunit;
AltName: Full=NADH dehydrogenase subunit 7
gi|6180092|gb|AAF05789.1|AF193903_12 NADH dehydrogenase subunit 7 [Cafeteria roenbergensis]
Length = 398
Score = 503 bits (1296), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/415 (58%), Positives = 308/415 (74%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK + LNFGPQHPAAHGVLRLILEL GE ++ ADPHIGLLHR TEKL E R YLQ+LPY
Sbjct: 11 EIKDFTLNFGPQHPAAHGVLRLILELNGETIKNADPHIGLLHRGTEKLIENRNYLQALPY 70
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM EHAY +A+E+L I IP RAQ+IRV+F EITR+LNHL+ IG HS+D+G
Sbjct: 71 FDRLDYVSMMVQEHAYSLAVERLYGINIPQRAQWIRVLFSEITRILNHLLAIGCHSMDVG 130
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM LL+ F ERE L++ YE VSGARMHA+Y RPGGV +DLP S + +
Sbjct: 131 AMTPLLWGFEEREKLMEFYERVSGARMHASYIRPGGVAQDLP-------SGFVED----- 178
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+ FI DF+ R +DE E LLT+NRIWKQRLV +G+V+ ++A+ GF+G
Sbjct: 179 ---------VYSFILDFSVR----LDEIEELLTNNRIWKQRLVNVGIVTAKQAIQNGFSG 225
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
+LR +G+ WDLR+ QPYEIY+ + F IP+G GD YDRYL+R++EMRQS +I+ C+K+
Sbjct: 226 VLLRSTGIPWDLRRSQPYEIYDKVPFRIPVGTRGDCYDRYLIRMQEMRQSLRIMMACLKY 285
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L G + S++ K P R MK++ME +IHHFK FTEGF VP G+ Y+ VE PKGE G
Sbjct: 286 LPG--GSIKSDDKKFVPPLRWEMKNSMESVIHHFKYFTEGFKVPAGQTYAAVEAPKGEMG 343
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++L+SDG+N+P+R KI++PGF HLQ+L EM HMI+DVVTIIGTQDIVFGE+DR
Sbjct: 344 VFLISDGSNQPFRCKIKAPGFFHLQNLPEMTKHHMIADVVTIIGTQDIVFGEVDR 398
>gi|189183821|ref|YP_001937606.1| NADH dehydrogenase subunit D [Orientia tsutsugamushi str. Ikeda]
gi|218534441|sp|B3CSH1.1|NUOD_ORITI RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|189180592|dbj|BAG40372.1| NADH dehydrogenase I chain D [Orientia tsutsugamushi str. Ikeda]
Length = 396
Score = 503 bits (1296), Expect = e-139, Method: Compositional matrix adjust.
Identities = 241/413 (58%), Positives = 305/413 (73%), Gaps = 27/413 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
K +KLN GPQHPA HGVLRLILE++GE+V +ADPHIGLLHR TEKL E +TYLQ++PY D
Sbjct: 11 KKFKLNLGPQHPATHGVLRLILEMDGEIVERADPHIGLLHRGTEKLIEYKTYLQAIPYFD 70
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYVS MC EHA+ +AIE LL ++P+RAQYIRVMF E+TR+LNH + I + +LD+GA
Sbjct: 71 RLDYVSPMCQEHAFALAIEHLLKCEVPLRAQYIRVMFSELTRILNHTLNIATQALDVGAT 130
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
LL+ F ERE +++ YE VSG+R+HA Y+RPGGV +DLPE
Sbjct: 131 TPLLWMFEEREKIMEFYERVSGSRLHANYFRPGGVSQDLPE------------------- 171
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
L++ I DF +FP I + ETLLTDNRIWKQR V IG+VS ++A+ GF+G M
Sbjct: 172 ------GLIENIADFCEQFPCKIADLETLLTDNRIWKQRTVDIGIVSKQQAMDWGFSGVM 225
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
LRGSG+ WDLRK QPY+ Y L+FD+ IGKNGD YDRYL+RIEEM QS KIIKQCI+ +
Sbjct: 226 LRGSGIAWDLRKSQPYDQYANLDFDVAIGKNGDCYDRYLIRIEEMYQSIKIIKQCIQKMP 285
Query: 581 SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIY 640
+ G + + + I+ P R +K +ME LI+HFKL++EG+ VP GE+Y+ VE PKGEFG+Y
Sbjct: 286 A--GEIRTQDPSISPPKRSEIKKSMEALINHFKLYSEGYNVPAGEVYAAVEAPKGEFGVY 343
Query: 641 LVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
L SDG N+PYR +I++PGFAHLQ L M GH +SD++TII T DIVFGEIDR
Sbjct: 344 LYSDGTNRPYRCRIKAPGFAHLQGLDFMARGHSLSDIITIIATLDIVFGEIDR 396
>gi|297662927|ref|XP_002809936.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial isoform 1 [Pongo abelii]
gi|395729512|ref|XP_003775560.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial isoform 2 [Pongo abelii]
gi|115502343|sp|Q0MQG3.1|NDUS2_PONPY RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
2, mitochondrial; AltName: Full=Complex I-49kD;
Short=CI-49kD; AltName: Full=NADH-ubiquinone
oxidoreductase 49 kDa subunit; Flags: Precursor
gi|111661934|gb|ABH12180.1| mitochondrial complex I subunit NDUFS2 [Pongo pygmaeus]
Length = 463
Score = 503 bits (1295), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/414 (58%), Positives = 308/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+K+ LNFGPQHPAAHGVLRL++EL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 77 VKNMTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 136
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITRLLNH+M + +H+LD+GA
Sbjct: 137 DRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGA 196
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 197 MTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPL------------------ 238
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I F+ F +DE E LLT+NRIW+ R + IGVV+ E AL+ GF+G
Sbjct: 239 -------GLMDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGV 291
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ + FD+P+G GD YDRYL R+EEMRQS +II QC+
Sbjct: 292 MLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLN-- 349
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 350 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 409
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL SL +M GHM++DVV IIGTQDIVFGE+DR
Sbjct: 410 YLVSDGSSRPYRCKIKAPGFAHLASLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
>gi|410906711|ref|XP_003966835.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial-like [Takifugu rubripes]
Length = 466
Score = 503 bits (1295), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/422 (57%), Positives = 306/422 (72%), Gaps = 28/422 (6%)
Query: 273 KDFPV-IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRT 331
KD P ++ + LNFGPQHPAAHGVLRL++EL GE V+K DPHIGLLHR TEKL E +T
Sbjct: 72 KDPPADKDVSNLTLNFGPQHPAAHGVLRLVMELSGESVKKCDPHIGLLHRGTEKLIEYKT 131
Query: 332 YLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIG 391
YLQ+LPY DRLDYVSMMCNE AY +A+EKLLN++ P RAQ+IRV+F E+TR+LNH+M +
Sbjct: 132 YLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNVQAPPRAQWIRVLFGELTRILNHIMAVT 191
Query: 392 SHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSII 451
+H+LDIGAM + F ERE + + YE VSGARMHAAY RPGGV++D+P
Sbjct: 192 THALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYVRPGGVHQDMPL---------- 241
Query: 452 RNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERA 511
L+D I ++ F IDE E +LT+NRIWK R + IGVV+ E A
Sbjct: 242 ---------------GLMDDIYEWCKNFSIRIDEVEEMLTNNRIWKNRTLDIGVVTSEEA 286
Query: 512 LSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKI 571
L+ GF+G MLRGSG+KWDLRK QPY+ Y + FDIPIG NGD YDRYL R+EEMRQS +I
Sbjct: 287 LNYGFSGVMLRGSGIKWDLRKSQPYDKYGEVEFDIPIGSNGDCYDRYLCRVEEMRQSLRI 346
Query: 572 IKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVE 631
+ Q + + +G + ++ K+ P R MK +ME LIHHFKL+TEG+ VP G Y+ VE
Sbjct: 347 MHQALN--KMPEGEIKVDDAKVAPPKRSEMKMSMESLIHHFKLYTEGYQVPPGATYTAVE 404
Query: 632 HPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEI 691
PKGEFG+YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGTQDIVFGE+
Sbjct: 405 APKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSQGHMLADVVAIIGTQDIVFGEV 464
Query: 692 DR 693
DR
Sbjct: 465 DR 466
>gi|114051447|ref|NP_001040366.1| NADH dehydrogenase-ubiquinone Fe-S protein 2 [Bombyx mori]
gi|95102646|gb|ABF51261.1| NADH dehydrogenase-ubiquinone Fe-S protein 2 precursor [Bombyx
mori]
Length = 466
Score = 503 bits (1295), Expect = e-139, Method: Compositional matrix adjust.
Identities = 241/415 (58%), Positives = 307/415 (73%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++ LNFGPQHPAAHGVLRL+LEL+GE VR ADPHIGLLHR TEKL E +TY Q+LPY
Sbjct: 79 KVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPY 138
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMMCNE Y +A+EKLLNI +P+RA+YIR +F EITRLLNH+M +G+H+LD+G
Sbjct: 139 FDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVG 198
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ + F ERE +++ YE VSGARMHAAY RPGGV D+P
Sbjct: 199 ALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPL----------------- 241
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L+D I +F+++F + IDE E +LT NRIW QR IGVV+ + AL+ GF+G
Sbjct: 242 --------GLMDDIYEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSG 293
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+KWDLRK QPY+ Y + FD+PIG +GD YDRYL R+EEMRQS +II+QC+
Sbjct: 294 VMLRGSGIKWDLRKTQPYDAYPFVEFDVPIGTHGDCYDRYLCRVEEMRQSLRIIEQCLND 353
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ G V +++ K+T P+R MK++ME LIHHFKLFT+G+ VP G Y+ VE PKGEFG
Sbjct: 354 M--PPGEVKTDDAKLTPPSREEMKTSMEALIHHFKLFTQGYQVPPGSTYTAVEAPKGEFG 411
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDG +KPYR KI++PGFAHL +L ++ M++D+V IIGT D+VFGEIDR
Sbjct: 412 IYLVSDGGSKPYRCKIKAPGFAHLAALEKIGRNSMLADIVAIIGTLDVVFGEIDR 466
>gi|312116346|ref|YP_004013942.1| NADH dehydrogenase I subunit D [Rhodomicrobium vannielii ATCC
17100]
gi|311221475|gb|ADP72843.1| NADH dehydrogenase I, D subunit [Rhodomicrobium vannielii ATCC
17100]
Length = 415
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 247/417 (59%), Positives = 310/417 (74%), Gaps = 27/417 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
E +++ +NFGPQHPAAHGVLRLILEL+GEVV + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 24 ENRNFTINFGPQHPAAHGVLRLILELDGEVVHRVDPHIGLLHRGTEKLIEHKTYLQAIPY 83
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +AIEKLL + PIR Q IRV+F EI R+LNHL+ + + +LD+G
Sbjct: 84 FDRLDYVAPMNQEHAFCLAIEKLLGVTPPIRGQLIRVLFSEIGRILNHLLNVTTFALDLG 143
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE SGAR+HA Y+RPGGV++DLP+
Sbjct: 144 ALTPPLWGFEEREKLMVFYERASGARLHANYFRPGGVHQDLPQ----------------- 186
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+L+D IE + + F K + + +TLLTDNRI+KQR V IGVVS E A++ GFTG
Sbjct: 187 --------ALIDDIEAWCDSFLKVLADLDTLLTDNRIFKQRTVDIGVVSLEDAMAWGFTG 238
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG WDLRK QPYE Y L+FDIPIGKNGD++DRYL+R+EEMRQS +I+KQCI+
Sbjct: 239 TMIRGSGAAWDLRKSQPYECYADLDFDIPIGKNGDNWDRYLIRMEEMRQSIRIMKQCIER 298
Query: 579 LRS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
L S KGPVI NNK+T P R MK +ME LIHHFKL+TEGF VP GE+Y+ VE PKGE
Sbjct: 299 LNSPAGKGPVILPNNKVTPPRREEMKRSMEALIHHFKLYTEGFRVPEGEVYAAVEAPKGE 358
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YLV+DG N+PYR KIR+PGF HL ++ + GHM++DV I+G+ DIVFGEIDR
Sbjct: 359 FGVYLVADGTNRPYRCKIRAPGFPHLAAMDFLCKGHMLADVAAILGSIDIVFGEIDR 415
>gi|289742785|gb|ADD20140.1| NADH-ubiquinone oxidoreductase NDUFS2/49 kDa subunit [Glossina
morsitans morsitans]
Length = 461
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 237/415 (57%), Positives = 307/415 (73%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I++ +NFGPQHPAAHGVLRL++EL+GE V + DPHIGLLHR TEKL E +TY Q+LPY
Sbjct: 74 KIRNLTINFGPQHPAAHGVLRLVMELDGETVTRCDPHIGLLHRGTEKLIEYKTYTQALPY 133
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMMCNE Y MA+EKLLNI++P+RA+YIR +F E+TRLLNH+M IG+H+LD+G
Sbjct: 134 FDRLDYVSMMCNEQCYSMAVEKLLNIEVPLRAKYIRTLFAELTRLLNHIMAIGTHALDVG 193
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ + F ERE +++ YE SGARMHAAY RPGGV D+P
Sbjct: 194 ALTPFFWLFEEREKMMEFYERASGARMHAAYIRPGGVSLDMPI----------------- 236
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L+D I +F ++F + +DE E +LT NRIW QR V IG V+ E AL+ GF+G
Sbjct: 237 --------GLMDDIYEFASKFGERLDEVEDVLTTNRIWVQRTVDIGTVTAEEALNYGFSG 288
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+KWDLRK+QPY+ Y+L+ FDIPIG GD YDRYL R+EEMRQS +II QC+
Sbjct: 289 VMLRGSGIKWDLRKQQPYDAYDLVEFDIPIGTKGDCYDRYLCRLEEMRQSLRIIDQCLNQ 348
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ +G + +++ KI P+R MK +ME LIHHFKLF++GF VP G Y+ +E PKGEFG
Sbjct: 349 M--PEGEIKTDDAKIAPPSRAEMKVSMEALIHHFKLFSQGFQVPPGTTYTAIEAPKGEFG 406
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLV+DG+++PYR KI++PGFAHL +L+ + HM++DVV IIGT D+VFGEIDR
Sbjct: 407 VYLVADGSSRPYRCKIKAPGFAHLAALNHVGRQHMLADVVAIIGTLDVVFGEIDR 461
>gi|442757571|gb|JAA70944.1| Putative nadh:ubiquinone oxidoreductase ndufs2/49 kda subunit
[Ixodes ricinus]
Length = 462
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 246/430 (57%), Positives = 310/430 (72%), Gaps = 29/430 (6%)
Query: 266 FVGHPFRKDFPVIE--IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRAT 323
FV P ++ P IE +++ ++NFGPQHPAAHGVLRL+LELEGE V +ADPHIGLLHR T
Sbjct: 60 FVKLPRNRNIPPIEKKVRNMQINFGPQHPAAHGVLRLVLELEGETVVRADPHIGLLHRGT 119
Query: 324 EKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRL 383
EKL E +TY Q+LPYMDRLDYVSMM NE Y +A+EKLLNI IP RA+YIRV+F EITR+
Sbjct: 120 EKLMEYKTYTQALPYMDRLDYVSMMANEQCYSLAVEKLLNIDIPKRAKYIRVLFGEITRI 179
Query: 384 LNHLMWIGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIM 443
LNH+M +G+H LDIG + + F ERE L++ YE VSGARMHAAY RPGGV +D+P
Sbjct: 180 LNHIMAVGTHCLDIGGLTPFFWLFEEREKLMEFYERVSGARMHAAYVRPGGVAQDMPL-- 237
Query: 444 PQYKSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGI 503
LLD I D+ +F + +DE E LLT NRIWKQR + I
Sbjct: 238 -----------------------GLLDDIYDWAQKFSQRLDEVEDLLTGNRIWKQRTIDI 274
Query: 504 GVVSPERALSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIE 563
GV++ E AL G +G MLRGSG+KWDLRK QPY+ Y +F++P+G GD YDRYL R+E
Sbjct: 275 GVITAEDALDWGCSGVMLRGSGIKWDLRKTQPYDSYEDFDFEVPVGLKGDCYDRYLCRME 334
Query: 564 EMRQSNKIIKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPL 623
EMRQS II QC+ + GPV +++NK P+R MK++ME LIHHFKLFTEG+ VP
Sbjct: 335 EMRQSLLIIHQCLN--KMPPGPVRTDDNKCVPPSREEMKTSMEALIHHFKLFTEGYQVPP 392
Query: 624 GEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGT 683
G Y+ VE PKGEFG+Y++SDG+++PYR KI++PGFAHL +L + HM++D+V IIGT
Sbjct: 393 GATYTAVEAPKGEFGLYMISDGSSRPYRCKIKAPGFAHLSALDFIGRNHMLADIVAIIGT 452
Query: 684 QDIVFGEIDR 693
D+VFGEIDR
Sbjct: 453 LDVVFGEIDR 462
>gi|229366982|gb|ACQ58471.1| NADH dehydrogenase iron-sulfur protein 2, mitochondrial precursor
[Anoplopoma fimbria]
Length = 467
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 245/422 (58%), Positives = 307/422 (72%), Gaps = 28/422 (6%)
Query: 273 KDFPV-IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRT 331
KD P ++ + +NFGPQHPAAHGVLRL+LEL GE V+K DPHIGLLHR TEKL E +T
Sbjct: 73 KDPPAEKDVSNLTINFGPQHPAAHGVLRLVLELSGESVKKCDPHIGLLHRGTEKLIEYKT 132
Query: 332 YLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIG 391
YLQ+LPY DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV++ E+TR+LNH+M I
Sbjct: 133 YLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQAPPRAQWIRVLYGEMTRILNHIMAIT 192
Query: 392 SHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSII 451
+H+LDIGAM + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 193 THALDIGAMTPFFWLFEEREKMFEFYERVSGARMHAAYVRPGGVHQDLPL---------- 242
Query: 452 RNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERA 511
L+D I ++ F IDE E +LT+NRIWK R V IGVV+ E A
Sbjct: 243 ---------------GLMDDIYEWCKNFSIRIDEVEEMLTNNRIWKNRTVDIGVVTSEEA 287
Query: 512 LSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKI 571
L+ GF+G MLRGSG+KWDLRK QPY+ Y+ + FD+PIG GD YDRYL R+EEMRQS +I
Sbjct: 288 LNYGFSGVMLRGSGIKWDLRKSQPYDKYDEVEFDVPIGIKGDCYDRYLCRVEEMRQSLRI 347
Query: 572 IKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVE 631
+ Q + + +G + ++ K+ P R MK++ME LIHHFKL+TEG+ VP G Y+ VE
Sbjct: 348 MLQSLN--KMPEGEIKVDDAKVAPPKRSEMKTSMESLIHHFKLYTEGYQVPPGATYTAVE 405
Query: 632 HPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEI 691
PKGEFG+YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGTQDIVFGE+
Sbjct: 406 APKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMAKGHMLADVVAIIGTQDIVFGEV 465
Query: 692 DR 693
DR
Sbjct: 466 DR 467
>gi|15604222|ref|NP_220738.1| NADH dehydrogenase subunit D [Rickettsia prowazekii str. Madrid E]
gi|386082199|ref|YP_005998776.1| NADH dehydrogenase I subunit D [Rickettsia prowazekii str. Rp22]
gi|6647680|sp|Q9ZDH4.1|NUOD_RICPR RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|3860914|emb|CAA14814.1| NADH DEHYDROGENASE I CHAIN D (nuoD) [Rickettsia prowazekii str.
Madrid E]
gi|292571963|gb|ADE29878.1| NADH dehydrogenase I chain D [Rickettsia prowazekii str. Rp22]
Length = 389
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 242/413 (58%), Positives = 304/413 (73%), Gaps = 27/413 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
K+ LN GPQHPA HGVLRLILE++GEVV ADPHIGLLHR TEKL E +TYLQ++PY D
Sbjct: 4 KTITLNLGPQHPATHGVLRLILEMDGEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFD 63
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYVS MC EHA+ +A+E LL +P RAQ+IRV+F E+TR+LNH + IGS +LDIGA
Sbjct: 64 RLDYVSPMCQEHAFALAVESLLECSVPRRAQFIRVLFSELTRILNHTLNIGSQALDIGAT 123
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
LL+ F ERE +++ YE VSG+RMH+ Y+RPGGV DLPE
Sbjct: 124 TPLLWLFEEREKIMEFYERVSGSRMHSNYFRPGGVAEDLPE------------------- 164
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
+LL+ I F +FP +++ E LL +NR+WKQRLV IGVVS + A+ GF+GPM
Sbjct: 165 ------NLLEDINKFIEQFPSKLNDIENLLNENRLWKQRLVDIGVVSQKDAMDWGFSGPM 218
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
LRGSG+ WDLRK PY++Y+ ++F++PIGKNGD YDRYLVRI EM +S KIIKQCI ++
Sbjct: 219 LRGSGIAWDLRKSNPYDVYDEMDFEVPIGKNGDCYDRYLVRILEMYESIKIIKQCI--VK 276
Query: 581 SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIY 640
KG V +++ K+T P R MK +ME +IHHFKL+TEG+ VP+GE Y VE PKGEFG+Y
Sbjct: 277 MPKGQVKTDDPKLTPPTRGKMKESMEAMIHHFKLYTEGYDVPIGETYKAVEAPKGEFGVY 336
Query: 641 LVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
L S G NKPYR +I++PGFAHLQ L+ M GH+I+DV+TII T DIVFGEIDR
Sbjct: 337 LYSQGGNKPYRCRIKAPGFAHLQGLNFMSKGHLIADVITIIATLDIVFGEIDR 389
>gi|321463599|gb|EFX74614.1| hypothetical protein DAPPUDRAFT_307186 [Daphnia pulex]
Length = 469
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/414 (58%), Positives = 308/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+ + LNFGPQHPAAHGVLRL+LEL+GE V +ADPHIGLLHR TEKL E +TY Q+LPY
Sbjct: 83 VTNINLNFGPQHPAAHGVLRLVLELDGETVVRADPHIGLLHRGTEKLIEYKTYTQALPYF 142
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMM NE Y +A+EKLLNI +P+RA+YIRV+F E+TR+LNHLM IG+H+LDIGA
Sbjct: 143 DRLDYVSMMGNEQCYSLAVEKLLNIDVPLRAKYIRVLFAELTRILNHLMQIGTHALDIGA 202
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ + F ERE +++ YE VSGARMHAAY RPGGV DLP
Sbjct: 203 LTPFFWLFEEREKMMEFYERVSGARMHAAYVRPGGVALDLPL------------------ 244
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I +F ++F + IDE E +LT NRIWKQR V IG+VS E AL+ GF+G
Sbjct: 245 -------GLMDDIYEFCSKFGERIDEMEDVLTANRIWKQRTVDIGIVSAEDALNYGFSGV 297
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG+KWDLRK QPY+ Y+L+ FD+P+G GD YDRYL R+EEMR+S +II QC+ +
Sbjct: 298 MLRGSGIKWDLRKTQPYDAYDLVEFDVPVGLKGDCYDRYLCRVEEMRESLRIIDQCLNKM 357
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G V ++ KI +P R MK++ME LIHHFKLFT+G+ VP G Y+ VE+PKGEFG+
Sbjct: 358 PA--GEVRVDDAKIMAPKRSEMKTSMEALIHHFKLFTQGYNVPPGATYTAVENPKGEFGV 415
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL +L ++ HM++D+V IIGT D+VFGEIDR
Sbjct: 416 YLVSDGSSRPYRCKIKAPGFAHLAALEKVGRNHMLADIVAIIGTLDVVFGEIDR 469
>gi|209154116|gb|ACI33290.1| NADH dehydrogenase iron-sulfur protein 2, mitochondrial precursor
[Salmo salar]
Length = 466
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/422 (57%), Positives = 306/422 (72%), Gaps = 28/422 (6%)
Query: 273 KDFPV-IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRT 331
KD P+ E+ + +NFGPQHPAAHGVLRL+LEL GE V+K DPH+GLLHR TEKL E +T
Sbjct: 72 KDAPMEKEVSNLTINFGPQHPAAHGVLRLVLELSGESVKKCDPHVGLLHRGTEKLIEYKT 131
Query: 332 YLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIG 391
YLQ+LPY DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F E+TR+LNH+M I
Sbjct: 132 YLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQAPPRAQWIRVLFGELTRILNHIMAIT 191
Query: 392 SHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSII 451
+H+LDIGAM + F +RE + + YE VSGARMHAAY RPGGV++D+P
Sbjct: 192 THALDIGAMTPFFWMFEQREKMFEFYERVSGARMHAAYVRPGGVHQDMPL---------- 241
Query: 452 RNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERA 511
L+D I ++ F IDE E +LT+NRIWK R V IGVVS E A
Sbjct: 242 ---------------GLMDDIYEWCKNFSIRIDEVEEMLTNNRIWKNRTVDIGVVSAEDA 286
Query: 512 LSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKI 571
L+ GF+G MLRGSG+KWDLRK QPY+ Y+ + FD+PIG GD YDRYL R+EEMRQS +I
Sbjct: 287 LNYGFSGVMLRGSGIKWDLRKSQPYDKYDEVEFDVPIGSKGDCYDRYLCRVEEMRQSLRI 346
Query: 572 IKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVE 631
+ + + + G + ++ K+ P R MK +ME LIHHFKL+TEG+ VP G Y+ VE
Sbjct: 347 MIEALN--KMPAGEIKVDDAKVAPPKRSEMKMSMESLIHHFKLYTEGYQVPPGSTYTAVE 404
Query: 632 HPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEI 691
PKGEFG+YLVSDG+++PYR KI++PGFAHL +L M GHM++DVV IIGTQDIVFGE+
Sbjct: 405 APKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAALDMMAKGHMLADVVAIIGTQDIVFGEV 464
Query: 692 DR 693
DR
Sbjct: 465 DR 466
>gi|148284882|ref|YP_001248972.1| NADH dehydrogenase subunit D [Orientia tsutsugamushi str. Boryong]
gi|218534450|sp|A5CES2.1|NUOD_ORITB RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|146740321|emb|CAM80725.1| NADH dehydrogenase I chain D [Orientia tsutsugamushi str. Boryong]
Length = 396
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 241/413 (58%), Positives = 304/413 (73%), Gaps = 27/413 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
K +KLN GPQHPA HGVLRLILE++GE+V +ADPHIGLLHR TEKL E +TYLQ++PY D
Sbjct: 11 KKFKLNLGPQHPATHGVLRLILEMDGEIVERADPHIGLLHRGTEKLIEYKTYLQAIPYFD 70
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYVS MC EHA+ +AIE LL ++P+RAQYIRVMF E+TR+LNH + I + +LD+GA
Sbjct: 71 RLDYVSPMCQEHAFALAIEHLLKCEVPLRAQYIRVMFSELTRILNHTLNIATQALDVGAT 130
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
LL+ F ERE +++ YE VSG+R+HA Y+RPGGV +DLPE
Sbjct: 131 TPLLWMFEEREKIMEFYERVSGSRLHANYFRPGGVAQDLPE------------------- 171
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
L++ I DF +FP I + ETLLTDNRIWKQR V IG+VS ++A+ GF+G M
Sbjct: 172 ------GLIENIVDFCEQFPCKIADLETLLTDNRIWKQRTVDIGIVSKQQAMDWGFSGVM 225
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
LRGSG+ WDLRK QPY+ Y L+FD+ IGKNGD YDRYL+RIEEM QS KIIKQCI+ +
Sbjct: 226 LRGSGIAWDLRKSQPYDQYANLDFDVAIGKNGDCYDRYLIRIEEMYQSIKIIKQCIQ--K 283
Query: 581 SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIY 640
G + + + I+ P R +K +ME LI+HFKL++EG+ VP GE+Y+ VE PKGEFG+Y
Sbjct: 284 MPVGEIKTQDPSISPPKRSEIKKSMEALINHFKLYSEGYNVPAGEVYAAVEAPKGEFGVY 343
Query: 641 LVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
L SDG N+PYR +I++PGFAHLQ L M GH +SD++TII T DIVFGEIDR
Sbjct: 344 LYSDGTNRPYRCRIKAPGFAHLQGLDFMARGHSLSDIITIIATLDIVFGEIDR 396
>gi|427779543|gb|JAA55223.1| Putative nadh:ubiquinone oxidoreductase ndufs2/49 kda subunit
[Rhipicephalus pulchellus]
Length = 486
Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust.
Identities = 253/477 (53%), Positives = 324/477 (67%), Gaps = 41/477 (8%)
Query: 223 LPRLHSITSLWSSANWYEREAF--DLFGIFFDGHDDLRRLL----TDYGFVGHPFRKDFP 276
+PR A W + F D+ G++F +D++++ DY + P
Sbjct: 45 VPRFGGSLFFARGARWCPDDDFIKDMSGLYFAPDEDMKKIQPLPPNDY--------LEGP 96
Query: 277 VIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSL 336
++++ ++NFGPQHPAAHGVLRL+LELEGE V +ADPHIGLLHR TEKL E +TY Q+L
Sbjct: 97 EKQVRNMQINFGPQHPAAHGVLRLVLELEGETVVRADPHIGLLHRGTEKLMEYKTYTQAL 156
Query: 337 PYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLD 396
PYMDRLDYVSMM NE Y +A+EKLLNI IP RA+YIRV+F EITR+LNH+M IG+H LD
Sbjct: 157 PYMDRLDYVSMMANEQCYSLAVEKLLNIDIPKRAKYIRVLFGEITRILNHIMAIGTHCLD 216
Query: 397 IGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKA 456
IG + + F ERE L++ YE VSGARMHAAY RPGGV +D+P
Sbjct: 217 IGGLTPFFWLFEEREKLMEFYERVSGARMHAAYVRPGGVSQDMPL--------------- 261
Query: 457 TKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGF 516
L+D I D+ +F + +DE E LLT NRIWKQR V IG+++ E AL G
Sbjct: 262 ----------GLMDDIYDWATKFSERLDEVEDLLTGNRIWKQRTVDIGIITAENALDWGC 311
Query: 517 TGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCI 576
+G MLRGSG+KWDLRK QPY+ Y FD+PIG GD YDRYL R+EEMRQS II Q +
Sbjct: 312 SGVMLRGSGIKWDLRKTQPYDSYEDFEFDVPIGLKGDCYDRYLCRMEEMRQSLNIIYQAL 371
Query: 577 KWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
+ GPV +++NK P+R MK++ME LIHHFKLFTEG+ VP G Y+ VE PKGE
Sbjct: 372 N--KMPPGPVKTDDNKCVPPSREEMKTSMEALIHHFKLFTEGYQVPPGVTYTAVEAPKGE 429
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+Y++SDG+++PYR KI++PGFAHL +L + HM++D+V IIGT DIVFGE+DR
Sbjct: 430 FGLYMISDGSSRPYRCKIKAPGFAHLSALDFIGKNHMLADIVAIIGTLDIVFGEVDR 486
>gi|88658000|ref|YP_507426.1| NADH dehydrogenase subunit D [Ehrlichia chaffeensis str. Arkansas]
gi|123493275|sp|Q2GGK7.1|NUOD_EHRCR RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|88599457|gb|ABD44926.1| NADH dehydrogenase I, D subunit [Ehrlichia chaffeensis str.
Arkansas]
Length = 393
Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/416 (58%), Positives = 302/416 (72%), Gaps = 27/416 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
++I LNFGPQHPAAHGV+RL+LE+ GEV+ + DPHIGLLHR TEKL E +TYLQ+LP
Sbjct: 5 VKITPMTLNFGPQHPAAHGVMRLVLEMGGEVIERIDPHIGLLHRGTEKLIEYKTYLQALP 64
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y DRLDYVS MC EHAY + +EKLL +IPIRA+Y+RV+F E+TR+LNHL+ I S +LDI
Sbjct: 65 YFDRLDYVSPMCQEHAYSLCVEKLLKCEIPIRAKYLRVIFCELTRILNHLLNISSQALDI 124
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GAM LL+ F ERE +L YE SGAR H+AY RPGGV D+P+
Sbjct: 125 GAMTPLLWMFEEREKILGFYERASGARFHSAYIRPGGVAADVPD---------------- 168
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
L+D I F FPK ID+ + LLT+NRIWKQR V IG+VS E+AL GF+
Sbjct: 169 ---------DLIDDIFKFIKTFPKFIDDVDELLTENRIWKQRNVDIGIVSKEQALDWGFS 219
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GPMLR G+ WDLRK QPYEIY L F+IPIGK GD YDRYLVR+ E+RQS K+++QC+
Sbjct: 220 GPMLRACGIPWDLRKSQPYEIYEDLEFEIPIGKKGDCYDRYLVRMAEIRQSIKLLEQCLN 279
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
R GP+ +++ KI P R MK +ME LIHHFKL++EG+ VP+GE Y VE PKGEF
Sbjct: 280 --RLPNGPIKTDDRKIAPPKRSEMKESMEALIHHFKLYSEGYSVPIGETYMAVEAPKGEF 337
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+Y+VSDG NKPYR +IR+PGFAHLQ++ M GHM++D+ IIG+ DIVFGEIDR
Sbjct: 338 GVYIVSDGTNKPYRCRIRAPGFAHLQAIDMMAKGHMLADLTAIIGSLDIVFGEIDR 393
>gi|241256858|ref|XP_002404495.1| NADH:ubiquinone oxidoreductase, NDUFS2/49 kDa subunit, putative
[Ixodes scapularis]
gi|215496653|gb|EEC06293.1| NADH:ubiquinone oxidoreductase, NDUFS2/49 kDa subunit, putative
[Ixodes scapularis]
Length = 462
Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust.
Identities = 246/430 (57%), Positives = 309/430 (71%), Gaps = 29/430 (6%)
Query: 266 FVGHPFRKDFPVIE--IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRAT 323
FV P ++ P IE +++ ++NFGPQHPAAHGVLRL+LELEGE V +ADPHIGLLHR T
Sbjct: 60 FVKLPRNRNIPPIEKKVRNMQINFGPQHPAAHGVLRLVLELEGETVVRADPHIGLLHRGT 119
Query: 324 EKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRL 383
EKL E +TY Q+LPYMDRLDYVSMM NE Y +A+EKLLNI IP RA+YIRV+F EITR+
Sbjct: 120 EKLMEYKTYTQALPYMDRLDYVSMMANEQCYSLAVEKLLNIDIPKRAKYIRVLFGEITRI 179
Query: 384 LNHLMWIGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIM 443
LNH+M +G+H LDIG + + F ERE L++ YE VSGARMHAAY RPGGV +D+P
Sbjct: 180 LNHIMAVGTHCLDIGGLTPFFWLFEEREKLMEFYERVSGARMHAAYVRPGGVAQDMPL-- 237
Query: 444 PQYKSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGI 503
LLD I D+ +F + +DE E LLT NRIW+QR + I
Sbjct: 238 -----------------------GLLDDIYDWAQKFSQRLDEVEDLLTGNRIWRQRTIDI 274
Query: 504 GVVSPERALSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIE 563
GV+S E AL G +G MLRGSG+KWDLRK QPY+ Y F++P+G GD YDRYL R+E
Sbjct: 275 GVISAEDALDWGCSGVMLRGSGIKWDLRKTQPYDSYEDFEFEVPVGLKGDCYDRYLCRME 334
Query: 564 EMRQSNKIIKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPL 623
EMRQS II QC+ + GPV +++NK P+R MK++ME LIHHFKLFTEG+ VP
Sbjct: 335 EMRQSLLIIHQCLN--KMPPGPVRTDDNKCVPPSREEMKTSMEALIHHFKLFTEGYQVPP 392
Query: 624 GEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGT 683
G Y+ VE PKGEFG+Y++SDG+++PYR KI++PGFAHL +L + HM++D+V IIGT
Sbjct: 393 GATYTAVEAPKGEFGLYMISDGSSRPYRCKIKAPGFAHLSALDFIGRNHMLADIVAIIGT 452
Query: 684 QDIVFGEIDR 693
D+VFGEIDR
Sbjct: 453 LDVVFGEIDR 462
>gi|397481298|ref|XP_003811885.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial isoform 1 [Pan paniscus]
gi|397481300|ref|XP_003811886.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial isoform 2 [Pan paniscus]
Length = 463
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/414 (58%), Positives = 307/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+K+ LNFGPQHPAAHGVLRL++EL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 77 VKNMTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 136
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITRLLNH+M + +H+LD+GA
Sbjct: 137 DRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGA 196
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 197 MTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPL------------------ 238
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I F+ F +DE E LLT+NRIW+ R + IGVV+ E AL+ GF+G
Sbjct: 239 -------GLMDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGV 291
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ + FD+P+G GD YDRYL R+EEMRQS +II QC+
Sbjct: 292 MLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLN-- 349
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 350 KMPAGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 409
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGTQDIVFGE+DR
Sbjct: 410 YLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
>gi|115502341|sp|Q0MQG4.1|NDUS2_GORGO RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
2, mitochondrial; AltName: Full=Complex I-49kD;
Short=CI-49kD; AltName: Full=NADH-ubiquinone
oxidoreductase 49 kDa subunit; Flags: Precursor
gi|111661932|gb|ABH12179.1| mitochondrial complex I subunit NDUFS2 [Gorilla gorilla]
Length = 463
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/414 (58%), Positives = 307/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+K+ LNFGPQHPAAHGVLRL++EL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 77 VKNMTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 136
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITRLLNH+M + +H+LD+GA
Sbjct: 137 DRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGA 196
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 197 MTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPL------------------ 238
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I F+ F +DE E LLT+NRIW+ R + IGVV+ E AL+ GF+G
Sbjct: 239 -------GLMDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGV 291
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ + FD+P+G GD YDRYL R+EEMRQS +II QC+
Sbjct: 292 MLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLN-- 349
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 350 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 409
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGTQDIVFGE+DR
Sbjct: 410 YLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
>gi|115392079|ref|NP_001065294.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial precursor [Pan troglodytes]
gi|115502342|sp|Q0MQG5.1|NDUS2_PANTR RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
2, mitochondrial; AltName: Full=Complex I-49kD;
Short=CI-49kD; AltName: Full=NADH-ubiquinone
oxidoreductase 49 kDa subunit; Flags: Precursor
gi|111661930|gb|ABH12178.1| mitochondrial complex I subunit NDUFS2 [Pan troglodytes]
gi|410221792|gb|JAA08115.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Pan troglodytes]
gi|410221794|gb|JAA08116.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Pan troglodytes]
gi|410265062|gb|JAA20497.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Pan troglodytes]
gi|410301248|gb|JAA29224.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Pan troglodytes]
gi|410301250|gb|JAA29225.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Pan troglodytes]
gi|410301252|gb|JAA29226.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Pan troglodytes]
gi|410348760|gb|JAA40984.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Pan troglodytes]
gi|410348762|gb|JAA40985.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Pan troglodytes]
gi|410348766|gb|JAA40987.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Pan troglodytes]
Length = 463
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/414 (58%), Positives = 307/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+K+ LNFGPQHPAAHGVLRL++EL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 77 VKNMTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 136
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITRLLNH+M + +H+LD+GA
Sbjct: 137 DRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGA 196
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 197 MTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPL------------------ 238
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I F+ F +DE E LLT+NRIW+ R + IGVV+ E AL+ GF+G
Sbjct: 239 -------GLMDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGV 291
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ + FD+P+G GD YDRYL R+EEMRQS +II QC+
Sbjct: 292 MLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLN-- 349
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 350 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 409
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGTQDIVFGE+DR
Sbjct: 410 YLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
>gi|91205209|ref|YP_537564.1| NADH dehydrogenase subunit D [Rickettsia bellii RML369-C]
gi|91068753|gb|ABE04475.1| NADH dehydrogenase I chain D [Rickettsia bellii RML369-C]
Length = 395
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 240/413 (58%), Positives = 302/413 (73%), Gaps = 27/413 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
KS LN GPQHPA HGVLRLILE++GEVV ADPHIGLLHR TEKL E +TYLQ++PY D
Sbjct: 10 KSITLNLGPQHPATHGVLRLILEMDGEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFD 69
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYVS MC EHA+ +A E LL +IP RAQ+IRV+F E+TR+LNH + IGS +LD+GA
Sbjct: 70 RLDYVSPMCQEHAFALAAESLLECEIPRRAQFIRVLFSELTRILNHTLNIGSQALDVGAT 129
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
LL+ F ERE +++ YE VSG+RMH+ Y+RPGGV DLP+
Sbjct: 130 TPLLWLFEEREKIMEFYERVSGSRMHSNYFRPGGVAEDLPD------------------- 170
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
LL+ I+ F +FP + + E LL +NR+WKQRLV IGVVS + A+ GF+GPM
Sbjct: 171 ------GLLEDIDKFIQQFPPKLQDIENLLNENRLWKQRLVDIGVVSQKEAMDWGFSGPM 224
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
LRGSG+ WDLRK PY++Y ++F++PIGKNGD YDRYLVR+ EM +S KIIKQCI+ +
Sbjct: 225 LRGSGIAWDLRKSNPYDVYAEMDFEVPIGKNGDCYDRYLVRMLEMYESVKIIKQCIE--K 282
Query: 581 SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIY 640
+GPV +++ K+T P R MK +ME +IHHFKL+TEG+ VP GEIY VE PKGEFG+Y
Sbjct: 283 MPQGPVKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGEIYKAVEAPKGEFGVY 342
Query: 641 LVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
L S G N+PYR +I++PGFAHLQ L M GH+++DV+TII T DIVFGEIDR
Sbjct: 343 LYSTGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITIIATLDIVFGEIDR 395
>gi|157827453|ref|YP_001496517.1| NADH dehydrogenase subunit D [Rickettsia bellii OSU 85-389]
gi|147705275|sp|Q1RJI9.2|NUOD_RICBR RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|218534456|sp|A8GX80.1|NUOD_RICB8 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|157802757|gb|ABV79480.1| NADH dehydrogenase subunit D [Rickettsia bellii OSU 85-389]
Length = 391
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 240/413 (58%), Positives = 302/413 (73%), Gaps = 27/413 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
KS LN GPQHPA HGVLRLILE++GEVV ADPHIGLLHR TEKL E +TYLQ++PY D
Sbjct: 6 KSITLNLGPQHPATHGVLRLILEMDGEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFD 65
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYVS MC EHA+ +A E LL +IP RAQ+IRV+F E+TR+LNH + IGS +LD+GA
Sbjct: 66 RLDYVSPMCQEHAFALAAESLLECEIPRRAQFIRVLFSELTRILNHTLNIGSQALDVGAT 125
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
LL+ F ERE +++ YE VSG+RMH+ Y+RPGGV DLP+
Sbjct: 126 TPLLWLFEEREKIMEFYERVSGSRMHSNYFRPGGVAEDLPD------------------- 166
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
LL+ I+ F +FP + + E LL +NR+WKQRLV IGVVS + A+ GF+GPM
Sbjct: 167 ------GLLEDIDKFIQQFPPKLQDIENLLNENRLWKQRLVDIGVVSQKEAMDWGFSGPM 220
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
LRGSG+ WDLRK PY++Y ++F++PIGKNGD YDRYLVR+ EM +S KIIKQCI+ +
Sbjct: 221 LRGSGIAWDLRKSNPYDVYAEMDFEVPIGKNGDCYDRYLVRMLEMYESVKIIKQCIE--K 278
Query: 581 SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIY 640
+GPV +++ K+T P R MK +ME +IHHFKL+TEG+ VP GEIY VE PKGEFG+Y
Sbjct: 279 MPQGPVKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGEIYKAVEAPKGEFGVY 338
Query: 641 LVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
L S G N+PYR +I++PGFAHLQ L M GH+++DV+TII T DIVFGEIDR
Sbjct: 339 LYSTGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITIIATLDIVFGEIDR 391
>gi|4758786|ref|NP_004541.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial isoform 1 precursor [Homo sapiens]
gi|20178314|sp|O75306.2|NDUS2_HUMAN RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
2, mitochondrial; AltName: Full=Complex I-49kD;
Short=CI-49kD; AltName: Full=NADH-ubiquinone
oxidoreductase 49 kDa subunit; Flags: Precursor
gi|3337443|gb|AAC27453.1| NADH-ubiquinone oxidoreductase NDUFS2 subunit [Homo sapiens]
gi|12652835|gb|AAH00170.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Homo sapiens]
gi|12655197|gb|AAH01456.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Homo sapiens]
gi|14250796|gb|AAH08868.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Homo sapiens]
gi|119573010|gb|EAW52625.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase), isoform CRA_a [Homo
sapiens]
gi|119573011|gb|EAW52626.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase), isoform CRA_a [Homo
sapiens]
gi|123994823|gb|ABM85013.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [synthetic construct]
Length = 463
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/414 (58%), Positives = 307/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+K+ LNFGPQHPAAHGVLRL++EL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 77 VKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 136
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITRLLNH+M + +H+LD+GA
Sbjct: 137 DRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGA 196
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 197 MTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPL------------------ 238
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I F+ F +DE E LLT+NRIW+ R + IGVV+ E AL+ GF+G
Sbjct: 239 -------GLMDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGV 291
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ + FD+P+G GD YDRYL R+EEMRQS +II QC+
Sbjct: 292 MLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLN-- 349
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 350 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 409
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGTQDIVFGE+DR
Sbjct: 410 YLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
>gi|3540239|gb|AAC34362.1| NADH dehydrogenase-ubiquinone Fe-S protein 2 precursor [Homo
sapiens]
Length = 463
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/414 (58%), Positives = 307/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+K+ LNFGPQHPAAHGVLRL++EL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 77 VKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 136
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITRLLNH+M + +H+LD+GA
Sbjct: 137 DRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGA 196
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 197 MTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPL------------------ 238
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I F+ F +DE E LLT+NRIW+ R + IGVV+ E AL+ GF+G
Sbjct: 239 -------GLMDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGV 291
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ + FD+P+G GD YDRYL R+EEMRQS +II QC+
Sbjct: 292 MLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLN-- 349
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 350 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 409
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGTQDIVFGE+DR
Sbjct: 410 YLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
>gi|402703728|ref|ZP_10851707.1| NADH dehydrogenase subunit D [Rickettsia helvetica C9P9]
Length = 395
Score = 500 bits (1287), Expect = e-138, Method: Compositional matrix adjust.
Identities = 240/413 (58%), Positives = 302/413 (73%), Gaps = 27/413 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
K+ LN GPQHPA HGVLRLILE++GEVV ADPHIGLLHR TEKL E +TYLQ++PY D
Sbjct: 10 KTITLNLGPQHPATHGVLRLILEMDGEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFD 69
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYVS MC EHA+ +A+E LL K+P RAQ+IRV+F E+TR+LNH + IGS +LDIGA
Sbjct: 70 RLDYVSPMCQEHAFALAVESLLECKVPRRAQFIRVLFSELTRILNHTLNIGSQALDIGAT 129
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
LL+ F ERE +++ YE VSG+RMH+ Y+RPGGV DLP+
Sbjct: 130 TPLLWLFEEREKIMEFYERVSGSRMHSNYFRPGGVAEDLPD------------------- 170
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
LL+ I+ F +FP + + E+LL +NR+WKQRLV IGVVS + A+ GF+GPM
Sbjct: 171 ------GLLEDIDKFIEQFPPKLQDIESLLNENRLWKQRLVDIGVVSQKEAMDWGFSGPM 224
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
LRGSG+ WDLRK PY++Y+ ++F++PIGKNGD YDRY VR+ EM +S KIIKQCI+ +
Sbjct: 225 LRGSGIVWDLRKSNPYDVYDEIDFEVPIGKNGDCYDRYFVRMLEMYESIKIIKQCIE--K 282
Query: 581 SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIY 640
KG V +++ K+T P R MK +ME +IHHFKL+TEG+ VP GE Y VE PKGEFGIY
Sbjct: 283 MPKGAVKTDDPKLTPPTRATMKESMEAMIHHFKLYTEGYNVPAGETYKAVEAPKGEFGIY 342
Query: 641 LVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
L S G N+PYR +I++PGFAHLQ L M GH++SDV+TII T DIVFGEIDR
Sbjct: 343 LYSTGNNRPYRCRIKAPGFAHLQGLDFMSKGHLMSDVITIIATLDIVFGEIDR 395
>gi|426401087|ref|YP_007020059.1| NADH dehydrogenase (ubiquinone) iron-sulfur protein 2 [Candidatus
Endolissoclinum patella L2]
gi|425857755|gb|AFX98791.1| NADH dehydrogenase (ubiquinone) iron-sulfur protein 2 [Candidatus
Endolissoclinum patella L2]
Length = 392
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 244/416 (58%), Positives = 308/416 (74%), Gaps = 27/416 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
++IK +NFGPQHPAAHGVLRL+LE++GEVV +ADPHIGLLHR TEKL E +TYLQ+LP
Sbjct: 4 LQIKPITINFGPQHPAAHGVLRLVLEMKGEVVERADPHIGLLHRGTEKLIEHKTYLQALP 63
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y DRLDYV+ M EHAY +A+EKLL +++P RAQYIRV++ EI RLLNHL+ I + +LD+
Sbjct: 64 YFDRLDYVAPMNQEHAYALAVEKLLELEVPKRAQYIRVLYAEIGRLLNHLLNITTFALDV 123
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GAM +L+ F ERE L++ YE SGAR+HAA++RPGGV++DLP
Sbjct: 124 GAMTPMLWGFEEREKLMEFYERASGARLHAAFFRPGGVHQDLPT---------------- 167
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
SLL+ I+ + + FPK I++ E LLT+NRI+KQR V IGVV+ E+AL + F+
Sbjct: 168 ---------SLLEDIQSWADNFPKFINDLENLLTNNRIFKQRTVDIGVVTYEQALDLSFS 218
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GP+LRG+G WDLR QPY+ Y +FDIPIGK GD Y RYLVRIEEMRQS KII Q I
Sbjct: 219 GPVLRGTGAAWDLRTAQPYDSYEDFDFDIPIGKTGDCYARYLVRIEEMRQSLKIIHQVIA 278
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+ GPV + ++K+T P R MKS+ME LIHHFKL+TEG+ VP GE Y+ VE PKGEF
Sbjct: 279 --KMPDGPVKALDHKVTPPKRNEMKSSMEALIHHFKLYTEGYRVPAGETYTAVEAPKGEF 336
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G++L+SDG NKPYR KIR+PGFA L +L + GHM++D V IIG+ DIVFGEIDR
Sbjct: 337 GVFLISDGTNKPYRCKIRAPGFAFLAALDFLGRGHMLADTVAIIGSLDIVFGEIDR 392
>gi|225719850|gb|ACO15771.1| NADH dehydrogenase iron-sulfur protein 2, mitochondrial precursor
[Caligus clemensi]
Length = 477
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 236/414 (57%), Positives = 309/414 (74%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+K+ ++NFGPQHPAAHGVLRL+L+L+GE+VR+ADPHIGLLHR TEKL E +TY Q+LPY
Sbjct: 91 VKNVQVNFGPQHPAAHGVLRLVLQLDGELVREADPHIGLLHRGTEKLIEYKTYTQALPYF 150
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI +P+RA+YIRV+F E+TR+LNHLM IG+H LD+G
Sbjct: 151 DRLDYVSMMCNEQAYSLAVEKLLNIDVPLRAKYIRVLFGELTRILNHLMGIGTHILDLGG 210
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ + F ERE +++ YE SGARMHAAY RPGGV+RD+P
Sbjct: 211 ITPFFWLFEEREKMMEFYERASGARMHAAYVRPGGVHRDIPI------------------ 252
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD I +F ++FP+ +DE E L+T NRI+ R IGV+S E AL+ GF+G
Sbjct: 253 -------GLLDDIYEFISKFPQRMDEVEDLVTTNRIFISRTEDIGVISSEDALNYGFSGV 305
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG+KWDLRK QPY+ Y+L++FD+P+G+ GD YDRYL+R+EEMRQS +II QC+ +
Sbjct: 306 MLRGSGIKWDLRKSQPYDAYDLVDFDVPVGRKGDCYDRYLIRMEEMRQSVRIIHQCLNDM 365
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+G V +++ K P+R MKS+ME LIHHFKLFT+G+ VP G Y+ +E PKGEFG+
Sbjct: 366 --PEGEVRTDDAKCIPPSRAEMKSSMEALIHHFKLFTQGYTVPAGATYTAIEAPKGEFGV 423
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLV DG+++PYR KI++PGFAHL ++ M ++DVV IIGT D+VFGE+DR
Sbjct: 424 YLVFDGSSRPYRCKIKAPGFAHLAAMDHMSKNGYLADVVAIIGTLDVVFGEVDR 477
>gi|389611867|dbj|BAM19491.1| NADH-ubiquinone oxidoreductase fe-s protein 2 [Papilio xuthus]
Length = 426
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 238/415 (57%), Positives = 305/415 (73%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++ LNFGPQHPAAHGVLRL+LEL+GE VR ADPHIGLLHR TEKL E +TY Q+LPY
Sbjct: 39 QVRNMVLNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPY 98
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMMCNE + +A+EKLLNI IPIRA+YIR +F E+TR+ NH+M + +H+LDIG
Sbjct: 99 FDRLDYVSMMCNEQCFSLAVEKLLNIDIPIRAKYIRTLFCELTRIRNHIMAVATHALDIG 158
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L + F ERE L++ YE VSGARMHAAY RPGGV D+P
Sbjct: 159 ALTPLFWLFEEREKLMELYERVSGARMHAAYIRPGGVALDMPL----------------- 201
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L+D I +F +F + +DE E +LT NRIW QR IGVV+ E AL+ GF+G
Sbjct: 202 --------GLMDDIYEFAIKFSERLDEVEDVLTTNRIWVQRTKDIGVVTAEDALNYGFSG 253
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+KWDLRK QPY+ Y+L++FD+PIG GD YDRYL R+EEMRQS +I+ QC+
Sbjct: 254 VMLRGSGIKWDLRKAQPYDAYHLVDFDVPIGTKGDCYDRYLCRVEEMRQSLRIVDQCLN- 312
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ G V +++ K+T P+R MK++ME LIHHFKLF++G+ VP G Y+ +E PKGEFG
Sbjct: 313 -KMPPGEVKTDDAKLTPPSREEMKTSMEALIHHFKLFSQGYQVPPGSTYTAIEAPKGEFG 371
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG +KPYR KI++PGFAHL +L ++ M++D+V IIGT DIVFGE+DR
Sbjct: 372 VYLVSDGGSKPYRCKIKAPGFAHLAALEKVGKNSMLADIVAIIGTLDIVFGEVDR 426
>gi|62896795|dbj|BAD96338.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) variant [Homo sapiens]
Length = 463
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 242/414 (58%), Positives = 306/414 (73%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+K+ LNFGPQHPAAHGVLRL++EL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 77 VKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 136
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITRLLNH+M + +H+LD+GA
Sbjct: 137 DRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGA 196
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 197 MTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPL------------------ 238
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I F+ F +DE E LLT+NRIW+ R + IGVV+ E AL+ GF+G
Sbjct: 239 -------GLMDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGV 291
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ + FD+P+G GD YDRYL R+EEMRQS +II QC+
Sbjct: 292 MLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLN-- 349
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 350 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 409
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+++PYR KI++PGFAH L +M GHM++DVV IIGTQDIVFGE+DR
Sbjct: 410 YLVSDGSSRPYRCKIKAPGFAHQAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
>gi|381167341|ref|ZP_09876549.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
(NDH-1, chain D) [Phaeospirillum molischianum DSM 120]
gi|380683649|emb|CCG41361.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
(NDH-1, chain D) [Phaeospirillum molischianum DSM 120]
Length = 409
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 240/414 (57%), Positives = 302/414 (72%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
I++Y LNFGPQHPAAHGVLRLILE+ GEVV +ADPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 23 IETYSLNFGPQHPAAHGVLRLILEMSGEVVERADPHIGLLHRGTEKLIEHKTYLQAVPYF 82
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDY+ M EHA+V+A E+LL +++P RAQYIR ++ EI R+LNHL+ I S+ D+G
Sbjct: 83 DRLDYIGTMNQEHAFVLATERLLGLELPPRAQYIRTLYCEIGRVLNHLISICSYIFDVGG 142
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M +L+ F ER+ L++ YE GAR+HA Y+RPGGV DLP+
Sbjct: 143 MTPMLWGFEERDKLMEFYERACGARLHANYFRPGGVAADLPQ------------------ 184
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L D I +T FP +D+ E+L+T+NRI+KQR V IG+V+PE+AL GFTGP
Sbjct: 185 -------DLFDDIGAWTQTFPSALDDIESLVTENRIFKQRTVDIGIVTPEQALDWGFTGP 237
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
LR SG+ WDLRK QPYE+Y+ L FDIP+G NGD YDR+LVR+ EMRQS +I+QC++
Sbjct: 238 NLRASGIAWDLRKAQPYEVYDQLEFDIPVGSNGDCYDRFLVRVLEMRQSVLLIRQCLE-- 295
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
R GPV +NNK+T P R MK +ME LIHHFKLFTEGF+VP GE+Y+ VE PKGEF +
Sbjct: 296 RMPGGPVKVDNNKVTPPPRAEMKRSMEALIHHFKLFTEGFHVPAGEVYAAVEAPKGEFAV 355
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YL+SDG+ KPYR KIR PGF +LQ+L M GHM++DVV IG+ DIVFGEIDR
Sbjct: 356 YLISDGSGKPYRCKIRPPGFVNLQALDMMSRGHMLADVVANIGSIDIVFGEIDR 409
>gi|391330562|ref|XP_003739727.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial-like [Metaseiulus occidentalis]
Length = 456
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 240/409 (58%), Positives = 302/409 (73%), Gaps = 27/409 (6%)
Query: 285 LNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDY 344
+NFGPQHPAAHGVLRLIL+LEGE V + DPHIGLLHR TEKL E +TY Q+LPYMDRLDY
Sbjct: 75 INFGPQHPAAHGVLRLILQLEGETVVRCDPHIGLLHRGTEKLIEYKTYTQALPYMDRLDY 134
Query: 345 VSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLL 404
VSMMCNE Y +A+EKLLNI++P R +YIRV+F EITR+LNH+M + +H LDIG M
Sbjct: 135 VSMMCNEQCYSLAVEKLLNIEVPKRGKYIRVLFAEITRILNHIMGVTTHCLDIGGMTPFF 194
Query: 405 YAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENR 464
+ F ERE L++ YE SGARMHAAY RPGGV +D+P
Sbjct: 195 WLFEEREKLMEFYERASGARMHAAYVRPGGVSQDIPI----------------------- 231
Query: 465 QGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGS 524
L+D I D+ ++ + +DE E LLT+NRIWKQR V IGV+S E AL+ G +G +LRGS
Sbjct: 232 --GLMDDIHDWATKYGERLDEMEDLLTENRIWKQRTVDIGVISAEDALNWGCSGVILRGS 289
Query: 525 GVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKG 584
G+KWDLRK QPY+ Y +FD+PIGK GD YDRYL R+EEMRQS +II+QC+ + S G
Sbjct: 290 GIKWDLRKTQPYDNYEDFDFDVPIGKKGDCYDRYLCRVEEMRQSLRIIEQCLNKMPS--G 347
Query: 585 PVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSD 644
V +++NK+ P+R MK++ME LIHHFKLF+EG+ VP G Y+ VE PKGEFG+Y+VSD
Sbjct: 348 EVRTDDNKVCPPSREEMKTSMEALIHHFKLFSEGYQVPPGATYTAVEAPKGEFGLYMVSD 407
Query: 645 GANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G++KPYR KI++PGFAHL +L + HM++D+V IIGT DIVFGE+DR
Sbjct: 408 GSSKPYRCKIKAPGFAHLSALDFIGRNHMLADIVAIIGTLDIVFGEVDR 456
>gi|406708284|ref|YP_006758636.1| NADH dehydrogenase subunit D [alpha proteobacterium HIMB59]
gi|406654060|gb|AFS49459.1| NADH dehydrogenase subunit D [alpha proteobacterium HIMB59]
Length = 391
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 242/413 (58%), Positives = 307/413 (74%), Gaps = 27/413 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
K LNFGPQHPAAHGVLRL+++LEGEVV KA+PHIGLLHR TEKL EQ+TY Q++PY D
Sbjct: 6 KPVTLNFGPQHPAAHGVLRLLVQLEGEVVNKAEPHIGLLHRGTEKLIEQKTYTQAIPYFD 65
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYVS MC EHA+ +A+E LLNI+ P RAQYIRVMF E+TR+LNHL+ I + ++DIGA
Sbjct: 66 RLDYVSPMCQEHAFAIAVEDLLNIQAPERAQYIRVMFAEVTRILNHLLNIPAFAMDIGAA 125
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
+L+AF ERE +L+ +EAVSGAR HAAY+RPGGV++DLP+
Sbjct: 126 TPMLWAFEEREKMLEFHEAVSGARFHAAYFRPGGVHQDLPD------------------- 166
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
LL+ ++ + FPK ID E LLT+NRI+KQR V IG++S E A+ + +GP+
Sbjct: 167 ------GLLEKMKVYFENFPKFIDTLEELLTENRIFKQRSVDIGILSKEDAVRLSCSGPV 220
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
LR SGV WDLRK QPY++Y+ + F IP+GK GD+YDRYLVR+EEMR+S KII QCI +
Sbjct: 221 LRASGVAWDLRKSQPYDVYDKVKFSIPVGKTGDTYDRYLVRMEEMRESVKIILQCINQIP 280
Query: 581 SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIY 640
+ G V+ NNKIT P R MK++ME +IHHFKLFTEG+ VP G Y VE PKGEFG+
Sbjct: 281 T--GAVMVENNKITPPKRSEMKNSMEAIIHHFKLFTEGYRVPEGITYRAVEAPKGEFGVV 338
Query: 641 LVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
LVSDG++KPYR K+R+PGF HLQ+L + GH ++DV +I+G+ DIVFGEIDR
Sbjct: 339 LVSDGSSKPYRCKLRAPGFPHLQALHFLSQGHQLADVPSILGSLDIVFGEIDR 391
>gi|157828356|ref|YP_001494598.1| NADH dehydrogenase subunit D [Rickettsia rickettsii str. 'Sheila
Smith']
gi|378721169|ref|YP_005286056.1| NADH dehydrogenase subunit D [Rickettsia rickettsii str. Colombia]
gi|218534470|sp|A8GRR5.1|NUOD_RICRS RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|157800837|gb|ABV76090.1| NADH dehydrogenase subunit D [Rickettsia rickettsii str. 'Sheila
Smith']
gi|376326193|gb|AFB23432.1| NADH dehydrogenase subunit D [Rickettsia rickettsii str. Colombia]
Length = 391
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 238/413 (57%), Positives = 301/413 (72%), Gaps = 27/413 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
K+ LN GPQHPA HGVLRLILE++GEVV ADPHIGLLHR TEKL E +TYLQ++PY D
Sbjct: 6 KTITLNLGPQHPATHGVLRLILEMDGEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFD 65
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYVS MC EHA+ +A+E LL K+P RAQ+IRV+F E+TR+LNH + IGS +LDIGA
Sbjct: 66 RLDYVSPMCQEHAFALAVESLLECKVPRRAQFIRVLFSELTRILNHTLNIGSQALDIGAT 125
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
LL+ F ERE +++ YE VSG+RMH+ Y+RPGGV DLPE
Sbjct: 126 TPLLWLFEEREKIMEFYEHVSGSRMHSNYFRPGGVVADLPE------------------- 166
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
LL+ I+ F +FP + + E+LL +NR+WKQRLV IGVVS + A+ GF+GPM
Sbjct: 167 ------GLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVVSQKEAMDWGFSGPM 220
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
LRGSG+ WDLRK PY++Y+ ++F +PIGKNGD YDRY VR+ EM +S KIIKQCI+ +
Sbjct: 221 LRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQCIE--K 278
Query: 581 SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIY 640
KG + +++ K+T P R MK +ME +IHHFKL+TEG+ VP GE Y VE PKGEFG+Y
Sbjct: 279 MPKGAIKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGEFGVY 338
Query: 641 LVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
L S G N+PYR +I++PGFAHLQ L M GH+++DV+TII T DIVFGEIDR
Sbjct: 339 LYSRGGNRPYRCRIKAPGFAHLQGLDFMSQGHLMADVITIIATLDIVFGEIDR 391
>gi|221234966|ref|YP_002517402.1| NADH dehydrogenase subunit D [Caulobacter crescentus NA1000]
gi|220964138|gb|ACL95494.1| NADH-quinone oxidoreductase chain D [Caulobacter crescentus NA1000]
Length = 416
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 235/424 (55%), Positives = 303/424 (71%), Gaps = 25/424 (5%)
Query: 270 PFRKDFPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQ 329
P P ++ + +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E
Sbjct: 18 PVVPAIPETPVRKFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLMEA 77
Query: 330 RTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMW 389
RTYLQ++PY DRLDYV+ M EHA+ +AIEKLL +++PIR Q IRV++ EI R+LNHL+
Sbjct: 78 RTYLQNIPYFDRLDYVAPMNQEHAFCLAIEKLLGVEVPIRGQIIRVLYSEIGRILNHLLN 137
Query: 390 IGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSS 449
+ + ++D+GA+ L+ F ERE L+ YE GAR+H+ Y+RPGGV++DLP
Sbjct: 138 VTTQAMDVGALTPPLWGFEEREKLMVFYERACGARLHSNYFRPGGVHQDLPP-------- 189
Query: 450 IIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPE 509
L++ I+ + FPK D+ E L+TDNRI+KQR V IGVVS E
Sbjct: 190 -----------------ELVEDIDTWAKAFPKICDDIEGLITDNRIFKQRNVDIGVVSKE 232
Query: 510 RALSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSN 569
A+S GF+G M+RGSG+ WDLR+ QPYE YN FDIP+GKNGD YDRYL R++EMR+S
Sbjct: 233 EAISWGFSGVMVRGSGIAWDLRRSQPYENYNDFEFDIPLGKNGDCYDRYLCRMQEMREST 292
Query: 570 KIIKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSC 629
KII+Q + LR GPV+S +NK+ P R MK +ME LIHHFKL+TEGF P GE+Y+C
Sbjct: 293 KIIRQACEMLRKTHGPVLSEDNKVAPPRRAEMKRSMEALIHHFKLYTEGFKTPAGEVYAC 352
Query: 630 VEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFG 689
VE PKGEFG+++VSDG NKPYR KIR+PGF HL ++ M GH ++DV I+G+ DIVFG
Sbjct: 353 VEAPKGEFGVFVVSDGTNKPYRCKIRAPGFPHLAAMDWMNRGHQLADVSAILGSLDIVFG 412
Query: 690 EIDR 693
EIDR
Sbjct: 413 EIDR 416
>gi|242819539|ref|XP_002487339.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, putative
[Talaromyces stipitatus ATCC 10500]
gi|218713804|gb|EED13228.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, putative
[Talaromyces stipitatus ATCC 10500]
Length = 474
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 241/415 (58%), Positives = 298/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E +TY+Q+LPY
Sbjct: 87 KIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYMQALPY 146
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE Y +A+EKLLNI+IP RA++IR MF EITR+LNHLM + SH++D+G
Sbjct: 147 FDRLDYVSMMTNEQCYSLAVEKLLNIEIPERAKWIRTMFGEITRILNHLMSVLSHAMDVG 206
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV +DLP
Sbjct: 207 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDLPL----------------- 249
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E LLTDNRIWK R G+GVVS AL+M FTG
Sbjct: 250 --------GLLDDIYQWATQFGDRIDETEELLTDNRIWKARTQGVGVVSAADALNMSFTG 301
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y+ + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 302 VMLRGSGVPWDVRKSQPYDAYDQVEFDVPVGMNGDCYDRYLCRMEEFRQSLRIIHQCLNK 361
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + KI+ P R MK NME LIHHF LFT+G+ VP GE YS +E PKGE G
Sbjct: 362 MPA--GPVKVEDYKISPPPRAAMKENMEALIHHFLLFTKGYTVPPGETYSAIEAPKGEMG 419
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+++VSDG+ +PYR KIRSPGFAHL ++ GH+++D V IIGT D+VFGE+DR
Sbjct: 420 VFIVSDGSERPYRCKIRSPGFAHLGGFDQVSRGHLLADAVAIIGTMDLVFGEVDR 474
>gi|294083714|ref|YP_003550471.1| NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Candidatus
Puniceispirillum marinum IMCC1322]
gi|292663286|gb|ADE38387.1| NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Candidatus
Puniceispirillum marinum IMCC1322]
Length = 392
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 239/416 (57%), Positives = 310/416 (74%), Gaps = 27/416 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
++IK +NFGPQHPAAHGVLRL+LE++GEV+ +ADPHIGLLHR TEKL E +TYLQ+LP
Sbjct: 4 MQIKPITMNFGPQHPAAHGVLRLVLEMDGEVIERADPHIGLLHRGTEKLIEHKTYLQALP 63
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y DRLDYVS M EHA+ ++IEK L I +P RAQ+IRV++ EI R+LNHL+ + + ++D+
Sbjct: 64 YFDRLDYVSPMNQEHAWALSIEKALAIDVPRRAQFIRVLYCEIGRILNHLLNLTTFAIDV 123
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GAM LL+ F ERE L+ YE GAR+HAAY+RPGGV++DLP
Sbjct: 124 GAMTPLLWGFEEREQLMGFYERACGARLHAAYFRPGGVHQDLPT---------------- 167
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
LLD I D+ ++FP ID+ ETLLT+NRI+KQR V IGV+S + AL +G T
Sbjct: 168 ---------GLLDEIGDWAHKFPSFIDDMETLLTENRIFKQRTVDIGVMSEKEALDLGMT 218
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GP LR SG+ WDLRK QPY++Y ++FD+P+GK GD Y RYLVRIEEMRQS +II QCI
Sbjct: 219 GPCLRASGLPWDLRKSQPYDVYAEMDFDVPMGKTGDCYARYLVRIEEMRQSLRIIHQCIA 278
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+ +GPV++ NNK+T P R +MK++ME LIHHFKL+TEGF+VP GE Y+ VE PKGEF
Sbjct: 279 EM--PEGPVLAENNKVTPPHRSDMKNSMEALIHHFKLYTEGFHVPEGESYTAVEAPKGEF 336
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLV+DG+N+PYR KIR+PGF + ++ + GHM++D V IIG+ D+VFGEIDR
Sbjct: 337 GVYLVADGSNRPYRCKIRAPGFYFMAAVDYLSRGHMLADSVAIIGSLDVVFGEIDR 392
>gi|383501849|ref|YP_005415208.1| NADH dehydrogenase subunit D [Rickettsia australis str. Cutlack]
gi|378932860|gb|AFC71365.1| NADH dehydrogenase subunit D [Rickettsia australis str. Cutlack]
Length = 391
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 236/413 (57%), Positives = 303/413 (73%), Gaps = 27/413 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
K+ LN GPQHPA HGVLRLILE++GEVV ADPHIGLLHR TEKL E +TYLQ++PY D
Sbjct: 6 KTITLNLGPQHPATHGVLRLILEMDGEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFD 65
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYVS MC EHA+ +A+E LL ++P RAQ++RV+F E+TR+LNH + IGS +LDIGA
Sbjct: 66 RLDYVSPMCQEHAFALAVESLLECEVPRRAQFVRVLFSELTRILNHTLNIGSQALDIGAT 125
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
LL+ F ERE +++ YE VSG+RMH+ Y+RPGGV DLP+
Sbjct: 126 TPLLWLFEEREKIMEFYERVSGSRMHSNYFRPGGVAEDLPD------------------- 166
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
LL+ I+ F N+FP + + E+LL +NR+WKQRLV IGVVS + A+ GF+GPM
Sbjct: 167 ------GLLEDIDKFINQFPPKLHDIESLLNENRLWKQRLVDIGVVSQKEAMDWGFSGPM 220
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
LRGSG+ WDLRK PY++Y+ ++F++PIGKNGD YDRY VR+ E+ +S KIIKQCI+ +
Sbjct: 221 LRGSGIAWDLRKSNPYDVYDEMDFEVPIGKNGDCYDRYFVRMLEIYESIKIIKQCIE--K 278
Query: 581 SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIY 640
KG V +++ K+T P R MK +ME +IHHFKL+TEG+ VP GE Y VE PKGEFG+Y
Sbjct: 279 MPKGAVKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPTGETYKAVEAPKGEFGVY 338
Query: 641 LVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
L S G N+PYR +I++PGFAHLQ L M GH+++DV+TII T DIVFGEIDR
Sbjct: 339 LYSQGVNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITIIATLDIVFGEIDR 391
>gi|165933064|ref|YP_001649853.1| NADH dehydrogenase subunit D [Rickettsia rickettsii str. Iowa]
gi|165908151|gb|ABY72447.1| NADH-quinone oxidoreductase chain D [Rickettsia rickettsii str.
Iowa]
Length = 417
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 239/422 (56%), Positives = 304/422 (72%), Gaps = 27/422 (6%)
Query: 272 RKDFPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRT 331
RK+ K+ LN GPQHPA HGVLRLILE++GEVV ADPHIGLLHR TEKL E +T
Sbjct: 23 RKNTMTNNTKTITLNLGPQHPATHGVLRLILEMDGEVVNNADPHIGLLHRGTEKLIEHKT 82
Query: 332 YLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIG 391
YLQ++PY DRLDYVS MC EHA+ +A+E LL ++P RAQ+IRV+F E+TR+LNH + IG
Sbjct: 83 YLQAIPYFDRLDYVSPMCQEHAFALAVESLLECEVPRRAQFIRVLFSELTRILNHTLNIG 142
Query: 392 SHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSII 451
S +LDIGA LL+ F ERE +++ YE VSG+RMH+ Y+RPGGV DLPE
Sbjct: 143 SQALDIGATTPLLWLFEEREKIMEFYEHVSGSRMHSNYFRPGGVVADLPE---------- 192
Query: 452 RNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERA 511
LL+ I+ F +FP + + E+LL +NR+WKQRLV IGVVS + A
Sbjct: 193 ---------------GLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVVSQKEA 237
Query: 512 LSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKI 571
+ GF+GPMLRGSG+ WDLRK PY++Y+ ++F +PIGKNGD YDRY VR+ EM +S KI
Sbjct: 238 MDWGFSGPMLRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKI 297
Query: 572 IKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVE 631
IKQCI+ + KG + +++ K+T P R MK +ME +IHHFKL+TEG+ VP GE Y VE
Sbjct: 298 IKQCIE--KMPKGAIKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVE 355
Query: 632 HPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEI 691
PKGEFG+YL S G N+PYR +I++PGFAHLQ L M GH+++DV+TII T DIVFGEI
Sbjct: 356 APKGEFGVYLYSRGGNRPYRCRIKAPGFAHLQGLDFMSQGHLMADVITIIATLDIVFGEI 415
Query: 692 DR 693
DR
Sbjct: 416 DR 417
>gi|11466215|ref|NP_066538.1| NADH dehydrogenase subunit 7 [Naegleria gruberi]
gi|10444250|gb|AAG17816.1|AF288092_41 NADH dehydrogenase subunit 7 [Naegleria gruberi]
Length = 395
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 250/412 (60%), Positives = 300/412 (72%), Gaps = 27/412 (6%)
Query: 282 SYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDR 341
++ LNFGPQHPAAHGVLRLI+EL+GE+++ ADPHIGLLHR TEKL E +TY+Q LPY DR
Sbjct: 11 NFILNFGPQHPAAHGVLRLIVELDGEIIKNADPHIGLLHRGTEKLLEYKTYIQGLPYFDR 70
Query: 342 LDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMG 401
LDYVSMMC EH Y +AIE+LL ++P+RAQYIRV+F EITRLLNHL+ I +H++D+GA+
Sbjct: 71 LDYVSMMCQEHTYCLAIERLLKCEVPLRAQYIRVLFSEITRLLNHLLSITTHAMDVGALT 130
Query: 402 VLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILN 461
L+AF ERE L++ YE VSGARMHA Y+RPGGV DLP+
Sbjct: 131 PFLWAFEEREKLMEFYERVSGARMHANYFRPGGVSYDLPK-------------------- 170
Query: 462 ENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPML 521
LL I DF F IDE E LLT NRIWKQRLV IGVV+ AL MGFTG ML
Sbjct: 171 -----GLLHDIYDFIYSFASRIDEMEELLTTNRIWKQRLVDIGVVNYRDALDMGFTGVML 225
Query: 522 RGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRS 581
RGSG+ WDLRK +PYEIY LNF IP+G GD YDRYLVR+ EMRQS II QC+ +
Sbjct: 226 RGSGIPWDLRKCEPYEIYKQLNFYIPVGIYGDCYDRYLVRMSEMRQSISIIHQCLN--KI 283
Query: 582 NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYL 641
G V +N+KIT P R +K++ME LIHHFK ++EG VP G Y VE PKGE G L
Sbjct: 284 PNGLVRVDNHKITPPYRKQIKTSMESLIHHFKFYSEGINVPQGISYGGVEAPKGETGALL 343
Query: 642 VSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
VS+G+N PYR KIRSPG+AHLQ ++ +ISGHMI+D+VT+IGT DIVFGE+DR
Sbjct: 344 VSNGSNMPYRCKIRSPGYAHLQGINHVISGHMIADLVTVIGTLDIVFGEVDR 395
>gi|296811214|ref|XP_002845945.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma otae CBS
113480]
gi|238843333|gb|EEQ32995.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma otae CBS
113480]
Length = 473
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 237/415 (57%), Positives = 299/415 (72%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E +TY+Q+LPY
Sbjct: 86 KIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYMQALPY 145
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLNI++P RA++IR MF EITR+LNHLM + SH++D+G
Sbjct: 146 FDRLDYVSMMTNEQCFSLAVEKLLNIEVPERAKWIRTMFGEITRILNHLMSVLSHAMDVG 205
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV++D+P
Sbjct: 206 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPV----------------- 248
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E LLTDNRIWK R VG+GVV+ AL+ GF+G
Sbjct: 249 --------GLLDDIYQWATQFSDRIDETEELLTDNRIWKARTVGVGVVTAAEALNYGFSG 300
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 301 VMLRGSGVPWDIRKSQPYDAYGQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNK 360
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + KI+ P RI MK NME LIHHF LFT+G+ VP GE YS +E PKGE
Sbjct: 361 MPA--GPVRVEDYKISPPPRIAMKENMEALIHHFLLFTKGYTVPPGETYSAIEAPKGEMA 418
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++LVSDG+ +PYR KIR+PGFAHL ++ GH+++D V IIGT D+VFGE+DR
Sbjct: 419 VFLVSDGSERPYRCKIRAPGFAHLACFDQLSRGHLLADAVAIIGTMDLVFGEVDR 473
>gi|34580593|ref|ZP_00142073.1| NADH dehydrogenase I chain D [Rickettsia sibirica 246]
gi|28261978|gb|EAA25482.1| NADH dehydrogenase I chain D [Rickettsia sibirica 246]
Length = 391
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 237/413 (57%), Positives = 301/413 (72%), Gaps = 27/413 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
K+ LN GPQHPA HGVLRLILE++GEVV ADPHIGLLHR TEKL E +TYLQ++PY D
Sbjct: 6 KTITLNLGPQHPATHGVLRLILEMDGEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFD 65
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYVS MC EHA+ +A+E LL ++P RAQ+IRV+F E+TR+LNH + IGS +LDIGA
Sbjct: 66 RLDYVSPMCQEHAFALAVESLLECEVPRRAQFIRVLFSELTRILNHTLNIGSQALDIGAT 125
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
LL+ F ERE +++ YE VSG+RMH+ Y+RPGGV DLPE
Sbjct: 126 TPLLWLFEEREKIMEFYEHVSGSRMHSNYFRPGGVAADLPE------------------- 166
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
LL+ I+ F +FP + + E+LL +NR+WKQRLV IGVVS + A+ GF+GPM
Sbjct: 167 ------GLLEDIDKFIEQFPSKLHDIESLLNENRLWKQRLVDIGVVSQKEAMDWGFSGPM 220
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
LRGSG+ WDLRK PY++Y+ ++F +PIGKNGD YDRY VR+ EM +S KIIKQCI+ +
Sbjct: 221 LRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQCIE--K 278
Query: 581 SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIY 640
KG + +++ K+T P R MK +ME +IHHFKL+TEG+ VP GE Y VE PKGEFG+Y
Sbjct: 279 MPKGAIKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGEFGVY 338
Query: 641 LVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
L S G N+PYR +I++PGFAHLQ L M GH+++DV+TII T DIVFGEIDR
Sbjct: 339 LYSQGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITIIATLDIVFGEIDR 391
>gi|229586621|ref|YP_002845122.1| NADH dehydrogenase subunit D [Rickettsia africae ESF-5]
gi|228021671|gb|ACP53379.1| NADH dehydrogenase I chain D [Rickettsia africae ESF-5]
Length = 422
Score = 497 bits (1279), Expect = e-137, Method: Compositional matrix adjust.
Identities = 238/422 (56%), Positives = 303/422 (71%), Gaps = 27/422 (6%)
Query: 272 RKDFPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRT 331
RK+ K+ LN GPQHPA HGVLRLILE++GEVV ADPHIGLLHR TEKL E +T
Sbjct: 28 RKNTMTNNTKTITLNLGPQHPATHGVLRLILEMDGEVVNNADPHIGLLHRGTEKLIEHKT 87
Query: 332 YLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIG 391
YLQ++PY DRLDYVS MC EHA+ +A+E LL ++P RAQ+IRV+F E+TR+LNH + IG
Sbjct: 88 YLQAIPYFDRLDYVSPMCQEHAFALAVESLLECEVPRRAQFIRVLFSELTRILNHTLNIG 147
Query: 392 SHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSII 451
S +LDIGA LL+ F ERE +++ YE VSG+RMH+ Y+RPGGV DLPE
Sbjct: 148 SQALDIGATTPLLWLFEEREKIMEFYEHVSGSRMHSNYFRPGGVAADLPE---------- 197
Query: 452 RNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERA 511
LL+ I+ F +FP + + E+LL +NR+WKQRLV IGV S + A
Sbjct: 198 ---------------GLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVASQKEA 242
Query: 512 LSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKI 571
+ GF+GPMLRGSG+ WDLRK PY++Y+ ++F +PIGKNGD YDRY VR+ EM +S KI
Sbjct: 243 MDWGFSGPMLRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKI 302
Query: 572 IKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVE 631
IKQCI+ + KG + +++ K+T P R MK +ME +IHHFKL+TEG+ VP GE Y VE
Sbjct: 303 IKQCIE--KMPKGAIKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVE 360
Query: 632 HPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEI 691
PKGEFG+YL S G N+PYR +I++PGFAHLQ L M GH+++DV+TII T DIVFGEI
Sbjct: 361 APKGEFGVYLYSQGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITIIATLDIVFGEI 420
Query: 692 DR 693
DR
Sbjct: 421 DR 422
>gi|15619556|gb|AAL03020.1| NADH dehydrogenase I chain D [Rickettsia conorii str. Malish 7]
Length = 422
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 238/422 (56%), Positives = 303/422 (71%), Gaps = 27/422 (6%)
Query: 272 RKDFPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRT 331
RK+ K+ LN GPQHPA HGVLRLILE++GEVV ADPHIGLLHR TEKL E +T
Sbjct: 28 RKNTMTNNTKTITLNIGPQHPATHGVLRLILEMDGEVVNNADPHIGLLHRGTEKLIEHKT 87
Query: 332 YLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIG 391
YLQ++PY DRLDYVS MC EHA+ +A+E LL ++P RAQ+IRV+F E+TR+LNH + IG
Sbjct: 88 YLQAIPYFDRLDYVSPMCQEHAFALAVESLLECEVPRRAQFIRVLFSELTRILNHTLNIG 147
Query: 392 SHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSII 451
S +LDIGA LL+ F ERE +++ YE VSG+RMH+ Y+RPGGV DLPE
Sbjct: 148 SQALDIGATTPLLWLFEEREKIMEFYEHVSGSRMHSNYFRPGGVAADLPE---------- 197
Query: 452 RNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERA 511
LL+ I+ F +FP + + E+LL +NR+WKQRLV IGV S + A
Sbjct: 198 ---------------GLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVASQKEA 242
Query: 512 LSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKI 571
+ GF+GPMLRGSG+ WDLRK PY++Y+ ++F +PIGKNGD YDRY VR+ EM +S KI
Sbjct: 243 MDWGFSGPMLRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKI 302
Query: 572 IKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVE 631
IKQCI+ + KG + +++ K+T P R MK +ME +IHHFKL+TEG+ VP GE Y VE
Sbjct: 303 IKQCIE--KMPKGAIKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVE 360
Query: 632 HPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEI 691
PKGEFG+YL S G N+PYR +I++PGFAHLQ L M GH+++DV+TII T DIVFGEI
Sbjct: 361 APKGEFGVYLYSQGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITIIATLDIVFGEI 420
Query: 692 DR 693
DR
Sbjct: 421 DR 422
>gi|380813052|gb|AFE78400.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial isoform 2 precursor [Macaca mulatta]
gi|384947236|gb|AFI37223.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial isoform 2 precursor [Macaca mulatta]
Length = 457
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 236/408 (57%), Positives = 303/408 (74%), Gaps = 27/408 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+K+ LNFGPQHPAAHGVLRL++EL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 77 VKNMTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 136
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITRLLNH+M + +H+LD+GA
Sbjct: 137 DRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGA 196
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M L + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 197 MTPLFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPL------------------ 238
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I +F+ F +DE E +LT+NRIW+ R + IGVV+ E AL+ GF+G
Sbjct: 239 -------GLMDDIYEFSKNFSLRLDELEEMLTNNRIWRNRTIDIGVVTAEEALNYGFSGV 291
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ ++FD+P+G GD YDRYL R+EEMRQS +II QC+
Sbjct: 292 MLRGSGIQWDLRKTQPYDVYDQVDFDVPVGSRGDCYDRYLCRVEEMRQSLRIIVQCLN-- 349
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 350 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 409
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIV 687
YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGT+ IV
Sbjct: 410 YLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTRLIV 457
>gi|390338714|ref|XP_786922.3| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial-like [Strongylocentrotus purpuratus]
Length = 465
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 241/426 (56%), Positives = 301/426 (70%), Gaps = 29/426 (6%)
Query: 270 PFRKDFPVIE--IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLA 327
P+ P+ E + + +NFGPQHPAAHGVLRL+LEL GE + + DPHIGLLHR TEKL
Sbjct: 67 PWDDRDPIAEKDVANLVINFGPQHPAAHGVLRLVLELSGESIVRCDPHIGLLHRGTEKLI 126
Query: 328 EQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHL 387
E +TY+Q+LPY DRLDYVSMMCNE AY +A+EK+LNI +P RA+YIRVM E+TR+ NH+
Sbjct: 127 EYKTYMQALPYFDRLDYVSMMCNEQAYSLAVEKMLNITVPERAKYIRVMMGELTRIANHI 186
Query: 388 MWIGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYK 447
M +G+H+LDIGAM + F ERE + YE V GARMHAAY RPGGV +DLP
Sbjct: 187 MAVGTHALDIGAMTPFFWLFEEREKTFELYERVCGARMHAAYVRPGGVSQDLPL------ 240
Query: 448 SSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVS 507
LD + DF F IDE E +LT+NRIWK R V IGVV+
Sbjct: 241 -------------------GFLDDMYDFIKNFSIRIDELEEMLTNNRIWKDRTVDIGVVT 281
Query: 508 PERALSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQ 567
E AL+ GF+G MLRGSG+KWDLRK QPY+ Y +NFDIPIG GD YDRYL R+EEMRQ
Sbjct: 282 AEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYEKMNFDIPIGSKGDCYDRYLCRVEEMRQ 341
Query: 568 SNKIIKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIY 627
S +I+ QC+ + +G + +++KI+ P R MK +ME LIHHFK FT+GF VP G Y
Sbjct: 342 SLRIVHQCLNEM--PEGEIKVDDHKISPPGRAEMKDSMESLIHHFKHFTQGFQVPPGATY 399
Query: 628 SCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIV 687
+ +E PKGEFG+Y+VSDG++KPYR KIR+PGF HL L ++ GHM++DVV IIGT D+V
Sbjct: 400 TAIEAPKGEFGVYMVSDGSSKPYRCKIRAPGFLHLAGLDKVCKGHMLADVVAIIGTLDVV 459
Query: 688 FGEIDR 693
FGE+DR
Sbjct: 460 FGEVDR 465
>gi|327297238|ref|XP_003233313.1| NADH-ubiquinone oxidoreductase subunit [Trichophyton rubrum CBS
118892]
gi|326464619|gb|EGD90072.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Trichophyton rubrum
CBS 118892]
Length = 473
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 238/415 (57%), Positives = 299/415 (72%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E +TY+Q+LPY
Sbjct: 86 KIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYMQALPY 145
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLNI+IP RA++IR MF EITR+LNHLM + SH++D+G
Sbjct: 146 FDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKWIRTMFGEITRILNHLMSVLSHAMDVG 205
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV++D+P
Sbjct: 206 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPL----------------- 248
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E LLTDNRIWK R VG+GVV+ AL+ GF+G
Sbjct: 249 --------GLLDDIYQWATQFADRIDETEELLTDNRIWKARTVGVGVVTAAEALNYGFSG 300
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 301 VMLRGSGVPWDIRKSQPYDAYGQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNK 360
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + KI+ P RI MK NME LIHHF LFT+G+ VP GE YS +E PKGE
Sbjct: 361 MPA--GPVRVEDYKISPPPRIAMKENMEALIHHFLLFTKGYTVPPGETYSAIEAPKGEMA 418
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++LVSDG+ +PYR KIR+PGFAHL ++ GH+++D V IIGT D+VFGE+DR
Sbjct: 419 VFLVSDGSERPYRCKIRAPGFAHLGCFDQLSRGHLLADAVAIIGTMDLVFGEVDR 473
>gi|326485519|gb|EGE09529.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Trichophyton equinum
CBS 127.97]
Length = 473
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 238/415 (57%), Positives = 299/415 (72%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E +TY+Q+LPY
Sbjct: 86 KIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYMQALPY 145
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLNI+IP RA++IR MF EITR+LNHLM + SH++D+G
Sbjct: 146 FDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKWIRTMFGEITRILNHLMSVLSHAMDVG 205
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV++D+P
Sbjct: 206 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPL----------------- 248
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E LLTDNRIWK R VG+GVV+ AL+ GF+G
Sbjct: 249 --------GLLDDIYQWATQFADRIDETEELLTDNRIWKARTVGVGVVTAAEALNYGFSG 300
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 301 VMLRGSGVPWDIRKSQPYDAYGQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNK 360
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + KI+ P RI MK NME LIHHF LFT+G+ VP GE YS +E PKGE
Sbjct: 361 MPA--GPVRVEDYKISPPPRIAMKENMEALIHHFLLFTKGYTVPPGETYSAIEAPKGEMA 418
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++LVSDG+ +PYR KIR+PGFAHL ++ GH+++D V IIGT D+VFGE+DR
Sbjct: 419 VFLVSDGSERPYRCKIRAPGFAHLGCFDQLSRGHLLADAVAIIGTMDLVFGEVDR 473
>gi|238651037|ref|YP_002916894.1| NADH dehydrogenase subunit D [Rickettsia peacockii str. Rustic]
gi|238625135|gb|ACR47841.1| NADH dehydrogenase subunit D [Rickettsia peacockii str. Rustic]
Length = 391
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 237/413 (57%), Positives = 301/413 (72%), Gaps = 27/413 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
K+ LN GPQHPA HGVLRLILE++GEVV ADPHIGLLHR TEKL E +TYLQ++PY D
Sbjct: 6 KTITLNLGPQHPATHGVLRLILEMDGEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFD 65
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYVS MC EHA+ +A+E LL ++P RAQ+IRV+F E+TR+LNH + IGS +LDIGA
Sbjct: 66 RLDYVSPMCQEHAFALAVESLLECEVPRRAQFIRVLFSELTRILNHTLNIGSQALDIGAT 125
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
LL+ F ERE +++ YE VSG+RMH+ Y+RPGGV DLPE
Sbjct: 126 TPLLWLFEEREKIMEFYEHVSGSRMHSNYFRPGGVAADLPE------------------- 166
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
LL+ I+ F +FP + + E+LL +NR+WKQRLV IGVVS + A+ GF+GPM
Sbjct: 167 ------GLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVVSQKEAMDWGFSGPM 220
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
LRGSG+ WDLRK PY++Y+ ++F +PIGKNGD YDRY VR+ EM +S KIIKQCI+ +
Sbjct: 221 LRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQCIE--K 278
Query: 581 SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIY 640
KG + +++ K+T P R MK +ME +IHHFKL+TEG+ VP GE Y VE PKGEFG+Y
Sbjct: 279 MPKGAIKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGEFGVY 338
Query: 641 LVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
L S G N+PYR +I++PGFAHLQ L M GH+++DV+TII T DIVFGEIDR
Sbjct: 339 LYSQGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITIIATLDIVFGEIDR 391
>gi|452750665|ref|ZP_21950412.1| NADH-ubiquinone oxidoreductase chain D [alpha proteobacterium
JLT2015]
gi|451961859|gb|EMD84268.1| NADH-ubiquinone oxidoreductase chain D [alpha proteobacterium
JLT2015]
Length = 420
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 228/417 (54%), Positives = 310/417 (74%), Gaps = 27/417 (6%)
Query: 277 VIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSL 336
EI++Y +NFGPQHPAAHGVLRLI+E++GE++ + DPH+GLLHR TEKL E +TYLQ+L
Sbjct: 31 TTEIQNYSMNFGPQHPAAHGVLRLIMEMDGEIIERIDPHVGLLHRGTEKLIEYKTYLQAL 90
Query: 337 PYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLD 396
PYMDRLDYVS MC EH+YV+A+EKLL++++P+RAQYIR MF EITR+ NH++ +H++D
Sbjct: 91 PYMDRLDYVSPMCQEHSYVLAVEKLLDLEVPLRAQYIRTMFAEITRITNHILNTTAHAMD 150
Query: 397 IGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKA 456
+GAM +L+ F ERE + + YE SGAR HAAY+RPGGV++DLP
Sbjct: 151 VGAMTPMLWLFEEREYICEFYERASGARFHAAYFRPGGVHQDLPP--------------- 195
Query: 457 TKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGF 516
LL I ++ RFPK + ++E L+ NRI+KQR V IG++S E A++ GF
Sbjct: 196 ----------KLLADIAEWAERFPKVLADFEALVAGNRIFKQRNVDIGIISKEDAVAWGF 245
Query: 517 TGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCI 576
+GP +RGSG+ WD+RK QPY++Y+ + FDIP+G +GD YDR++VRI+EM++S KIIKQC+
Sbjct: 246 SGPCIRGSGIAWDIRKSQPYDVYDRMEFDIPVGTSGDCYDRFMVRIQEMKESLKIIKQCV 305
Query: 577 KWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
+ +GPV++ + KI+ P R MK +ME LI+HFKL+TEGF+VP GE+Y E PKGE
Sbjct: 306 AEM--PEGPVMATDPKISPPRRGEMKRSMEALINHFKLYTEGFHVPEGEVYVATESPKGE 363
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FGIYLVSDG+NKPYR KIR F+HLQ++ + GHM++D ++G+ DIVFGE DR
Sbjct: 364 FGIYLVSDGSNKPYRCKIRPTAFSHLQAMEFLCKGHMLADAPAVLGSLDIVFGECDR 420
>gi|197131010|gb|ACH47055.1| NADH dehydrogenase subunit 7 [Isoetes engelmannii]
gi|205277649|gb|ACI02098.1| NADH dehydrogenase subunit 7 [Isoetes engelmannii]
gi|205277651|gb|ACI02100.1| NADH dehydrogenase subunit 7 [Isoetes engelmannii]
gi|217331576|gb|ACK38302.1| NADH dehydrogenase subunit 7 [Isoetes engelmannii]
Length = 396
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 240/415 (57%), Positives = 305/415 (73%), Gaps = 28/415 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
I ++ LNFGPQHPAAHGVLRL+LE++GE+V +A+PHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 9 IDNFTLNFGPQHPAAHGVLRLVLEMDGELVERAEPHIGLLHRGTEKLIEYKTYLQALPYF 68
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMM EHAY +A+E+L N ++P+RAQYIRV+F EITR+LNHL+ + +H++D+GA
Sbjct: 69 DRLDYVSMMAQEHAYSLAVERLCNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMDVGA 128
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+AF ERE L + YE VSGARMHA+Y RPGGV +DLP
Sbjct: 129 LTPFLWAFEEREKLFEFYERVSGARMHASYVRPGGVAQDLP------------------- 169
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L + I FT F IDE E +LT+NRIWKQRLV IG+V+ E AL GF+G
Sbjct: 170 ------SGLSEDIFLFTQEFASRIDELEEMLTNNRIWKQRLVDIGIVTAEEALDWGFSGV 223
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSGV WDLRK PY++Y+LL+FD+P+G GD YDRY +RIEEMR+S +I+ QC+ +
Sbjct: 224 MLRGSGVCWDLRKAAPYDVYDLLDFDVPVGTRGDCYDRYRIRIEEMRESLRIMVQCLNKM 283
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGE-IYSCVEHPKGEFG 638
S G + +++ K+ P+R MK +ME LIHHFK +TE F VP Y+ VE PKGEFG
Sbjct: 284 PS--GMIKADDCKLCPPSRSEMKQSMESLIHHFKHYTECFSVPASSPTYAAVEAPKGEFG 341
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++LVS+G N+PYR +IR+PGFAHLQ L M HM++DVVTIIGTQDIVFGE+DR
Sbjct: 342 VFLVSNGTNRPYRCRIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 396
>gi|16126195|ref|NP_420759.1| NADH dehydrogenase subunit D [Caulobacter crescentus CB15]
gi|81782639|sp|Q9A6X4.1|NUOD_CAUCR RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|13423411|gb|AAK23927.1| NADH dehydrogenase I, D subunit [Caulobacter crescentus CB15]
Length = 398
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 234/419 (55%), Positives = 302/419 (72%), Gaps = 25/419 (5%)
Query: 275 FPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQ 334
P ++ + +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E RTYLQ
Sbjct: 5 IPETPVRKFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLMEARTYLQ 64
Query: 335 SLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHS 394
++PY DRLDYV+ M EHA+ +AIEKLL +++PIR Q IRV++ EI R+LNHL+ + + +
Sbjct: 65 NIPYFDRLDYVAPMNQEHAFCLAIEKLLGVEVPIRGQIIRVLYSEIGRILNHLLNVTTQA 124
Query: 395 LDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNN 454
+D+GA+ L+ F ERE L+ YE GAR+H+ Y+RPGGV++DLP
Sbjct: 125 MDVGALTPPLWGFEEREKLMVFYERACGARLHSNYFRPGGVHQDLPP------------- 171
Query: 455 KATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSM 514
L++ I+ + FPK D+ E L+TDNRI+KQR V IGVVS E A+S
Sbjct: 172 ------------ELVEDIDTWAKAFPKICDDIEGLITDNRIFKQRNVDIGVVSKEEAISW 219
Query: 515 GFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQ 574
GF+G M+RGSG+ WDLR+ QPYE YN FDIP+GKNGD YDRYL R++EMR+S KII+Q
Sbjct: 220 GFSGVMVRGSGIAWDLRRSQPYENYNDFEFDIPLGKNGDCYDRYLCRMQEMRESTKIIRQ 279
Query: 575 CIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPK 634
+ LR GPV+S +NK+ P R MK +ME LIHHFKL+TEGF P GE+Y+CVE PK
Sbjct: 280 ACEMLRKTHGPVLSEDNKVAPPRRAEMKRSMEALIHHFKLYTEGFKTPAGEVYACVEAPK 339
Query: 635 GEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
GEFG+++VSDG NKPYR KIR+PGF HL ++ M GH ++DV I+G+ DIVFGEIDR
Sbjct: 340 GEFGVFVVSDGTNKPYRCKIRAPGFPHLAAMDWMNRGHQLADVSAILGSLDIVFGEIDR 398
>gi|378722521|ref|YP_005287407.1| NADH dehydrogenase subunit D [Rickettsia rickettsii str. Arizona]
gi|378723877|ref|YP_005288761.1| NADH dehydrogenase subunit D [Rickettsia rickettsii str. Hauke]
gi|379016569|ref|YP_005292804.1| NADH dehydrogenase subunit D [Rickettsia rickettsii str. Brazil]
gi|379017666|ref|YP_005293901.1| NADH dehydrogenase subunit D [Rickettsia rickettsii str. Hino]
gi|218534471|sp|B0BX71.2|NUOD_RICRO RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|376325093|gb|AFB22333.1| NADH dehydrogenase subunit D [Rickettsia rickettsii str. Brazil]
gi|376327545|gb|AFB24783.1| NADH dehydrogenase subunit D [Rickettsia rickettsii str. Arizona]
gi|376330232|gb|AFB27468.1| NADH dehydrogenase subunit D [Rickettsia rickettsii str. Hino]
gi|376332892|gb|AFB30125.1| NADH dehydrogenase subunit D [Rickettsia rickettsii str. Hauke]
Length = 391
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 237/413 (57%), Positives = 301/413 (72%), Gaps = 27/413 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
K+ LN GPQHPA HGVLRLILE++GEVV ADPHIGLLHR TEKL E +TYLQ++PY D
Sbjct: 6 KTITLNLGPQHPATHGVLRLILEMDGEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFD 65
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYVS MC EHA+ +A+E LL ++P RAQ+IRV+F E+TR+LNH + IGS +LDIGA
Sbjct: 66 RLDYVSPMCQEHAFALAVESLLECEVPRRAQFIRVLFSELTRILNHTLNIGSQALDIGAT 125
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
LL+ F ERE +++ YE VSG+RMH+ Y+RPGGV DLPE
Sbjct: 126 TPLLWLFEEREKIMEFYEHVSGSRMHSNYFRPGGVVADLPE------------------- 166
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
LL+ I+ F +FP + + E+LL +NR+WKQRLV IGVVS + A+ GF+GPM
Sbjct: 167 ------GLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVVSQKEAMDWGFSGPM 220
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
LRGSG+ WDLRK PY++Y+ ++F +PIGKNGD YDRY VR+ EM +S KIIKQCI+ +
Sbjct: 221 LRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQCIE--K 278
Query: 581 SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIY 640
KG + +++ K+T P R MK +ME +IHHFKL+TEG+ VP GE Y VE PKGEFG+Y
Sbjct: 279 MPKGAIKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGEFGVY 338
Query: 641 LVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
L S G N+PYR +I++PGFAHLQ L M GH+++DV+TII T DIVFGEIDR
Sbjct: 339 LYSRGGNRPYRCRIKAPGFAHLQGLDFMSQGHLMADVITIIATLDIVFGEIDR 391
>gi|158423294|ref|YP_001524586.1| NADH-quinone dehydrogenase chain D 1 protein [Azorhizobium
caulinodans ORS 571]
gi|218534385|sp|A8I3Z3.1|NUOD_AZOC5 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|158330183|dbj|BAF87668.1| NADH-quinone dehydrogenase chain D 1 protein [Azorhizobium
caulinodans ORS 571]
Length = 402
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 232/427 (54%), Positives = 308/427 (72%), Gaps = 25/427 (5%)
Query: 267 VGHPFRKDFPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKL 326
+ H P + ++++++NFGPQHPAAHGVLR++LEL GEVV + DPHIGLLHR TEKL
Sbjct: 1 MAHTLDSQQPAVPVRNFQINFGPQHPAAHGVLRMVLELNGEVVERVDPHIGLLHRGTEKL 60
Query: 327 AEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNH 386
E +TYLQ++PY DRLDY + M EHA+ +A+E+L I++P R Q IRV++ EI RLL+H
Sbjct: 61 IEAKTYLQAVPYFDRLDYCAPMNQEHAFCLAVERLAGIEVPKRGQLIRVLYSEIGRLLSH 120
Query: 387 LMWIGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQY 446
L+ + + ++D+GA+ L+ F RE L+ YE SG+RMHAAY+RPGGV++DLP+
Sbjct: 121 LLNVTTFAMDVGALTPPLWGFEAREKLMMFYERASGSRMHAAYFRPGGVHQDLPQ----- 175
Query: 447 KSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVV 506
L++ I +F FP +D+ + L+T NRI+KQR V IGVV
Sbjct: 176 --------------------KLVEDIGEFCRTFPSLLDDLDALVTGNRIFKQRTVDIGVV 215
Query: 507 SPERALSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMR 566
+ E AL+ GF+G M+RGSG WDLR+ QPYE Y+ L+FDIPIGK+GD YDRY+VR+EEMR
Sbjct: 216 TLEDALAWGFSGVMVRGSGAPWDLRRAQPYECYSELDFDIPIGKHGDCYDRYVVRMEEMR 275
Query: 567 QSNKIIKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEI 626
QSNKI+ QC+ L GPV S + K++ P R MK +ME LIHHFKL+TEGF+VP GE+
Sbjct: 276 QSNKIMLQCVDRLLKEAGPVASTDRKVSPPKRGEMKRSMEALIHHFKLYTEGFHVPEGEV 335
Query: 627 YSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDI 686
Y+ VE PKGEFG+YLV DG NKPYR KIR+PGFAHLQS+ + GHM++DV ++G+ DI
Sbjct: 336 YAAVEAPKGEFGVYLVGDGTNKPYRCKIRAPGFAHLQSMDFLCRGHMLADVSAVLGSLDI 395
Query: 687 VFGEIDR 693
VFGE+DR
Sbjct: 396 VFGEVDR 402
>gi|146322982|ref|XP_755704.2| NADH-ubiquinone oxidoreductase 49 kDa subunit [Aspergillus
fumigatus Af293]
gi|129558557|gb|EAL93666.2| NADH-ubiquinone oxidoreductase 49 kDa subunit, putative
[Aspergillus fumigatus Af293]
gi|159129761|gb|EDP54875.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, putative
[Aspergillus fumigatus A1163]
Length = 470
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 239/415 (57%), Positives = 298/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E +TY+Q+LPY
Sbjct: 83 KIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYMQALPY 142
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLNI+IP RA++IR MF EITR+LNHLM + SH++D+G
Sbjct: 143 FDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKWIRTMFGEITRILNHLMSVLSHAMDVG 202
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV +DLP
Sbjct: 203 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDLPL----------------- 245
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E LLTDNRIWK R G+GVV+ A++M FTG
Sbjct: 246 --------GLLDDIYQWATQFGDRIDETEELLTDNRIWKARTQGVGVVTAADAINMSFTG 297
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y+ + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 298 VMLRGSGVPWDIRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNK 357
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + KI+ P R MK NME LIHHF LFT+G+ VP GE YS +E PKGE G
Sbjct: 358 MPA--GPVRVEDYKISPPPRAAMKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMG 415
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG+ +PYR KIR+PGFAHL ++ GH+++D V IIGT D+VFGE+DR
Sbjct: 416 VYLVSDGSERPYRCKIRAPGFAHLSGFDQISRGHLLADAVAIIGTMDLVFGEVDR 470
>gi|379019171|ref|YP_005295405.1| NADH dehydrogenase subunit D [Rickettsia rickettsii str. Hlp#2]
gi|376331751|gb|AFB28985.1| NADH dehydrogenase subunit D [Rickettsia rickettsii str. Hlp#2]
Length = 391
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 237/413 (57%), Positives = 301/413 (72%), Gaps = 27/413 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
K+ LN GPQHPA HGVLRLILE++GEVV ADPHIGLLHR TEKL E +TYLQ++PY D
Sbjct: 6 KTITLNLGPQHPATHGVLRLILEMDGEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFD 65
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYVS MC EHA+ +A+E LL ++P RAQ+IRV+F E+TR+LNH + IGS +LDIGA
Sbjct: 66 RLDYVSPMCQEHAFALAVESLLECEVPRRAQFIRVLFSELTRILNHTLNIGSQALDIGAT 125
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
LL+ F ERE +++ YE VSG+RMH+ Y+RPGGV DLPE
Sbjct: 126 TPLLWLFEEREKIMEFYEHVSGSRMHSNYFRPGGVVADLPE------------------- 166
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
LL+ I+ F +FP + + E+LL +NR+WKQRLV IGVVS + A+ GF+GPM
Sbjct: 167 ------GLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVVSQKEAMDWGFSGPM 220
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
LRGSG+ WDLRK PY++Y+ ++F +PIGKNGD YDRY VR+ EM +S KIIKQCI+ +
Sbjct: 221 LRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQCIE--K 278
Query: 581 SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIY 640
KG + +++ K+T P R MK +ME +IHHFKL+TEG+ VP GE Y VE PKGEFG+Y
Sbjct: 279 MPKGAIKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGEFGVY 338
Query: 641 LVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
L S G N+PYR +I++PGFAHLQ L M GH+++DV+TII T DIVFGEIDR
Sbjct: 339 LYSRGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITIIATLDIVFGEIDR 391
>gi|384263105|ref|YP_005418293.1| NADH-quinone oxidoreductase subunit D [Rhodospirillum photometricum
DSM 122]
gi|378404207|emb|CCG09323.1| NADH-quinone oxidoreductase subunit D [Rhodospirillum photometricum
DSM 122]
Length = 391
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 242/415 (58%), Positives = 301/415 (72%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIKSY +NFGPQHPAAHGVLRL+LEL GE+V +ADPHIGLLHR TEKL E ++Y+Q++PY
Sbjct: 4 EIKSYTMNFGPQHPAAHGVLRLVLELSGEIVERADPHIGLLHRGTEKLIEHKSYVQAIPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDY + EHA+V+A+EKLL I++P RAQY+R +F+EITR++NH+M S +LD+G
Sbjct: 64 FDRLDYACPLNQEHAFVLAVEKLLGIEVPPRAQYLRTLFNEITRIINHIMNTTSMALDVG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM LLY F +RE LL+ E SGARMHAA++RPGGV RD+P
Sbjct: 124 AMTPLLYGFEQREHLLEFSERASGARMHAAWFRPGGVARDVPT----------------- 166
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I F + FP +D+ E LL DNRI+KQR V IG V+ E+AL GFTG
Sbjct: 167 --------DLLDDILKFCDGFPAYLDDVEALLDDNRIFKQRTVDIGKVTVEQALDWGFTG 218
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
P+LRG GV WDLRK QPY+ Y ++FDIP G NGD YDRYLVR+ E RQS +II+QCI+
Sbjct: 219 PVLRGCGVPWDLRKAQPYDAYADMDFDIPTGANGDCYDRYLVRMAEQRQSLRIIRQCIE- 277
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ GPV + ++K+T P R MK++ME LIHHFKLFTEG VP GE Y+ VE GEFG
Sbjct: 278 -KMPDGPVKTQDHKVTPPPRAAMKNSMEALIHHFKLFTEGVRVPAGETYTAVEAATGEFG 336
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++LVSDG++KPYR KIRSPG+ HLQ L M GHM++DVV IG+ D+VFGEIDR
Sbjct: 337 VFLVSDGSSKPYRCKIRSPGYVHLQGLDLMSRGHMLADVVANIGSIDVVFGEIDR 391
>gi|350273423|ref|YP_004884736.1| NADH dehydrogenase subunit delta [Rickettsia japonica YH]
gi|348592636|dbj|BAK96597.1| NADH dehydrogenase delta subunit [Rickettsia japonica YH]
Length = 422
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 238/422 (56%), Positives = 303/422 (71%), Gaps = 27/422 (6%)
Query: 272 RKDFPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRT 331
RK+ K+ LN GPQHPA HGVLRLILE++GEVV ADPHIGLLHR TEKL E +T
Sbjct: 28 RKNTMTNNTKTITLNLGPQHPATHGVLRLILEMDGEVVNNADPHIGLLHRGTEKLIEHKT 87
Query: 332 YLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIG 391
YLQ++PY DRLDYVS MC EHA+ +A+E LL ++P RA++IRV+F E+TR+LNH + IG
Sbjct: 88 YLQAIPYFDRLDYVSPMCQEHAFALAVESLLECEVPRRAKFIRVLFSELTRILNHTLNIG 147
Query: 392 SHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSII 451
S +LDIGA LL+ F ERE +++ YE VSG+RMH+ Y+RPGGV DLPE
Sbjct: 148 SQALDIGATTPLLWLFEEREKIMEFYEHVSGSRMHSNYFRPGGVAADLPE---------- 197
Query: 452 RNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERA 511
LL+ I+ F +FP + + E+LL +NR+WKQRLV IGV S + A
Sbjct: 198 ---------------GLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVASQKEA 242
Query: 512 LSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKI 571
+ GF+GPMLRGSG+ WDLRK PY++Y+ ++F +PIGKNGD YDRY VR+ EM +S KI
Sbjct: 243 MDWGFSGPMLRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKI 302
Query: 572 IKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVE 631
IKQCI+ + KG V +++ K+T P R MK +ME +IHHFKL+TEG+ VP GE Y VE
Sbjct: 303 IKQCIE--KMPKGAVKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVE 360
Query: 632 HPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEI 691
PKGEFG+YL S G N+PYR +I++PGFAHLQ L M GH+++DV+TII T DIVFGEI
Sbjct: 361 APKGEFGVYLYSQGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITIIATLDIVFGEI 420
Query: 692 DR 693
DR
Sbjct: 421 DR 422
>gi|314908354|gb|ADT62124.1| NADH dehydrogenase subunit 7 [Isoetes engelmannii]
Length = 396
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 240/415 (57%), Positives = 305/415 (73%), Gaps = 28/415 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
I ++ LNFGPQHPAAHGVLRL+LE++GE+V +A+PHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 9 IDNFTLNFGPQHPAAHGVLRLVLEMDGELVERAEPHIGLLHRGTEKLIEYKTYLQALPYF 68
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMM EHAY +A+E+L N ++P+RAQYIRV+F EITR+LNHL+ + +H++D+GA
Sbjct: 69 DRLDYVSMMAQEHAYSLAVERLCNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMDVGA 128
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+AF ERE L + YE VSGARMHA+Y RPGGV +DLP
Sbjct: 129 LTPFLWAFEEREKLFEFYERVSGARMHASYVRPGGVAQDLP------------------- 169
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L + I FT F IDE E +LT+NRIWKQRLV IG+V+ E AL GF+G
Sbjct: 170 ------SGLSEDIFLFTQEFASRIDELEEMLTNNRIWKQRLVDIGIVTAEEALDWGFSGV 223
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSGV WDLRK PY++Y+LL+FD+P+G GD YDRY +RIEEMR+S +I+ QC+ +
Sbjct: 224 MLRGSGVCWDLRKAAPYDVYDLLDFDVPVGTRGDCYDRYRIRIEEMRESLRIMVQCLNKM 283
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLG-EIYSCVEHPKGEFG 638
S G + +++ K+ P+R MK +ME LIHHFK +TE F VP Y+ VE PKGEFG
Sbjct: 284 PS--GMIKADDCKLCPPSRSEMKQSMESLIHHFKHYTECFSVPASPPTYAAVEAPKGEFG 341
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++LVS+G N+PYR +IR+PGFAHLQ L M HM++DVVTIIGTQDIVFGE+DR
Sbjct: 342 VFLVSNGTNRPYRCRIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 396
>gi|119189171|ref|XP_001245192.1| hypothetical protein CIMG_04633 [Coccidioides immitis RS]
gi|303323291|ref|XP_003071637.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor, putative [Coccidioides posadasii C735 delta
SOWgp]
gi|240111339|gb|EER29492.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor, putative [Coccidioides posadasii C735 delta
SOWgp]
gi|320035277|gb|EFW17219.1| NADH dehydrogenase subunit D [Coccidioides posadasii str. Silveira]
gi|392868090|gb|EAS33832.2| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
[Coccidioides immitis RS]
Length = 471
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 241/415 (58%), Positives = 298/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E +TYLQ+LPY
Sbjct: 84 KIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYLQALPY 143
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE Y +A+EKLLNI+IP RA++IR +F EITR+LNHLM + SH++D+G
Sbjct: 144 FDRLDYVSMMTNEQCYSLAVEKLLNIEIPERAKWIRTLFGEITRILNHLMSVLSHAMDVG 203
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV++D+P
Sbjct: 204 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPL----------------- 246
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E LLTDNRIWK R GIGVVS AL+ GFTG
Sbjct: 247 --------GLLDDIYQWATQFGDRIDETEELLTDNRIWKARTQGIGVVSAADALNFGFTG 298
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y+ + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 299 VMLRGSGVPWDIRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNK 358
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + KI P R MK NME LIHHF LFT+G+ VP GE YS +E PKGE G
Sbjct: 359 MPA--GPVRVEDYKINPPPRAAMKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMG 416
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDG+ +PYR KIR+PGFAHL ++ GH+++D V IIGT D+VFGE+DR
Sbjct: 417 VYIVSDGSERPYRCKIRAPGFAHLGCFDQISRGHLLADAVAIIGTMDLVFGEVDR 471
>gi|330813985|ref|YP_004358224.1| NADH-ubiquinone oxidoreductase subunit D [Candidatus Pelagibacter
sp. IMCC9063]
gi|327487080|gb|AEA81485.1| NADH-ubiquinone oxidoreductase chain D [Candidatus Pelagibacter sp.
IMCC9063]
Length = 391
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 240/413 (58%), Positives = 305/413 (73%), Gaps = 27/413 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
K+ LNFGPQHPAAHGVLRLILEL+GEV+ +ADPHIGLLHR TEKL E +TY Q++PY D
Sbjct: 6 KTMNLNFGPQHPAAHGVLRLILELDGEVIERADPHIGLLHRGTEKLIEHKTYTQAIPYFD 65
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYV+ M EHA+ MA+EKLL I++PIRAQYIRV+F EI R+L+H++ I + +LD+GA+
Sbjct: 66 RLDYVAPMNQEHAFAMAVEKLLKIEVPIRAQYIRVVFCEIGRILSHILNITTQALDVGAL 125
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
L+ F ERE L+ YE VSG+R+HA Y+RPGGV+ DLP
Sbjct: 126 TPSLWGFEEREKLMVFYERVSGSRLHANYFRPGGVHIDLPT------------------- 166
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
L D I F FP I++ ETLLTDNRI+KQR V IG+VS + AL GF+G M
Sbjct: 167 ------GLADDIYKFCETFPDVINDLETLLTDNRIFKQRNVDIGIVSKQEALDHGFSGVM 220
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
LRGSGV WDLRK PYE YN +F IP+GKNGD YDRYL RIEEM++S I+KQ ++ +
Sbjct: 221 LRGSGVPWDLRKSNPYECYNEFDFKIPVGKNGDCYDRYLCRIEEMKESISIMKQALQ--K 278
Query: 581 SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIY 640
+GPV++ N K+ P R MK +ME LI+HFKL+TEG++VP GE+Y+ VE PKGEFG+Y
Sbjct: 279 MPEGPVMTANTKVGPPKRKEMKMSMEALINHFKLYTEGYHVPKGEVYTAVEAPKGEFGVY 338
Query: 641 LVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
LVSDG+NKPYR KI++PGF HLQ+++ MI GHM++DV ++G+ DIVFGE+DR
Sbjct: 339 LVSDGSNKPYRCKIKAPGFTHLQAMNYMIKGHMLADVPAVLGSMDIVFGEVDR 391
>gi|57239170|ref|YP_180306.1| NADH dehydrogenase subunit D [Ehrlichia ruminantium str.
Welgevonden]
gi|58579126|ref|YP_197338.1| NADH dehydrogenase subunit D [Ehrlichia ruminantium str.
Welgevonden]
gi|81672806|sp|Q5HB88.1|NUOD_EHRRW RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|57161249|emb|CAH58168.1| NADH-quinone oxidoreductase chain D [Ehrlichia ruminantium str.
Welgevonden]
gi|58417752|emb|CAI26956.1| NADH-quinone oxidoreductase chain D [Ehrlichia ruminantium str.
Welgevonden]
Length = 393
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 240/416 (57%), Positives = 303/416 (72%), Gaps = 27/416 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
++I LNFGPQHPAAHGV+RL+LE+ GEV+ + DPHIGLLHR TEKL E +TYLQ+LP
Sbjct: 5 VKITPMTLNFGPQHPAAHGVMRLVLEMGGEVIERIDPHIGLLHRGTEKLIEYKTYLQALP 64
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y DRLDYVS M EHAY + +EKLL ++PIRA+Y+RV+F E+TR+LNHL+ I S +LDI
Sbjct: 65 YFDRLDYVSPMAQEHAYSLCVEKLLKCEVPIRAKYLRVIFCELTRILNHLLNISSQALDI 124
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GAM LL+ F ERE +L+ YE SGAR H+AY RPGGV D+PE
Sbjct: 125 GAMTPLLWMFEEREKILNFYERASGARFHSAYIRPGGVAADIPE---------------- 168
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
L+ I F N FPK +D+ ++LLT+NRIWKQR V IGVVS ++AL+ GF+
Sbjct: 169 ---------DLIHDIFQFVNTFPKFMDDVDSLLTENRIWKQRNVDIGVVSKKQALNWGFS 219
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GPMLR G+ WDLRK QPYEIY+ L F IPIG+ GD YDRYLVR+ E+R+S ++++QC+
Sbjct: 220 GPMLRACGIPWDLRKSQPYEIYDELEFKIPIGEKGDCYDRYLVRMAEIRESIRLVEQCLN 279
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
R GPV +++ KI P R MK +ME LIHHFKL++EG+ VP GE Y VE PKGEF
Sbjct: 280 --RIPDGPVKTDDRKIAPPKRSEMKKSMEALIHHFKLYSEGYSVPAGETYMAVEAPKGEF 337
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+Y+VSDG NKPYR +IR+PGFAHLQ++ M GHM++D+ IIG+ DIVFGEIDR
Sbjct: 338 GVYIVSDGTNKPYRCRIRAPGFAHLQAIDMMAKGHMLADLTAIIGSLDIVFGEIDR 393
>gi|144899468|emb|CAM76332.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Magnetospirillum
gryphiswaldense MSR-1]
Length = 392
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 240/415 (57%), Positives = 302/415 (72%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IKSY +NFGPQHPAAHGVLRLILE+ GE V +ADPHIGLLHR TEKL E + Y Q+ PY
Sbjct: 5 QIKSYNINFGPQHPAAHGVLRLILEMSGETVDRADPHIGLLHRGTEKLIEHKIYTQATPY 64
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV M EHA+VMA EKLL + +P+R QYIRV++ E+ R+LNH++ I S D+G
Sbjct: 65 FDRLDYVGTMNQEHAFVMAAEKLLGVTVPLRGQYIRVLYCEMGRILNHILNICSFVFDVG 124
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
M +L+ F ERE L++ YE GAR+HA Y+R GGV +DLP
Sbjct: 125 GMTPMLWGFEEREKLMEFYERACGARLHANYFRVGGVAQDLP------------------ 166
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LL+ I+ + +++PK ID+ ETL+T+NRI+KQR V IG VS E+AL GFTG
Sbjct: 167 -------AGLLEDIDAWCDQYPKVIDDIETLVTENRIFKQRTVDIGTVSAEQALDWGFTG 219
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
P LR SG+ WDLRK QPYE+Y+ ++FDIP+GK GD YDRYL+RI EMR+S KI+KQCI+
Sbjct: 220 PNLRASGIAWDLRKSQPYEVYDRMDFDIPVGKVGDCYDRYLIRIIEMRESVKIMKQCIRE 279
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ S GPV ++ K++ P R MK +ME LIHHFKLFTEGF+VP GE+Y+ VE PKGEF
Sbjct: 280 MPS--GPVKVDDRKVSPPPRAEMKQSMEALIHHFKLFTEGFHVPAGEVYAAVEAPKGEFA 337
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLV+DG+NKPYR KIR PG+ HLQ+L M GHM++DVV IG+ DIVFGEIDR
Sbjct: 338 VYLVADGSNKPYRCKIRPPGYVHLQALDMMSKGHMLADVVANIGSIDIVFGEIDR 392
>gi|315044491|ref|XP_003171621.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS
118893]
gi|311343964|gb|EFR03167.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS
118893]
Length = 473
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 237/415 (57%), Positives = 299/415 (72%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E +TY+Q+LPY
Sbjct: 86 KIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYMQALPY 145
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLNI+IP RA++IR +F EITR+LNHLM + SH++D+G
Sbjct: 146 FDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKWIRTLFGEITRILNHLMSVLSHAMDVG 205
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV++D+P
Sbjct: 206 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPV----------------- 248
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E LLTDNRIWK R VG+GVV+ AL+ GF+G
Sbjct: 249 --------GLLDDIYQWATQFSDRIDETEELLTDNRIWKARTVGVGVVTAAEALNYGFSG 300
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 301 VMLRGSGVPWDIRKSQPYDAYGQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNK 360
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + KI+ P RI MK NME LIHHF LFT+G+ VP GE YS +E PKGE
Sbjct: 361 IPA--GPVRVEDYKISPPPRIAMKENMEALIHHFLLFTKGYTVPPGETYSAIEAPKGEMA 418
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++LVSDG+ +PYR KIR+PGFAHL ++ GH+++D V IIGT D+VFGE+DR
Sbjct: 419 VFLVSDGSERPYRCKIRAPGFAHLGCFDQLSRGHLLADAVAIIGTMDLVFGEVDR 473
>gi|157825613|ref|YP_001493333.1| NADH dehydrogenase subunit D [Rickettsia akari str. Hartford]
gi|157799571|gb|ABV74825.1| NADH dehydrogenase subunit D [Rickettsia akari str. Hartford]
Length = 394
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 237/413 (57%), Positives = 300/413 (72%), Gaps = 27/413 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
K+ LN GPQHPA HGVLRLILE++GE+V ADPHIGLLHR TEKL E +TYLQ++PY D
Sbjct: 9 KTITLNLGPQHPATHGVLRLILEMDGEIVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFD 68
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYVS MC EHA+ +A+E LL ++P RAQ+IRV+F E+TR+LNH + IGS +LDIGA
Sbjct: 69 RLDYVSPMCQEHAFALAVESLLECEVPRRAQFIRVLFSELTRILNHTLNIGSQALDIGAT 128
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
LL+ F ERE +++ YE VSG+RMH+ Y+RPGGV DLP+
Sbjct: 129 TPLLWLFEEREKIMEFYERVSGSRMHSNYFRPGGVAEDLPD------------------- 169
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
LL+ I+ F ++FP + + E+LL +NR+WKQRLV IGVVS + A+ GF+GPM
Sbjct: 170 ------GLLEDIDKFIDQFPPKLHDIESLLNENRLWKQRLVDIGVVSQKEAMDWGFSGPM 223
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
LRGSG+ WDLRK PY++Y+ + F++PIGKNGD YDRY VR+ EM +S KIIKQCI+ +
Sbjct: 224 LRGSGIAWDLRKSNPYDVYDEMEFEVPIGKNGDCYDRYFVRMLEMYESIKIIKQCIE--K 281
Query: 581 SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIY 640
KG V +N+ K+T P R MK +ME +IHHFKL+T G+ VP GE Y VE PKGEFG+Y
Sbjct: 282 MPKGAVKTNDPKLTPPTRAKMKESMEAMIHHFKLYTAGYDVPAGETYKAVEAPKGEFGVY 341
Query: 641 LVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
L S G N PYR +I+SPGFAHLQ L M GH+++DV+TII T DIVFGEIDR
Sbjct: 342 LYSQGVNIPYRCRIKSPGFAHLQGLDFMSKGHLMADVITIIATLDIVFGEIDR 394
>gi|157803905|ref|YP_001492454.1| NADH dehydrogenase subunit D [Rickettsia canadensis str. McKiel]
gi|157785168|gb|ABV73669.1| NADH dehydrogenase delta subunit [Rickettsia canadensis str.
McKiel]
Length = 395
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 238/414 (57%), Positives = 302/414 (72%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
IK+ LN GPQHPA HGVLRLILE++GEVV DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 9 IKTITLNLGPQHPATHGVLRLILEMDGEVVNNTDPHIGLLHRGTEKLIEHKTYLQAIPYF 68
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVS MC EHA+ +A+E LL ++P RAQ+IRV+F E+TR+LNH + IGS +LDIGA
Sbjct: 69 DRLDYVSPMCQEHAFALAVESLLKCEVPRRAQFIRVLFSELTRILNHTLNIGSQALDIGA 128
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
LL+ F ERE +++ YE VSG+RMH+ Y+RPGGV DLP+
Sbjct: 129 TTPLLWLFEEREKIMEFYERVSGSRMHSNYFRPGGVAEDLPD------------------ 170
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LL+ I+ F +F + + E+LL +NR+WKQRLV IGVV + A+ GF+GP
Sbjct: 171 -------GLLEDIDKFIEQFHPKLQDVESLLNENRLWKQRLVDIGVVLQQEAMEWGFSGP 223
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG+ WDLRK PY++Y+ ++F++PIGKNGD YDRYLVRI EM +S KIIKQCI+
Sbjct: 224 MLRGSGIAWDLRKSNPYDVYDEIDFEVPIGKNGDCYDRYLVRILEMYESIKIIKQCIE-- 281
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ KG V +N+ K+T P R MK +ME +IHHFKL+TEG+ VP GE Y VE PKGEFG+
Sbjct: 282 KMPKGAVKTNDPKLTPPTRAKMKESMEAMIHHFKLYTEGYEVPAGETYKAVEAPKGEFGV 341
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YL S G N+PYR +I++PGFAHLQ L+ M GH+++DV+TII T DIVFGEIDR
Sbjct: 342 YLYSIGNNQPYRCRIKTPGFAHLQGLNFMSKGHLMADVITIIATLDIVFGEIDR 395
>gi|58617180|ref|YP_196379.1| NADH dehydrogenase subunit D [Ehrlichia ruminantium str. Gardel]
gi|75507498|sp|Q5FGV3.1|NUOD_EHRRG RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|58416792|emb|CAI27905.1| NADH-quinone oxidoreductase chain D [Ehrlichia ruminantium str.
Gardel]
Length = 393
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 240/416 (57%), Positives = 302/416 (72%), Gaps = 27/416 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
++I LNFGPQHPAAHGV+RL+LE+ GEV+ + DPHIGLLHR TEKL E +TYLQ+LP
Sbjct: 5 VKITPMTLNFGPQHPAAHGVMRLVLEMGGEVIERIDPHIGLLHRGTEKLIEYKTYLQALP 64
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y DRLDYVS M EHAY + +EKLL ++PIRA+Y+RV+F E+TR+LNHL+ I S +LDI
Sbjct: 65 YFDRLDYVSPMAQEHAYSLCVEKLLKCEVPIRAKYLRVIFCELTRILNHLLNISSQALDI 124
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GAM LL+ F ERE +L+ YE SGAR H+AY RPGGV D+PE
Sbjct: 125 GAMTPLLWMFEEREKILNFYERASGARFHSAYIRPGGVAADIPE---------------- 168
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
L+ I F N FPK +D+ ++LLT+NRIWKQR V IGVVS ++AL+ GF+
Sbjct: 169 ---------DLIHDIFQFVNTFPKFMDDVDSLLTENRIWKQRNVDIGVVSKKQALNWGFS 219
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GPMLR G+ WDLRK QPYEIY+ L F IPIG+ GD YDRYLVR+ E+R+S +++QC+
Sbjct: 220 GPMLRACGIPWDLRKSQPYEIYDELEFKIPIGEKGDCYDRYLVRMAEIRESISLVEQCLN 279
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
R GPV +++ KI P R MK +ME LIHHFKL++EG+ VP GE Y VE PKGEF
Sbjct: 280 --RIPDGPVKTDDRKIAPPKRSEMKKSMEALIHHFKLYSEGYIVPAGETYMAVEAPKGEF 337
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+Y+VSDG NKPYR +IR+PGFAHLQ++ M GHM++D+ IIG+ DIVFGEIDR
Sbjct: 338 GVYIVSDGTNKPYRCRIRAPGFAHLQAIDMMAKGHMLADLTAIIGSLDIVFGEIDR 393
>gi|218534460|sp|A8GN50.2|NUOD_RICAH RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
Length = 391
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 237/413 (57%), Positives = 300/413 (72%), Gaps = 27/413 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
K+ LN GPQHPA HGVLRLILE++GE+V ADPHIGLLHR TEKL E +TYLQ++PY D
Sbjct: 6 KTITLNLGPQHPATHGVLRLILEMDGEIVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFD 65
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYVS MC EHA+ +A+E LL ++P RAQ+IRV+F E+TR+LNH + IGS +LDIGA
Sbjct: 66 RLDYVSPMCQEHAFALAVESLLECEVPRRAQFIRVLFSELTRILNHTLNIGSQALDIGAT 125
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
LL+ F ERE +++ YE VSG+RMH+ Y+RPGGV DLP+
Sbjct: 126 TPLLWLFEEREKIMEFYERVSGSRMHSNYFRPGGVAEDLPD------------------- 166
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
LL+ I+ F ++FP + + E+LL +NR+WKQRLV IGVVS + A+ GF+GPM
Sbjct: 167 ------GLLEDIDKFIDQFPPKLHDIESLLNENRLWKQRLVDIGVVSQKEAMDWGFSGPM 220
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
LRGSG+ WDLRK PY++Y+ + F++PIGKNGD YDRY VR+ EM +S KIIKQCI+ +
Sbjct: 221 LRGSGIAWDLRKSNPYDVYDEMEFEVPIGKNGDCYDRYFVRMLEMYESIKIIKQCIE--K 278
Query: 581 SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIY 640
KG V +N+ K+T P R MK +ME +IHHFKL+T G+ VP GE Y VE PKGEFG+Y
Sbjct: 279 MPKGAVKTNDPKLTPPTRAKMKESMEAMIHHFKLYTAGYDVPAGETYKAVEAPKGEFGVY 338
Query: 641 LVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
L S G N PYR +I+SPGFAHLQ L M GH+++DV+TII T DIVFGEIDR
Sbjct: 339 LYSQGVNIPYRCRIKSPGFAHLQGLDFMSKGHLMADVITIIATLDIVFGEIDR 391
>gi|161723847|ref|NP_360119.2| NADH dehydrogenase subunit D [Rickettsia conorii str. Malish 7]
gi|147705285|sp|Q92ID8.2|NUOD_RICCN RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
Length = 391
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 236/413 (57%), Positives = 300/413 (72%), Gaps = 27/413 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
K+ LN GPQHPA HGVLRLILE++GEVV ADPHIGLLHR TEKL E +TYLQ++PY D
Sbjct: 6 KTITLNIGPQHPATHGVLRLILEMDGEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFD 65
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYVS MC EHA+ +A+E LL ++P RAQ+IRV+F E+TR+LNH + IGS +LDIGA
Sbjct: 66 RLDYVSPMCQEHAFALAVESLLECEVPRRAQFIRVLFSELTRILNHTLNIGSQALDIGAT 125
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
LL+ F ERE +++ YE VSG+RMH+ Y+RPGGV DLPE
Sbjct: 126 TPLLWLFEEREKIMEFYEHVSGSRMHSNYFRPGGVAADLPE------------------- 166
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
LL+ I+ F +FP + + E+LL +NR+WKQRLV IGV S + A+ GF+GPM
Sbjct: 167 ------GLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVASQKEAMDWGFSGPM 220
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
LRGSG+ WDLRK PY++Y+ ++F +PIGKNGD YDRY VR+ EM +S KIIKQCI+ +
Sbjct: 221 LRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQCIE--K 278
Query: 581 SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIY 640
KG + +++ K+T P R MK +ME +IHHFKL+TEG+ VP GE Y VE PKGEFG+Y
Sbjct: 279 MPKGAIKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGEFGVY 338
Query: 641 LVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
L S G N+PYR +I++PGFAHLQ L M GH+++DV+TII T DIVFGEIDR
Sbjct: 339 LYSQGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITIIATLDIVFGEIDR 391
>gi|379023054|ref|YP_005299715.1| NADH dehydrogenase subunit D [Rickettsia canadensis str. CA410]
gi|218534457|sp|A8EZ86.2|NUOD_RICCK RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|376323992|gb|AFB21233.1| NADH dehydrogenase subunit D [Rickettsia canadensis str. CA410]
Length = 391
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 238/414 (57%), Positives = 302/414 (72%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
IK+ LN GPQHPA HGVLRLILE++GEVV DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 5 IKTITLNLGPQHPATHGVLRLILEMDGEVVNNTDPHIGLLHRGTEKLIEHKTYLQAIPYF 64
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVS MC EHA+ +A+E LL ++P RAQ+IRV+F E+TR+LNH + IGS +LDIGA
Sbjct: 65 DRLDYVSPMCQEHAFALAVESLLKCEVPRRAQFIRVLFSELTRILNHTLNIGSQALDIGA 124
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
LL+ F ERE +++ YE VSG+RMH+ Y+RPGGV DLP+
Sbjct: 125 TTPLLWLFEEREKIMEFYERVSGSRMHSNYFRPGGVAEDLPD------------------ 166
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LL+ I+ F +F + + E+LL +NR+WKQRLV IGVV + A+ GF+GP
Sbjct: 167 -------GLLEDIDKFIEQFHPKLQDVESLLNENRLWKQRLVDIGVVLQQEAMEWGFSGP 219
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG+ WDLRK PY++Y+ ++F++PIGKNGD YDRYLVRI EM +S KIIKQCI+
Sbjct: 220 MLRGSGIAWDLRKSNPYDVYDEIDFEVPIGKNGDCYDRYLVRILEMYESIKIIKQCIE-- 277
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ KG V +N+ K+T P R MK +ME +IHHFKL+TEG+ VP GE Y VE PKGEFG+
Sbjct: 278 KMPKGAVKTNDPKLTPPTRAKMKESMEAMIHHFKLYTEGYEVPAGETYKAVEAPKGEFGV 337
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YL S G N+PYR +I++PGFAHLQ L+ M GH+++DV+TII T DIVFGEIDR
Sbjct: 338 YLYSIGNNQPYRCRIKTPGFAHLQGLNFMSKGHLMADVITIIATLDIVFGEIDR 391
>gi|374319188|ref|YP_005065687.1| NADH dehydrogenase I subunit D [Rickettsia slovaca 13-B]
gi|383751134|ref|YP_005426235.1| NADH dehydrogenase subunit D [Rickettsia slovaca str. D-CWPP]
gi|360041737|gb|AEV92119.1| NADH dehydrogenase I chain D [Rickettsia slovaca 13-B]
gi|379774148|gb|AFD19504.1| NADH dehydrogenase subunit D [Rickettsia slovaca str. D-CWPP]
Length = 391
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 236/413 (57%), Positives = 300/413 (72%), Gaps = 27/413 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
K+ LN GPQHPA HGVLRLILE++GEVV ADPHIGLLHR TEKL E +TYLQ++PY D
Sbjct: 6 KTITLNLGPQHPATHGVLRLILEMDGEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFD 65
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYVS MC EHA+ +A+E LL ++P RAQ+IRV+F E+TR+LNH + IGS +LDIGA
Sbjct: 66 RLDYVSPMCQEHAFALAVESLLECEVPRRAQFIRVLFSELTRILNHTLNIGSQALDIGAT 125
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
LL+ F ERE +++ YE VSG+RMH+ Y+RPGGV DLPE
Sbjct: 126 TPLLWLFEEREKIMEFYEHVSGSRMHSNYFRPGGVAADLPE------------------- 166
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
LL+ I+ F +FP + + E+LL +NR+WKQRLV IGV S + A+ GF+GPM
Sbjct: 167 ------GLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVASQKEAMDWGFSGPM 220
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
LRGSG+ WDLRK PY++Y+ ++F +PIGKNGD YDRY VR+ EM +S KIIKQCI+ +
Sbjct: 221 LRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQCIE--K 278
Query: 581 SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIY 640
KG + +++ K+T P R MK +ME +IHHFKL+TEG+ VP GE Y VE PKGEFG+Y
Sbjct: 279 MPKGAIKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGEFGVY 338
Query: 641 LVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
L S G N+PYR +I++PGFAHLQ L M GH+++DV+TII T DIVFGEIDR
Sbjct: 339 LYSQGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITIIATLDIVFGEIDR 391
>gi|379712234|ref|YP_005300573.1| NADH dehydrogenase subunit D [Rickettsia philipii str. 364D]
gi|376328879|gb|AFB26116.1| NADH dehydrogenase subunit D [Rickettsia philipii str. 364D]
Length = 391
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 236/413 (57%), Positives = 301/413 (72%), Gaps = 27/413 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
K+ LN GPQHPA HGVLRLILE++GEVV ADPHIGLLHR TEKL E +TYLQ++PY D
Sbjct: 6 KTITLNLGPQHPATHGVLRLILEMDGEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFD 65
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYV+ MC EHA+ +A+E LL ++P RAQ+IRV+F E+TR+LNH + IGS +LDIGA
Sbjct: 66 RLDYVAPMCQEHAFALAVESLLECEVPRRAQFIRVLFSELTRILNHTLNIGSQALDIGAT 125
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
LL+ F ERE +++ YE VSG+RMH+ Y+RPGGV DLPE
Sbjct: 126 TPLLWLFEEREKIMEFYEHVSGSRMHSNYFRPGGVVADLPE------------------- 166
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
LL+ I+ F +FP + + E+LL +NR+WKQRLV IGVVS + A+ GF+GPM
Sbjct: 167 ------GLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVVSQKEAMDWGFSGPM 220
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
LRGSG+ WDLRK PY++Y+ ++F +PIGKNGD YDRY VR+ EM +S KIIKQCI+ +
Sbjct: 221 LRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQCIE--K 278
Query: 581 SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIY 640
KG + +++ K+T P R MK +ME +IHHFKL+TEG+ VP GE Y VE PKGEFG+Y
Sbjct: 279 MPKGAIKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGEFGVY 338
Query: 641 LVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
L S G N+PYR +I++PGFAHLQ L M GH+++DV+TII T DIVFGEIDR
Sbjct: 339 LYSRGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITIIATLDIVFGEIDR 391
>gi|391223970|ref|YP_006460195.1| NADH dehydrogenase subunit 7 (mitochondrion) [Blastocystis sp.
subtype 3]
gi|372861980|gb|AEX98118.1| NADH dehydrogenase subunit 7 (mitochondrion) [Blastocystis sp.
subtype 3]
gi|372862008|gb|AEX98145.1| NADH dehydrogenase subunit 7 (mitochondrion) [Blastocystis sp.
subtype 3]
gi|372862036|gb|AEX98172.1| NADH dehydrogenase subunit 7 (mitochondrion) [Blastocystis sp.
subtype 3]
Length = 393
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 232/415 (55%), Positives = 309/415 (74%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++KS+ LNFGPQHPA HGVLRLILEL GE+V+KADPHIG LHR TEKL E +TYLQ+LPY
Sbjct: 6 QLKSFTLNFGPQHPATHGVLRLILELRGEIVQKADPHIGFLHRGTEKLIENKTYLQALPY 65
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDY++M+ NEH YV+A+EKLL +P+RAQYIRV+F EITR+LNHL+ +GSH+LDIG
Sbjct: 66 FDRLDYIAMLENEHCYVLAVEKLLKCNVPLRAQYIRVIFAEITRILNHLIGLGSHALDIG 125
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+ V+++ F ERE LL+ YE V+GARMHA Y+RPGGV +DLP
Sbjct: 126 STTVIIWLFEEREKLLEFYERVTGARMHANYFRPGGVRQDLP------------------ 167
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L+ + F F + +++ E LLT+NRIW++RLV IGV++ + AL + TG
Sbjct: 168 -------AGFLNDLYIFCVEFNERLNDMEELLTNNRIWRERLVDIGVITKQDALDLNLTG 220
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
+LR +GVKWDLRK PY+ Y+ ++FDIP+G NGD +DRY++RIEEMRQS +II QCI
Sbjct: 221 VLLRSTGVKWDLRKTFPYDAYDKVDFDIPVGTNGDCFDRYVIRIEEMRQSIRIISQCINQ 280
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ ++GP+ S+N KI+ P+++ +K +ME LI HFK+F+EGF V E+Y +E PKGEFG
Sbjct: 281 I--SEGPIKSDNYKISIPSKVQIKQSMESLIDHFKIFSEGFKVEANEVYCSIEAPKGEFG 338
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG+NKPYR ++S GF HLQS+ + GH+I+DV T+IG+ DIVFG+IDR
Sbjct: 339 VYLVSDGSNKPYRCHLKSSGFIHLQSVDYLTRGHLIADVTTVIGSLDIVFGDIDR 393
>gi|224925492|gb|ACN69494.1| NADH-ubiquinone oxidoreductase [Paecilomyces sp. J18]
Length = 474
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 238/415 (57%), Positives = 296/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E +TY+Q+LPY
Sbjct: 87 KIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYMQALPY 146
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE Y +A+EKLLNI++P RA++IR MF EITR+LNHLM + SH++D+G
Sbjct: 147 FDRLDYVSMMTNEQVYSLAVEKLLNIEVPERAKWIRTMFAEITRILNHLMSVLSHAMDVG 206
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGARMHAAY RPGGV +D+P
Sbjct: 207 ALTPFLWGFEEREKLMEFYERVSGARMHAAYVRPGGVSQDIPL----------------- 249
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E LLTDNRIWK R G+GVVS AL+M FTG
Sbjct: 250 --------GLLDDIYQWATQFSDRIDETEELLTDNRIWKARTQGVGVVSAADALNMSFTG 301
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y+ + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 302 VMLRGSGVPWDVRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLN- 360
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ GPV + KI+ P R MK NME LIHHF LF +G+ VP GE Y+ +E PKGE G
Sbjct: 361 -KMPPGPVKVEDYKISPPPRAAMKENMEALIHHFLLFAKGYSVPPGETYTAIEAPKGEMG 419
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDG+ +PYR KIR+PGFAHL ++ GH+++D V IIGT D+VFGE+DR
Sbjct: 420 VYIVSDGSERPYRCKIRAPGFAHLGGFDQVARGHLLADAVAIIGTMDLVFGEVDR 474
>gi|254456097|ref|ZP_05069526.1| NADH dehydrogenase (quinone), D subunit [Candidatus Pelagibacter
sp. HTCC7211]
gi|207083099|gb|EDZ60525.1| NADH dehydrogenase (quinone), D subunit [Candidatus Pelagibacter
sp. HTCC7211]
Length = 391
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 239/415 (57%), Positives = 309/415 (74%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK+ LNFGPQHPAAHGVLRLILEL+GEVV KADPHIGLLHR TEKL E +TY+Q++PY
Sbjct: 4 KIKNLNLNFGPQHPAAHGVLRLILELDGEVVEKADPHIGLLHRGTEKLIENKTYMQAVPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +A+EK+L I +PIRAQYIRV+F EI R+L+H++ + + +LD+G
Sbjct: 64 FDRLDYVAPMNQEHAFALAVEKILEIDVPIRAQYIRVIFCEIGRILSHILNVTTQALDVG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE SG+R+HA Y+R GGV++DLP +
Sbjct: 124 ALTPSLWGFEERETLMTFYERASGSRLHANYFRAGGVHQDLPHGL--------------- 168
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
EN G F FPK ID+ E+LLTDNRI+KQR V IG+V+ E AL F+G
Sbjct: 169 ---ENDIGK-------FCQTFPKIIDDLESLLTDNRIFKQRNVDIGIVTKEDALDYSFSG 218
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSGV WDLRK QPY+ Y+ L+F IP+GKNGD YDRYL RIEEM++S IIKQC+
Sbjct: 219 VMIRGSGVPWDLRKSQPYDCYDQLDFKIPVGKNGDCYDRYLCRIEEMKESVSIIKQCLS- 277
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ KGP+ S + KI+ PA+ ++K +ME LIHHFKLFTEG+ VP EIY+ VE PKGEFG
Sbjct: 278 -KMEKGPIKSLDGKISPPAKKDIKQSMEALIHHFKLFTEGYRVPKDEIYTAVEAPKGEFG 336
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YL+SDG++KPY+ KIR+PGF+HLQS+ +I GHM++DV ++G+ DIVFGE+DR
Sbjct: 337 VYLISDGSSKPYKCKIRAPGFSHLQSMDYLIKGHMLADVPAVLGSLDIVFGEVDR 391
>gi|396471379|ref|XP_003838858.1| similar to NADH-ubiquinone oxidoreductase 49 kDa subunit
[Leptosphaeria maculans JN3]
gi|312215427|emb|CBX95379.1| similar to NADH-ubiquinone oxidoreductase 49 kDa subunit
[Leptosphaeria maculans JN3]
Length = 476
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 240/415 (57%), Positives = 298/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E RTYLQ+LPY
Sbjct: 89 KIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYRTYLQALPY 148
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLNI+IPIRA+YIR MF EITR+LNHLM + SH++D+G
Sbjct: 149 FDRLDYVSMMTNEQCFSLAVEKLLNIEIPIRAKYIRTMFAEITRILNHLMSVLSHAMDVG 208
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV +DLP
Sbjct: 209 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDLPL----------------- 251
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E +LTDNRIW R GIGVVS A++ FTG
Sbjct: 252 --------GLLDDIYQWATQFGDRIDETEEMLTDNRIWLGRTKGIGVVSAADAINYSFTG 303
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y+ + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 304 VMLRGSGVPWDVRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNQ 363
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + KI P R MK NME LIHHF L+++G+ VP GE Y+C+E PKGE G
Sbjct: 364 MPA--GPVKVEDYKIAPPPRAAMKENMEALIHHFLLYSKGYNVPPGETYTCIEAPKGEMG 421
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++LVSDG+ +PYR KIR+PGFAHL + ++ GH+I+D V IIGT D+VFGE+DR
Sbjct: 422 VFLVSDGSERPYRCKIRAPGFAHLSCMDQISRGHLIADAVAIIGTLDLVFGEVDR 476
>gi|365855585|ref|ZP_09395630.1| NADH dehydrogenase subunit D [Acetobacteraceae bacterium AT-5844]
gi|363719012|gb|EHM02331.1| NADH dehydrogenase subunit D [Acetobacteraceae bacterium AT-5844]
Length = 405
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 235/417 (56%), Positives = 305/417 (73%), Gaps = 27/417 (6%)
Query: 277 VIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSL 336
+E S+ +NFGPQHPAAHGVLRLILEL+GEVV +ADPHIGLLHR TEKL E +TYLQ+L
Sbjct: 16 TVEYDSHTINFGPQHPAAHGVLRLILELKGEVVERADPHIGLLHRGTEKLIEHKTYLQAL 75
Query: 337 PYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLD 396
PY DRLDYV+ M EHA+ +A E+LL ++ PIRAQYIRVMF EI+R+LNH++ I +++LD
Sbjct: 76 PYFDRLDYVAPMAQEHAFALATERLLGVEAPIRAQYIRVMFAEISRILNHILNITTYALD 135
Query: 397 IGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKA 456
+GA L+ F +RE LL+ YEA SG+ HA Y RPGGV +D+P
Sbjct: 136 VGATTPSLWGFEQREVLLEIYEAASGSHYHANYVRPGGVAKDIP---------------- 179
Query: 457 TKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGF 516
L++ IE ++ +FP +D+ E LLT NRI+KQR V IG+++ E+A+ GF
Sbjct: 180 ---------AGLIEKIERWSEKFPAFVDDLERLLTGNRIFKQRTVDIGIMTAEQAMEWGF 230
Query: 517 TGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCI 576
+GP +R SG WDLR+ QPY+IY+ L F+IP+G +GD Y+RYLVRI EMR+S+KIIKQCI
Sbjct: 231 SGPCIRASGCAWDLRRSQPYDIYDQLEFEIPVGSHGDCYERYLVRIAEMRESHKIIKQCI 290
Query: 577 KWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
+ + GPV ++KI P R MK +ME LIHHFKL+TEG++VP G YS VE PKGE
Sbjct: 291 QQMPG--GPVKLQDSKIVPPKRGEMKRSMEALIHHFKLYTEGYHVPEGSTYSVVEAPKGE 348
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YLV+DG NKPYR IR+PGFAHLQ++ + GHM++D V++IG+ DIVFGEIDR
Sbjct: 349 FGVYLVADGTNKPYRCHIRAPGFAHLQAMEVLSKGHMLADAVSVIGSLDIVFGEIDR 405
>gi|295689626|ref|YP_003593319.1| NADH dehydrogenase I subunit D [Caulobacter segnis ATCC 21756]
gi|295431529|gb|ADG10701.1| NADH dehydrogenase I, D subunit [Caulobacter segnis ATCC 21756]
Length = 416
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 236/432 (54%), Positives = 306/432 (70%), Gaps = 26/432 (6%)
Query: 262 TDYGFVGHPFRKDFPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHR 321
TDY F P ++ + +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR
Sbjct: 11 TDY-FRDEATAPAIPETPVRKFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHR 69
Query: 322 ATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEIT 381
TEKL E RTYLQ++PY DRLDYV+ M EHA+ +AIEKLL +++PIR Q IRV++ EI
Sbjct: 70 GTEKLMEARTYLQNIPYFDRLDYVAPMNQEHAFCLAIEKLLGVEVPIRGQIIRVLYSEIG 129
Query: 382 RLLNHLMWIGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPE 441
R+LNHL+ + + ++D+GA+ L+ F ERE L+ YE GAR+H+ Y+RPGGV++DLP
Sbjct: 130 RILNHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERACGARLHSNYFRPGGVHQDLPP 189
Query: 442 IMPQYKSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLV 501
L++ I+ + FPK D+ E L+TDNRI+KQR V
Sbjct: 190 -------------------------ELIEDIDAWAKAFPKICDDIEGLITDNRIFKQRNV 224
Query: 502 GIGVVSPERALSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVR 561
IGVV+ E A+ GF+G M+RGSG+ WDLR+ QPYE YN FDIP+GKNGD YDRYL R
Sbjct: 225 DIGVVTKEEAIDWGFSGVMVRGSGIAWDLRRSQPYENYNDFEFDIPLGKNGDCYDRYLCR 284
Query: 562 IEEMRQSNKIIKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYV 621
++EMR+S KII+Q + LR GPV+S +NK++ P R MK +ME LIHHFKL+TEGF
Sbjct: 285 MQEMRESTKIIRQACEMLRKTHGPVLSEDNKVSPPRRAEMKRSMEALIHHFKLYTEGFKT 344
Query: 622 PLGEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTII 681
P GE+Y+CVE PKGEFG+++VSDG NKPYR KIR+PGF HL ++ M GH ++DV I+
Sbjct: 345 PEGEVYACVEAPKGEFGVFVVSDGTNKPYRCKIRAPGFPHLAAMDWMNRGHQLADVSAIL 404
Query: 682 GTQDIVFGEIDR 693
G+ DIVFGEIDR
Sbjct: 405 GSLDIVFGEIDR 416
>gi|67458956|ref|YP_246580.1| NADH dehydrogenase subunit D [Rickettsia felis URRWXCal2]
gi|75536606|sp|Q4UM08.1|NUOD_RICFE RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|67004489|gb|AAY61415.1| NADH dehydrogenase I chain D [Rickettsia felis URRWXCal2]
Length = 391
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 236/413 (57%), Positives = 301/413 (72%), Gaps = 27/413 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
K+ LN GPQHPA HGVLRLILE++GEVV ADPHIGLLHR TEKL E +TYLQ++PY D
Sbjct: 6 KTITLNLGPQHPATHGVLRLILEMDGEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFD 65
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYVS MC EHA+ +A+E LL ++P RAQ+IRV+F E+TR+LNH + IGS +LDIGA
Sbjct: 66 RLDYVSPMCQEHAFALAVESLLECEVPRRAQFIRVLFSELTRILNHTLNIGSQALDIGAT 125
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
LL+ F ERE +++ YE VSG+RMH+ Y+RPGGV DLP+
Sbjct: 126 TPLLWLFEEREKIMEFYERVSGSRMHSNYFRPGGVAEDLPD------------------- 166
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
LL+ I+ F +FP + + E+LL +NR+WKQRLV IGVVS + A+ GF+GPM
Sbjct: 167 ------GLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVVSQKEAMDWGFSGPM 220
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
LRGSG+ WDLRK PY++Y+ ++F +PIGKNGD YDRY VR+ EM +S KIIKQCI+ +
Sbjct: 221 LRGSGIAWDLRKSNPYDVYDEIDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQCIE--K 278
Query: 581 SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIY 640
KG V +++ K+T P R MK +ME +IHHFKL+TEG+ VP GE Y VE PKGEFG+Y
Sbjct: 279 MPKGAVKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGEFGVY 338
Query: 641 LVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
L S G N+PYR +I++PGFAHLQ L + GH+++DV+TII T DIVFGEIDR
Sbjct: 339 LYSQGGNRPYRCRIKAPGFAHLQGLDFISKGHLMADVITIIATLDIVFGEIDR 391
>gi|259487822|tpe|CBF86800.1| TPA: hypothetical protein similar to NADH-ubiquinone oxidoreductase
49 kDa subunit, mitochondrial precursor (Eurofung)
[Aspergillus nidulans FGSC A4]
Length = 475
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 239/415 (57%), Positives = 296/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILE+ GE + +ADPH+GLLHR TEKL E ++Y Q+LPY
Sbjct: 88 KIRHYTVNFGPQHPAAHGVLRLILEINGEEIVRADPHVGLLHRGTEKLIEYKSYFQALPY 147
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE Y +A+EKLLNI+IP RA+YIR MF EITR+LNHLM + SH++D+G
Sbjct: 148 FDRLDYVSMMTNEQCYSLAVEKLLNIEIPERAKYIRTMFGEITRILNHLMSVLSHAMDVG 207
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV +DLP
Sbjct: 208 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDLPL----------------- 250
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E LLTDNRIWK R G+GVVS AL+M FTG
Sbjct: 251 --------GLLDDIYQWATQFGDRIDETEELLTDNRIWKARTQGVGVVSAADALNMSFTG 302
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y+ + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 303 VMLRGSGVPWDIRKSQPYDAYDKVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNQ 362
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + KI P R MK NME LIHHF L+T+G+ VP GE YS +E PKGE G
Sbjct: 363 MPA--GPVRVEDYKIMPPPRAAMKENMEALIHHFLLYTKGYAVPPGETYSAIEAPKGEMG 420
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++LVSDG+ +PYR KIR+PGFAHL ++ GH+++D V IIGT D+VFGE+DR
Sbjct: 421 VFLVSDGSERPYRCKIRAPGFAHLGGFDQIARGHLLADAVAIIGTMDLVFGEVDR 475
>gi|317146852|ref|XP_001821713.2| NADH-ubiquinone oxidoreductase subunit [Aspergillus oryzae RIB40]
Length = 521
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 237/415 (57%), Positives = 298/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILE+ GE + +ADPH+GLLHR TEKL E +TY+Q+LPY
Sbjct: 134 KIRHYTVNFGPQHPAAHGVLRLILEINGEEIVRADPHVGLLHRGTEKLIEYKTYMQALPY 193
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE Y +A+EKLLNI+IP RA+YIR MF E+TR+LNHLM + SH++D+G
Sbjct: 194 FDRLDYVSMMTNEQCYSLAVEKLLNIEIPDRAKYIRTMFGEMTRILNHLMSVLSHAMDVG 253
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV +D+P
Sbjct: 254 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDIPL----------------- 296
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E LLTDNRIWK R G+GVVS AL+M FTG
Sbjct: 297 --------GLLDDIYQWATQFGDRIDETEELLTDNRIWKARTQGVGVVSAADALNMSFTG 348
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y+ + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 349 VMLRGSGVPWDIRKSQPYDAYDKVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNQ 408
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + K++ P R MK NME LIHHF LF++G+ VP GE YS +E PKGE G
Sbjct: 409 MPA--GPVKVEDYKLSPPPRAAMKENMEALIHHFLLFSKGYAVPPGETYSAIEAPKGEMG 466
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++LVSDG+ +PYR KIR+PGFAHL ++ GH+++D V IIGT D+VFGE+DR
Sbjct: 467 VFLVSDGSERPYRCKIRAPGFAHLGGFDQISRGHLLADAVAIIGTMDLVFGEVDR 521
>gi|341583713|ref|YP_004764204.1| NADH dehydrogenase subunit D [Rickettsia heilongjiangensis 054]
gi|340807939|gb|AEK74527.1| NADH dehydrogenase subunit D [Rickettsia heilongjiangensis 054]
Length = 391
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 236/413 (57%), Positives = 300/413 (72%), Gaps = 27/413 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
K+ LN GPQHPA HGVLRLILE++GEVV ADPHIGLLHR TEKL E +TYLQ++PY D
Sbjct: 6 KTITLNLGPQHPATHGVLRLILEMDGEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFD 65
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYVS MC EHA+ +A+E LL ++P RA++IRV+F E+TR+LNH + IGS +LDIGA
Sbjct: 66 RLDYVSPMCQEHAFALAVESLLECEVPRRAKFIRVLFSELTRILNHTLNIGSQALDIGAT 125
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
LL+ F ERE +++ YE VSG+RMH+ Y+RPGGV DLPE
Sbjct: 126 TPLLWLFEEREKIMEFYEHVSGSRMHSNYFRPGGVAADLPE------------------- 166
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
LL+ I+ F +FP + + E+LL +NR+WKQRLV IGV S + A+ GF+GPM
Sbjct: 167 ------GLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVASQKEAMDWGFSGPM 220
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
LRGSG+ WDLRK PY++Y+ ++F +PIGKNGD YDRY VR+ EM +S KIIKQCI+ +
Sbjct: 221 LRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQCIE--K 278
Query: 581 SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIY 640
KG V +++ K+T P R MK +ME +IHHFKL+TEG+ VP GE Y VE PKGEFG+Y
Sbjct: 279 MPKGAVKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGEFGVY 338
Query: 641 LVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
L S G N+PYR +I++PGFAHLQ L M GH+++DV+TII T DIVFGEIDR
Sbjct: 339 LYSQGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITIIATLDIVFGEIDR 391
>gi|238496957|ref|XP_002379714.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, putative
[Aspergillus flavus NRRL3357]
gi|83769576|dbj|BAE59711.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220694594|gb|EED50938.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, putative
[Aspergillus flavus NRRL3357]
gi|391867774|gb|EIT77014.1| ubiquinone oxidoreductase, NDUFS2/49 kDa subunit [Aspergillus
oryzae 3.042]
Length = 476
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 237/415 (57%), Positives = 298/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILE+ GE + +ADPH+GLLHR TEKL E +TY+Q+LPY
Sbjct: 89 KIRHYTVNFGPQHPAAHGVLRLILEINGEEIVRADPHVGLLHRGTEKLIEYKTYMQALPY 148
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE Y +A+EKLLNI+IP RA+YIR MF E+TR+LNHLM + SH++D+G
Sbjct: 149 FDRLDYVSMMTNEQCYSLAVEKLLNIEIPDRAKYIRTMFGEMTRILNHLMSVLSHAMDVG 208
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV +D+P
Sbjct: 209 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDIPL----------------- 251
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E LLTDNRIWK R G+GVVS AL+M FTG
Sbjct: 252 --------GLLDDIYQWATQFGDRIDETEELLTDNRIWKARTQGVGVVSAADALNMSFTG 303
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y+ + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 304 VMLRGSGVPWDIRKSQPYDAYDKVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNQ 363
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + K++ P R MK NME LIHHF LF++G+ VP GE YS +E PKGE G
Sbjct: 364 MPA--GPVKVEDYKLSPPPRAAMKENMEALIHHFLLFSKGYAVPPGETYSAIEAPKGEMG 421
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++LVSDG+ +PYR KIR+PGFAHL ++ GH+++D V IIGT D+VFGE+DR
Sbjct: 422 VFLVSDGSERPYRCKIRAPGFAHLGGFDQISRGHLLADAVAIIGTMDLVFGEVDR 476
>gi|383481414|ref|YP_005390329.1| NADH dehydrogenase subunit D [Rickettsia rhipicephali str.
3-7-female6-CWPP]
gi|378933753|gb|AFC72256.1| NADH dehydrogenase subunit D [Rickettsia rhipicephali str.
3-7-female6-CWPP]
Length = 391
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 236/413 (57%), Positives = 299/413 (72%), Gaps = 27/413 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
K+ LN GPQHPA HGVLRLILE++GEVV A PHIGLLHR TEKL E +TYLQ++PY D
Sbjct: 6 KTITLNLGPQHPATHGVLRLILEMDGEVVNNAAPHIGLLHRGTEKLIEHKTYLQAIPYFD 65
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYVS MC EHA+ +A+E LL ++P RAQ+IRV+F E+TR+LNH + IGS +LDIGA
Sbjct: 66 RLDYVSPMCQEHAFALAVESLLECEVPRRAQFIRVLFSELTRILNHTLNIGSQALDIGAT 125
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
LL+ F ERE +++ YE VSG+RMH+ Y+RPGGV DLPE
Sbjct: 126 TPLLWLFEEREKIMEFYEHVSGSRMHSNYFRPGGVAADLPE------------------- 166
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
LL+ I+ F +FP + + E+LL +NR+WKQRLV IGV S + A+ GF+GPM
Sbjct: 167 ------GLLEDIDKFIEQFPPKLQDIESLLNENRLWKQRLVDIGVASQKEAMDWGFSGPM 220
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
LRGSG+ WDLRK PY++Y+ ++F +PIGKNGD YDRY VR+ EM +S KIIKQCI+ +
Sbjct: 221 LRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQCIE--K 278
Query: 581 SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIY 640
KG V +++ K+T P R MK +ME +IHHFKL+TEG+ VP GE Y VE PKGEFG+Y
Sbjct: 279 MPKGAVKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGEFGVY 338
Query: 641 LVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
L S G N+PYR +I++PGFAHLQ L M GH+++DV+TII T DIVFGEIDR
Sbjct: 339 LYSQGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITIIATLDIVFGEIDR 391
>gi|389877832|ref|YP_006371397.1| NADH dehydrogenase I subunit D [Tistrella mobilis KA081020-065]
gi|388528616|gb|AFK53813.1| NADH dehydrogenase I chain D [Tistrella mobilis KA081020-065]
Length = 395
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 235/414 (56%), Positives = 301/414 (72%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
IK LNFGPQHPAAHGVLRL+LE++GEVV +ADPH+GLLHR TEKL E +TYLQ+LPY
Sbjct: 9 IKPMMLNFGPQHPAAHGVLRLVLEMDGEVVTRADPHVGLLHRGTEKLIEYKTYLQALPYF 68
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVS+M EHAYV+A+EKL I++P+R QYIRVMF E+TR+ NHL+ + + ++D+GA
Sbjct: 69 DRLDYVSIMNQEHAYVLAVEKLAGIEVPLRGQYIRVMFAELTRIANHLLNMTTFAMDLGA 128
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
LL+ F +RE ++ Y+ V GAR+HA Y+RPGGV +LP
Sbjct: 129 TTPLLWGFEDREIIMGFYDKVCGARLHANYFRPGGVSMELP------------------- 169
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD I FT FPK D+ E L++ +RIWKQR V +GV+S E AL G TGP
Sbjct: 170 ------AGLLDEIWKFTEEFPKRFDDLENLMSHSRIWKQRTVDVGVLSAEDALDWGLTGP 223
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSGV WDLRK QPY++Y+ ++FDIP+G+NGD YDRY VR++E+R+S KI++QCI+ +
Sbjct: 224 MLRGSGVPWDLRKAQPYDVYDRMDFDIPVGRNGDVYDRYNVRMKEVRESLKIVRQCIEQM 283
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
GP + + K+ PAR +MK +ME LIHHFKL+TEGF VP GE+Y E PKGEFG+
Sbjct: 284 --PDGPYRTEDRKVAPPARADMKRSMEALIHHFKLYTEGFKVPAGEVYVGTEAPKGEFGV 341
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG NKPYR KIR+PGFAH+ ++ M GH+++D V I+ DIVFGEIDR
Sbjct: 342 YLVSDGTNKPYRCKIRAPGFAHIAAMDFMSKGHLLADAVAILANMDIVFGEIDR 395
>gi|157964434|ref|YP_001499258.1| NADH dehydrogenase subunit D [Rickettsia massiliae MTU5]
gi|157844210|gb|ABV84711.1| NADH dehydrogenase I chain D [Rickettsia massiliae MTU5]
Length = 422
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 238/422 (56%), Positives = 302/422 (71%), Gaps = 27/422 (6%)
Query: 272 RKDFPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRT 331
RK+ K+ LN GPQHPA HGVLRLILE++GEVV A PHIGLLHR TEKL E +T
Sbjct: 28 RKNTMTNNTKTITLNLGPQHPATHGVLRLILEMDGEVVNNAVPHIGLLHRGTEKLIEHKT 87
Query: 332 YLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIG 391
YLQ++PY DRLDYVS MC EHA+ +A+E LL ++P RAQ+IRV+F E+TR+LNH + IG
Sbjct: 88 YLQAIPYFDRLDYVSPMCQEHAFALAVESLLECEVPRRAQFIRVLFSELTRILNHTLNIG 147
Query: 392 SHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSII 451
S +LDIGA LL+ F ERE +++ YE VSG+RMH+ Y+RPGGV DLPE
Sbjct: 148 SQALDIGATTPLLWLFEEREKIMEFYEHVSGSRMHSNYFRPGGVAADLPE---------- 197
Query: 452 RNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERA 511
LL+ I+ F +FP + + E+LL +NR+WKQRLV IGV S + A
Sbjct: 198 ---------------GLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVASQKEA 242
Query: 512 LSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKI 571
+ GF+GPMLRGSG+ WDLRK PY++Y+ ++F +PIGKNGD YDRY VR+ EM +S KI
Sbjct: 243 MDWGFSGPMLRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKI 302
Query: 572 IKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVE 631
IKQCI+ + KG V +++ K+T P R MK +ME +IHHFKL+TEG+ VP GE Y VE
Sbjct: 303 IKQCIE--KMPKGAVKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVE 360
Query: 632 HPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEI 691
PKGEFG+YL S G N+PYR +I++PGFAHLQ L M GH+++DV+TII T DIVFGEI
Sbjct: 361 APKGEFGVYLYSQGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITIIATLDIVFGEI 420
Query: 692 DR 693
DR
Sbjct: 421 DR 422
>gi|328543688|ref|YP_004303797.1| NADH dehydrogenase subunit D [Polymorphum gilvum SL003B-26A1]
gi|326413432|gb|ADZ70495.1| NADH dehydrogenase subunit D [Polymorphum gilvum SL003B-26A1]
Length = 394
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 236/415 (56%), Positives = 307/415 (73%), Gaps = 25/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL EQ+TYLQ++PY
Sbjct: 5 QVRNFNINFGPQHPAAHGVLRLVLELDGEVVTRVDPHIGLLHRGTEKLIEQKTYLQAVPY 64
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +A+E+LL + +P R Q IRV++ EI RLL+HL+ + + ++D+G
Sbjct: 65 FDRLDYVAPMNQEHAFALAVERLLGVTVPKRGQLIRVLYSEIGRLLSHLLNVTTQAMDVG 124
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F RE+L+ YE GARMHAAY RPGGV++DLP
Sbjct: 125 ALTPPLWGFEPREELMVFYERACGARMHAAYVRPGGVHQDLP------------------ 166
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
RQ LLD I DF + F + +D+ E LLTDNRI+KQR V IGVV E A + GF+G
Sbjct: 167 -----RQ--LLDDIWDFCDPFLQTLDDIEGLLTDNRIFKQRNVDIGVVKLEEAWAWGFSG 219
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG WDLRK QPYE Y L+FDIPIGKNGD YDRYL+R+EEMRQS +I+KQC++
Sbjct: 220 VMVRGSGAPWDLRKAQPYECYAELDFDIPIGKNGDCYDRYLIRMEEMRQSVRIMKQCLEK 279
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L GPV + + KI P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGEFG
Sbjct: 280 LTVETGPVSTTDGKIVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEFG 339
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLV+DG NKPYR KI++PG++HLQ++ + GHM++DV I+G+ DIVFGE+DR
Sbjct: 340 VYLVADGTNKPYRCKIKAPGYSHLQAMDFLCRGHMLADVSAILGSLDIVFGEVDR 394
>gi|357384366|ref|YP_004899090.1| NADH-ubiquinone oxidoreductase subunit D [Pelagibacterium
halotolerans B2]
gi|351593003|gb|AEQ51340.1| NADH-ubiquinone oxidoreductase chain D [Pelagibacterium
halotolerans B2]
Length = 396
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 231/417 (55%), Positives = 305/417 (73%), Gaps = 27/417 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPH+GLLHR TEKL E +TYLQ++PY
Sbjct: 5 DVRTFNINFGPQHPAAHGVLRLVLELDGEVVERVDPHVGLLHRGTEKLIEAKTYLQAVPY 64
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +A+EKLL I++P R Q IRV++ EI R+L+H++ + + +LD+G
Sbjct: 65 FDRLDYVAPMNQEHAFALAVEKLLGIEVPFRGQLIRVLYSEIGRILSHMLNVTTQALDVG 124
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F +RE L+ YE SG+RMHAA+ RPGGV++DLP+
Sbjct: 125 ALTPPLWGFEQREQLMVFYERASGSRMHAAFIRPGGVHQDLPQ----------------- 167
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L+D I FT FPK +D+ + L+T NRI+KQR V I VS E A + GF+G
Sbjct: 168 --------DLIDDIAKFTETFPKALDDLDQLITGNRIFKQRNVDIATVSLEDAWAWGFSG 219
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG WDLRK QPYE Y+ L FDIP+GKNGD YDRYL+R+EEMRQSN I++QC+
Sbjct: 220 VMVRGSGAAWDLRKSQPYECYDQLEFDIPVGKNGDCYDRYLIRMEEMRQSNSIMRQCVDL 279
Query: 579 LRS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
L + +GPV + + K+ P R MK +ME LIHHFKL+TEGF VP GE+Y+ VE PKGE
Sbjct: 280 LNTPEGQGPVSTMDGKVVPPKRGEMKRSMEALIHHFKLYTEGFRVPEGEVYAAVEAPKGE 339
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YLVSDG NKPYR KIR+PGFAHLQ++ + GH+++DV I+G+ DIVFGE+DR
Sbjct: 340 FGVYLVSDGTNKPYRCKIRAPGFAHLQAMDFLCRGHLLADVSAILGSLDIVFGEVDR 396
>gi|167646795|ref|YP_001684458.1| NADH dehydrogenase subunit D [Caulobacter sp. K31]
gi|218534396|sp|B0SZ49.1|NUOD_CAUSK RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|167349225|gb|ABZ71960.1| NADH dehydrogenase I, D subunit [Caulobacter sp. K31]
Length = 416
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 237/432 (54%), Positives = 307/432 (71%), Gaps = 26/432 (6%)
Query: 262 TDYGFVGHPFRKDFPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHR 321
TD+ F P P ++ + +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR
Sbjct: 11 TDF-FHDAPSLPAVPETPVRKFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHR 69
Query: 322 ATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEIT 381
TEKL E RTYLQ++PY DRLDYV+ M EHA+ +AIEKLL + +P+R IRV+F EI
Sbjct: 70 GTEKLMEARTYLQNIPYFDRLDYVAPMNQEHAFCLAIEKLLGVDVPLRGSLIRVLFCEIG 129
Query: 382 RLLNHLMWIGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPE 441
R+LNHL+ + + ++D+GA+ L+ F ERE L+ YE GAR+HA Y+RPGGV++DL
Sbjct: 130 RVLNHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERACGARLHANYFRPGGVHQDL-- 187
Query: 442 IMPQYKSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLV 501
SL+D IE + FPK D+ E L+TDNRI+KQR V
Sbjct: 188 -----------------------TPSLIDDIEKWAKAFPKICDDIEGLITDNRIFKQRNV 224
Query: 502 GIGVVSPERALSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVR 561
IGVV+ E AL+ GF+G M+RGSG+ WDLR+ QPYE YN FDIP+GKNGD YDRYL R
Sbjct: 225 DIGVVTKEDALAWGFSGVMVRGSGIAWDLRRNQPYECYNDFEFDIPLGKNGDCYDRYLCR 284
Query: 562 IEEMRQSNKIIKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYV 621
++EMR+S KII Q I+ LR+ GPV++ +NK+ P R MK +ME LIHHFKL+TEGF
Sbjct: 285 MQEMRESTKIILQAIEKLRATPGPVMTQDNKVAPPRRAEMKRSMEALIHHFKLYTEGFRT 344
Query: 622 PLGEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTII 681
P GE+Y+CVE PKGEFG++LVS+G NKPYR KI++PGF+HL ++ M GH ++DV I+
Sbjct: 345 PEGEVYACVEAPKGEFGVFLVSNGTNKPYRCKIKAPGFSHLAAMDWMNRGHQLADVSAIL 404
Query: 682 GTQDIVFGEIDR 693
G+ DIVFGE+DR
Sbjct: 405 GSLDIVFGEVDR 416
>gi|340027663|ref|ZP_08663726.1| NADH dehydrogenase subunit D [Paracoccus sp. TRP]
Length = 412
Score = 493 bits (1270), Expect = e-136, Method: Compositional matrix adjust.
Identities = 237/414 (57%), Positives = 305/414 (73%), Gaps = 25/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
I+++ +NFGPQHPAAHGVLR++LEL+GEVV +ADPHIGLLHR TEKL E RTYLQ+LPY+
Sbjct: 24 IRNFNINFGPQHPAAHGVLRMVLELDGEVVERADPHIGLLHRGTEKLMESRTYLQNLPYL 83
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +AIE+L IP RA IRV++ EI R+LNHLM I + ++D+GA
Sbjct: 84 DRLDYVAPMNQEHAWCLAIERLTGTAIPRRASLIRVLYSEIGRILNHLMGITTGAMDVGA 143
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F RE+L+ YE GAR+HAAY+RPGGV++DLP
Sbjct: 144 LTPPLWGFEAREELMVFYERACGARLHAAYFRPGGVHQDLPP------------------ 185
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD IE++ RFPK +D+ +TLLT+NRI+KQRLV IG+V+ E AL+ G+TG
Sbjct: 186 -------DLLDDIEEWCERFPKLVDDLDTLLTENRIFKQRLVDIGIVTEEDALNWGYTGV 238
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG+ WDLR+ QPYE Y+ +F IP+GKNGD YDRYL R+ EMR+S KI+KQ ++ L
Sbjct: 239 MVRGSGLAWDLRRAQPYECYDEFDFQIPVGKNGDCYDRYLCRMAEMRESCKIMKQAVQKL 298
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
R+ + K+T P R +MK +ME LIHHFKL+TEGF VP GE+Y+ VE PKGEFG+
Sbjct: 299 RAEPVGDVLARGKLTPPKRADMKRDMEALIHHFKLYTEGFRVPAGEVYASVEAPKGEFGV 358
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLV+DG NKP+R K+R+PGFAHLQS+ M GHM++DV II T DIVFGE+DR
Sbjct: 359 YLVADGTNKPWRAKLRAPGFAHLQSIDWMARGHMLADVPAIIATLDIVFGEVDR 412
>gi|326475647|gb|EGD99656.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Trichophyton
tonsurans CBS 112818]
Length = 473
Score = 493 bits (1270), Expect = e-136, Method: Compositional matrix adjust.
Identities = 237/415 (57%), Positives = 298/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E +TY+Q+LPY
Sbjct: 86 KIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYMQALPY 145
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLNI+I RA++IR MF EITR+LNHLM + SH++D+G
Sbjct: 146 FDRLDYVSMMTNEQCFSLAVEKLLNIEISERAKWIRTMFGEITRILNHLMSVLSHAMDVG 205
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV++D+P
Sbjct: 206 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPL----------------- 248
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E LLTDNRIWK R VG+GVV+ AL+ GF+G
Sbjct: 249 --------GLLDDIYQWATQFADRIDETEELLTDNRIWKARTVGVGVVTAAEALNYGFSG 300
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 301 VMLRGSGVPWDIRKSQPYDAYGQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNK 360
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + KI+ P RI MK NME LIHHF LFT+G+ VP GE YS +E PKGE
Sbjct: 361 MPA--GPVRVEDYKISPPPRIAMKENMEALIHHFLLFTKGYTVPPGETYSAIEAPKGEMA 418
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++LVSDG+ +PYR KIR+PGFAHL ++ GH+++D V IIGT D+VFGE+DR
Sbjct: 419 VFLVSDGSERPYRCKIRAPGFAHLGCFDQLSRGHLLADAVAIIGTMDLVFGEVDR 473
>gi|349685710|ref|ZP_08896852.1| NADH dehydrogenase subunit D [Gluconacetobacter oboediens 174Bp2]
Length = 418
Score = 493 bits (1270), Expect = e-136, Method: Compositional matrix adjust.
Identities = 238/417 (57%), Positives = 303/417 (72%), Gaps = 27/417 (6%)
Query: 277 VIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSL 336
V+EI S+ LNFGPQHP+AHGVLRL+LE+EGEVV +A PH+GLLHR TEKL E +TY ++L
Sbjct: 29 VVEIDSHALNFGPQHPSAHGVLRLVLEMEGEVVARAIPHVGLLHRGTEKLIEYKTYPKAL 88
Query: 337 PYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLD 396
PY DRLDYVS MC E A+ +A+EKLLNI+ P RA++IRVMF EITR+LNH++ + S LD
Sbjct: 89 PYFDRLDYVSPMCEEQAFALAVEKLLNIEAPERAKWIRVMFAEITRILNHILNLTSFGLD 148
Query: 397 IGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKA 456
GA+ L+ + ERE L++ YEA SGAR HA Y RPGGV RDLP
Sbjct: 149 CGALTPALWGYEEREKLIEFYEAASGARFHANYVRPGGVARDLP---------------- 192
Query: 457 TKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGF 516
L + I D+ FPK ID+ E+LLT NRIWKQR VGIGV + E+AL+ GF
Sbjct: 193 ---------AGLEERIADWARTFPKWIDDLESLLTSNRIWKQRTVGIGVFTTEQALAWGF 243
Query: 517 TGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCI 576
+GP LR SGV WDLR+ QPY+ Y+ + F++P+G+ GD YDRYL+R+ EMR+S +II QC+
Sbjct: 244 SGPCLRASGVPWDLRRSQPYDNYDKVEFNVPVGRQGDCYDRYLIRVAEMRESVRIINQCL 303
Query: 577 KWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
+ +R GPV ++KIT P R MK +ME LIHHFKLFTEG++VP G Y+ E PKGE
Sbjct: 304 EQIRP--GPVKVRDHKITPPPRREMKRSMEALIHHFKLFTEGYHVPPGATYTVTETPKGE 361
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YLV+DG+N+PYR KIR GF+HLQ++ EM HM++D V IIG+ D+VFGEIDR
Sbjct: 362 FGVYLVADGSNRPYRCKIRPTGFSHLQAIDEMSRRHMLADAVAIIGSLDLVFGEIDR 418
>gi|67523917|ref|XP_660018.1| hypothetical protein AN2414.2 [Aspergillus nidulans FGSC A4]
gi|40745369|gb|EAA64525.1| hypothetical protein AN2414.2 [Aspergillus nidulans FGSC A4]
Length = 468
Score = 493 bits (1270), Expect = e-136, Method: Compositional matrix adjust.
Identities = 239/415 (57%), Positives = 296/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILE+ GE + +ADPH+GLLHR TEKL E ++Y Q+LPY
Sbjct: 81 KIRHYTVNFGPQHPAAHGVLRLILEINGEEIVRADPHVGLLHRGTEKLIEYKSYFQALPY 140
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE Y +A+EKLLNI+IP RA+YIR MF EITR+LNHLM + SH++D+G
Sbjct: 141 FDRLDYVSMMTNEQCYSLAVEKLLNIEIPERAKYIRTMFGEITRILNHLMSVLSHAMDVG 200
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV +DLP
Sbjct: 201 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDLPL----------------- 243
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E LLTDNRIWK R G+GVVS AL+M FTG
Sbjct: 244 --------GLLDDIYQWATQFGDRIDETEELLTDNRIWKARTQGVGVVSAADALNMSFTG 295
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y+ + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 296 VMLRGSGVPWDIRKSQPYDAYDKVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNQ 355
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + KI P R MK NME LIHHF L+T+G+ VP GE YS +E PKGE G
Sbjct: 356 MPA--GPVRVEDYKIMPPPRAAMKENMEALIHHFLLYTKGYAVPPGETYSAIEAPKGEMG 413
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++LVSDG+ +PYR KIR+PGFAHL ++ GH+++D V IIGT D+VFGE+DR
Sbjct: 414 VFLVSDGSERPYRCKIRAPGFAHLGGFDQIARGHLLADAVAIIGTMDLVFGEVDR 468
>gi|406706133|ref|YP_006756486.1| NADH dehydrogenase subunit D [alpha proteobacterium HIMB5]
gi|406651909|gb|AFS47309.1| NADH dehydrogenase subunit D [alpha proteobacterium HIMB5]
Length = 391
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 239/415 (57%), Positives = 307/415 (73%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK+ LNFGPQHPAAHGVLRLILEL+GEVV KADPHIGLLHR TEKL E +TY+Q++PY
Sbjct: 4 KIKNLNLNFGPQHPAAHGVLRLILELDGEVVEKADPHIGLLHRGTEKLIENKTYMQAVPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +AIEK+L I++PIRAQ+IRV+F EI R+L+H++ + + +LD+G
Sbjct: 64 FDRLDYVAPMNQEHAFALAIEKILEIEVPIRAQFIRVIFCEIGRILSHILNVTTQALDVG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE SG+R+HA Y+R GGV++DLP
Sbjct: 124 ALTPSLWGFEERETLMTFYERASGSRLHANYFRAGGVHQDLPR----------------- 166
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L + I F FPK I++ E LLTDNRI+KQR V IGVV+ E AL FTG
Sbjct: 167 --------GLENDIAKFCETFPKVINDLENLLTDNRIFKQRNVDIGVVTKEDALDHSFTG 218
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG+ WDLRK QPY+ Y+ L F IP+GKNGD YDRYL RIEEM++S IIKQC+
Sbjct: 219 VMIRGSGIPWDLRKSQPYDCYDQLEFKIPVGKNGDCYDRYLCRIEEMKESISIIKQCLA- 277
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ KGP+ S + KI+ P++ ++K +ME LIHHFKLFTEG+ VP EIY+ VE PKGEFG
Sbjct: 278 -KMEKGPIKSLDGKISPPSKKDLKQSMEALIHHFKLFTEGYRVPKDEIYTAVEAPKGEFG 336
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YL+SDG+NKPY+ KIR+PGF+HLQS+ +I GHM++DV I+G+ DIVFGE+DR
Sbjct: 337 VYLISDGSNKPYKCKIRAPGFSHLQSMDYLIRGHMLADVPAILGSLDIVFGEVDR 391
>gi|121716356|ref|XP_001275783.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, putative
[Aspergillus clavatus NRRL 1]
gi|119403940|gb|EAW14357.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, putative
[Aspergillus clavatus NRRL 1]
Length = 474
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 238/415 (57%), Positives = 298/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILEL GE + ++DPH+GLLHR TEKL E +TY+Q+LPY
Sbjct: 87 KIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRSDPHVGLLHRGTEKLIEYKTYMQALPY 146
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLNI IP RA++IR +F EITR+LNHLM + SH++D+G
Sbjct: 147 FDRLDYVSMMTNEQCFSLAVEKLLNIDIPERAKWIRTLFGEITRILNHLMSVLSHAMDVG 206
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV +DLP
Sbjct: 207 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDLPL----------------- 249
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E LLTDNRIWK R G+GVVS AL+M FTG
Sbjct: 250 --------GLLDDIYQWATQFGDRIDETEELLTDNRIWKARTQGVGVVSAADALNMSFTG 301
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y+ + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 302 VMLRGSGVPWDIRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNK 361
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + KI+ P R+ MK NME LIHHF LFT+G+ VP GE YS +E PKGE G
Sbjct: 362 IPA--GPVRVEDYKISPPPRVAMKENMEALIHHFLLFTKGYSVPPGETYSAIEAPKGEMG 419
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++LVSDG+ +PYR KIR+PGFAHL ++ GH+++D V IIGT D+VFGE+DR
Sbjct: 420 VFLVSDGSERPYRCKIRAPGFAHLGGFDQISRGHLLADAVAIIGTMDLVFGEVDR 474
>gi|212530120|ref|XP_002145217.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, putative
[Talaromyces marneffei ATCC 18224]
gi|210074615|gb|EEA28702.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, putative
[Talaromyces marneffei ATCC 18224]
Length = 474
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 238/415 (57%), Positives = 297/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E +TY+Q+LPY
Sbjct: 87 KIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYMQALPY 146
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLNI IP RA++IR +F EITR+LNHLM + SH++D+G
Sbjct: 147 FDRLDYVSMMTNEQCFSLAVEKLLNIDIPERAKWIRTLFGEITRVLNHLMSVLSHAMDVG 206
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV +DLP
Sbjct: 207 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDLPL----------------- 249
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E LLTDNRIWK R G+GVVS AL+M FTG
Sbjct: 250 --------GLLDDIYQWATQFGDRIDETEELLTDNRIWKARTQGVGVVSAADALNMSFTG 301
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y+ + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 302 VMLRGSGVPWDVRKSQPYDAYDQVEFDVPVGMNGDCYDRYLCRMEEFRQSLRIIHQCLNK 361
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + KI+ P R MK NME LIHHF LFT+G+ VP GE YS +E PKGE G
Sbjct: 362 MPA--GPVKVEDYKISPPPRAAMKENMEALIHHFLLFTKGYTVPPGETYSAIEAPKGEMG 419
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+++VSDG+ +PYR KIR+PGFAHL ++ GH+++D V IIGT D+VFGE+DR
Sbjct: 420 VFVVSDGSERPYRCKIRAPGFAHLGGFDQVARGHLLADAVAIIGTMDLVFGEVDR 474
>gi|220924008|ref|YP_002499310.1| NADH dehydrogenase I subunit D [Methylobacterium nodulans ORS 2060]
gi|219948615|gb|ACL59007.1| NADH dehydrogenase I, D subunit [Methylobacterium nodulans ORS
2060]
Length = 396
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 232/416 (55%), Positives = 308/416 (74%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
I+++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E +TYLQ+ PY
Sbjct: 6 IRNFSINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIEYKTYLQATPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +A+EKLL I++P RA+ IR ++ EI RLL+HL+ + + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAFCLAVEKLLGIEVPRRAKLIRTLYCEIGRLLSHLLNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SGAR+HA Y+RPGGV++DLP
Sbjct: 126 LTPPLWGFEEREKLMIFYERASGARLHANYFRPGGVHQDLP------------------- 166
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD IE F FP+ +D+ + L+ NRI+KQR V IG+V+ ++A++ GF+G
Sbjct: 167 ------AGLLDDIEAFCETFPQVVDDLDELVIGNRIFKQRNVDIGIVTADQAMAWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG+ WDLRK QPYE Y + F+IP+GKNGD+YDR ++R+EEMRQS +I+KQCI L
Sbjct: 221 MVRGSGIPWDLRKAQPYESYEEMEFEIPVGKNGDTYDRQVIRMEEMRQSVRIMKQCIAKL 280
Query: 580 RS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
R+ +GPV + + K+ P+R MK +ME LIHHFKL+TEGF+VP GE+Y+ VE PKGEF
Sbjct: 281 RAPDGQGPVATQDGKVAPPSRREMKRSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLV+DG NKPYR KIR+PGFAHLQ++ M GHM++DV IIGT DIVFGE+DR
Sbjct: 341 GVYLVADGTNKPYRCKIRAPGFAHLQAMDWMCRGHMLADVSCIIGTLDIVFGEVDR 396
>gi|349699177|ref|ZP_08900806.1| NADH dehydrogenase subunit D [Gluconacetobacter europaeus LMG
18494]
Length = 418
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 238/417 (57%), Positives = 303/417 (72%), Gaps = 27/417 (6%)
Query: 277 VIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSL 336
V+EI S+ LNFGPQHP+AHGVLRLILE+EGEVV +A PH+GLLHR TEKL E +TY ++L
Sbjct: 29 VVEIDSHALNFGPQHPSAHGVLRLILEMEGEVVARAIPHVGLLHRGTEKLIEYKTYPKAL 88
Query: 337 PYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLD 396
PY DRLDYVS MC E A+ +A+EKLLNI+ P RA++IRVMF EITR+LNH++ + S LD
Sbjct: 89 PYFDRLDYVSPMCEEQAFALAVEKLLNIEAPERAKWIRVMFAEITRILNHILNLTSFGLD 148
Query: 397 IGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKA 456
GA+ L+ + ERE L++ YEA SGAR HA Y RPGGV RDLP
Sbjct: 149 CGALTPALWGYEEREKLIEFYEAASGARFHANYVRPGGVARDLP---------------- 192
Query: 457 TKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGF 516
L + I D+ FPK ID+ E+LLT NRIWKQR VGIGV + E+AL+ GF
Sbjct: 193 ---------AGLEERIADWARTFPKWIDDLESLLTSNRIWKQRTVGIGVFTTEQALAWGF 243
Query: 517 TGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCI 576
+GP LR SGV WDLR+ QPY+ Y+ + F++P+G+ GD YDRYL+R+ EMR+S +II QC+
Sbjct: 244 SGPCLRASGVPWDLRRSQPYDNYDKVEFNVPVGRQGDCYDRYLIRVAEMRESVRIINQCL 303
Query: 577 KWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
+ +R GP+ ++KIT P R MK +ME LIHHFKLFTEG++VP G Y+ E PKGE
Sbjct: 304 EHIRP--GPIKVRDHKITPPPRREMKRSMEALIHHFKLFTEGYHVPPGATYTVTETPKGE 361
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YLV+DG+N+PYR KIR GF+HLQ++ EM HM++D V IIG+ D+VFGEIDR
Sbjct: 362 FGVYLVADGSNRPYRCKIRPTGFSHLQAIDEMSRRHMLADAVAIIGSLDLVFGEIDR 418
>gi|301353220|ref|YP_003795217.1| NADH dehydrogenase subunit 7 [Proteromonas lacertae]
gi|290573168|gb|ADD46355.1| NADH dehydrogenase subunit 7 [Proteromonas lacertae]
Length = 392
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 236/414 (57%), Positives = 301/414 (72%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
IKS+ LNFGPQHPA HGVLRLIL+L+GEVV +ADPHIG LHR TEKL E +TYLQ+LP+
Sbjct: 6 IKSFTLNFGPQHPATHGVLRLILKLQGEVVFQADPHIGFLHRGTEKLIEHKTYLQALPHF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDY++MMCNEH Y +A+E LL+ IP+RA+YIRV+F E+TRLLNHL+ +GS +LD+GA
Sbjct: 66 DRLDYIAMMCNEHCYSLAVETLLHTDIPLRAKYIRVIFSELTRLLNHLIAVGSAALDLGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M V+L+ F ERE +L+ YE VSGARMHA + RPGGV DLP
Sbjct: 126 MTVMLWLFEEREKILEFYERVSGARMHANFIRPGGVREDLPL------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LL+ I D R P +DE E LLT+NRIW+ RLV +GVV+ AL GF+G
Sbjct: 168 -------GLLEDIYDLCLRLPHRLDEAEELLTNNRIWRNRLVDVGVVTKNEALKNGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLR +G+ WDLRK PYE+Y+ +NF +P+G NGD YDRY++R+EEMRQS II QC++ +
Sbjct: 221 MLRSTGLLWDLRKNFPYEVYDKINFSVPVGTNGDCYDRYIMRMEEMRQSISIILQCLQNI 280
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+GP+ NNKI P R +MK++ME LI HFK+F+EGFYVP GE ++C+E PKGE G+
Sbjct: 281 --PEGPIKIANNKIAIPLRSSMKNSMEALIDHFKIFSEGFYVPAGETFTCIEAPKGELGV 338
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVS G NKPYR +++PG+ HLQ + + GH ++D+V IIG DIVFGEIDR
Sbjct: 339 YLVSIGENKPYRCHVKAPGYTHLQGVELLSKGHFLADIVAIIGAFDIVFGEIDR 392
>gi|110633379|ref|YP_673587.1| NADH dehydrogenase subunit D [Chelativorans sp. BNC1]
gi|123162556|sp|Q11JK3.1|NUOD_MESSB RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|110284363|gb|ABG62422.1| NADH dehydrogenase subunit D [Chelativorans sp. BNC1]
Length = 396
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 233/416 (56%), Positives = 308/416 (74%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
I+++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 6 IRNFNINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEYKTYLQAIPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +AIE+LL I +PIR Q IRV++ EI+R+LNHL+ I + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAFALAIERLLGIDVPIRGQLIRVLYSEISRILNHLLNITTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SGARMHAAY+RPGGV++DLPE
Sbjct: 126 LTPPLWGFEEREKLMVFYERASGARMHAAYFRPGGVHQDLPE------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L++ I + + F K +D+ + LLT+NRI+KQR IG+VS E A + GF+G
Sbjct: 168 -------KLVEDIGKWIDPFLKTVDDLDELLTENRIFKQRNADIGIVSLEDAWAWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLRK QPYE Y ++FDIP+GKNGD YDRYL+R+EEMRQS KI++QC++ L
Sbjct: 221 MVRGSGAAWDLRKSQPYECYPEMDFDIPVGKNGDCYDRYLIRMEEMRQSAKIMRQCVERL 280
Query: 580 --RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+ GPV + + K+ P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGEF
Sbjct: 281 LGKERVGPVSNMDGKVVPPKRAAMKRSMESLIHHFKLYTEGYHVPAGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLV+DG NKPYR K+R+PGFAHLQ++ M GH+++DV ++G+ DIVFGE+DR
Sbjct: 341 GVYLVADGTNKPYRCKLRAPGFAHLQAMDFMCRGHLLADVTAVLGSLDIVFGEVDR 396
>gi|307942120|ref|ZP_07657471.1| NADH dehydrogenase (quinone), d subunit [Roseibium sp. TrichSKD4]
gi|307774406|gb|EFO33616.1| NADH dehydrogenase (quinone), d subunit [Roseibium sp. TrichSKD4]
Length = 394
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 235/415 (56%), Positives = 306/415 (73%), Gaps = 25/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 5 QVRNFNINFGPQHPAAHGVLRLVLELDGEVVTRVDPHIGLLHRGTEKLIEHKTYLQAVPY 64
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHAY +A+E++L I++P+R Q IRV++ EI RLL+HL+ I + +LD+G
Sbjct: 65 FDRLDYVAPMNQEHAYALAVERMLGIEVPMRGQLIRVLYSEIGRLLSHLLNITTQALDVG 124
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F RE+L+ YE GARMHAAY RPGGV++DLP
Sbjct: 125 ALTPPLWGFEPREELMVFYERACGARMHAAYVRPGGVHQDLPR----------------- 167
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I DF + F + +D+ E LLT+NRI+KQR V IGVVS + A + GF+G
Sbjct: 168 --------DLLDDIWDFCDPFLQTLDDIEGLLTNNRIFKQRNVDIGVVSLDDAWAWGFSG 219
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG WDLRK QPYE Y L+FDIPIGKNGD YDRYL+R+EEMRQS +I+KQC++
Sbjct: 220 VMVRGSGAAWDLRKSQPYECYADLDFDIPIGKNGDCYDRYLIRMEEMRQSVRIMKQCLEK 279
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L GPV S + KI P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGEFG
Sbjct: 280 LTIENGPVSSADGKIVPPKRGEMKRSMESLIHHFKLYTEGYHVPAGEVYAAVEAPKGEFG 339
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG NKPYR KI++PG+AHL ++ + +GH ++DV ++G+ DIVFGE+DR
Sbjct: 340 VYLVSDGTNKPYRCKIKAPGYAHLSAMDFVCNGHQLADVSAVLGSMDIVFGEVDR 394
>gi|347758130|ref|YP_004865692.1| NADH dehydrogenase, D subunit [Micavibrio aeruginosavorus ARL-13]
gi|347590648|gb|AEP09690.1| NADH dehydrogenase, D subunit [Micavibrio aeruginosavorus ARL-13]
Length = 406
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 243/416 (58%), Positives = 303/416 (72%), Gaps = 28/416 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRL+LE+EGEVV +ADPHIGLLHR TEKL E +TY+Q++PY
Sbjct: 18 QIRPYTMNFGPQHPAAHGVLRLVLEMEGEVVERADPHIGLLHRGTEKLIEYKTYMQAVPY 77
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +A EKLL I +P RAQYIRV++ E+ R+LNHL+ I + +LD+G
Sbjct: 78 FDRLDYVAPMNQEHAFALATEKLLGITVPKRAQYIRVLYCELGRILNHLLNITTFALDVG 137
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE ++ YE V GAR+HA Y+RPGGV +DLP
Sbjct: 138 AITPALWGFEEREKGMEFYERVCGARLHANYFRPGGVSQDLP------------------ 179
Query: 459 ILNENRQGSLLDFIEDFTNR-FPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
LLD + D+ + P ID+ + L+T NRI+KQR V IGVV+ E AL+ GFT
Sbjct: 180 -------AGLLDDMMDWVEKSVPAVIDDLDDLMTGNRIFKQRTVDIGVVTKEEALNWGFT 232
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GPMLRGSGV WDLRK QPYE+Y ++FDIP+GK GD Y RYLVR+EEMRQS KI+KQ I+
Sbjct: 233 GPMLRGSGVAWDLRKSQPYEVYADMDFDIPVGKTGDCYARYLVRMEEMRQSLKIMKQAIQ 292
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+ GPV ++ KI P R MKS+ME LIHHFKL+TEG++VP GE Y+ VE PKGEF
Sbjct: 293 QMPG--GPVKVDDRKIAPPPRGEMKSSMEALIHHFKLYTEGYHVPAGETYAAVEAPKGEF 350
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG N+PYR +IR+PGF HLQ L M GHM++DVV IG+ DIVFGEIDR
Sbjct: 351 GVYLVSDGGNRPYRCRIRAPGFLHLQGLDFMSRGHMLADVVANIGSMDIVFGEIDR 406
>gi|407768983|ref|ZP_11116360.1| NADH dehydrogenase, D subunit [Thalassospira xiamenensis M-5 = DSM
17429]
gi|407287903|gb|EKF13382.1| NADH dehydrogenase, D subunit [Thalassospira xiamenensis M-5 = DSM
17429]
Length = 392
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 238/415 (57%), Positives = 302/415 (72%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK+ +NFGPQHPAAHGVLRL+LE++GEV+ +ADPHIGLLHR TEKL E +TY+Q+ PY
Sbjct: 5 KIKNMTMNFGPQHPAAHGVLRLVLEMDGEVIERADPHIGLLHRGTEKLIEYKTYIQATPY 64
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHAY +AIEKL+ +++P RAQYIRV++ E+ R+LNHL+ + + +LD+G
Sbjct: 65 FDRLDYVAPMNQEHAYCLAIEKLMGVEVPKRAQYIRVLYAEMGRILNHLLNLTAFALDVG 124
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM LL+ F ERE L++ YE GAR+HA Y+RPGGV DLP
Sbjct: 125 AMTPLLWGFEEREKLMEFYERACGARLHANYFRPGGVAADLP------------------ 166
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LL I+ + ++FPK + +++ +LT NRI+KQR V IG+VSPE AL FTG
Sbjct: 167 -------AGLLADIDAWCDQFPKFVKDFDRILTGNRIFKQRTVDIGIVSPEEALDWAFTG 219
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
P +R SG+ WDLRK QPY+ Y +FDIPIGKNGD YDR+LVR EEM QS +I+KQ IK
Sbjct: 220 PNIRASGMAWDLRKSQPYDSYEDFDFDIPIGKNGDCYDRFLVRFEEMNQSLRIMKQAIKE 279
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ G VI NNK+ P+R MK +ME LIHHFKLFTEGF+VP GE Y+ VE PKGEFG
Sbjct: 280 MPD--GAVIVENNKVAPPSRSEMKRSMEALIHHFKLFTEGFHVPAGECYAAVEAPKGEFG 337
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YL+SDG+N+PYR KIR+PGF HLQ + M GHM++DVV IG+ DIVFGEIDR
Sbjct: 338 VYLISDGSNRPYRCKIRAPGFPHLQGIDFMSKGHMLADVVANIGSLDIVFGEIDR 392
>gi|346979357|gb|EGY22809.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Verticillium dahliae
VdLs.17]
Length = 472
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 236/432 (54%), Positives = 306/432 (70%), Gaps = 31/432 (7%)
Query: 262 TDYGFVGHPFRKDFPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHR 321
TD+G P + +++ Y +NFGPQHPAAHGVLRLILE+ GE + +ADPH+GLLHR
Sbjct: 72 TDHG----PAKDGIEDKKVRHYTVNFGPQHPAAHGVLRLILEINGEEIVRADPHVGLLHR 127
Query: 322 ATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEIT 381
TEKL E +TYLQ+LPY DRLDYVSMM NE + +A+EKLLNI+IP RA++IR +F EIT
Sbjct: 128 GTEKLIEYKTYLQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPDRAKWIRTLFGEIT 187
Query: 382 RLLNHLMWIGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPE 441
R+LNHLM + SH++D+GA+ L+ F ERE L++ YE VSGAR+HAAY RPGGV++D+P
Sbjct: 188 RVLNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPV 247
Query: 442 IMPQYKSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLV 501
LLD I + +F +DE E +LTDNRIW QRL
Sbjct: 248 -------------------------GLLDDIYQWATQFGDRLDETEEMLTDNRIWLQRLQ 282
Query: 502 GIGVVSPERALSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVR 561
G+GVVS AL++ FTGPMLRGSGV WD+RK QPY+ Y+ + FD+P+G GD YDRYLVR
Sbjct: 283 GVGVVSAAEALNLSFTGPMLRGSGVPWDIRKSQPYDAYDQVEFDVPVGVRGDCYDRYLVR 342
Query: 562 IEEMRQSNKIIKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYV 621
+EE RQS +II QC+ + + GPV + K++ P R MK NME LIHHF L+T+G+ V
Sbjct: 343 MEEFRQSLRIIHQCLNKMPA--GPVRVEDYKVSPPPRAAMKENMEALIHHFLLYTKGYAV 400
Query: 622 PLGEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTII 681
P GE YS +E PKGE G+++VSDG+ +PYR+ IR+PGFAHL + GHM++D V +I
Sbjct: 401 PPGETYSAIEAPKGEMGVFVVSDGSERPYRVHIRAPGFAHLAGFDHVCKGHMLADAVAVI 460
Query: 682 GTQDIVFGEIDR 693
GT D+VFGE+DR
Sbjct: 461 GTMDLVFGEVDR 472
>gi|73667050|ref|YP_303066.1| NADH dehydrogenase subunit D [Ehrlichia canis str. Jake]
gi|123614938|sp|Q3YS37.1|NUOD_EHRCJ RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|72394191|gb|AAZ68468.1| NADH dehydrogenase subunit D [Ehrlichia canis str. Jake]
Length = 393
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 240/416 (57%), Positives = 301/416 (72%), Gaps = 27/416 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
++I LNFGPQHPAAHGV+RL+LE+ GEV+ + DPHIGLLHR TEKL E +TYLQ+LP
Sbjct: 5 VKITPMTLNFGPQHPAAHGVMRLVLEMGGEVIERIDPHIGLLHRGTEKLIEYKTYLQALP 64
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y DRLDYVS M EHAY + +EKLL +IPIRA+Y+RV+F E+TR+LNHL+ I S +LDI
Sbjct: 65 YFDRLDYVSPMAQEHAYSLCVEKLLKCEIPIRAKYLRVIFCELTRILNHLLNISSQALDI 124
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GAM LL+ F ERE +L YE SGAR H+AY RPGGV D+P
Sbjct: 125 GAMTPLLWMFEEREKILGFYERASGARFHSAYIRPGGVAADVP----------------- 167
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
L+D I F + F K +D+ + LLT+NRIWKQR V IGVVS ++AL GF+
Sbjct: 168 --------SDLIDDIFKFVSTFSKFMDDIDDLLTENRIWKQRNVDIGVVSKKQALDWGFS 219
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GPMLR G+ WDLRK QPYEIY L F+IP+G+NGD YDRYLVR+ E+RQS K+++QC+
Sbjct: 220 GPMLRACGIPWDLRKSQPYEIYEDLEFEIPVGENGDCYDRYLVRMAEIRQSIKLLEQCLD 279
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
R GPV +++ KI P R MK +ME LIHHFKL++EG+ VP+GE Y VE PKGEF
Sbjct: 280 --RLPDGPVKTDDRKIAPPKRSEMKESMEALIHHFKLYSEGYSVPVGETYMAVEAPKGEF 337
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+Y+VSDG NKPYR +IR+PGFAHLQ++ + GHM++D+ IIG+ DIVFGEIDR
Sbjct: 338 GVYIVSDGTNKPYRCRIRAPGFAHLQAIDIIAKGHMLADLTAIIGSLDIVFGEIDR 393
>gi|110680467|ref|YP_683474.1| NADH dehydrogenase subunit D [Roseobacter denitrificans OCh 114]
gi|122972619|sp|Q163Q5.1|NUOD_ROSDO RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|109456583|gb|ABG32788.1| NADH-quinone oxidoreductase chain D [Roseobacter denitrificans OCh
114]
Length = 407
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 239/416 (57%), Positives = 306/416 (73%), Gaps = 26/416 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 17 KIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNLPY 76
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +AIEKL +++P RA IRV+F EI R+LNH++ I + ++D+G
Sbjct: 77 FDRLDYVAPMNQEHAWCLAIEKLTGVEVPRRASLIRVLFCEIGRILNHILNITTQAMDVG 136
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE SGAR+HAAY+RPGGV++DLP
Sbjct: 137 ALTPPLWGFEEREKLMVFYERASGARLHAAYFRPGGVHQDLPP----------------- 179
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+L+D IE + + FP+ ID+ + LLT+NRI+KQR IGVV+ E L GF+G
Sbjct: 180 --------ALIDDIETWAHEFPRVIDDIDGLLTENRIFKQRNADIGVVTEEDILEYGFSG 231
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG+ WDLR+ QPYE Y+ +F IPIGKNGD YDRYLVR+EEMRQS II Q I
Sbjct: 232 VMVRGSGLAWDLRRAQPYERYDEFDFQIPIGKNGDCYDRYLVRMEEMRQSLSIILQAIAK 291
Query: 579 LRSNKGPV-ISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
LR+ +G + KIT P+R +MK++ME LIHHFKL+TEGF+VP GE+Y+CVE PKGEF
Sbjct: 292 LRAPEGQGDVLARGKITPPSRSDMKTSMESLIHHFKLYTEGFHVPAGEVYACVEAPKGEF 351
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLV+DG NKPYR KIR+PGF HLQ++ M GH ++DV IIGT D+VFGEIDR
Sbjct: 352 GVYLVADGTNKPYRAKIRAPGFLHLQAMDHMSRGHQLADVAAIIGTMDVVFGEIDR 407
>gi|239947494|ref|ZP_04699247.1| NADH-quinone oxidoreductase subunit D [Rickettsia endosymbiont of
Ixodes scapularis]
gi|239921770|gb|EER21794.1| NADH-quinone oxidoreductase subunit D [Rickettsia endosymbiont of
Ixodes scapularis]
Length = 391
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 236/413 (57%), Positives = 301/413 (72%), Gaps = 27/413 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
K+ LN GPQHPA HGVLRLIL+++GEVV ADPHIGLLHR TEKL E +TYLQ++PY D
Sbjct: 6 KTITLNLGPQHPATHGVLRLILKMDGEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFD 65
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYVS MC EHA+ +A+E LL +IP RAQ+IRV+F E+TR+LNH + I S +LDIGA
Sbjct: 66 RLDYVSPMCQEHAFALAVESLLECEIPRRAQFIRVLFSELTRILNHTLNISSQALDIGAT 125
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
LL+ F ERE +++ YE VSG+RMH+ Y+RPGGV DLP+
Sbjct: 126 TPLLWLFEEREKIMEFYERVSGSRMHSNYFRPGGVVEDLPD------------------- 166
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
LL+ I+ F +FP + + E+LL +NR+WKQRLV IGVVS + A++ GF+GPM
Sbjct: 167 ------GLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVVSQKEAMNWGFSGPM 220
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
LRGSG+ WDLRK PY++Y+ ++F +PIGKNGD YDRY VR+ EM +S KIIKQCI+ +
Sbjct: 221 LRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESVKIIKQCIE--K 278
Query: 581 SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIY 640
KG V +++ K+T P R MK +ME +IHHFKL+TEG+ VP GE Y VE PKGEFG+Y
Sbjct: 279 MPKGAVKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGEFGVY 338
Query: 641 LVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
L S G N+PYR +I++PGFAHLQ L M GH+++DV+TII T DIVFGEIDR
Sbjct: 339 LYSTGNNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITIIATLDIVFGEIDR 391
>gi|254469443|ref|ZP_05082848.1| NADH dehydrogenase (quinone), D subunit [Pseudovibrio sp. JE062]
gi|211961278|gb|EEA96473.1| NADH dehydrogenase (quinone), D subunit [Pseudovibrio sp. JE062]
Length = 394
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 237/415 (57%), Positives = 305/415 (73%), Gaps = 25/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 5 QVRNFNINFGPQHPAAHGVLRLVLELDGEVVTRVDPHIGLLHRGTEKLIEHKTYLQAVPY 64
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHAY +A+E+LL I++P R Q IRV++ EI RLL+HL+ + + ++D+G
Sbjct: 65 FDRLDYVAPMNQEHAYALAVERLLGIEVPKRGQLIRVLYSEIGRLLSHLLNVTTQAMDVG 124
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F RE+L+ YE GARMHAAY RPGGV++DLP+
Sbjct: 125 ALTPPLWGFEPREELMGFYERGCGARMHAAYVRPGGVHQDLPQ----------------- 167
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD + ++ + F K +D+ E LLTDNRI+KQR V IGVV + A +MGF+G
Sbjct: 168 --------DLLDDMWNWCDPFLKTLDDIEGLLTDNRIFKQRNVDIGVVDLDEAWAMGFSG 219
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG KWDLRK QPYE Y+ + FDI IGKNGD YDRYL+R+ EMRQS +I+KQC++
Sbjct: 220 VMVRGSGAKWDLRKSQPYECYDEMEFDIAIGKNGDCYDRYLIRMFEMRQSVRIMKQCLEM 279
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L GPV S + K+ P R MK +ME LIHHFKL+TEG+ VP GEIY+ VE PKGEFG
Sbjct: 280 LGKETGPVSSTDGKVVPPKRGEMKRSMEALIHHFKLYTEGYKVPEGEIYAAVEAPKGEFG 339
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG NKPYR KI++PGFAHLQ+L + GHM++DV +IG+ DIVFGEIDR
Sbjct: 340 VYLVSDGTNKPYRCKIKAPGFAHLQALDYLCRGHMLADVAAVIGSIDIVFGEIDR 394
>gi|347760095|ref|YP_004867656.1| NADH-quinone oxidoreductase subunit D [Gluconacetobacter xylinus
NBRC 3288]
gi|347579065|dbj|BAK83286.1| NADH-quinone oxidoreductase chain D [Gluconacetobacter xylinus NBRC
3288]
Length = 418
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 237/417 (56%), Positives = 304/417 (72%), Gaps = 27/417 (6%)
Query: 277 VIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSL 336
V+EI S+ LNFGPQHP+AHGVLRL+LE+EGEVV +A PH+GLLHR TEKL E +TY ++L
Sbjct: 29 VVEIDSHALNFGPQHPSAHGVLRLVLEMEGEVVARAIPHVGLLHRGTEKLIEYKTYPKAL 88
Query: 337 PYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLD 396
PY DRLDYVS MC E A+ +A+EKLL I+ P RA++IRVMF EITR+LNH++ + S LD
Sbjct: 89 PYFDRLDYVSPMCEEQAFALAVEKLLGIEAPERAKWIRVMFAEITRILNHILNLTSFGLD 148
Query: 397 IGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKA 456
GA+ L+ + ERE L++ YEA SGAR HA Y RPGGV RDLP
Sbjct: 149 CGALTPALWGYEEREKLIEFYEAASGARFHANYVRPGGVARDLP---------------- 192
Query: 457 TKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGF 516
L + I D+ + FPK ID+ E+LLT+NRIWKQR VGIGV + E+AL+ GF
Sbjct: 193 ---------AGLEERIADWAHTFPKWIDDLESLLTNNRIWKQRTVGIGVFTTEQALAWGF 243
Query: 517 TGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCI 576
+GP LR SGV WDLR+ QPY+ Y+ + F++P+G+ GD YDRYL+R+ EMR+S KI+ QC+
Sbjct: 244 SGPCLRASGVPWDLRRSQPYDNYHKVEFNVPVGRQGDCYDRYLIRVAEMRESVKIVNQCL 303
Query: 577 KWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
+ +R GPV ++KIT P R MK +ME LIHHFKLFTEG++VP G Y+ E PKGE
Sbjct: 304 EQIRP--GPVKVQDHKITPPPRREMKRSMEALIHHFKLFTEGYHVPPGATYTVTETPKGE 361
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YLV+DG+N+PYR KIR GF+HLQ++ EM HM++D V IIG+ D+VFGEIDR
Sbjct: 362 FGVYLVADGSNRPYRCKIRPTGFSHLQAIDEMSRRHMLADAVAIIGSLDLVFGEIDR 418
>gi|145232479|ref|XP_001399684.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus niger CBS
513.88]
gi|134056601|emb|CAK47676.1| unnamed protein product [Aspergillus niger]
gi|350634565|gb|EHA22927.1| hypothetical protein ASPNIDRAFT_206795 [Aspergillus niger ATCC
1015]
Length = 476
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 237/415 (57%), Positives = 297/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E ++Y+Q+LPY
Sbjct: 89 KIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKSYMQALPY 148
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLNI+IP RA+YIR +F E+TR+LNHLM + SH++D+G
Sbjct: 149 FDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKYIRTLFGEMTRILNHLMSVLSHAMDVG 208
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV +DLP
Sbjct: 209 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDLPL----------------- 251
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E LLTDNRIWK R G+GVV AL+M FTG
Sbjct: 252 --------GLLDDIYQWATQFGDRIDETEELLTDNRIWKARTQGVGVVKAADALNMSFTG 303
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y+ + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 304 VMLRGSGVPWDIRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNQ 363
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + KI+ P R MK NME LIHHF LFT+G+ VP GE YS +E PKGE G
Sbjct: 364 MPA--GPVRVEDYKISPPPRAAMKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMG 421
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++LVSDG+ +PYR KIR+PGFAHL ++ GH+++D V IIGT D+VFGE+DR
Sbjct: 422 VFLVSDGSERPYRCKIRAPGFAHLGGFDQVSRGHLLADAVAIIGTMDLVFGEVDR 476
>gi|119481603|ref|XP_001260830.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, putative
[Neosartorya fischeri NRRL 181]
gi|119408984|gb|EAW18933.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, putative
[Neosartorya fischeri NRRL 181]
Length = 470
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 237/415 (57%), Positives = 298/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILEL GE + ++DPH+GLLHR TEKL E +TY+Q+LPY
Sbjct: 83 KIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRSDPHVGLLHRGTEKLIEYKTYMQALPY 142
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLNI+IP RA++IR +F EITR+LNHLM + SH++D+G
Sbjct: 143 FDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKWIRTLFGEITRILNHLMSVLSHAMDVG 202
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV +DLP
Sbjct: 203 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDLPL----------------- 245
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E LLTDNRIWK R G+GVV+ AL+M FTG
Sbjct: 246 --------GLLDDIYQWATQFGDRIDETEELLTDNRIWKARTQGVGVVTAADALNMSFTG 297
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y+ + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 298 VMLRGSGVPWDIRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNK 357
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + KI+ P R MK NME LIHHF LFT+G+ VP GE YS +E PKGE G
Sbjct: 358 MPA--GPVRVEDYKISPPPRAAMKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMG 415
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++LVSDG+ +PYR KIR+PGFAHL ++ GH+++D V IIGT D+VFGE+DR
Sbjct: 416 VFLVSDGSERPYRCKIRAPGFAHLGGFDQISRGHLLADAVAIIGTMDLVFGEVDR 470
>gi|258576269|ref|XP_002542316.1| NADH dehydrogenase (quinone), D subunit [Uncinocarpus reesii 1704]
gi|237902582|gb|EEP76983.1| NADH dehydrogenase (quinone), D subunit [Uncinocarpus reesii 1704]
Length = 470
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 237/415 (57%), Positives = 298/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E +TY+Q+LPY
Sbjct: 83 KIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYMQALPY 142
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLNI+IP RA++IR +F EITR+LNHLM + SH++D+G
Sbjct: 143 FDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKWIRTLFGEITRVLNHLMSVLSHAMDVG 202
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV++DLP
Sbjct: 203 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDLPL----------------- 245
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E LLTDNRIWK R G+GVVS AL+ GFTG
Sbjct: 246 --------GLLDDIYQWATQFGDRIDETEELLTDNRIWKARTQGVGVVSAADALNFGFTG 297
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ WD+RK QPY+ Y+ + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 298 VMLRGSGIPWDIRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNK 357
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + KI P R MK NME LIHHF LFT+G+ VP GE YS +E PKGE G
Sbjct: 358 MPA--GPVRVEDYKINPPPRAAMKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMG 415
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+++VSDG+ +PYR KIR+PGFAHL ++ GH+++D V IIGT D+VFGE+DR
Sbjct: 416 VFVVSDGSERPYRCKIRAPGFAHLACFDQISRGHLLADAVAIIGTMDLVFGEVDR 470
>gi|383483825|ref|YP_005392738.1| NADH dehydrogenase subunit D [Rickettsia parkeri str. Portsmouth]
gi|378936179|gb|AFC74679.1| NADH dehydrogenase subunit D [Rickettsia parkeri str. Portsmouth]
Length = 391
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 235/413 (56%), Positives = 299/413 (72%), Gaps = 27/413 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
K+ LN GPQHPA HGVLRLILE++GEVV A PHIGLLHR TEKL E +TYLQ++PY D
Sbjct: 6 KTITLNLGPQHPATHGVLRLILEMDGEVVNNAAPHIGLLHRGTEKLIEHKTYLQAIPYFD 65
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYVS MC EHA+ +A+E LL ++P RAQ+IRV+F E+TR+LNH + IGS +LDIGA
Sbjct: 66 RLDYVSPMCQEHAFALAVESLLECEVPRRAQFIRVLFSELTRILNHTLNIGSQALDIGAT 125
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
LL+ F ERE +++ YE VSG+RMH+ Y+RPGGV DLPE
Sbjct: 126 TPLLWLFEEREKIMEFYEHVSGSRMHSNYFRPGGVAADLPE------------------- 166
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
LL+ I+ F +FP + + E+LL +NR+WKQRLV IGV S + A+ GF+GPM
Sbjct: 167 ------GLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVASQKEAMDWGFSGPM 220
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
LRGSG+ WDLRK PY++Y+ ++F +PIGKNGD YDRY VR+ EM +S KIIKQCI+ +
Sbjct: 221 LRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQCIE--K 278
Query: 581 SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIY 640
KG + +++ K+T P R MK +ME +IHHFKL+TEG+ VP GE Y VE PKGEFG+Y
Sbjct: 279 MPKGAIKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGEFGVY 338
Query: 641 LVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
L S G N+PYR +I++PGFAHLQ L M GH+++DV+TII T DIVFGEIDR
Sbjct: 339 LYSQGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITIIATLDIVFGEIDR 391
>gi|269958790|ref|YP_003328578.1| NADH dehydrogenase subunit D [Anaplasma centrale str. Israel]
gi|269848620|gb|ACZ49264.1| NADH dehydrogenase subunit D [Anaplasma centrale str. Israel]
Length = 395
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 240/415 (57%), Positives = 295/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK LNFGPQHPAAHGV+RL+LE+ GEVV + DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 8 QIKPMTLNFGPQHPAAHGVMRLVLEMSGEVVERVDPHIGLLHRGTEKLIEYKTYLQALPY 67
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVS M EHAY + +EKLL +P RA+YIRV+F E+TR+LNHL+ + S +LD G
Sbjct: 68 FDRLDYVSPMSQEHAYSLCVEKLLQCVVPPRAKYIRVIFCELTRVLNHLLNVSSQALDTG 127
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A LL+ F ERE LL YE SGAR HAAY RPGG+ D+P+
Sbjct: 128 ATTPLLWMFEERERLLSFYERASGARFHAAYIRPGGIAADVPD----------------- 170
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I FT FPK +D+ + LLT+N IWKQR V IGVVS +AL GF+G
Sbjct: 171 --------GLLDDIHAFTESFPKLLDDVDGLLTENSIWKQRNVDIGVVSKAQALDWGFSG 222
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLR G+ WDLRK QPYEIY L+F +P+G NGD YDRYLVR+ EMR+S II+QC+
Sbjct: 223 PMLRACGIPWDLRKSQPYEIYETLDFKVPVGSNGDCYDRYLVRMAEMRESISIIRQCLNG 282
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ +GPV +++ KI P R +K +ME LIHHFKLF+EG+ VP GE Y VE PKGEFG
Sbjct: 283 I--PEGPVKTDDRKIAPPRREELKYSMEALIHHFKLFSEGYKVPEGEAYVAVEAPKGEFG 340
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDG N+PYR +IR+PGFAHLQ++ M GHM++D+ IIG+ DIVFGEIDR
Sbjct: 341 VYIVSDGTNRPYRCRIRAPGFAHLQAIDAMARGHMLADLTAIIGSLDIVFGEIDR 395
>gi|218534458|sp|A8F1C5.2|NUOD_RICM5 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
Length = 391
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 236/413 (57%), Positives = 299/413 (72%), Gaps = 27/413 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
K+ LN GPQHPA HGVLRLILE++GEVV A PHIGLLHR TEKL E +TYLQ++PY D
Sbjct: 6 KTITLNLGPQHPATHGVLRLILEMDGEVVNNAVPHIGLLHRGTEKLIEHKTYLQAIPYFD 65
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYVS MC EHA+ +A+E LL ++P RAQ+IRV+F E+TR+LNH + IGS +LDIGA
Sbjct: 66 RLDYVSPMCQEHAFALAVESLLECEVPRRAQFIRVLFSELTRILNHTLNIGSQALDIGAT 125
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
LL+ F ERE +++ YE VSG+RMH+ Y+RPGGV DLPE
Sbjct: 126 TPLLWLFEEREKIMEFYEHVSGSRMHSNYFRPGGVAADLPE------------------- 166
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
LL+ I+ F +FP + + E+LL +NR+WKQRLV IGV S + A+ GF+GPM
Sbjct: 167 ------GLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVASQKEAMDWGFSGPM 220
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
LRGSG+ WDLRK PY++Y+ ++F +PIGKNGD YDRY VR+ EM +S KIIKQCI+ +
Sbjct: 221 LRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQCIE--K 278
Query: 581 SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIY 640
KG V +++ K+T P R MK +ME +IHHFKL+TEG+ VP GE Y VE PKGEFG+Y
Sbjct: 279 MPKGAVKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGEFGVY 338
Query: 641 LVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
L S G N+PYR +I++PGFAHLQ L M GH+++DV+TII T DIVFGEIDR
Sbjct: 339 LYSQGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITIIATLDIVFGEIDR 391
>gi|407781579|ref|ZP_11128797.1| NADH dehydrogenase, D subunit [Oceanibaculum indicum P24]
gi|407207796|gb|EKE77727.1| NADH dehydrogenase, D subunit [Oceanibaculum indicum P24]
Length = 392
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 236/416 (56%), Positives = 303/416 (72%), Gaps = 27/416 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
+ IK LNFGPQHPAAHGVLRL+LE++GEV+ +ADPHIGLLHR TEKL E +TYLQ++P
Sbjct: 4 VTIKPMTLNFGPQHPAAHGVLRLVLEMDGEVIERADPHIGLLHRGTEKLIEYKTYLQAVP 63
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y DRLDYVS MC EHAY +A+EKLL I +P RAQYIRV++ EITR+LNHL+ I + +LD+
Sbjct: 64 YFDRLDYVSPMCQEHAYALAVEKLLGITVPARAQYIRVLYAEITRILNHLLNITTFALDV 123
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GAM LL+ F ERE L++ YE V GAR+H+AY+RPGGV++DLP
Sbjct: 124 GAMTPLLWGFEEREKLMEFYERVCGARLHSAYFRPGGVHQDLP----------------- 166
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
L D I +T FPK ID+ E+LLT+NRI+KQR V IG++S E A + GF+
Sbjct: 167 --------AGLADDILAWTETFPKIIDDIESLLTENRIFKQRTVDIGIMSAEEAQAWGFS 218
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GP LR S V WDLRK QPY+ Y ++FD+ IGK GD Y RYLVR+ EMR+S KI++Q I+
Sbjct: 219 GPSLRASNVPWDLRKSQPYDAYADMDFDVVIGKTGDCYARYLVRMAEMRESLKIMRQAIE 278
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+ +GPV + + K+ P R MK +ME LIHHFKL+TEG++VP GE Y+ VE PKGEF
Sbjct: 279 --KMPEGPVKTTDRKVAPPKRGEMKQSMEALIHHFKLYTEGYHVPAGETYTAVEAPKGEF 336
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLV+DG+N+PYR IR+PGF L ++ M GHM++D V ++G+ DIVFGEIDR
Sbjct: 337 GVYLVADGSNRPYRCHIRAPGFPFLAAMDYMCKGHMLADSVAVLGSLDIVFGEIDR 392
>gi|296116532|ref|ZP_06835142.1| NADH dehydrogenase subunit D [Gluconacetobacter hansenii ATCC
23769]
gi|295976744|gb|EFG83512.1| NADH dehydrogenase subunit D [Gluconacetobacter hansenii ATCC
23769]
Length = 416
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 236/417 (56%), Positives = 301/417 (72%), Gaps = 27/417 (6%)
Query: 277 VIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSL 336
V+EI S+ LNFGPQHP+AHGVLRL+LE+EGEVV +A PH+GLLHR TEKL E +TY ++L
Sbjct: 27 VVEIDSHALNFGPQHPSAHGVLRLVLEMEGEVVTRAIPHVGLLHRGTEKLIEYKTYPKAL 86
Query: 337 PYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLD 396
PY DRLDYVS MC E A+ +A EKLLN++IP RA++IRVMF EITR+LNH++ + S LD
Sbjct: 87 PYFDRLDYVSPMCEEQAFALATEKLLNLEIPDRAKWIRVMFAEITRILNHILNLTSFGLD 146
Query: 397 IGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKA 456
GA+ L+ + ERE LL+ YEA SGAR HA Y+RPGGV RDLP
Sbjct: 147 CGALTPALWGYEEREKLLEFYEAASGARFHANYFRPGGVARDLP---------------- 190
Query: 457 TKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGF 516
L + I +T FP+ ID+ E+LLT+NRIWKQR VGIGV + E+AL+ GF
Sbjct: 191 ---------AGLEERIAQWTTEFPRWIDDLESLLTNNRIWKQRTVGIGVFTSEQALAWGF 241
Query: 517 TGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCI 576
+GP LR SGV WDLR+ QPY+ Y+ + F++P+ + GD YDRYLVR+ EMR+S KI+ QC+
Sbjct: 242 SGPCLRASGVPWDLRRSQPYDNYDKVEFNVPVARQGDCYDRYLVRVAEMRESVKIVAQCL 301
Query: 577 KWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
++ GP+ + KI P R MK +ME LIHHFKLFTEG++VP G Y+ VE PKGE
Sbjct: 302 AQMKP--GPIKVQDRKIAPPPRREMKRSMEALIHHFKLFTEGYHVPPGATYTAVESPKGE 359
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YLV+DG+N+PYR KIR GFAHLQ++ M HM++D V IIG+ D+VFGEIDR
Sbjct: 360 FGVYLVADGSNRPYRCKIRPTGFAHLQAMDVMARRHMLADAVAIIGSLDLVFGEIDR 416
>gi|302414534|ref|XP_003005099.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Verticillium
albo-atrum VaMs.102]
gi|261356168|gb|EEY18596.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Verticillium
albo-atrum VaMs.102]
Length = 472
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 235/432 (54%), Positives = 306/432 (70%), Gaps = 31/432 (7%)
Query: 262 TDYGFVGHPFRKDFPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHR 321
TD+G P + +++ Y +NFGPQHPAAHGVLRLILE+ GE + +ADPH+GLLHR
Sbjct: 72 TDHG----PAKDGIEDKKVRHYTVNFGPQHPAAHGVLRLILEINGEEIVRADPHVGLLHR 127
Query: 322 ATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEIT 381
TEKL E +TYLQ+LPY DRLDYVSMM NE + +A+EKLLNI+IP RA++IR +F E+T
Sbjct: 128 GTEKLIEYKTYLQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPDRAKWIRTLFGELT 187
Query: 382 RLLNHLMWIGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPE 441
R+LNHLM + SH++D+GA+ L+ F ERE L++ YE VSGAR+HAAY RPGGV++D+P
Sbjct: 188 RVLNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPV 247
Query: 442 IMPQYKSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLV 501
LLD I + +F +DE E +LTDNRIW QRL
Sbjct: 248 -------------------------GLLDDIYQWATQFGDRLDETEEMLTDNRIWLQRLQ 282
Query: 502 GIGVVSPERALSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVR 561
G+GVVS AL++ FTGPMLRGSGV WD+RK QPY+ Y+ + FD+P+G GD YDRYLVR
Sbjct: 283 GVGVVSAAEALNLSFTGPMLRGSGVPWDIRKSQPYDAYDQVEFDVPVGVRGDCYDRYLVR 342
Query: 562 IEEMRQSNKIIKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYV 621
+EE RQS +II QC+ + + GPV + K++ P R MK NME LIHHF L+T+G+ V
Sbjct: 343 MEEFRQSLRIIHQCLNKMPA--GPVRVEDYKVSPPPRAAMKENMEALIHHFLLYTKGYAV 400
Query: 622 PLGEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTII 681
P GE YS +E PKGE G+++VSDG+ +PYR+ IR+PGFAHL + GHM++D V +I
Sbjct: 401 PPGETYSAIEAPKGEMGVFVVSDGSERPYRVHIRAPGFAHLAGFDHVCKGHMLADAVAVI 460
Query: 682 GTQDIVFGEIDR 693
GT D+VFGE+DR
Sbjct: 461 GTMDLVFGEVDR 472
>gi|260574761|ref|ZP_05842764.1| NADH dehydrogenase I, D subunit [Rhodobacter sp. SW2]
gi|259023178|gb|EEW26471.1| NADH dehydrogenase I, D subunit [Rhodobacter sp. SW2]
Length = 411
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 236/414 (57%), Positives = 306/414 (73%), Gaps = 26/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
I+++ +NFGPQHPAAHGVLRL+LEL+GE+V +ADPHIGLLHR TEKL E RTYLQ+LPYM
Sbjct: 24 IRNFNINFGPQHPAAHGVLRLVLELDGEIVERADPHIGLLHRGTEKLMESRTYLQNLPYM 83
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHAY +AIE+L IP RA IRV+F EI RLLNHLM + + ++D+GA
Sbjct: 84 DRLDYVAPMNQEHAYCLAIERLTGTVIPRRASLIRVLFSEIGRLLNHLMNVTTGAMDVGA 143
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F RE+L+ YE SGARMHAAY+RPGGV++DL
Sbjct: 144 LTPPLWGFTAREELMGFYERASGARMHAAYFRPGGVHQDL-------------------- 183
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D IE + FPK +D+ + L+T+NR++KQR V I ++S + AL GF+G
Sbjct: 184 -----DARLIDDIETWAIGFPKLLDDLDGLVTENRVFKQRTVDIAIISQQDALDWGFSGV 238
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG+ WDLR+ QPYE Y+ +F +PIGKNGD YDRYL+R+EEMRQS +II+Q + L
Sbjct: 239 MVRGSGMAWDLRRAQPYECYDEFDFLVPIGKNGDCYDRYLLRMEEMRQSTRIIRQALTKL 298
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
R+ G V++ KIT P R MK++ME LIHHFKL+TEGF+VP G+IY+ VE PKGEFG+
Sbjct: 299 RAEPGEVLA-RGKITPPKRGEMKTSMEALIHHFKLYTEGFHVPAGQIYAAVEAPKGEFGV 357
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+NKPYRIK+R+PG+AHLQ++ M +GH ++DV I+ T D+VFGEIDR
Sbjct: 358 YLVSDGSNKPYRIKLRAPGYAHLQAMDFMAAGHQLADVAAIMATIDVVFGEIDR 411
>gi|407929548|gb|EKG22365.1| NADH-quinone oxidoreductase subunit D [Macrophomina phaseolina MS6]
Length = 471
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 243/425 (57%), Positives = 298/425 (70%), Gaps = 27/425 (6%)
Query: 269 HPFRKDFPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAE 328
H D +I+ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E
Sbjct: 74 HAEEADAKGRKIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIE 133
Query: 329 QRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLM 388
RTYLQ+LPY DRLDYVSMM NE Y +A+EKLLNI+IP RA+YIR MF EITR+LNHLM
Sbjct: 134 YRTYLQALPYFDRLDYVSMMTNEQCYSLAVEKLLNIEIPERAKYIRTMFGEITRILNHLM 193
Query: 389 WIGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKS 448
+ SH++D+GA+ L+ F ERE L++ YE VSGAR+HAAY RPGGV +DLP
Sbjct: 194 SVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDLPL------- 246
Query: 449 SIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSP 508
LLD I + +F IDE E LLTDNRIW R GIGVVS
Sbjct: 247 ------------------GLLDDIYQWATQFGDRIDETEELLTDNRIWIGRTKGIGVVSA 288
Query: 509 ERALSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQS 568
AL+ FTG MLRGSGV WD+RK QPY+ Y+ + FD+P+G+NGD YDRYL R+EE RQS
Sbjct: 289 ADALNYSFTGVMLRGSGVPWDIRKSQPYDAYDKVEFDVPVGQNGDCYDRYLCRMEEFRQS 348
Query: 569 NKIIKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYS 628
+II QC+ + + GPV + KI P R MK NME LIHHF L+++G+ VP GE YS
Sbjct: 349 LRIIHQCLNDMPA--GPVKVEDYKIAPPPRAAMKENMEALIHHFLLYSKGYSVPPGETYS 406
Query: 629 CVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVF 688
+E PKGE G++LVSDG+ +PYR KIR+PGFAHL ++ GH+++D V IIGT D+VF
Sbjct: 407 AIEAPKGEMGVFLVSDGSERPYRCKIRAPGFAHLGCFDQISRGHLLADAVAIIGTMDLVF 466
Query: 689 GEIDR 693
GE+DR
Sbjct: 467 GEVDR 471
>gi|261196648|ref|XP_002624727.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Ajellomyces
dermatitidis SLH14081]
gi|239595972|gb|EEQ78553.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Ajellomyces
dermatitidis SLH14081]
gi|239609551|gb|EEQ86538.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Ajellomyces
dermatitidis ER-3]
gi|327350213|gb|EGE79070.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Ajellomyces
dermatitidis ATCC 18188]
Length = 479
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 236/415 (56%), Positives = 299/415 (72%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E +TYLQ+LPY
Sbjct: 92 KVRHYTVNFGPQHPAAHGVLRLILELNGEEIIRADPHVGLLHRGTEKLIEYKTYLQALPY 151
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLN++IP RA++IR +F EITR+LNHLM + SH++D+G
Sbjct: 152 FDRLDYVSMMTNEQCFSLAVEKLLNVEIPERAKWIRTLFGEITRVLNHLMSVLSHAMDVG 211
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV++D+P
Sbjct: 212 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPL----------------- 254
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E LLTDNRIWK R GIGVV+ AL+ GFTG
Sbjct: 255 --------GLLDDIYQWATQFGDRIDETEELLTDNRIWKARTQGIGVVTAAEALNYGFTG 306
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y+ + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 307 VMLRGSGVPWDVRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNK 366
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + KI+ P + MK NME LIHHF LFT+G+ VP GE YS +E PKGE G
Sbjct: 367 MPA--GPVRVEDYKISPPPKAAMKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMG 424
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++LVSDG+ +PYR KIR+PGFAHL ++ GH+++D V IIGT D+VFGE+DR
Sbjct: 425 VFLVSDGSERPYRCKIRAPGFAHLSCFDQVARGHLLADAVAIIGTMDLVFGEVDR 479
>gi|159479042|ref|XP_001697607.1| NADH:ubiquinone oxidoreductase 49 kDa ND7 subunit [Chlamydomonas
reinhardtii]
gi|34328792|gb|AAQ63700.1| NADH:ubiquinone oxidoreductase 49 kD subunit [Chlamydomonas
reinhardtii]
gi|158274217|gb|EDP00001.1| NADH:ubiquinone oxidoreductase 49 kDa ND7 subunit [Chlamydomonas
reinhardtii]
Length = 467
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 235/415 (56%), Positives = 298/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++ ++ LNFGPQHPAAHGVLRL+LE++GE++ +ADPHIGLLHR TEKL E +TYLQ LPY
Sbjct: 80 KVNNFTLNFGPQHPAAHGVLRLVLEMQGEIIMRADPHIGLLHRGTEKLLEYKTYLQGLPY 139
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMMC EH+YV+AIE+LLN+ +P+R QYIRV+F EITR+LNHL+ I HS+D+G
Sbjct: 140 FDRLDYVSMMCMEHSYVLAIEQLLNVSVPLRGQYIRVLFSEITRVLNHLLAITCHSMDVG 199
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+AF ERE L + YE VSGARMHAAY+R GGV +DLP
Sbjct: 200 ALTPFLWAFEEREKLFEFYERVSGARMHAAYFRVGGVSQDLPI----------------- 242
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LL + D+ +F +DE E LLT NRIWK+R V +G ++ + A G +G
Sbjct: 243 --------GLLRDVYDWARQFASRLDEMEELLTGNRIWKERTVDVGTITAQMAWDWGCSG 294
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
P+LR SG+ WDLRK QPY+ Y + F++PI +GD YDRYLVR++EMR+S +II QC+
Sbjct: 295 PILRASGIDWDLRKTQPYDAYGKMQFNVPIAGHGDCYDRYLVRLQEMRESLRIIYQCLNE 354
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ G S + K+ P+R MK +ME LIHHFKL+TEGF+VP GE Y VE PKGEFG
Sbjct: 355 M--PDGLYKSPDGKVCPPSRSTMKQSMEALIHHFKLYTEGFHVPAGETYRAVEAPKGEFG 412
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVS G N+PYR KIRSPG+AHLQ + G M++DVVTIIGT D+VFGEIDR
Sbjct: 413 VYLVSRGGNRPYRCKIRSPGYAHLQMTDVISRGAMLADVVTIIGTLDVVFGEIDR 467
>gi|240279627|gb|EER43132.1| NADH dehydrogenase I [Ajellomyces capsulatus H143]
gi|325092756|gb|EGC46066.1| NADH dehydrogenase I [Ajellomyces capsulatus H88]
Length = 479
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 236/415 (56%), Positives = 298/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E +TY+Q+LPY
Sbjct: 92 KIRHYTVNFGPQHPAAHGVLRLILELNGEEIIRADPHVGLLHRGTEKLIEYKTYMQALPY 151
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLN++IP RA++IR +F EITR+LNHLM + SH++D+G
Sbjct: 152 FDRLDYVSMMTNEQCFSLAVEKLLNVEIPDRAKWIRTLFGEITRILNHLMSVLSHAMDVG 211
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV++D+P
Sbjct: 212 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPL----------------- 254
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E LLTDNRIWK R G+GVV+ AL+ GFTG
Sbjct: 255 --------GLLDDIYQWATQFSDRIDETEELLTDNRIWKARTQGVGVVTAAEALNYGFTG 306
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 307 VMLRGSGVPWDIRKSQPYDAYGEVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNK 366
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + KI+ P R MK NME LIHHF LFT+G+ VP GE YS +E PKGE G
Sbjct: 367 MPA--GPVRVEDYKISPPPRAAMKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMG 424
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDG+ +PYR KIR+PGFAHL ++ GH+++D V IIGT D+VFGE+DR
Sbjct: 425 VYVVSDGSERPYRCKIRAPGFAHLSCFDQISRGHLLADAVAIIGTMDLVFGEVDR 479
>gi|225562811|gb|EEH11090.1| NADH dehydrogenase I [Ajellomyces capsulatus G186AR]
Length = 479
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 236/415 (56%), Positives = 298/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E +TY+Q+LPY
Sbjct: 92 KIRHYTVNFGPQHPAAHGVLRLILELNGEEIIRADPHVGLLHRGTEKLIEYKTYMQALPY 151
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLN++IP RA++IR +F EITR+LNHLM + SH++D+G
Sbjct: 152 FDRLDYVSMMTNEQCFSLAVEKLLNVEIPDRAKWIRTLFGEITRILNHLMSVLSHAMDVG 211
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV++D+P
Sbjct: 212 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPL----------------- 254
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E LLTDNRIWK R G+GVV+ AL+ GFTG
Sbjct: 255 --------GLLDDIYQWATQFSDRIDETEELLTDNRIWKARTQGVGVVTAAEALNYGFTG 306
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 307 VMLRGSGVPWDIRKSQPYDAYGEVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNK 366
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + KI+ P R MK NME LIHHF LFT+G+ VP GE YS +E PKGE G
Sbjct: 367 MPA--GPVRVEDYKISPPPRAAMKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMG 424
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDG+ +PYR KIR+PGFAHL ++ GH+++D V IIGT D+VFGE+DR
Sbjct: 425 VYVVSDGSERPYRCKIRAPGFAHLSCFDQISRGHLLADAVAIIGTMDLVFGEVDR 479
>gi|154279940|ref|XP_001540783.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Ajellomyces capsulatus NAm1]
gi|150412726|gb|EDN08113.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Ajellomyces capsulatus NAm1]
Length = 479
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 236/415 (56%), Positives = 298/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E +TY+Q+LPY
Sbjct: 92 KIRHYTVNFGPQHPAAHGVLRLILELNGEEIIRADPHVGLLHRGTEKLIEYKTYMQALPY 151
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLN++IP RA++IR +F EITR+LNHLM + SH++D+G
Sbjct: 152 FDRLDYVSMMTNEQCFSLAVEKLLNVEIPDRAKWIRTLFGEITRILNHLMSVLSHAMDVG 211
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV++D+P
Sbjct: 212 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPL----------------- 254
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E LLTDNRIWK R G+GVV+ AL+ GFTG
Sbjct: 255 --------GLLDDIYQWATQFSDRIDETEELLTDNRIWKARTQGVGVVTAAEALNYGFTG 306
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 307 VMLRGSGVPWDIRKSQPYDAYGEVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNK 366
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + KI+ P R MK NME LIHHF LFT+G+ VP GE YS +E PKGE G
Sbjct: 367 MPA--GPVRVEDYKISPPPRAAMKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMG 424
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDG+ +PYR KIR+PGFAHL ++ GH+++D V IIGT D+VFGE+DR
Sbjct: 425 VYVVSDGSERPYRCKIRAPGFAHLSCFDQISRGHLLADAVAIIGTMDLVFGEVDR 479
>gi|358365561|dbj|GAA82183.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Aspergillus kawachii
IFO 4308]
Length = 476
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 236/415 (56%), Positives = 297/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E ++Y+Q+LPY
Sbjct: 89 KIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKSYMQALPY 148
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLN++IP RA+YIR +F E+TR+LNHLM + SH++D+G
Sbjct: 149 FDRLDYVSMMTNEQCFSLAVEKLLNVEIPERAKYIRTLFGEMTRILNHLMSVLSHAMDVG 208
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV +DLP
Sbjct: 209 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDLPL----------------- 251
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E LLTDNRIWK R G+GVV AL+M FTG
Sbjct: 252 --------GLLDDIYQWATQFGDRIDETEELLTDNRIWKARTQGVGVVKAADALNMSFTG 303
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y+ + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 304 VMLRGSGVPWDIRKSQPYDAYDKVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNQ 363
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + KI+ P R MK NME LIHHF LFT+G+ VP GE YS +E PKGE G
Sbjct: 364 MPA--GPVRVEDYKISPPPRAAMKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMG 421
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++LVSDG+ +PYR KIR+PGFAHL ++ GH+++D V IIGT D+VFGE+DR
Sbjct: 422 VFLVSDGSERPYRCKIRAPGFAHLGGFDQVSRGHLLADAVAIIGTMDLVFGEVDR 476
>gi|389624553|ref|XP_003709930.1| hypothetical protein MGG_09285 [Magnaporthe oryzae 70-15]
gi|351649459|gb|EHA57318.1| hypothetical protein MGG_09285 [Magnaporthe oryzae 70-15]
gi|440471602|gb|ELQ40591.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Magnaporthe oryzae
Y34]
gi|440481960|gb|ELQ62490.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Magnaporthe oryzae
P131]
Length = 488
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 234/415 (56%), Positives = 297/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E +TYLQ+LPY
Sbjct: 101 KIRHYTVNFGPQHPAAHGVLRLILELSGEEIVRADPHVGLLHRGTEKLCEYKTYLQALPY 160
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLNI+IP RA+YIR MF EITR+LNHLM + SH++D+G
Sbjct: 161 FDRLDYVSMMTNEQCFALAVEKLLNIEIPERAKYIRTMFGEITRVLNHLMSVLSHAMDVG 220
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV++D+P
Sbjct: 221 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIP------------------ 262
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E +LTDNRIW RL G+GVVS + AL + FTG
Sbjct: 263 -------AGLLDDIYQWATQFGDRIDETEEMLTDNRIWINRLQGVGVVSAKEALDLSFTG 315
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK PY+ Y+ + FDIP+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 316 VMLRGSGVPWDIRKSSPYDAYDKVEFDIPVGLNGDCYDRYLCRMEEFRQSLRIIHQCLNQ 375
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + K++ P R MK NME LIHHF L+T+G+ VP G+ YS +E PKGE G
Sbjct: 376 MPA--GPVRVEDYKVSPPPRAAMKENMEALIHHFLLYTKGYAVPPGDTYSVIEAPKGEMG 433
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDG+ +PYR+ IR+PGFAHL + GH+++D V +IGT D+VFGE+DR
Sbjct: 434 VYVVSDGSERPYRVHIRAPGFAHLAGFDHVCKGHLLADAVAVIGTMDLVFGEVDR 488
>gi|200004026|ref|YP_002221361.1| NADH dehydrogenase subunit 7 [Blastocystis sp. DMP/02-328]
gi|198385450|gb|ACH86044.1| NADH dehydrogenase subunit 7 [Blastocystis sp. DMP/02-328]
Length = 393
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 232/418 (55%), Positives = 309/418 (73%), Gaps = 33/418 (7%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++KS+ LNFGPQHPA HGVLRLI+EL GE+V+ ADPHIG LHR TEKL E +TYLQ+LPY
Sbjct: 6 QLKSFTLNFGPQHPATHGVLRLIVELRGEIVQNADPHIGFLHRGTEKLIENKTYLQALPY 65
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDY+SM+ NEH YV+A+EKLL +P+RAQYIRV+F EITR+LNHL+ +GSH+LDIG
Sbjct: 66 FDRLDYISMIENEHCYVLAVEKLLKCNVPLRAQYIRVIFAEITRILNHLIGLGSHALDIG 125
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+ V+++ F ERE LL+ YE V+GARMHA Y+RPGGV +D+P
Sbjct: 126 STTVIIWLFEEREKLLEFYERVTGARMHANYFRPGGVRQDIP------------------ 167
Query: 459 ILNENRQGSLLDFIED---FTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMG 515
+ F+ D F F + +++ E LLT+NRIW++RLV IGV++ + AL +
Sbjct: 168 ----------VGFLNDLYIFCTEFNERLNDMEELLTNNRIWRERLVDIGVITKQDALDLN 217
Query: 516 FTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQC 575
TG +LR +GVKWDLRK PY+ Y+ ++FDIP+G NGD +DRY++RIEEMRQS +II QC
Sbjct: 218 LTGVLLRSTGVKWDLRKTFPYDAYSKVDFDIPVGTNGDCFDRYIIRIEEMRQSVRIINQC 277
Query: 576 IKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
I + ++GP+ ++N KI+ P++I +K +ME LI HFK+F+EGF V E+Y +E PKG
Sbjct: 278 INQI--SEGPIKTDNYKISIPSKIQIKQSMESLIDHFKIFSEGFKVDANEVYCSIEAPKG 335
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFGIYLVSDG+NKPYR ++S GF HLQS+ + GH+I+DV T+IG+ DIVFG+IDR
Sbjct: 336 EFGIYLVSDGSNKPYRCHLKSSGFIHLQSVDYLTRGHLIADVTTVIGSLDIVFGDIDR 393
>gi|200004054|ref|YP_002221388.1| NADH dehydrogenase subunit 7 [Blastocystis sp. NandII]
gi|198385476|gb|ACH86069.1| NADH dehydrogenase subunit 7 [Blastocystis sp. NandII]
Length = 393
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 232/415 (55%), Positives = 308/415 (74%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++KS+ LNFGPQHPA HGVLRLI+EL GE+V+KADPHIG LHR TEKL E +TYLQ+LPY
Sbjct: 6 QLKSFTLNFGPQHPATHGVLRLIIELRGEIVQKADPHIGFLHRGTEKLIENKTYLQALPY 65
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDY+SM+ NEH YV+A+EKLL K+P+RAQYIRV+F EITR++NHL+ +GSH+LDIG
Sbjct: 66 FDRLDYISMLENEHCYVLAVEKLLQCKVPLRAQYIRVIFAEITRIINHLIGLGSHALDIG 125
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+ V+++ F ERE LL+ YE +GARMH Y+RPGGV +D+P
Sbjct: 126 STTVIIWLFEEREKLLEFYERATGARMHGNYFRPGGVRQDIPL----------------- 168
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LL+ I F N F + +++ E LLT+NRIW++RLV IGV++ + AL + TG
Sbjct: 169 --------GLLNDIYIFCNEFNERLNDMEELLTNNRIWRERLVDIGVITKQDALDLNLTG 220
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
+LR +G+KWDLRK PY+ YN + F++P+G NGD +DRY++RIEEMRQS II QCI
Sbjct: 221 VLLRSTGIKWDLRKTFPYDAYNRVKFEVPVGSNGDCFDRYVMRIEEMRQSIYIISQCINQ 280
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ ++GP+ ++N KI+ P++I +K +ME LI HFK+F+EGF V E+Y +E PKGEFG
Sbjct: 281 I--SEGPIKTDNYKISIPSKIQIKQSMESLIDHFKIFSEGFKVEPNEVYCSIEAPKGEFG 338
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDG+NKPYR ++S GF HLQSL + GH+I+DV T+IG+ DIVFG+IDR
Sbjct: 339 IYLVSDGSNKPYRCHLKSSGFIHLQSLDYLTRGHLIADVTTVIGSLDIVFGDIDR 393
>gi|189203211|ref|XP_001937941.1| NADH dehydrogenase iron-sulfur protein 2, mitochondrial precursor
[Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187985040|gb|EDU50528.1| NADH dehydrogenase iron-sulfur protein 2, mitochondrial precursor
[Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 475
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 238/415 (57%), Positives = 296/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E RTYLQ+LPY
Sbjct: 88 KIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYRTYLQALPY 147
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLNI IPIRA+YIR MF EITR+LNHLM + SH++D+G
Sbjct: 148 FDRLDYVSMMTNEQCFSLAVEKLLNIDIPIRAKYIRTMFGEITRILNHLMSVLSHAMDVG 207
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV +DLP
Sbjct: 208 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDLPI----------------- 250
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E +LTDNRIW R G+GVVS A++ F+G
Sbjct: 251 --------GLLDDIYQWATQFGDRIDETEEMLTDNRIWIGRTKGVGVVSAADAINYSFSG 302
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y+ + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 303 VMLRGSGVPWDIRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNQ 362
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + KI P R MK NME LIHHF LF++G+ VP GE YS +E PKGE G
Sbjct: 363 MPA--GPVKVEDYKIAPPPRAAMKENMEALIHHFLLFSKGYTVPPGETYSAIEAPKGEMG 420
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++LVSDG+ +PYR KIR+PGFAHL + ++ GH+++D V IIGT D+VFGE+DR
Sbjct: 421 VFLVSDGSERPYRCKIRAPGFAHLACMDQISRGHLLADAVAIIGTMDLVFGEVDR 475
>gi|399992237|ref|YP_006572477.1| NADH-quinone oxidoreductase subunit D [Phaeobacter gallaeciensis
DSM 17395 = CIP 105210]
gi|398656792|gb|AFO90758.1| NADH-quinone oxidoreductase subunit D [Phaeobacter gallaeciensis
DSM 17395 = CIP 105210]
Length = 404
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 233/415 (56%), Positives = 307/415 (73%), Gaps = 26/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 16 KIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNLPY 75
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +AIEKL +++P RA IRV++ EI R+LNHL+ + + ++D+G
Sbjct: 76 FDRLDYVAPMNQEHAWCLAIEKLTGVEVPRRASLIRVLYSEIGRILNHLLNVTTQAMDVG 135
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE GAR+HAAY+RPGGV++DLP+
Sbjct: 136 ALTPPLWGFEEREKLMIFYERACGARLHAAYFRPGGVHQDLPD----------------- 178
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+L+D IE +T+ FP +D+ + LLT+NRI+KQR IGVV+ E L+ GF+G
Sbjct: 179 --------ALIDDIEAWTHTFPAVMDDIDGLLTENRIFKQRNADIGVVTEEDILNYGFSG 230
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG+ WDLR+ QPYE Y+ +F IP+GKNGD YDRYLVR+EEMRQS II+QCI
Sbjct: 231 VMVRGSGLAWDLRRSQPYECYDEFDFQIPVGKNGDCYDRYLVRMEEMRQSLSIIRQCIGK 290
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR G +++ K+T P R +MK++ME LIHHFKL+TEGF+VP GE+Y+ VE PKGEFG
Sbjct: 291 LRETPGDILA-RGKLTPPKRGDMKTSMESLIHHFKLYTEGFHVPAGEVYAAVEAPKGEFG 349
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLV+DG NKPYR K+R+PGF HLQ++ + GH ++DV IIGT D+VFGEIDR
Sbjct: 350 VYLVADGTNKPYRAKLRAPGFLHLQAMDYVAKGHQLADVAAIIGTMDVVFGEIDR 404
>gi|154248549|ref|YP_001419507.1| NADH dehydrogenase I subunit D [Xanthobacter autotrophicus Py2]
gi|218546715|sp|A7IPA4.1|NUOD_XANP2 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|154162634|gb|ABS69850.1| NADH dehydrogenase I, D subunit [Xanthobacter autotrophicus Py2]
Length = 402
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 236/418 (56%), Positives = 311/418 (74%), Gaps = 25/418 (5%)
Query: 276 PVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQS 335
P +++++++NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TYLQ+
Sbjct: 10 PADKVRNFQINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEAKTYLQA 69
Query: 336 LPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSL 395
+PY DRLDY + M EHA+ +A EKLL I++P R Q IRV++ EI RLL+HL+ + + ++
Sbjct: 70 VPYFDRLDYCAPMNQEHAFCLAAEKLLGIEVPKRGQLIRVLYSEIGRLLSHLLNVTTFAM 129
Query: 396 DIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNK 455
D+GA+ L+ F ERE L+ YE SG+RMHAAY+RPGGV++DLP
Sbjct: 130 DVGALTPPLWGFEEREKLMIFYERASGSRMHAAYFRPGGVHQDLPR-------------- 175
Query: 456 ATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMG 515
+L++ I F + F K +D+ + L+T+NRI+KQR V IGVVS E AL+ G
Sbjct: 176 -----------ALVEDIGAFCDPFLKLLDDLDGLVTENRIFKQRTVDIGVVSLEDALAWG 224
Query: 516 FTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQC 575
F+G M+RGSG WDLR+ QPYE Y+ L+FDIPIGK+GD YDRY+VR+EEMRQS KI+KQC
Sbjct: 225 FSGVMVRGSGAAWDLRRAQPYECYSELDFDIPIGKHGDCYDRYVVRMEEMRQSTKIMKQC 284
Query: 576 IKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
++ L GPV + +NKI P R MK +ME LIHHFKL+TEGF+VP G++Y+ VE PKG
Sbjct: 285 VERLLKEAGPVSTTDNKIVPPKRGEMKRSMEALIHHFKLYTEGFHVPAGDVYAAVEAPKG 344
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFG+YLVSDG NKPYR KIR+PGFAHLQ++ + GHM++DV ++G+ DIVFGE+DR
Sbjct: 345 EFGVYLVSDGTNKPYRCKIRAPGFAHLQAMDFLCRGHMLADVSAVLGSLDIVFGEVDR 402
>gi|414166630|ref|ZP_11422862.1| NADH-quinone oxidoreductase subunit D [Afipia clevelandensis ATCC
49720]
gi|410892474|gb|EKS40266.1| NADH-quinone oxidoreductase subunit D [Afipia clevelandensis ATCC
49720]
Length = 402
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 234/416 (56%), Positives = 312/416 (75%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL EQ+TYLQ++PY
Sbjct: 12 MRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEQKTYLQAIPYF 71
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +A EKLL I++P R Q IRV++ EI R+L+HL+ + + ++D+GA
Sbjct: 72 DRLDYVAPMNQEHAFCLAAEKLLGIQVPRRGQLIRVLYCEIGRILSHLLNVTTQAMDVGA 131
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHAA++R GGV++DLP
Sbjct: 132 LTPPLWGFEEREKLMVFYERASGSRMHAAFFRVGGVHQDLPP------------------ 173
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
+L++ IE + + F K +D+ ETLLTDNRI+KQR V IGVV+ E+A GF+G
Sbjct: 174 -------ALINDIEAWCDPFLKVVDDLETLLTDNRIFKQRNVDIGVVTLEQAWEWGFSGV 226
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLRK QPYE Y+ ++FDIPIGKNGD YDRY +R+EEMRQS +I+KQCI+ L
Sbjct: 227 MVRGSGAAWDLRKSQPYECYDEMDFDIPIGKNGDCYDRYCIRMEEMRQSVRIMKQCIEKL 286
Query: 580 RS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
R+ +GPV+ ++NKI P R MK +ME LIHHFKL+TEG +VP GE+Y+ VE PKGEF
Sbjct: 287 RAPEGQGPVVVDDNKIAPPRRSEMKRSMEALIHHFKLYTEGVHVPAGEVYAAVEAPKGEF 346
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G++LV+DG NKPY+ KIR+PGFAHLQ++ + GH+++DV I+G+ DIVFGE+DR
Sbjct: 347 GVFLVADGTNKPYKCKIRAPGFAHLQAMDFICRGHLLADVSAILGSLDIVFGEVDR 402
>gi|400753910|ref|YP_006562278.1| NADH-quinone oxidoreductase subunit D [Phaeobacter gallaeciensis
2.10]
gi|398653063|gb|AFO87033.1| NADH-quinone oxidoreductase subunit D [Phaeobacter gallaeciensis
2.10]
Length = 403
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 233/415 (56%), Positives = 307/415 (73%), Gaps = 26/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 15 KIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNLPY 74
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +AIEKL +++P RA IRV++ EI R+LNHL+ + + ++D+G
Sbjct: 75 FDRLDYVAPMNQEHAWCLAIEKLTGVEVPRRASLIRVLYSEIGRILNHLLNVTTQAMDVG 134
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE GAR+HAAY+RPGGV++DLP+
Sbjct: 135 ALTPPLWGFEEREKLMIFYERACGARLHAAYFRPGGVHQDLPD----------------- 177
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+L+D IE +T+ FP +D+ + LLT+NRI+KQR IGVV+ E L+ GF+G
Sbjct: 178 --------ALIDDIEAWTHTFPAVMDDIDGLLTENRIFKQRNADIGVVTEEDILNYGFSG 229
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG+ WDLR+ QPYE Y+ +F IP+GKNGD YDRYLVR+EEMRQS II+QCI
Sbjct: 230 VMVRGSGLAWDLRRSQPYECYDEFDFQIPVGKNGDCYDRYLVRMEEMRQSLSIIRQCIGK 289
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR G +++ K+T P R +MK++ME LIHHFKL+TEGF+VP GE+Y+ VE PKGEFG
Sbjct: 290 LRETPGDILA-RGKLTPPNRRDMKTSMESLIHHFKLYTEGFHVPAGEVYAAVEAPKGEFG 348
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLV+DG NKPYR K+R+PGF HLQ++ + GH ++DV IIGT D+VFGEIDR
Sbjct: 349 VYLVADGTNKPYRAKLRAPGFLHLQAMDYVAKGHQLADVAAIIGTMDVVFGEIDR 403
>gi|299135029|ref|ZP_07028220.1| NADH dehydrogenase I, D subunit [Afipia sp. 1NLS2]
gi|298590006|gb|EFI50210.1| NADH dehydrogenase I, D subunit [Afipia sp. 1NLS2]
Length = 405
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 235/415 (56%), Positives = 306/415 (73%), Gaps = 27/415 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
+++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL EQ+TYLQ++PY D
Sbjct: 16 RNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEQKTYLQAIPYFD 75
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYV+ M EHA+ +A EKLL I +P R Q IRV++ EI R+L+HL+ + + ++D+GA+
Sbjct: 76 RLDYVAPMNQEHAFCLAAEKLLGITVPRRGQLIRVLYCEIGRILSHLLNVTTQAMDVGAL 135
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
L+ F ERE L+ YE SG+RMHAA++R GGV++DLP
Sbjct: 136 TPPLWGFEEREKLMMFYERASGSRMHAAFFRIGGVHQDLPP------------------- 176
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
L+D I+ + + FP+ +D+ E LLTDNRI+KQR V IGVV+ E+A GF+G M
Sbjct: 177 ------KLIDDIDAWCDAFPEKVDDLEVLLTDNRIFKQRNVDIGVVTLEQAWEWGFSGVM 230
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
+RGSG WDLRK QPYE Y ++FDIPIGKNGD YDRY +RIEEM QS +I+KQCI LR
Sbjct: 231 VRGSGAAWDLRKAQPYECYAEMDFDIPIGKNGDCYDRYCIRIEEMHQSVRIMKQCIAKLR 290
Query: 581 S--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ +GPV+ +NKIT P R MK +ME LIHHFKL+TEG +VP GE+Y+ VE PKGEFG
Sbjct: 291 APDGQGPVVIEDNKITPPRRGEMKRSMEALIHHFKLYTEGVHVPAGEVYAAVEAPKGEFG 350
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLV+DG NKPY+ KIR+PGFAHLQ++ + GH+++DV I+G+ DIVFGE+DR
Sbjct: 351 VYLVADGTNKPYKCKIRAPGFAHLQAMDFICKGHLLADVSAILGSLDIVFGEVDR 405
>gi|390167266|ref|ZP_10219261.1| NADH dehydrogenase subunit D [Sphingobium indicum B90A]
gi|389590115|gb|EIM68118.1| NADH dehydrogenase subunit D [Sphingobium indicum B90A]
Length = 411
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 229/415 (55%), Positives = 303/415 (73%), Gaps = 26/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRL++EL+GE+V + DPH+GLLHR TEKL E +TYLQ+LPY
Sbjct: 23 EIQNYTINFGPQHPAAHGVLRLVMELDGEIVERCDPHVGLLHRGTEKLIEHKTYLQALPY 82
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDY S M EH+YV+A+EKLLN+++PIRAQY+RV F E+TR+ NH++ +GSH +D+G
Sbjct: 83 FDRLDYCSPMGMEHSYVLAVEKLLNLEVPIRAQYLRVFFAELTRIKNHMLNLGSHVMDVG 142
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM L+ F RED ++ YE SGARMHAAY+RPGGV++D+P +
Sbjct: 143 AMTPNLWLFELREDCMNFYERASGARMHAAYFRPGGVHQDVPLKL--------------- 187
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L D + R P+ ++ +L+ DNRI+KQR V I VVS E AL GF+G
Sbjct: 188 ---------LTDIADWLDTRLPRLFEDAISLVADNRIFKQRNVDIAVVSKEDALKWGFSG 238
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRK QPY++Y+ + FDIP+G N D YDR++VR+EE+RQS +I+KQC+
Sbjct: 239 PMLRGSGIAWDLRKAQPYDVYDRMEFDIPVGTNFDCYDRFMVRVEEVRQSARIMKQCLAQ 298
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ +GPV+S + K+ P R MK +ME LIHHFKL+TEGF+VP GE+Y E PKGEFG
Sbjct: 299 M--PEGPVLSLDTKVAPPKRGEMKRSMEALIHHFKLYTEGFHVPAGEVYVATESPKGEFG 356
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLV+DG+NKPYR KIR F+HLQ++ M+ GHM++D ++G DIVFGE DR
Sbjct: 357 VYLVADGSNKPYRCKIRPTAFSHLQAMDFMMKGHMLADTTAVLGAMDIVFGECDR 411
>gi|56416798|ref|YP_153872.1| NADH dehydrogenase subunit D [Anaplasma marginale str. St. Maries]
gi|254995000|ref|ZP_05277190.1| NADH dehydrogenase subunit D [Anaplasma marginale str. Mississippi]
gi|81359082|sp|Q5PAR3.1|NUOD_ANAMM RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|56388030|gb|AAV86617.1| NADH dehydrogenase chain D [Anaplasma marginale str. St. Maries]
Length = 398
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 240/414 (57%), Positives = 294/414 (71%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
IK LNFGPQHPAAHGV+RLILE+ GEV+ + DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 12 IKPMTLNFGPQHPAAHGVMRLILEMSGEVIERIDPHIGLLHRGTEKLIEYKTYLQALPYF 71
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVS M EHAY + +EKLL +P RA+YIRV+F E+TR+LNHL+ + S +LD GA
Sbjct: 72 DRLDYVSPMSQEHAYSLCVEKLLQCVVPPRAKYIRVIFCELTRVLNHLLNVSSQALDTGA 131
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
LL+ F ERE LL YE SGAR HAAY RPGG+ D+P+
Sbjct: 132 TTPLLWMFEERERLLSFYERASGARFHAAYIRPGGIAADVPD------------------ 173
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD I FT FPK +D+ + LLT+N IWKQR V IGVVS +AL GF+GP
Sbjct: 174 -------GLLDDIHAFTESFPKLLDDVDGLLTENSIWKQRNVDIGVVSKAQALDWGFSGP 226
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLR G+ WDLRK QPYEIY L+F +P+G NGD YDRYLVR+ EMR+S II+QC+ +
Sbjct: 227 MLRACGIPWDLRKSQPYEIYETLDFKVPVGSNGDCYDRYLVRMAEMRESISIIRQCLNGI 286
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+GPV +++ KI P R +K +ME LIHHFKLF+EG+ VP GE Y VE PKGEFG+
Sbjct: 287 --PEGPVKTDDRKIAPPRREELKYSMEALIHHFKLFSEGYKVPEGEAYVAVEAPKGEFGV 344
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
Y+VSDG N+PYR +IR+PGFAHLQ++ M GHM++D+ IIG+ DIVFGEIDR
Sbjct: 345 YIVSDGTNRPYRCRIRAPGFAHLQAIDAMARGHMLADLTAIIGSLDIVFGEIDR 398
>gi|383483260|ref|YP_005392174.1| NADH dehydrogenase subunit D [Rickettsia montanensis str. OSU
85-930]
gi|378935614|gb|AFC74115.1| NADH dehydrogenase subunit D [Rickettsia montanensis str. OSU
85-930]
Length = 391
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 235/413 (56%), Positives = 299/413 (72%), Gaps = 27/413 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
K+ LN GPQHPA HGVLRLILE++GEVV A PHIGLLHR TEKL E +TYLQ++PY D
Sbjct: 6 KTITLNLGPQHPATHGVLRLILEMDGEVVNNAAPHIGLLHRGTEKLIEHKTYLQAIPYFD 65
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYVS MC EHA+ +A+E LL ++P RAQ+IRV+F E+TR+LNH + IGS +LDIGA
Sbjct: 66 RLDYVSPMCQEHAFALAVESLLECEVPRRAQFIRVLFSELTRILNHTLNIGSQALDIGAT 125
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
LL+ F ERE +++ YE VSG+RMH+ Y+RPGGV DLPE
Sbjct: 126 TPLLWLFEEREKIMEFYERVSGSRMHSNYFRPGGVAADLPE------------------- 166
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
LL+ I+ F +FP + + E+LL +NR+WKQRLV IGV S + A+ GF+GPM
Sbjct: 167 ------GLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVASQKEAMDWGFSGPM 220
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
LRGSG+ WDLRK PY++Y+ ++F +PIGKNGD YDRY VR+ EM +S KIIKQCI+ +
Sbjct: 221 LRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQCIE--K 278
Query: 581 SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIY 640
KG V +++ K+T P R MK +ME +I+HFKL+TEG+ VP GE Y VE PKGEFG+Y
Sbjct: 279 MPKGAVKTDDPKLTPPTRAKMKESMEAMINHFKLYTEGYDVPAGETYKAVEAPKGEFGVY 338
Query: 641 LVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
L S G N+PYR +I++PGFAHLQ L M GH+++DV+TII T DIVFGEIDR
Sbjct: 339 LYSQGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITIIATLDIVFGEIDR 391
>gi|294011310|ref|YP_003544770.1| NADH dehydrogenase I chain D [Sphingobium japonicum UT26S]
gi|292674640|dbj|BAI96158.1| NADH dehydrogenase I chain D [Sphingobium japonicum UT26S]
Length = 411
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 229/415 (55%), Positives = 303/415 (73%), Gaps = 26/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRL++EL+GE+V + DPH+GLLHR TEKL E +TYLQ+LPY
Sbjct: 23 EIQNYTINFGPQHPAAHGVLRLVMELDGEIVERCDPHVGLLHRGTEKLIEHKTYLQALPY 82
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDY S M EH+YV+A+EKLLN+++PIRAQY+RV F E+TR+ NH++ +GSH +D+G
Sbjct: 83 FDRLDYCSPMGMEHSYVLAVEKLLNLEVPIRAQYLRVFFAELTRIKNHMLNLGSHVMDVG 142
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM L+ F RED ++ YE SGARMHAAY+RPGGV++D+P +
Sbjct: 143 AMTPNLWLFELREDCMNFYERASGARMHAAYFRPGGVHQDVPLKL--------------- 187
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L D + R P+ ++ +L+ DNRI+KQR V I VVS E AL GF+G
Sbjct: 188 ---------LTDIADWLDTRLPRLFEDAISLVADNRIFKQRNVDIAVVSKEDALKWGFSG 238
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRK QPY++Y+ + FDIP+G N D YDR++VR+EE+RQS +I+KQC+
Sbjct: 239 PMLRGSGIAWDLRKAQPYDVYDRMEFDIPVGTNFDCYDRFMVRVEEVRQSARIMKQCLAQ 298
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ +GPV+S + K+ P R MK +ME LIHHFKL+TEGF+VP GE+Y E PKGEFG
Sbjct: 299 M--PEGPVLSLDTKVAPPKRGEMKRSMEALIHHFKLYTEGFHVPAGEVYVATESPKGEFG 356
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLV+DG+NKPYR KIR F+HLQ++ M+ GHM++D ++G DIVFGE DR
Sbjct: 357 VYLVADGSNKPYRCKIRPTAFSHLQAMDFMMKGHMLADTTAVLGAMDIVFGECDR 411
>gi|322693271|gb|EFY85137.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Metarhizium acridum
CQMa 102]
Length = 470
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 235/415 (56%), Positives = 299/415 (72%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E ++YLQ+LPY
Sbjct: 83 KVRHYTVNFGPQHPAAHGVLRLILELNGEEIIRADPHVGLLHRGTEKLIEYKSYLQALPY 142
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLNI+IP RA+YIR MF EITR+LNHLM + SH++D+G
Sbjct: 143 FDRLDYVSMMTNEQCFALAVEKLLNIEIPDRAKYIRTMFGEITRILNHLMSVLSHAMDVG 202
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV++D+P
Sbjct: 203 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPV----------------- 245
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E +LTDNRIW +RL G+GVVS AL++ FTG
Sbjct: 246 --------GLLDDIYQWATQFGDRIDETEEMLTDNRIWIERLRGVGVVSAADALNLSFTG 297
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y+ + FD+P+GKNGD YDRYL R+EE RQS +II QC+
Sbjct: 298 VMLRGSGVPWDIRKSQPYDAYDKVEFDVPVGKNGDCYDRYLCRMEEFRQSLRIIHQCLNQ 357
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + KI+ P R MK NME LIHHF L+T+G+ VP GE YS +E PKGE G
Sbjct: 358 MPA--GPVRVEDYKISPPPRTAMKENMEALIHHFLLYTKGYAVPPGETYSVIEAPKGEMG 415
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDG+ +PYR IR+PGFAHL + GH+++D V +IGT D+VFGE+DR
Sbjct: 416 VYVVSDGSERPYRCHIRAPGFAHLGGFDHVSKGHLLADAVAVIGTMDLVFGEVDR 470
>gi|407775149|ref|ZP_11122445.1| NADH dehydrogenase, D subunit [Thalassospira profundimaris WP0211]
gi|407282097|gb|EKF07657.1| NADH dehydrogenase, D subunit [Thalassospira profundimaris WP0211]
Length = 392
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 239/415 (57%), Positives = 302/415 (72%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK+ +NFGPQHPAAHGVLRL+LE++GEVV ++DPHIGLLHR TEKL E +TY+Q+ PY
Sbjct: 5 KIKNMTMNFGPQHPAAHGVLRLVLEMDGEVVERSDPHIGLLHRGTEKLIEYKTYIQATPY 64
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHAY +AIEKL+ +++P RAQYIRV++ EI R+LNH++ + + +LD+G
Sbjct: 65 FDRLDYVAPMNQEHAYCLAIEKLMGVEVPKRAQYIRVLYAEIGRILNHILNLTAFALDVG 124
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM LL+ F ERE L++ YE GAR+HA Y+RPGGV DLP
Sbjct: 125 AMTPLLWGFEEREKLMEFYERACGARLHANYFRPGGVAADLP------------------ 166
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I+ + +++ + +++ +LT NRI+KQR V IG+VS E AL GFTG
Sbjct: 167 -------AGLLDDIDAWADQYEIFMKDFDRVLTGNRIFKQRTVDIGIVSAEEALDWGFTG 219
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
P +R SG+ WDLRK QPY+ Y +FDIP+GKNGD YDR+LVR EEM QS KIIKQ IK
Sbjct: 220 PNIRASGLAWDLRKSQPYDSYEEFDFDIPVGKNGDCYDRFLVRFEEMWQSLKIIKQAIKN 279
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ GPVI NNK+ P+R MK +ME LIHHFKLFTEGF+VP GE Y+ VE PKGEFG
Sbjct: 280 MPD--GPVIVENNKVAPPSRAEMKRSMEALIHHFKLFTEGFHVPAGECYATVEAPKGEFG 337
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG+N+PYR KIR+PGF HLQ + M GHM++DVV IG+ DIVFGEIDR
Sbjct: 338 VYLVSDGSNRPYRCKIRAPGFPHLQGIDFMSKGHMLADVVANIGSLDIVFGEIDR 392
>gi|330994057|ref|ZP_08317987.1| NADH-quinone oxidoreductase subunit D [Gluconacetobacter sp.
SXCC-1]
gi|329759003|gb|EGG75517.1| NADH-quinone oxidoreductase subunit D [Gluconacetobacter sp.
SXCC-1]
Length = 418
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 237/417 (56%), Positives = 301/417 (72%), Gaps = 27/417 (6%)
Query: 277 VIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSL 336
V+EI S+ LNFGPQHP+AHGVLRL+LE+EGEVV +A PH+GLLHR TEKL E +TY ++L
Sbjct: 29 VVEIDSHALNFGPQHPSAHGVLRLVLEMEGEVVARAIPHVGLLHRGTEKLIEYKTYPKAL 88
Query: 337 PYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLD 396
PY DRLDYVS MC E A+ +A+EKLL I+ P RA++IRVMF EITR+LNH++ + S LD
Sbjct: 89 PYFDRLDYVSPMCEEQAFALAVEKLLGIEAPERAKWIRVMFAEITRILNHILNLTSFGLD 148
Query: 397 IGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKA 456
GA+ L+ + ERE L++ YEA SGAR HA Y RPGGV +DLP
Sbjct: 149 CGALTPALWGYEEREKLIEFYEAASGARFHANYVRPGGVAQDLP---------------- 192
Query: 457 TKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGF 516
L D I D+ FP+ ID+ E LLT NRIWKQR VGIGV + E+AL+ GF
Sbjct: 193 ---------AGLEDRIADWARTFPQWIDDLEALLTGNRIWKQRTVGIGVFTTEQALAWGF 243
Query: 517 TGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCI 576
+GP LR SGV WDLR+ QPY+ Y+ + F++P+G+ GD YDRYL+R+ EMR+S KII QC+
Sbjct: 244 SGPCLRASGVPWDLRRSQPYDNYDKVEFNVPVGRQGDCYDRYLIRVAEMRESVKIINQCL 303
Query: 577 KWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
+ +R GPV ++KIT P R MK +ME LIHHFKLFTEG++VP G Y+ E PKGE
Sbjct: 304 EQIRP--GPVKVQDHKITPPPRREMKRSMEALIHHFKLFTEGYHVPPGATYTVTETPKGE 361
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YLV+DG+N+PYR KIR GF+HLQ++ EM HM++D V IIG+ D+VFGEIDR
Sbjct: 362 FGVYLVADGSNRPYRCKIRPTGFSHLQAIDEMSRRHMLADAVAIIGSLDLVFGEIDR 418
>gi|395787838|ref|ZP_10467430.1| NADH-quinone oxidoreductase subunit D [Bartonella birtlesii LL-WM9]
gi|395410460|gb|EJF77015.1| NADH-quinone oxidoreductase subunit D [Bartonella birtlesii LL-WM9]
Length = 396
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 233/418 (55%), Positives = 309/418 (73%), Gaps = 27/418 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
+ ++++ +NFGPQHPAAHGVLR++LEL+GEVV++ DPHIGLLHR TEKL E +TYLQ++P
Sbjct: 4 VSVRNFNINFGPQHPAAHGVLRMVLELDGEVVKRVDPHIGLLHRGTEKLMETKTYLQAVP 63
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y+DRLDYV+ M EHA+V+AIEKLL ++IP R Q IRV+F EI R+LNHL+ + + ++D+
Sbjct: 64 YLDRLDYVAPMNQEHAFVLAIEKLLGVEIPKRGQLIRVLFSEIGRILNHLLNVTTQAMDV 123
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GA+ L+ F +RE L+ YE GAR+HA Y+RPGGV++DLPE
Sbjct: 124 GALTPPLWGFEQREKLMIFYERACGARLHANYFRPGGVHQDLPE---------------- 167
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
SL++ I +F + F + + + L+T NRI+KQR V IGVVS + A + GF+
Sbjct: 168 ---------SLIEDIGNFIDPFLIALGKLDALITPNRIFKQRNVDIGVVSIDEAWARGFS 218
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
G M+RG+GV WDLRK QPYE YN + FDIP+GKN D YDRYL+R+EEMRQS +I++QC+
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYNEMEFDIPVGKNSDCYDRYLIRMEEMRQSARIMRQCVD 278
Query: 578 WLRSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
L S + GPV S ++KI P R MKS+ME LIHHFKL+TEGF+ P GE+Y VE PKG
Sbjct: 279 RLLSTEKNGPVSSLDHKIVPPKRSEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFG+YLVSDG NKPYR+K+R+PGFAHLQ++ + GHM++D I+G+ DIVFGEIDR
Sbjct: 339 EFGVYLVSDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAILGSIDIVFGEIDR 396
>gi|302854328|ref|XP_002958673.1| NADH:ubiquinone oxidoreductase 49 kDa subunit [Volvox carteri f.
nagariensis]
gi|300255998|gb|EFJ40276.1| NADH:ubiquinone oxidoreductase 49 kDa subunit [Volvox carteri f.
nagariensis]
Length = 469
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 234/415 (56%), Positives = 299/415 (72%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++ ++ LNFGPQHPAAHGVLRL+LE+ GE++ +ADPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 82 KVNNFTLNFGPQHPAAHGVLRLVLEMNGEIITRADPHIGLLHRGTEKLIEYKTYLQALPY 141
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMMC EH+YV+AIE+LLN+ +P+R QYIRV++ EITR+LNHL+ I H++D+G
Sbjct: 142 FDRLDYVSMMCMEHSYVLAIEQLLNLAVPLRGQYIRVLYSEITRVLNHLLAITCHAMDVG 201
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+AF ERE L + YE VSGARMHAAY+R GGV +DLP
Sbjct: 202 ALTPFLWAFEEREKLFEFYERVSGARMHAAYFRVGGVSQDLPI----------------- 244
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LL I D+ +F +DE E LLT NRIWK+R V +G ++ + A G +G
Sbjct: 245 --------GLLRDIYDWARQFSSRLDEIEELLTGNRIWKERTVDVGTITAQMAWDWGCSG 296
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
P+LR SG+ WDLRK QPY+ Y + F++PI +GD YDRYLVR++EMR+S +II QC+
Sbjct: 297 PILRASGIDWDLRKTQPYDAYGRMQFNVPIAGHGDCYDRYLVRLQEMRESLRIIYQCLNE 356
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ G S + K+ P+R MK +ME LIHHFKL+TEGF+VP GE Y VE PKGEFG
Sbjct: 357 M--PDGLYKSPDAKVCPPSRSTMKQSMEALIHHFKLYTEGFHVPAGETYRAVEAPKGEFG 414
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVS G N+PYR KIRSPG+AHLQ + + G M++DVVTIIGT D+VFGEIDR
Sbjct: 415 VYLVSRGGNRPYRCKIRSPGYAHLQMMDVISKGAMLADVVTIIGTMDVVFGEIDR 469
>gi|330921705|ref|XP_003299535.1| hypothetical protein PTT_10543 [Pyrenophora teres f. teres 0-1]
gi|311326760|gb|EFQ92374.1| hypothetical protein PTT_10543 [Pyrenophora teres f. teres 0-1]
Length = 475
Score = 490 bits (1262), Expect = e-135, Method: Compositional matrix adjust.
Identities = 237/415 (57%), Positives = 296/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E RTYLQ+LPY
Sbjct: 88 KIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYRTYLQALPY 147
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLNI IPIRA+YIR +F EITR+LNHLM + SH++D+G
Sbjct: 148 FDRLDYVSMMTNEQCFSLAVEKLLNIDIPIRAKYIRTLFGEITRILNHLMSVLSHAMDVG 207
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV +DLP
Sbjct: 208 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDLPI----------------- 250
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E +LTDNRIW R G+GVVS A++ F+G
Sbjct: 251 --------GLLDDIYQWATQFGDRIDETEEMLTDNRIWIGRTKGVGVVSAADAINYSFSG 302
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y+ + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 303 VMLRGSGVPWDIRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNQ 362
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + KI P R MK NME LIHHF LF++G+ VP GE YS +E PKGE G
Sbjct: 363 MPA--GPVKVEDYKIAPPPRAAMKENMEALIHHFLLFSKGYTVPPGETYSAIEAPKGEMG 420
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++LVSDG+ +PYR KIR+PGFAHL + ++ GH+++D V IIGT D+VFGE+DR
Sbjct: 421 VFLVSDGSERPYRCKIRAPGFAHLACMDQISRGHLLADAVAIIGTMDLVFGEVDR 475
>gi|310800370|gb|EFQ35263.1| NADH dehydrogenase [Glomerella graminicola M1.001]
Length = 473
Score = 490 bits (1261), Expect = e-135, Method: Compositional matrix adjust.
Identities = 235/415 (56%), Positives = 298/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E +TYLQ+LPY
Sbjct: 86 KIRHYTVNFGPQHPAAHGVLRLILELNGEEIIRADPHVGLLHRGTEKLCEYKTYLQALPY 145
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLNI+IP RA++IR +F EITR+LNHLM + SH++D+G
Sbjct: 146 FDRLDYVSMMTNEQCFALAVEKLLNIEIPDRAKWIRTLFGEITRILNHLMSVLSHAMDVG 205
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV++D+P
Sbjct: 206 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPV----------------- 248
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E +LTDNRIW QRL GIGVVS AL++ FTG
Sbjct: 249 --------GLLDDIYQWATQFGDRIDETEEMLTDNRIWIQRLQGIGVVSAAEALNLSFTG 300
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y+ + FD+P+G GD YDRYL R+EE RQS +II QC+
Sbjct: 301 VMLRGSGVPWDIRKSQPYDAYDQVEFDVPVGVRGDCYDRYLCRMEEFRQSLRIIHQCLNK 360
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + KI+ P R MK NME LIHHF L+T+G+ VP GE YS +E PKGE G
Sbjct: 361 MPA--GPVRVEDYKISPPPRAAMKENMEALIHHFLLYTKGYAVPPGETYSAIEAPKGEMG 418
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+++VSDG+ +PYR+ IR+PGFAHL + GHM++D V +IGT D+VFGE+DR
Sbjct: 419 VFVVSDGSERPYRVHIRAPGFAHLGGFDHVSKGHMLADAVAVIGTMDLVFGEVDR 473
>gi|380488326|emb|CCF37452.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Colletotrichum
higginsianum]
Length = 473
Score = 490 bits (1261), Expect = e-135, Method: Compositional matrix adjust.
Identities = 233/415 (56%), Positives = 298/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E +TYLQ+LPY
Sbjct: 86 KIRHYTVNFGPQHPAAHGVLRLILELNGEEIIRADPHVGLLHRGTEKLCEYKTYLQALPY 145
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLN++IP RA++IR +F EITR+LNHLM + SH++D+G
Sbjct: 146 FDRLDYVSMMTNEQCFALAVEKLLNVEIPERAKWIRTLFGEITRILNHLMSVLSHAMDVG 205
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV++D+P
Sbjct: 206 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPV----------------- 248
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E +LTDNRIW QRL G+GVVS AL++ FTG
Sbjct: 249 --------GLLDDIYQWATQFGDRIDETEEMLTDNRIWIQRLQGVGVVSAAEALNLSFTG 300
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y+ + FD+P+G GD YDRYL R+EE RQS +II QC+
Sbjct: 301 VMLRGSGVPWDIRKSQPYDAYDQVEFDVPVGVRGDCYDRYLCRMEEFRQSLRIIHQCLNK 360
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + KI+ P R MK NME LIHHF L+T+G+ VP GE YS +E PKGE G
Sbjct: 361 MPA--GPVRVEDYKISPPPRAAMKENMEALIHHFLLYTKGYTVPPGETYSAIEAPKGEMG 418
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+++VSDG+ +PYR+ IR+PGFAHL + GHM++D V +IGT D+VFGE+DR
Sbjct: 419 VFVVSDGSERPYRVHIRAPGFAHLAGFDHVSKGHMLADAVAVIGTMDLVFGEVDR 473
>gi|452001562|gb|EMD94021.1| hypothetical protein COCHEDRAFT_1222624 [Cochliobolus
heterostrophus C5]
Length = 474
Score = 490 bits (1261), Expect = e-135, Method: Compositional matrix adjust.
Identities = 237/415 (57%), Positives = 295/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E RTYLQ+LPY
Sbjct: 87 KIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYRTYLQALPY 146
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE Y +A+EKLLNI IPIRA+YIR MF EITR+LNHLM + SH++D+G
Sbjct: 147 FDRLDYVSMMTNEQCYSLAVEKLLNIDIPIRAKYIRTMFAEITRILNHLMSVLSHAMDVG 206
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV +D+P
Sbjct: 207 ALTPFLWGFEEREKLMEFYERVSGARLHAAYIRPGGVSQDIPL----------------- 249
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E +LTDNRIW R G+GVV A++ F+G
Sbjct: 250 --------GLLDDIYQWATQFGDRIDETEEMLTDNRIWIGRTKGVGVVPAADAINYSFSG 301
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y+ + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 302 VMLRGSGVPWDVRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNQ 361
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + KI P R MK NME LIHHF LF++G+ VP GE YS +E PKGE G
Sbjct: 362 MPA--GPVKVEDYKIAPPPRAAMKENMEALIHHFLLFSKGYTVPPGETYSAIEAPKGEMG 419
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++LVSDG+ +PYR KIR+PGFAHL + ++ GH+++D V IIGT D+VFGE+DR
Sbjct: 420 VFLVSDGSERPYRCKIRAPGFAHLACMDQISRGHLLADAVAIIGTMDLVFGEVDR 474
>gi|338974264|ref|ZP_08629626.1| NADH-ubiquinone oxidoreductase chain D [Bradyrhizobiaceae bacterium
SG-6C]
gi|338232991|gb|EGP08119.1| NADH-ubiquinone oxidoreductase chain D [Bradyrhizobiaceae bacterium
SG-6C]
Length = 402
Score = 490 bits (1261), Expect = e-135, Method: Compositional matrix adjust.
Identities = 233/416 (56%), Positives = 312/416 (75%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL EQ+TYLQ++PY
Sbjct: 12 MRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEQKTYLQAIPYF 71
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +A EKLL I++P R Q IRV++ EI R+L+HL+ + + ++D+GA
Sbjct: 72 DRLDYVAPMNQEHAFCLAAEKLLGIQVPRRGQLIRVLYCEIGRILSHLLNVTTQAMDVGA 131
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHAA++R GGV++DLP
Sbjct: 132 LTPPLWGFEEREKLMVFYERASGSRMHAAFFRVGGVHQDLPP------------------ 173
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
+L++ I+ + + F K +D+ ETLLTDNRI+KQR V IGVV+ E+A GF+G
Sbjct: 174 -------ALINDIDAWCDPFLKVVDDLETLLTDNRIFKQRNVDIGVVTLEQAWEWGFSGV 226
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLRK QPYE Y+ ++FDIPIGKNGD YDRY +R+EEMRQS +I+KQCI+ L
Sbjct: 227 MVRGSGAAWDLRKSQPYECYDEMDFDIPIGKNGDCYDRYCIRMEEMRQSVRIMKQCIEKL 286
Query: 580 RS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
R+ +GPV+ ++NKI P R MK +ME LIHHFKL+TEG +VP GE+Y+ VE PKGEF
Sbjct: 287 RAPEGQGPVVVDDNKIAPPRRSEMKRSMEALIHHFKLYTEGVHVPAGEVYAAVEAPKGEF 346
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G++LV+DG NKPY+ KIR+PGFAHLQ++ + GH+++DV I+G+ DIVFGE+DR
Sbjct: 347 GVFLVADGTNKPYKCKIRAPGFAHLQAMDFICRGHLLADVSAILGSLDIVFGEVDR 402
>gi|451849745|gb|EMD63048.1| hypothetical protein COCSADRAFT_182335 [Cochliobolus sativus
ND90Pr]
Length = 474
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 237/415 (57%), Positives = 295/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E RTYLQ+LPY
Sbjct: 87 KIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYRTYLQALPY 146
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE Y +A+EKLLNI IPIRA+YIR MF EITR+LNHLM + SH++D+G
Sbjct: 147 FDRLDYVSMMTNEQCYSLAVEKLLNIDIPIRAKYIRTMFGEITRILNHLMSVLSHAMDVG 206
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV +D+P
Sbjct: 207 ALTPFLWGFEEREKLMEFYERVSGARLHAAYIRPGGVSQDIPL----------------- 249
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E +LTDNRIW R GIGVV A++ F+G
Sbjct: 250 --------GLLDDIYQWATQFGDRIDETEEMLTDNRIWIGRTKGIGVVPAADAINYSFSG 301
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y+ + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 302 VMLRGSGVPWDIRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNQ 361
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GP+ + KI P R MK NME LIHHF LF++G+ VP GE YS +E PKGE G
Sbjct: 362 MPA--GPIKVEDYKIAPPPRAAMKENMEALIHHFLLFSKGYTVPPGETYSAIEAPKGEMG 419
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++LVSDG+ +PYR KIR+PGFAHL + ++ GH+++D V IIGT D+VFGE+DR
Sbjct: 420 VFLVSDGSERPYRCKIRAPGFAHLACMDQISRGHLLADAVAIIGTMDLVFGEVDR 474
>gi|85708751|ref|ZP_01039817.1| NADH dehydrogenase delta subunit [Erythrobacter sp. NAP1]
gi|85690285|gb|EAQ30288.1| NADH dehydrogenase delta subunit [Erythrobacter sp. NAP1]
Length = 403
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 226/414 (54%), Positives = 305/414 (73%), Gaps = 26/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
I +Y LNFGPQHPAAHGVLR+++EL+GEV+ + DPH+GLLHR TEKL EQ+TYLQ+LPY
Sbjct: 16 ITNYTLNFGPQHPAAHGVLRMVMELDGEVIERVDPHVGLLHRGTEKLIEQKTYLQALPYF 75
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDY S +C EH+YV+AIEKLLNI++P RAQY+RV+F E+TR+ NH++ IG+H +D+GA
Sbjct: 76 DRLDYCSPLCQEHSYVLAIEKLLNIEVPERAQYLRVLFAELTRICNHMLNIGAHVMDVGA 135
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M L+ F RED L+ +E SGARMH+A++RPGGV++D+PE +
Sbjct: 136 MTPNLWVFELREDCLNFFERASGARMHSAWFRPGGVHQDVPEKL---------------- 179
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D + NRF + D+ +L+ DNRI+KQR V I VVS + A++ GF+GP
Sbjct: 180 --------LVDIGDWLDNRFFQLFDDAMSLVMDNRIFKQRNVDIAVVSRDDAVAWGFSGP 231
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+R +G+ WDLRK QPY++Y+ + FDIP+G N D YDR++VR++E+R+S KIIKQC++ +
Sbjct: 232 MIRAAGIPWDLRKSQPYDVYDRMEFDIPVGTNSDCYDRFMVRVQEVRESAKIIKQCLRDM 291
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+GP+ S + K++ P R MK +ME LIHHFKL+TEGF+VP GE+Y E PKGEFG+
Sbjct: 292 --PEGPIASTDGKVSPPKRGEMKQSMESLIHHFKLYTEGFHVPAGEVYVATESPKGEFGV 349
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG NKPYR KIR F+HLQ++ M GHM++D I+G D+VFGE DR
Sbjct: 350 YLVSDGTNKPYRCKIRPTAFSHLQAMDMMSKGHMLADATAILGAIDVVFGECDR 403
>gi|226287321|gb|EEH42834.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Paracoccidioides
brasiliensis Pb18]
Length = 479
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 237/415 (57%), Positives = 298/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E +TY+Q+LPY
Sbjct: 92 KIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYMQALPY 151
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLNI+IP RA++IR MF EITR+LNHLM + SH++D+G
Sbjct: 152 FDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKWIRTMFGEITRILNHLMSVLSHAMDVG 211
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV++D+P
Sbjct: 212 ALTPFLWGFEEREKLMEFYERVSGARLHAAYIRPGGVHQDIPL----------------- 254
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E LLT+NRIWK R GIGVVS AL+ F+G
Sbjct: 255 --------GLLDDIYQWATQFGDRIDETEELLTENRIWKARTQGIGVVSAAEALNYSFSG 306
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y+ + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 307 VMLRGSGVPWDVRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNK 366
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + KI+ P R MK NME LIHHF LFT+G+ VP GE YS +E PKGE G
Sbjct: 367 MPA--GPVRVEDYKISPPPRAAMKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMG 424
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++LVSDG+ +PYR KIR+PGFAHL ++ GH+++D V IIGT D+VFGE+DR
Sbjct: 425 VFLVSDGSERPYRCKIRAPGFAHLSCFDQISRGHLLADAVAIIGTMDLVFGEVDR 479
>gi|254476027|ref|ZP_05089413.1| NADH dehydrogenase (quinone), D subunit [Ruegeria sp. R11]
gi|214030270|gb|EEB71105.1| NADH dehydrogenase (quinone), D subunit [Ruegeria sp. R11]
Length = 403
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 233/415 (56%), Positives = 306/415 (73%), Gaps = 26/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 15 KIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNLPY 74
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +AIEKL +++P RA IRV++ EI R+LNHL+ + + ++D+G
Sbjct: 75 FDRLDYVAPMNQEHAWCLAIEKLTGVEVPRRASLIRVLYSEIGRILNHLLNVTTQAMDVG 134
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE GAR+HAAY+RPGGV++DLP+
Sbjct: 135 ALTPPLWGFEEREKLMIFYERACGARLHAAYFRPGGVHQDLPD----------------- 177
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+L+D IE +T FP +D+ + LLT+NRI+KQR IGVV+ E L+ GF+G
Sbjct: 178 --------ALIDDIEAWTYTFPAVMDDIDGLLTENRIFKQRNADIGVVTEEDILNYGFSG 229
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG+ WDLR+ QPYE Y+ +F IP+GKNGD YDRYLVR+EEMRQS II+QCI
Sbjct: 230 VMVRGSGLAWDLRRSQPYECYDEFDFQIPVGKNGDCYDRYLVRMEEMRQSLSIIRQCIGK 289
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR G V++ K+T P R +MK++ME LIHHFKL+TEGF+VP GE+Y+ VE PKGEFG
Sbjct: 290 LRETPGDVLA-RGKLTPPKRGDMKTSMESLIHHFKLYTEGFHVPAGEVYAAVEAPKGEFG 348
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLV+DG NKPYR K+R+PG+ HLQ++ + GH ++DV IIGT D+VFGEIDR
Sbjct: 349 VYLVADGTNKPYRAKLRAPGYLHLQAMDYVAKGHQLADVAAIIGTMDVVFGEIDR 403
>gi|383849689|ref|XP_003700477.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial-like [Megachile rotundata]
Length = 471
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 242/414 (58%), Positives = 298/414 (71%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
IK+ NFGPQHPAAHGVLRLILE++GE V +ADPHIGLLHR TEKL E +TY+Q+LPY
Sbjct: 85 IKNVSFNFGPQHPAAHGVLRLILEMDGEKVIRADPHIGLLHRGTEKLIEYKTYMQALPYF 144
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE + +AIEKLLNI +P+RA+YIR MF E+TR+LNH+M +G+H+LDIGA
Sbjct: 145 DRLDYVSMMCNEQCFSLAIEKLLNIDVPLRAKYIRTMFAELTRILNHIMGVGTHALDIGA 204
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ + F ERE L++ YE VSGARMHAAY RPGGV DLP
Sbjct: 205 ITPFFWLFEEREKLMEFYERVSGARMHAAYIRPGGVSLDLPL------------------ 246
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I D+ ++ + +DE E LLT NRIW R IG VS E AL+ G +G
Sbjct: 247 -------GLMDDIYDWCTKYGERLDEVEDLLTGNRIWVGRTQNIGTVSAEDALNWGCSGV 299
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG+KWDLRK PY+ Y+L+ FD+PIG NGD YDRYL R+EEMRQS +II QC+ +
Sbjct: 300 MLRGSGIKWDLRKAMPYDAYDLVEFDVPIGVNGDCYDRYLCRVEEMRQSLRIIYQCLNQM 359
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G V ++ KI P R MK++ME LIHHFKL+T+GF VP G Y+ +E PKGEFG+
Sbjct: 360 PA--GEVRIDDAKIVPPRREEMKTSMEALIHHFKLYTQGFQVPPGSTYTAIEAPKGEFGV 417
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG +KPYR KI++PGFAHL +L M M++DVV IIGT D+VFGEIDR
Sbjct: 418 YLVSDGTSKPYRCKIKAPGFAHLAALRHMGPSCMLADVVAIIGTLDVVFGEIDR 471
>gi|379713996|ref|YP_005302334.1| NADH dehydrogenase subunit D [Rickettsia massiliae str. AZT80]
gi|376334642|gb|AFB31874.1| NADH dehydrogenase subunit D [Rickettsia massiliae str. AZT80]
Length = 391
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 235/413 (56%), Positives = 298/413 (72%), Gaps = 27/413 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
K+ LN GPQHPA HGVLRLILE++GEVV A PHIGLLHR TEKL E +TYLQ++ Y D
Sbjct: 6 KTITLNLGPQHPATHGVLRLILEMDGEVVNNAVPHIGLLHRGTEKLIEHKTYLQAISYFD 65
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYVS MC EHA+ +A+E LL ++P RAQ+IRV+F E+TR+LNH + IGS +LDIGA
Sbjct: 66 RLDYVSPMCQEHAFALAVESLLECEVPRRAQFIRVLFSELTRILNHTLNIGSQALDIGAT 125
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
LL+ F ERE +++ YE VSG+RMH+ Y+RPGGV DLPE
Sbjct: 126 TPLLWLFEEREKIMEFYEHVSGSRMHSNYFRPGGVAADLPE------------------- 166
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
LL+ I+ F +FP + + E+LL +NR+WKQRLV IGV S + A+ GF+GPM
Sbjct: 167 ------GLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVASQKEAMDWGFSGPM 220
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
LRGSG+ WDLRK PY++Y+ ++F +PIGKNGD YDRY VR+ EM +S KIIKQCI+ +
Sbjct: 221 LRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQCIE--K 278
Query: 581 SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIY 640
KG V +++ K+T P R MK +ME +IHHFKL+TEG+ VP GE Y VE PKGEFG+Y
Sbjct: 279 MPKGAVKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGEFGVY 338
Query: 641 LVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
L S G N+PYR +I++PGFAHLQ L M GH+++DV+TII T DIVFGEIDR
Sbjct: 339 LYSQGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITIIATLDIVFGEIDR 391
>gi|402222758|gb|EJU02824.1| NADH dehydrogenase I D subunit [Dacryopinax sp. DJM-731 SS1]
Length = 449
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 233/414 (56%), Positives = 299/414 (72%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+K + +NFGPQHPAAHGVLRLILEL GE + +ADPHIGLLHRATEKL E +TY Q+ PY
Sbjct: 63 LKHFTVNFGPQHPAAHGVLRLILELNGEQILRADPHIGLLHRATEKLIEYKTYTQAAPYF 122
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMM NE + +A+EKLLNI +PIRA++IR +F EITR+LNHLM + +H++D+GA
Sbjct: 123 DRLDYVSMMTNEQCFALAVEKLLNIDVPIRAKWIRTLFGEITRILNHLMAVLTHAMDVGA 182
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L++ YE VSGARMHA Y RPGGV DLP
Sbjct: 183 LTPFLWGFEEREKLMEFYERVSGARMHANYVRPGGVSFDLP------------------- 223
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LL+ I + +F +DE+E +LT NRIWK R +GIG V+ + AL F+G
Sbjct: 224 ------NGLLEDIFKWATQFSSRVDEFEEVLTANRIWKVRTIGIGPVTAQEALDYSFSGV 277
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG+ WDLRK QPYE Y+ + FD+P+GKNGDSYDRYL R++EMR+S +I+ QC+ +
Sbjct: 278 MLRGSGIAWDLRKVQPYECYDQVEFDVPVGKNGDSYDRYLCRVQEMRESLRIVGQCLNKM 337
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + +++KI++P R MK +ME LIHHFKLF+EG+ VP GE YS +E PKGE +
Sbjct: 338 PT--GVIKVDDHKISNPPRAMMKESMESLIHHFKLFSEGYSVPPGETYSAIEAPKGEMAV 395
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+N+PYR KIR+PGFAHL M+ GH ++D VTIIGT D+VFGE+DR
Sbjct: 396 YLVSDGSNRPYRCKIRAPGFAHLAGADFMMRGHNLADAVTIIGTMDLVFGEVDR 449
>gi|395784247|ref|ZP_10464086.1| NADH-quinone oxidoreductase subunit D [Bartonella melophagi K-2C]
gi|395424002|gb|EJF90190.1| NADH-quinone oxidoreductase subunit D [Bartonella melophagi K-2C]
Length = 396
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 234/418 (55%), Positives = 307/418 (73%), Gaps = 27/418 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
+ ++++ +NFGPQHPAAHGVLR++LEL+GEVV + DPHIGLLHR TEKL E +TYLQ+ P
Sbjct: 4 VNVRNFNINFGPQHPAAHGVLRMVLELDGEVVERVDPHIGLLHRGTEKLMETKTYLQACP 63
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y+DRLDYV+ M EHA+V+AIEKLL I++P R Q IRV+F EI R+LNHL+ + + ++D+
Sbjct: 64 YLDRLDYVAPMNQEHAFVLAIEKLLGIEVPKRGQLIRVLFSEIGRILNHLLNVTTQAMDV 123
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GA+ L+ F +RE L+ YE GAR+HA Y+RPGGV++DLPE
Sbjct: 124 GALTPPLWGFEQRERLMIFYERACGARLHANYFRPGGVHKDLPE---------------- 167
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
SL++ I +F + F +D+ + L+T NRI+KQR V IGVVS + A S GF+
Sbjct: 168 ---------SLIEDIGNFIDPFLVALDKLDALITPNRIFKQRNVDIGVVSSDEAWSRGFS 218
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
G M+RG+GV WDLRK QPYE Y+ + FDIP+GKN D YDRYL+R+EEMRQS KII QC+
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYDEMEFDIPVGKNSDCYDRYLIRMEEMRQSAKIICQCVN 278
Query: 578 WLRSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
L S + GPV + N+KI P R MK++ME LIHHFKL+TEGF+ P GE+Y VE PKG
Sbjct: 279 RLLSTERNGPVSNLNHKIVPPKRNEMKNSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFG+YLVSDG NKPYR+K+R+PGFAHLQ++ + GHM++D I+G+ DIVFGE+DR
Sbjct: 339 EFGVYLVSDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAILGSIDIVFGEVDR 396
>gi|295663795|ref|XP_002792450.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Paracoccidioides sp.
'lutzii' Pb01]
gi|226279120|gb|EEH34686.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Paracoccidioides sp.
'lutzii' Pb01]
Length = 479
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 237/415 (57%), Positives = 298/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E +TY+Q+LPY
Sbjct: 92 KIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYMQALPY 151
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLNI+IP RA++IR MF EITR+LNHLM + SH++D+G
Sbjct: 152 FDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKWIRTMFAEITRILNHLMSVLSHAMDVG 211
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV++D+P
Sbjct: 212 ALTPFLWGFEEREKLMEFYERVSGARLHAAYIRPGGVHQDIPL----------------- 254
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E LLT+NRIWK R GIGVVS AL+ F+G
Sbjct: 255 --------GLLDDIYQWATQFGDRIDETEELLTENRIWKARTQGIGVVSAAEALNYSFSG 306
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y+ + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 307 VMLRGSGVPWDVRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNK 366
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + KI+ P R MK NME LIHHF LFT+G+ VP GE YS +E PKGE G
Sbjct: 367 MPA--GPVRVEDYKISPPPRAAMKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMG 424
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++LVSDG+ +PYR KIR+PGFAHL ++ GH+++D V IIGT D+VFGE+DR
Sbjct: 425 VFLVSDGSERPYRCKIRAPGFAHLSCFDQISRGHLLADAVAIIGTMDLVFGEVDR 479
>gi|367019636|ref|XP_003659103.1| hypothetical protein MYCTH_2295737 [Myceliophthora thermophila ATCC
42464]
gi|347006370|gb|AEO53858.1| hypothetical protein MYCTH_2295737 [Myceliophthora thermophila ATCC
42464]
Length = 489
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 233/415 (56%), Positives = 299/415 (72%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E +TYLQ+LPY
Sbjct: 102 KVRHYTVNFGPQHPAAHGVLRLILELNGEEIIRADPHVGLLHRGTEKLCEYKTYLQALPY 161
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLNI+IP RA++IR MF EITR+LNHLM + SH++D+G
Sbjct: 162 FDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKFIRTMFAEITRILNHLMSVLSHAMDVG 221
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV++D+P
Sbjct: 222 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPV----------------- 264
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E +LTDNRIW +RL G+GVVS AL++ FTG
Sbjct: 265 --------GLLDDIYQWATQFGDRIDETEEMLTDNRIWIERLKGVGVVSAADALNLSFTG 316
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y+ + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 317 VMLRGSGVPWDIRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNK 376
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + KI+ P R MK NME LIHHF L+T+G+ VP G+ YS +E PKGE G
Sbjct: 377 MPA--GPVRVEDYKISPPPRAAMKENMEALIHHFLLYTKGYAVPPGDTYSAIEAPKGEMG 434
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDG+ +PYR+ IR+PGFAHL + GH+++D V +IGT D+VFGE+DR
Sbjct: 435 VYVVSDGSERPYRVHIRAPGFAHLGGFDHISRGHLLADAVAVIGTMDLVFGEVDR 489
>gi|315499791|ref|YP_004088594.1| NADH dehydrogenase i, d subunit [Asticcacaulis excentricus CB 48]
gi|315417803|gb|ADU14443.1| NADH dehydrogenase I, D subunit [Asticcacaulis excentricus CB 48]
Length = 419
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 232/413 (56%), Positives = 306/413 (74%), Gaps = 25/413 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
+ + +NFGPQHPAAHGVLRL+L+L+GE+V + DPHIGLLHR TEKL E RTYLQ+ PY D
Sbjct: 32 RKFTINFGPQHPAAHGVLRLVLDLDGEIVERVDPHIGLLHRGTEKLMEYRTYLQNTPYFD 91
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYV+ M EHA+ +AIE+LL +++P RAQ IRV+F EI R+L+HL+ I + ++D+GA+
Sbjct: 92 RLDYVAPMNQEHAFCLAIERLLGLEVPKRAQLIRVLFSEIGRILSHLLNITTQAMDVGAL 151
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
L+ F ERE L+ YE GAR+HA Y+RPGGV++DL
Sbjct: 152 TPPLWGFEEREKLMVFYERACGARLHANYFRPGGVHQDL--------------------- 190
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
L+D IE + FP+ + + E+L+T+NRI+KQR V IGVVS + A GFTG M
Sbjct: 191 ----TTELIDDIEQWCKEFPRALADIESLVTENRIFKQRNVDIGVVSKQEAYDWGFTGVM 246
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
+RGSG++WDLRK QPYE Y+ L+FDI IGKNGD +DRYL R+EEMRQ+ KI++QC++ LR
Sbjct: 247 IRGSGIEWDLRKSQPYECYDELDFDIVIGKNGDCWDRYLCRVEEMRQAVKIMEQCVEKLR 306
Query: 581 SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIY 640
G V++ ++KIT P R +MK++ME LIHHFKL+TEGF P GE+Y+ VE PKGEFG+Y
Sbjct: 307 VTGGEVLATDHKITPPRRADMKNSMEALIHHFKLYTEGFKTPPGEVYAAVEAPKGEFGVY 366
Query: 641 LVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
LVSDG+NKPYR KIR+PGFAHLQ++ M GH+++DV I+G+ DIVFGE+DR
Sbjct: 367 LVSDGSNKPYRCKIRAPGFAHLQAMDWMNRGHLLADVSAILGSLDIVFGEVDR 419
>gi|414162404|ref|ZP_11418651.1| NADH-quinone oxidoreductase subunit D [Afipia felis ATCC 53690]
gi|410880184|gb|EKS28024.1| NADH-quinone oxidoreductase subunit D [Afipia felis ATCC 53690]
Length = 405
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 235/415 (56%), Positives = 306/415 (73%), Gaps = 27/415 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
+++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL EQ+TYLQ++PY D
Sbjct: 16 RNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEQKTYLQAIPYFD 75
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYV+ M EHA+ +A EKLL I +P R Q IRV++ EI R+L+HL+ + + ++D+GA+
Sbjct: 76 RLDYVAPMNQEHAFCLAAEKLLGITVPRRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 135
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
L+ F ERE L+ YE SG+RMHAA++R GGV++DLP
Sbjct: 136 TPPLWGFEEREKLMMFYERASGSRMHAAFFRIGGVHQDLPP------------------- 176
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
L+D I+ + + F + +D+ ETLLTDNRI+KQR V IGVV+ ++A GF+G M
Sbjct: 177 ------KLIDDIDAWCDPFLQVVDDLETLLTDNRIFKQRNVDIGVVTLDQAWEWGFSGVM 230
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
+RGSG WDLRK QPYE Y+ + FDIPIGKNGD YDRY +R+EEMRQS +I+KQCI LR
Sbjct: 231 VRGSGAAWDLRKAQPYECYDEMEFDIPIGKNGDCYDRYCIRVEEMRQSVRIMKQCIAKLR 290
Query: 581 S--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
S +GPV+ +NKIT P R MK +ME LIHHFKL+TEG VP GE+Y+ VE PKGEFG
Sbjct: 291 SPDGQGPVVIEDNKITPPRRGEMKRSMEALIHHFKLYTEGVRVPAGEVYAAVEAPKGEFG 350
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLV+DG NKPY+ KIR+PGFAHLQ++ + GH+++DV I+G+ DIVFGE+DR
Sbjct: 351 VYLVADGTNKPYKCKIRAPGFAHLQAMDFICKGHLLADVSAILGSLDIVFGEVDR 405
>gi|110816059|ref|YP_684391.1| NADH dehydrogenase subunit 7 [Oltmannsiellopsis viridis]
gi|86450270|gb|ABC96349.1| NADH dehydrogenase subunit 7 (mitochondrion) [Oltmannsiellopsis
viridis]
Length = 398
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 231/415 (55%), Positives = 299/415 (72%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++K++ LN GPQHP+AHGVLRL+LEL GEV+ +ADPHIGLLHR EKL E +T++Q+LPY
Sbjct: 11 QVKNFTLNLGPQHPSAHGVLRLVLELNGEVIERADPHIGLLHRGCEKLIEYKTFVQALPY 70
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM EH+Y +AIEKL++ ++P+RAQYIRV+F EITR+LNHL+ + H+LD+G
Sbjct: 71 FDRLDYVSMMAQEHSYCLAIEKLVDCELPLRAQYIRVLFSEITRILNHLLALSCHALDVG 130
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+AF ERE LL+ YE SGARMHAAY+RPGGV +DLP
Sbjct: 131 ALTPFLWAFEEREKLLEFYERASGARMHAAYFRPGGVAQDLP------------------ 172
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L D I F +F +DE E +LT+NRIWKQRLV IG V+ + AL GF+G
Sbjct: 173 -------AGLCDDIHQFAKQFASRLDEIEEMLTNNRIWKQRLVDIGTVTAKEALDWGFSG 225
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
++RGSG+ WDLR QPYE+Y+ + F +P+G GD YDRYL+R+EEMRQS +II Q +
Sbjct: 226 VLVRGSGIPWDLRTAQPYEVYDRMKFSVPVGIRGDCYDRYLIRVEEMRQSLQIIMQALNQ 285
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + G V ++ K+T P+R +K +ME LIHHFKL+TEGF VP E Y+ VE PKGEFG
Sbjct: 286 MPN--GCVKVDDKKLTPPSRSQLKQSMESLIHHFKLYTEGFNVPASETYAAVEAPKGEFG 343
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++LVS+G NKPYR KIR+P + LQ L M H+++DVVTIIGT D+VFG IDR
Sbjct: 344 VFLVSNGTNKPYRCKIRAPDYNSLQGLDFMARKHLLADVVTIIGTLDVVFGSIDR 398
>gi|336263010|ref|XP_003346287.1| hypothetical protein SMAC_05824 [Sordaria macrospora k-hell]
gi|380093616|emb|CCC08580.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 478
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 235/415 (56%), Positives = 298/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++ Y +NFGPQHPAAHGVLRLILEL+GE + +ADPH+GLLHR TEKL E RTYLQ+LPY
Sbjct: 91 KVRHYTVNFGPQHPAAHGVLRLILELKGEEIVRADPHVGLLHRGTEKLCEYRTYLQALPY 150
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLN++IP RA++IR +F EITR+LNHLM + SH++D+G
Sbjct: 151 FDRLDYVSMMTNEQCFALAVEKLLNVEIPERAKWIRTLFAEITRILNHLMSVLSHAMDVG 210
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV++DLP
Sbjct: 211 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDLPL----------------- 253
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E +LTDNRIW RL GIGVVS AL++ FTG
Sbjct: 254 --------GLLDDIYQWATQFGDRIDETEEMLTDNRIWIDRLRGIGVVSAADALNLSFTG 305
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y+ + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 306 VMLRGSGVPWDIRKSQPYDAYDQVEFDVPVGINGDCYDRYLCRMEEFRQSLRIIHQCLNK 365
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + KI+ P R MK NME LIHHF L+T+G+ VP G+ YS +E PKGE G
Sbjct: 366 MPA--GPVRVEDYKISPPPRSAMKENMEALIHHFLLYTKGYAVPPGDTYSAIEAPKGEMG 423
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDG +PYR+ IR+PGFAHL + GHM++D V +IGT D+VFGE+DR
Sbjct: 424 VYVVSDGTERPYRVHIRAPGFAHLGGFDHLSRGHMLADAVAVIGTMDLVFGEVDR 478
>gi|304391402|ref|ZP_07373344.1| NADH dehydrogenase (quinone), d subunit [Ahrensia sp. R2A130]
gi|303295631|gb|EFL89989.1| NADH dehydrogenase (quinone), d subunit [Ahrensia sp. R2A130]
Length = 396
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 229/421 (54%), Positives = 312/421 (74%), Gaps = 27/421 (6%)
Query: 275 FPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQ 334
P ++I+++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TYLQ
Sbjct: 1 MPEVDIRNFNINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEHKTYLQ 60
Query: 335 SLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHS 394
+LPY DRLDYV+ M EHA+ AIEK+L++++P RAQ IRV++ EI R+L+H++ + + +
Sbjct: 61 ALPYFDRLDYVAPMNQEHAWCRAIEKMLDLEVPRRAQLIRVLYSEIGRILSHILNVTTQA 120
Query: 395 LDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNN 454
LD+GA L+ F ERE L+ YE GAR+H+AY+RPGGV++DLP+
Sbjct: 121 LDVGAFTPSLWGFEEREKLMVFYERACGARLHSAYFRPGGVHQDLPK------------- 167
Query: 455 KATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSM 514
+L++ I+ + +FPK ID+ E LLTDNRI+KQR V IG++S E A +
Sbjct: 168 ------------ALVEDIQSWCEQFPKVIDDIEALLTDNRIFKQRNVDIGIISLEDAWAR 215
Query: 515 GFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQ 574
GF+G M+RGSG WDLR+ QPYE Y+ + FDIP+GKN D+YDRY++R+ EMR+S KI+ Q
Sbjct: 216 GFSGVMVRGSGAAWDLRRAQPYECYDEMEFDIPVGKNCDNYDRYVIRMLEMRESTKIMAQ 275
Query: 575 CIKWLRS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEH 632
C + L + +GP+ S + K P R +MK +ME LIHHFKL+TEGF+VP GE+Y VE
Sbjct: 276 CCEKLLAPEGQGPIASPDGKAVPPKRGDMKKSMEALIHHFKLYTEGFHVPEGEVYCAVEA 335
Query: 633 PKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEID 692
PKGEFG+YLVSDG+NKPYR+K+R+PGF+HLQ++ M GHM++DV ++G+ DIVFGE+D
Sbjct: 336 PKGEFGVYLVSDGSNKPYRVKLRAPGFSHLQAMDYMCKGHMLADVGAVLGSMDIVFGEVD 395
Query: 693 R 693
R
Sbjct: 396 R 396
>gi|414173774|ref|ZP_11428401.1| NADH-quinone oxidoreductase subunit D [Afipia broomeae ATCC 49717]
gi|410890408|gb|EKS38207.1| NADH-quinone oxidoreductase subunit D [Afipia broomeae ATCC 49717]
Length = 402
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 234/416 (56%), Positives = 308/416 (74%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL EQ+TYLQ++PY
Sbjct: 12 MRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEQKTYLQAIPYF 71
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +A EKLL I +P R Q IRV++ EI R+L+HL+ + + ++D+GA
Sbjct: 72 DRLDYVAPMNQEHAFCLAAEKLLGITVPRRGQLIRVLYCEIGRILSHLLNVTTQAMDVGA 131
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHAA++R GGV++DLP
Sbjct: 132 LTPPLWGFEEREKLMVFYERASGSRMHAAFFRVGGVHQDLPP------------------ 173
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D IE + + F K +D+ ETLLTDNRI+KQR V IGVV+ ++A GF+G
Sbjct: 174 -------KLIDDIEAWCDPFLKVVDDLETLLTDNRIFKQRNVDIGVVTLDQAWEWGFSGV 226
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLRK QPYE Y ++FDIPIGKNGD YDRY +R+EEMRQS +I+KQCI+ L
Sbjct: 227 MVRGSGAAWDLRKSQPYECYAEMDFDIPIGKNGDCYDRYCIRMEEMRQSVRIMKQCIEKL 286
Query: 580 RS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
R+ +GPV+ +NKI P R MK +ME LIHHFKL+TEG +VP GE+Y+ VE PKGEF
Sbjct: 287 RAPEGQGPVVVEDNKIAPPRRGEMKRSMEALIHHFKLYTEGVHVPAGEVYAAVEAPKGEF 346
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G++LV+DG NKPY+ KIR+PGFAHLQ++ + GH+++DV I+G+ DIVFGE+DR
Sbjct: 347 GVFLVADGTNKPYKCKIRAPGFAHLQAMDFICKGHLLADVSAILGSLDIVFGEVDR 402
>gi|340722990|ref|XP_003399882.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial-like [Bombus terrestris]
Length = 492
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 237/409 (57%), Positives = 300/409 (73%), Gaps = 27/409 (6%)
Query: 285 LNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDY 344
+NFGPQHPAAHGVLRLILEL+ E V +ADPHIGLLHR TEKL E +TY+Q+LPY DRLDY
Sbjct: 111 INFGPQHPAAHGVLRLILELDSEYVIRADPHIGLLHRGTEKLIEYKTYMQALPYFDRLDY 170
Query: 345 VSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLL 404
VSMMCNE + MAIEKLLNI++P+RA+YIR +F EITR+LNH+M IG+H+LDIGAM
Sbjct: 171 VSMMCNEQCFSMAIEKLLNIEVPLRAKYIRTLFAEITRILNHIMNIGTHALDIGAMTPFF 230
Query: 405 YAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENR 464
+ F ERE L++ YE VSGARMHAAY RPGGV D+P
Sbjct: 231 WLFEEREKLMEFYERVSGARMHAAYIRPGGVALDMPL----------------------- 267
Query: 465 QGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGS 524
L+D I ++ ++F + +DE E +L++NRIW R IG V+ ++AL GF+G MLRGS
Sbjct: 268 --GLMDDIYEWASKFGERLDEVEDMLSENRIWVGRTKDIGTVTMQQALDWGFSGVMLRGS 325
Query: 525 GVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKG 584
G+KWD+RKK PY+ Y+L+ FD+PIG NGD DRYL R+EEMRQS +II QC+ + +G
Sbjct: 326 GIKWDIRKKAPYDAYDLVEFDVPIGVNGDCLDRYLCRMEEMRQSLRIIYQCLN--QMPEG 383
Query: 585 PVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSD 644
V ++ KI P R MK++ME LIHHFKLFT+GF VP G Y+ +E PKGEFG+YLVSD
Sbjct: 384 EVKVDDAKIVPPRREEMKTSMEALIHHFKLFTQGFQVPPGATYTAIEAPKGEFGVYLVSD 443
Query: 645 GANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G++KPYR KI++PGFAHL ++ M G ++D+V IIGT D+VFGEIDR
Sbjct: 444 GSSKPYRCKIKAPGFAHLAAMRHMAPGCFLADIVAIIGTLDVVFGEIDR 492
>gi|226482320|emb|CAX73759.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2 [Schistosoma
japonicum]
Length = 460
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 234/415 (56%), Positives = 298/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
E++S LNFGPQHPAAHGVLRLI+EL+GE + + DPHIGLLHR TEKL E +TY Q+LPY
Sbjct: 73 EVQSVHLNFGPQHPAAHGVLRLIMELDGESIIRLDPHIGLLHRGTEKLIEYKTYTQALPY 132
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDY SMMCNE Y +A+EKLLNI++P RA+YIR +F EITR++NH + +GS LDIG
Sbjct: 133 FDRLDYASMMCNEQCYALAVEKLLNIEVPPRAKYIRTLFAEITRIMNHCLAVGSTILDIG 192
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ + + F ERE + + YE VSGARMHAAY RPGGVY D+P
Sbjct: 193 AITPIFWLFEEREKMFEFYERVSGARMHAAYIRPGGVYLDMPL----------------- 235
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L+D I F +FP+ +DE LL DN IW R +GVVS E AL +GF+G
Sbjct: 236 --------GLMDDIYRFIQKFPQRLDEISDLLLDNPIWITRTKDVGVVSAEDALDLGFSG 287
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+KWDLRK QPY+ Y ++FD+PIG +GD YDR+++R+EEMRQS +II+QC+
Sbjct: 288 VMLRGSGIKWDLRKTQPYDAYADMDFDVPIGVHGDCYDRFMIRMEEMRQSLRIIEQCLN- 346
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ KG + ++ KI P R MK +ME LIHHFKLF+EG+ VP G Y+ +E PKGEFG
Sbjct: 347 -KMPKGEIRVDDAKICPPKRAEMKHSMEALIHHFKLFSEGYLVPPGSTYTAIEAPKGEFG 405
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG NKPYR KI++PGF+HL ++ +M G +I+DVV +IGT DIVFGE+DR
Sbjct: 406 VYLVSDGTNKPYRCKIKAPGFSHLAAIDKMCRGFLIADVVAVIGTLDIVFGEVDR 460
>gi|71083585|ref|YP_266304.1| NADH dehydrogenase subunit D [Candidatus Pelagibacter ubique
HTCC1062]
gi|123646642|sp|Q4FM88.1|NUOD_PELUB RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|71062698|gb|AAZ21701.1| NADH Dehydrogenase I Chain D [Candidatus Pelagibacter ubique
HTCC1062]
Length = 391
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 237/415 (57%), Positives = 303/415 (73%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK+ LNFGPQHPAAHGVLRLILEL+GEVV KADPHIGLLHR TEKL E +TY+Q++PY
Sbjct: 4 KIKTLNLNFGPQHPAAHGVLRLILELDGEVVEKADPHIGLLHRGTEKLIENKTYMQAVPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +AIEK+L I +PIRAQ IRVMF EI R+L+H++ + + +LD+G
Sbjct: 64 FDRLDYVAPMNQEHAFALAIEKILKINVPIRAQLIRVMFCEIGRILSHILNVTTQALDVG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE SG+R+HA Y+R GGV++DLP
Sbjct: 124 ALTPSLWGFEERETLMTFYERASGSRLHANYFRAGGVHQDLPM----------------- 166
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L + I +F FPK ID+ ETLLTDNRI+KQR V IG+V+ E AL F+G
Sbjct: 167 --------GLAEDIGNFCESFPKIIDDLETLLTDNRIFKQRNVDIGIVTKEDALDYSFSG 218
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSGV WDLRK QPY+ Y L F IP+GKNGD +DRYL RIEEMR+S IIKQC+
Sbjct: 219 VMIRGSGVPWDLRKSQPYDCYEQLEFKIPVGKNGDCFDRYLCRIEEMRESVSIIKQCLS- 277
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ KGP+ S + KI+ P + ++K +ME LIHHFKLFTEG+ V EIY+ VE PKGEFG
Sbjct: 278 -KMEKGPIKSLDGKISPPPKKDIKQSMEALIHHFKLFTEGYRVDKDEIYTAVEAPKGEFG 336
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YL+SDG +KPY+ KIR+PGF+HLQ++ +I GHM++DV ++G+ DIVFGE+DR
Sbjct: 337 VYLISDGTSKPYKCKIRAPGFSHLQAMDYLIKGHMLADVPAVLGSLDIVFGEVDR 391
>gi|390449281|ref|ZP_10234890.1| NADH dehydrogenase subunit D [Nitratireductor aquibiodomus RA22]
gi|389664386|gb|EIM75881.1| NADH dehydrogenase subunit D [Nitratireductor aquibiodomus RA22]
Length = 396
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 229/416 (55%), Positives = 308/416 (74%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 6 VRNFNINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEHKTYLQAVPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +A+E+L+ I +PIR Q IRV+F EI R+LNHL+ + + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAFALAVERLIGIDVPIRGQLIRVLFSEIGRILNHLLNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE GARMHAAY+RPGGV++D+P+
Sbjct: 126 LTPPLWGFEEREKLMVFYERACGARMHAAYFRPGGVHQDIPD------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L++ I ++ F K +D+ ++LLT NRI+KQR V IGVV+ E A + GF+G
Sbjct: 168 -------ELVEDIGNWIEPFHKTVDDLDSLLTGNRIFKQRNVDIGVVTLEDAWAWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLRK QPYE Y ++FDIP+GKNGD YDRYL+R+EEMRQS KI+++C+ L
Sbjct: 221 MVRGSGAAWDLRKSQPYECYPEMDFDIPVGKNGDCYDRYLIRMEEMRQSAKIMRRCVDRL 280
Query: 580 RSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+ GPV + + KI P R MK +ME LIHHFKL+TEG++VP GE+Y+CVE PKGEF
Sbjct: 281 LGTERVGPVSNTDGKIVPPKRGEMKRSMEALIHHFKLYTEGYHVPEGEVYACVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG+NKPYR K+R+PGFAHLQ++ + GH+++DV ++G+ DIVFGE+DR
Sbjct: 341 GVYLVSDGSNKPYRCKLRAPGFAHLQAMDFLCRGHLLADVAAVLGSLDIVFGEVDR 396
>gi|239831689|ref|ZP_04680018.1| NADH dehydrogenase I, D subunit [Ochrobactrum intermedium LMG 3301]
gi|239823956|gb|EEQ95524.1| NADH dehydrogenase I, D subunit [Ochrobactrum intermedium LMG 3301]
Length = 404
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 235/428 (54%), Positives = 310/428 (72%), Gaps = 28/428 (6%)
Query: 269 HPFRK-DFPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLA 327
P RK + +++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL
Sbjct: 2 QPNRKLNMAETQVRNFNINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLM 61
Query: 328 EQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHL 387
E +TYLQ+LPY+DRLDYV+ M EHAY +A+E+LL I +P R Q IRV++ EI R+LNHL
Sbjct: 62 EAKTYLQALPYLDRLDYVAPMNQEHAYALAVERLLGIDVPKRGQLIRVLYSEIGRILNHL 121
Query: 388 MWIGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYK 447
+ + + ++D+GA+ L+ F ERE L+ YE GARMHAAY+RPGGV++DLP+
Sbjct: 122 LNVTTQAMDVGALTPPLWGFEEREKLMVFYERACGARMHAAYFRPGGVHQDLPD------ 175
Query: 448 SSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVS 507
L++ I + + F K ++ + L+T NRI+KQR V IGVV
Sbjct: 176 -------------------QLVEDIGKWIDPFFKTLNNLDDLITPNRIFKQRNVDIGVVK 216
Query: 508 PERALSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQ 567
E A + GF+G M+RGSG WDLRK QPYE YN + FDIP+GKNGD YDRYL+R+EEMRQ
Sbjct: 217 LEDAWAWGFSGVMVRGSGAAWDLRKSQPYECYNEMEFDIPVGKNGDCYDRYLIRMEEMRQ 276
Query: 568 SNKIIKQCIKWL--RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGE 625
S KI++QC+ L + GPV + +NKI P R MK +ME LIHHFKL+TEG++VP GE
Sbjct: 277 SAKIMRQCVDLLLGKERVGPVSNADNKIVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGE 336
Query: 626 IYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQD 685
+Y+ VE PKGEFG++LVSDG+NKPYR K+R+PGFAHLQ++ + GHM++DV I+G+ D
Sbjct: 337 VYAAVEAPKGEFGVFLVSDGSNKPYRCKLRAPGFAHLQAMDFLCRGHMLADVSAILGSLD 396
Query: 686 IVFGEIDR 693
IVFGE+DR
Sbjct: 397 IVFGEVDR 404
>gi|156061625|ref|XP_001596735.1| NADH dehydrogenase I, D subunit [Sclerotinia sclerotiorum 1980]
gi|154700359|gb|EDO00098.1| NADH dehydrogenase I, D subunit [Sclerotinia sclerotiorum 1980
UF-70]
Length = 473
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 235/415 (56%), Positives = 297/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILEL GE + ++DPH+GLLHR TEKL E +TY+Q+LPY
Sbjct: 86 KIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRSDPHVGLLHRGTEKLIEYKTYIQALPY 145
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLN++IP RA++IR +F EITR+LNHLM + SH++D+G
Sbjct: 146 FDRLDYVSMMTNEQCFSLAVEKLLNVEIPERAKWIRTLFGEITRILNHLMSVLSHAMDVG 205
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV++D+P
Sbjct: 206 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPV----------------- 248
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E LLTDNRIW R G+GVVS AL++GFTG
Sbjct: 249 --------GLLDDIYQWATQFGDRIDETEELLTDNRIWIGRTKGVGVVSAADALNLGFTG 300
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 301 VMLRGSGVPWDVRKSQPYDAYGEVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLN- 359
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ GPV + KI+ P R MK NME LIHHF LFT+G+ VP GE YS +E PKGE G
Sbjct: 360 -KMPPGPVRVEDYKISPPPRAAMKENMEALIHHFLLFTKGYTVPPGETYSAIEAPKGEMG 418
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDG+ +PYR KIR+PGFAHL ++ GH+++D V IIGT D+VFGE+DR
Sbjct: 419 VYVVSDGSERPYRCKIRAPGFAHLSGFDQISRGHLLADAVAIIGTMDLVFGEVDR 473
>gi|384491717|gb|EIE82913.1| NADH-ubiquinone oxidoreductase [Rhizopus delemar RA 99-880]
Length = 459
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 231/414 (55%), Positives = 301/414 (72%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRLILEL GE + +ADPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 73 LRNFTVNFGPQHPAAHGVLRLILELNGEEIVRADPHIGLLHRGTEKLIEYKTYLQALPYF 132
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMM NE AY +A+EKLLNI++P RA+YIR MF EITR+LNH+M + +H++D+GA
Sbjct: 133 DRLDYVSMMTNEQAYSLAVEKLLNIEVPERAKYIRTMFGEITRILNHIMAVMTHAMDVGA 192
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L++ YE VSGARMHAAY RPGGV D+P
Sbjct: 193 LTPFLWMFEEREKLMEFYERVSGARMHAAYVRPGGVALDIPH------------------ 234
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LL+ I D++ +F IDE E LL+ NRIW+ R +GVV+ + A F+G
Sbjct: 235 -------GLLEDIHDWSAQFGDRIDEVEELLSANRIWQVRTRDVGVVTAQEAQDWSFSGV 287
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
++RGSG+KWD+RK PY+ Y+ + FD+P+G+NGD YDRYL R+EEMRQS +II QC+
Sbjct: 288 LVRGSGIKWDIRKVAPYDAYDQVEFDVPVGQNGDCYDRYLCRMEEMRQSLRIINQCVN-- 345
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ +G + +++ K+T P R MK NME LIHHFKL++EG+ VP G+ Y+ +E PKGEFG+
Sbjct: 346 KMPEGVIKTDDWKVTPPPRAAMKENMEALIHHFKLYSEGYSVPAGDTYTVIEAPKGEFGV 405
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+N+PYR KIR+PGF HLQ M H++ D+VTIIGT DIVFGE+DR
Sbjct: 406 YLVSDGSNRPYRCKIRAPGFTHLQGSDFMSRNHLLPDMVTIIGTMDIVFGEVDR 459
>gi|86749693|ref|YP_486189.1| NADH dehydrogenase subunit D [Rhodopseudomonas palustris HaA2]
gi|123004159|sp|Q2IWY2.1|NUOD_RHOP2 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|86572721|gb|ABD07278.1| NADH dehydrogenase I, D subunit [Rhodopseudomonas palustris HaA2]
Length = 401
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 234/416 (56%), Positives = 307/416 (73%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL EQ+TYLQ++PY
Sbjct: 11 LRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEQKTYLQAIPYF 70
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +A EKLL I+ P RAQ IRV++ EI R+L+HL+ + + ++D+GA
Sbjct: 71 DRLDYVAPMNQEHAFCLAAEKLLGIEAPRRAQLIRVLYCEIGRILSHLLNVTTQAMDVGA 130
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHAAY+R GGV++DLP
Sbjct: 131 LTPPLWGFEEREKLMMFYERASGSRMHAAYFRIGGVHQDLPP------------------ 172
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I+++ + F + +D+ ETLLTDNRI+KQR V IGVV+ E+A GF+G
Sbjct: 173 -------KLIDDIDNWCDNFIQTVDDLETLLTDNRIFKQRNVDIGVVTLEQAWEWGFSGV 225
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLRK QPYE Y ++FD+PIGKNGD YDRY +R+EEMRQS +I+KQCI +
Sbjct: 226 MVRGSGAAWDLRKSQPYECYAEMDFDVPIGKNGDCYDRYCIRVEEMRQSVRIMKQCIAKM 285
Query: 580 R--SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
R + +G V ++NKI P R MK +ME LIHHFKL+TEGF VP GE+Y VE PKGEF
Sbjct: 286 REPAGQGRVAVDDNKIFPPRRGEMKRSMESLIHHFKLYTEGFRVPAGEVYVAVEAPKGEF 345
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG NKPY+ K+R+PGFAHLQ++ + GH+++DV I+G+ DIVFGE+DR
Sbjct: 346 GVYLVSDGTNKPYKCKVRAPGFAHLQAMDFICRGHLLADVSAILGSLDIVFGEVDR 401
>gi|162148808|ref|YP_001603269.1| NADH dehydrogenase subunit D [Gluconacetobacter diazotrophicus PAl
5]
gi|161787385|emb|CAP56980.1| putative NADH-ubiquinone oxidoreductase subunit D
[Gluconacetobacter diazotrophicus PAl 5]
Length = 426
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 234/417 (56%), Positives = 302/417 (72%), Gaps = 27/417 (6%)
Query: 277 VIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSL 336
+EI S+ LNFGPQHP+AHGVLRL+LE+EGEVV +A PHIGLLHR TEKL E +TY ++L
Sbjct: 37 TVEIDSHALNFGPQHPSAHGVLRLVLEMEGEVVARAIPHIGLLHRGTEKLIEYKTYPKAL 96
Query: 337 PYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLD 396
PY DRLDYVS MC E A+ +A EKLL I IP RA++IRVMF EITR+LNH++ + + LD
Sbjct: 97 PYFDRLDYVSPMCEEQAFALATEKLLGIDIPDRAKWIRVMFAEITRILNHILNLTALGLD 156
Query: 397 IGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKA 456
GA+ L+ + ERE L++ YEA SGAR HA Y+RPGGV RDLP
Sbjct: 157 CGAVTPALWGYEEREKLIEFYEAASGARFHANYFRPGGVSRDLP---------------- 200
Query: 457 TKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGF 516
L D I ++ +FP ID+ E+LLT+NRIWKQR VGIG+ + E+AL+ GF
Sbjct: 201 ---------AGLEDRIAEWARQFPAWIDDLESLLTNNRIWKQRTVGIGIFTTEQALAWGF 251
Query: 517 TGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCI 576
+GP LR SGV WDLR+ QPY+ Y+ + F+IP+ + GD YDRYL+R+ EMR+S +I++QC+
Sbjct: 252 SGPCLRASGVPWDLRRAQPYDNYDKVEFNIPVARQGDCYDRYLIRVAEMRESVRIVEQCL 311
Query: 577 KWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
++ GP+ ++KIT P R MK +ME LIHHFKLFTEG++VP G Y+ VE PKGE
Sbjct: 312 AQMKP--GPIKIQDHKITPPPRREMKRSMEALIHHFKLFTEGYHVPPGATYTAVESPKGE 369
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YLV+DG+N+PYR KIR GFAHLQ++ EM HM++D V IIG+ D+VFGEIDR
Sbjct: 370 FGVYLVADGSNRPYRCKIRPTGFAHLQAIDEMSRRHMLADAVAIIGSLDLVFGEIDR 426
>gi|119384979|ref|YP_916035.1| NADH dehydrogenase subunit D [Paracoccus denitrificans PD1222]
gi|218527938|sp|A1B495.1|NUOD_PARDP RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I, subunit 4; AltName: Full=NADH
dehydrogenase I, subunit D; AltName: Full=NADH-quinone
oxidoreductase subunit 4; Short=NQO4; AltName:
Full=NDH-1, subunit 4; AltName: Full=NDH-1, subunit D
gi|119374746|gb|ABL70339.1| NADH dehydrogenase subunit D [Paracoccus denitrificans PD1222]
Length = 412
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 232/414 (56%), Positives = 302/414 (72%), Gaps = 25/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
I+++ +NFGPQHPAAHGVLR++LEL+GE+V +ADPHIGLLHR TEKL E RTYLQ+LPY+
Sbjct: 24 IRNFNINFGPQHPAAHGVLRMVLELDGEIVERADPHIGLLHRGTEKLMESRTYLQNLPYL 83
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +AIE+L IP RA IRV++ EI R+LNHLM + + ++D+GA
Sbjct: 84 DRLDYVAPMNQEHAWCLAIERLTGTVIPRRASLIRVLYSEIGRILNHLMGVTTGAMDVGA 143
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F RE+L+ YE GAR+HAAY+RPGGV++DLP
Sbjct: 144 LTPPLWGFEAREELMIFYERACGARLHAAYFRPGGVHQDLPP------------------ 185
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD IE++ RFPK +D+ +TLLT+NRI+KQRLV IG+V+ AL G+TG
Sbjct: 186 -------DLLDDIEEWCERFPKLVDDLDTLLTENRIFKQRLVDIGIVTEADALDWGYTGV 238
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG+ WDLR+ QPYE Y+ +F IP+G+NGD YDRYL R+ EMR+S KI++Q ++ L
Sbjct: 239 MVRGSGLAWDLRRSQPYECYDEFDFQIPVGRNGDCYDRYLCRMAEMRESCKIMQQAVQKL 298
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
R+ + K+T P R MK +ME LIHHFKL+TEGF VP GE+Y+ VE PKGEFG+
Sbjct: 299 RAEPAGDVLARGKLTPPRRAEMKRDMESLIHHFKLYTEGFKVPAGEVYAAVEAPKGEFGV 358
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLV+DG NKP+R K+R+PGFAHLQS+ M GHM++DV II T DIVFGE+DR
Sbjct: 359 YLVADGTNKPWRAKLRAPGFAHLQSIDWMSRGHMLADVPAIIATLDIVFGEVDR 412
>gi|240850586|ref|YP_002971986.1| NADH dehydrogenase I subunit D [Bartonella grahamii as4aup]
gi|240267709|gb|ACS51297.1| NADH dehydrogenase I subunit D [Bartonella grahamii as4aup]
Length = 396
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 233/418 (55%), Positives = 308/418 (73%), Gaps = 27/418 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
+ ++++ +NFGPQHPAAHGVLR++LEL+GEVV + DPHIGLLHR TEKL E +TYLQ+ P
Sbjct: 4 VNVRNFNINFGPQHPAAHGVLRMVLELDGEVVERVDPHIGLLHRGTEKLMETKTYLQAGP 63
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y+DRLDYV+ M EHA+V+AIEKLL+IK+P R Q IRV+F EI R+LNHL+ + + ++D+
Sbjct: 64 YLDRLDYVAPMNQEHAFVLAIEKLLDIKVPKRGQLIRVLFSEIGRILNHLLNVTTQAMDV 123
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GA+ L+ F +RE L+ YE GAR+HA Y+RPGGV++DLPE
Sbjct: 124 GALTPPLWGFEQRERLMIFYERACGARLHANYFRPGGVHQDLPE---------------- 167
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
SL++ I +F + F + + + L+T NRI+KQR V IGVVS + A + GF+
Sbjct: 168 ---------SLVEDIGNFIDPFLVALGKLDALVTPNRIFKQRNVDIGVVSIDEAWARGFS 218
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
G M+RG+GV WDLRK QPYE Y+ + FDIP+GKN D YDRYL+R+EEMRQS KI++QC++
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYDEMEFDIPVGKNSDCYDRYLIRMEEMRQSAKIMRQCVE 278
Query: 578 WLRSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
L S + GPV S + KI P R MKS+ME LIHHFKL+TEGF+ P GE+Y VE PKG
Sbjct: 279 RLLSTEKNGPVSSLDRKIVPPKRSEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFG+YLVSDG NKPYR+K+R+PGFAHLQ++ + GHM++D I+G+ DIVFGE+DR
Sbjct: 339 EFGVYLVSDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAILGSIDIVFGEVDR 396
>gi|328775921|ref|XP_397330.3| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial isoform 1 [Apis mellifera]
Length = 480
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 236/415 (56%), Positives = 303/415 (73%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
E ++ +NFGPQHPAAHGVLRL++E+ E V +ADPHIGLLHR TEKL E +TY+Q+LPY
Sbjct: 93 EFRNVVINFGPQHPAAHGVLRLLIEMNSEYVTRADPHIGLLHRGTEKLVEYKTYMQALPY 152
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMMCNE + MAIEKLLNI IP+RA+YIR +F EITR+LNH+M IG+H+LDIG
Sbjct: 153 FDRLDYVSMMCNEQCFSMAIEKLLNIDIPLRAKYIRTLFAEITRILNHIMNIGTHALDIG 212
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ + F ERE L++ YE VSGARMHAAY RPGGV D+P
Sbjct: 213 ALTPFFWLFEEREKLMEFYERVSGARMHAAYIRPGGVSLDMPL----------------- 255
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I +++++F +DE E LLT+NR+W R IGVV+ E+A+ GF+G
Sbjct: 256 --------GLLDDIYEWSSKFTLRLDEIEDLLTENRVWTGRTKDIGVVTAEQAIEWGFSG 307
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG++WD+RKK PY+ Y+L+ FD+PIG GD YDRYL R+EEMRQS +II QC+
Sbjct: 308 VMLRGSGIQWDIRKKTPYDAYDLVEFDVPIGLKGDCYDRYLCRMEEMRQSLRIIYQCLNQ 367
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ +G V ++ KI P R MK++ME LIHHFKL+T+GF VP G Y+ +E PKGEFG
Sbjct: 368 M--PEGEVRIDDAKIVPPRREEMKTSMEALIHHFKLYTQGFQVPPGSTYTAIEAPKGEFG 425
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG+++PYR KI++PGFAHL +L M G +++D+V IIGT D+VFGEIDR
Sbjct: 426 VYLVSDGSSRPYRCKIKAPGFAHLAALRHMGPGCLLADIVAIIGTLDVVFGEIDR 480
>gi|118590035|ref|ZP_01547439.1| NADH dehydrogenase subunit D [Stappia aggregata IAM 12614]
gi|118437532|gb|EAV44169.1| NADH dehydrogenase subunit D [Stappia aggregata IAM 12614]
Length = 394
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 232/415 (55%), Positives = 306/415 (73%), Gaps = 25/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL EQ+TYLQ++PY
Sbjct: 5 QVRNFNINFGPQHPAAHGVLRLVLELDGEVVTRVDPHIGLLHRGTEKLIEQKTYLQAVPY 64
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +AIE++L +++P R Q IRV++ EI RLL+HL+ + + ++D+G
Sbjct: 65 FDRLDYVAPMNQEHAFALAIERMLGVEVPKRGQLIRVLYSEIGRLLSHLLNVTTQAMDVG 124
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F RE+L+ YE GARMHAAY RPGGV++DL
Sbjct: 125 ALTPPLWGFEPREELMVFYERACGARMHAAYVRPGGVHQDLSR----------------- 167
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I DF + F + +D+ E LLTDNRI+KQR V IGVV + A + GF+G
Sbjct: 168 --------ELLDDIWDFCDPFLQTLDDIEGLLTDNRIFKQRNVDIGVVDLDDAWAWGFSG 219
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG WDLRK QPYE Y+ L+FDIPIGKNGD YDRYL+R+EEMRQS +I+KQC++
Sbjct: 220 VMVRGSGAPWDLRKSQPYECYSELDFDIPIGKNGDCYDRYLIRMEEMRQSVRIMKQCLEK 279
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L GPV S + KI P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGEFG
Sbjct: 280 LTVETGPVSSIDGKIVPPKRGEMKRSMEALIHHFKLYTEGYHVPEGEVYAAVEAPKGEFG 339
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLV+DG NKPYR KI++PG++HLQ++ + GHM++DV ++G+ DIVFGE+DR
Sbjct: 340 VYLVADGTNKPYRCKIKAPGYSHLQAMDFLCRGHMLADVSAVLGSLDIVFGEVDR 394
>gi|395789882|ref|ZP_10469390.1| NADH-quinone oxidoreductase subunit D [Bartonella taylorii 8TBB]
gi|395428104|gb|EJF94186.1| NADH-quinone oxidoreductase subunit D [Bartonella taylorii 8TBB]
Length = 396
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 230/418 (55%), Positives = 309/418 (73%), Gaps = 27/418 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
+ ++++ +NFGPQHPAAHGVLR++LEL+GEVV + DPHIGLLHR TEKL E +TYLQ++P
Sbjct: 4 VNVRNFNINFGPQHPAAHGVLRMVLELDGEVVERVDPHIGLLHRGTEKLMETKTYLQAVP 63
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y+DRLDYV+ M EHA+V+AIEKLL +++P R Q IRV+F EI R+LNHL+ + + ++D+
Sbjct: 64 YLDRLDYVAPMNQEHAFVLAIEKLLGVEVPKRGQLIRVLFSEIGRILNHLLNVTTQAMDV 123
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GA+ L+ F +RE L+ YE GAR+HA Y+RPGGV++DLPE
Sbjct: 124 GALTPPLWGFEQRERLMIFYERACGARLHANYFRPGGVHQDLPE---------------- 167
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
SL++ I +F + F + + + L+T NRI+KQR V IGVVS + A + GF+
Sbjct: 168 ---------SLIEDIGNFIDPFLIALSKLDALVTPNRIFKQRNVDIGVVSIDEAWARGFS 218
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
G M+RG+GV WDLRK QPYE Y+ ++FDIP+GKN D YDRYL+R+EEMRQS KI++QC+
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYDEMDFDIPVGKNSDCYDRYLIRMEEMRQSAKIMRQCVN 278
Query: 578 WLRSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
L S + GPV S + KI P R MKS+ME LIHHFKL+TEGF+ P GE+Y VE PKG
Sbjct: 279 RLLSTEKNGPVSSLDRKIVPPKRCEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFG+YL+SDG NKPYR+K+R+PGFAHLQ+++ + GHM++D I+G+ DIVFGE+DR
Sbjct: 339 EFGVYLISDGTNKPYRVKLRAPGFAHLQAMNFLTRGHMLADATAILGSIDIVFGEVDR 396
>gi|209545444|ref|YP_002277673.1| NADH dehydrogenase subunit D [Gluconacetobacter diazotrophicus PAl
5]
gi|218534462|sp|A9HRT9.2|NUOD_GLUDA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|209533121|gb|ACI53058.1| NADH dehydrogenase I, D subunit [Gluconacetobacter diazotrophicus
PAl 5]
Length = 416
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 234/417 (56%), Positives = 302/417 (72%), Gaps = 27/417 (6%)
Query: 277 VIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSL 336
+EI S+ LNFGPQHP+AHGVLRL+LE+EGEVV +A PHIGLLHR TEKL E +TY ++L
Sbjct: 27 TVEIDSHALNFGPQHPSAHGVLRLVLEMEGEVVARAIPHIGLLHRGTEKLIEYKTYPKAL 86
Query: 337 PYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLD 396
PY DRLDYVS MC E A+ +A EKLL I IP RA++IRVMF EITR+LNH++ + + LD
Sbjct: 87 PYFDRLDYVSPMCEEQAFALATEKLLGIDIPDRAKWIRVMFAEITRILNHILNLTALGLD 146
Query: 397 IGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKA 456
GA+ L+ + ERE L++ YEA SGAR HA Y+RPGGV RDLP
Sbjct: 147 CGAVTPALWGYEEREKLIEFYEAASGARFHANYFRPGGVSRDLP---------------- 190
Query: 457 TKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGF 516
L D I ++ +FP ID+ E+LLT+NRIWKQR VGIG+ + E+AL+ GF
Sbjct: 191 ---------AGLEDRIAEWARQFPAWIDDLESLLTNNRIWKQRTVGIGIFTTEQALAWGF 241
Query: 517 TGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCI 576
+GP LR SGV WDLR+ QPY+ Y+ + F+IP+ + GD YDRYL+R+ EMR+S +I++QC+
Sbjct: 242 SGPCLRASGVPWDLRRAQPYDNYDKVEFNIPVARQGDCYDRYLIRVAEMRESVRIVEQCL 301
Query: 577 KWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
++ GP+ ++KIT P R MK +ME LIHHFKLFTEG++VP G Y+ VE PKGE
Sbjct: 302 AQMKP--GPIKIQDHKITPPPRREMKRSMEALIHHFKLFTEGYHVPPGATYTAVESPKGE 359
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YLV+DG+N+PYR KIR GFAHLQ++ EM HM++D V IIG+ D+VFGEIDR
Sbjct: 360 FGVYLVADGSNRPYRCKIRPTGFAHLQAIDEMSRRHMLADAVAIIGSLDLVFGEIDR 416
>gi|444310747|ref|ZP_21146366.1| NADH dehydrogenase subunit D [Ochrobactrum intermedium M86]
gi|443485949|gb|ELT48732.1| NADH dehydrogenase subunit D [Ochrobactrum intermedium M86]
Length = 396
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 232/417 (55%), Positives = 306/417 (73%), Gaps = 27/417 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 5 QVRNFNINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLMEAKTYLQALPY 64
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
+DRLDYV+ M EHAY +A+E+LL I +P R Q IRV++ EI R+LNHL+ + + ++D+G
Sbjct: 65 LDRLDYVAPMNQEHAYALAVERLLGIDVPKRGQLIRVLYSEIGRILNHLLNVTTQAMDVG 124
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE GARMHAAY+RPGGV++DLP+
Sbjct: 125 ALTPPLWGFEEREKLMVFYERACGARMHAAYFRPGGVHQDLPD----------------- 167
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L++ I + + F K ++ + L+T NRI+KQR V IGVV E A + GF+G
Sbjct: 168 --------QLVEDIGKWIDPFFKTLNNLDDLITPNRIFKQRNVDIGVVKLEDAWAWGFSG 219
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG WDLRK QPYE YN + FDIP+GKNGD YDRYL+R+EEMRQS KI++QC+
Sbjct: 220 VMVRGSGAAWDLRKSQPYECYNEMEFDIPVGKNGDCYDRYLIRMEEMRQSAKIMRQCVDL 279
Query: 579 L--RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
L + GPV + +NKI P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGE
Sbjct: 280 LLGKERVGPVSNADNKIVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGE 339
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG++LVSDG+NKPYR K+R+PGFAHLQ++ + GHM++DV I+G+ DIVFGE+DR
Sbjct: 340 FGVFLVSDGSNKPYRCKLRAPGFAHLQAMDFLCRGHMLADVSAILGSLDIVFGEVDR 396
>gi|296536153|ref|ZP_06898281.1| NADH-quinone oxidoreductase subunit D [Roseomonas cervicalis ATCC
49957]
gi|296263524|gb|EFH10021.1| NADH-quinone oxidoreductase subunit D [Roseomonas cervicalis ATCC
49957]
Length = 405
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 228/417 (54%), Positives = 303/417 (72%), Gaps = 27/417 (6%)
Query: 277 VIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSL 336
+EI S+ +NFGPQHPAAHGVLRLILE++GEVV +ADPHIGLLHR TEKL E ++YLQ+L
Sbjct: 16 TVEIDSHTINFGPQHPAAHGVLRLILEMQGEVVERADPHIGLLHRGTEKLIEHKSYLQAL 75
Query: 337 PYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLD 396
PY DRLDYV+ M EH + +A EKLL I+ PIRAQYIRV+F EI+R+LNH++ I +++LD
Sbjct: 76 PYFDRLDYVAPMAQEHCFALATEKLLGIEAPIRAQYIRVLFAEISRILNHILNITTYALD 135
Query: 397 IGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKA 456
+GA L+ F +RE LL+ Y+A SG+ HA Y+R GGV +DLP
Sbjct: 136 VGATTPSLWGFEQREILLEFYDATSGSHYHANYFRAGGVAKDLP---------------- 179
Query: 457 TKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGF 516
L D I + +FPK +D+ E LLT NRI+KQR V IGV++ E A++ GF
Sbjct: 180 ---------AGLTDRIAGWAEQFPKFVDDVERLLTGNRIFKQRTVDIGVMTAEEAMAWGF 230
Query: 517 TGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCI 576
+GP +R SG WDLR+ QPY++Y+ + F+IP+G +GD Y+RYLVRI EMR+S KIIKQC+
Sbjct: 231 SGPCIRASGCAWDLRRSQPYDVYDQMEFEIPVGSHGDCYERYLVRIAEMRESLKIIKQCL 290
Query: 577 KWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
+ GP+ ++KI P R MK +ME LIHHFKL++EG++VP G Y+ VE PKGE
Sbjct: 291 AQMPG--GPIKVQDSKIAPPKRAEMKRSMEALIHHFKLYSEGYHVPEGSTYTAVEAPKGE 348
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG++LV+DG N+PYR KIR+PGFAHLQ++ ++ GHM++D V++IG+ DIVFGEIDR
Sbjct: 349 FGVFLVADGTNRPYRCKIRAPGFAHLQAMEKLSKGHMLADAVSVIGSLDIVFGEIDR 405
>gi|298291844|ref|YP_003693783.1| NADH dehydrogenase I subunit D [Starkeya novella DSM 506]
gi|296928355|gb|ADH89164.1| NADH dehydrogenase I, D subunit [Starkeya novella DSM 506]
Length = 399
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 232/414 (56%), Positives = 305/414 (73%), Gaps = 25/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++++NFGPQHPAAHGVLRLILEL+GE+V + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 11 VRNFQINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIEAKTYLQAVPYF 70
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ + IE+LL+I++P R Q IRV++ EI R+L+H++ + + +LD+GA
Sbjct: 71 DRLDYVAPMNQEHAFCLGIERLLDIEVPKRGQLIRVLYSEIGRILSHMLNVTTQALDVGA 130
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHAAY+RPGGV++DLP
Sbjct: 131 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDLPR------------------ 172
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
+L++ I + + F +D+ E LLTDNRI+KQR V IG+VS E A + GF+G
Sbjct: 173 -------ALIEDIAAWCDTFGPFMDDLEGLLTDNRIFKQRNVDIGIVSLEDAFAWGFSGV 225
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLRK QPYE Y+ L FDIPIGKN D+YDRY +R+EEMRQS KI++QC L
Sbjct: 226 MVRGSGAAWDLRKSQPYECYDELEFDIPIGKNCDNYDRYCIRMEEMRQSAKIMRQCCDRL 285
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
GPV + +NKI P R MK +ME LIHHFKL+TEGF+VP GE+Y+ VE PKGEFG+
Sbjct: 286 LKESGPVSAVDNKIVPPKRGEMKRSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGEFGV 345
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLV+DG NKPYR KIR+PGFAHLQ++ + G+M++DV I+G+ DIVFGE+DR
Sbjct: 346 YLVADGTNKPYRCKIRAPGFAHLQAMDFLCRGYMLADVSAILGSLDIVFGEVDR 399
>gi|170742514|ref|YP_001771169.1| NADH dehydrogenase I subunit D [Methylobacterium sp. 4-46]
gi|218534419|sp|B0ULK7.1|NUOD_METS4 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|168196788|gb|ACA18735.1| NADH dehydrogenase I, D subunit [Methylobacterium sp. 4-46]
Length = 396
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 229/416 (55%), Positives = 307/416 (73%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
I+++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E +TYLQ+ PY
Sbjct: 6 IRNFSINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIEVKTYLQATPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +A+EKLL I++P RA+ IR +F EI RLL+HL+ + + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAFCLAVEKLLGIEVPRRAKLIRTLFCEIGRLLSHLLNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SGAR+HA Y+RPGGV++DLP
Sbjct: 126 LTPPLWGFEEREKLMIFYERASGARLHANYFRPGGVHQDLPP------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D IE F + F + +D+ + L+ NRI+KQR V IG+V+ + A++ GF+G
Sbjct: 168 -------GLIDDIEAFCDPFLQVVDDLDALVIGNRIFKQRNVDIGIVTVDAAMAWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG+ WDLR+ QPYE Y + FD+P+GKNGD+YDR ++R+EEMRQS +I+KQC+ L
Sbjct: 221 MLRGSGIPWDLRRAQPYEAYEEMEFDVPVGKNGDTYDRQVIRMEEMRQSVRIMKQCLAKL 280
Query: 580 RS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
R+ +GPV + + K+ P+R MK +ME LIHHFKL+TEGF+VP GE+Y+ VE PKGEF
Sbjct: 281 RAPDGQGPVTTQDGKVAPPSRREMKRSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLV+DG NKPYR KIR+PGFAHLQ++ M GHM++DV I+GT DIVFGE+DR
Sbjct: 341 GVYLVADGTNKPYRCKIRAPGFAHLQAMDWMCRGHMLADVSCILGTLDIVFGEVDR 396
>gi|91761994|ref|ZP_01263959.1| NADH dehydrogenase delta subunit [Candidatus Pelagibacter ubique
HTCC1002]
gi|91717796|gb|EAS84446.1| NADH dehydrogenase delta subunit [Candidatus Pelagibacter ubique
HTCC1002]
Length = 391
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 237/415 (57%), Positives = 303/415 (73%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK+ LNFGPQHPAAHGVLRLILEL+GEVV KADPHIGLLHR TEKL E +TY+Q++PY
Sbjct: 4 KIKTLNLNFGPQHPAAHGVLRLILELDGEVVEKADPHIGLLHRGTEKLIENKTYMQAVPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +AIEK+L I +PIRAQ IRVMF EI R+L+H++ + + +LD+G
Sbjct: 64 FDRLDYVAPMNQEHAFALAIEKILKINVPIRAQLIRVMFCEIGRILSHILNVTTQALDVG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE SG+R+HA Y+R GGV++DLP
Sbjct: 124 ALTPSLWGFEERETLMTFYERASGSRLHANYFRAGGVHQDLPM----------------- 166
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L + I +F FPK ID+ ETLLTDNRI+KQR V IG+V+ E AL F+G
Sbjct: 167 --------GLEEDIGNFCESFPKIIDDLETLLTDNRIFKQRNVDIGIVTKEDALDYSFSG 218
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSGV WDLRK QPY+ Y L F IP+GKNGD +DRYL RIEEMR+S IIKQC+
Sbjct: 219 VMIRGSGVPWDLRKSQPYDCYEQLEFKIPVGKNGDCFDRYLCRIEEMRESVSIIKQCLS- 277
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ KGP+ S + KI+ P + ++K +ME LIHHFKLFTEG+ V EIY+ VE PKGEFG
Sbjct: 278 -KMEKGPIKSLDGKISPPPKKDIKQSMEALIHHFKLFTEGYRVDKDEIYTAVEAPKGEFG 336
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YL+SDG +KPY+ KIR+PGF+HLQ++ +I GHM++DV ++G+ DIVFGE+DR
Sbjct: 337 VYLISDGTSKPYKCKIRAPGFSHLQAMDYLIKGHMLADVPAVLGSLDIVFGEVDR 391
>gi|192291669|ref|YP_001992274.1| NADH dehydrogenase subunit D [Rhodopseudomonas palustris TIE-1]
gi|218534442|sp|B3Q7N3.1|NUOD_RHOPT RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|192285418|gb|ACF01799.1| NADH dehydrogenase I, D subunit [Rhodopseudomonas palustris TIE-1]
Length = 402
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 233/416 (56%), Positives = 311/416 (74%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL EQ+TYLQ++PY
Sbjct: 12 VRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEQKTYLQAIPYF 71
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +A+EKLL I +P RAQ IRV++ EI R+L+HL+ + + ++D+GA
Sbjct: 72 DRLDYVAPMNQEHAFCLAVEKLLGIAVPRRAQLIRVLYAEIGRILSHLLNVTTQAMDVGA 131
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHAAY+R GGV++DLP
Sbjct: 132 LTPPLWGFEEREKLMMFYERASGSRMHAAYFRVGGVHQDLPP------------------ 173
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I+ + + FP +++ + LL+DNRI+KQR V IGVV+ ++A S GF+G
Sbjct: 174 -------KLVDDIDAWCDAFPAVVNDLDRLLSDNRIFKQRNVDIGVVTLDQAWSWGFSGV 226
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLRK QPYE Y L+F++PIGKNGD YDRY +R+EEMRQS +I+KQCI L
Sbjct: 227 MVRGSGAAWDLRKSQPYECYAELDFEVPIGKNGDCYDRYHIRMEEMRQSVRIMKQCIAKL 286
Query: 580 RS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
R+ +GPV+ +++KI P R MK +ME LIHHFKL+TEGF+VP GE+Y VE PKGEF
Sbjct: 287 RAPDGQGPVVVDDHKIFPPRRGEMKRSMEALIHHFKLYTEGFHVPAGEVYVAVEAPKGEF 346
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG+NKPY+ KIR+PGFAHLQ++ + GH+++DV I+G+ DIVFGE+DR
Sbjct: 347 GVYLVSDGSNKPYKCKIRAPGFAHLQAMDFLSRGHLLADVSAILGSLDIVFGEVDR 402
>gi|222475162|ref|YP_002563578.1| NADH dehydrogenase subunit D [Anaplasma marginale str. Florida]
gi|255003146|ref|ZP_05278110.1| NADH dehydrogenase subunit D [Anaplasma marginale str. Puerto Rico]
gi|255004272|ref|ZP_05279073.1| NADH dehydrogenase subunit D [Anaplasma marginale str. Virginia]
gi|222419299|gb|ACM49322.1| NADH dehydrogenase chain D (nuoD) [Anaplasma marginale str.
Florida]
Length = 398
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 239/414 (57%), Positives = 293/414 (70%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
IK LNFGPQHPAAHGV+RLILE+ GEV+ + DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 12 IKPMTLNFGPQHPAAHGVMRLILEMSGEVIERIDPHIGLLHRGTEKLIEYKTYLQALPYF 71
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVS M EHAY + +EKLL +P RA+YIRV+F E+TR+LNHL+ + S +LD GA
Sbjct: 72 DRLDYVSPMSQEHAYSLCVEKLLQCVVPPRAKYIRVIFCELTRVLNHLLNVSSQALDTGA 131
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
LL+ F ERE LL YE SGAR HAAY RPGG+ D+P+
Sbjct: 132 TTPLLWMFEERERLLSFYERASGARFHAAYIRPGGIAADVPD------------------ 173
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD I FT FPK +D+ + LLT+N IWKQR V IGVVS +AL GF+GP
Sbjct: 174 -------GLLDDIHAFTESFPKLLDDVDGLLTENSIWKQRNVDIGVVSKAQALDWGFSGP 226
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLR G+ WDLRK QPYEIY L+F +P+G NGD YDRYLVR+ EMR+S II+QC+ +
Sbjct: 227 MLRACGIPWDLRKSQPYEIYETLDFKVPVGSNGDCYDRYLVRMAEMRESISIIRQCLNGI 286
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+GPV +++ KI P R +K +ME LIHHFKLF+EG+ V GE Y VE PKGEFG+
Sbjct: 287 --PEGPVKTDDRKIAPPRREELKYSMEALIHHFKLFSEGYKVAKGEAYVAVEAPKGEFGV 344
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
Y+VSDG N+PYR +IR+PGFAHLQ++ M GHM++D+ IIG+ DIVFGEIDR
Sbjct: 345 YIVSDGTNRPYRCRIRAPGFAHLQAIDAMARGHMLADLTAIIGSLDIVFGEIDR 398
>gi|384490628|gb|EIE81850.1| NADH-ubiquinone oxidoreductase [Rhizopus delemar RA 99-880]
Length = 448
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 231/414 (55%), Positives = 301/414 (72%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRLILEL GE + +ADPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 62 LRNFTVNFGPQHPAAHGVLRLILELNGEEIVRADPHIGLLHRGTEKLIEYKTYLQALPYF 121
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMM NE AY +A+EKLLNI++P RA+YIR MF EITR+LNH+M + +H++D+GA
Sbjct: 122 DRLDYVSMMTNEQAYSLAVEKLLNIEVPERAKYIRTMFGEITRILNHIMAVMTHAMDVGA 181
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L++ YE VSGARMHAAY RPGGV D+P
Sbjct: 182 LTPFLWMFEEREKLMEFYERVSGARMHAAYVRPGGVALDIPH------------------ 223
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LL+ I D++ +F IDE E LL+ NRIW+ R +GVV+ + A F+G
Sbjct: 224 -------GLLEDIHDWSAQFGDRIDEVEELLSANRIWQVRTRDVGVVTAQEAQDWSFSGV 276
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
++RGSG+KWD+RK PY+ Y+ + FD+P+G+NGD YDRYL R+EEMRQS +II QC+
Sbjct: 277 LVRGSGIKWDIRKVAPYDAYDQVEFDVPVGQNGDCYDRYLCRMEEMRQSLRIINQCVN-- 334
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ +G + +++ K+T P R MK NME LIHHFKL++EG+ VP G+ Y+ +E PKGEFG+
Sbjct: 335 KMPEGVIKTDDWKVTPPPRAAMKENMEALIHHFKLYSEGYSVPAGDTYTVIEAPKGEFGV 394
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+N+PYR KIR+PGF HLQ M H++ D+VTIIGT DIVFGE+DR
Sbjct: 395 YLVSDGSNRPYRCKIRAPGFTHLQGSDFMSRNHLLPDMVTIIGTMDIVFGEVDR 448
>gi|90417840|ref|ZP_01225752.1| NADH dehydrogenase I, D subunit [Aurantimonas manganoxydans
SI85-9A1]
gi|90337512|gb|EAS51163.1| NADH dehydrogenase I, D subunit [Aurantimonas manganoxydans
SI85-9A1]
Length = 396
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 232/418 (55%), Positives = 306/418 (73%), Gaps = 27/418 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
I+++++ +NFGPQHPAAHGVLRL++EL+GE+V + DPHIGLLHR TEKL E +TYLQS+P
Sbjct: 4 IDVRNFNINFGPQHPAAHGVLRLVVELDGEIVERVDPHIGLLHRGTEKLIEHKTYLQSIP 63
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y DRLDYV+ M EHA+ +A+E+L +++P R Q IRV++ EI R+L+HL+ + + ++D+
Sbjct: 64 YFDRLDYVAPMNQEHAFCLAVERLTGVEVPKRGQLIRVLYSEIGRILSHLLNVTTQAMDV 123
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GA+ L+ F ERE L+ YE SG+R+HAAY+RPGGV+ DLP+
Sbjct: 124 GALTPPLWGFEEREKLMVFYERASGSRLHAAYFRPGGVHADLPQ---------------- 167
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
L++ I + + F K D+ E LLTDNRI+KQR V IGVV E A +MGF+
Sbjct: 168 ---------QLIEDIGAWCDPFLKVCDDIEGLLTDNRIFKQRNVDIGVVGIEDAWAMGFS 218
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
G M+RGSGV WDLRK QPYE Y+ ++FDIP+GKNGD YDRYL+R+ EMR+S KI+KQCI
Sbjct: 219 GVMIRGSGVAWDLRKSQPYECYDEMDFDIPVGKNGDCYDRYLIRMIEMRESVKIMKQCIA 278
Query: 578 WLRS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
L + GPV + KI P R MK +ME LIHHFKL+TEGF+VP GE+Y+ VE PKG
Sbjct: 279 QLTGEHSTGPVSATEGKIVPPKRGQMKRSMEALIHHFKLYTEGFHVPEGEVYAAVEAPKG 338
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFG+YLV+DG NKPYR KI++PGFAHLQ++ + GHM++DV I+GT DIVFGE+DR
Sbjct: 339 EFGVYLVADGTNKPYRCKIKAPGFAHLQAMDMLCRGHMLADVSAILGTLDIVFGEVDR 396
>gi|163868370|ref|YP_001609579.1| NADH dehydrogenase subunit D [Bartonella tribocorum CIP 105476]
gi|218534391|sp|A9IUP7.1|NUOD_BART1 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|161018026|emb|CAK01584.1| NADH dehydrogenase I, D subunit [Bartonella tribocorum CIP 105476]
Length = 396
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 232/418 (55%), Positives = 307/418 (73%), Gaps = 27/418 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
+ ++++ +NFGPQHPAAHGVLR++LEL+GEVV + DPHIGLLHR TEKL E +TYLQ+ P
Sbjct: 4 VNVRNFNINFGPQHPAAHGVLRMVLELDGEVVERVDPHIGLLHRGTEKLMETKTYLQAGP 63
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y+DRLDYV+ M EHA+V+AIEKLLNIK+P R Q IRV+F EI R+LNHL+ + + ++D+
Sbjct: 64 YLDRLDYVAPMNQEHAFVLAIEKLLNIKVPKRGQLIRVLFSEIGRILNHLLNVTTQAMDV 123
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GA+ L+ F +RE L+ YE GAR+HA Y+RPGGV++DLPE
Sbjct: 124 GALTPPLWGFEQRERLMIFYERACGARLHANYFRPGGVHQDLPE---------------- 167
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
SL++ I +F + F ++++ + L+T NRI+KQR V IG+VS + A + F+
Sbjct: 168 ---------SLVEDIGNFIDPFLVSLEKLDALVTPNRIFKQRNVDIGIVSIDEAWARSFS 218
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
G M+RG+GV WDLRK QPYE Y+ + FDIPIGKN D YDRYL+R+EEMRQS KI++QC++
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYDEMEFDIPIGKNSDCYDRYLIRMEEMRQSAKIMRQCVE 278
Query: 578 WL--RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
L GPV S + KI P R MKS+ME LIHHFKL+TEGF+ P GE+Y VE PKG
Sbjct: 279 RLLGAEKNGPVSSLDRKIVPPKRSEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFG+YLVSDG NKPYR+K+R+PGFAHLQ++ + GHM++D I+G+ DIVFGE+DR
Sbjct: 339 EFGVYLVSDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAILGSIDIVFGEVDR 396
>gi|146278041|ref|YP_001168200.1| NADH dehydrogenase subunit D [Rhodobacter sphaeroides ATCC 17025]
gi|218534435|sp|A4WU31.1|NUOD_RHOS5 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|145556282|gb|ABP70895.1| NADH dehydrogenase I, D subunit [Rhodobacter sphaeroides ATCC
17025]
Length = 402
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 232/415 (55%), Positives = 306/415 (73%), Gaps = 26/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 14 KLRNFNINFGPQHPAAHGVLRLVLELDGEVVERCDPHIGLLHRGTEKLMETRTYLQNLPY 73
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +AIE+L +++P RA IRV++ EI R+LNHL+ + + ++D+G
Sbjct: 74 FDRLDYVAPMNQEHAWCLAIERLTGVQVPRRASLIRVLYSEIGRVLNHLLNVTTQAMDVG 133
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE SGAR+HAAY+RPGGV++DL
Sbjct: 134 ALTPPLWGFEEREKLMVFYERASGARLHAAYFRPGGVHQDLTP----------------- 176
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L++ IE++ FPK +D+ + LLT+NRI+KQR V IGVV+ + L GF+G
Sbjct: 177 --------RLIEDIEEWAEHFPKVLDDLDGLLTENRIFKQRNVDIGVVTEKDILDWGFSG 228
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG+ WDLR+ QPYE Y+ +F IP+GKNGD YDRYL R+EEMRQS +II+QC+
Sbjct: 229 VMVRGSGLAWDLRRSQPYECYDEFDFQIPVGKNGDCYDRYLCRMEEMRQSTRIIQQCLAK 288
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR KG V++ KIT P R MK++ME LIHHFKL+TEGF+VP GE+Y+ VE PKGEFG
Sbjct: 289 LRVEKGDVLARG-KITPPPRAEMKTSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGEFG 347
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLV+DG N+PYR KIR+PGF HLQ++ + GH+++DV IIGT D+VFGEIDR
Sbjct: 348 VYLVADGTNRPYRAKIRAPGFLHLQAIDYIAKGHLLADVSAIIGTLDVVFGEIDR 402
>gi|395779974|ref|ZP_10460442.1| NADH-quinone oxidoreductase subunit D [Bartonella washoensis
085-0475]
gi|395419724|gb|EJF86020.1| NADH-quinone oxidoreductase subunit D [Bartonella washoensis
085-0475]
Length = 396
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 232/418 (55%), Positives = 306/418 (73%), Gaps = 27/418 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
+ ++++ +NFGPQHPAAHGVLR++LEL+GEVV + DPHIGLLHR TEKL E +TYLQ+ P
Sbjct: 4 VNVRNFNINFGPQHPAAHGVLRMVLELDGEVVERVDPHIGLLHRGTEKLMETKTYLQAGP 63
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y+DRLDYV+ M EHA+V+AIEKLL ++IP R Q IRV+F EI R+LNHL+ + + ++D+
Sbjct: 64 YLDRLDYVAPMNQEHAFVLAIEKLLGVEIPKRGQLIRVLFSEIGRILNHLLNVTTQAMDV 123
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GA+ L+ F +RE L+ YE GAR+HA Y+RPGGV++DLPE
Sbjct: 124 GALTPPLWGFEQREKLMIFYERACGARLHANYFRPGGVHQDLPE---------------- 167
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
SL++ I +F + F ++ + L+T NRI+KQR V IGVVS + A + GF+
Sbjct: 168 ---------SLIEDIGNFIDPFLVSLGRLDALVTPNRIFKQRNVDIGVVSIDEAWARGFS 218
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
G M+RG+GV WDLRK QPYE Y+ + FDIP+GKN D YDRYL+R+EEMRQS KI++QC+
Sbjct: 219 GVMIRGAGVPWDLRKNQPYECYDEMEFDIPVGKNSDCYDRYLIRMEEMRQSAKIMRQCVD 278
Query: 578 WLRS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
L S N GPV S + KI P R MKS+ME LIHHFKL+TEGF+ P GE+Y VE PKG
Sbjct: 279 RLLSTENNGPVSSLDRKIVPPKRCEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFG+YL+SDG NKPYR+K+R+PGFAHLQ++ + GHM++D I+G+ DIVFGE+DR
Sbjct: 339 EFGVYLISDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAILGSIDIVFGEVDR 396
>gi|39936014|ref|NP_948290.1| NADH dehydrogenase subunit D [Rhodopseudomonas palustris CGA009]
gi|81562351|sp|Q6N5M5.1|NUOD_RHOPA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|39649868|emb|CAE28390.1| NADH-ubiquinone dehydrogenase chain D [Rhodopseudomonas palustris
CGA009]
Length = 402
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 233/416 (56%), Positives = 311/416 (74%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL EQ+TYLQ++PY
Sbjct: 12 VRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEQKTYLQAIPYF 71
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +A+EKLL I +P RAQ IRV++ EI R+L+HL+ + + ++D+GA
Sbjct: 72 DRLDYVAPMNQEHAFCLAVEKLLGIAVPRRAQLIRVLYAEIGRILSHLLNVTTQAMDVGA 131
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHAAY+R GGV++DLP
Sbjct: 132 LTPPLWGFEEREKLMMFYERASGSRMHAAYFRVGGVHQDLPP------------------ 173
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I+ + + FP +++ + LL+DNRI+KQR V IGVV+ ++A S GF+G
Sbjct: 174 -------KLVDDIDAWCDAFPAVVNDLDRLLSDNRIFKQRNVDIGVVTLDQAWSWGFSGV 226
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLRK QPYE Y L+F++PIGKNGD YDRY +R+EEMRQS +I+KQCI L
Sbjct: 227 MVRGSGAAWDLRKSQPYECYAELDFEVPIGKNGDCYDRYHIRMEEMRQSVRIMKQCIAKL 286
Query: 580 RS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
R+ +GPV+ +++KI P R MK +ME LIHHFKL+TEGF+VP GE+Y VE PKGEF
Sbjct: 287 RAPHGQGPVVVDDHKIFPPRRGEMKRSMEALIHHFKLYTEGFHVPAGEVYVAVEAPKGEF 346
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG+NKPY+ KIR+PGFAHLQ++ + GH+++DV I+G+ DIVFGE+DR
Sbjct: 347 GVYLVSDGSNKPYKCKIRAPGFAHLQAMDFLSRGHLLADVSAILGSLDIVFGEVDR 402
>gi|395781506|ref|ZP_10461924.1| NADH-quinone oxidoreductase subunit D [Bartonella rattimassiliensis
15908]
gi|395420939|gb|EJF87197.1| NADH-quinone oxidoreductase subunit D [Bartonella rattimassiliensis
15908]
Length = 396
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 233/418 (55%), Positives = 307/418 (73%), Gaps = 27/418 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
+ ++++ +NFGPQHPAAHGVLR++LEL+GEVV + DPHIGLLHR TEKL E +TYLQ+ P
Sbjct: 4 VNVRNFNINFGPQHPAAHGVLRMVLELDGEVVERVDPHIGLLHRGTEKLMETKTYLQAGP 63
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y+DRLDYV+ M EHA+V+AIEKLL+I++P + Q IRV+F EI R+LNHL+ + + ++D+
Sbjct: 64 YLDRLDYVAPMNQEHAFVLAIEKLLDIEVPKKGQLIRVLFSEIGRILNHLLNVTTQAMDV 123
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GA+ L+ F +RE L+ YE GAR+HA Y+RPGGV++DLPE
Sbjct: 124 GALTPPLWGFEQREKLMIFYERACGARLHANYFRPGGVHQDLPE---------------- 167
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
SL++ I DF + F ++ + + L+T NRI+KQR V IGVVS + A + GF+
Sbjct: 168 ---------SLVEDIGDFIDPFLVSLGKLDALVTPNRIFKQRNVDIGVVSIDEAWARGFS 218
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
G M+RG+GV WDLRK QPYE Y+ + FDIPIGKN D YDRYL+R+EEMRQS KI++QC++
Sbjct: 219 GVMIRGAGVSWDLRKSQPYECYDEMEFDIPIGKNSDCYDRYLIRMEEMRQSAKIMRQCVE 278
Query: 578 WLR--SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
L GPV S + KI P R MKS+ME LIHHFKL+TEGF+ P GE+Y VE PKG
Sbjct: 279 RLLGVEKNGPVSSLDRKIVPPKRSEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFG+YLVSDG NKPYRIK+R+PGFAHLQ++ + GHM++D I+G+ DIVFGE+DR
Sbjct: 339 EFGVYLVSDGTNKPYRIKLRAPGFAHLQAMDFLTRGHMLADATAILGSIDIVFGEVDR 396
>gi|429853399|gb|ELA28474.1| nadh-ubiquinone oxidoreductase 49 kda subunit [Colletotrichum
gloeosporioides Nara gc5]
Length = 474
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 230/415 (55%), Positives = 297/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILE+ GE + +ADPH+GLLHR TEKL E +TY Q+LPY
Sbjct: 87 KIRHYTVNFGPQHPAAHGVLRLILEINGEEIVRADPHVGLLHRGTEKLCEYKTYTQALPY 146
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLN++IP RA++IR +F EITR+LNHLM + SH++D+G
Sbjct: 147 FDRLDYVSMMTNEQCFALAVEKLLNVEIPDRAKWIRTLFGEITRILNHLMSVLSHAMDVG 206
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV++D+P
Sbjct: 207 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPV----------------- 249
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E +LTDNRIW QRL G+GV+S AL++ FTG
Sbjct: 250 --------GLLDDIYQWATQFGDRIDETEEMLTDNRIWIQRLQGVGVISAAEALNLSFTG 301
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y+ + FD+P+G GD YDRYL R+EE RQS +II QC+
Sbjct: 302 VMLRGSGVPWDIRKSQPYDAYDQVEFDVPVGVRGDCYDRYLCRMEEFRQSLRIIHQCLNK 361
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GP+ + KI+ P R MK NME LIHHF L+T+G+ VP GE YS +E PKGE G
Sbjct: 362 MPA--GPIRCEDYKISPPPRSAMKENMEALIHHFLLYTKGYTVPPGETYSAIEAPKGEMG 419
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDG+ +PYR+ IR+PGFAHL + GHM++D V +IGT D+VFGE+DR
Sbjct: 420 VYVVSDGSERPYRVHIRAPGFAHLGGFDHVCKGHMLADAVAVIGTMDLVFGEVDR 474
>gi|319405695|emb|CBI79318.1| NADH dehydrogenase I, D subunit [Bartonella sp. AR 15-3]
Length = 396
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 231/421 (54%), Positives = 310/421 (73%), Gaps = 27/421 (6%)
Query: 275 FPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQ 334
P + ++++ +NFGPQHPAAHGVLR++LEL+GEVV + DPHIGLLHR TEKL E +TYLQ
Sbjct: 1 MPEVNVRNFNINFGPQHPAAHGVLRMVLELDGEVVERVDPHIGLLHRGTEKLMETKTYLQ 60
Query: 335 SLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHS 394
+ PY+DRLDYV+ M EHA+V+AIEKLL I++P R Q IRV+F EI R+LNHL+ + + +
Sbjct: 61 AGPYLDRLDYVAPMNQEHAFVLAIEKLLGIEVPKRGQLIRVLFSEIGRILNHLLNVTTQA 120
Query: 395 LDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNN 454
+D+GA+ L+ F +RE L+ YE GAR+HA Y+RPGGV++DLPE
Sbjct: 121 MDVGALTPPLWGFEQREKLMIFYERACGARLHANYFRPGGVHQDLPE------------- 167
Query: 455 KATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSM 514
+L++ I +F + F +D+ +TL+T NRI+KQR V IGVV+ A +
Sbjct: 168 ------------NLIEDIGNFIDPFLIALDKLDTLITPNRIFKQRNVDIGVVNINEAWAR 215
Query: 515 GFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQ 574
GF+G M+RG+GV WDLRK QPYE Y+ + FDIP+GKN D YDRYL+R+EEMRQS KI++Q
Sbjct: 216 GFSGVMIRGAGVAWDLRKSQPYECYDEMEFDIPVGKNSDCYDRYLIRMEEMRQSTKIMRQ 275
Query: 575 CIKWLRSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEH 632
C+ L S++ GPV S ++K+ P R MK++ME LIHHFKL+TEGF+ P GE+Y VE
Sbjct: 276 CVNRLLSSEKNGPVSSLDHKVVPPKRSEMKNSMEALIHHFKLYTEGFHTPPGEVYVAVEA 335
Query: 633 PKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEID 692
PKGEFG+YLVSDG NKPYR+K+R+PGFAHLQ++ + GHM++D I+G+ DIVFGE+D
Sbjct: 336 PKGEFGVYLVSDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADAPAILGSIDIVFGEVD 395
Query: 693 R 693
R
Sbjct: 396 R 396
>gi|339504016|ref|YP_004691436.1| NADH-quinone oxidoreductase subunit NuoD [Roseobacter litoralis Och
149]
gi|338758009|gb|AEI94473.1| NADH-quinone oxidoreductase subunit NuoD [Roseobacter litoralis Och
149]
Length = 406
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 235/416 (56%), Positives = 304/416 (73%), Gaps = 26/416 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 16 KIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNLPY 75
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +AIEKL +++P RA IRV+F EI R+LNH++ I + ++D+G
Sbjct: 76 FDRLDYVAPMNQEHAWCLAIEKLTGVEVPRRASLIRVLFCEIGRILNHILNITTQAMDVG 135
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE SGAR+HAAY+RPGGV++DLP
Sbjct: 136 ALTPPLWGFEEREKLMVFYERASGARLHAAYFRPGGVHQDLPP----------------- 178
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L+D IE + + FP+ I + + LLT+NRI+KQR IGVV+ E L GF+G
Sbjct: 179 --------ELVDDIETWAHEFPRVIADIDGLLTENRIFKQRNADIGVVTEEDILEYGFSG 230
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG+ WDLR+ QPYE Y+ +F IP+GKNGD YDRYL R+EEMRQS II Q ++
Sbjct: 231 VMVRGSGLAWDLRRAQPYECYDEFDFQIPVGKNGDCYDRYLCRMEEMRQSLLIIHQAVEK 290
Query: 579 LRSNKGPV-ISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
LR+ +G + KIT P+R +MK++ME LIHHFKL+TEGF+VP GE+Y+CVE PKGEF
Sbjct: 291 LRAPEGQGDVLARGKITPPSRSDMKTSMESLIHHFKLYTEGFHVPAGEVYACVEAPKGEF 350
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLV+DG NKPYR KIR+PGF HLQ++ M GH ++DV IIGT D+VFGEIDR
Sbjct: 351 GVYLVADGTNKPYRAKIRAPGFLHLQAMDHMSRGHQLADVAAIIGTMDVVFGEIDR 406
>gi|402080746|gb|EJT75891.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 478
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 230/415 (55%), Positives = 296/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E +TYLQ+LPY
Sbjct: 91 KIRHYTVNFGPQHPAAHGVLRLILELSGEEIIRADPHVGLLHRGTEKLCEYKTYLQALPY 150
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLN++IP RA++IR +F EITR+LNHLM + SH++D+G
Sbjct: 151 FDRLDYVSMMTNEQCFALAVEKLLNVEIPERAKFIRTLFGEITRVLNHLMSVLSHAMDVG 210
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+H AY RPGGV++D+P
Sbjct: 211 ALTPFLWGFEEREKLMEFYERVSGARLHTAYVRPGGVHQDIP------------------ 252
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E +LTDNRIW RL G+GVVS AL++ FTG
Sbjct: 253 -------AGLLDDIYQWATQFGDRIDETEEMLTDNRIWINRLQGVGVVSAAEALNLSFTG 305
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK PY+ Y+ + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 306 VMLRGSGVPWDVRKSAPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNK 365
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + KI+ P R MK NME LIHHF L+T+G+ VP G+ YS +E PKGE G
Sbjct: 366 MPA--GPVRVEDYKISPPPRAAMKENMEALIHHFLLYTKGYAVPPGDTYSAIEAPKGEMG 423
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDG+ +PYR+ IR+PGFAHL + GH+++D V +IGT D+VFGE+DR
Sbjct: 424 VYVVSDGSERPYRVSIRAPGFAHLAGFDHVAKGHLLADAVAVIGTMDLVFGEVDR 478
>gi|374575847|ref|ZP_09648943.1| NADH dehydrogenase I, D subunit [Bradyrhizobium sp. WSM471]
gi|386402558|ref|ZP_10087336.1| NADH dehydrogenase I, D subunit [Bradyrhizobium sp. WSM1253]
gi|374424168|gb|EHR03701.1| NADH dehydrogenase I, D subunit [Bradyrhizobium sp. WSM471]
gi|385743184|gb|EIG63380.1| NADH dehydrogenase I, D subunit [Bradyrhizobium sp. WSM1253]
Length = 398
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 233/417 (55%), Positives = 309/417 (74%), Gaps = 27/417 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL EQ+TYLQ++PY
Sbjct: 7 QLRNFTINFGPQHPAAHGVLRLVLELDGEVVARVDPHIGLLHRGTEKLIEQKTYLQAIPY 66
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ MA EKLL I++P RAQ IRV++ EI R+L+HL+ + + ++D+G
Sbjct: 67 FDRLDYVAPMNQEHAFCMAAEKLLGIEVPRRAQLIRVLYCEIGRILSHLLNVTTQAMDVG 126
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE SG+RMHAAY+R GGV++DLP+
Sbjct: 127 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRVGGVHQDLPQ----------------- 169
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L+D I+ + + F K +++ + LLT NRI+KQR V IGVVS + A GF+G
Sbjct: 170 --------KLVDDIDAWCDPFLKVVEDLDRLLTANRIFKQRNVDIGVVSLKEAWEWGFSG 221
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG WDLRK QPYE Y ++FDIPIGKNGD YDRYL+R+EEMRQS +I+KQCI+
Sbjct: 222 VMVRGSGAAWDLRKSQPYECYAEMDFDIPIGKNGDCYDRYLIRMEEMRQSVRIMKQCIQK 281
Query: 579 LRS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
L + KGPV+ +NK+ P R MK +ME LIHHFKL+TEG +VP GE+Y+ VE PKGE
Sbjct: 282 LNAADGKGPVVVEDNKVAPPRRGEMKRSMEALIHHFKLYTEGVHVPAGEVYAAVEAPKGE 341
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG++L+SDG NKPY+ KIR+PGFAHLQ++ + GH+++DV I+G+ DIVFGE+DR
Sbjct: 342 FGVFLISDGTNKPYKCKIRAPGFAHLQAMDHICRGHLLADVSAILGSLDIVFGEVDR 398
>gi|226467736|emb|CAX69744.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2 [Schistosoma
japonicum]
Length = 460
Score = 487 bits (1253), Expect = e-134, Method: Compositional matrix adjust.
Identities = 233/415 (56%), Positives = 297/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
E++S LNFGPQHPAAHGVLRLI+EL+GE + + DPHIGLLHR TEKL E +TY Q+LPY
Sbjct: 73 EVQSVHLNFGPQHPAAHGVLRLIMELDGESIIRLDPHIGLLHRGTEKLIEYKTYTQALPY 132
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDY SMMCNE Y +A+EKLLNI++P RA+YIR +F EITR++NH + +GS LDIG
Sbjct: 133 FDRLDYASMMCNEQCYALAVEKLLNIEVPPRAKYIRTLFAEITRIMNHCLAVGSTILDIG 192
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+ + + F ERE + + YE VSGARMHAAY RPGGVY D+P
Sbjct: 193 VITPIFWLFEEREKMFEFYERVSGARMHAAYIRPGGVYLDMPL----------------- 235
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L+D I F +FP+ +DE LL DN IW R +GVVS E AL +GF+G
Sbjct: 236 --------GLMDDIYRFIQKFPQRLDEISDLLLDNPIWITRTKDVGVVSAEDALDLGFSG 287
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+KWDLRK QPY+ Y ++FD+PIG +GD YDR+++R+EEMRQS +II+QC+
Sbjct: 288 VMLRGSGIKWDLRKTQPYDAYADMDFDVPIGVHGDCYDRFMIRMEEMRQSLRIIEQCLN- 346
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ KG + ++ KI P R MK +ME LIHHFKLF+EG+ VP G Y+ +E PKGEFG
Sbjct: 347 -KMPKGEIRVDDAKICPPKRAEMKHSMEALIHHFKLFSEGYLVPPGSTYTAIEAPKGEFG 405
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG NKPYR KI++PGF+HL ++ +M G +I+DVV +IGT DIVFGE+DR
Sbjct: 406 VYLVSDGTNKPYRCKIKAPGFSHLAAIDKMCRGFLIADVVAVIGTLDIVFGEVDR 460
>gi|209885055|ref|YP_002288912.1| NADH dehydrogenase subunit D [Oligotropha carboxidovorans OM5]
gi|337741315|ref|YP_004633043.1| NADH-quinone oxidoreductase subunit D [Oligotropha carboxidovorans
OM5]
gi|386030331|ref|YP_005951106.1| NADH-quinone oxidoreductase subunit D [Oligotropha carboxidovorans
OM4]
gi|229891292|sp|B6JGW3.1|NUOD_OLICO RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|209873251|gb|ACI93047.1| d subunit of NADH dehydrogenase (quinone) [Oligotropha
carboxidovorans OM5]
gi|336095399|gb|AEI03225.1| NADH-quinone oxidoreductase subunit D [Oligotropha carboxidovorans
OM4]
gi|336098979|gb|AEI06802.1| NADH-quinone oxidoreductase subunit D [Oligotropha carboxidovorans
OM5]
Length = 405
Score = 487 bits (1253), Expect = e-134, Method: Compositional matrix adjust.
Identities = 233/415 (56%), Positives = 306/415 (73%), Gaps = 27/415 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
+++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL EQ+TYLQ++PY D
Sbjct: 16 RNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEQKTYLQAIPYFD 75
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYV+ M EHA+ +A EKLL I +P R Q IRV++ EI R+L+HL+ I + +LD+GA+
Sbjct: 76 RLDYVAPMNQEHAFCLAAEKLLGITVPRRGQLIRVLYSEIGRILSHLLNITTQALDVGAL 135
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
L+ F ERE L+ YE SG+RMHAA++R GGV++DLP
Sbjct: 136 TPPLWGFEEREKLMMFYERASGSRMHAAFFRIGGVHQDLPP------------------- 176
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
L+ I+ + + FP+ +D+ E LLTDNRI+KQR V IGVV+ ++A GF+G M
Sbjct: 177 ------KLIGDIDIWCDAFPEKLDDLEILLTDNRIFKQRNVDIGVVTLDQAWEWGFSGVM 230
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
+RGSG WDLR+ QPYE Y+ + FDIPIGKNGD YDRY +R+EEMRQS +I+KQCI +R
Sbjct: 231 VRGSGAAWDLRRAQPYECYDEMEFDIPIGKNGDCYDRYCIRVEEMRQSVRIMKQCIAKMR 290
Query: 581 S--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ +GPV+ +NKIT P R MK +ME LIHHFKL+TEG +VP GE+Y+ VE PKGEFG
Sbjct: 291 APDGQGPVVIEDNKITPPRRGEMKRSMEALIHHFKLYTEGVHVPPGEVYAAVEAPKGEFG 350
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLV+DG NKPY+ KIR+PGFAHLQ++ + GH+++DV I+G+ DIVFGE+DR
Sbjct: 351 VYLVADGTNKPYKCKIRAPGFAHLQAMDFICKGHLLADVSAILGSLDIVFGEVDR 405
>gi|154253662|ref|YP_001414486.1| NADH dehydrogenase I subunit D [Parvibaculum lavamentivorans DS-1]
gi|218534437|sp|A7HY46.1|NUOD_PARL1 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|154157612|gb|ABS64829.1| NADH dehydrogenase I, D subunit [Parvibaculum lavamentivorans DS-1]
Length = 392
Score = 487 bits (1253), Expect = e-134, Method: Compositional matrix adjust.
Identities = 234/415 (56%), Positives = 307/415 (73%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
E+++Y LNFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TYLQ+ PY
Sbjct: 5 ELRNYHLNFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEYKTYLQATPY 64
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+V+A E+LL +++P RAQ+IRV++ EI R+L HL+ + + ++D+G
Sbjct: 65 FDRLDYVAPMNQEHAFVLAAERLLGLEVPRRAQFIRVLYSEIGRILAHLLNVTTQAMDVG 124
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE SGAR+HA Y+R GGV+RDLP
Sbjct: 125 ALTPPLWGFEEREKLMIFYERASGARLHANYFRTGGVHRDLPP----------------- 167
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LL+ I +F + + +D+ E L+TDNRI+KQR V IGVVS E AL GF+G
Sbjct: 168 --------KLLEDIYNFCDPCSQVLDDLEGLITDNRIFKQRNVDIGVVSQEEALEWGFSG 219
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG+ WDLR+ QPYE+Y+ L+FDIP+GKNGD YDRYL R+EEMRQS +I+KQCI+
Sbjct: 220 VMVRGSGMAWDLRRAQPYEVYSELDFDIPVGKNGDCYDRYLCRMEEMRQSLRIMKQCIEL 279
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ GPV + K+ P+R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGEFG
Sbjct: 280 MPG--GPVHVLDGKVVPPSRSEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEFG 337
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG NKPY+ KIR+PG+AHLQ++ + GHM++DV I+G+ DIVFGE+DR
Sbjct: 338 VYLVSDGGNKPYKCKIRAPGYAHLQAMDHLCKGHMLADVSAILGSIDIVFGEVDR 392
>gi|383312429|ref|YP_005365230.1| NADH dehydrogenase subunit D [Candidatus Rickettsia amblyommii str.
GAT-30V]
gi|378931089|gb|AFC69598.1| NADH dehydrogenase subunit D [Candidatus Rickettsia amblyommii str.
GAT-30V]
Length = 391
Score = 487 bits (1253), Expect = e-134, Method: Compositional matrix adjust.
Identities = 233/406 (57%), Positives = 295/406 (72%), Gaps = 27/406 (6%)
Query: 288 GPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSM 347
GPQHPA HGVLRLILE++GEVV A PHIGLLHR TEKL E +TYLQ++PY DRLDYVS
Sbjct: 13 GPQHPATHGVLRLILEMDGEVVNNAAPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSP 72
Query: 348 MCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLLYAF 407
MC EHA+ +A+E LL ++P RAQ+IRV+F E+TR+LNH + IGS +LDIGA LL+ F
Sbjct: 73 MCQEHAFALAVESLLECEVPRRAQFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLF 132
Query: 408 REREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENRQGS 467
ERE +++ YE VSG+RMH+ Y+RPGGV DLPE
Sbjct: 133 EEREKIMEFYEHVSGSRMHSNYFRPGGVAADLPE-------------------------G 167
Query: 468 LLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGSGVK 527
LL+ I+ F +FP + + E+LL +NR+WKQRLV IGV S + A+ GF+GPMLRGSG+
Sbjct: 168 LLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVASQKEAMDWGFSGPMLRGSGIA 227
Query: 528 WDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKGPVI 587
WDLRK PY++Y+ ++F +PIGKNGD YDRY VR+ EM +S KIIKQCI+ + KG V
Sbjct: 228 WDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESVKIIKQCIE--KMPKGAVK 285
Query: 588 SNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGAN 647
+++ K+T P R MK +ME +IHHFKL+TEG+ VP GE Y VE PKGEFG+YL S G N
Sbjct: 286 TDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGEFGVYLYSQGGN 345
Query: 648 KPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+PYR +I++PGFAHLQ L M GH+++DV+TII T DIVFGEIDR
Sbjct: 346 RPYRCRIKAPGFAHLQGLDFMSKGHLMADVITIIATLDIVFGEIDR 391
>gi|254500691|ref|ZP_05112842.1| NADH dehydrogenase (quinone), D subunit [Labrenzia alexandrii
DFL-11]
gi|222436762|gb|EEE43441.1| NADH dehydrogenase (quinone), D subunit [Labrenzia alexandrii
DFL-11]
Length = 394
Score = 487 bits (1253), Expect = e-134, Method: Compositional matrix adjust.
Identities = 229/415 (55%), Positives = 305/415 (73%), Gaps = 25/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL EQ+TYLQ++PY
Sbjct: 5 QVRNFNINFGPQHPAAHGVLRLVLELDGEVVTRVDPHIGLLHRGTEKLIEQKTYLQAIPY 64
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +A+E++L I++P R Q +RV++ EI R+L+HL+ + + ++D+G
Sbjct: 65 FDRLDYVAPMNQEHAFALAVERMLGIEVPKRGQLVRVLYSEIGRILSHLLNVTTQAMDVG 124
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F RE+L+ YE GARMHAAY RPGGV++DLP
Sbjct: 125 ALTPPLWGFEPREELMVFYERACGARMHAAYVRPGGVHQDLPR----------------- 167
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I DF + F + +D+ E LLTDNRI+KQR V IGVV + A + GF+G
Sbjct: 168 --------DLLDDIWDFCDPFLQTLDDIEGLLTDNRIFKQRNVDIGVVDLDDAWAWGFSG 219
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG WDLRK QPYE Y+ L+FDIPIGKNGD YDRYL+R++EMRQS +I+KQC++
Sbjct: 220 VMVRGSGAPWDLRKSQPYECYSELDFDIPIGKNGDCYDRYLIRMDEMRQSIRIMKQCLEK 279
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L GPV S + KI P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGEFG
Sbjct: 280 LTVETGPVSSADGKIVPPKRGEMKRSMESLIHHFKLYTEGYHVPPGEVYAAVEAPKGEFG 339
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLV+DG NKPYR KI++PG+AHL ++ + GH ++DV ++G+ DIVFGE+DR
Sbjct: 340 VYLVADGTNKPYRCKIKAPGYAHLSAMDFVCRGHQLADVSAVLGSMDIVFGEVDR 394
>gi|421598889|ref|ZP_16042215.1| NADH dehydrogenase subunit D [Bradyrhizobium sp. CCGE-LA001]
gi|404268997|gb|EJZ33351.1| NADH dehydrogenase subunit D [Bradyrhizobium sp. CCGE-LA001]
Length = 398
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 234/417 (56%), Positives = 307/417 (73%), Gaps = 27/417 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL EQ+TYLQ++PY
Sbjct: 7 QLRNFTINFGPQHPAAHGVLRLVLELDGEVVARVDPHIGLLHRGTEKLIEQKTYLQAIPY 66
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +A EKLL I++P R Q IRV++ EI R+L+HL+ + + ++D+G
Sbjct: 67 FDRLDYVAPMNQEHAFCLAAEKLLGIEVPRRGQLIRVLYCEIGRILSHLLNVTTQAMDVG 126
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE SG+RMHAAY+R GGV++DLP+
Sbjct: 127 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRVGGVHQDLPQ----------------- 169
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L+D IE + + F K +D+ + LLT NRI+KQR V IGVV + A GF+G
Sbjct: 170 --------KLVDDIEAWCDPFLKVVDDLDRLLTANRIFKQRNVDIGVVPLKEAWEWGFSG 221
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG WDLRK QPYE Y ++FDIPIGKNGD YDRYL+R+EEMRQS +I+KQCI+
Sbjct: 222 VMVRGSGAAWDLRKSQPYECYAEMDFDIPIGKNGDCYDRYLIRMEEMRQSVRIMKQCIQK 281
Query: 579 LRS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
L + KGPV+ +NK+ P R MK +ME LIHHFKL+TEG +VP GE+Y+ VE PKGE
Sbjct: 282 LNAPDGKGPVVVEDNKVAPPRRGEMKRSMEALIHHFKLYTEGVHVPAGEVYAAVEAPKGE 341
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YLVSDG NKPY+ KIR+PGFAHLQ++ + GH+++DV I+G+ DIVFGE+DR
Sbjct: 342 FGVYLVSDGTNKPYKCKIRAPGFAHLQAMDHICRGHLLADVSAILGSLDIVFGEVDR 398
>gi|452836264|gb|EME38208.1| hypothetical protein DOTSEDRAFT_75700 [Dothistroma septosporum
NZE10]
Length = 486
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 240/459 (52%), Positives = 310/459 (67%), Gaps = 41/459 (8%)
Query: 248 GIFFDGHDDLRRLLTDYGFVGHPFRKDFPVI-------------EIKSYKLNFGPQHPAA 294
G F H R + D F GHP D + +I+ Y +NFGPQHPAA
Sbjct: 56 GGSFPAHGGTRLIPVDPSF-GHPVNPDKTAMNMPNEDAATPDERKIRHYTVNFGPQHPAA 114
Query: 295 HGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAY 354
HGVLRLILEL GE + +ADPH+GLLHR TEKL E +TYLQ+LPY DRLDYVSMM NE +
Sbjct: 115 HGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMTNEQCF 174
Query: 355 VMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLLYAFREREDLL 414
+A+EKLLNI++P RA++IR +F EITR+LNHLM + SH++D+GA+ L+ F ERE L+
Sbjct: 175 SLAVEKLLNIEVPERAKWIRTLFGEITRVLNHLMSVLSHAMDVGALTPFLWGFEEREKLM 234
Query: 415 DCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENRQGSLLDFIED 474
+ YE VSGAR+HAAY RPGGV +DLP LLD I
Sbjct: 235 EFYERVSGARLHAAYVRPGGVSQDLPV-------------------------GLLDDIYQ 269
Query: 475 FTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGSGVKWDLRKKQ 534
+ +F IDE E +LTDNRIW R G+GVV+ AL+M F+G MLRGSG+ WD+RK Q
Sbjct: 270 WATQFGDRIDETEEMLTDNRIWIGRTKGVGVVNAADALNMSFSGVMLRGSGIPWDVRKSQ 329
Query: 535 PYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKGPVISNNNKIT 594
PY+ Y+ + FD+P+G+NGD YDRYL R+EE RQS +I+ QC+ + + GP+ + KI+
Sbjct: 330 PYDAYDQVEFDVPVGQNGDCYDRYLCRMEEFRQSLRIMHQCLNKMPA--GPIKVEDYKIS 387
Query: 595 SPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKPYRIKI 654
P R MK NME LIHHF L+++G+ VP GE YS +E PKGE G+Y+VSDG+ +PYR KI
Sbjct: 388 PPPRAAMKENMEALIHHFLLYSKGYTVPPGETYSAIEAPKGEMGVYVVSDGSERPYRCKI 447
Query: 655 RSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
R+PGFAHL ++ GH+++D V IIGT D+VFGE+DR
Sbjct: 448 RAPGFAHLACFDQVSRGHLLADAVAIIGTMDLVFGEVDR 486
>gi|169603301|ref|XP_001795072.1| hypothetical protein SNOG_04659 [Phaeosphaeria nodorum SN15]
gi|111067299|gb|EAT88419.1| hypothetical protein SNOG_04659 [Phaeosphaeria nodorum SN15]
Length = 477
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 236/415 (56%), Positives = 296/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E RTYLQ+LPY
Sbjct: 90 KIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYRTYLQALPY 149
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLNI+IP RA+YIR MF EITR+LNHLM + SH++D+G
Sbjct: 150 FDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKYIRTMFGEITRILNHLMSVLSHAMDVG 209
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV +DLP
Sbjct: 210 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDLPI----------------- 252
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E +LTDNRIW R G+GVVS A++ F+G
Sbjct: 253 --------GLLDDIYQWATQFGDRIDETEEMLTDNRIWIGRTKGVGVVSAADAINYSFSG 304
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y+ + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 305 VMLRGSGVPWDVRKSQPYDAYDKVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNQ 364
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + KI P R MK NME LIHHF LF++G+ VP GE YS +E PKGE G
Sbjct: 365 MPA--GPVKVEDYKIAPPPRAAMKENMEALIHHFLLFSKGYTVPPGETYSAIEAPKGEMG 422
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+++VSDG+ +PYR KIR+PGFAHL + ++ GH+++D V IIGT D+VFGE+DR
Sbjct: 423 VFVVSDGSERPYRCKIRAPGFAHLACMDQISRGHLLADAVAIIGTMDLVFGEVDR 477
>gi|341615278|ref|ZP_08702147.1| NADH dehydrogenase subunit D [Citromicrobium sp. JLT1363]
Length = 413
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 225/415 (54%), Positives = 303/415 (73%), Gaps = 26/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI +Y +NFGPQHPAAHGVLR+++EL+GE+V + DPH+GLLHR TEKL E +TYLQ+LPY
Sbjct: 25 EITNYTINFGPQHPAAHGVLRMVMELDGEIVERVDPHVGLLHRGTEKLIEHKTYLQALPY 84
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDY S +C EH+YV+AIEKLLN+++PIRAQY+RV+F E+TR+ NH + IG+H +D+G
Sbjct: 85 FDRLDYCSPLCQEHSYVLAIEKLLNLEVPIRAQYLRVLFAELTRMSNHFLNIGAHVMDVG 144
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM L+ F RED ++ +E SGARMH+A++RPGGV++D+PE +
Sbjct: 145 AMTPNLWVFELREDCMNFFERASGARMHSAWFRPGGVHQDVPEKL--------------- 189
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L+D E NR P+ + +L+ DNRI+KQR V I VVS E A+ GF+G
Sbjct: 190 ---------LVDIGEWLDNRVPELFGDAMSLVMDNRIFKQRNVDIAVVSREDAIKWGFSG 240
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
P++R +GV WDLRK QPY++Y+ ++F+IP+G N D YDR++VR++E+ QS KIIKQC+
Sbjct: 241 PLIRAAGVPWDLRKSQPYDVYDRMDFEIPVGTNSDCYDRFMVRVQEVYQSAKIIKQCLAE 300
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ S GP+ S++ K++ P R MK +ME LIHHFKL+TEGF+VP GE+Y E PKGEFG
Sbjct: 301 MPS--GPIASDDRKVSPPKRGEMKQSMEALIHHFKLYTEGFHVPAGEVYVATESPKGEFG 358
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG+NKPYR KIR F+HLQ++ M GHM+ D I+G D+VFGE DR
Sbjct: 359 VYLVSDGSNKPYRCKIRPTAFSHLQAMDMMTKGHMLPDATAILGAIDVVFGECDR 413
>gi|266654|sp|P29916.1|NQO4_PARDE RecName: Full=NADH-quinone oxidoreductase subunit 4; AltName:
Full=NADH dehydrogenase I, subunit 4; AltName:
Full=NDH-1, subunit 4
gi|150623|gb|AAA03038.1| NADH dehydrogenase [Paracoccus denitrificans]
Length = 412
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 231/414 (55%), Positives = 302/414 (72%), Gaps = 25/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
I+++ +NFGPQHPAAHG+LR++LEL+GE+V +ADPHIGLLHR TEKL E RTYLQ+LPY+
Sbjct: 24 IRNFNINFGPQHPAAHGLLRMVLELDGEIVERADPHIGLLHRGTEKLMESRTYLQNLPYL 83
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +AIE+L IP RA IRV++ EI R+LNHLM + + ++D+GA
Sbjct: 84 DRLDYVAPMNQEHAWCLAIERLTGTVIPRRASLIRVLYSEIGRILNHLMGVTTGAMDVGA 143
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F RE+L+ YE GAR+HAAY+RPGGV++DLP
Sbjct: 144 LTPPLWGFEAREELMIFYERACGARLHAAYFRPGGVHQDLPP------------------ 185
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD IE++ RFPK +D+ +TLLT+NRI+KQRLV IG+V+ AL G+TG
Sbjct: 186 -------DLLDDIEEWCERFPKLVDDLDTLLTENRIFKQRLVDIGIVTEADALDWGYTGV 238
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG+ WDLR+ QPYE Y+ +F IP+G+NGD YDRYL R+ EMR+S KI++Q ++ L
Sbjct: 239 MVRGSGLAWDLRRSQPYECYDEFDFQIPVGRNGDCYDRYLCRMAEMRESCKIMQQAVQKL 298
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
R+ + K+T P R MK +ME LIHHFKL+TEGF VP GE+Y+ VE PKGEFG+
Sbjct: 299 RAEPAGDVLARGKLTPPRRAEMKRDMESLIHHFKLYTEGFKVPAGEVYAAVEGPKGEFGV 358
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLV+DG NKP+R K+R+PGFAHLQS+ M GHM++DV II T DIVFGE+DR
Sbjct: 359 YLVADGTNKPWRAKLRAPGFAHLQSIDWMSRGHMLADVPAIIATLDIVFGEVDR 412
>gi|302923307|ref|XP_003053647.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256734588|gb|EEU47934.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 468
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 231/415 (55%), Positives = 297/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E +TYLQ+LPY
Sbjct: 81 KVRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYLQALPY 140
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLNI+IP RA++IR +F EITR+LNHLM + SH++D+G
Sbjct: 141 FDRLDYVSMMTNEQCFALAVEKLLNIEIPERAKFIRTLFGEITRVLNHLMSVLSHAMDVG 200
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV++D+P
Sbjct: 201 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPV----------------- 243
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E +LTDNRIW +RL G+GVV AL++ FTG
Sbjct: 244 --------GLLDDIYQWATQFGDRIDETEEMLTDNRIWIERLRGVGVVPASEALNLSFTG 295
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y+ + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 296 VMLRGSGVPWDIRKSQPYDAYDQVEFDVPVGTNGDCYDRYLCRMEEFRQSLRIIHQCLNK 355
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + K++ P R MK NME LIHHF L+T+G+ VP GE YS +E PKGE G
Sbjct: 356 MPA--GPVRVEDYKVSPPPRSAMKENMEALIHHFLLYTKGYAVPPGETYSAIEAPKGEMG 413
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDG+ +PYR IR+PGFAHL + GH+++D V +IGT D+VFGE+DR
Sbjct: 414 VYVVSDGSERPYRCHIRAPGFAHLGGFDHVSKGHLLADAVAVIGTMDLVFGEVDR 468
>gi|86357240|ref|YP_469132.1| NADH dehydrogenase subunit D [Rhizobium etli CFN 42]
gi|123512311|sp|Q2K9T1.1|NUOD1_RHIEC RecName: Full=NADH-quinone oxidoreductase subunit D 1; AltName:
Full=NADH dehydrogenase I subunit D 1; AltName:
Full=NDH-1 subunit D 1
gi|86281342|gb|ABC90405.1| NADH-ubiquinone oxidoreductase chain D protein [Rhizobium etli CFN
42]
Length = 396
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 234/416 (56%), Positives = 306/416 (73%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 6 VRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHAY +A+EKLL I+IPIR Q IRV++ EI R+L+HL+ + + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAYALAVEKLLGIQIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHAAY+RPGGV++DLPE
Sbjct: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDLPE------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+ I D+ + F K +D+ + LLT NRI+KQR V IGVVS E + GF+G
Sbjct: 168 -------KLVQDIGDWCDPFLKALDDIDDLLTGNRIFKQRNVDIGVVSLEDCWAWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLR+ QPYE Y+ L FDIPIGKNGD+YDRYL+R+ EMRQS +I+KQC+ L
Sbjct: 221 MVRGSGAAWDLRRAQPYECYSDLEFDIPIGKNGDNYDRYLIRMIEMRQSVRIMKQCVNRL 280
Query: 580 RSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
S+ GP S + K+ P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGEF
Sbjct: 281 LSDARTGPFSSIDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYTAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG+NKPYR KIR+PG+AHLQ++ M GH ++DV ++G+ DIVFGE+DR
Sbjct: 341 GVYLVSDGSNKPYRCKIRAPGYAHLQAMDFMCRGHQLADVAAVLGSLDIVFGEVDR 396
>gi|407974324|ref|ZP_11155233.1| NADH dehydrogenase subunit D [Nitratireductor indicus C115]
gi|407430013|gb|EKF42688.1| NADH dehydrogenase subunit D [Nitratireductor indicus C115]
Length = 396
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 230/421 (54%), Positives = 307/421 (72%), Gaps = 27/421 (6%)
Query: 275 FPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQ 334
P ++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL EQ+TYLQ
Sbjct: 1 MPETSVRNFNINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEQKTYLQ 60
Query: 335 SLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHS 394
++PY DRLDYV+ M EHA+ + +E+L+ I +P R Q IRV++ EI R+LNHL+ + + +
Sbjct: 61 AVPYFDRLDYVAPMNQEHAFALGVERLIGIDVPRRGQLIRVLYSEIGRILNHLLNVTTQA 120
Query: 395 LDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNN 454
+D+GA+ L+ F ERE L+ YE GARMHAAY+RPGGV++DLPE
Sbjct: 121 MDVGALTPPLWGFEEREKLMVFYERACGARMHAAYFRPGGVHQDLPE------------- 167
Query: 455 KATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSM 514
L++ I ++ + F K +D + LLT NRI+KQR V IGVV+ E A +
Sbjct: 168 ------------KLIEDIGNWIDPFFKTLDNLDNLLTGNRIFKQRNVDIGVVTLEEAWAW 215
Query: 515 GFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQ 574
GF+G M+RGSG WDLRK QPYE Y ++FDIP+GKNGD YDRYL+R+EEMRQS KI++Q
Sbjct: 216 GFSGVMVRGSGAAWDLRKSQPYECYPEMDFDIPVGKNGDCYDRYLIRMEEMRQSAKIMRQ 275
Query: 575 CIKWL--RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEH 632
C++ L + GPV + + K+ P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE
Sbjct: 276 CVELLLGKDRVGPVSNMDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPEGEVYAAVEA 335
Query: 633 PKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEID 692
PKGEFG+YLVSDG+NKPYR K+R+PGFAHLQ++ + GH+++DV I+G+ DIVFGE+D
Sbjct: 336 PKGEFGVYLVSDGSNKPYRCKLRAPGFAHLQAMDFLCRGHLLADVAAILGSLDIVFGEVD 395
Query: 693 R 693
R
Sbjct: 396 R 396
>gi|380014344|ref|XP_003691195.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial-like [Apis florea]
Length = 478
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 233/415 (56%), Positives = 302/415 (72%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
E ++ +NFGPQHPAAHGVLRL++E+ E V +ADPHIGLLHR TEKL E +TY+Q+LPY
Sbjct: 91 EFRNVVINFGPQHPAAHGVLRLLIEMNSEYVTRADPHIGLLHRGTEKLVEYKTYMQALPY 150
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMMCNE + MAIEKLLNI IP+RA+YIR +F EITR+LNH+M IG+H+LDIG
Sbjct: 151 FDRLDYVSMMCNEQCFSMAIEKLLNIDIPLRAKYIRTLFAEITRILNHIMNIGTHALDIG 210
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ + F ERE L++ YE VSGARMHAAY RPGGV D+P
Sbjct: 211 ALTPFFWLFEEREKLMEFYERVSGARMHAAYIRPGGVSLDMPL----------------- 253
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L+D I ++ ++F +DE E LLT+NR+W R +G+V+ E+A+ GF+G
Sbjct: 254 --------GLMDDIYEWASKFAFRLDEVEDLLTENRVWTGRTKDVGIVTAEQAIEWGFSG 305
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG++WD+RKK PY+ Y+L+ FD+PIG GD YDRYL R+EEMRQS +II QC+
Sbjct: 306 VMLRGSGIQWDIRKKTPYDAYDLVEFDVPIGLKGDCYDRYLCRMEEMRQSLRIIYQCLNQ 365
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ +G V ++ KI P R MK++ME LIHHFKL+T+GF VP G Y+ +E PKGEFG
Sbjct: 366 M--PEGEVRIDDAKIVPPRREEMKTSMEALIHHFKLYTQGFQVPPGSTYTAIEAPKGEFG 423
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG++KPYR KI++PGFAHL ++ M G +++D+V IIGT D+VFGEIDR
Sbjct: 424 VYLVSDGSSKPYRCKIKAPGFAHLAAMRHMGPGCLLADIVAIIGTLDVVFGEIDR 478
>gi|395334717|gb|EJF67093.1| NADH-ubiquinone oxidoreductase [Dichomitus squalens LYAD-421 SS1]
Length = 475
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 233/418 (55%), Positives = 299/418 (71%), Gaps = 27/418 (6%)
Query: 276 PVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQS 335
P +++ + +NFGPQHPAAHGVLRLILEL GE V +ADPH+GLLHR TEKL E +TY Q+
Sbjct: 85 PETQLRHFTVNFGPQHPAAHGVLRLILELNGEEVLRADPHVGLLHRGTEKLIEYKTYTQA 144
Query: 336 LPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSL 395
LPY DRLDYVSMM NE Y +A+EKLLNI++P RA++IR +F EITR+LNHLM + SH++
Sbjct: 145 LPYFDRLDYVSMMTNELCYSLAVEKLLNIEVPERAKWIRTLFGEITRILNHLMAVLSHAM 204
Query: 396 DIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNK 455
D+GA+ L+ F ERE L++ YE VSGAR+HAAY RPGGV DLP
Sbjct: 205 DVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVAFDLPH-------------- 250
Query: 456 ATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMG 515
LL+ I + +F +DE E ++T NRIWK+R +GIGVV+ ++AL
Sbjct: 251 -----------GLLEDIFKWATQFSSRVDEIEEVVTGNRIWKERTIGIGVVTAKQALDYS 299
Query: 516 FTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQC 575
F+G MLRGSGV WD+RK PY+ Y+ + FD+P+GKNGD YDRYL R++E R+S +II QC
Sbjct: 300 FSGVMLRGSGVPWDIRKVAPYDKYDEVEFDVPVGKNGDCYDRYLCRVQEFRESLRIISQC 359
Query: 576 IKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
+ + + G V ++ K+ P R +MK +ME LIHHFKLF+EG+ VP GE YS +E PKG
Sbjct: 360 LNKIPT--GAVKVDDYKLVPPPRASMKESMESLIHHFKLFSEGYSVPPGETYSAIEAPKG 417
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
E G+YLVSDG N+PYR KIR+PGFAHL M+ HMI+DVV IIGT D+VFGE+DR
Sbjct: 418 EMGVYLVSDGTNRPYRCKIRAPGFAHLAGADFMMRRHMIADVVAIIGTMDLVFGEVDR 475
>gi|449299412|gb|EMC95426.1| hypothetical protein BAUCODRAFT_123871 [Baudoinia compniacensis
UAMH 10762]
Length = 473
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 238/415 (57%), Positives = 294/415 (70%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E RTYLQ+LPY
Sbjct: 86 KIRHYTVNFGPQHPAAHGVLRLILELSGEEIVRADPHVGLLHRGTEKLIEYRTYLQALPY 145
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLNI+IP RA++IR +F EITR+LNHLM I SH++D+G
Sbjct: 146 FDRLDYVSMMTNEQCFSLAVEKLLNIEIPDRAKWIRTLFGEITRILNHLMSILSHAMDVG 205
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV +DLP
Sbjct: 206 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVAQDLPM----------------- 248
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E LLTDNRIW R GIGVVS AL+ FTG
Sbjct: 249 --------GLLDDIYQWATQFGDRIDETEELLTDNRIWIGRTKGIGVVSAADALNYSFTG 300
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y ++FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 301 VMLRGSGVPWDVRKSQPYDAYGEVDFDVPVGVNGDCYDRYLCRMEEFRQSLRIIYQCLN- 359
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ GP+ + KI P R MK NME LIHHF LF++G+ VP GE YS +E PKGE G
Sbjct: 360 -KMPPGPIKVEDYKIAPPPRAAMKENMEALIHHFLLFSKGYTVPPGETYSAIEAPKGEMG 418
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+++VSDG+ +PYR KIR+PGFAHL ++ GH+++D V IIGT D+VFGE+DR
Sbjct: 419 VFVVSDGSERPYRCKIRAPGFAHLSCFDQISRGHLLADAVAIIGTMDLVFGEVDR 473
>gi|424914555|ref|ZP_18337919.1| NADH dehydrogenase I, D subunit [Rhizobium leguminosarum bv.
trifolii WSM597]
gi|392850731|gb|EJB03252.1| NADH dehydrogenase I, D subunit [Rhizobium leguminosarum bv.
trifolii WSM597]
Length = 396
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 235/416 (56%), Positives = 304/416 (73%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 6 VRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHAY MA+EKLL I IPIR Q IRV++ EI R+L+HL+ + + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAYAMAVEKLLGIDIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHAAY RPGGV++DLPE
Sbjct: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYVRPGGVHQDLPE------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+ I D+ + F K +D+ + LLT NRI+KQR V IGVVS E + GF+G
Sbjct: 168 -------QLVQDIGDWCDPFLKALDDIDNLLTGNRIFKQRNVDIGVVSLEDCWAWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLR+ QPYE Y+ L FDIPIGKNGD+YDRYL+R+ EMRQS +I+KQC+ L
Sbjct: 221 MVRGSGAAWDLRRSQPYECYSDLEFDIPIGKNGDNYDRYLIRMIEMRQSVRIMKQCVNRL 280
Query: 580 RSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
S+ GP S + K+ P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGEF
Sbjct: 281 LSDAKTGPFSSIDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG+NKPYR KIR+PG+AHLQ++ M GH ++DV ++G+ DIVFGE+DR
Sbjct: 341 GVYLVSDGSNKPYRCKIRAPGYAHLQAMDFMCRGHQLADVAAVLGSLDIVFGEVDR 396
>gi|320582439|gb|EFW96656.1| NADH-ubiquinone oxidoreductase subunit, mitochondrial precursor
[Ogataea parapolymorpha DL-1]
Length = 499
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 237/422 (56%), Positives = 303/422 (71%), Gaps = 29/422 (6%)
Query: 274 DFPVIE--IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRT 331
DFPV + I+ + LNFGPQHPAAHGVLRLILEL GE + ++DPH+GLLHR TEKL E +T
Sbjct: 105 DFPVRKNKIRHFTLNFGPQHPAAHGVLRLILELHGEEIVRSDPHVGLLHRGTEKLIESKT 164
Query: 332 YLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIG 391
Y+Q+LPY DRLDYVSMM NE + +A+EKLLNI++PIRA+YIR MF EITR+LNHLM +
Sbjct: 165 YIQALPYFDRLDYVSMMTNEQVFSLAVEKLLNIEVPIRAKYIRTMFGEITRILNHLMSVL 224
Query: 392 SHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSII 451
SH++D+GA+ L+ F ERE L++ YE VSGAR+HAAY RPGGV +DLP
Sbjct: 225 SHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDLP----------- 273
Query: 452 RNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERA 511
LLD I + +F IDE E LLTDNRIWKQR V IG V+ E A
Sbjct: 274 --------------FGLLDDIYMWATQFGDRIDETEELLTDNRIWKQRTVDIGTVTAEDA 319
Query: 512 LSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKI 571
L+ G +G MLRGSGV +D+RK QPY+ Y ++FD+P+G GD YDRYL+R+ E RQS +I
Sbjct: 320 LNYGLSGVMLRGSGVPFDIRKSQPYDAYEYVDFDVPVGTRGDCYDRYLIRMAEFRQSLRI 379
Query: 572 IKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVE 631
I+QCI + + GPV + KI PA+ MK++ME LIHHF +FT+G+ VP GE Y+ +E
Sbjct: 380 IEQCINDMPA--GPVKVEDFKIAPPAKSLMKTDMEALIHHFLVFTKGYQVPPGETYTVIE 437
Query: 632 HPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEI 691
PKGE G+Y+VSDG+ +PYR KIR+PGF+HL + + GH++ D V IIGT D+VFGE+
Sbjct: 438 APKGEMGVYVVSDGSERPYRCKIRAPGFSHLAAFDHISRGHLLPDAVAIIGTMDLVFGEV 497
Query: 692 DR 693
DR
Sbjct: 498 DR 499
>gi|88607271|ref|YP_505312.1| NADH dehydrogenase subunit D [Anaplasma phagocytophilum HZ]
gi|123494995|sp|Q2GJY9.1|NUOD_ANAPZ RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|88598334|gb|ABD43804.1| NADH dehydrogenase I, D subunit [Anaplasma phagocytophilum HZ]
Length = 395
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 235/413 (56%), Positives = 299/413 (72%), Gaps = 27/413 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
K +NFGPQHPAAHGV+RLILE+ GEV+ + DPHIGLLHR TEKL E +TYLQ+LPY D
Sbjct: 10 KPMTINFGPQHPAAHGVMRLILEMSGEVIERIDPHIGLLHRGTEKLIEYKTYLQALPYFD 69
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYVS M EHAY + +E+LL ++PIRA+Y+RV+F E+TRLLNHL+ + +LD GA
Sbjct: 70 RLDYVSPMSQEHAYSLCVERLLGCEVPIRAKYLRVIFCELTRLLNHLLNVACQALDSGAT 129
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
LL+ F ERE +L YE SGAR H+AY RPGG+ D+P+
Sbjct: 130 TPLLWIFEEREKILSFYERASGARFHSAYIRPGGLAADVPD------------------- 170
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
LLD I +FTN FPK +D + LLT+N IWKQR V IG V+ ++AL GF+GPM
Sbjct: 171 ------GLLDDIHEFTNYFPKLLDSVDDLLTENSIWKQRNVEIGKVTKQQALDWGFSGPM 224
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
LR G+ WDLRK QPYEIY++L+F +P+G NGD YDRYLVR+ E+R+S I++QC++ +
Sbjct: 225 LRACGIPWDLRKSQPYEIYDILDFKVPVGSNGDCYDRYLVRMAEIRESLYILEQCLRDIP 284
Query: 581 SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIY 640
S GPV +++ KI P R +K +ME LIHHFKLF+EG+ VP GE Y+ VE PKGEFG+Y
Sbjct: 285 S--GPVKTDDRKIAPPKREELKYSMEALIHHFKLFSEGYKVPEGEAYAAVEAPKGEFGVY 342
Query: 641 LVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+VSDG NKPYR +IRSPGFAHLQ++ M GHM++D+ IIG+ DIVFGEIDR
Sbjct: 343 IVSDGTNKPYRCRIRSPGFAHLQAIDAMARGHMLADLPVIIGSLDIVFGEIDR 395
>gi|424894566|ref|ZP_18318140.1| NADH dehydrogenase I, D subunit [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393178793|gb|EJC78832.1| NADH dehydrogenase I, D subunit [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 396
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 235/416 (56%), Positives = 304/416 (73%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 6 VRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHAY MA+EKLL I+IPIR Q IRV++ EI R+L+HL+ + + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAYAMAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHAAY RPGGV++DLPE
Sbjct: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYVRPGGVHQDLPE------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+ I D+ + F K +D+ + LLT NRI+KQR V IGVVS E + GF+G
Sbjct: 168 -------QLVQDIGDWCDPFLKALDDIDNLLTGNRIFKQRNVDIGVVSLEDCWAWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLR+ QPYE Y+ L FDIPIGKNGD+YDRYL+R+ EMRQS +I+KQC+ L
Sbjct: 221 MVRGSGAAWDLRRAQPYECYSDLEFDIPIGKNGDNYDRYLIRMIEMRQSVRIMKQCVNRL 280
Query: 580 RSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
S+ GP S + K+ P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGEF
Sbjct: 281 LSDAKTGPFSSIDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG NKPYR KIR+PG+AHLQ++ M GH ++DV ++G+ DIVFGE+DR
Sbjct: 341 GVYLVSDGTNKPYRCKIRAPGYAHLQAMDFMCRGHQLADVAAVLGSLDIVFGEVDR 396
>gi|353238184|emb|CCA70138.1| probable NADH dehydrogenase (ubiquinone) 49K chain [Piriformospora
indica DSM 11827]
Length = 463
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 230/414 (55%), Positives = 298/414 (71%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++ + +NFGPQHPAAHGVLRLILEL GE + +ADPHIGLLHR TEKL E +TY+Q+LPY
Sbjct: 77 MRHFTINFGPQHPAAHGVLRLILELNGEEILRADPHIGLLHRGTEKLCEYKTYIQALPYF 136
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMM NE Y +A+EKLLNI++P RAQ+IR +F EITR+LNHLM + +H++D+GA
Sbjct: 137 DRLDYVSMMTNEQCYSLAVEKLLNIEVPERAQWIRTLFGEITRILNHLMAVLTHAMDVGA 196
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L++ YE VSGAR+HAAY RPGGV DLP
Sbjct: 197 LTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVAFDLPH------------------ 238
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD I + +F +DE E ++T NRIWK R +G+G V+ ++AL GFTG
Sbjct: 239 -------GLLDDIFKWATQFSTRVDEIEEVITGNRIWKGRTIGVGPVTAKQALDYGFTGV 291
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSGV WD+RK PY+ Y + FDIP+G NGD YDRYL R++EMR+S +II QC+
Sbjct: 292 MLRGSGVPWDIRKAMPYDKYAEVEFDIPVGSNGDCYDRYLCRVQEMRESLRIIGQCLN-- 349
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + +++KI+ P R MK +ME LIHHFKLF+EG++VP GE YS +E PKGE G+
Sbjct: 350 KMPPGVIKVDDHKISPPPRAMMKESMESLIHHFKLFSEGYHVPPGETYSAIEAPKGEMGV 409
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
Y+VSDG+N+PYR++IR+PGFAHL M+ H ++D VTIIGT D+VFGE+DR
Sbjct: 410 YVVSDGSNRPYRVRIRAPGFAHLAGADFMMRHHFVADAVTIIGTMDLVFGEVDR 463
>gi|254560050|ref|YP_003067145.1| NADH-quinone oxidoreductase subunit D [Methylobacterium extorquens
DM4]
gi|254267328|emb|CAX23160.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
[Methylobacterium extorquens DM4]
Length = 396
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 231/416 (55%), Positives = 306/416 (73%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
I+++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TYLQ+ PY
Sbjct: 6 IRNFSINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEHKTYLQATPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +AIE+L I++P RAQ IR +F EI RLL+HL+ + + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAFCLAIERLAGIEVPRRAQLIRTLFCEIGRLLSHLLNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SGAR+HA Y+RPGGV++DLP
Sbjct: 126 LTPPLWGFEEREKLMIFYERASGARLHANYFRPGGVHQDLPP------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
+L+D IE F + F K +D+ + L+ NRI+KQR V IG+VS + A++ GF+G
Sbjct: 168 -------ALIDDIEAFCDPFLKVVDDLDNLVMANRIFKQRNVDIGIVSVDEAMAWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG+ WDLRK QPYE+Y + FDIP+GKNGD+YDR ++R+EEMR+S KI++QC+ L
Sbjct: 221 MVRGSGIPWDLRKSQPYELYEEMEFDIPVGKNGDTYDRQVIRMEEMRESVKIMRQCVAKL 280
Query: 580 R--SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
R + +GP+ S + K P R MK +ME LIHHFKL+TEGF+VP GE+Y+ VE PKGEF
Sbjct: 281 REPAGQGPIASIDRKFAPPPRREMKRSMEALIHHFKLYTEGFHVPEGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG NKPYR KIR+PGFAHLQ++ M GH+++DV ++GT DIVFGE+DR
Sbjct: 341 GVYLVSDGTNKPYRCKIRAPGFAHLQAMDWMCRGHLLADVSCVLGTLDIVFGEVDR 396
>gi|365879939|ref|ZP_09419335.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
(NDH-1, chain D) [Bradyrhizobium sp. ORS 375]
gi|365292077|emb|CCD91866.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
(NDH-1, chain D) [Bradyrhizobium sp. ORS 375]
Length = 398
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 231/415 (55%), Positives = 307/415 (73%), Gaps = 27/415 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
+++ +NFGPQHPAAHGVLRL+LEL+GEVVR+ DPHIGLLHR TEKL E +TYLQ++PY D
Sbjct: 9 RNFTINFGPQHPAAHGVLRLVLELDGEVVRRVDPHIGLLHRGTEKLIEVKTYLQAIPYFD 68
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYV+ + EHA+ +AIE+LL I +P R Q IRV++ E++R+L+HL+ + + ++D+GA+
Sbjct: 69 RLDYVAPLTQEHAFCLAIERLLGIAVPRRGQLIRVLYHELSRILSHLLNVTTQAMDVGAL 128
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
L+ F ERE L+ YE SG+RMHA YYRPGGV++DLP
Sbjct: 129 TPPLWGFEEREKLMTFYERASGSRMHANYYRPGGVHQDLPP------------------- 169
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
L+D IE + + F + +D+ + LL+ NRI+KQR V IGVV+ +A GF+G M
Sbjct: 170 ------KLIDDIEAWCDPFLRVVDDLDALLSRNRIFKQRNVDIGVVTLAQAWEWGFSGVM 223
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
+RGSG WDLRK QPY+ Y ++FD+PIG+NGD YDRYL+R+EEMRQS +I+KQCI LR
Sbjct: 224 VRGSGAAWDLRKAQPYDCYAEMDFDVPIGRNGDCYDRYLIRMEEMRQSVRIMKQCIAKLR 283
Query: 581 S--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ +GPV+ +NK+ P R MK +ME LIHHFKL+TEGF+VP GEIY VE PKGEFG
Sbjct: 284 AADGQGPVLIQDNKVAPPRRGEMKRSMEALIHHFKLYTEGFHVPPGEIYVAVEAPKGEFG 343
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++LVSDG+NKPYR KIRSPGFAHLQ++ + GH+++DV I+G+ DIVFGE+DR
Sbjct: 344 VFLVSDGSNKPYRCKIRSPGFAHLQAMDMLCRGHLLADVSAILGSLDIVFGEVDR 398
>gi|453085896|gb|EMF13939.1| NADH dehydrogenase I, D subunit [Mycosphaerella populorum SO2202]
Length = 482
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 234/415 (56%), Positives = 296/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E +TYLQ+LPY
Sbjct: 95 KIRHYTVNFGPQHPAAHGVLRLILELNGEEIIRADPHVGLLHRGTEKLIEYKTYLQALPY 154
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLNI+IP RA++IR MF EITR+LNHLM + SH++D+G
Sbjct: 155 FDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKWIRTMFAEITRILNHLMSVLSHAMDVG 214
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV +DLP
Sbjct: 215 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDLPV----------------- 257
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E +LTDNRIW R G+GVVS + AL M F+G
Sbjct: 258 --------GLLDDIYQWATQFGDRIDETEEMLTDNRIWLGRTKGVGVVSAKDALDMSFSG 309
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y+ + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 310 VMLRGSGVPWDVRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNK 369
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GP+ + KI P R MK NME LIHHF L+++G+ VP GE YS +E PKGE G
Sbjct: 370 MPA--GPIKVEDYKIAPPPRAAMKENMEALIHHFLLYSKGYTVPPGETYSAIEAPKGEMG 427
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+++VSDG+ +PYR KIR+PGFAHL ++ GH+++D V IIGT D+VFGE+DR
Sbjct: 428 VFVVSDGSERPYRCKIRAPGFAHLACFDQVSRGHLLADAVAIIGTMDLVFGEVDR 482
>gi|389751342|gb|EIM92415.1| NADH-ubiquinone oxidoreductase [Stereum hirsutum FP-91666 SS1]
Length = 465
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 233/414 (56%), Positives = 296/414 (71%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++ + +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E +TY Q+LPY
Sbjct: 79 MRHFTVNFGPQHPAAHGVLRLILELNGEEILRADPHVGLLHRGTEKLIEYKTYTQALPYF 138
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMM NE Y +A+EKLLNI++P RA++IR +F EITR+LNHLM + +H++D+GA
Sbjct: 139 DRLDYVSMMTNELCYSLAVEKLLNIEVPERAKWIRTLFGEITRILNHLMAVLTHAMDVGA 198
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L++ YE VSGAR+HAAY RPGGV DLP
Sbjct: 199 LTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVAFDLPH------------------ 240
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LL+ I + +F +DE E ++T NRIWKQR +GIG V+ + AL F+G
Sbjct: 241 -------GLLNDIYQWATQFSSRVDEIEEVVTGNRIWKQRTIGIGPVTAQEALDYSFSGV 293
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSGVKWDLRK PY+ Y+ + FD+PIGKNGD YDRYL R++E R+S +II QC+
Sbjct: 294 MLRGSGVKWDLRKIAPYDKYDEVEFDVPIGKNGDCYDRYLCRVQEFRESLRIIDQCLN-- 351
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ GPV +++K+ P R +MK +ME LIHHFKLF+EG+ VP GE YS +E PKGE G+
Sbjct: 352 KITTGPVKVDDHKLVPPPRASMKESMESLIHHFKLFSEGYSVPPGETYSAIEAPKGEMGV 411
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG N+PYR KIR+PGFAHL M+ H I+DVV IIGT D+VFGE+DR
Sbjct: 412 YLVSDGTNRPYRCKIRAPGFAHLAGADFMMRQHYIADVVAIIGTMDLVFGEVDR 465
>gi|218529211|ref|YP_002420027.1| NADH dehydrogenase I subunit D [Methylobacterium extorquens CM4]
gi|218521514|gb|ACK82099.1| NADH dehydrogenase I, D subunit [Methylobacterium extorquens CM4]
Length = 396
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 231/416 (55%), Positives = 306/416 (73%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
I+++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TYLQ+ PY
Sbjct: 6 IRNFSINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEHKTYLQATPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +AIE+L I++P RAQ IR +F EI RLL+HL+ + + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAFCLAIERLAGIEVPRRAQLIRTLFCEIGRLLSHLLNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SGAR+HA Y+RPGGV++DLP
Sbjct: 126 LTPPLWGFEEREKLMIFYERASGARLHANYFRPGGVHQDLPP------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
+L+D IE F + F K +D+ + L+ NRI+KQR V IG+VS + A++ GF+G
Sbjct: 168 -------ALIDDIEAFCDPFLKVVDDLDNLVMANRIFKQRNVDIGIVSVDEAMAWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG+ WDLRK QPYE+Y + FDIP+GKNGD+YDR ++R+EEMR+S KI++QC+ L
Sbjct: 221 MVRGSGIPWDLRKSQPYELYEEMEFDIPVGKNGDTYDRQVIRMEEMRESVKIMRQCVTKL 280
Query: 580 R--SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
R + +GP+ S + K P R MK +ME LIHHFKL+TEGF+VP GE+Y+ VE PKGEF
Sbjct: 281 REPAGQGPIASIDGKFAPPPRREMKRSMEALIHHFKLYTEGFHVPEGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG NKPYR KIR+PGFAHLQ++ M GH+++DV ++GT DIVFGE+DR
Sbjct: 341 GVYLVSDGTNKPYRCKIRAPGFAHLQAMDWMCRGHLLADVSCVLGTLDIVFGEVDR 396
>gi|452979633|gb|EME79395.1| hypothetical protein MYCFIDRAFT_167272 [Pseudocercospora fijiensis
CIRAD86]
Length = 491
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 234/415 (56%), Positives = 296/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E +TY+Q+LPY
Sbjct: 104 KIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYMQALPY 163
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLNI+IP RA++IR MF EITR+LNHLM + SH++D+G
Sbjct: 164 FDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKWIRTMFAEITRILNHLMSVLSHAMDVG 223
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV +D+P
Sbjct: 224 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDIPV----------------- 266
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E +LTDNRIW R GIGVV AL+M F+G
Sbjct: 267 --------GLLDDIYQWATQFGDRIDETEEMLTDNRIWIGRTKGIGVVPAADALNMSFSG 318
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ WD+RK QPY+ Y+ + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 319 VMLRGSGIPWDVRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNK 378
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + KI+ P R MK NME LIHHF LF++G+ VP GE YS +E PKGE G
Sbjct: 379 MPA--GPVKFEDYKISPPPRAAMKENMEALIHHFLLFSKGYTVPPGETYSAIEAPKGEMG 436
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDG+ +PYR KIR+PGFAHL ++ GH+++D V IIGT D+VFGE+DR
Sbjct: 437 VYVVSDGSERPYRCKIRAPGFAHLSCFDQISRGHLLADAVAIIGTMDLVFGEVDR 491
>gi|163850514|ref|YP_001638557.1| NADH dehydrogenase I subunit D [Methylobacterium extorquens PA1]
gi|240137579|ref|YP_002962050.1| NADH dehydrogenase I subunit D [Methylobacterium extorquens AM1]
gi|418058653|ref|ZP_12696622.1| NAD(P)H-quinone oxidoreductase subunit H [Methylobacterium
extorquens DSM 13060]
gi|218534414|sp|A9W1N0.1|NUOD_METEP RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|163662119|gb|ABY29486.1| NADH dehydrogenase I, D subunit [Methylobacterium extorquens PA1]
gi|240007547|gb|ACS38773.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
[Methylobacterium extorquens AM1]
gi|373567798|gb|EHP93758.1| NAD(P)H-quinone oxidoreductase subunit H [Methylobacterium
extorquens DSM 13060]
Length = 396
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 231/416 (55%), Positives = 306/416 (73%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
I+++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TYLQ+ PY
Sbjct: 6 IRNFSINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEHKTYLQATPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +AIE+L I++P RAQ IR +F EI RLL+HL+ + + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAFCLAIERLAGIEVPRRAQLIRTLFCEIGRLLSHLLNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SGAR+HA Y+RPGGV++DLP
Sbjct: 126 LTPPLWGFEEREKLMIFYERASGARLHANYFRPGGVHQDLPP------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
+L+D IE F + F K +D+ + L+ NRI+KQR V IG+VS + A++ GF+G
Sbjct: 168 -------ALIDDIEAFCDPFLKVVDDLDNLVMANRIFKQRNVDIGIVSVDEAMAWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG+ WDLRK QPYE+Y + FDIP+GKNGD+YDR ++R+EEMR+S KI++QC+ L
Sbjct: 221 MVRGSGIPWDLRKSQPYELYEEMEFDIPVGKNGDTYDRQVIRMEEMRESVKIMRQCVAKL 280
Query: 580 R--SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
R + +GP+ S + K P R MK +ME LIHHFKL+TEGF+VP GE+Y+ VE PKGEF
Sbjct: 281 REPAGQGPIASIDGKFAPPPRREMKRSMEALIHHFKLYTEGFHVPEGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG NKPYR KIR+PGFAHLQ++ M GH+++DV ++GT DIVFGE+DR
Sbjct: 341 GVYLVSDGTNKPYRCKIRAPGFAHLQAMDWMCRGHLLADVSCVLGTLDIVFGEVDR 396
>gi|319408582|emb|CBI82237.1| NADH dehydrogenase I, D subunit [Bartonella schoenbuchensis R1]
Length = 396
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 230/418 (55%), Positives = 307/418 (73%), Gaps = 27/418 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
+ ++++ +NFGPQHPAAHGVLR++LEL+GEVV + DPHIGLLHR TEKL E +TYLQ+ P
Sbjct: 4 VNVRNFNINFGPQHPAAHGVLRMVLELDGEVVERVDPHIGLLHRGTEKLMETKTYLQACP 63
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y+DRLDYV+ M EHA+V+A+EKLL I++P R Q IRV+F EI R+LNHL+ + + ++D+
Sbjct: 64 YLDRLDYVAPMNQEHAFVLAVEKLLGIEVPKRGQLIRVLFSEIGRILNHLLNVTTQAMDV 123
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GA+ L+ F +RE L+ YE GAR+HA Y+RPGGV+RDLPE
Sbjct: 124 GALTPPLWGFEQRERLMIFYERACGARLHANYFRPGGVHRDLPE---------------- 167
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
SL++ I +F + F + + + L+T NRI+KQR V IGVVS + A + GF+
Sbjct: 168 ---------SLIEDIGNFIDPFLVALGKLDALITPNRIFKQRNVDIGVVSSDEAWARGFS 218
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
G M+RG+GV WDLRK QPYE Y+ + FDIP+GKN D YDRYL+R+EEMRQS KI++QC+
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYDEMEFDIPVGKNSDCYDRYLIRMEEMRQSAKIMRQCVN 278
Query: 578 WLRSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
L S + GPV + ++KI P R MK++ME LIHHFKL+TEGF+ P GE+Y VE PKG
Sbjct: 279 RLLSTERNGPVSNLDHKIVPPKRNEMKNSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFG+YLVSDG NKPYR+K+R+PGFAHLQ++ + GHM++D I+G+ DIVFGE+DR
Sbjct: 339 EFGVYLVSDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAILGSIDIVFGEVDR 396
>gi|188580282|ref|YP_001923727.1| NADH dehydrogenase I subunit D [Methylobacterium populi BJ001]
gi|218534416|sp|B1ZA43.1|NUOD_METPB RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|179343780|gb|ACB79192.1| NADH dehydrogenase I, D subunit [Methylobacterium populi BJ001]
Length = 396
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 233/416 (56%), Positives = 305/416 (73%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
I+++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TYLQ+ PY
Sbjct: 6 IRNFSINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEHKTYLQATPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVS M EHA+ +AIE+L I++P RAQ IR +F EI RLL+HL+ + + ++D+GA
Sbjct: 66 DRLDYVSPMNQEHAFCLAIERLAGIEVPRRAQLIRTLFCEIGRLLSHLLNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SGAR+HA Y+RPGGV++DLP
Sbjct: 126 LTPPLWGFEEREKLMIFYERASGARLHANYFRPGGVHQDLPP------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
+L+D IE F + F K +D+ + L+ NRI+KQR V IG+VS + A++ GF+G
Sbjct: 168 -------ALIDDIEAFCDPFLKVVDDLDNLVMANRIFKQRNVDIGIVSVDEAMAWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG+ WDLRK QPYE Y ++FDIP+GKNGD+YDR ++R+EEMR+S KI++QC L
Sbjct: 221 MVRGSGIPWDLRKSQPYECYEEMDFDIPVGKNGDTYDRQVIRMEEMRESVKIMRQCCAKL 280
Query: 580 R--SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
R S +GP+ S + K P R MK +ME LIHHFKL+TEGF+VP GE+Y+ VE PKGEF
Sbjct: 281 REPSGQGPIASIDGKFAPPPRREMKRSMEALIHHFKLYTEGFHVPEGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG NKPYR KIR+PGFAHLQ++ M GH+++DV ++GT DIVFGE+DR
Sbjct: 341 GVYLVSDGTNKPYRCKIRAPGFAHLQAMDWMCRGHLLADVSCVLGTLDIVFGEVDR 396
>gi|116180928|ref|XP_001220313.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Chaetomium globosum CBS 148.51]
gi|88185389|gb|EAQ92857.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Chaetomium globosum CBS 148.51]
Length = 485
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 229/415 (55%), Positives = 298/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++ Y +NFGPQHPAAHGVLRLILEL GE + ++DPH+GLLHR TEKL E +TYLQ+LPY
Sbjct: 98 KVRHYTVNFGPQHPAAHGVLRLILELNGEEIIRSDPHVGLLHRGTEKLCEYKTYLQALPY 157
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLNI+IP RA++IR +F E+TR+LNHLM + +H++D+G
Sbjct: 158 FDRLDYVSMMTNEQCFSLAVEKLLNIEIPDRAKFIRTLFGELTRVLNHLMAVLTHAMDVG 217
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV++D+P
Sbjct: 218 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPV----------------- 260
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E +LTDNRIW RL G+GVVS AL++ FTG
Sbjct: 261 --------GLLDDIYQWATQFGDRIDETEEMLTDNRIWINRLQGVGVVSAADALNLSFTG 312
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y+ + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 313 VMLRGSGVPWDIRKSQPYDAYDQVEFDVPVGTNGDCYDRYLCRMEEFRQSLRIIIQCLNK 372
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + KI+ P R MK NME LIHHF L+T+G+ VP G+ YS +E PKGE G
Sbjct: 373 MPA--GPVRVEDYKISPPPRSAMKENMEALIHHFLLYTKGYAVPPGDTYSAIEAPKGEMG 430
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDG+ +PYR+ IR+PGFAHL + GH+++D V +IGT D+VFGE+DR
Sbjct: 431 VYVVSDGSERPYRVSIRAPGFAHLSGFDHVSRGHLLADAVAVIGTMDLVFGEVDR 485
>gi|56697620|ref|YP_167989.1| NADH dehydrogenase subunit D [Ruegeria pomeroyi DSS-3]
gi|81676164|sp|Q5LPR7.1|NUOD_SILPO RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|56679357|gb|AAV96023.1| NADH dehydrogenase I, D subunit [Ruegeria pomeroyi DSS-3]
Length = 405
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 232/415 (55%), Positives = 303/415 (73%), Gaps = 26/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ +NFGPQHPAAHGVLR++LEL+GE+V + DPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 17 KIRNFNINFGPQHPAAHGVLRMVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNLPY 76
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +AIEKL +++P RA IRV++ EI R+LNHL+ + + ++D+G
Sbjct: 77 FDRLDYVAPMNQEHAWCLAIEKLTGVEVPRRASLIRVLYSEIGRILNHLLNVTTQAMDVG 136
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE GAR+HAAY+RPGGV++DLP+
Sbjct: 137 ALTPPLWGFEEREKLMVFYERACGARLHAAYFRPGGVHQDLPD----------------- 179
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+LLD IE +++ FP +D+ + LLT+NRI+KQR IGVVS E L GF+G
Sbjct: 180 --------ALLDDIEAWSHTFPNVLDDIDGLLTENRIFKQRNCDIGVVSEEEILQYGFSG 231
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG+ WDLR+ QPYE Y+ F +P+GKNGD YDRYL R+EEMRQS II+Q I
Sbjct: 232 VMVRGSGLAWDLRRAQPYECYDEFEFQVPVGKNGDCYDRYLCRMEEMRQSISIIRQAIAK 291
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR G V++ K+T P R +MK++ME LIHHFKL+TEGF+VP GE+Y+ VE PKGEFG
Sbjct: 292 LRDCPGDVLA-RGKLTPPKRGDMKTSMESLIHHFKLYTEGFHVPAGEVYAAVEAPKGEFG 350
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLV+DG NKPYR KIR+PG+ HLQ++ + GH ++DV IIGT DIVFGEIDR
Sbjct: 351 VYLVADGTNKPYRSKIRAPGYLHLQAMDHVARGHQLADVAAIIGTMDIVFGEIDR 405
>gi|423712691|ref|ZP_17686991.1| NADH-quinone oxidoreductase subunit D [Bartonella washoensis
Sb944nv]
gi|395411484|gb|EJF78006.1| NADH-quinone oxidoreductase subunit D [Bartonella washoensis
Sb944nv]
Length = 396
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 231/418 (55%), Positives = 306/418 (73%), Gaps = 27/418 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
+ ++++ +NFGPQHPAAHGVLR++LEL+GEVV + DPHIGLLHR TEKL E +TYLQ+ P
Sbjct: 4 VNVRNFNINFGPQHPAAHGVLRMVLELDGEVVERVDPHIGLLHRGTEKLMETKTYLQAGP 63
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y+DRLDYV+ M EHA+V+AIEKLL ++IP R Q IRV+F EI R+LNHL+ + + ++D+
Sbjct: 64 YLDRLDYVAPMNQEHAFVLAIEKLLGVEIPKRGQLIRVLFSEIGRILNHLLNVTTQAMDV 123
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GA+ L+ F +RE L+ YE GAR+HA Y+RPGGV++DLPE
Sbjct: 124 GALTPPLWGFEQRERLMIFYERACGARLHANYFRPGGVHQDLPE---------------- 167
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
SL++ I +F + F ++ + L+T NRI+KQR V IGVVS + A + GF+
Sbjct: 168 ---------SLIEDIGNFIDPFLVSLGRLDALVTPNRIFKQRNVDIGVVSIDEAWARGFS 218
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
G M+RG+GV WDLRK QPYE Y+ + FDIP+GKN D YDRYL+R+EEMRQS KI++QC+
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYDEMEFDIPVGKNSDCYDRYLIRMEEMRQSAKIMRQCVD 278
Query: 578 WLRSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
L S + GPV S + KI P R MKS+ME LIHHFKL+TEGF+ P GE+Y VE PKG
Sbjct: 279 RLLSTEKNGPVSSLDRKIVPPKRCEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFG+YL+SDG NKPYR+K+R+PGFAHLQ++ + GHM++D I+G+ DIVFGE+DR
Sbjct: 339 EFGVYLISDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAILGSIDIVFGEVDR 396
>gi|358057556|dbj|GAA96554.1| hypothetical protein E5Q_03223 [Mixia osmundae IAM 14324]
Length = 473
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 232/414 (56%), Positives = 296/414 (71%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++ + +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E +TY Q+LPY
Sbjct: 87 LRHFTVNFGPQHPAAHGVLRLILELNGEEILRADPHVGLLHRGTEKLIEYKTYTQALPYF 146
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMM NE Y A+EKLLNI++P RA++IR +F EITR+LNHLM + +H++D+GA
Sbjct: 147 DRLDYVSMMTNELCYSRAVEKLLNIEVPERAKWIRTLFGEITRVLNHLMAVLTHAMDVGA 206
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L++ YE VSGAR+HAAY RPGGV DLP
Sbjct: 207 LTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVAFDLPH------------------ 248
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD I + F +DE+E +LT+NRIWK R VGIG V+ E AL+ GFTG
Sbjct: 249 -------GLLDDIFKWATAFSNRVDEFEEVLTENRIWKARTVGIGRVTAEEALAYGFTGV 301
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG+ WD+RK QPY+ Y+ + FD+P+G+NGD YDRYL RIEE RQS +II QC++
Sbjct: 302 MLRGSGIPWDIRKSQPYDAYDQVEFDVPVGRNGDCYDRYLCRIEEFRQSLRIISQCLQ-- 359
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + +++K+ +P R MK +ME IHHFKLF+EG+ VP GE YS +E PKGE G+
Sbjct: 360 KMPPGQIKVDDHKLVAPPRAVMKQSMEATIHHFKLFSEGYSVPPGETYSAIEAPKGEMGV 419
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+LVSDG+N+PYR KIR+PGFAHLQ M H + D+V IIGT D+VFGE+DR
Sbjct: 420 FLVSDGSNRPYRCKIRAPGFAHLQGSDFMSRHHFLPDMVAIIGTMDLVFGEVDR 473
>gi|254461816|ref|ZP_05075232.1| NADH dehydrogenase (quinone), D subunit [Rhodobacterales bacterium
HTCC2083]
gi|206678405|gb|EDZ42892.1| NADH dehydrogenase (quinone), D subunit [Rhodobacteraceae bacterium
HTCC2083]
Length = 407
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 234/415 (56%), Positives = 302/415 (72%), Gaps = 26/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 19 KIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNLPY 78
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +AIEKL +++P RA IRV++ EI R+LNHL+ + + +LD+G
Sbjct: 79 FDRLDYVAPMNQEHAWCLAIEKLCGVEVPRRASLIRVLYSEIGRVLNHLLNVTTQALDVG 138
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F +RE L+ YE GAR+HAAY+RPGGV++DLP+
Sbjct: 139 ALTPPLWGFEQREQLMIFYERACGARLHAAYFRPGGVHQDLPD----------------- 181
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+LLD IE +++ FPK +D+ LLT+NRI+KQR IGVV+ E L+ GF+G
Sbjct: 182 --------ALLDDIEAWSHEFPKFMDDMHGLLTENRIFKQRNADIGVVTEEDILNYGFSG 233
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG WDLR+ QPYE Y+ F IP+GKNGD YDRYL R+EEM QS IIKQ I
Sbjct: 234 VMVRGSGFAWDLRRAQPYECYDEFEFQIPVGKNGDCYDRYLCRMEEMTQSVSIIKQAIAK 293
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR G V++ K+T P R +MK++ME LIHHFKL+TEGF+VP GE+Y VE PKGEFG
Sbjct: 294 LREEPGDVMA-RGKLTPPKRGDMKTSMEALIHHFKLYTEGFHVPAGEVYCAVEAPKGEFG 352
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLV+DG+NKPYR KIR+PGF HLQ++ + GH ++DV IIGT D+VFGEIDR
Sbjct: 353 VYLVADGSNKPYRSKIRAPGFLHLQAMDHITVGHQLADVAAIIGTMDVVFGEIDR 407
>gi|153009748|ref|YP_001370963.1| NADH dehydrogenase subunit D [Ochrobactrum anthropi ATCC 49188]
gi|404320275|ref|ZP_10968208.1| NADH dehydrogenase subunit D [Ochrobactrum anthropi CTS-325]
gi|218534436|sp|A6X1N0.1|NUOD_OCHA4 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|151561636|gb|ABS15134.1| NADH dehydrogenase I, D subunit [Ochrobactrum anthropi ATCC 49188]
Length = 396
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 231/417 (55%), Positives = 305/417 (73%), Gaps = 27/417 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 5 QVRNFNINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLMEAKTYLQALPY 64
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
+DRLDYV+ M EHAY +A+E+LL I +P R Q IRV++ EI R+LNHL+ + + ++D+G
Sbjct: 65 LDRLDYVAPMNQEHAYALAVERLLGIDVPKRGQLIRVLYSEIGRILNHLLNVTTQAMDVG 124
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE GARMHAAY+RPGGV++DLP+
Sbjct: 125 ALTPPLWGFEEREKLMVFYERACGARMHAAYFRPGGVHQDLPD----------------- 167
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L++ I + + F ++ + L+T NRI+KQR V IGVV E A + GF+G
Sbjct: 168 --------QLVEDIGKWIDPFFNTLNNLDDLITPNRIFKQRNVDIGVVKLEDAWAWGFSG 219
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG WDLRK QPYE YN + FDIPIGKNGD YDRYL+R+EEMRQS +I++QC+
Sbjct: 220 VMVRGSGAAWDLRKSQPYECYNEMEFDIPIGKNGDCYDRYLIRMEEMRQSARIMRQCVDL 279
Query: 579 L--RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
L + GPV + +NKI P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGE
Sbjct: 280 LLGKERVGPVSNADNKIVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGE 339
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG++LVSDG+NKPYR K+R+PGFAHLQ++ + GHM++DV I+G+ DIVFGE+DR
Sbjct: 340 FGVFLVSDGSNKPYRCKLRAPGFAHLQAMDFLCRGHMLADVSAILGSLDIVFGEVDR 396
>gi|148255912|ref|YP_001240497.1| NADH dehydrogenase subunit D [Bradyrhizobium sp. BTAi1]
gi|218534454|sp|A5EK97.1|NUOD_BRASB RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|146408085|gb|ABQ36591.1| NADH dehydrogenase subunit D [Bradyrhizobium sp. BTAi1]
Length = 398
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 232/416 (55%), Positives = 307/416 (73%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 8 LRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIETKTYLQAMPYF 67
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +A E+LL I++P R Q IRV++ EI RLL+HL+ + + ++D+GA
Sbjct: 68 DRLDYVAPMNQEHAFCLAAERLLGIEVPRRGQLIRVLYSEIGRLLSHLLNVTTQAMDVGA 127
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHA Y+R GGV++DLP
Sbjct: 128 LTPPLWGFEEREKLMVFYERASGSRMHANYFRIGGVHQDLPP------------------ 169
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I+ F + F K +D+ + LLT NRI+KQR V IGVV+ ++A GF+G
Sbjct: 170 -------KLIDDIDAFCDPFLKVVDDLDQLLTGNRIFKQRNVDIGVVTLKQAWEWGFSGV 222
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLRK QPY++Y + FD+PIGKNGD YDRYL+R+EEMRQS +I+KQCI+ L
Sbjct: 223 MVRGSGAAWDLRKSQPYDVYAEMEFDVPIGKNGDCYDRYLIRMEEMRQSVRIMKQCIQKL 282
Query: 580 RS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
R+ +GPV+ +NKI P R MK +ME LIHHFKL+TEG +VP GEIY+ VE PKGEF
Sbjct: 283 RAPDGQGPVVVTDNKIAPPRRGEMKRSMEALIHHFKLYTEGVHVPAGEIYAAVEAPKGEF 342
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG+NKPY+ KIR+PGFAHLQ++ + GH+++DV I+G+ DIVFGE+DR
Sbjct: 343 GVYLVSDGSNKPYKCKIRAPGFAHLQAMDFLCRGHLLADVSAILGSLDIVFGEVDR 398
>gi|395791022|ref|ZP_10470481.1| NADH-quinone oxidoreductase subunit D [Bartonella alsatica IBS 382]
gi|395409318|gb|EJF75917.1| NADH-quinone oxidoreductase subunit D [Bartonella alsatica IBS 382]
Length = 396
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 231/418 (55%), Positives = 305/418 (72%), Gaps = 27/418 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
+ ++++ +NFGPQHPAAHGVLR++LEL+GEVV + DPHIGLLHR TEKL E +TYLQ+ P
Sbjct: 4 VNVRNFNINFGPQHPAAHGVLRMVLELDGEVVERVDPHIGLLHRGTEKLMETKTYLQAGP 63
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y+DRLDYV+ M EHA+V+AIEKLL + +P R Q IRV+F EI R+LNHL+ + + ++D+
Sbjct: 64 YLDRLDYVAPMNQEHAFVLAIEKLLGVDVPKRGQLIRVLFSEIGRILNHLLNVTTQAMDV 123
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GA+ L+ F +RE L+ YE GAR+HA Y+RPGGV++DLPE
Sbjct: 124 GALTPPLWGFEQRERLMIFYERACGARLHANYFRPGGVHQDLPE---------------- 167
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
SL++ I +F + F + + + L+T NRI+KQR V IGVVS A + GF+
Sbjct: 168 ---------SLIEDIGNFIDPFLIALGKLDALVTPNRIFKQRNVDIGVVSINEAWARGFS 218
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
G M+RG+GV WDLRK QPYE YN + FDIP+GKN D YDRYL+R+EEMRQS KI++QC++
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYNEMEFDIPVGKNSDCYDRYLIRMEEMRQSAKIMRQCVE 278
Query: 578 WLRSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
L S + GPV S + KI P R MKS+ME LIHHFKL+TEGF+ P GE+Y VE PKG
Sbjct: 279 RLLSTEKNGPVSSLDRKIVPPKRSEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFG+YL+SDG NKPYR+K+R+PGFAHLQ++ + GHM++D I+G+ DIVFGE+DR
Sbjct: 339 EFGVYLISDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAILGSIDIVFGEVDR 396
>gi|346324395|gb|EGX93992.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Cordyceps militaris
CM01]
Length = 474
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 231/415 (55%), Positives = 296/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E +TYLQ+LPY
Sbjct: 87 KVRHYTVNFGPQHPAAHGVLRLILELNGEEIIRADPHVGLLHRGTEKLIEYKTYLQALPY 146
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLNI+IP RA+YIR +F EITR+LNHLM + SH++D+G
Sbjct: 147 FDRLDYVSMMTNEQCFALAVEKLLNIEIPDRAKYIRTLFGEITRILNHLMSVLSHAMDVG 206
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+H+AY RPGGV++D+P
Sbjct: 207 ALTPFLWGFEEREKLMEFYERVSGARLHSAYVRPGGVHQDIPV----------------- 249
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E +LTDNRIW +RL G+GV+ AL++ FTG
Sbjct: 250 --------GLLDDIYQWATQFGDRIDETEEMLTDNRIWIERLRGVGVLPAREALNLSFTG 301
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y+ + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 302 VMLRGSGVPWDVRKSQPYDAYDKVEFDVPVGTNGDCYDRYLCRMEEFRQSLRIIHQCLNQ 361
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ GPV + KI+ P R MK NME LIHHF L+T+G+ VP GE YS +E PKGE G
Sbjct: 362 MPG--GPVRVEDYKISPPPRSAMKENMEALIHHFLLYTKGYAVPPGETYSAIEAPKGEMG 419
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDG+ +PYR IR+PGFAHL + GH+++D V +IGT D+VFGE+DR
Sbjct: 420 VYVVSDGSERPYRCHIRAPGFAHLGGFDHVAKGHLLADAVAVIGTMDLVFGEVDR 474
>gi|319898885|ref|YP_004158978.1| NADH dehydrogenase I subunit D [Bartonella clarridgeiae 73]
gi|319402849|emb|CBI76400.1| NADH dehydrogenase I, D subunit [Bartonella clarridgeiae 73]
Length = 396
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 231/418 (55%), Positives = 305/418 (72%), Gaps = 27/418 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
+ ++++ +NFGPQHPAAHGVLR++LEL+GEVV + DPHIGLLHR TEKL E +TYLQ+ P
Sbjct: 4 VNVRNFNINFGPQHPAAHGVLRMVLELDGEVVERVDPHIGLLHRGTEKLMETKTYLQAGP 63
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y+DRLDYV+ M EHA+V+AIEKLL +++P R Q IRV+F EI R+LNHL+ + + ++D+
Sbjct: 64 YLDRLDYVAPMNQEHAFVLAIEKLLGVEVPKRGQLIRVLFSEIGRILNHLLNVTTQAMDV 123
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GA+ L+ F +RE L+ YE GAR+HA Y+RPGGV+RDLPE
Sbjct: 124 GALTPPLWGFEQREKLMIFYERACGARLHANYFRPGGVHRDLPE---------------- 167
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
SL++ I +F + F +D+ + L+T NRI+KQR V IGVVS A + F+
Sbjct: 168 ---------SLIEDIGNFIDPFLIALDKLDALITPNRIFKQRNVDIGVVSINEAWARAFS 218
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
G M+RG+GV WDLRK QPYE Y+ + FDIP+GKN D YDRYL+R+EEMRQS KI++QC+
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYDEMEFDIPVGKNSDCYDRYLIRMEEMRQSTKIMRQCVN 278
Query: 578 WLRSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
L ++ GPV S + KI P R MK++ME LIHHFKL+TEGF+ P GE+Y VE PKG
Sbjct: 279 RLLGSERNGPVSSLDRKIVPPKRSEMKNSMEALIHHFKLYTEGFHTPSGEVYVAVEAPKG 338
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFG+YLVSDG NKPYR+K+R+PGFAHLQ++ + GHM++D I+G+ DIVFGEIDR
Sbjct: 339 EFGVYLVSDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAILGSIDIVFGEIDR 396
>gi|405381787|ref|ZP_11035610.1| NADH dehydrogenase I, D subunit [Rhizobium sp. CF142]
gi|397321674|gb|EJJ26089.1| NADH dehydrogenase I, D subunit [Rhizobium sp. CF142]
Length = 396
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 233/416 (56%), Positives = 303/416 (72%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 6 VRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHAY MA+EKLL I+IPIR Q IRV++ EI R+L+HL+ + + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAYAMAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHAAY+RPGGV++DLPE
Sbjct: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDLPE------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+ I + + FP +D+ + LLT NRI+KQR V IGVVS E + GF+G
Sbjct: 168 -------QLVQDIGKWCDEFPGKLDDIDDLLTGNRIFKQRNVDIGVVSLEDCWAWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLR+ QPYE Y+ L FDIPIGKNGD+YDRYL+R+ EMR+S KI+KQC+ L
Sbjct: 221 MVRGSGAAWDLRRAQPYECYSDLEFDIPIGKNGDNYDRYLIRMIEMRESVKIMKQCVNRL 280
Query: 580 --RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+ GP S + K+ P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGEF
Sbjct: 281 LGDAKAGPFSSIDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG NKPYR KIR+PG+AHLQ++ M GH ++DV ++G+ DIVFGE+DR
Sbjct: 341 GVYLVSDGTNKPYRCKIRAPGYAHLQAMDFMCRGHQLADVAAVLGSLDIVFGEVDR 396
>gi|209548865|ref|YP_002280782.1| NADH dehydrogenase subunit D [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|229891299|sp|B5ZYL5.1|NUOD_RHILW RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|209534621|gb|ACI54556.1| NADH dehydrogenase I, D subunit [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 396
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 234/416 (56%), Positives = 305/416 (73%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 6 VRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHAY +A+EKLL I+IPIR Q IRV++ EI R+L+HL+ + + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHAAY RPGGV++DLPE
Sbjct: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYVRPGGVHQDLPE------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+ I D+ + F K +D+ + LLT NRI+KQR V IGVVS E + GF+G
Sbjct: 168 -------QLVQDIGDWCDPFLKALDDIDNLLTGNRIFKQRNVDIGVVSLEDCWAWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLR+ QPYE Y+ L FDIPIGKNGD+YDRYL+R+ EMRQS +I+KQC+ L
Sbjct: 221 MVRGSGAAWDLRRSQPYECYSDLEFDIPIGKNGDNYDRYLIRMIEMRQSVRIMKQCVNRL 280
Query: 580 RSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
S+ GP S + K+ P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGEF
Sbjct: 281 LSDAKTGPFSSIDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG+NKPYR KIR+PG+AHLQ++ M GH ++DV ++G+ DIVFGE+DR
Sbjct: 341 GVYLVSDGSNKPYRCKIRAPGYAHLQAMDFMCRGHQLADVAAVLGSLDIVFGEVDR 396
>gi|395778247|ref|ZP_10458759.1| NADH-quinone oxidoreductase subunit D [Bartonella elizabethae
Re6043vi]
gi|395417455|gb|EJF83792.1| NADH-quinone oxidoreductase subunit D [Bartonella elizabethae
Re6043vi]
Length = 396
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 232/418 (55%), Positives = 308/418 (73%), Gaps = 27/418 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
+ ++++ +NFGPQHPAAHGVLR++LEL+GEVV + DPHIGLLHR TEKL E +TYLQ+ P
Sbjct: 4 VNVRNFNINFGPQHPAAHGVLRMVLELDGEVVERVDPHIGLLHRGTEKLMETKTYLQAGP 63
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y+DRLDYV+ M EHA+V+AIEKLL+IK+P R Q IRV+F EI R+LNHL+ + + ++D+
Sbjct: 64 YLDRLDYVAPMNQEHAFVLAIEKLLDIKVPKRGQLIRVLFSEIGRILNHLLNVTTQAMDV 123
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GA+ L+ F +RE L+ YE GAR+HA Y+RPGGV++DLPE
Sbjct: 124 GALTPPLWGFEQRERLMIFYERACGARLHANYFRPGGVHQDLPE---------------- 167
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
SL++ I +F + F ++ + + L+T NRI+KQR V IGVVS + A + GF+
Sbjct: 168 ---------SLVEDIGNFIDPFLVSLGKLDALVTPNRIFKQRNVDIGVVSIDEAWARGFS 218
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
G M+RG+GV WDLRK QPYE Y+ + FDIPIGKN D YDRYL+R+EEMRQS KI++QC++
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYDEMEFDIPIGKNSDCYDRYLIRMEEMRQSAKIMRQCVE 278
Query: 578 WLRSNKG--PVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
L + PV S + KI P R MKS+ME LIHHFKL+TEGF+ P GE+Y VE PKG
Sbjct: 279 RLLGTEKNEPVSSLDRKIVPPKRSEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFG+YLVSDG+NKPYR+K+R+PGFAHLQ++ + GHM++D I+G+ DIVFGE+DR
Sbjct: 339 EFGVYLVSDGSNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAILGSIDIVFGEVDR 396
>gi|383771513|ref|YP_005450578.1| NADP ubiquinone oxidoreductase chain D [Bradyrhizobium sp. S23321]
gi|381359636|dbj|BAL76466.1| NADP ubiquinone oxidoreductase chain D [Bradyrhizobium sp. S23321]
Length = 398
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 232/417 (55%), Positives = 308/417 (73%), Gaps = 27/417 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL EQ+TYLQ++PY
Sbjct: 7 QLRNFTINFGPQHPAAHGVLRLVLELDGEVVARVDPHIGLLHRGTEKLIEQKTYLQAIPY 66
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +A EKLL I++P R Q IRV++ EI R+L+HL+ + + ++D+G
Sbjct: 67 FDRLDYVAPMNQEHAFCLAAEKLLGIEVPRRGQLIRVLYCEIGRILSHLLNVTTQAMDVG 126
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE SG+RMHAA++R GGV++DLP+
Sbjct: 127 ALTPPLWGFEEREKLMVFYERASGSRMHAAFFRVGGVHQDLPQ----------------- 169
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L+D IE + + F K +D+ + LLT NRI+KQR V IGVV + A GF+G
Sbjct: 170 --------KLVDDIEAWCDPFLKVVDDLDRLLTANRIFKQRNVDIGVVPLKEAWEWGFSG 221
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG WDLRK QPYE Y ++FDIPIGKNGD YDRYL+R+EEMRQS +I+KQCI+
Sbjct: 222 VMVRGSGAAWDLRKSQPYECYAEMDFDIPIGKNGDCYDRYLIRMEEMRQSVRIMKQCIQK 281
Query: 579 LRS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
L + KGPV+ +NK+ P R +MK +ME LIHHFKL+TEG +VP GE+Y+ VE PKGE
Sbjct: 282 LNAPDGKGPVVVEDNKVAPPRRGDMKRSMEALIHHFKLYTEGVHVPAGEVYAAVEAPKGE 341
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YLV+DG NKPY+ KIR+PGFAHLQ++ + GH+++DV I+G+ DIVFGE+DR
Sbjct: 342 FGVYLVADGTNKPYKCKIRAPGFAHLQAMDHICRGHLLADVSAILGSLDIVFGEVDR 398
>gi|99080585|ref|YP_612739.1| NADH dehydrogenase subunit D [Ruegeria sp. TM1040]
gi|123252495|sp|Q1GIN9.1|NUOD_SILST RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|99036865|gb|ABF63477.1| NADH dehydrogenase I D subunit [Ruegeria sp. TM1040]
Length = 403
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 234/415 (56%), Positives = 304/415 (73%), Gaps = 26/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 15 KIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNLPY 74
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +AIEKL +++P RAQ IRV++ EI R+LNHL+ I + ++D+G
Sbjct: 75 FDRLDYVAPMNQEHAWCLAIEKLTGVEVPRRAQLIRVLYSEIGRILNHLLNITTQAMDVG 134
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE GAR+HAAY+RPGGV++DLP+
Sbjct: 135 ALTPPLWGFEEREKLMIFYERACGARLHAAYFRPGGVHQDLPD----------------- 177
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I+ + FPK +D+ + LLT+NRI+KQR IGVV+ + GF+G
Sbjct: 178 --------ELLDDIDLWAMEFPKVMDDIDGLLTENRIFKQRNCDIGVVTEDDIQKYGFSG 229
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG+ WDLR+ QPYE Y+ +F IP+GKNGD YDRYLVR+EEMRQS II+Q I
Sbjct: 230 VMVRGSGLAWDLRRAQPYECYDEFDFQIPVGKNGDCYDRYLVRMEEMRQSLSIIRQAIAK 289
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR G V++ K+T P R +MK++ME LIHHFKL+TEGF+VP GE+Y+ VE PKGEFG
Sbjct: 290 LREATGDVLA-RGKLTPPKRGDMKTSMESLIHHFKLYTEGFHVPEGEVYAAVEAPKGEFG 348
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLV+DG+NKPYR K+R+PGF HLQ++ + GH ++DV IIGT DIVFGEIDR
Sbjct: 349 VYLVADGSNKPYRAKLRAPGFLHLQAMDYVAKGHQLADVAAIIGTMDIVFGEIDR 403
>gi|319407264|emb|CBI80903.1| NADH dehydrogenase I, D subunit [Bartonella sp. 1-1C]
Length = 396
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 231/418 (55%), Positives = 306/418 (73%), Gaps = 27/418 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
+ ++++ +NFGPQHPAAHGVLR++LEL+GEVV + DPHIGLLHR TEKL E +TYLQ+ P
Sbjct: 4 VNVRNFNINFGPQHPAAHGVLRMVLELDGEVVERVDPHIGLLHRGTEKLMETKTYLQAGP 63
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y+DRLDYV+ M EHA+V+AIEKLL +++P R Q IRV+F EI R+LNHL+ + + ++D+
Sbjct: 64 YLDRLDYVAPMNQEHAFVLAIEKLLGVEVPKRGQLIRVLFSEIGRILNHLLNVTTQAMDV 123
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GA+ L+ F +RE L+ YE GAR+HA Y+RPGGV++DLPE
Sbjct: 124 GALTPPLWGFEQREKLMIFYERACGARLHANYFRPGGVHQDLPE---------------- 167
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
SL++ I +F + F +D+ + L+T NRI+KQR V IGVV+ A + F+
Sbjct: 168 ---------SLIEDIGNFIDPFLIALDKLDALITPNRIFKQRNVDIGVVNINEAWARAFS 218
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
G M+RG+GV WDLRK QPYE Y+ + FDIP+GKN D YDRYL+R+EEMRQS KI++QC+
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYDEMEFDIPVGKNSDCYDRYLIRMEEMRQSTKIMRQCVD 278
Query: 578 WLRSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
L S++ GPV S + K+ P R MKS+ME LIHHFKL+TEGF+ P GE+Y VE PKG
Sbjct: 279 RLLSSEKNGPVSSLDRKVVPPKRSEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFG+YLVSDG NKPYRIK+R+PGFAHLQ++ + GHM++D I+G+ DIVFGEIDR
Sbjct: 339 EFGVYLVSDGTNKPYRIKLRAPGFAHLQAMDFLTRGHMLADATAILGSIDIVFGEIDR 396
>gi|197105265|ref|YP_002130642.1| NADH dehydrogenase subunit D [Phenylobacterium zucineum HLK1]
gi|218534443|sp|B4RCM6.1|NUOD_PHEZH RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|196478685|gb|ACG78213.1| NADH dehydrogenase I, D subunit [Phenylobacterium zucineum HLK1]
Length = 411
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 228/419 (54%), Positives = 303/419 (72%), Gaps = 25/419 (5%)
Query: 275 FPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQ 334
P +++ + +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E R Y Q
Sbjct: 18 LPETKVRKFNINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLMEARPYAQ 77
Query: 335 SLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHS 394
++PY DRLDYV+ M EHAY +AIEKLL +++P+R IR ++DEI R+LNHL+ + + +
Sbjct: 78 TIPYFDRLDYVAPMNQEHAYCLAIEKLLGVEVPVRGLLIRTLYDEIGRILNHLLNVTTQA 137
Query: 395 LDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNN 454
+D+GA+ L+ F ERE L+ YE SGAR+HA YYR GGV +DLP
Sbjct: 138 MDVGALTPPLWGFEEREKLMIFYERASGARLHANYYRVGGVRQDLPP------------- 184
Query: 455 KATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSM 514
L+ I D+ + FPK +D+ E L+TDNRI+KQR V IGVV+ E A++
Sbjct: 185 ------------ELVQDISDWCDAFPKILDDIEGLITDNRIFKQRNVDIGVVTKEEAIAW 232
Query: 515 GFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQ 574
GF+G M+RGSG+ WDLR+ QPY +Y+ + FDIP+G NGD YDRYL R++EMR+S KI+KQ
Sbjct: 233 GFSGVMVRGSGIPWDLRRSQPYALYSEMEFDIPLGVNGDCYDRYLCRMQEMRESTKIMKQ 292
Query: 575 CIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPK 634
C + L GPV+ +++K++ P R MK +ME LIHHFKL+TEG+ P G++Y+CVE PK
Sbjct: 293 CCERLLKTSGPVLVDDHKVSPPRRGEMKRSMEALIHHFKLYTEGYRTPPGDVYACVEAPK 352
Query: 635 GEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
GEFG+YLVS+G NKPYR KIR+PG+ HLQ++ M GHM++DV I+G+ DIVFGEIDR
Sbjct: 353 GEFGVYLVSNGTNKPYRCKIRAPGYPHLQAMDWMNRGHMLADVSAILGSLDIVFGEIDR 411
>gi|384218456|ref|YP_005609622.1| NADH ubiquinone oxidoreductase chain D [Bradyrhizobium japonicum
USDA 6]
gi|354957355|dbj|BAL10034.1| NADH ubiquinone oxidoreductase chain D [Bradyrhizobium japonicum
USDA 6]
Length = 398
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 232/417 (55%), Positives = 307/417 (73%), Gaps = 27/417 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL EQ+TYLQ++PY
Sbjct: 7 QLRNFTINFGPQHPAAHGVLRLVLELDGEVVARVDPHIGLLHRGTEKLIEQKTYLQAIPY 66
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +A EKLL I++P R Q IRV++ EI R+L+HL+ + + ++D+G
Sbjct: 67 FDRLDYVAPMNQEHAFCLAAEKLLGIEVPRRGQLIRVLYCEIGRILSHLLNVTTQAMDVG 126
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE SG+RMHAA++R GGV++DLP+
Sbjct: 127 ALTPPLWGFEEREKLMVFYERASGSRMHAAFFRVGGVHQDLPQ----------------- 169
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L+D IE + + F K +D+ + LLT NRI+KQR V IGVV + A GF+G
Sbjct: 170 --------KLVDDIEAWCDPFLKVVDDLDRLLTANRIFKQRNVDIGVVPLKEAWEWGFSG 221
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG WDLRK QPYE Y ++FDIPIGKNGD YDRYL+R+EEMRQS +I+KQCI+
Sbjct: 222 VMVRGSGAAWDLRKSQPYECYAEMDFDIPIGKNGDCYDRYLIRMEEMRQSVRIMKQCIQK 281
Query: 579 LRS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
L + KGPV+ +NK+ P R MK +ME LIHHFKL+TEG +VP GE+Y+ VE PKGE
Sbjct: 282 LNAADGKGPVVVEDNKVAPPRRGEMKRSMEALIHHFKLYTEGVHVPAGEVYAAVEAPKGE 341
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YL+SDG NKPY+ KIR+PGFAHLQ++ + GH+++DV I+G+ DIVFGE+DR
Sbjct: 342 FGVYLISDGTNKPYKCKIRAPGFAHLQAMDHICRGHLLADVSAILGSLDIVFGEVDR 398
>gi|316933894|ref|YP_004108876.1| NADH dehydrogenase I subunit D [Rhodopseudomonas palustris DX-1]
gi|315601608|gb|ADU44143.1| NADH dehydrogenase I, D subunit [Rhodopseudomonas palustris DX-1]
Length = 402
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 230/416 (55%), Positives = 309/416 (74%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 12 VRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEAKTYLQAIPYF 71
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +A+EKLL I +P RAQ IRV++ EI R+L+HL+ + + ++D+GA
Sbjct: 72 DRLDYVAPMNQEHAFCLAVEKLLGIAVPRRAQLIRVLYAEIGRILSHLLNVTTQAMDVGA 131
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHAAY+R GGV++DLP
Sbjct: 132 LTPPLWGFEEREKLMMFYERASGSRMHAAYFRVGGVHQDLPP------------------ 173
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I+ + + FP +D+ + LL+DNRI+KQR V IGVV+ ++A + GF+G
Sbjct: 174 -------KLIDDIDAWCDAFPAVVDDLDRLLSDNRIFKQRNVDIGVVTLDQAWAWGFSGV 226
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLRK QPYE Y L+F++PIGKNGD YDRY +R+EEMRQS +I+KQCI L
Sbjct: 227 MVRGSGAAWDLRKSQPYECYAELDFEVPIGKNGDCYDRYHIRMEEMRQSVRIMKQCIARL 286
Query: 580 RS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
R+ +GPV+ +++KI P R MK +ME LIHHFKL+TEGF+VP GE+Y VE PKGEF
Sbjct: 287 RAPDGQGPVVVDDHKIFPPRRGEMKRSMEALIHHFKLYTEGFHVPAGEVYVAVEAPKGEF 346
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G++LVSDG NKPY+ K+R+PGFAHLQ++ + GH+++DV I+G+ DIVFGE+DR
Sbjct: 347 GVFLVSDGTNKPYKCKVRAPGFAHLQAMDFLSRGHLLADVSAILGSLDIVFGEVDR 402
>gi|302511157|ref|XP_003017530.1| hypothetical protein ARB_04412 [Arthroderma benhamiae CBS 112371]
gi|291181101|gb|EFE36885.1| hypothetical protein ARB_04412 [Arthroderma benhamiae CBS 112371]
Length = 493
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 238/435 (54%), Positives = 299/435 (68%), Gaps = 47/435 (10%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E +TY+Q+LPY
Sbjct: 86 KIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYMQALPY 145
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLNI+IP RA++IR MF EITR+LNHLM + SH++D+G
Sbjct: 146 FDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKWIRTMFGEITRILNHLMSVLSHAMDVG 205
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV++D+P
Sbjct: 206 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPL----------------- 248
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E LLTDNRIWK R VG+GVV+ AL+ GF+G
Sbjct: 249 --------GLLDDIYQWATQFADRIDETEELLTDNRIWKARTVGVGVVTAAEALNYGFSG 300
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 301 VMLRGSGVPWDIRKSQPYDAYGQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNN 360
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + KI+ P RI MK NME LIHHF LFT+G+ VP GE YS +E PKGE
Sbjct: 361 MPA--GPVRVEDYKISPPPRIAMKENMEALIHHFLLFTKGYTVPPGETYSAIEAPKGEMA 418
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQ-------------- 684
++LVSDG+ +PYR KIR+PGFAHL ++ GH+++D V IIGT
Sbjct: 419 VFLVSDGSERPYRCKIRAPGFAHLGCFDQLSRGHLLADAVAIIGTHVSSKCDNEIQTNVC 478
Query: 685 ------DIVFGEIDR 693
D+VFGE+DR
Sbjct: 479 FFAGTMDLVFGEVDR 493
>gi|315122723|ref|YP_004063212.1| NADH dehydrogenase subunit D [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313496125|gb|ADR52724.1| NADH dehydrogenase subunit D [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 396
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 232/417 (55%), Positives = 307/417 (73%), Gaps = 27/417 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ + +NFGPQHPAAHGVLRLILEL+GEVV + DPHIGLLHR TEKL E +T+LQ++PY
Sbjct: 5 KIRGFTMNFGPQHPAAHGVLRLILELDGEVVERVDPHIGLLHRGTEKLIETKTFLQAVPY 64
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHAY +A+EKLL I+IPIR Q IRV++ EI R+L+HL+ + + ++D+G
Sbjct: 65 FDRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVG 124
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE SG+RMHAAY+RPGGV++D+P +
Sbjct: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPPV---------------- 168
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L++ I + + FP +D+ LLT++RI+KQR V IG V E A +GF+G
Sbjct: 169 ---------LVEDIGCWCDSFPAVLDDISGLLTESRIFKQRNVDIGTVKLEDAWGLGFSG 219
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG WDLRK QPYE Y L+FDIPIGK GD YDRYLVR+ EMR+S KII+QC+
Sbjct: 220 VMIRGSGAAWDLRKSQPYECYAELDFDIPIGKKGDCYDRYLVRMMEMRESIKIIRQCVDR 279
Query: 579 LRSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
L + GPV ++++KI P R +MK +ME LIHHFKL+TEG++VP+GE+Y+ VE PKGE
Sbjct: 280 LLGDNRVGPVFASDSKIIPPRRADMKRSMEALIHHFKLYTEGYHVPVGEVYAAVEAPKGE 339
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YLVSDG+NKPYR +IR+PGFAHLQ++ + GH ++DV I+G+ DIVFGE+DR
Sbjct: 340 FGVYLVSDGSNKPYRCRIRAPGFAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
>gi|395765856|ref|ZP_10446447.1| NADH-quinone oxidoreductase subunit D [Bartonella sp. DB5-6]
gi|395410861|gb|EJF77408.1| NADH-quinone oxidoreductase subunit D [Bartonella sp. DB5-6]
Length = 396
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 229/418 (54%), Positives = 305/418 (72%), Gaps = 27/418 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
+ ++++ +NFGPQHPAAHGVLR++LEL+GEVV + DPHIGLLHR TEKL E +TYLQ+ P
Sbjct: 4 VNVRNFNINFGPQHPAAHGVLRMVLELDGEVVERVDPHIGLLHRGTEKLMETKTYLQAGP 63
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y+DRLDYV+ M EHA+V+AIEKLL +++P R Q IRV+F EI R+LNHL+ + + ++D+
Sbjct: 64 YLDRLDYVAPMNQEHAFVLAIEKLLGVEVPKRGQLIRVLFSEIGRILNHLLNVTTQAMDV 123
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GA+ L+ F +RE L+ YE GAR+HA Y+RPGGV++DLPE
Sbjct: 124 GALTPPLWGFEQREKLMIFYERACGARLHANYFRPGGVHQDLPE---------------- 167
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
SL++ I +F + F + + + L+T NRI+KQR V IG+VS + A + GF+
Sbjct: 168 ---------SLIEDIGNFIDPFLLALGKLDALVTPNRIFKQRNVDIGIVSIDEAWARGFS 218
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
G M+RG+GV WDLRK QPYE Y+ ++FDIP+GKN D YDRYL+R+EEMRQS KI++QC+
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYDEMDFDIPVGKNSDCYDRYLIRMEEMRQSAKIMRQCVD 278
Query: 578 WL--RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
L GPV S N KI P R MKS+ME LIHHFKL+TEGF+ P GE+Y VE PKG
Sbjct: 279 RLLGAEKSGPVSSLNRKIVPPKRCEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFG+YL+SDG NKPYR+K+R+PGFAHLQ++ + GHM++D I+G+ DIVFGE+DR
Sbjct: 339 EFGVYLISDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAILGSIDIVFGEVDR 396
>gi|367473653|ref|ZP_09473201.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
(NDH-1, chain D) [Bradyrhizobium sp. ORS 285]
gi|365274049|emb|CCD85669.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
(NDH-1, chain D) [Bradyrhizobium sp. ORS 285]
Length = 398
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 233/416 (56%), Positives = 306/416 (73%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 8 LRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIESKTYLQAMPYF 67
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +A E+LL I++P R Q IRV++ EI RLL+HL+ + + ++D+GA
Sbjct: 68 DRLDYVAPMNQEHAFCLAAERLLGIEVPRRGQLIRVLYSEIGRLLSHLLNVTTQAMDVGA 127
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHA Y+R GGV++DLP
Sbjct: 128 LTPPLWGFEEREKLMVFYERASGSRMHANYFRIGGVHQDLPT------------------ 169
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I+ F + F K +D+ + LLT NRI+KQR V IGVV+ ++A GF+G
Sbjct: 170 -------KLIDDIDAFCDPFLKVVDDLDQLLTGNRIFKQRNVDIGVVTLKQAWEWGFSGV 222
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLRK QPY++Y ++FDIPIGKNGD YDRYL+R+EEMRQS +I+KQCI L
Sbjct: 223 MVRGSGAAWDLRKSQPYDVYAEMDFDIPIGKNGDCYDRYLIRMEEMRQSVRIMKQCIAKL 282
Query: 580 RS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
R+ +GPV+ +NKI P R MK +ME LIHHFKL+TEG +VP GEIY+ VE PKGEF
Sbjct: 283 RAPDGQGPVLITDNKIAPPRRGEMKRSMEALIHHFKLYTEGVHVPAGEIYAAVEAPKGEF 342
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG NKPY+ KIR+PGFAHLQ++ + GH+++DV I+G+ DIVFGE+DR
Sbjct: 343 GVYLVSDGTNKPYKCKIRAPGFAHLQAMDFLCRGHLLADVSAILGSLDIVFGEVDR 398
>gi|359407446|ref|ZP_09199923.1| NADH dehydrogenase I, D subunit [SAR116 cluster alpha
proteobacterium HIMB100]
gi|356677485|gb|EHI49829.1| NADH dehydrogenase I, D subunit [SAR116 cluster alpha
proteobacterium HIMB100]
Length = 392
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 232/416 (55%), Positives = 305/416 (73%), Gaps = 27/416 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
++I+ LNFGPQHPAAHGVLRL+LE++GE++ +ADPH+GLLHR TEKL E +TYLQ+LP
Sbjct: 4 MQIRPLTLNFGPQHPAAHGVLRLVLEMDGEIIDRADPHVGLLHRGTEKLIENKTYLQALP 63
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y DRLDYVS M EHA+ +A+EK LNI +P RAQ+IRV++ EI R+LNHL+ + + ++D+
Sbjct: 64 YFDRLDYVSPMNQEHAWALAVEKALNIDVPKRAQHIRVLYCEIGRILNHLLNLTTFAIDV 123
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GAM LL+ F ERE L++ YE SGAR+HAAY+RPGGV++DLP+
Sbjct: 124 GAMTPLLWGFEERETLMEFYERASGARLHAAYFRPGGVHQDLPD---------------- 167
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
L D I + + FP I + ETLLT+NRI+KQR V IGV+S E AL +G +
Sbjct: 168 ---------GLTDDILTWADNFPSFIADLETLLTNNRIFKQRTVDIGVLSTEEALDLGMS 218
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GP+LR +G WDLRK QPY+ Y ++FDIP+G GD Y RYLVRIEEM+QS +IIKQ I+
Sbjct: 219 GPVLRATGHAWDLRKAQPYDCYAEMDFDIPVGTTGDCYARYLVRIEEMKQSLRIIKQSIE 278
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+ GPV++ NNK+T P R MK +ME LIHHFKL+TEGF++P G+ Y+ VE PKGEF
Sbjct: 279 TMPG--GPVLAENNKVTPPRRGEMKQSMEALIHHFKLYTEGFHLPEGDSYTAVEAPKGEF 336
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLV+DG NKPYR ++R+PG+ + ++ M GHM++D V IIG+ DIVFGEIDR
Sbjct: 337 GVYLVADGTNKPYRARLRAPGYYFMAAVDYMSRGHMLADSVAIIGSLDIVFGEIDR 392
>gi|91977354|ref|YP_570013.1| NADH dehydrogenase subunit D [Rhodopseudomonas palustris BisB5]
gi|123735350|sp|Q135X7.1|NUOD_RHOPS RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|91683810|gb|ABE40112.1| NADH dehydrogenase I, D subunit [Rhodopseudomonas palustris BisB5]
Length = 416
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 237/416 (56%), Positives = 308/416 (74%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 26 LRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEHKTYLQAIPYF 85
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +A+EKLL I +P RAQ IRV++ EI R+L+HL+ + + ++D+GA
Sbjct: 86 DRLDYVAPMNQEHAFCLAVEKLLGIAVPRRAQLIRVLYCEIGRILSHLLNVTTQAMDVGA 145
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHAAY+R GGV++DLP PQ
Sbjct: 146 LTPPLWGFEEREKLMMFYERASGSRMHAAYFRVGGVHQDLP---PQ-------------- 188
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+ I+ + + F + +D+ ETLLTDNRI+KQR V IGVV+ E+A GF+G
Sbjct: 189 --------LVADIDSWCDSFIQVVDDLETLLTDNRIFKQRNVDIGVVTLEQAWEWGFSGV 240
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLRK QPYE Y ++FDIPIGKNGD YDRY +R+EEMRQS +I+KQCI L
Sbjct: 241 MVRGSGAAWDLRKSQPYECYAEMDFDIPIGKNGDCYDRYCLRVEEMRQSIRIMKQCIAKL 300
Query: 580 RS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
R+ +G V ++NKI P R MK +ME LIHHFKL+TEGF VP GE+Y VE PKGEF
Sbjct: 301 RAPDGQGRVAIDDNKIFPPRRGEMKRSMESLIHHFKLYTEGFRVPEGEVYVAVEAPKGEF 360
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG+NKPY+ KIR+PGFAHLQ++ + GH+++DV I+G+ DIVFGE+DR
Sbjct: 361 GVYLVSDGSNKPYKCKIRAPGFAHLQAMDFICRGHLLADVSAILGSLDIVFGEVDR 416
>gi|418055568|ref|ZP_12693622.1| NAD(P)H-quinone oxidoreductase subunit H [Hyphomicrobium
denitrificans 1NES1]
gi|353209846|gb|EHB75248.1| NAD(P)H-quinone oxidoreductase subunit H [Hyphomicrobium
denitrificans 1NES1]
Length = 396
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 234/417 (56%), Positives = 304/417 (72%), Gaps = 27/417 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI+++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TY+Q++ Y
Sbjct: 5 EIRNFNINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEHKTYMQAIGY 64
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +A E+LL I +P RAQ IRV++ EI RLL+HL+ + + ++D+G
Sbjct: 65 FDRLDYVAPMNQEHAFCLAAERLLGISVPRRAQLIRVLYSEIGRLLSHLLNVTTQAMDVG 124
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE SGARMHA Y+R GGV++DLPE
Sbjct: 125 ALTPPLWGFEEREKLMVFYERASGARMHAKYFRIGGVHQDLPE----------------- 167
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L+D I F + F K +D+ + LLT+NRI+KQR V IGVVS + A + GF+G
Sbjct: 168 --------KLIDDIYAFCDPFLKVVDDIDVLLTENRIFKQRNVDIGVVSLDDAFAWGFSG 219
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG WDLRK QPYE Y L+FDIP+GKNGD YDRYL+R++EMR+S KI+KQC +
Sbjct: 220 VMVRGSGAAWDLRKAQPYECYADLDFDIPVGKNGDCYDRYLIRMQEMRESTKIMKQCCEL 279
Query: 579 LR--SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
L+ S +GP + N K+ P R MK +ME LIHHFKL+TEGF+VP G++Y+ VE PKGE
Sbjct: 280 LKSASGQGPHVVENKKVVPPKRGEMKRSMEALIHHFKLYTEGFHVPAGDVYAAVEAPKGE 339
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YLV+DG+NKPYR KIR+PGF HL ++ M GHM++DV I+G+ DIVFGEIDR
Sbjct: 340 FGVYLVADGSNKPYRCKIRAPGFPHLAAMDFMNRGHMLADVSAILGSLDIVFGEIDR 396
>gi|451940719|ref|YP_007461357.1| NADH dehydrogenase subunit D [Bartonella australis Aust/NH1]
gi|451900106|gb|AGF74569.1| NADH dehydrogenase subunit D [Bartonella australis Aust/NH1]
Length = 396
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 231/418 (55%), Positives = 306/418 (73%), Gaps = 27/418 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
+ ++++ +NFGPQHPAAHGVLR++LEL+GEVV + DPHIGLLHR TEKL E +TYLQ+ P
Sbjct: 4 VNVRNFNINFGPQHPAAHGVLRMVLELDGEVVERVDPHIGLLHRGTEKLMETKTYLQAGP 63
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y+DRLDYV+ M EHA+V+AIEKLL +++P R Q IRV+F EI R+LNHL+ + + ++D+
Sbjct: 64 YLDRLDYVAPMNQEHAFVLAIEKLLGVEVPKRGQLIRVLFSEIGRILNHLLNVTTQAMDV 123
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GA+ L+ F +RE L+ YE GAR+HA Y+RPGGV++DLPE
Sbjct: 124 GALTPPLWGFEQREKLMIFYERACGARLHANYFRPGGVHQDLPE---------------- 167
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
SL++ I +F + F + + + L+T NRI+KQR V IGVVS E A + GF+
Sbjct: 168 ---------SLIEDIGNFIDPFLVALGKLDALVTPNRIFKQRNVDIGVVSIEEAWARGFS 218
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
G M+RG+GV WDLRK QPYE Y+ + FDIP+GKN D YDRYL+R+EEMRQS KI++QC+
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYDEMEFDIPVGKNSDCYDRYLIRMEEMRQSAKIMRQCVD 278
Query: 578 WLRSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
L S++ PV S + KI P R MKS+ME LIHHFKL+TEGF+ P GE+Y VE PKG
Sbjct: 279 RLLSSEKNTPVSSLDRKIVPPKRSEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFG+YLVSDG NKPYR+K+R+PGFAHLQ++ + GHM++D I+G+ DIVFGE+DR
Sbjct: 339 EFGVYLVSDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAILGSIDIVFGEVDR 396
>gi|126461945|ref|YP_001043059.1| NADH dehydrogenase subunit D [Rhodobacter sphaeroides ATCC 17029]
gi|429208414|ref|ZP_19199666.1| NADH-ubiquinone oxidoreductase chain D [Rhodobacter sp. AKP1]
gi|218534434|sp|A3PIX1.1|NUOD_RHOS1 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|126103609|gb|ABN76287.1| NADH dehydrogenase I, D subunit [Rhodobacter sphaeroides ATCC
17029]
gi|428188669|gb|EKX57229.1| NADH-ubiquinone oxidoreductase chain D [Rhodobacter sp. AKP1]
Length = 402
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 230/415 (55%), Positives = 304/415 (73%), Gaps = 26/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 14 KLRNFNINFGPQHPAAHGVLRLVLELDGEVVERCDPHIGLLHRGTEKLMESRTYLQNLPY 73
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +AIE+L + +P RA IRV++ EI R+LNHL+ + + ++D+G
Sbjct: 74 FDRLDYVAPMNQEHAWCLAIERLTGVAVPRRASLIRVLYSEIGRVLNHLLNVTTQAMDVG 133
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE SGAR+HAAY+RPGGV++DL
Sbjct: 134 ALTPPLWGFEEREKLMVFYERASGARLHAAYFRPGGVHQDLTP----------------- 176
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L++ IE++ FPK +D+ + LLT+NRI+KQR V IG++S + L GF+G
Sbjct: 177 --------RLIEDIEEWAEHFPKVLDDLDELLTENRIFKQRNVDIGIISEKDILDWGFSG 228
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG WDLR+ QPYE Y+ +F IP+GKNGD YDRYL R+EEMRQS +II+QC+
Sbjct: 229 VMVRGSGFAWDLRRSQPYECYDEFDFQIPVGKNGDCYDRYLCRMEEMRQSTRIIQQCLAK 288
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR KG V++ K+T P R MK++ME LIHHFKL+TEGF+VP GE+Y+ VE PKGEFG
Sbjct: 289 LRVEKGDVLARG-KLTPPPRGEMKTSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGEFG 347
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLV+DG N+PYR KIR+PGF HLQ++ + GH+++DV IIGT D+VFGEIDR
Sbjct: 348 VYLVADGTNRPYRAKIRAPGFLHLQAIDYIAKGHLLADVSAIIGTLDVVFGEIDR 402
>gi|426332419|ref|XP_004027803.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Gorilla gorilla gorilla]
Length = 457
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 236/408 (57%), Positives = 300/408 (73%), Gaps = 27/408 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+K+ LNFGPQHPAAHGVLRL++EL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 77 VKNMTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 136
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITRLLNH+M + +H+LD+GA
Sbjct: 137 DRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGA 196
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 197 MTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPL------------------ 238
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I F+ F +DE E LLT+NRIW+ R + IGVV+ E AL+ GF+G
Sbjct: 239 -------GLMDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGV 291
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ + FD+P+G GD YDRYL R+EEMRQS +II QC+
Sbjct: 292 MLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLN-- 349
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 350 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 409
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIV 687
YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGT+ IV
Sbjct: 410 YLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTRPIV 457
>gi|77463073|ref|YP_352577.1| NADH dehydrogenase subunit D [Rhodobacter sphaeroides 2.4.1]
gi|221638929|ref|YP_002525191.1| NADH dehydrogenase subunit D [Rhodobacter sphaeroides KD131]
gi|123592235|sp|Q3J3F8.1|NUOD_RHOS4 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|77387491|gb|ABA78676.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain D [Rhodobacter
sphaeroides 2.4.1]
gi|221159710|gb|ACM00690.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain D [Rhodobacter
sphaeroides KD131]
Length = 404
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 230/415 (55%), Positives = 304/415 (73%), Gaps = 26/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 16 KLRNFNINFGPQHPAAHGVLRLVLELDGEVVERCDPHIGLLHRGTEKLMESRTYLQNLPY 75
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +AIE+L + +P RA IRV++ EI R+LNHL+ + + ++D+G
Sbjct: 76 FDRLDYVAPMNQEHAWCLAIERLTGVAVPRRASLIRVLYSEIGRVLNHLLNVTTQAMDVG 135
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE SGAR+HAAY+RPGGV++DL
Sbjct: 136 ALTPPLWGFEEREKLMVFYERASGARLHAAYFRPGGVHQDLTP----------------- 178
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L++ IE++ FPK +D+ + LLT+NRI+KQR V IG++S + L GF+G
Sbjct: 179 --------RLIEDIEEWAEHFPKVLDDLDELLTENRIFKQRNVDIGIISEKDILDWGFSG 230
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG WDLR+ QPYE Y+ +F IP+GKNGD YDRYL R+EEMRQS +II+QC+
Sbjct: 231 VMVRGSGFAWDLRRSQPYECYDEFDFQIPVGKNGDCYDRYLCRMEEMRQSTRIIQQCLAK 290
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR KG V++ K+T P R MK++ME LIHHFKL+TEGF+VP GE+Y+ VE PKGEFG
Sbjct: 291 LRVEKGDVLARG-KLTPPPRGEMKTSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGEFG 349
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLV+DG N+PYR KIR+PGF HLQ++ + GH+++DV IIGT D+VFGEIDR
Sbjct: 350 VYLVADGTNRPYRAKIRAPGFLHLQAIDYIAKGHLLADVSAIIGTLDVVFGEIDR 404
>gi|410221796|gb|JAA08117.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Pan troglodytes]
gi|410301254|gb|JAA29227.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Pan troglodytes]
gi|410348764|gb|JAA40986.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Pan troglodytes]
Length = 457
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 236/408 (57%), Positives = 300/408 (73%), Gaps = 27/408 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+K+ LNFGPQHPAAHGVLRL++EL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 77 VKNMTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 136
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITRLLNH+M + +H+LD+GA
Sbjct: 137 DRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGA 196
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 197 MTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPL------------------ 238
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I F+ F +DE E LLT+NRIW+ R + IGVV+ E AL+ GF+G
Sbjct: 239 -------GLMDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGV 291
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ + FD+P+G GD YDRYL R+EEMRQS +II QC+
Sbjct: 292 MLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLN-- 349
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 350 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 409
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIV 687
YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGT+ IV
Sbjct: 410 YLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTRPIV 457
>gi|88608146|ref|YP_506448.1| NADH dehydrogenase subunit D [Neorickettsia sennetsu str. Miyayama]
gi|123491783|sp|Q2GDJ8.1|NUOD_NEOSM RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|88600315|gb|ABD45783.1| NADH dehydrogenase I, D subunit [Neorickettsia sennetsu str.
Miyayama]
Length = 388
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 231/410 (56%), Positives = 299/410 (72%), Gaps = 27/410 (6%)
Query: 284 KLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLD 343
+LNFGPQHPAAHGVLRLI++L+GE V + DPHIG LHR TEKL E +TYLQ+LPY DRLD
Sbjct: 6 ELNFGPQHPAAHGVLRLIMQLDGETVERLDPHIGFLHRGTEKLIEHKTYLQALPYFDRLD 65
Query: 344 YVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVL 403
YVS M EHAY + +EKLL I +P RAQY+RV+F EITR+LNHL+ + +H+LD+GAM L
Sbjct: 66 YVSPMAQEHAYSLCVEKLLGITVPPRAQYLRVIFVEITRILNHLLNVTTHALDVGAMNPL 125
Query: 404 LYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNEN 463
+ F ERE +L YE SGAR HAAY RPGG+ D+P+ + +
Sbjct: 126 FWMFEEREKMLSFYEKASGARFHAAYIRPGGLAADIPDGLDE------------------ 167
Query: 464 RQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRG 523
++ F+E FT++ +D+ +LTDN I+KQRLV IG VS A+++GF+GP+LR
Sbjct: 168 ---EIMSFLESFTHK----LDDVADVLTDNPIFKQRLVDIGKVSKREAVALGFSGPVLRA 220
Query: 524 SGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNK 583
SGV WDLRK QPYE+Y L+F IP+G GDSYDRYLVR+ EM +S KIIKQCI L +
Sbjct: 221 SGVPWDLRKSQPYEVYESLDFAIPVGSCGDSYDRYLVRMAEMYESVKIIKQCIDKL--PE 278
Query: 584 GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVS 643
GPV+ ++ K+ P+R MK++ME LIHHFKL++EG++VP GE Y VE PKGEFG+Y+VS
Sbjct: 279 GPVVVDDRKVAPPSRAEMKTSMEALIHHFKLYSEGYHVPEGETYFAVESPKGEFGVYIVS 338
Query: 644 DGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
DG NKPYR +IR+PGF HLQ+L + H+++DV I+G+ DIVFGE+DR
Sbjct: 339 DGTNKPYRCRIRAPGFVHLQALDTLSRKHLLADVPAILGSLDIVFGEVDR 388
>gi|92117741|ref|YP_577470.1| NADH dehydrogenase subunit D [Nitrobacter hamburgensis X14]
gi|122417681|sp|Q1QL87.1|NUOD2_NITHX RecName: Full=NADH-quinone oxidoreductase subunit D 2; AltName:
Full=NADH dehydrogenase I subunit D 2; AltName:
Full=NDH-1 subunit D 2
gi|91800635|gb|ABE63010.1| NADH dehydrogenase subunit D [Nitrobacter hamburgensis X14]
Length = 402
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 234/416 (56%), Positives = 306/416 (73%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL EQ+TYLQ++PY
Sbjct: 12 MRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEQKTYLQAIPYF 71
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +A EKLL I +P R Q IRV++ EI R+L+HL+ + + +LD+GA
Sbjct: 72 DRLDYVAPMNQEHAFCLAAEKLLGIAVPRRGQLIRVLYCEIGRILSHLLNVTTQALDVGA 131
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHAAY+R GGV++DLP
Sbjct: 132 LTPPLWGFEEREKLMMFYERASGSRMHAAYFRIGGVHQDLPP------------------ 173
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I+ + + F + + + + LLTD+RI+KQR V IGVVS ++A GF+G
Sbjct: 174 -------KLIDDIDAWCDPFLQVVADLDALLTDSRIFKQRNVDIGVVSLKQAWEWGFSGV 226
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLRK QPYE Y ++FDIPIGKNGD YDRYL+R+EEMRQS +I+KQCI L
Sbjct: 227 MVRGSGAAWDLRKAQPYECYAEMDFDIPIGKNGDCYDRYLIRMEEMRQSARIMKQCIAKL 286
Query: 580 RS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
R+ +GPV +NKI P R MK +ME LIHHFKL+TEGF VP GE+Y+ VE PKGEF
Sbjct: 287 RAADGQGPVAVEDNKIFPPRRAEMKRSMEALIHHFKLYTEGFRVPAGEVYAAVEAPKGEF 346
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G++LVSDG+NKPY+ KIR+PGFAHLQ++ + GH+++DV I+G+ DIVFGE+DR
Sbjct: 347 GVFLVSDGSNKPYKCKIRAPGFAHLQAMDFICRGHLLADVSAILGSLDIVFGEVDR 402
>gi|424890847|ref|ZP_18314446.1| NADH dehydrogenase I, D subunit [Rhizobium leguminosarum bv.
trifolii WSM2012]
gi|393173065|gb|EJC73110.1| NADH dehydrogenase I, D subunit [Rhizobium leguminosarum bv.
trifolii WSM2012]
Length = 396
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 234/416 (56%), Positives = 304/416 (73%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 6 VRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIETKTYLQALPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHAY MA+EKLL ++IPIR Q IRV++ EI R+L+HL+ + + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAYAMAVEKLLGLEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHAAY RPGGV++DLPE
Sbjct: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYVRPGGVHQDLPE------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+ I D+ + F K +D+ + LLT NRI+KQR V IGVVS E + GF+G
Sbjct: 168 -------QLVQDIGDWCDPFLKALDDIDNLLTGNRIFKQRNVDIGVVSLEDCWAWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLR+ QPYE Y+ L FDIPIGKNGD+YDRYL+R+ EMR+S +I+KQC+ L
Sbjct: 221 MVRGSGAAWDLRRAQPYECYSDLEFDIPIGKNGDNYDRYLIRMIEMRESVRIMKQCVNRL 280
Query: 580 RSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
S+ GP S + K+ P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGEF
Sbjct: 281 LSDAKTGPFSSIDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG NKPYR KIR+PG+AHLQ++ M GH ++DV ++G+ DIVFGE+DR
Sbjct: 341 GVYLVSDGTNKPYRCKIRAPGYAHLQAMDFMCRGHQLADVAAVLGSLDIVFGEVDR 396
>gi|259418627|ref|ZP_05742544.1| NADH dehydrogenase (quinone), d subunit [Silicibacter sp.
TrichCH4B]
gi|259344849|gb|EEW56703.1| NADH dehydrogenase (quinone), d subunit [Silicibacter sp.
TrichCH4B]
Length = 405
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 234/415 (56%), Positives = 302/415 (72%), Gaps = 26/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 17 KIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNLPY 76
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +AIEKL +++P RAQ IRV++ EI R+LNHL+ + + ++D+G
Sbjct: 77 FDRLDYVAPMNQEHAWCLAIEKLTGVEVPRRAQLIRVLYSEIGRILNHLLNVTTQAMDVG 136
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE GAR+HAAY+RPGGV++DLP+
Sbjct: 137 ALTPPLWGFEEREKLMIFYERACGARLHAAYFRPGGVHQDLPD----------------- 179
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I+ + FPK ID+ + LLT+NRI+KQR IGVV+ + GF+G
Sbjct: 180 --------ELLDDIDLWAMEFPKVIDDIDGLLTENRIFKQRNCDIGVVTEDDIQKYGFSG 231
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG+ WDLR+ QPYE Y+ F IP+GKNGD YDRYLVR+EEMRQS II+Q I
Sbjct: 232 VMVRGSGLAWDLRRAQPYECYDEFEFQIPVGKNGDCYDRYLVRMEEMRQSLSIIRQAIAK 291
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR G V++ KI+ P R +MK++ME LIHHFKL+TEGF+VP GE+Y+ VE PKGEFG
Sbjct: 292 LREATGDVMA-RGKISPPKRSDMKTSMESLIHHFKLYTEGFHVPEGEVYAAVEAPKGEFG 350
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLV+DG NKPYR K+R+PGF HLQ++ + GH ++DV IIGT DIVFGEIDR
Sbjct: 351 VYLVADGTNKPYRAKLRAPGFLHLQAMDYVAKGHQLADVAAIIGTMDIVFGEIDR 405
>gi|400599247|gb|EJP66951.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Beauveria bassiana
ARSEF 2860]
Length = 474
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 229/415 (55%), Positives = 297/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E +TYLQ+LPY
Sbjct: 87 KVRHYTVNFGPQHPAAHGVLRLILELNGEEIIRADPHVGLLHRGTEKLIEYKTYLQALPY 146
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLN++IP RA+YIR +F EITR+LNHLM + SH++D+G
Sbjct: 147 FDRLDYVSMMTNEQCFALAVEKLLNVEIPDRAKYIRTLFGEITRILNHLMSVLSHAMDVG 206
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+H+AY RPGGV++D+P
Sbjct: 207 ALTPFLWGFEEREKLMEFYERVSGARLHSAYVRPGGVHQDIPV----------------- 249
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E +LTDNRIW +RL G+GV+ A+++ FTG
Sbjct: 250 --------GLLDDIYQWATQFGDRIDETEEMLTDNRIWIERLRGVGVLPAREAINLSFTG 301
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y+ + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 302 VMLRGSGVPWDIRKSQPYDAYDKVEFDVPVGTNGDCYDRYLCRMEEFRQSLRIIHQCLNQ 361
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + KI+ P R MK NME LIHHF L+T+G+ VP GE YS +E PKGE G
Sbjct: 362 MPA--GPVRVEDYKISPPPRSAMKENMEALIHHFLLYTKGYAVPPGETYSAIEAPKGEMG 419
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDG+ +PYR IR+PGFAHL + GH+++D V +IGT D+VFGE+DR
Sbjct: 420 VYVVSDGSERPYRCHIRAPGFAHLGGFDHVAKGHLLADAVAVIGTMDLVFGEVDR 474
>gi|260898743|ref|NP_001159631.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial isoform 2 precursor [Homo sapiens]
Length = 457
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 236/408 (57%), Positives = 300/408 (73%), Gaps = 27/408 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+K+ LNFGPQHPAAHGVLRL++EL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 77 VKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 136
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITRLLNH+M + +H+LD+GA
Sbjct: 137 DRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGA 196
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 197 MTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPL------------------ 238
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I F+ F +DE E LLT+NRIW+ R + IGVV+ E AL+ GF+G
Sbjct: 239 -------GLMDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGV 291
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ + FD+P+G GD YDRYL R+EEMRQS +II QC+
Sbjct: 292 MLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLN-- 349
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 350 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 409
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIV 687
YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGT+ IV
Sbjct: 410 YLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTRPIV 457
>gi|403530459|ref|YP_006664988.1| NADH dehydrogenase subunit D [Bartonella quintana RM-11]
gi|403232531|gb|AFR26274.1| NADH dehydrogenase subunit D [Bartonella quintana RM-11]
Length = 396
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 229/418 (54%), Positives = 308/418 (73%), Gaps = 27/418 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
+ ++++ +NFGPQHPAAHGVLR++LEL+GEVV + DPHIGLLHR TEKL E +TYLQ++P
Sbjct: 4 VNVRNFNINFGPQHPAAHGVLRMVLELDGEVVERVDPHIGLLHRGTEKLMETKTYLQAVP 63
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y+DRLDYV+ M EHA+V+AIEKLL +++P R Q IRV+F EI R+LNHL+ + + ++D+
Sbjct: 64 YLDRLDYVAPMNQEHAFVLAIEKLLGVEVPKRGQLIRVLFSEIGRILNHLLNVTTQAMDV 123
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GA+ L+ F +RE L+ YE GAR+HA Y+RPGGV++DLPE
Sbjct: 124 GALTPPLWGFEQRERLMIFYERACGARLHANYFRPGGVHQDLPE---------------- 167
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
SL++ I F + F ++ + L+T NRI+KQR V IGV+S + A + GF+
Sbjct: 168 ---------SLIEDIGHFIDPFLISLSRLDALVTPNRIFKQRNVDIGVISIDEAWARGFS 218
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCI- 576
G M+RG+GV WDLRK QPYE Y+ + FDIP+GKN D YDRYL+R+EEMRQS +I++QC+
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYDEMEFDIPVGKNSDCYDRYLIRMEEMRQSARIMRQCVD 278
Query: 577 KWLRSNK-GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
+ L S K GPV S N+K+ P R MKS+ME LIHHFKL+TEGF+ P GE+Y VE PKG
Sbjct: 279 RLLGSEKSGPVSSLNHKVVPPKRSEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFG+YL+SDG NKPYR+K+R+PGFAHLQ++ + GHM++D I+G+ DIVFGE+DR
Sbjct: 339 EFGVYLISDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAILGSIDIVFGEVDR 396
>gi|402486154|ref|ZP_10832986.1| NADH dehydrogenase subunit D [Rhizobium sp. CCGE 510]
gi|401814810|gb|EJT07140.1| NADH dehydrogenase subunit D [Rhizobium sp. CCGE 510]
Length = 396
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 234/416 (56%), Positives = 304/416 (73%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 6 VRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHAY MA+EKLL I IPIR Q IRV++ EI R+L+HL+ + + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAYAMAVEKLLGIDIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHAAY RPGGV++DLPE
Sbjct: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYVRPGGVHQDLPE------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+ I D+ + F K +D+ + LLT NRI+KQR V IGVVS E + GF+G
Sbjct: 168 -------QLVQDIGDWCDPFLKALDDIDNLLTGNRIFKQRNVDIGVVSLEDCWAWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLR+ QPYE Y+ L FDIPIGKNGD+YDRYL+R+ EMR+S +I+KQC+ L
Sbjct: 221 MVRGSGAAWDLRRAQPYECYSDLEFDIPIGKNGDNYDRYLIRMIEMRESVRIMKQCVNRL 280
Query: 580 RSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
S+ GP S + K+ P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGEF
Sbjct: 281 LSDAKTGPFSSIDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG+NKPYR KIR+PG+AHLQ++ M GH ++DV ++G+ DIVFGE+DR
Sbjct: 341 GVYLVSDGSNKPYRCKIRAPGYAHLQAMDFMCRGHQLADVAAVLGSLDIVFGEVDR 396
>gi|423715496|ref|ZP_17689720.1| NADH-quinone oxidoreductase subunit D [Bartonella elizabethae
F9251]
gi|395429623|gb|EJF95684.1| NADH-quinone oxidoreductase subunit D [Bartonella elizabethae
F9251]
Length = 396
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 232/418 (55%), Positives = 306/418 (73%), Gaps = 27/418 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
+ ++++ +NFGPQHPAAHGVLR++LEL+GEVV + DPHIGLLHR TEKL E +TYLQ+ P
Sbjct: 4 VNVRNFNINFGPQHPAAHGVLRMVLELDGEVVERVDPHIGLLHRGTEKLMETKTYLQAGP 63
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y+DRLDYV+ M EHA+V+AIEKLL IK+P R Q IRV+F EI R+LNHL+ + + ++D+
Sbjct: 64 YLDRLDYVAPMNQEHAFVLAIEKLLGIKVPKRGQLIRVLFSEIGRILNHLLNVTTQAMDV 123
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GA+ L+ F +RE L+ YE GAR+HA Y+RPGGV++DLPE
Sbjct: 124 GALTPPLWGFEQRERLMIFYERACGARLHANYFRPGGVHQDLPE---------------- 167
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
SL++ I +F + F ++ + + L+T NRI+KQR V IGVVS + A + GF+
Sbjct: 168 ---------SLVEDIGNFIDPFLVSLGKLDALVTPNRIFKQRNVDIGVVSIDEAWARGFS 218
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
G M+RG+GV WDLRK QPYE Y+ + FDIPIGKN D YDRYL+R+EEMRQS KI++QC++
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYDEMEFDIPIGKNSDCYDRYLIRMEEMRQSAKIMRQCVE 278
Query: 578 WLRSNKG--PVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
L + PV S + KI P R MKS+ME LIHHFKL+TEGF+ P GE+Y VE PKG
Sbjct: 279 RLLGTEKNEPVSSLDRKIVPPKRSEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFG+YLVSDG NKPYR+K+R+PGFAHLQ++ + GHM++D I+G+ DIVFGE+DR
Sbjct: 339 EFGVYLVSDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAILGSIDIVFGEVDR 396
>gi|319404256|emb|CBI77849.1| NADH dehydrogenase I, D subunit [Bartonella rochalimae ATCC
BAA-1498]
Length = 396
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 230/418 (55%), Positives = 306/418 (73%), Gaps = 27/418 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
+ ++++ +NFGPQHPAAHGVLR++LEL+GEVV + DPHIGLLHR TEKL E +TYLQ+ P
Sbjct: 4 VNVRNFNINFGPQHPAAHGVLRMVLELDGEVVERVDPHIGLLHRGTEKLMETKTYLQAGP 63
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y+DRLDYV+ M EHA+V+AIEKLL +++P R Q IRV+F EI R+LNHL+ + + ++D+
Sbjct: 64 YLDRLDYVAPMNQEHAFVLAIEKLLGVEVPKRGQLIRVLFSEIGRILNHLLNVTTQAMDV 123
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GA+ L+ F +RE L+ YE GAR+HA Y+RPGGV++DLPE
Sbjct: 124 GALTPPLWGFEQREKLMIFYERACGARLHANYFRPGGVHQDLPE---------------- 167
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
+L++ I +F + F +D+ + L+T NRI+KQR V IGVV+ A + F+
Sbjct: 168 ---------TLIEDIGNFIDPFLIALDKLDALITPNRIFKQRNVDIGVVNINEAWARAFS 218
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
G M+RG+GV WDLRK QPYE Y+ + FDIP+GKN D YDRYL+R+EEMRQS KI++QC+
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYDEMEFDIPVGKNSDCYDRYLIRMEEMRQSTKIMRQCVD 278
Query: 578 WLRSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
L S++ GPV S + K+ P R MKS+ME LIHHFKL+TEGF+ P GE+Y VE PKG
Sbjct: 279 RLLSSEKNGPVSSLDRKVVPPKRSEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFG+YLVSDG NKPYRIK+R+PGFAHLQ++ + GHM++D I+G+ DIVFGEIDR
Sbjct: 339 EFGVYLVSDGTNKPYRIKLRAPGFAHLQAMDFLTRGHMLADATAILGSIDIVFGEIDR 396
>gi|423713825|ref|ZP_17688085.1| NADH-quinone oxidoreductase subunit D [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395421631|gb|EJF87867.1| NADH-quinone oxidoreductase subunit D [Bartonella vinsonii subsp.
arupensis OK-94-513]
Length = 396
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 229/418 (54%), Positives = 306/418 (73%), Gaps = 27/418 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
+ ++++ +NFGPQHPAAHGVLR++LEL+GEVV + DPHIGLLHR TEKL E +TYLQ+ P
Sbjct: 4 VNVRNFNINFGPQHPAAHGVLRMVLELDGEVVERVDPHIGLLHRGTEKLMETKTYLQAGP 63
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y+DRLDYV+ M EHA+V+A+EKLL +++P R Q IRV+F EI R+LNHL+ + + ++D+
Sbjct: 64 YLDRLDYVAPMNQEHAFVLAVEKLLGVEVPKRGQLIRVLFSEIGRILNHLLNVTTQAMDV 123
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GA+ L+ F +RE L+ YE GAR+HA Y+RPGGV++DLPE
Sbjct: 124 GALTPPLWGFEQRERLMIFYERACGARLHANYFRPGGVHQDLPE---------------- 167
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
SL++ I +F + F + + + L+T NRI+KQR V IGVVS + A + GF+
Sbjct: 168 ---------SLIEDIGNFIDPFLIALGKLDALVTPNRIFKQRNVDIGVVSIDEAWARGFS 218
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
G M+RG+GV WDLRK QPYE Y+ + FDIP+GKN D YDRYL+R+EEMRQS KI++QC+
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYDEMEFDIPVGKNSDCYDRYLIRMEEMRQSAKIMRQCVD 278
Query: 578 WLRSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
L S + GPV S + KI P R MKS+ME LIHHFKL+TEGF+ P GE+Y VE PKG
Sbjct: 279 RLLSTEKNGPVSSLDRKIVPPKRSEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFG+YL+SDG NKPYR+K+R+PGFAHLQ++ + GHM++D I+G+ DIVFGE+DR
Sbjct: 339 EFGVYLISDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAILGSIDIVFGEVDR 396
>gi|85703209|ref|ZP_01034313.1| NADH dehydrogenase I, D subunit [Roseovarius sp. 217]
gi|85672137|gb|EAQ26994.1| NADH dehydrogenase I, D subunit [Roseovarius sp. 217]
Length = 406
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 233/416 (56%), Positives = 302/416 (72%), Gaps = 26/416 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 16 KIRNFNINFGPQHPAAHGVLRLVLELDGELVERCDPHIGLLHRGTEKLMESRTYLQNLPY 75
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +AIEKL +++P RA IRV++ EI R+LNHL+ + + ++D+G
Sbjct: 76 FDRLDYVAPMNQEHAWCLAIEKLTGVEVPRRASLIRVLYCEIGRILNHLLNVTTQAMDVG 135
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE GAR+HAAY+RPGGV++DLP
Sbjct: 136 ALTPPLWGFEEREKLMVFYERACGARLHAAYFRPGGVHQDLPT----------------- 178
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L+D IE + N FP+ +D+ + LLT+NRI+KQR IGV+S + AL GF+G
Sbjct: 179 --------ELIDDIETWANEFPRVLDDIDGLLTENRIFKQRNADIGVISQQEALDWGFSG 230
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG+ WDLR+ QPYE Y+ +F IP+GKNGD YDRYL R+EEMRQS +II Q I+
Sbjct: 231 VMVRGSGMAWDLRRAQPYECYDEFDFLIPVGKNGDCYDRYLCRMEEMRQSLRIIHQAIEK 290
Query: 579 LRSNKGP-VISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
LR+ +G I KIT P R MK +ME LIHHFKL+TEGF+VP GE+Y+ VE PKGEF
Sbjct: 291 LRAPEGQGEILARGKITPPKRAEMKRSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGEF 350
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLV+DG N+PYR KIR+PGF HLQ++ + GH ++DV IIGT D+VFGEIDR
Sbjct: 351 GVYLVADGTNRPYRAKIRAPGFLHLQAMDHVAKGHQLADVAAIIGTMDVVFGEIDR 406
>gi|332557946|ref|ZP_08412268.1| NADH dehydrogenase subunit D [Rhodobacter sphaeroides WS8N]
gi|332275658|gb|EGJ20973.1| NADH dehydrogenase subunit D [Rhodobacter sphaeroides WS8N]
Length = 394
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 230/415 (55%), Positives = 304/415 (73%), Gaps = 26/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 6 KLRNFNINFGPQHPAAHGVLRLVLELDGEVVERCDPHIGLLHRGTEKLMESRTYLQNLPY 65
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +AIE+L + +P RA IRV++ EI R+LNHL+ + + ++D+G
Sbjct: 66 FDRLDYVAPMNQEHAWCLAIERLTGVAVPRRASLIRVLYSEIGRVLNHLLNVTTQAMDVG 125
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE SGAR+HAAY+RPGGV++DL
Sbjct: 126 ALTPPLWGFEEREKLMVFYERASGARLHAAYFRPGGVHQDLTP----------------- 168
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L++ IE++ FPK +D+ + LLT+NRI+KQR V IG++S + L GF+G
Sbjct: 169 --------RLIEDIEEWAEHFPKVLDDLDELLTENRIFKQRNVDIGIISEKDILDWGFSG 220
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG WDLR+ QPYE Y+ +F IP+GKNGD YDRYL R+EEMRQS +II+QC+
Sbjct: 221 VMVRGSGFAWDLRRSQPYECYDEFDFQIPVGKNGDCYDRYLCRMEEMRQSTRIIQQCLAK 280
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR KG V++ K+T P R MK++ME LIHHFKL+TEGF+VP GE+Y+ VE PKGEFG
Sbjct: 281 LRVEKGDVLARG-KLTPPPRGEMKTSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGEFG 339
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLV+DG N+PYR KIR+PGF HLQ++ + GH+++DV IIGT D+VFGEIDR
Sbjct: 340 VYLVADGTNRPYRAKIRAPGFLHLQAIDYIAKGHLLADVSAIIGTLDVVFGEIDR 394
>gi|395786216|ref|ZP_10465943.1| NADH-quinone oxidoreductase subunit D [Bartonella tamiae Th239]
gi|423716891|ref|ZP_17691081.1| NADH-quinone oxidoreductase subunit D [Bartonella tamiae Th307]
gi|395422514|gb|EJF88710.1| NADH-quinone oxidoreductase subunit D [Bartonella tamiae Th239]
gi|395428965|gb|EJF95040.1| NADH-quinone oxidoreductase subunit D [Bartonella tamiae Th307]
Length = 396
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 227/418 (54%), Positives = 304/418 (72%), Gaps = 27/418 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
+ ++++ +NFGPQHPAAHGVLR+++EL+GEVV + DPHIGLLHR TEKL E +TYLQ+ P
Sbjct: 4 VNVRNFNINFGPQHPAAHGVLRMVIELDGEVVERVDPHIGLLHRGTEKLMETKTYLQATP 63
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y+DRLDYV+ M EHA+V+AIEKLL +++P R Q IRV+F EI R+LNHL+ + + ++D+
Sbjct: 64 YLDRLDYVAPMNQEHAFVLAIEKLLGVEVPKRGQLIRVLFSEIGRILNHLLNVTTQAMDV 123
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GA+ L+ F +RE L+ YE GAR+HA Y+RPGGV++DLPE
Sbjct: 124 GALTPPLWGFEQREKLMIFYERACGARLHANYFRPGGVHQDLPE---------------- 167
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
L+ I DF + F + + L+T NRI+KQR IGVV+ + A + GF+
Sbjct: 168 ---------KLVQDIGDFIDPFLVALSNLDALVTPNRIFKQRNADIGVVTAKEAWARGFS 218
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
G M+RG+GV WDLRK QPYE Y ++FDIP+GKN D YDRYL+R+EEMRQS KI++QC+
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYAEMDFDIPVGKNSDCYDRYLIRMEEMRQSAKIMRQCVD 278
Query: 578 WLRSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
L + GPV S ++KIT P R MK++ME LIHHFKL+TEGF+ P GE+Y+ VE PKG
Sbjct: 279 RLLGGEKTGPVSSLDHKITPPKRSEMKNSMESLIHHFKLYTEGFHTPEGEVYAAVEAPKG 338
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFG+YLVSDG NKPYR+K+R+PGFAHLQ++ + GHM++D I+G+ DIVFGE+DR
Sbjct: 339 EFGVYLVSDGTNKPYRVKLRAPGFAHLQAMDFLSRGHMLADATAILGSLDIVFGEVDR 396
>gi|365879274|ref|ZP_09418706.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
(NDH-1, chain D) [Bradyrhizobium sp. ORS 375]
gi|365292799|emb|CCD91237.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
(NDH-1, chain D) [Bradyrhizobium sp. ORS 375]
Length = 398
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 232/416 (55%), Positives = 306/416 (73%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 8 LRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIETKTYLQAMPYF 67
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +A E+LL I++P R Q IRV++ EI RLL+HL+ + + ++D+GA
Sbjct: 68 DRLDYVAPMNQEHAFCLAAERLLGIEVPRRGQLIRVLYSEIGRLLSHLLNVTTQAMDVGA 127
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHA Y+R GGV++DLP
Sbjct: 128 LTPPLWGFEEREKLMVFYERASGSRMHANYFRIGGVHQDLPT------------------ 169
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I+ F + F K +D+ + LLT NRI+KQR V IGVV+ ++A GF+G
Sbjct: 170 -------KLIDDIDAFCDPFLKVVDDLDQLLTGNRIFKQRNVDIGVVTLKQAWEWGFSGV 222
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLRK QPY++Y ++FDIPIGKNGD YDRYL+R+EEMRQS +I+KQCI L
Sbjct: 223 MVRGSGAAWDLRKSQPYDVYAEMDFDIPIGKNGDCYDRYLIRMEEMRQSVRIMKQCIAKL 282
Query: 580 RS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
R+ +GPV+ +NKI P R MK +ME LIHHFKL+TEG +VP GEIY+ VE PKGEF
Sbjct: 283 RAPDGQGPVLITDNKIAPPRRGEMKRSMEALIHHFKLYTEGVHVPAGEIYAAVEAPKGEF 342
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLV+DG NKPY+ KIR+PGFAHLQ++ + GH+++DV I+G+ DIVFGE+DR
Sbjct: 343 GVYLVADGTNKPYKCKIRAPGFAHLQAMDFLCRGHLLADVSAILGSLDIVFGEVDR 398
>gi|296283833|ref|ZP_06861831.1| NADH dehydrogenase subunit D [Citromicrobium bathyomarinum JL354]
Length = 405
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 224/415 (53%), Positives = 303/415 (73%), Gaps = 26/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I +Y +NFGPQHPAAHGVLR+++EL+GE+V + DPH+GLLHR TEKL E +TYLQ+LPY
Sbjct: 17 QITNYTINFGPQHPAAHGVLRMVMELDGEIVERVDPHVGLLHRGTEKLIEHKTYLQALPY 76
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDY S +C EH+YV+AIEKLLN+++PIRAQY+RV+F E+TR+ NH + IG+H +D+G
Sbjct: 77 FDRLDYCSPLCMEHSYVLAIEKLLNLEVPIRAQYLRVLFAELTRMSNHFLNIGAHVMDVG 136
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM L+ F RED ++ +E SGARMH+A++RPGGV++D+PE +
Sbjct: 137 AMTPNLWIFELREDCMNFFERASGARMHSAWFRPGGVHQDVPEKL--------------- 181
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L+D E NR P+ + +L+ DNRI+KQR V I VVS E A+ GF+G
Sbjct: 182 ---------LVDIGEWLDNRVPELFGDAMSLVMDNRIFKQRNVDIAVVSREDAIKWGFSG 232
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLR +GV WDLRK QPY++Y+ ++F++P+G N D YDR++VR++E+ QS KIIKQC+
Sbjct: 233 PMLRAAGVPWDLRKSQPYDVYDRMDFEVPVGTNSDCYDRFMVRVQEVYQSMKIIKQCLAE 292
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GP+ S++ K++ P R MK +ME LIHHFKL+TEGF+VP GE+Y E PKGEFG
Sbjct: 293 MPT--GPIASDDRKVSPPKRGEMKQSMEALIHHFKLYTEGFHVPAGEVYVATESPKGEFG 350
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG+NKPYR KIR F+HLQ++ M GHM+ D I+G D+VFGE DR
Sbjct: 351 VYLVSDGSNKPYRCKIRPTAFSHLQAMDMMTKGHMLPDATAILGAIDVVFGECDR 405
>gi|221043702|dbj|BAH13528.1| unnamed protein product [Homo sapiens]
Length = 406
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 236/408 (57%), Positives = 300/408 (73%), Gaps = 27/408 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+K+ LNFGPQHPAAHGVLRL++EL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 26 VKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 85
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITRLLNH+M + +H+LD+GA
Sbjct: 86 DRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGA 145
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 146 MTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPL------------------ 187
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I F+ F +DE E LLT+NRIW+ R + IGVV+ E AL+ GF+G
Sbjct: 188 -------GLMDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGV 240
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ + FD+P+G GD YDRYL R+EEMRQS +II QC+
Sbjct: 241 MLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLN-- 298
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 299 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 358
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIV 687
YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV IIGT+ IV
Sbjct: 359 YLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTRPIV 406
>gi|261324917|ref|ZP_05964114.1| NADH-quinone oxidoreductase subunit D [Brucella neotomae 5K33]
gi|261300897|gb|EEY04394.1| NADH-quinone oxidoreductase subunit D [Brucella neotomae 5K33]
Length = 396
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/417 (54%), Positives = 306/417 (73%), Gaps = 27/417 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 5 QVRNFNINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLMEAKTYLQAVPY 64
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
+DRLDYV+ M EHAY +A+E+LL+I++P R Q IRV++ EI R+LNHL+ + + ++D+G
Sbjct: 65 LDRLDYVAPMNQEHAYALAVERLLDIEVPKRGQLIRVLYSEIGRILNHLLNVTTQAMDVG 124
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE GARMHAAY+RPGGV++DLP+
Sbjct: 125 ALTPPLWGFEEREKLMVFYERACGARMHAAYFRPGGVHQDLPD----------------- 167
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L++ I + + F + + L+T NRI+KQR V IGVV E A + GF+G
Sbjct: 168 --------QLIEDIGKWIDSFFTTLKNLDDLITPNRIFKQRNVDIGVVKLEDAWAWGFSG 219
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG WDLRK QPYE Y+ + FDIP+GKNGD YDRYL+R+EEMRQS +I++QC+
Sbjct: 220 VMVRGSGAAWDLRKSQPYECYSEMEFDIPVGKNGDCYDRYLIRMEEMRQSARIMRQCVDL 279
Query: 579 L--RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
L + GPV + ++KI P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGE
Sbjct: 280 LLGKERVGPVSNTDHKIVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGE 339
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YLVSDG+NKPYR K+R+PGFAHLQ++ + GHM++DV I+G+ DIVFGE+DR
Sbjct: 340 FGVYLVSDGSNKPYRCKLRAPGFAHLQAMDFLCRGHMLADVSAILGSLDIVFGEVDR 396
>gi|190891288|ref|YP_001977830.1| NADH dehydrogenase subunit D [Rhizobium etli CIAT 652]
gi|218534357|sp|B3PW00.1|NUOD1_RHIE6 RecName: Full=NADH-quinone oxidoreductase subunit D 1; AltName:
Full=NADH dehydrogenase I subunit D 1; AltName:
Full=NDH-1 subunit D 1
gi|190696567|gb|ACE90652.1| NADH-ubiquinone oxidoreductase protein, chain D [Rhizobium etli
CIAT 652]
Length = 396
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 233/416 (56%), Positives = 305/416 (73%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 6 VRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHAY +A+E+LL I+IPIR Q IRV++ EI R+L+HL+ + + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAYALAVERLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHAAY RPGGV++DLPE
Sbjct: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYIRPGGVHQDLPE------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+ I D+ + F K +D+ + LLT NRI+KQR V IGVVS E + GF+G
Sbjct: 168 -------KLVQDIGDWCDPFLKALDDIDNLLTGNRIFKQRNVDIGVVSLEDCWAWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLR+ QPYE Y+ L FDIPIGKNGD+YDRYL+R+ EMRQS +I+KQC+ L
Sbjct: 221 MVRGSGAAWDLRRAQPYECYSDLEFDIPIGKNGDNYDRYLIRMIEMRQSVRIMKQCVNRL 280
Query: 580 RSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
S+ GP S + K+ P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGEF
Sbjct: 281 LSDAKTGPFSSIDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG+NKPYR KIR+PG+AHLQ++ M GH ++DV ++G+ DIVFGE+DR
Sbjct: 341 GVYLVSDGSNKPYRCKIRAPGYAHLQAMDFMCRGHQLADVAAVLGSLDIVFGEVDR 396
>gi|417110603|ref|ZP_11963773.1| NADH-ubiquinone oxidoreductase protein, chain D [Rhizobium etli
CNPAF512]
gi|327188490|gb|EGE55704.1| NADH-ubiquinone oxidoreductase protein, chain D [Rhizobium etli
CNPAF512]
Length = 396
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 233/416 (56%), Positives = 305/416 (73%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 6 VRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHAY +A+E+LL I+IPIR Q IRV++ EI R+L+HL+ + + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAYALAVERLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHAAY RPGGV++DLPE
Sbjct: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYVRPGGVHQDLPE------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+ I D+ + F K +D+ + LLT NRI+KQR V IGVVS E + GF+G
Sbjct: 168 -------KLVQDIGDWCDPFLKALDDIDNLLTGNRIFKQRNVDIGVVSLEDCWAWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLR+ QPYE Y+ L FDIPIGKNGD+YDRYL+R+ EMRQS +I+KQC+ L
Sbjct: 221 MVRGSGAAWDLRRAQPYECYSDLEFDIPIGKNGDNYDRYLIRMIEMRQSVRIMKQCVNRL 280
Query: 580 RSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
S+ GP S + K+ P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGEF
Sbjct: 281 LSDAKTGPFSSIDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG+NKPYR KIR+PG+AHLQ++ M GH ++DV ++G+ DIVFGE+DR
Sbjct: 341 GVYLVSDGSNKPYRCKIRAPGYAHLQAMDFMCRGHQLADVAAVLGSLDIVFGEVDR 396
>gi|440226237|ref|YP_007333328.1| NADH-quinone oxidoreductase subunit d [Rhizobium tropici CIAT 899]
gi|440037748|gb|AGB70782.1| NADH-quinone oxidoreductase subunit d [Rhizobium tropici CIAT 899]
Length = 396
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 234/416 (56%), Positives = 303/416 (72%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 6 VRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHAY +A+EKLL I IPIR Q IRV++ EI R+L+HL+ + + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAYALAVEKLLGIDIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHAAY RPGGV++DLPE
Sbjct: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYVRPGGVHQDLPE------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+ I D+ + F K +D+ + LLT NRI+KQR V IGVVS E + GF+G
Sbjct: 168 -------KLVQDIGDWCDPFLKALDDIDDLLTGNRIFKQRNVDIGVVSLEDCWAWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLRK QPYE Y+ L FDIPIGKNGD YDRYL+R+ EMR+S +I+KQC+ L
Sbjct: 221 MVRGSGAAWDLRKAQPYECYSDLEFDIPIGKNGDCYDRYLIRMIEMRESVRIMKQCVNRL 280
Query: 580 RSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+ GPV S + K+ P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGEF
Sbjct: 281 LGDARTGPVSSLDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG+NKPYR KIR+PG+AHLQ++ M GH ++DV ++G+ DIVFGE+DR
Sbjct: 341 GVYLVSDGSNKPYRCKIRAPGYAHLQAMDFMCRGHQLADVAAVLGSLDIVFGEVDR 396
>gi|395792418|ref|ZP_10471852.1| NADH-quinone oxidoreductase subunit D [Bartonella vinsonii subsp.
arupensis Pm136co]
gi|395432596|gb|EJF98575.1| NADH-quinone oxidoreductase subunit D [Bartonella vinsonii subsp.
arupensis Pm136co]
Length = 396
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 229/418 (54%), Positives = 306/418 (73%), Gaps = 27/418 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
+ ++++ +NFGPQHPAAHGVLR++LEL+GEVV + DPHIGLLHR TEKL E +TYLQ+ P
Sbjct: 4 VNVRNFNINFGPQHPAAHGVLRMVLELDGEVVERVDPHIGLLHRGTEKLMETKTYLQAGP 63
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y+DRLDYV+ M EHA+V+A+EKLL +++P R Q IRV+F EI R+LNHL+ + + ++D+
Sbjct: 64 YLDRLDYVAPMNQEHAFVLAVEKLLGVEVPKRGQLIRVLFSEIGRILNHLLNVTTQAMDV 123
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GA+ L+ F +RE L+ YE GAR+HA Y+RPGGV++DLPE
Sbjct: 124 GALTPPLWGFEQRERLMIFYERACGARLHANYFRPGGVHQDLPE---------------- 167
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
SL++ I +F + F + + + L+T NRI+KQR V IGVVS + A + GF+
Sbjct: 168 ---------SLIEDIGNFIDPFLIALGKLDALVTPNRIFKQRNVDIGVVSIDEAWARGFS 218
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
G M+RG+GV WDLRK QPYE Y+ + FDIP+GKN D YDRYL+R+EEMRQS KI++QC+
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYDEIEFDIPVGKNSDCYDRYLIRMEEMRQSAKIMRQCVD 278
Query: 578 WLRSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
L S + GPV S + KI P R MKS+ME LIHHFKL+TEGF+ P GE+Y VE PKG
Sbjct: 279 RLLSTEKNGPVSSLDRKIVPPKRSEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFG+YL+SDG NKPYR+K+R+PGFAHLQ++ + GHM++D I+G+ DIVFGE+DR
Sbjct: 339 EFGVYLISDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAILGSIDIVFGEVDR 396
>gi|121601914|ref|YP_989073.1| NADH dehydrogenase subunit D [Bartonella bacilliformis KC583]
gi|421760879|ref|ZP_16197690.1| NADH dehydrogenase subunit D [Bartonella bacilliformis INS]
gi|218534390|sp|A1USX0.1|NUOD_BARBK RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|120614091|gb|ABM44692.1| NADH dehydrogenase (quinone), D subunit [Bartonella bacilliformis
KC583]
gi|411174110|gb|EKS44146.1| NADH dehydrogenase subunit D [Bartonella bacilliformis INS]
Length = 396
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 229/418 (54%), Positives = 305/418 (72%), Gaps = 27/418 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
+ ++++ +NFGPQHPAAHGVLR++LEL+GEVV + DPHIGLLHR TEKL E +TYLQ+ P
Sbjct: 4 VNVRNFNINFGPQHPAAHGVLRMVLELDGEVVERVDPHIGLLHRGTEKLMETKTYLQAGP 63
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y+DRLDYV+ M EHA+V+A+EKLL +++P R Q IRV+F EI RLLNHL+ + + ++D+
Sbjct: 64 YLDRLDYVAPMNQEHAFVLAVEKLLGVEVPKRGQLIRVLFSEIGRLLNHLLNVTTQAMDV 123
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GA+ L+ F +RE L+ YE GAR+HA Y+RPGGV++DLPE+
Sbjct: 124 GALTPPLWGFEQREKLMIFYERACGARLHANYFRPGGVHQDLPEV--------------- 168
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
L++ I +F + F + + L+T NRI+KQR V IGVVS + A + GF+
Sbjct: 169 ----------LIEDIGNFIDPFLVALGNLDALITPNRIFKQRNVDIGVVSIDEAWARGFS 218
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
G M+RG+GV WDLRK QPYE Y+ + FDIP+GKN D YDRYL+R+EEMRQS KI++QC+
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYDEMEFDIPVGKNSDCYDRYLIRMEEMRQSAKIMRQCVD 278
Query: 578 WLRSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
L S + GPV S + KI P R MK++ME LIHHFKL+TEGF+ P GE+Y VE PKG
Sbjct: 279 RLLSTEKDGPVSSLDRKIVPPKRSEMKNSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFG+YLVSDG NKPYR+K+R+PGFAHLQ++ + GHM++D I+G+ DIVFGE+DR
Sbjct: 339 EFGVYLVSDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAILGSIDIVFGEVDR 396
>gi|398829512|ref|ZP_10587710.1| NADH dehydrogenase I, D subunit [Phyllobacterium sp. YR531]
gi|398216997|gb|EJN03537.1| NADH dehydrogenase I, D subunit [Phyllobacterium sp. YR531]
Length = 396
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 227/417 (54%), Positives = 307/417 (73%), Gaps = 27/417 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 5 QVRNFNINFGPQHPAAHGVLRLVLELDGEVVARVDPHIGLLHRGTEKLMEAKTYLQAVPY 64
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
+DRLDYV+ M EHAY +A+E+LL I++P R Q IRV+F EI R+L+HL+ + + ++D+G
Sbjct: 65 LDRLDYVAPMNQEHAYALAVERLLKIEVPKRGQLIRVLFSEIGRILSHLLNVTTQAMDVG 124
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE GARMHAAY+RPGGV++DLP+
Sbjct: 125 ALTPPLWGFEEREKLMVFYERACGARMHAAYFRPGGVHQDLPD----------------- 167
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L++ I + + F + + L+T NRI+KQR V IGVV+ E A + GF+G
Sbjct: 168 --------QLIEDIGKWCDPFLTTVKNLDDLITPNRIFKQRNVDIGVVTLEDAWAWGFSG 219
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG WDLRK QPYE Y+ + FD+PIGKNGD YDRYL+R+EEMRQS +I++QC++
Sbjct: 220 VMVRGSGAAWDLRKSQPYECYSEMEFDVPIGKNGDCYDRYLIRMEEMRQSVRIMRQCVEL 279
Query: 579 L--RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
L + GPV + + KI P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGE
Sbjct: 280 LLGKERVGPVSNTSAKIVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGE 339
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG++LVSDG+NKPYR+K+R+PGFAHLQ++ + GHM++DV I+G+ DIVFGE+DR
Sbjct: 340 FGVFLVSDGSNKPYRVKLRAPGFAHLQAMDFLCRGHMLADVSAILGSLDIVFGEVDR 396
>gi|406866168|gb|EKD19208.1| NADH dehydrogenase I, D subunit [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 476
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 234/415 (56%), Positives = 296/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILEL GE + ++DPH+GLLHR TEKL E +TY+Q+LPY
Sbjct: 89 KIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRSDPHVGLLHRGTEKLIEYKTYIQALPY 148
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLNI+IP RA++IR +F EITR+LNHLM + SHS+D+G
Sbjct: 149 FDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKWIRTLFAEITRILNHLMSVLSHSMDVG 208
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV++D+P
Sbjct: 209 ALTPFLWGFEEREKLMEFYERVSGARLHAAYIRPGGVHQDIPV----------------- 251
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E LLTDNRIW R GIGVVS AL+ F+G
Sbjct: 252 --------GLLDDIYQWATQFSDRIDETEELLTDNRIWIGRTRGIGVVSAADALNYSFSG 303
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 304 VMLRGSGVPWDVRKSQPYDAYGQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNK 363
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + K++ P R MK NME LIHHF LFT+G+ VP GE YS +E PKGE G
Sbjct: 364 MPA--GPVRVEDYKVSPPPRAAMKENMEALIHHFLLFTKGYSVPPGETYSAIEAPKGEMG 421
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+++VSDG+ +PYR KIR+PGFAHL ++ GH+++D V IIGT D+VFGE+DR
Sbjct: 422 VFVVSDGSERPYRCKIRAPGFAHLGGFDQISRGHLLADAVAIIGTMDLVFGEVDR 476
>gi|62289754|ref|YP_221547.1| NADH dehydrogenase subunit D [Brucella abortus bv. 1 str. 9-941]
gi|82699682|ref|YP_414256.1| NADH dehydrogenase subunit D [Brucella melitensis biovar Abortus
2308]
gi|189023999|ref|YP_001934767.1| NADH dehydrogenase subunit D [Brucella abortus S19]
gi|237815241|ref|ZP_04594239.1| NADH dehydrogenase I, D subunit [Brucella abortus str. 2308 A]
gi|260545496|ref|ZP_05821237.1| pectinesterase [Brucella abortus NCTC 8038]
gi|260757780|ref|ZP_05870128.1| NADH dehydrogenase subunit D [Brucella abortus bv. 4 str. 292]
gi|260761605|ref|ZP_05873948.1| NADH dehydrogenase subunit D [Brucella abortus bv. 2 str. 86/8/59]
gi|376273467|ref|YP_005152045.1| NADH dehydrogenase subunit D [Brucella abortus A13334]
gi|423167070|ref|ZP_17153773.1| NADH-quinone oxidoreductase subunit D [Brucella abortus bv. 1 str.
NI435a]
gi|423170554|ref|ZP_17157229.1| NADH-quinone oxidoreductase subunit D [Brucella abortus bv. 1 str.
NI474]
gi|423173365|ref|ZP_17160036.1| NADH-quinone oxidoreductase subunit D [Brucella abortus bv. 1 str.
NI486]
gi|423177349|ref|ZP_17163995.1| NADH-quinone oxidoreductase subunit D [Brucella abortus bv. 1 str.
NI488]
gi|423179985|ref|ZP_17166626.1| NADH-quinone oxidoreductase subunit D [Brucella abortus bv. 1 str.
NI010]
gi|423183117|ref|ZP_17169754.1| NADH-quinone oxidoreductase subunit D [Brucella abortus bv. 1 str.
NI016]
gi|423185941|ref|ZP_17172555.1| NADH-quinone oxidoreductase subunit D [Brucella abortus bv. 1 str.
NI021]
gi|423189081|ref|ZP_17175691.1| NADH-quinone oxidoreductase subunit D [Brucella abortus bv. 1 str.
NI259]
gi|75505303|sp|Q57DU8.1|NUOD_BRUAB RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|123546639|sp|Q2YNG0.1|NUOD_BRUA2 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|218534392|sp|B2S546.1|NUOD_BRUA1 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|62195886|gb|AAX74186.1| NuoD, NADH dehydrogenase I, D subunit [Brucella abortus bv. 1 str.
9-941]
gi|82615783|emb|CAJ10781.1| Pectinesterase:NADH-ubiquinone oxidoreductase, chain 49kDa
[Brucella melitensis biovar Abortus 2308]
gi|189019571|gb|ACD72293.1| Pectinesterase [Brucella abortus S19]
gi|237790078|gb|EEP64288.1| NADH dehydrogenase I, D subunit [Brucella abortus str. 2308 A]
gi|260096903|gb|EEW80778.1| pectinesterase [Brucella abortus NCTC 8038]
gi|260668098|gb|EEX55038.1| NADH dehydrogenase subunit D [Brucella abortus bv. 4 str. 292]
gi|260672037|gb|EEX58858.1| NADH dehydrogenase subunit D [Brucella abortus bv. 2 str. 86/8/59]
gi|363401073|gb|AEW18043.1| NADH dehydrogenase subunit D [Brucella abortus A13334]
gi|374540602|gb|EHR12102.1| NADH-quinone oxidoreductase subunit D [Brucella abortus bv. 1 str.
NI474]
gi|374541958|gb|EHR13448.1| NADH-quinone oxidoreductase subunit D [Brucella abortus bv. 1 str.
NI435a]
gi|374542694|gb|EHR14181.1| NADH-quinone oxidoreductase subunit D [Brucella abortus bv. 1 str.
NI486]
gi|374549830|gb|EHR21272.1| NADH-quinone oxidoreductase subunit D [Brucella abortus bv. 1 str.
NI010]
gi|374550349|gb|EHR21788.1| NADH-quinone oxidoreductase subunit D [Brucella abortus bv. 1 str.
NI016]
gi|374550633|gb|EHR22069.1| NADH-quinone oxidoreductase subunit D [Brucella abortus bv. 1 str.
NI488]
gi|374558739|gb|EHR30132.1| NADH-quinone oxidoreductase subunit D [Brucella abortus bv. 1 str.
NI259]
gi|374559329|gb|EHR30717.1| NADH-quinone oxidoreductase subunit D [Brucella abortus bv. 1 str.
NI021]
Length = 396
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/417 (54%), Positives = 306/417 (73%), Gaps = 27/417 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 5 QVRNFNINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLMEAKTYLQAVPY 64
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
+DRLDYV+ M EHAY +A+E+LL+I++P R Q IRV++ EI R+LNHL+ + + ++D+G
Sbjct: 65 LDRLDYVAPMNQEHAYALAVERLLDIEVPKRGQLIRVLYSEIGRILNHLLNVTTQAMDVG 124
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE GARMHAAY+RPGGV++DLP+
Sbjct: 125 ALTPPLWGFEEREKLMVFYERACGARMHAAYFRPGGVHQDLPD----------------- 167
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L++ I + + F + + L+T NRI+KQR V IGVV E A + GF+G
Sbjct: 168 --------QLIEDIGKWIDPFFTTLKNLDDLITPNRIFKQRNVDIGVVKLEDAWAWGFSG 219
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG WDLRK QPYE Y+ + FDIP+GKNGD YDRYL+R+EEMRQS +I++QC+
Sbjct: 220 VMVRGSGAAWDLRKSQPYECYSEMEFDIPVGKNGDCYDRYLIRMEEMRQSARIMRQCVDL 279
Query: 579 L--RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
L + GPV + ++KI P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGE
Sbjct: 280 LLGKERVGPVSNTDHKIVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGE 339
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YLVSDG+NKPYR K+R+PGFAHLQ++ + GHM++DV I+G+ DIVFGE+DR
Sbjct: 340 FGVYLVSDGSNKPYRFKLRAPGFAHLQAMDFLCRGHMLADVSAILGSLDIVFGEVDR 396
>gi|198423297|ref|XP_002122965.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein
2 [Ciona intestinalis]
Length = 471
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 234/428 (54%), Positives = 301/428 (70%), Gaps = 27/428 (6%)
Query: 266 FVGHPFRKDFPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEK 325
+V P + ++ + LNFGPQHPAAHGVLRLILEL GEVV +ADPHIGLLHRATEK
Sbjct: 71 YVKDPIIHRDKINKLDTLTLNFGPQHPAAHGVLRLILELAGEVVIRADPHIGLLHRATEK 130
Query: 326 LAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLN 385
L E +TY+Q LPY DRLDYVSMM NE Y +AIE+L+ I P RAQ+IRV F E TR+LN
Sbjct: 131 LMEYKTYIQGLPYFDRLDYVSMMVNEQCYSLAIERLMGITAPPRAQWIRVFFAEQTRILN 190
Query: 386 HLMWIGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQ 445
H+M I +H+LD+GAM + ERE +++ YE VSGARMHAAY RPGGV +DLP
Sbjct: 191 HIMGITTHALDVGAMTPFFWLMEEREKMMEFYERVSGARMHAAYVRPGGVSQDLPL---- 246
Query: 446 YKSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGV 505
L+D + D+ RF +DE E +L++NRIW+ R V +G+
Sbjct: 247 ---------------------GLMDDVYDWAIRFSARVDELEEMLSENRIWRTRTVDVGL 285
Query: 506 VSPERALSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEM 565
++ E+AL+ G +G +LRGSG+KWDLRK QPY+ Y+ + FD+PIG GD+YDRYL R+EEM
Sbjct: 286 ITAEQALNWGCSGVVLRGSGIKWDLRKTQPYDAYDQVEFDVPIGTRGDTYDRYLCRVEEM 345
Query: 566 RQSNKIIKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGE 625
RQS +II+QC+ + +G + ++NK+ P R MK +ME +IHHFKLFTEGF VP G
Sbjct: 346 RQSLRIIQQCLN--KMPEGEIKVDDNKLNPPTRSQMKDSMEAVIHHFKLFTEGFQVPAGS 403
Query: 626 IYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQD 685
Y+ VE PKGEFG+YLVSDG +KPYR KI++PGFAHL ++ + G + DVV +IGT D
Sbjct: 404 TYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLATIEHVAPGLQLPDVVALIGTLD 463
Query: 686 IVFGEIDR 693
IVFGE+DR
Sbjct: 464 IVFGEVDR 471
>gi|94496479|ref|ZP_01303056.1| NADH dehydrogenase I, D subunit [Sphingomonas sp. SKA58]
gi|94424225|gb|EAT09249.1| NADH dehydrogenase I, D subunit [Sphingomonas sp. SKA58]
Length = 411
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 223/415 (53%), Positives = 303/415 (73%), Gaps = 26/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRL++ELEGE+V + DPH+GLLHR TEKL E +TYLQ+LPY
Sbjct: 23 EIQNYTINFGPQHPAAHGVLRLVMELEGEIVERCDPHVGLLHRGTEKLIEYKTYLQALPY 82
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDY S + EH+YV+A+EKLLN+++P+RAQY+RV F E+TR+ NH++ +GSH +D+G
Sbjct: 83 FDRLDYCSPLGMEHSYVLAVEKLLNLEVPLRAQYLRVFFAELTRICNHMLNLGSHVMDVG 142
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM L+ F RED L+ +E SGARMH+AY+RPGGV++D+P +
Sbjct: 143 AMTPNLWLFEIREDCLNFFERASGARMHSAYFRPGGVHQDVPLKL--------------- 187
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L D + R P+ ++ +L+ DNRI+KQR V I VVS E AL GF+G
Sbjct: 188 ---------LTDIADWLDTRLPRLFEDAMSLVVDNRIFKQRNVDIAVVSKEDALKWGFSG 238
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PM+RGSG+ WD+RK QPY++Y+ ++FD+P+G N D YDR++VR+EE+RQS +I+KQC+
Sbjct: 239 PMIRGSGIPWDIRKAQPYDVYDRMDFDVPVGTNFDCYDRFMVRVEEVRQSARIMKQCLNE 298
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ +GP+ S + K+ P R MK +ME LIHHFKL+TEGF+VP GE+Y E PKGEFG
Sbjct: 299 M--PEGPIASFDRKVVPPKRGEMKRSMEALIHHFKLYTEGFHVPAGEVYVATESPKGEFG 356
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLV+DG+NKPYR KIR F+HLQ++ M+ GHM++D ++G DIVFGE DR
Sbjct: 357 VYLVADGSNKPYRCKIRPTAFSHLQAMDFMMKGHMLADTTAVLGAMDIVFGECDR 411
>gi|254796919|ref|YP_003081756.1| NADH dehydrogenase subunit D [Neorickettsia risticii str. Illinois]
gi|254590155|gb|ACT69517.1| NADH dehydrogenase (quinone), d subunit [Neorickettsia risticii
str. Illinois]
Length = 388
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 231/410 (56%), Positives = 295/410 (71%), Gaps = 27/410 (6%)
Query: 284 KLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLD 343
+LNFGPQHPAAHGVLRLI++L+GE V + DPHIG LHR TEKL E +TYLQ+LPY DRLD
Sbjct: 6 ELNFGPQHPAAHGVLRLIMQLDGETVERLDPHIGFLHRGTEKLIEHKTYLQALPYFDRLD 65
Query: 344 YVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVL 403
YVS M EHAY + +EKLL I +P RAQY+RV+F EITR+LNHL+ I +H+LD+GAM L
Sbjct: 66 YVSPMAQEHAYSLCVEKLLGITVPPRAQYLRVIFVEITRILNHLLNITTHALDVGAMNPL 125
Query: 404 LYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNEN 463
+ F ERE +L YE SGAR HAAY RPGG+ D+P+
Sbjct: 126 FWMFEEREKMLSFYEKASGARFHAAYIRPGGLAADIPD---------------------- 163
Query: 464 RQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRG 523
L + I F FP +D+ +LTDN I+KQRLV IG VS + A+++GF+GP+LR
Sbjct: 164 ---GLDEEIMSFLESFPHKLDDVADVLTDNPIFKQRLVDIGKVSKKEAVALGFSGPVLRA 220
Query: 524 SGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNK 583
SG+ WDLR+ QPYE+Y L+F IP+G GDSYDRYLVR+ EM +S KIIKQCI R +
Sbjct: 221 SGIPWDLRRSQPYEVYESLDFAIPVGNCGDSYDRYLVRMAEMYESVKIIKQCID--RLPE 278
Query: 584 GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVS 643
GPV+ ++ K+ P+R MK++ME LIHHFKL++EG++VP GE Y VE PKGEFG+Y+VS
Sbjct: 279 GPVVVDDRKVAPPSRAEMKTSMEALIHHFKLYSEGYHVPEGETYFAVESPKGEFGVYIVS 338
Query: 644 DGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
DG NKPYR +IR+PGF HLQ+L + H+++DV I+G+ DIVFGE+DR
Sbjct: 339 DGTNKPYRCRIRAPGFVHLQALDALSRKHLLADVPAILGSLDIVFGEVDR 388
>gi|75676076|ref|YP_318497.1| NADH dehydrogenase subunit D [Nitrobacter winogradskyi Nb-255]
gi|123613266|sp|Q3SRE6.1|NUOD_NITWN RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|74420946|gb|ABA05145.1| NADH dehydrogenase subunit D [Nitrobacter winogradskyi Nb-255]
Length = 402
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 235/416 (56%), Positives = 306/416 (73%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL EQ+TYLQ++PY
Sbjct: 12 MRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEQKTYLQAIPYF 71
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +A E+LL I +P R Q IRV++ EI R+L+HL+ + + ++D+GA
Sbjct: 72 DRLDYVAPMNQEHAFCLAAERLLGIAVPRRGQLIRVLYCEIGRILSHLLNVTTQAMDVGA 131
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHAAY+R GGV++DLP
Sbjct: 132 LTPPLWGFEEREKLMMFYERASGSRMHAAYFRIGGVHQDLPP------------------ 173
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D IE + + F + + + + LLT NRI+KQR V IGVV+ E+A GF+G
Sbjct: 174 -------RLIDDIEAWCDPFLQVVADLDRLLTANRIFKQRNVDIGVVTLEQAWEWGFSGV 226
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLRK QPYE Y ++FDIPIGKNGD YDRYL+R+EEMRQS +I+KQCI L
Sbjct: 227 MVRGSGAAWDLRKAQPYECYAEMDFDIPIGKNGDCYDRYLIRMEEMRQSVRIMKQCIAKL 286
Query: 580 RS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
R+ +GPV +NKI P R MK +ME LIHHFKL+TEGF+VP GEIY+ VE PKGEF
Sbjct: 287 RAPDGQGPVAVEDNKIFPPRRGEMKRSMEALIHHFKLYTEGFHVPAGEIYAAVEAPKGEF 346
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG+NKPY+ KIR+PGFAHLQ++ + GH+++DV I+G+ DIVFGE+DR
Sbjct: 347 GVYLVSDGSNKPYKCKIRAPGFAHLQAMDFICRGHLLADVSAILGSLDIVFGEVDR 402
>gi|302383048|ref|YP_003818871.1| NADH dehydrogenase I subunit D [Brevundimonas subvibrioides ATCC
15264]
gi|302193676|gb|ADL01248.1| NADH dehydrogenase I, D subunit [Brevundimonas subvibrioides ATCC
15264]
Length = 431
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 232/414 (56%), Positives = 303/414 (73%), Gaps = 26/414 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
+ + +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E RTYLQ++PY+D
Sbjct: 43 RKFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLMEARTYLQNVPYLD 102
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYV+ M EHA+ +AIE+L+ I++P RAQ IRV++ EI R+L+H++ + + +LD+GA+
Sbjct: 103 RLDYVAPMNQEHAFCLAIERLMGIEVPYRAQLIRVLYSEIGRILSHMLNVTTQALDVGAL 162
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
L+ F +RE L+ YE GAR+HA Y+RPGGV++DLP
Sbjct: 163 TPPLWGFEQREKLMVFYERACGARLHANYFRPGGVHQDLPM------------------- 203
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
+L+D I + FP + + E+L+T+NRI+KQR V IG+VS E+AL GF+G M
Sbjct: 204 ------ALIDDIGRWCAEFPTALADIESLVTENRIFKQRNVDIGIVSKEQALEWGFSGVM 257
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
LRGS + WDLRK QPYE Y L+FD+ +GKNGD +DRYLVR+EEM+QS I++QCI LR
Sbjct: 258 LRGSDIAWDLRKSQPYECYAELDFDVVVGKNGDCWDRYLVRVEEMKQSVHIMEQCIHKLR 317
Query: 581 SNKG-PVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G PV+ NNKI P R MK +ME LIHHFKL+TEGF+ P GE+Y+ VE PKGEFGI
Sbjct: 318 NCPGEPVMVENNKIVPPTRGEMKRSMEALIHHFKLYTEGFHTPAGEVYAAVEAPKGEFGI 377
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG NKPYR+KI +PGF HLQ++ M GHM++DV I+G+ DIVFGE+DR
Sbjct: 378 YLVSDGTNKPYRVKISAPGFRHLQAMDWMNRGHMLADVSAILGSLDIVFGEVDR 431
>gi|399090338|ref|ZP_10754039.1| NADH dehydrogenase I, D subunit [Caulobacter sp. AP07]
gi|398027967|gb|EJL21493.1| NADH dehydrogenase I, D subunit [Caulobacter sp. AP07]
Length = 416
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 234/432 (54%), Positives = 304/432 (70%), Gaps = 26/432 (6%)
Query: 262 TDYGFVGHPFRKDFPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHR 321
TD+ F P P ++ + +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR
Sbjct: 11 TDF-FHDAPSLPIVPETPVRKFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHR 69
Query: 322 ATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEIT 381
TEKL E RTYLQ++PY DRLDYV+ M EHA+ +AIEKLL + +P R IRV+F EI
Sbjct: 70 GTEKLMEARTYLQNIPYFDRLDYVAPMNQEHAFCLAIEKLLGVDVPKRGSLIRVLFCEIG 129
Query: 382 RLLNHLMWIGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPE 441
R+LNHL+ + + ++D+GA+ L+ F ERE L+ YE GAR+HA Y+RPGGV++DL
Sbjct: 130 RVLNHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERACGARLHANYFRPGGVHQDL-- 187
Query: 442 IMPQYKSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLV 501
SL+D IE + FPK D+ E L+TDNRI+KQR V
Sbjct: 188 -----------------------TPSLIDDIETWAKAFPKICDDIEGLITDNRIFKQRNV 224
Query: 502 GIGVVSPERALSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVR 561
IGVVS E AL+ GF+G M+RGSG+ WDLR+ QPYE YN FDIP+GKNGD YDRYL R
Sbjct: 225 DIGVVSKEDALAWGFSGVMVRGSGIAWDLRRNQPYECYNEFEFDIPLGKNGDCYDRYLCR 284
Query: 562 IEEMRQSNKIIKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYV 621
++EMR+S +II Q I+ LR G V++ +NK++ P R MK +ME LIHHFKL+TEGF
Sbjct: 285 MQEMRESTRIILQAIEKLRVTPGSVMTQDNKVSPPRRAEMKRSMEALIHHFKLYTEGFRT 344
Query: 622 PLGEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTII 681
P GE+Y+ VE PKGEFG+++VS+G NKPYR KI++PGF+HL ++ M GH ++DV I+
Sbjct: 345 PEGEVYAAVEAPKGEFGVFVVSNGTNKPYRCKIKAPGFSHLAAMDWMNRGHQLADVSAIL 404
Query: 682 GTQDIVFGEIDR 693
G+ DIVFGE+DR
Sbjct: 405 GSLDIVFGEVDR 416
>gi|409401845|ref|ZP_11251499.1| NADH dehydrogenase subunit D [Acidocella sp. MX-AZ02]
gi|409129482|gb|EKM99333.1| NADH dehydrogenase subunit D [Acidocella sp. MX-AZ02]
Length = 399
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 231/417 (55%), Positives = 300/417 (71%), Gaps = 27/417 (6%)
Query: 277 VIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSL 336
+ E+ S+ +NFGPQHP+AHGVLRLILE++GEV+ + DPHIGLLHR TEKL E ++Y+Q++
Sbjct: 10 IFEVDSHTINFGPQHPSAHGVLRLILEMDGEVIERCDPHIGLLHRGTEKLIEYKSYMQAV 69
Query: 337 PYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLD 396
PY DRLDYVS M EHA+ +A EKLL ++ P RAQ+IRV+F E+TR+LNHL+ IG +LD
Sbjct: 70 PYFDRLDYVSPMGCEHAFALATEKLLGVQAPERAQWIRVLFAELTRVLNHLLAIGHFALD 129
Query: 397 IGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKA 456
GA+ L+ + ERE LL+ YE SGAR H+ Y+RPGGV +DLP
Sbjct: 130 CGAISPSLWMYEEREKLLEFYERASGARFHSNYFRPGGVAKDLP---------------- 173
Query: 457 TKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGF 516
L I + + +PK IDE E LL NRI+KQRLV IGV+S + AL+ GF
Sbjct: 174 ---------AGLEADIAAWADEYPKFIDEMENLLNGNRIFKQRLVDIGVISADEALAWGF 224
Query: 517 TGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCI 576
+GP LRGSGV WDLR+ QPY+ Y + FD+P+GK+GDSYDRYLVR+ EMR+S KI+KQ +
Sbjct: 225 SGPSLRGSGVAWDLRRAQPYDKYAEVEFDVPVGKHGDSYDRYLVRMAEMRESVKIVKQAL 284
Query: 577 KWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
++ GP+ + KIT P R MK +ME LIHHFKL+TEG++VP G Y+ VE PKGE
Sbjct: 285 AKMKP--GPIKVQDRKITPPTRAEMKHSMEALIHHFKLYTEGYHVPAGATYTAVEAPKGE 342
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YL +DG+N+PYR KIRS GFAHLQ+ + GHM++D+V I+G+ DIVFGEIDR
Sbjct: 343 FGVYLQADGSNRPYRCKIRSTGFAHLQAADRLCKGHMLADMVAILGSLDIVFGEIDR 399
>gi|395493001|ref|ZP_10424580.1| NADH dehydrogenase subunit D [Sphingomonas sp. PAMC 26617]
Length = 411
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 222/416 (53%), Positives = 306/416 (73%), Gaps = 26/416 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
+EI++Y +NFGPQHPAAHGVLRL++EL+GE+V + DPH+GLLHR TEKL E +TY+Q+LP
Sbjct: 22 VEIQNYTINFGPQHPAAHGVLRLVMELDGEIVERVDPHVGLLHRGTEKLIEYKTYMQALP 81
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y DRLDY S +C EH YV+A+EKLL++++P+RAQY+RV+F E+TR+ NH++ +GSH +D+
Sbjct: 82 YFDRLDYCSPLCMEHTYVLAVEKLLDLEVPLRAQYLRVLFAELTRISNHMLNLGSHVMDV 141
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GAM L+ F RED ++ +E VSGARMH+AY+RPGGV++D P
Sbjct: 142 GAMTPNLWLFEIREDCMNFFERVSGARMHSAYFRPGGVHQDAP----------------L 185
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
K+L L D+++ R P+ ++ +L+ DNRI+KQR V I VS + A+ GF+
Sbjct: 186 KLL-----ADLADWLD---TRLPRLFEDAISLVADNRIFKQRNVDIATVSRDDAIKWGFS 237
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GPM+RGSG+ WDLRK QPY++Y+ + FD+P+G GD YDR++VR+EE+RQS KI+KQC++
Sbjct: 238 GPMIRGSGIAWDLRKSQPYDVYDRMEFDVPVGTRGDCYDRFMVRVEEVRQSAKIMKQCLR 297
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+ +GP+ S + K+ P R MK +ME LIHHFKL+TEGF+VP G++Y E PKGEF
Sbjct: 298 DM--PEGPIASLDRKVVPPKRAEMKRSMEALIHHFKLYTEGFHVPAGDVYVATESPKGEF 355
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLV+DG NKPYR KIR F+HLQ++ M GHM++D I+G DIVFGE DR
Sbjct: 356 GVYLVADGTNKPYRCKIRPTAFSHLQAMDFMSKGHMLADTTAILGAMDIVFGECDR 411
>gi|372281581|ref|ZP_09517617.1| NADH dehydrogenase subunit D [Oceanicola sp. S124]
Length = 404
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 233/415 (56%), Positives = 301/415 (72%), Gaps = 26/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 16 QIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNLPY 75
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYV+ M EHA+ +AIEKL IP RA IRV+F EI R+LNHL+ + + ++D+G
Sbjct: 76 MDRLDYVAPMNQEHAWCLAIEKLTGTVIPRRASLIRVLFCEIGRILNHLLNVTTQAMDVG 135
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F REDL YE SGAR HAAY+RPGGV++DL +
Sbjct: 136 ALTPPLWGFEPREDLCIFYERASGARFHAAYFRPGGVHQDLTD----------------- 178
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L+D IE++ FP +D+ ++LLT+NRI+KQR V IGVV+ + L GF+G
Sbjct: 179 --------KLIDDIEEWAIEFPAKLDDIDSLLTENRIFKQRNVDIGVVTEQEILDWGFSG 230
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG+ WDLR+ QPYE Y+ +F IP+GKNGD YDRYL R+ EMR+S KI++Q I
Sbjct: 231 VMVRGSGLPWDLRRAQPYECYDEFDFKIPVGKNGDCYDRYLCRMAEMRESVKIMRQAIVK 290
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR G V++ K+T P R MK++ME LIHHFKL+TEGF+VP GE+Y+ VE PKGEFG
Sbjct: 291 LRETPGDVLA-RGKLTPPKRGEMKTSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGEFG 349
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLV+DG NKPYR K+R+PGF HLQ++ + SGH ++DV IIGT DIVFGE+DR
Sbjct: 350 VYLVADGTNKPYRAKLRAPGFLHLQAMDHVASGHQLADVAAIIGTMDIVFGEVDR 404
>gi|300023451|ref|YP_003756062.1| NADH dehydrogenase I subunit D [Hyphomicrobium denitrificans ATCC
51888]
gi|299525272|gb|ADJ23741.1| NADH dehydrogenase I, D subunit [Hyphomicrobium denitrificans ATCC
51888]
Length = 396
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 233/417 (55%), Positives = 304/417 (72%), Gaps = 27/417 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI+++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TY+Q++ Y
Sbjct: 5 EIRNFNINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEHKTYMQAIGY 64
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +A E+LL I +P R Q IRV+F EI R+L+HL+ + + ++D+G
Sbjct: 65 FDRLDYVAPMNQEHAFCLAAERLLGITVPRRGQLIRVLFSEIGRILSHLLNVTTQAMDVG 124
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE SGARMHA Y+R GGV++DLPE
Sbjct: 125 ALTPPLWGFEEREKLMVFYERASGARMHAKYFRIGGVHQDLPE----------------- 167
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L+D I F + F K +D+ + LLT+NRI+KQR V IGVVS + A + GF+G
Sbjct: 168 --------KLIDDIYAFCDPFLKVVDDIDVLLTENRIFKQRNVDIGVVSLDEAFAWGFSG 219
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG WDLRK QPYE Y+ L+FDIPIGKNGD YDRYL+R++EMR+S K++KQC +
Sbjct: 220 VMVRGSGAAWDLRKSQPYECYSELDFDIPIGKNGDCYDRYLIRMQEMRESTKLMKQCCEL 279
Query: 579 LRS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
L+S +GP + N K+ P R MK +ME LIHHFKL+TEGF+VP G++Y+ VE PKGE
Sbjct: 280 LKSPGGQGPHSAENKKVVPPKRGEMKRSMEALIHHFKLYTEGFHVPAGDVYAAVEAPKGE 339
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YLV+DG+NKPYR KIR+PGF HL ++ + GHM++DV IIG+ DIVFGEIDR
Sbjct: 340 FGVYLVADGSNKPYRCKIRAPGFPHLAAMDFLNRGHMLADVSAIIGSLDIVFGEIDR 396
>gi|115524530|ref|YP_781441.1| NADH dehydrogenase subunit D [Rhodopseudomonas palustris BisA53]
gi|122296211|sp|Q07NM3.1|NUOD_RHOP5 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|115518477|gb|ABJ06461.1| NADH dehydrogenase I, D subunit [Rhodopseudomonas palustris BisA53]
Length = 396
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 236/421 (56%), Positives = 307/421 (72%), Gaps = 27/421 (6%)
Query: 275 FPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQ 334
P ++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL EQ+TYLQ
Sbjct: 1 MPEGALRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEQKTYLQ 60
Query: 335 SLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHS 394
++PY DRLDYV+ M EHA+ +A EKLL I +P RAQ IRV++ EI R+L+HL+ + + +
Sbjct: 61 AIPYFDRLDYVAPMNQEHAFCLAAEKLLGIAVPRRAQLIRVLYCEIGRILSHLLNVTTQA 120
Query: 395 LDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNN 454
+D+GA+ L+ F ERE L+ YE SG+RMHAAY+R GGV++DLP PQ
Sbjct: 121 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRIGGVHQDLP---PQ--------- 168
Query: 455 KATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSM 514
L++ IE + + FP+ +D+ + LLT NRI+KQR V IGVV+ +A
Sbjct: 169 -------------LIEDIETWCDAFPQVVDDLDRLLTGNRIFKQRNVDIGVVTLPQAWEW 215
Query: 515 GFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQ 574
GF+G M+RGSG WDLRK QPYE Y ++FD+PIGKNGD YDRYL+R+EEMRQS I+KQ
Sbjct: 216 GFSGVMVRGSGAAWDLRKSQPYECYAEMDFDVPIGKNGDCYDRYLLRMEEMRQSVSIMKQ 275
Query: 575 CIKWLRS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEH 632
CI LR+ +GPV ++KI P R MK +ME LIHHFKL+TEGF VP GE+Y VE
Sbjct: 276 CIAKLRAPDGQGPVALEDHKIVPPRRGEMKRSMEALIHHFKLYTEGFRVPAGEVYVAVEA 335
Query: 633 PKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEID 692
PKGEFG++LVSDG NKPY+ KIR+PGFAHLQ++ + GH+++DV I+G+ DIVFGE+D
Sbjct: 336 PKGEFGVFLVSDGTNKPYKCKIRAPGFAHLQAMDFVTRGHLLADVSAILGSLDIVFGEVD 395
Query: 693 R 693
R
Sbjct: 396 R 396
>gi|146341112|ref|YP_001206160.1| NADH dehydrogenase subunit D [Bradyrhizobium sp. ORS 278]
gi|218534455|sp|A4YVK9.1|NUOD_BRASO RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|146193918|emb|CAL77935.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
(NDH-1, chain D) [Bradyrhizobium sp. ORS 278]
Length = 398
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 232/416 (55%), Positives = 305/416 (73%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 8 LRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIETKTYLQAMPYF 67
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +A E+LL I++P R Q IRV++ EI RLL+HL+ + + ++D+GA
Sbjct: 68 DRLDYVAPMNQEHAFCLAAERLLGIEVPRRGQLIRVLYSEIGRLLSHLLNVTTQAMDVGA 127
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHA Y+R GGV++DLP
Sbjct: 128 LTPPLWGFEEREKLMVFYERASGSRMHANYFRIGGVHQDLPP------------------ 169
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I+ F + F K +D+ + LLT NRI+KQR V IGVV+ ++A GF+G
Sbjct: 170 -------KLVDDIDAFCDPFLKVVDDLDQLLTGNRIFKQRNVDIGVVTLKQAWEWGFSGV 222
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLRK QPY++Y + FDIPIGKNGD YDRYL+R+EEMRQS +I+KQCI L
Sbjct: 223 MVRGSGAAWDLRKSQPYDVYAEMEFDIPIGKNGDCYDRYLIRMEEMRQSVRIMKQCIAKL 282
Query: 580 RS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
R+ +GPV+ +NKI P R MK +ME LIHHFKL+TEG +VP GEIY+ VE PKGEF
Sbjct: 283 RAPDGQGPVLITDNKIAPPRRGEMKRSMEALIHHFKLYTEGVHVPAGEIYAAVEAPKGEF 342
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLV+DG NKPY+ KIR+PGFAHLQ++ + GH+++DV I+G+ DIVFGE+DR
Sbjct: 343 GVYLVADGTNKPYKCKIRAPGFAHLQAMDFLCRGHLLADVSAILGSLDIVFGEVDR 398
>gi|116251469|ref|YP_767307.1| NADH dehydrogenase subunit D [Rhizobium leguminosarum bv. viciae
3841]
gi|218534452|sp|Q1MIL2.1|NUOD_RHIL3 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|115256117|emb|CAK07198.1| putative NADH-quinone oxidoreductase subunit [Rhizobium
leguminosarum bv. viciae 3841]
Length = 396
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 232/416 (55%), Positives = 304/416 (73%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 6 VRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHAY MA+EKLL I+IPIR Q IRV++ EI R+L+HL+ + + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAYAMAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHAAY+RPGGV++DLPE
Sbjct: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDLPE------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+ I + + F K +D+ + LLT NRI+KQR V IGVVS + + GF+G
Sbjct: 168 -------QLVQDIGAWCDPFLKALDDIDNLLTGNRIFKQRNVDIGVVSLDECWAWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLR+ QPYE Y+ L FDIPIGKNGD+YDRYL+R+ EMR+S +I+KQC+ L
Sbjct: 221 MVRGSGAAWDLRRAQPYECYSDLEFDIPIGKNGDNYDRYLIRMIEMRESVRIMKQCVNRL 280
Query: 580 RSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
S+ GP S + K+ P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGEF
Sbjct: 281 LSDAKTGPFSSIDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG NKPYR KIR+PG+AHLQ++ M GH ++DV ++G+ DIVFGE+DR
Sbjct: 341 GVYLVSDGTNKPYRCKIRAPGYAHLQAMDFMCRGHQLADVAAVLGSLDIVFGEVDR 396
>gi|148558949|ref|YP_001258783.1| NADH dehydrogenase subunit D [Brucella ovis ATCC 25840]
gi|161618769|ref|YP_001592656.1| NADH dehydrogenase subunit D [Brucella canis ATCC 23365]
gi|163843078|ref|YP_001627482.1| NADH dehydrogenase subunit D [Brucella suis ATCC 23445]
gi|225627302|ref|ZP_03785339.1| NADH dehydrogenase I, D subunit [Brucella ceti str. Cudo]
gi|225852321|ref|YP_002732554.1| NADH dehydrogenase subunit D [Brucella melitensis ATCC 23457]
gi|256264180|ref|ZP_05466712.1| pectinesterase [Brucella melitensis bv. 2 str. 63/9]
gi|256369237|ref|YP_003106745.1| NADH dehydrogenase subunit D [Brucella microti CCM 4915]
gi|260566631|ref|ZP_05837101.1| NADH-quinone oxidoreductase subunit D [Brucella suis bv. 4 str. 40]
gi|260754559|ref|ZP_05866907.1| NADH dehydrogenase subunit D [Brucella abortus bv. 6 str. 870]
gi|260883586|ref|ZP_05895200.1| NADH-quinone oxidoreductase subunit D [Brucella abortus bv. 9 str.
C68]
gi|261213808|ref|ZP_05928089.1| NADH dehydrogenase subunit D [Brucella abortus bv. 3 str. Tulya]
gi|261218835|ref|ZP_05933116.1| NADH-quinone oxidoreductase subunit D [Brucella ceti M13/05/1]
gi|261221995|ref|ZP_05936276.1| NADH-quinone oxidoreductase subunit D [Brucella ceti B1/94]
gi|261314443|ref|ZP_05953640.1| NADH-quinone oxidoreductase subunit D [Brucella pinnipedialis
M163/99/10]
gi|261317459|ref|ZP_05956656.1| NADH-quinone oxidoreductase subunit D [Brucella pinnipedialis
B2/94]
gi|261321666|ref|ZP_05960863.1| NADH-quinone oxidoreductase subunit D [Brucella ceti M644/93/1]
gi|261752126|ref|ZP_05995835.1| NADH-quinone oxidoreductase subunit D [Brucella suis bv. 5 str.
513]
gi|261754786|ref|ZP_05998495.1| NADH-quinone oxidoreductase subunit D [Brucella suis bv. 3 str.
686]
gi|261758013|ref|ZP_06001722.1| NADH dehydrogenase subunit D [Brucella sp. F5/99]
gi|265988495|ref|ZP_06101052.1| NADH-quinone oxidoreductase subunit D [Brucella pinnipedialis
M292/94/1]
gi|265997959|ref|ZP_06110516.1| NADH-quinone oxidoreductase subunit D [Brucella ceti M490/95/1]
gi|297248159|ref|ZP_06931877.1| NADH dehydrogenase (quinone), D subunit [Brucella abortus bv. 5
str. B3196]
gi|340790436|ref|YP_004755901.1| NADH dehydrogenase subunit delta [Brucella pinnipedialis B2/94]
gi|376274450|ref|YP_005114889.1| NADH dehydrogenase I subunit D [Brucella canis HSK A52141]
gi|384211181|ref|YP_005600263.1| NADH dehydrogenase I subunit D [Brucella melitensis M5-90]
gi|384408281|ref|YP_005596902.1| NADH dehydrogenase subunit D [Brucella melitensis M28]
gi|384444886|ref|YP_005603605.1| NADH dehydrogenase I subunit D [Brucella melitensis NI]
gi|218534393|sp|A9MAI2.1|NUOD_BRUC2 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|218534394|sp|A5VPY6.1|NUOD_BRUO2 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|218534395|sp|B0CLD2.1|NUOD_BRUSI RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|148370206|gb|ABQ60185.1| NADH dehydrogenase I, D subunit [Brucella ovis ATCC 25840]
gi|161335580|gb|ABX61885.1| NADH dehydrogenase I, D subunit [Brucella canis ATCC 23365]
gi|163673801|gb|ABY37912.1| NADH dehydrogenase I, D subunit [Brucella suis ATCC 23445]
gi|225617307|gb|EEH14352.1| NADH dehydrogenase I, D subunit [Brucella ceti str. Cudo]
gi|225640686|gb|ACO00600.1| NADH dehydrogenase I, D subunit [Brucella melitensis ATCC 23457]
gi|255999397|gb|ACU47796.1| NADH dehydrogenase delta subunit [Brucella microti CCM 4915]
gi|260156149|gb|EEW91229.1| NADH-quinone oxidoreductase subunit D [Brucella suis bv. 4 str. 40]
gi|260674667|gb|EEX61488.1| NADH dehydrogenase subunit D [Brucella abortus bv. 6 str. 870]
gi|260873114|gb|EEX80183.1| NADH-quinone oxidoreductase subunit D [Brucella abortus bv. 9 str.
C68]
gi|260915415|gb|EEX82276.1| NADH dehydrogenase subunit D [Brucella abortus bv. 3 str. Tulya]
gi|260920579|gb|EEX87232.1| NADH-quinone oxidoreductase subunit D [Brucella ceti B1/94]
gi|260923924|gb|EEX90492.1| NADH-quinone oxidoreductase subunit D [Brucella ceti M13/05/1]
gi|261294356|gb|EEX97852.1| NADH-quinone oxidoreductase subunit D [Brucella ceti M644/93/1]
gi|261296682|gb|EEY00179.1| NADH-quinone oxidoreductase subunit D [Brucella pinnipedialis
B2/94]
gi|261303469|gb|EEY06966.1| NADH-quinone oxidoreductase subunit D [Brucella pinnipedialis
M163/99/10]
gi|261737997|gb|EEY25993.1| NADH dehydrogenase subunit D [Brucella sp. F5/99]
gi|261741879|gb|EEY29805.1| NADH-quinone oxidoreductase subunit D [Brucella suis bv. 5 str.
513]
gi|261744539|gb|EEY32465.1| NADH-quinone oxidoreductase subunit D [Brucella suis bv. 3 str.
686]
gi|262552427|gb|EEZ08417.1| NADH-quinone oxidoreductase subunit D [Brucella ceti M490/95/1]
gi|263094398|gb|EEZ18243.1| pectinesterase [Brucella melitensis bv. 2 str. 63/9]
gi|264660692|gb|EEZ30953.1| NADH-quinone oxidoreductase subunit D [Brucella pinnipedialis
M292/94/1]
gi|297175328|gb|EFH34675.1| NADH dehydrogenase (quinone), D subunit [Brucella abortus bv. 5
str. B3196]
gi|326408828|gb|ADZ65893.1| NADH dehydrogenase subunit D [Brucella melitensis M28]
gi|326538544|gb|ADZ86759.1| NADH dehydrogenase I, D subunit [Brucella melitensis M5-90]
gi|340558895|gb|AEK54133.1| NADH dehydrogenase, delta subunit [Brucella pinnipedialis B2/94]
gi|349742880|gb|AEQ08423.1| NADH dehydrogenase I, D subunit [Brucella melitensis NI]
gi|363403017|gb|AEW13312.1| NADH dehydrogenase I, D subunit [Brucella canis HSK A52141]
Length = 396
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/417 (54%), Positives = 306/417 (73%), Gaps = 27/417 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 5 QVRNFNINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLMEAKTYLQAVPY 64
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
+DRLDYV+ M EHAY +A+E+LL+I++P R Q IRV++ EI R+LNHL+ + + ++D+G
Sbjct: 65 LDRLDYVAPMNQEHAYALAVERLLDIEVPKRGQLIRVLYSEIGRILNHLLNVTTQAMDVG 124
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE GARMHAAY+RPGGV++DLP+
Sbjct: 125 ALTPPLWGFEEREKLMVFYERACGARMHAAYFRPGGVHQDLPD----------------- 167
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L++ I + + F + + L+T NRI+KQR V IGVV E A + GF+G
Sbjct: 168 --------QLIEDIGKWIDPFFTTLKNLDDLITPNRIFKQRNVDIGVVKLEDAWAWGFSG 219
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG WDLRK QPYE Y+ + FDIP+GKNGD YDRYL+R+EEMRQS +I++QC+
Sbjct: 220 VMVRGSGAAWDLRKSQPYECYSEMEFDIPVGKNGDCYDRYLIRMEEMRQSARIMRQCVDL 279
Query: 579 L--RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
L + GPV + ++KI P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGE
Sbjct: 280 LLGKERVGPVSNTDHKIVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGE 339
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YLVSDG+NKPYR K+R+PGFAHLQ++ + GHM++DV I+G+ DIVFGE+DR
Sbjct: 340 FGVYLVSDGSNKPYRCKLRAPGFAHLQAMDFLCRGHMLADVSAILGSLDIVFGEVDR 396
>gi|49474180|ref|YP_032222.1| NADH dehydrogenase subunit D [Bartonella quintana str. Toulouse]
gi|81696043|sp|Q6FZY8.1|NUOD_BARQU RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|49239684|emb|CAF26059.1| NADH dehydrogenase I, D subunit [Bartonella quintana str. Toulouse]
Length = 396
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 229/418 (54%), Positives = 306/418 (73%), Gaps = 27/418 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
+ ++++ +NFGPQHPAAHGVLR++LEL+GEVV + DPHIGLLHR TEKL E +TYLQ++P
Sbjct: 4 VNVRNFNINFGPQHPAAHGVLRMVLELDGEVVERVDPHIGLLHRGTEKLMETKTYLQAVP 63
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y+DRLDYV+ M EHA+V+AIEKLL +++P R Q IRV+F EI R+LNHL+ + + ++D+
Sbjct: 64 YLDRLDYVAPMNQEHAFVLAIEKLLGVEVPKRGQLIRVLFSEIGRILNHLLNVTTQAMDV 123
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GA+ L+ F +RE L+ YE GAR+HA Y+RPGGV++DLPE
Sbjct: 124 GALTPPLWGFEQRERLMIFYERACGARLHANYFRPGGVHQDLPE---------------- 167
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
SL++ I F + F ++ + L+T NRI+KQR V IGV+S + A GF+
Sbjct: 168 ---------SLIEDIGHFIDPFLISLSRLDALVTPNRIFKQRNVDIGVISIDEAWVRGFS 218
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCI- 576
G M+RG+GV WDLRK QPYE Y+ + FDIP+GKN D YDRYL+R+EEMRQS +I++QC+
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYDEMEFDIPVGKNSDCYDRYLIRMEEMRQSARIMRQCVD 278
Query: 577 KWLRSNK-GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
+ L S K GPV S N K+ P R MKS+ME LIHHFKL+TEGF+ P GE+Y VE PKG
Sbjct: 279 RLLGSEKNGPVSSLNRKVVPPKRSEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFG+YL+SDG NKPYR+K+R+PGFAHLQ++ + GHM++D I+G+ DIVFGE+DR
Sbjct: 339 EFGVYLISDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAILGSIDIVFGEVDR 396
>gi|365890994|ref|ZP_09429470.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
(NDH-1, chain D) [Bradyrhizobium sp. STM 3809]
gi|365333110|emb|CCE02001.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
(NDH-1, chain D) [Bradyrhizobium sp. STM 3809]
Length = 398
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 231/416 (55%), Positives = 305/416 (73%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 8 LRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIETKTYLQAMPYF 67
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +A E+LL I++P R Q IRV++ EI RLL+HL+ + + ++D+GA
Sbjct: 68 DRLDYVAPMNQEHAFCLAAERLLGIEVPRRGQLIRVLYSEIGRLLSHLLNVTTQAMDVGA 127
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHA Y+R GGV++DLP
Sbjct: 128 LTPPLWGFEEREKLMVFYERASGSRMHANYFRIGGVHQDLPP------------------ 169
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I+ F + F K +D+ + LLT NRI+KQR V IGVV+ ++A GF+G
Sbjct: 170 -------KLVDDIDAFCDPFLKVVDDLDQLLTGNRIFKQRNVDIGVVTLKQAWEWGFSGV 222
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLRK QPY++Y + FD+PIGKNGD YDRYL+R+EEMRQS +I+KQCI L
Sbjct: 223 MVRGSGAAWDLRKSQPYDVYAEMEFDVPIGKNGDCYDRYLIRMEEMRQSVRIMKQCIAKL 282
Query: 580 RS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
R+ +GPV+ +NKI P R MK +ME LIHHFKL+TEG +VP GEIY+ VE PKGEF
Sbjct: 283 RAPDGQGPVLVTDNKIAPPRRGEMKRSMEALIHHFKLYTEGVHVPAGEIYAAVEAPKGEF 342
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLV+DG NKPY+ KIR+PGFAHLQ++ + GH+++DV I+G+ DIVFGE+DR
Sbjct: 343 GVYLVADGTNKPYKCKIRAPGFAHLQAMDFLCRGHLLADVSAILGSLDIVFGEVDR 398
>gi|340924183|gb|EGS19086.1| NADH-ubiquinone oxidoreductase 49 kDa subunit-like protein
[Chaetomium thermophilum var. thermophilum DSM 1495]
Length = 506
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 232/422 (54%), Positives = 297/422 (70%), Gaps = 34/422 (8%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E +TY+Q+LPY
Sbjct: 112 KVRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLCEYKTYMQALPY 171
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLNI+IP RA++IR MF EITR+LNHLM + SH++D+G
Sbjct: 172 FDRLDYVSMMTNEQVFSLAVEKLLNIEIPPRAKFIRTMFGEITRILNHLMSVLSHAMDVG 231
Query: 399 AMGVLLYAFREREDLL-------DCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSII 451
A+ L+ F ERE L+ + YE VSGAR+HAAY RPGGV++D+P
Sbjct: 232 ALTPFLWGFEEREKLMKLTIAPKEFYERVSGARLHAAYVRPGGVHQDIPV---------- 281
Query: 452 RNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERA 511
LLD I + +F IDE E +LTDNRIW RL G+GVVS A
Sbjct: 282 ---------------GLLDDIYQWATQFGDRIDETEEMLTDNRIWINRLKGVGVVSAADA 326
Query: 512 LSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKI 571
L++ FTG MLRGSGV WD+RK PY+ Y+ + FD+P+G NGD YDRYL R+EE RQS +I
Sbjct: 327 LNLSFTGVMLRGSGVPWDVRKSSPYDAYDQVEFDVPVGINGDCYDRYLCRMEEFRQSLRI 386
Query: 572 IKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVE 631
I QC+ + + GPV + KIT P R MK NME LIHHF LFT+G+ VP G+ Y+ +E
Sbjct: 387 IHQCLNKMPA--GPVRYEDYKITPPPRAAMKENMEALIHHFLLFTKGYAVPPGDTYTAIE 444
Query: 632 HPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEI 691
PKGE G+Y+VSDG+ +PYR+ IR+PGFAHL + GH+++D V +IGT D+VFGE+
Sbjct: 445 APKGEMGVYVVSDGSERPYRVHIRAPGFAHLSGFDHITRGHLLADAVAVIGTMDLVFGEV 504
Query: 692 DR 693
DR
Sbjct: 505 DR 506
>gi|421850282|ref|ZP_16283245.1| NADH-quinone oxidoreductase chain D [Acetobacter pasteurianus NBRC
101655]
gi|371458874|dbj|GAB28448.1| NADH-quinone oxidoreductase chain D [Acetobacter pasteurianus NBRC
101655]
Length = 426
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 240/451 (53%), Positives = 309/451 (68%), Gaps = 29/451 (6%)
Query: 245 DLFGIFFDGHDDLRRLLTDYGFVGHPFRKDFP--VIEIKSYKLNFGPQHPAAHGVLRLIL 302
+L F + D + R V ++ P V+EI S+ LNFGPQHP+AHGVLRL+L
Sbjct: 3 ELKNTFIETADTVLRQDVPESLVPEKVAEEEPRKVVEIDSHALNFGPQHPSAHGVLRLVL 62
Query: 303 ELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLL 362
E+EGEVV +A PHIGLLHR TEKL E +TY ++LPY DRLDYVS MC E A+ +A EKLL
Sbjct: 63 EMEGEVVARAVPHIGLLHRGTEKLIEYKTYQKALPYFDRLDYVSPMCEEQAFALATEKLL 122
Query: 363 NIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLLYAFREREDLLDCYEAVSG 422
I IP RA+++RVMF EITR+LNH++ + + LD GA+ L+ + ERE LL+ YEA SG
Sbjct: 123 GIDIPERAKWLRVMFAEITRVLNHILNLTAMGLDCGAVTPALWGYEEREKLLEFYEAASG 182
Query: 423 ARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKN 482
AR HA Y+RPGGV RD+P L D I + FPK
Sbjct: 183 ARFHANYFRPGGVARDVP-------------------------AGLEDKIGAWAKEFPKW 217
Query: 483 IDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGSGVKWDLRKKQPYEIYNLL 542
IDE E LLT+NRIWKQR VGIGV + E+AL+ GF+GP LR SGV WDLR+ QPY+ Y+ +
Sbjct: 218 IDELEGLLTENRIWKQRTVGIGVFTTEQALAWGFSGPCLRASGVPWDLRRNQPYDNYHKV 277
Query: 543 NFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKGPVISNNNKITSPARINMK 602
F++P+ + GD YDRYLVR+ EMR+S KII+QC+ +R G V + K + P R MK
Sbjct: 278 EFNVPVARQGDCYDRYLVRVAEMRESVKIIEQCLSQIRP--GDVKVQDPKFSPPPRAEMK 335
Query: 603 SNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHL 662
+ME LIHHFKLF+EG++VP G Y+ VE PKGEFG+YLV+DG+N+PYR KIR GFAHL
Sbjct: 336 RSMEALIHHFKLFSEGYHVPAGATYTAVESPKGEFGVYLVADGSNRPYRCKIRPTGFAHL 395
Query: 663 QSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
Q++ E+ M++D+V IIG+ D+VFGE+DR
Sbjct: 396 QAIDELSRRGMLADMVAIIGSLDLVFGEVDR 426
>gi|23501692|ref|NP_697819.1| NADH dehydrogenase subunit D [Brucella suis 1330]
gi|376280485|ref|YP_005154491.1| NADH dehydrogenase subunit D [Brucella suis VBI22]
gi|384224479|ref|YP_005615643.1| NADH dehydrogenase subunit D [Brucella suis 1330]
gi|81752803|sp|Q8G1B4.1|NUOD_BRUSU RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|23347614|gb|AAN29734.1| NADH dehydrogenase I, D subunit [Brucella suis 1330]
gi|343382659|gb|AEM18151.1| NADH dehydrogenase subunit D [Brucella suis 1330]
gi|358258084|gb|AEU05819.1| NADH dehydrogenase subunit D [Brucella suis VBI22]
Length = 396
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/417 (54%), Positives = 306/417 (73%), Gaps = 27/417 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 5 QVRNFNINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLMEAKTYLQAVPY 64
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
+DRLDYV+ M EHAY +A+E+LL+I++P R Q IRV++ EI R+LNHL+ + + ++D+G
Sbjct: 65 LDRLDYVAPMNQEHAYALAVERLLDIEVPKRGQLIRVLYSEIGRILNHLLNVTTQAMDVG 124
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE GARMHAAY+RPGGV++DLP+
Sbjct: 125 ALTPPLWGFEEREKLMVFYERACGARMHAAYFRPGGVHQDLPD----------------- 167
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L++ I + + F + + L+T NRI+KQR V IGVV E A + GF+G
Sbjct: 168 --------QLIEDIGKWIDPFFTTLKNLDDLITPNRIFKQRNVDIGVVKLEDAWAWGFSG 219
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG WDLRK QPYE Y+ + FDIP+GKNGD YDRYL+R+EEMRQS +I++QC+
Sbjct: 220 VMVRGSGAAWDLRKSQPYECYSEMEFDIPVGKNGDCYDRYLIRMEEMRQSARIMRQCVDL 279
Query: 579 L--RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
L + GPV + ++KI P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGE
Sbjct: 280 LLGKERVGPVSNTDHKIVPPKRGEMKCSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGE 339
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YLVSDG+NKPYR K+R+PGFAHLQ++ + GHM++DV I+G+ DIVFGE+DR
Sbjct: 340 FGVYLVSDGSNKPYRCKLRAPGFAHLQAMDFLCRGHMLADVSAILGSLDIVFGEVDR 396
>gi|398822694|ref|ZP_10581071.1| NADH dehydrogenase I, D subunit [Bradyrhizobium sp. YR681]
gi|398226644|gb|EJN12889.1| NADH dehydrogenase I, D subunit [Bradyrhizobium sp. YR681]
Length = 398
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 230/417 (55%), Positives = 307/417 (73%), Gaps = 27/417 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL EQ+TYLQ++PY
Sbjct: 7 QLRNFTINFGPQHPAAHGVLRLVLELDGEVVARVDPHIGLLHRGTEKLIEQKTYLQAIPY 66
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +A EKLL I++P R Q IRV++ EI R+L+H++ + + ++D+G
Sbjct: 67 FDRLDYVAPMNQEHAFCLAAEKLLGIEVPRRGQLIRVLYCEIGRILSHMLNVTTQAMDVG 126
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE SG+RMHAA++R GGV++DLP+
Sbjct: 127 ALTPPLWGFEEREKLMVFYERASGSRMHAAFFRVGGVHQDLPQ----------------- 169
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L+D IE + + F K +++ + LLT NRI+KQR V IGVV + A GF+G
Sbjct: 170 --------KLVDDIEAWCDPFLKVVEDLDRLLTANRIFKQRNVDIGVVPLKEAWEWGFSG 221
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG WDLRK QPYE Y ++FDIPIGKNGD YDRYL+R+EEMRQS +I+KQCI+
Sbjct: 222 VMVRGSGAAWDLRKSQPYECYAEMDFDIPIGKNGDCYDRYLIRMEEMRQSIRIMKQCIQK 281
Query: 579 LRS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
L + KGPV+ +NK+ P R MK +ME LIHHFKL+TEG +VP GE+Y+ VE PKGE
Sbjct: 282 LNAPDGKGPVVVEDNKVAPPRRGEMKRSMEALIHHFKLYTEGVHVPAGEVYAAVEAPKGE 341
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YL+SDG NKPY+ KIR+PGFAHLQ++ + GH+++DV I+G+ DIVFGE+DR
Sbjct: 342 FGVYLISDGTNKPYKCKIRAPGFAHLQAMDHICRGHLLADVSAILGSLDIVFGEVDR 398
>gi|241204089|ref|YP_002975185.1| NADH dehydrogenase subunit D [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240857979|gb|ACS55646.1| NADH dehydrogenase I, D subunit [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 396
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 233/416 (56%), Positives = 303/416 (72%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 6 VRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHAY MA+EKLL I+IPIR Q IRV++ EI R+L+HL+ + + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAYAMAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHAAY RPGGV++DLPE
Sbjct: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYIRPGGVHQDLPE------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+ I + + F K +D+ + LLT NRI+KQR V IGVVS E + GF+G
Sbjct: 168 -------QLVQDIGAWCDPFLKALDDIDNLLTGNRIFKQRNVDIGVVSLEECWAWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLR+ QPYE Y+ L FDIPIGKNGD+YDRYL+R+ EMR+S +I+KQC+ L
Sbjct: 221 MVRGSGAAWDLRRAQPYECYSDLEFDIPIGKNGDNYDRYLIRMIEMRESVRIMKQCVNRL 280
Query: 580 RSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
S+ GP S + K+ P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGEF
Sbjct: 281 LSDARTGPFSSIDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG NKPYR KIR+PG+AHLQ++ M GH ++DV ++G+ DIVFGE+DR
Sbjct: 341 GVYLVSDGTNKPYRCKIRAPGYAHLQAMDFMCRGHQLADVAAVLGSLDIVFGEVDR 396
>gi|424874780|ref|ZP_18298442.1| NADH dehydrogenase I, D subunit [Rhizobium leguminosarum bv. viciae
WSM1455]
gi|393170481|gb|EJC70528.1| NADH dehydrogenase I, D subunit [Rhizobium leguminosarum bv. viciae
WSM1455]
Length = 396
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 233/416 (56%), Positives = 303/416 (72%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 6 VRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHAY MA+EKLL I+IPIR Q IRV++ EI R+L+HL+ + + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAYAMAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHAAY RPGGV++DLPE
Sbjct: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYIRPGGVHQDLPE------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+ I + + F K +D+ + LLT NRI+KQR V IGVVS E + GF+G
Sbjct: 168 -------QLVQDIGAWCDPFLKALDDIDNLLTGNRIFKQRNVDIGVVSLEECWAWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLR+ QPYE Y+ L FDIPIGKNGD+YDRYL+R+ EMR+S +I+KQC+ L
Sbjct: 221 MVRGSGAAWDLRRAQPYECYSDLEFDIPIGKNGDNYDRYLIRMIEMRESVRIMKQCVNRL 280
Query: 580 RSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
S+ GP S + K+ P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGEF
Sbjct: 281 LSDAKTGPFSSIDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG NKPYR KIR+PG+AHLQ++ M GH ++DV ++G+ DIVFGE+DR
Sbjct: 341 GVYLVSDGTNKPYRCKIRAPGYAHLQAMDFMCRGHQLADVAAVLGSLDIVFGEVDR 396
>gi|170748475|ref|YP_001754735.1| NADH dehydrogenase I subunit D [Methylobacterium radiotolerans JCM
2831]
gi|218534418|sp|B1LUN4.1|NUOD_METRJ RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|170654997|gb|ACB24052.1| NADH dehydrogenase I, D subunit [Methylobacterium radiotolerans JCM
2831]
Length = 396
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 231/416 (55%), Positives = 303/416 (72%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
I+++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TYLQ+ PY
Sbjct: 6 IRNFAINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEYKTYLQATPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVS M EHA+ +AIEKL I++P RAQ IRV+F EI RLL+HL+ + + ++D+GA
Sbjct: 66 DRLDYVSPMNQEHAFCLAIEKLAGIEVPRRAQLIRVLFCEIGRLLSHLLNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SGAR+HA Y+RPGGV++DLP
Sbjct: 126 LTPPLWGFEEREKLMIFYERASGARLHANYFRPGGVHQDLPP------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I+ F + F + + + + L+ NRI+KQR V IG+VS + A+ GF+G
Sbjct: 168 -------KLIDDIDAFCDPFLQVVQDLDDLVMANRIFKQRNVDIGIVSVDEAMQWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG+ WDLRK QPYE Y + FD+P+GKNGD+YDR ++R+EEMRQS +I+KQC+ L
Sbjct: 221 MVRGSGIPWDLRKAQPYECYEEMEFDVPVGKNGDTYDRQVIRMEEMRQSVRIMKQCVAKL 280
Query: 580 R--SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
R + +GP+ S + K P R MK +ME LIHHFKL+TEGF+VP GE+Y+ VE PKGEF
Sbjct: 281 REPAGQGPIASVDGKFAPPPRREMKRSMEALIHHFKLYTEGFHVPEGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG NKPYR KIR+PGFAHLQ++ M GH+++DV ++GT DIVFGE+DR
Sbjct: 341 GVYLVSDGTNKPYRCKIRAPGFAHLQAMDWMCRGHLLADVSCVLGTLDIVFGEVDR 396
>gi|322708966|gb|EFZ00543.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Metarhizium
anisopliae ARSEF 23]
Length = 468
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 230/412 (55%), Positives = 296/412 (71%), Gaps = 27/412 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E ++YLQ+LPY
Sbjct: 83 KVRHYTVNFGPQHPAAHGVLRLILELNGEEIIRADPHVGLLHRGTEKLIEYKSYLQALPY 142
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLNI+IP RA+YIR +F EITR+LNHLM + SH++D+G
Sbjct: 143 FDRLDYVSMMTNEQCFALAVEKLLNIEIPDRAKYIRTLFGEITRVLNHLMSVLSHAMDVG 202
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV++D+P
Sbjct: 203 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPV----------------- 245
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E +LTDNRIW +RL G+GVVS AL++ FTG
Sbjct: 246 --------GLLDDIYQWATQFGDRIDETEEMLTDNRIWIERLRGVGVVSAADALNLSFTG 297
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y+ + FD+P+GKNGD YDRYL R+EE RQS +II QC+
Sbjct: 298 VMLRGSGVPWDIRKSQPYDAYDKVEFDVPVGKNGDCYDRYLCRMEEFRQSLRIIHQCLNQ 357
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + K++ P R MK NME LIHHF L+T+G+ VP GE YS +E PKGE G
Sbjct: 358 MPA--GPVRVEDYKVSPPPRTAMKENMEALIHHFLLYTKGYAVPPGETYSVIEAPKGEMG 415
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGE 690
+Y+VSDG+ +PYR IR+PGFAHL + GH+++D V +IGT D+VFG+
Sbjct: 416 VYVVSDGSERPYRCHIRAPGFAHLGGFDHVSKGHLLADAVAVIGTMDLVFGK 467
>gi|342874389|gb|EGU76403.1| hypothetical protein FOXB_13081 [Fusarium oxysporum Fo5176]
Length = 468
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 229/415 (55%), Positives = 297/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E +TYLQ+LPY
Sbjct: 81 KVRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYLQALPY 140
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLN++IP RA++IR +F EITR+LNHLM + SH++D+G
Sbjct: 141 FDRLDYVSMMTNEQCFSLAVEKLLNVEIPERAKFIRTLFGEITRILNHLMSVLSHAMDVG 200
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV++D+P
Sbjct: 201 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPV----------------- 243
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E +LTDNRIW +RL G+GVV AL++ FTG
Sbjct: 244 --------GLLDDIYQWATQFGDRIDETEEMLTDNRIWIERLRGVGVVPATEALNLSFTG 295
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV +D+RK QPY+ Y+ + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 296 VMLRGSGVPFDVRKNQPYDAYDQVEFDVPVGTNGDCYDRYLCRMEEFRQSLRIIHQCLNK 355
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + K++ P R MK NME LIHHF L+T+G+ VP GE YS +E PKGE G
Sbjct: 356 MPA--GPVRVEDYKVSPPPRSAMKENMEALIHHFLLYTKGYAVPPGETYSAIEAPKGEMG 413
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDG+ +PYR IR+PGFAHL + GH+++D V +IGT D+VFGE+DR
Sbjct: 414 VYVVSDGSERPYRCHIRAPGFAHLGGFDHVSKGHLLADAVAVIGTMDLVFGEVDR 468
>gi|404253327|ref|ZP_10957295.1| NADH dehydrogenase subunit D [Sphingomonas sp. PAMC 26621]
Length = 411
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 222/416 (53%), Positives = 306/416 (73%), Gaps = 26/416 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
+EI++Y +NFGPQHPAAHGVLRL++EL+GE+V + DPH+GLLHR TEKL E +TY+Q+LP
Sbjct: 22 VEIQNYTINFGPQHPAAHGVLRLVMELDGEIVERVDPHVGLLHRGTEKLIEYKTYMQALP 81
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y DRLDY S +C EH YV+A+EKLL++++P+RAQY+RV+F E+TR+ NH++ +GSH +D+
Sbjct: 82 YFDRLDYCSPLCMEHTYVLAVEKLLDLEVPLRAQYLRVLFAELTRISNHMLNLGSHVMDV 141
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GAM L+ F RED ++ +E VSGARMH+AY+RPGGV++D P
Sbjct: 142 GAMTPNLWLFEIREDCMNFFERVSGARMHSAYFRPGGVHQDAP----------------L 185
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
K+L L D+++ R P+ ++ +L+ DNRI+KQR V I VS + A+ GF+
Sbjct: 186 KLL-----ADLADWLD---TRLPRLFEDAISLVADNRIFKQRNVDIATVSRDDAIKWGFS 237
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GPM+RGSG+ WDLRK QPY++Y+ + FD+P+G GD YDR++VR+EE+RQS KI+KQC++
Sbjct: 238 GPMIRGSGIAWDLRKSQPYDVYDRMEFDVPVGTRGDCYDRFMVRVEEVRQSAKIMKQCLR 297
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+ +GP+ S + K+ P R MK +ME LIHHFKL+TEGF+VP G++Y E PKGEF
Sbjct: 298 DM--PEGPIASLDRKVVPPKRAEMKRSMEALIHHFKLYTEGFHVPAGDVYVATESPKGEF 355
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLV+DG NKPYR KIR F+HLQ++ M GHM++D I+G DIVFGE DR
Sbjct: 356 GVYLVADGTNKPYRCKIRPTAFSHLQAMDFMSKGHMLADTTAILGAMDIVFGECDR 411
>gi|451942055|ref|YP_007462692.1| NADH dehydrogenase subunit D [Bartonella vinsonii subsp. berkhoffii
str. Winnie]
gi|451901442|gb|AGF75904.1| NADH dehydrogenase subunit D [Bartonella vinsonii subsp. berkhoffii
str. Winnie]
Length = 396
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 229/418 (54%), Positives = 306/418 (73%), Gaps = 27/418 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
+ ++++ +NFGPQHPAAHGVLR++LEL+GEVV + DPHIGLLHR TEKL E +TYLQ+ P
Sbjct: 4 VNVRNFNINFGPQHPAAHGVLRMVLELDGEVVERVDPHIGLLHRGTEKLMETKTYLQAGP 63
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y+DRLDYV+ M EHA+V+A+EKLL +++P R Q IRV+F EI R+LNHL+ + + ++D+
Sbjct: 64 YLDRLDYVAPMNQEHAFVLAVEKLLGVEVPKRGQLIRVLFSEIGRILNHLLNVTTQAMDV 123
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GA+ L+ F +RE L+ YE GAR+HA Y+RPGGV++DLPE
Sbjct: 124 GALTPPLWGFEQRERLMIFYERACGARLHANYFRPGGVHQDLPE---------------- 167
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
SL++ I +F + F + + + L+T NRI+KQR V IGVV+ + A + GF+
Sbjct: 168 ---------SLIEDIGNFIDPFLIALGKLDALVTPNRIFKQRNVDIGVVNIDEAWARGFS 218
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
G M+RG+GV WDLRK QPYE Y+ + FDIP+GKN D YDRYL+R+EEMRQS KI++QC+
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYDEMEFDIPVGKNSDCYDRYLIRMEEMRQSAKIMRQCVD 278
Query: 578 WLRSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
L S + GPV S + KI P R MKS+ME LIHHFKL+TEGF+ P GE+Y VE PKG
Sbjct: 279 RLLSTEKSGPVSSLDCKIVPPKRSEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFG+YLVSDG NKPYR+K+R+PGFAHLQ++ + GHM++D I+G+ DIVFGE+DR
Sbjct: 339 EFGVYLVSDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAILGSIDIVFGEVDR 396
>gi|294852162|ref|ZP_06792835.1| NADH dehydrogenase [Brucella sp. NVSL 07-0026]
gi|294820751|gb|EFG37750.1| NADH dehydrogenase [Brucella sp. NVSL 07-0026]
Length = 396
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/417 (54%), Positives = 305/417 (73%), Gaps = 27/417 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 5 QVRNFNINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLMEAKTYLQAVPY 64
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
+DRLDYV+ M EHAY +A+E+LL+I++P R Q IRV++ EI R+LNHL+ + + ++D+G
Sbjct: 65 LDRLDYVAPMNQEHAYALAVERLLDIEVPKRGQLIRVLYSEIGRILNHLLNVTTQAMDVG 124
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE GARMHAAY+RPGGV++DLP+
Sbjct: 125 ALTPPLWGFEEREKLMVFYERACGARMHAAYFRPGGVHQDLPD----------------- 167
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L++ I + + F + L+T NRI+KQR V IGVV E A + GF+G
Sbjct: 168 --------QLIEDIGKWIDPFFTTLKNLHDLITPNRIFKQRNVDIGVVKLEDAWAWGFSG 219
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG WDLRK QPYE Y+ + FDIP+GKNGD YDRYL+R+EEMRQS +I++QC+
Sbjct: 220 VMVRGSGAAWDLRKSQPYECYSEMEFDIPVGKNGDCYDRYLIRMEEMRQSARIMRQCVDL 279
Query: 579 L--RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
L + GPV + ++KI P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGE
Sbjct: 280 LLGKERVGPVSNTDHKIVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGE 339
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YLVSDG+NKPYR K+R+PGFAHLQ++ + GHM++DV I+G+ DIVFGE+DR
Sbjct: 340 FGVYLVSDGSNKPYRCKLRAPGFAHLQAMDFLCRGHMLADVSAILGSLDIVFGEVDR 396
>gi|393771612|ref|ZP_10360081.1| NADH dehydrogenase I subunit D [Novosphingobium sp. Rr 2-17]
gi|392722864|gb|EIZ80260.1| NADH dehydrogenase I subunit D [Novosphingobium sp. Rr 2-17]
Length = 403
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 221/414 (53%), Positives = 302/414 (72%), Gaps = 26/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
I +Y +NFGPQHPAAHGVLR+++EL+GE++ + DPH+GLLHR TEKL E +TYLQ+LPY
Sbjct: 16 ITNYTINFGPQHPAAHGVLRMVMELDGEIIERIDPHVGLLHRGTEKLIEHKTYLQALPYF 75
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDY S + EH+YV+AIEKLLN+++P+RAQY+RVMF E+TR+ NH++ IGSH +D+GA
Sbjct: 76 DRLDYCSPLAMEHSYVLAIEKLLNLEVPLRAQYLRVMFAELTRICNHMLNIGSHVMDVGA 135
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M L+ F RED L+ +E SGARMH+A++RPGGV++D+P +
Sbjct: 136 MTPNLWLFEIREDCLNFFERASGARMHSAWFRPGGVHQDVPLKL---------------- 179
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L D + R P+ ++ +L+ DNRI+KQR V I + S E +L+ GF+GP
Sbjct: 180 --------LTDIADWLDTRLPRLFEDAMSLVVDNRIFKQRNVDIAITSKEDSLAWGFSGP 231
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+R +G+ WDLRK QPY++Y+ ++F+IP+G N D YDR++VR+EE+RQS KI+KQC++ +
Sbjct: 232 MIRAAGIAWDLRKSQPYDVYDRMDFEIPVGTNSDCYDRFMVRVEEVRQSAKIMKQCLRDM 291
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+GPV S++ K+ P R MKS+ME LIHHFKL+TEGF+VP GE+Y E PKGEFG+
Sbjct: 292 --PEGPVSSDDRKVVPPKRAEMKSSMESLIHHFKLYTEGFHVPAGEVYVATESPKGEFGV 349
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+NKPYR KIR F+HLQ++ M GHM+ D I+G D+VFGE DR
Sbjct: 350 YLVSDGSNKPYRCKIRPTAFSHLQAMDFMSKGHMLPDATAILGAIDVVFGECDR 403
>gi|265983901|ref|ZP_06096636.1| NADH-quinone oxidoreductase subunit D [Brucella sp. 83/13]
gi|306838238|ref|ZP_07471090.1| NADH dehydrogenase I, D subunit [Brucella sp. NF 2653]
gi|306841957|ref|ZP_07474634.1| NADH dehydrogenase I, D subunit [Brucella sp. BO2]
gi|306843742|ref|ZP_07476341.1| NADH dehydrogenase I, D subunit [Brucella inopinata BO1]
gi|264662493|gb|EEZ32754.1| NADH-quinone oxidoreductase subunit D [Brucella sp. 83/13]
gi|306275933|gb|EFM57646.1| NADH dehydrogenase I, D subunit [Brucella inopinata BO1]
gi|306287948|gb|EFM59359.1| NADH dehydrogenase I, D subunit [Brucella sp. BO2]
gi|306406682|gb|EFM62909.1| NADH dehydrogenase I, D subunit [Brucella sp. NF 2653]
Length = 396
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/417 (54%), Positives = 305/417 (73%), Gaps = 27/417 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 5 QVRNFNINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLMEAKTYLQAVPY 64
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
+DRLDYV+ M EHAY +A+E+LL I++P R Q IRV++ EI R+LNHL+ + + ++D+G
Sbjct: 65 LDRLDYVAPMNQEHAYALAVERLLGIEVPKRGQLIRVLYSEIGRILNHLLNVTTQAMDVG 124
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE GARMHAAY+RPGGV++DLP+
Sbjct: 125 ALTPPLWGFEEREKLMVFYERACGARMHAAYFRPGGVHQDLPD----------------- 167
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L++ I + + F + + L+T NRI+KQR V IGVV E A + GF+G
Sbjct: 168 --------QLIEDIGKWIDPFFTTLKNLDDLITPNRIFKQRNVDIGVVKLEDAWAWGFSG 219
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG WDLRK QPYE Y+ + FDIP+GKNGD YDRYL+R+EEMRQS +I++QC+
Sbjct: 220 VMVRGSGAAWDLRKSQPYECYSEMEFDIPVGKNGDCYDRYLIRMEEMRQSARIMRQCVDL 279
Query: 579 L--RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
L + GPV + ++KI P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGE
Sbjct: 280 LLGKERVGPVSNTDHKIVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGE 339
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YLVSDG+NKPYR K+R+PGFAHLQ++ + GHM++DV I+G+ DIVFGE+DR
Sbjct: 340 FGVYLVSDGSNKPYRCKLRAPGFAHLQAMDFLCRGHMLADVSAILGSLDIVFGEVDR 396
>gi|17987438|ref|NP_540072.1| NADH dehydrogenase subunit D [Brucella melitensis bv. 1 str. 16M]
gi|260563838|ref|ZP_05834324.1| NADH-quinone oxidoreductase subunit D [Brucella melitensis bv. 1
str. 16M]
gi|265990908|ref|ZP_06103465.1| NADH-quinone oxidoreductase subunit D [Brucella melitensis bv. 1
str. Rev.1]
gi|81851726|sp|Q8YGK3.1|NUOD_BRUME RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|17983131|gb|AAL52336.1| NADH-quinone oxidoreductase chain d [Brucella melitensis bv. 1 str.
16M]
gi|260153854|gb|EEW88946.1| NADH-quinone oxidoreductase subunit D [Brucella melitensis bv. 1
str. 16M]
gi|263001692|gb|EEZ14267.1| NADH-quinone oxidoreductase subunit D [Brucella melitensis bv. 1
str. Rev.1]
Length = 396
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/417 (54%), Positives = 306/417 (73%), Gaps = 27/417 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 5 QVRNFNINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLMEAKTYLQAVPY 64
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
+DRLDYV+ M EHAY +A+E+LL+I++P R Q IRV++ EI R+LNHL+ + + ++D+G
Sbjct: 65 LDRLDYVAPMNQEHAYALAVERLLDIEVPKRGQLIRVLYSEIGRILNHLLNVTTQAMDVG 124
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE GARMHAAY+RPGGV++DLP+
Sbjct: 125 ALTPPLWGFEEREKLMVFYERACGARMHAAYFRPGGVHQDLPD----------------- 167
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L++ I + + F + + L+T NRI+KQR V IGVV E A + GF+G
Sbjct: 168 --------QLIEDIGKWIDPFFTTLKNLDDLITPNRIFKQRNVDIGVVKLEDAWAWGFSG 219
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG WDLRK QPYE Y+ + FDIP+GKNGD YDRYL+R+EEMRQS +I++QC+
Sbjct: 220 VMVRGSGAAWDLRKSQPYECYSEMEFDIPVGKNGDCYDRYLIRMEEMRQSVRIMRQCVDL 279
Query: 579 L--RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
L + GPV + ++KI P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGE
Sbjct: 280 LLGKERVGPVSNTDHKIVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGE 339
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YLVSDG+NKPYR K+R+PGFAHLQ++ + GHM++DV I+G+ DIVFGE+DR
Sbjct: 340 FGVYLVSDGSNKPYRCKLRAPGFAHLQAMDFLCRGHMLADVSAILGSLDIVFGEVDR 396
>gi|424881059|ref|ZP_18304691.1| NADH dehydrogenase I, D subunit [Rhizobium leguminosarum bv.
trifolii WU95]
gi|392517422|gb|EIW42154.1| NADH dehydrogenase I, D subunit [Rhizobium leguminosarum bv.
trifolii WU95]
Length = 396
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 233/416 (56%), Positives = 303/416 (72%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 6 VRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHAY MA+EKLL I+IPIR Q IRV++ EI R+L+HL+ + + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAYAMAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHAAY RPGGV++DLPE
Sbjct: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYIRPGGVHQDLPE------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+ I + + F K +D+ + LLT NRI+KQR V IGVVS E + GF+G
Sbjct: 168 -------QLVQDIGAWCDPFLKALDDIDNLLTGNRIFKQRNVDIGVVSLEECWAWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLR+ QPYE Y+ L FDIPIGKNGD+YDRYL+R+ EMR+S +I+KQC+ L
Sbjct: 221 MVRGSGAAWDLRRAQPYECYSDLEFDIPIGKNGDNYDRYLIRMIEMRESIRIMKQCVNRL 280
Query: 580 RSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
S+ GP S + K+ P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGEF
Sbjct: 281 LSDAKTGPFSSIDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG NKPYR KIR+PG+AHLQ++ M GH ++DV ++G+ DIVFGE+DR
Sbjct: 341 GVYLVSDGTNKPYRCKIRAPGYAHLQAMDFMCRGHQLADVAAVLGSLDIVFGEVDR 396
>gi|421853773|ref|ZP_16286432.1| NADH-quinone oxidoreductase chain D [Acetobacter pasteurianus
subsp. pasteurianus LMG 1262 = NBRC 106471]
gi|371477991|dbj|GAB31635.1| NADH-quinone oxidoreductase chain D [Acetobacter pasteurianus
subsp. pasteurianus LMG 1262 = NBRC 106471]
Length = 426
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 240/451 (53%), Positives = 309/451 (68%), Gaps = 29/451 (6%)
Query: 245 DLFGIFFDGHDDLRRLLTDYGFVGHPFRKDFP--VIEIKSYKLNFGPQHPAAHGVLRLIL 302
+L F + D + R V ++ P V+EI S+ LNFGPQHP+AHGVLRL+L
Sbjct: 3 ELKNTFIETADTVLRQDVPESLVPEKVAEEEPRKVVEIDSHALNFGPQHPSAHGVLRLVL 62
Query: 303 ELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLL 362
E+EGEVV +A PHIGLLHR TEKL E +TY ++LPY DRLDYVS MC E A+ +A EKLL
Sbjct: 63 EMEGEVVARAVPHIGLLHRGTEKLIEYKTYQKALPYFDRLDYVSPMCEEQAFALATEKLL 122
Query: 363 NIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLLYAFREREDLLDCYEAVSG 422
I IP RA+++RVMF EITR+LNH++ + + LD GA+ L+ + ERE LL+ YEA SG
Sbjct: 123 GIDIPERAKWLRVMFAEITRVLNHILNLTAMGLDCGAVTPALWGYEEREKLLEFYEAASG 182
Query: 423 ARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKN 482
AR HA Y+RPGGV RD+P L D I + FPK
Sbjct: 183 ARFHANYFRPGGVARDVP-------------------------AGLEDKIGAWAKEFPKW 217
Query: 483 IDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGSGVKWDLRKKQPYEIYNLL 542
IDE E LLT+NRIWKQR VGIGV + E+AL+ GF+GP LR SGV WDLR+ QPY+ Y+ +
Sbjct: 218 IDELEGLLTENRIWKQRTVGIGVFTTEQALAWGFSGPCLRASGVPWDLRRNQPYDNYHKV 277
Query: 543 NFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKGPVISNNNKITSPARINMK 602
F++P+ + GD YDRYLVR+ EMR+S KII+QC+ +R G V + K + P R MK
Sbjct: 278 EFNVPVARQGDCYDRYLVRVAEMRESVKIIEQCLSQIRP--GDVKVQDPKFSPPPRAEMK 335
Query: 603 SNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHL 662
+ME LIHHFKLF+EG++VP G Y+ VE PKGEFG+YLV+DG+N+PYR KIR GFAHL
Sbjct: 336 RSMEALIHHFKLFSEGYHVPPGATYTAVESPKGEFGVYLVADGSNRPYRCKIRPTGFAHL 395
Query: 663 QSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
Q++ E+ M++D+V IIG+ D+VFGE+DR
Sbjct: 396 QAIDELSRRGMLADMVAIIGSLDLVFGEVDR 426
>gi|171696334|ref|XP_001913091.1| hypothetical protein [Podospora anserina S mat+]
gi|170948409|emb|CAP60573.1| unnamed protein product [Podospora anserina S mat+]
Length = 512
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 229/415 (55%), Positives = 298/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E +TYLQ+LPY
Sbjct: 125 KVRHYTVNFGPQHPAAHGVLRLILELSGEEIVRADPHVGLLHRGTEKLCEYKTYLQALPY 184
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLN++IP RA++IR +F EITR+LNHLM + SH++D+G
Sbjct: 185 FDRLDYVSMMTNEQCFSLAVEKLLNVEIPERAKFIRTLFGEITRILNHLMSVLSHAMDVG 244
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV++D+P
Sbjct: 245 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPM----------------- 287
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E +LTDNRIW RL G+GVVS A+++ FTG
Sbjct: 288 --------GLLDDIYQWATQFGDRIDETEEMLTDNRIWINRLKGVGVVSAAEAINLSFTG 339
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV +D+RK QPY+ Y+ + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 340 VMLRGSGVPFDIRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNK 399
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + KI+ P R MK NME LIHHF L+T+G+ VP G+ YS +E PKGE G
Sbjct: 400 MPA--GPVRVEDYKISPPPRSAMKENMEALIHHFLLYTKGYAVPPGDTYSAIEAPKGEMG 457
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDG+ +PYR+ IR+PGFAHL + GH+++D V +IGT D+VFGE+DR
Sbjct: 458 VYVVSDGSERPYRVHIRAPGFAHLGGFDHISKGHLLADAVAVIGTMDLVFGEVDR 512
>gi|357977047|ref|ZP_09141018.1| NADH dehydrogenase subunit D [Sphingomonas sp. KC8]
Length = 408
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/416 (54%), Positives = 304/416 (73%), Gaps = 26/416 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
+EI++Y +NFGPQHPAAHGVLRL+LE++GE+V +ADPH+GLLHR TEKL E +TYLQ+LP
Sbjct: 19 LEIQNYTINFGPQHPAAHGVLRLVLEMDGEIVERADPHVGLLHRGTEKLIEYKTYLQALP 78
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y DRLDY S + EH+YV+A+EKLL I++P RAQY+RV+F E+TR+ NH++ +GSH +D+
Sbjct: 79 YFDRLDYCSPLGMEHSYVLAVEKLLGIEVPERAQYLRVLFAELTRICNHMLNLGSHVMDV 138
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GAM L+ F RED L +E SGARMHAA++RPGGV++D+P
Sbjct: 139 GAMTPNLWMFEIREDCLGFFERASGARMHAAWFRPGGVHQDVP----------------L 182
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
K+L + G LD R PK ++ +L+ DNRI+KQR V I VVS E A+ GF+
Sbjct: 183 KLLTDI--GDWLD------TRLPKLFEDAISLVADNRIFKQRNVDIAVVSKEDAVKWGFS 234
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GPM+RGSG+ WD+RK QPY+ Y+ + FD+P+G GD YDR++VR+EE+RQS +I+KQC++
Sbjct: 235 GPMIRGSGIPWDIRKSQPYDAYDKVEFDVPVGTKGDCYDRFMVRVEEVRQSARIMKQCLQ 294
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+ +GP+ S + K+ P R MK +ME LIHHFKL+TEGF+VP GE+Y E PKGEF
Sbjct: 295 QM--PEGPIASLDRKVVPPKRGEMKRSMEALIHHFKLYTEGFHVPAGEVYVATESPKGEF 352
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG NKPYR KIR F+HLQ++ M GHM++D+ I+G DIVFGE DR
Sbjct: 353 GVYLVSDGTNKPYRCKIRPTAFSHLQAMDFMAKGHMLADITAILGAMDIVFGECDR 408
>gi|258542719|ref|YP_003188152.1| NADH dehydrogenase subunit D [Acetobacter pasteurianus IFO 3283-01]
gi|384042640|ref|YP_005481384.1| NADH-quinone oxidoreductase subunit D [Acetobacter pasteurianus IFO
3283-12]
gi|384051157|ref|YP_005478220.1| NADH-quinone oxidoreductase subunit D [Acetobacter pasteurianus IFO
3283-03]
gi|384054265|ref|YP_005487359.1| NADH-quinone oxidoreductase subunit D [Acetobacter pasteurianus IFO
3283-07]
gi|384057499|ref|YP_005490166.1| NADH-quinone oxidoreductase subunit D [Acetobacter pasteurianus IFO
3283-22]
gi|384060140|ref|YP_005499268.1| NADH-quinone oxidoreductase subunit D [Acetobacter pasteurianus IFO
3283-26]
gi|384063432|ref|YP_005484074.1| NADH-quinone oxidoreductase subunit D [Acetobacter pasteurianus IFO
3283-32]
gi|384119442|ref|YP_005502066.1| NADH-quinone oxidoreductase subunit D [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256633797|dbj|BAH99772.1| NADH-quinone oxidoreductase chain D [Acetobacter pasteurianus IFO
3283-01]
gi|256636856|dbj|BAI02825.1| NADH-quinone oxidoreductase chain D [Acetobacter pasteurianus IFO
3283-03]
gi|256639909|dbj|BAI05871.1| NADH-quinone oxidoreductase chain D [Acetobacter pasteurianus IFO
3283-07]
gi|256642965|dbj|BAI08920.1| NADH-quinone oxidoreductase chain D [Acetobacter pasteurianus IFO
3283-22]
gi|256646020|dbj|BAI11968.1| NADH-quinone oxidoreductase chain D [Acetobacter pasteurianus IFO
3283-26]
gi|256649073|dbj|BAI15014.1| NADH-quinone oxidoreductase chain D [Acetobacter pasteurianus IFO
3283-32]
gi|256652060|dbj|BAI17994.1| NADH-quinone oxidoreductase chain D [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256655117|dbj|BAI21044.1| NADH-quinone oxidoreductase chain D [Acetobacter pasteurianus IFO
3283-12]
Length = 426
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 240/451 (53%), Positives = 309/451 (68%), Gaps = 29/451 (6%)
Query: 245 DLFGIFFDGHDDLRRLLTDYGFVGHPFRKDFP--VIEIKSYKLNFGPQHPAAHGVLRLIL 302
+L F + D + R V ++ P V+EI S+ LNFGPQHP+AHGVLRL+L
Sbjct: 3 ELKNTFIETADTVLRQDVPESLVPEKVAEEEPRKVVEIDSHALNFGPQHPSAHGVLRLVL 62
Query: 303 ELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLL 362
E+EGEVV +A PHIGLLHR TEKL E +TY ++LPY DRLDYVS MC E A+ +A EKLL
Sbjct: 63 EMEGEVVARAVPHIGLLHRGTEKLIEYKTYQKALPYFDRLDYVSPMCEEQAFALATEKLL 122
Query: 363 NIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLLYAFREREDLLDCYEAVSG 422
I IP RA+++RVMF EITR+LNH++ + + LD GA+ L+ + ERE LL+ YEA SG
Sbjct: 123 GIDIPERAKWLRVMFAEITRVLNHILNLTAMGLDCGAVTPALWGYEEREKLLEFYEAASG 182
Query: 423 ARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKN 482
AR HA Y+RPGGV RD+P L D I + FPK
Sbjct: 183 ARFHANYFRPGGVARDVP-------------------------AGLEDKIGAWAKEFPKW 217
Query: 483 IDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGSGVKWDLRKKQPYEIYNLL 542
IDE E LLT+NRIWKQR VGIGV + E+AL+ GF+GP LR SGV WDLR+ QPY+ Y+ +
Sbjct: 218 IDELEGLLTENRIWKQRTVGIGVFTTEQALAWGFSGPCLRASGVPWDLRRNQPYDNYHKV 277
Query: 543 NFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKGPVISNNNKITSPARINMK 602
F++P+ + GD YDRYLVR+ EMR+S KII+QC+ +R G V + K + P R MK
Sbjct: 278 EFNVPVARQGDCYDRYLVRVAEMRESVKIIEQCLTQIRP--GDVKVQDPKFSPPPRAEMK 335
Query: 603 SNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHL 662
+ME LIHHFKLF+EG++VP G Y+ VE PKGEFG+YLV+DG+N+PYR KIR GFAHL
Sbjct: 336 RSMEALIHHFKLFSEGYHVPPGATYTAVESPKGEFGVYLVADGSNRPYRCKIRPTGFAHL 395
Query: 663 QSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
Q++ E+ M++D+V IIG+ D+VFGE+DR
Sbjct: 396 QAIDELSRRGMLADMVAIIGSLDLVFGEVDR 426
>gi|27380027|ref|NP_771556.1| NADH dehydrogenase subunit D [Bradyrhizobium japonicum USDA 110]
gi|81736773|sp|Q89KI9.1|NUOD_BRAJA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|27353181|dbj|BAC50181.1| NADH ubiquinone oxidoreductase chain D [Bradyrhizobium japonicum
USDA 110]
Length = 398
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 230/416 (55%), Positives = 306/416 (73%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL EQ+TYLQ++PY
Sbjct: 8 LRNFTINFGPQHPAAHGVLRLVLELDGEIVARVDPHIGLLHRGTEKLIEQKTYLQAIPYF 67
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +A EKLL I++P R Q IRV++ EI R+L+HL+ + + ++D+GA
Sbjct: 68 DRLDYVAPMNQEHAFCLAAEKLLGIEVPRRGQLIRVLYCEIGRILSHLLNVTTQAMDVGA 127
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHAA++R GGV++DLP+
Sbjct: 128 LTPPLWGFEEREKLMVFYERASGSRMHAAFFRVGGVHQDLPQ------------------ 169
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D IE + + F K +D+ + LLT NRI+KQR V IGVV + A GF+G
Sbjct: 170 -------KLVDDIEAWCDPFLKVVDDLDRLLTANRIFKQRNVDIGVVPLKEAWEWGFSGV 222
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLRK QPYE Y ++FDIPIGKNGD YDRYL+R+EEMRQS +I++QCI+ L
Sbjct: 223 MVRGSGAAWDLRKSQPYECYAEMDFDIPIGKNGDCYDRYLIRMEEMRQSVRIMRQCIQKL 282
Query: 580 RS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+ KGPV+ +NK+ P R MK +ME LIHHFKL+TEG +VP GE+Y+ VE PKGEF
Sbjct: 283 NAPEGKGPVVVEDNKVAPPRRGEMKRSMEALIHHFKLYTEGVHVPAGEVYAAVEAPKGEF 342
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLV+DG NKPY+ KIR+PGFAHLQ++ + GH+++DV I+G+ DIVFGE+DR
Sbjct: 343 GVYLVADGTNKPYKCKIRAPGFAHLQAMDHICRGHLLADVSAILGSLDIVFGEVDR 398
>gi|406606702|emb|CCH41926.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2 [Wickerhamomyces
ciferrii]
Length = 474
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 233/415 (56%), Positives = 301/415 (72%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ + +NFGPQHPAAHGVLRLILEL+GE + +ADPHIGLLHRATEKL E +TYLQ+LPY
Sbjct: 87 KIRHFTVNFGPQHPAAHGVLRLILELQGEEIIRADPHIGLLHRATEKLIESKTYLQALPY 146
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE ++ +A EKLLN+++P+RA+YIR +F EITR+LNHLM + SH++D+G
Sbjct: 147 FDRLDYVSMMTNELSFAIATEKLLNVELPLRAKYIRTLFGEITRILNHLMSVLSHAMDVG 206
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY+RPGGV +DLPE
Sbjct: 207 ALTPFLWGFEEREKLMEFYERVSGARLHAAYFRPGGVSQDLPE----------------- 249
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E LLTDNRIWKQR +G+G+++ E A + G +G
Sbjct: 250 --------GLLDDIYMWATQFGDRIDETEELLTDNRIWKQRTIGVGILTAEDAQNYGCSG 301
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV +D+RK QPY+ Y+ + FDIP+G NGD YDRYLVR+ E RQS +II+QC
Sbjct: 302 VMLRGSGVPYDIRKAQPYDAYDRVEFDIPVGTNGDCYDRYLVRMAEFRQSLRIIEQCCND 361
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ G V + KI+ P R MK +ME LIHHF LFT+G+ VP GE Y +E PKGE G
Sbjct: 362 M--PPGAVKVEDYKISPPPRSLMKEDMEALIHHFLLFTKGYAVPQGEAYVPIEAPKGEMG 419
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG+ +PY+ KIR+PGFAHL + + G++++D V IIGT D+VFGE+DR
Sbjct: 420 VYLVSDGSERPYKCKIRAPGFAHLAAFDHVARGNLLADAVAIIGTMDLVFGEVDR 474
>gi|393213123|gb|EJC98620.1| NADH dehydrogenase I, D subunit [Fomitiporia mediterranea MF3/22]
Length = 477
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 230/415 (55%), Positives = 298/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++ + +NFGPQHPAAHGVLRLILEL GE + +ADPHIGLLHR TEKL E +TY Q+LPY
Sbjct: 90 QMRHFTVNFGPQHPAAHGVLRLILELNGEEILRADPHIGLLHRGTEKLIEFKTYTQALPY 149
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE Y +A+EKLLNI++P RA++IR +F EITR+LNHLM + +H++D+G
Sbjct: 150 FDRLDYVSMMTNELCYSLAVEKLLNIEVPERAKWIRTLFGEITRILNHLMAVLTHAMDVG 209
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV DLP
Sbjct: 210 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVAFDLPH----------------- 252
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LL+ I + +F +DE E ++T NRIWKQR VGIG V+ + A+ F+G
Sbjct: 253 --------GLLNDIFQWATQFSSRVDEIEEVVTGNRIWKQRTVGIGTVTAKEAMDYSFSG 304
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGVKWDLRK PY+ Y+ + FDIP+GKNGD YDRYL R++E R+S +II QC+
Sbjct: 305 VMLRGSGVKWDLRKVAPYDKYDEVEFDIPVGKNGDCYDRYLCRVQEFRESLRIIDQCLNK 364
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + G + +++K+ P R +MK +ME LIHHFKLF+EG+ VP GE YS +E PKGE G
Sbjct: 365 MPT--GAIKVDDHKLVPPPRASMKESMESLIHHFKLFSEGYSVPPGETYSAIEAPKGEMG 422
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG+N+PYR KIR+PGFAHL ++ HM++D V IIGT D+VFGE+DR
Sbjct: 423 VYLVSDGSNRPYRCKIRAPGFAHLGGSDFIMRHHMLADAVAIIGTMDLVFGEVDR 477
>gi|149202671|ref|ZP_01879643.1| NADH dehydrogenase delta subunit [Roseovarius sp. TM1035]
gi|149143953|gb|EDM31987.1| NADH dehydrogenase delta subunit [Roseovarius sp. TM1035]
Length = 406
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 232/416 (55%), Positives = 302/416 (72%), Gaps = 26/416 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 16 KIRNFNINFGPQHPAAHGVLRLVLELDGELVERCDPHIGLLHRGTEKLMESRTYLQNLPY 75
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +AIEKL +++P RA IRV++ EI R+LNHL+ + + ++D+G
Sbjct: 76 FDRLDYVAPMNQEHAWCLAIEKLTGVEVPRRASLIRVLYCEIGRVLNHLLNVTTQAMDVG 135
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE GAR+HAAY+RPGGV++DLP
Sbjct: 136 ALTPPLWGFEEREKLMVFYERACGARLHAAYFRPGGVHQDLPP----------------- 178
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+L+D IE + N FP+ +D+ + LLT+NRI+KQR IG++S + AL GF+G
Sbjct: 179 --------ALIDDIETWANEFPRVLDDIDGLLTENRIFKQRNADIGIISQQEALDWGFSG 230
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG+ WDLR+ QPYE Y+ +F IP+GKNGD YDRYL R+EEMRQS +II Q I
Sbjct: 231 VMVRGSGMAWDLRRAQPYECYDEFDFLIPVGKNGDCYDRYLCRMEEMRQSLRIIHQAIAK 290
Query: 579 LRSNKGPV-ISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
LR+ +G I KIT PAR MK +ME LIHHFKL+TEGF VP GE+Y+ VE PKGEF
Sbjct: 291 LRAPEGQGDILARGKITPPARAEMKRSMEALIHHFKLYTEGFRVPEGEVYAAVEAPKGEF 350
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLV+DG N+PYR K+R+PGF HLQ++ + GH ++DV IIGT D+VFGEIDR
Sbjct: 351 GVYLVADGTNRPYRAKLRAPGFLHLQAMDHVAKGHQLADVAAIIGTMDVVFGEIDR 406
>gi|222148277|ref|YP_002549234.1| NADH dehydrogenase subunit D [Agrobacterium vitis S4]
gi|221735265|gb|ACM36228.1| NADH ubiquinone oxidoreductase chain D [Agrobacterium vitis S4]
Length = 396
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 229/416 (55%), Positives = 303/416 (72%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGP+HP+AHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 6 VRNFTINFGPEHPSAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIEAKTYLQALPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHAY +A+EKLL ++IPIR Q IRV++ EI R+L+H+M + + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAYCLAVEKLLGLEIPIRGQLIRVLYSEIGRILSHIMNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M ++ F ERE L+ YE SGARMHAAY+RPGG+++D+P
Sbjct: 126 MTPPVWGFEEREKLMVFYERASGARMHAAYFRPGGIHQDIP------------------- 166
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L++ I + + F K +D+ E LLT+NRI+KQR V IGVVS E A GF+G
Sbjct: 167 ------AQLVEDIGAWCDPFLKVLDDIEGLLTENRIFKQRNVDIGVVSLEDAWKWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLR+ QPYE Y+ + FDIP+GKNGD YDRYL+R+ EMR+S KI+KQC+ L
Sbjct: 221 MVRGSGAAWDLRRSQPYECYSDMEFDIPVGKNGDCYDRYLIRMMEMRESVKIMKQCVNRL 280
Query: 580 RSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+ GPV S + K+ P R MK +ME LIHHFKL+TEGF+VP GE+Y+ VE PKGEF
Sbjct: 281 LGDARIGPVSSVDGKVVPPKRGEMKRSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLV+DG NKPYR KIR+PGF HLQ++ M GH ++DV ++G+ DIVFGE+DR
Sbjct: 341 GVYLVADGTNKPYRCKIRAPGFVHLQAMDFMSRGHQLADVTAVLGSLDIVFGEVDR 396
>gi|103486794|ref|YP_616355.1| NADH dehydrogenase subunit D [Sphingopyxis alaskensis RB2256]
gi|98976871|gb|ABF53022.1| NADH dehydrogenase I, D subunit [Sphingopyxis alaskensis RB2256]
Length = 418
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 226/414 (54%), Positives = 296/414 (71%), Gaps = 26/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+ +Y +NFGPQHPAAHGVLR+++EL+GE++ + DPH+GLLHR TEKL E +TYLQ+LPY
Sbjct: 31 VTNYTINFGPQHPAAHGVLRMVMELDGEIIERVDPHVGLLHRGTEKLIEYKTYLQALPYF 90
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDY S + EH+YV+AIEKLL++++P RAQY+R MF E+TR+ NH++ IGSH +D+GA
Sbjct: 91 DRLDYCSPLGMEHSYVLAIEKLLDLEVPARAQYLRTMFAELTRICNHMLNIGSHVMDVGA 150
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M L+ F RED L+ +E SGARMH+AY+RPGGV++D+PE +
Sbjct: 151 MTPNLWVFELREDCLNFFERASGARMHSAYFRPGGVHQDVPEKL---------------- 194
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D E R PK + +L+ DNRI+KQR V I VS E AL+ GF+GP
Sbjct: 195 --------LVDIGEWVETRLPKLFGDAMSLVIDNRIFKQRNVDIATVSKEDALAWGFSGP 246
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG+ WDLRK QPY+ Y + FDIP+G GD YDR++VR+EE+ QS KIIKQC++ +
Sbjct: 247 MIRGSGIAWDLRKSQPYDAYAAMEFDIPVGTRGDCYDRFMVRVEEVYQSAKIIKQCLRDM 306
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ GP+ S + K+ P R MK +ME LIHHFKL+TEGF+VP GE+Y E PKGEFG+
Sbjct: 307 PT--GPIASLDRKVVPPKRGEMKQSMESLIHHFKLYTEGFHVPAGEVYVATESPKGEFGV 364
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG NKPYR KIR F+HLQ++ M GHM++D IIG D+VFGE DR
Sbjct: 365 YLVSDGTNKPYRCKIRPTAFSHLQAMDMMSKGHMLADTTAIIGAIDVVFGECDR 418
>gi|85717027|ref|ZP_01047989.1| NADH dehydrogenase delta subunit [Nitrobacter sp. Nb-311A]
gi|85696151|gb|EAQ34047.1| NADH dehydrogenase delta subunit [Nitrobacter sp. Nb-311A]
Length = 402
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 234/416 (56%), Positives = 308/416 (74%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL EQ+TYLQ++PY
Sbjct: 12 MRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEQKTYLQAIPYF 71
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +A E+LL I +P R Q IRV++ EI R+L+HL+ + + ++D+GA
Sbjct: 72 DRLDYVAPMNQEHAFCLAAERLLGIAVPRRGQLIRVLYCEIGRILSHLLNVTTQAMDVGA 131
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHAAY+R GGV++DLP K+
Sbjct: 132 LTPPLWGFEEREKLMMFYERASGSRMHAAYFRIGGVHQDLP----------------PKL 175
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
+N+ IE + + F + + + + LLT NRI+KQR V IGVV+ ++A GF+G
Sbjct: 176 IND---------IEAWCDPFLQVVADLDRLLTANRIFKQRNVDIGVVTLKQAWEWGFSGV 226
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLRK QPYE Y ++FDIPIGKNGD YDRYL+R+EEMRQS +I+KQCI L
Sbjct: 227 MVRGSGAAWDLRKAQPYECYAEMDFDIPIGKNGDCYDRYLIRMEEMRQSVRIMKQCIAKL 286
Query: 580 RS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
R+ +GPV +NKI P R MK +ME LIHHFKL+TEGF+VP GEIY+ VE PKGEF
Sbjct: 287 RAPDGQGPVAVEDNKIFPPRRSEMKRSMEALIHHFKLYTEGFHVPAGEIYAAVEAPKGEF 346
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG+NKPY+ KIR+PGFAHLQ++ + GH+++DV I+G+ DIVFGE+DR
Sbjct: 347 GVYLVSDGSNKPYKCKIRAPGFAHLQAMDFLCRGHLLADVSAILGSLDIVFGEVDR 402
>gi|218534472|sp|Q1GTK0.2|NUOD_SPHAL RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
Length = 405
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 226/414 (54%), Positives = 296/414 (71%), Gaps = 26/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+ +Y +NFGPQHPAAHGVLR+++EL+GE++ + DPH+GLLHR TEKL E +TYLQ+LPY
Sbjct: 18 VTNYTINFGPQHPAAHGVLRMVMELDGEIIERVDPHVGLLHRGTEKLIEYKTYLQALPYF 77
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDY S + EH+YV+AIEKLL++++P RAQY+R MF E+TR+ NH++ IGSH +D+GA
Sbjct: 78 DRLDYCSPLGMEHSYVLAIEKLLDLEVPARAQYLRTMFAELTRICNHMLNIGSHVMDVGA 137
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M L+ F RED L+ +E SGARMH+AY+RPGGV++D+PE +
Sbjct: 138 MTPNLWVFELREDCLNFFERASGARMHSAYFRPGGVHQDVPEKL---------------- 181
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D E R PK + +L+ DNRI+KQR V I VS E AL+ GF+GP
Sbjct: 182 --------LVDIGEWVETRLPKLFGDAMSLVIDNRIFKQRNVDIATVSKEDALAWGFSGP 233
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG+ WDLRK QPY+ Y + FDIP+G GD YDR++VR+EE+ QS KIIKQC++ +
Sbjct: 234 MIRGSGIAWDLRKSQPYDAYAAMEFDIPVGTRGDCYDRFMVRVEEVYQSAKIIKQCLRDM 293
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ GP+ S + K+ P R MK +ME LIHHFKL+TEGF+VP GE+Y E PKGEFG+
Sbjct: 294 PT--GPIASLDRKVVPPKRGEMKQSMESLIHHFKLYTEGFHVPAGEVYVATESPKGEFGV 351
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG NKPYR KIR F+HLQ++ M GHM++D IIG D+VFGE DR
Sbjct: 352 YLVSDGTNKPYRCKIRPTAFSHLQAMDMMSKGHMLADTTAIIGAIDVVFGECDR 405
>gi|427411291|ref|ZP_18901493.1| NADH-quinone oxidoreductase subunit D [Sphingobium yanoikuyae ATCC
51230]
gi|425710476|gb|EKU73498.1| NADH-quinone oxidoreductase subunit D [Sphingobium yanoikuyae ATCC
51230]
Length = 411
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 221/415 (53%), Positives = 302/415 (72%), Gaps = 26/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRL++EL+GE+V + DPH+GLLHR TEKL E +TY+Q+LPY
Sbjct: 23 EIQNYTINFGPQHPAAHGVLRLVMELDGEIVERCDPHVGLLHRGTEKLIEHKTYMQALPY 82
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDY S + EH+YV+A+EKLLN+++P+RAQY+RV F E+TR+ NH++ +GSH +D+G
Sbjct: 83 FDRLDYCSPLGMEHSYVLAVEKLLNLEVPLRAQYLRVFFAELTRICNHMLNLGSHVMDVG 142
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM L+ F RED L+ +E SGARMH+AY+RPGGV++D+P +
Sbjct: 143 AMTPNLWLFEIREDCLNFFERASGARMHSAYFRPGGVHQDVPLKL--------------- 187
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L D + R P+ ++ +L+ DNRI+KQR V I +VS E AL GF+G
Sbjct: 188 ---------LTDIADWLDTRLPRLFEDAMSLVVDNRIFKQRNVDISIVSKEDALKWGFSG 238
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WD+RK QPY++Y+ + FD+P+G D YDR++VR+EE+RQS +I+KQC+
Sbjct: 239 PMLRGSGIAWDIRKAQPYDVYDRMEFDVPVGTAFDCYDRFMVRVEEVRQSARIMKQCLSE 298
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ +GP+ S + K++ P R MK +ME LIHHFKL+TEGF+VP GE+Y E PKGEFG
Sbjct: 299 M--PEGPIASFDRKVSPPKRGEMKKSMEALIHHFKLYTEGFHVPAGEVYVATESPKGEFG 356
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG+NKPYR KIR F+HLQ++ M+ GHM++D ++G DIVFGE DR
Sbjct: 357 VYLVSDGSNKPYRCKIRPTAFSHLQAMDFMMKGHMLADTTAVLGAMDIVFGECDR 411
>gi|49475655|ref|YP_033696.1| NADH dehydrogenase subunit D [Bartonella henselae str. Houston-1]
gi|81696157|sp|Q6G391.1|NUOD_BARHE RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|49238462|emb|CAF27690.1| NADH dehydrogenase I, D subunit [Bartonella henselae str.
Houston-1]
Length = 396
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 230/418 (55%), Positives = 304/418 (72%), Gaps = 27/418 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
+ ++++ +NFGPQHPAAHGVLR++LEL+GEVV + DPHIGLLHR TEKL E +TYLQ+ P
Sbjct: 4 VNVRNFNINFGPQHPAAHGVLRMVLELDGEVVERVDPHIGLLHRGTEKLMETKTYLQAGP 63
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y+DRLDYV+ M EHA+V+AIEKLL +++P R Q IRV+F EI R+LNHL+ + + ++D+
Sbjct: 64 YLDRLDYVAPMNQEHAFVLAIEKLLGVEVPKRGQLIRVLFSEIGRILNHLLNVTTQAMDV 123
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GA+ L+ F +RE L+ YE GAR+HA Y+RPGGV++DLPE
Sbjct: 124 GALTPPLWGFEQRERLMIFYERACGARLHANYFRPGGVHQDLPE---------------- 167
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
SL++ I +F + F + + + L+T NRI+KQR V IGVVS + A + GF+
Sbjct: 168 ---------SLVEDIGNFIDPFLIALGKLDALITPNRIFKQRNVDIGVVSIDEAWARGFS 218
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
G M+RG+GV WDLRK QPYE Y+ + FDIP+GKN D YDRYL+R+EEMRQS KI++QC+
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYDEMEFDIPVGKNSDCYDRYLIRMEEMRQSAKIMRQCVD 278
Query: 578 WLRSNKG--PVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
L S + PV S + KI P R MKS+ME LIHHFKL+TEGF P GE+Y VE PKG
Sbjct: 279 RLLSTEKNEPVSSLDRKIVPPKRCEMKSSMEALIHHFKLYTEGFRTPPGEVYVAVEAPKG 338
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFG+YLVSDG NKPYR+K+R+PGFAHLQ++ + GHM++D I+G+ DIVFGE+DR
Sbjct: 339 EFGVYLVSDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAILGSIDIVFGEVDR 396
>gi|182676964|ref|YP_001831111.1| NADH dehydrogenase I, D subunit [Beijerinckia indica subsp. indica
ATCC 9039]
gi|218534365|sp|B2ILG7.1|NUOD2_BEII9 RecName: Full=NADH-quinone oxidoreductase subunit D 2; AltName:
Full=NADH dehydrogenase I subunit D 2; AltName:
Full=NDH-1 subunit D 2
gi|182636594|gb|ACB97367.1| NADH dehydrogenase I, D subunit [Beijerinckia indica subsp. indica
ATCC 9039]
Length = 396
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 240/415 (57%), Positives = 302/415 (72%), Gaps = 27/415 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
+++ +NFGPQHPAAHGVLRL+LEL+GEVV +ADPHIGLLHR TEKL E RTYLQ+LPY D
Sbjct: 7 RNFTVNFGPQHPAAHGVLRLVLELDGEVVERADPHIGLLHRGTEKLIEYRTYLQALPYFD 66
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYV+ M EHA+ +AIEKLL + +P R Q IRV+F EI RLL+HL+ I + +LDIGA+
Sbjct: 67 RLDYVAPMNQEHAFCLAIEKLLQMPVPRRGQLIRVLFCEIGRLLSHLLNITTQALDIGAL 126
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
L+ F ERE L+ YE SGARMHA Y+R GGV++DLPE
Sbjct: 127 TPPLWGFEEREKLMVFYERASGARMHANYFRVGGVHQDLPE------------------- 167
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
LLD I +F F K ++ E LL+ NRI+KQR V +GV+S + A + GF+G M
Sbjct: 168 ------KLLDDIWNFCEPFLKVCNDLEELLSYNRIFKQRNVDVGVISLDEAWTRGFSGVM 221
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
+RGSG WDLRK QPYE Y+ L FDIP+GK+GD YDRYL+R+EEMRQS +I+KQC++ L
Sbjct: 222 VRGSGAAWDLRKAQPYECYDELQFDIPVGKHGDCYDRYLIRMEEMRQSVRIMKQCLEKLS 281
Query: 581 S--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
S KGP+I N+K+T P R MK +ME LI HFKL+TEG +VP GE+Y+ VE PKGEFG
Sbjct: 282 SVDGKGPIIEQNHKVTPPRRSEMKRSMEALIQHFKLYTEGHHVPAGEVYAAVEAPKGEFG 341
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YL+SDG+N PYR KIR+P FAHLQ++ + HM++DV IIG+ DIVFGEIDR
Sbjct: 342 VYLISDGSNIPYRCKIRAPSFAHLQAIDFLSHKHMLADVSAIIGSLDIVFGEIDR 396
>gi|329850726|ref|ZP_08265571.1| NADH-quinone oxidoreductase subunit D [Asticcacaulis biprosthecum
C19]
gi|328841041|gb|EGF90612.1| NADH-quinone oxidoreductase subunit D [Asticcacaulis biprosthecum
C19]
Length = 404
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 237/427 (55%), Positives = 303/427 (70%), Gaps = 31/427 (7%)
Query: 267 VGHPFRKDFPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKL 326
VGH D + + +NFGPQHPAAHGVLRL+L+L+GE+V + DPHIGLLHR TEKL
Sbjct: 9 VGHKGEDD------RKFTINFGPQHPAAHGVLRLVLDLDGEIVERVDPHIGLLHRGTEKL 62
Query: 327 AEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNH 386
E RTYLQ++PY DRLDYV+ M EHA+ +AIEKLL + +P RAQYIRV+F EI R+L+H
Sbjct: 63 MESRTYLQNIPYFDRLDYVAPMNQEHAFCLAIEKLLGLDVPKRAQYIRVIFSEIGRILSH 122
Query: 387 LMWIGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQY 446
L+ + + ++D+GA+ L+ F ERE L+ YE GAR+HA Y+RPGGV++DLP P+
Sbjct: 123 LLNVTTQAMDVGALTPPLWGFEEREKLMVFYERACGARLHANYFRPGGVHQDLP---PEL 179
Query: 447 KSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVV 506
II + FPK + + ETL+T+NRI+KQR V IGVV
Sbjct: 180 IEDIIA----------------------WCKYFPKPLADIETLVTENRIFKQRNVDIGVV 217
Query: 507 SPERALSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMR 566
S E+A GFTG ++RGS V WDLRK QPYE Y L FDI +GKNGD +DRYL RIEEM+
Sbjct: 218 SKEQAFDWGFTGVLIRGSNVAWDLRKSQPYECYAELEFDIVLGKNGDCWDRYLCRIEEMK 277
Query: 567 QSNKIIKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEI 626
QS KI+ QC+ L+ G V+S ++K+T P R MK++ME LIHHFKL+TEGF P GE+
Sbjct: 278 QSVKIMLQCLDKLKQTPGEVLSRDHKVTPPRRAEMKNSMEALIHHFKLYTEGFKTPEGEV 337
Query: 627 YSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDI 686
Y+ VE PKGEFG+YLVSDG NKPYR KIR+PGF HLQ++ + GH+++DV I+G+ DI
Sbjct: 338 YAAVEAPKGEFGVYLVSDGTNKPYRCKIRAPGFPHLQAMDWLNRGHLLADVSAILGSLDI 397
Query: 687 VFGEIDR 693
VFGEIDR
Sbjct: 398 VFGEIDR 404
>gi|402819267|ref|ZP_10868836.1| nuoD1 protein [alpha proteobacterium IMCC14465]
gi|402511971|gb|EJW22231.1| nuoD1 protein [alpha proteobacterium IMCC14465]
Length = 392
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 233/415 (56%), Positives = 302/415 (72%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
E + + +NFGPQHPAAHGVLRL+++L+GE+V + DPHIGLLHR TEKL E +TYLQS+PY
Sbjct: 5 EDRKFTINFGPQHPAAHGVLRLVMDLDGEIVERIDPHIGLLHRGTEKLIEHKTYLQSVPY 64
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +A+E +L + +P R QYIRV++ EI R+L+HL+ I + ++D+G
Sbjct: 65 FDRLDYVAPMNQEHAFALAVESMLGVTVPARGQYIRVLYSEIGRILSHLLNITTQAMDVG 124
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE SGAR+HAAY+RPGGV++DLP+
Sbjct: 125 ALTPPLWGFEEREKLMIFYERASGARLHAAYFRPGGVHQDLPQ----------------- 167
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I F + F K +D+ E+LLT+NRI+KQR V IGVVS + G TG
Sbjct: 168 --------DLLDDIYAFCDPFLKVMDDIESLLTENRIFKQRNVDIGVVSHHDINNWGLTG 219
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M RGSG+ WDLRK QPYEIY+ L+FDIP+GKNGD YDRYL R+EE RQS +I+KQC++
Sbjct: 220 VMARGSGLAWDLRKAQPYEIYSDLDFDIPVGKNGDCYDRYLCRVEECRQSVRIMKQCLEQ 279
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ GPV S + KI P R MK +ME LIHHFKL+TEG++VP GEIY VE PKGEFG
Sbjct: 280 M--PDGPVSSKDGKIVPPKRGEMKGSMEALIHHFKLYTEGYHVPAGEIYRAVEAPKGEFG 337
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLV+DG+NKPYR KIR+PG+AHLQ+L + HM++DV I+G+ DIVFGE+DR
Sbjct: 338 VYLVADGSNKPYRCKIRAPGYAHLQALDYLSRDHMLADVSAILGSLDIVFGEVDR 392
>gi|381200919|ref|ZP_09908051.1| NADH dehydrogenase subunit D [Sphingobium yanoikuyae XLDN2-5]
Length = 411
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 221/415 (53%), Positives = 302/415 (72%), Gaps = 26/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRL++EL+GE+V + DPH+GLLHR TEKL E +TY+Q+LPY
Sbjct: 23 EIQNYTINFGPQHPAAHGVLRLVMELDGEIVERCDPHVGLLHRGTEKLIEHKTYMQALPY 82
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDY S + EH+YV+A+EKLLN+++P+RAQY+RV F E+TR+ NH++ +GSH +D+G
Sbjct: 83 FDRLDYCSPLGMEHSYVLAVEKLLNLEVPLRAQYLRVFFAELTRICNHMLNLGSHVMDVG 142
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM L+ F RED L+ +E SGARMH+AY+RPGGV++D+P +
Sbjct: 143 AMTPNLWLFEIREDCLNFFERASGARMHSAYFRPGGVHQDVPLKL--------------- 187
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L D + R P+ ++ +L+ DNRI+KQR V I +VS E AL GF+G
Sbjct: 188 ---------LTDIADWLDTRLPRLFEDAMSLVVDNRIFKQRNVDISIVSKEDALKWGFSG 238
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WD+RK QPY++Y+ + FD+P+G D YDR++VR+EE+RQS +I+KQC+
Sbjct: 239 PMLRGSGIAWDIRKAQPYDVYDRMEFDVPVGTAFDCYDRFMVRVEEVRQSARIMKQCLNE 298
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ +GP+ S + K++ P R MK +ME LIHHFKL+TEGF+VP GE+Y E PKGEFG
Sbjct: 299 M--PEGPIASFDRKVSPPKRGEMKKSMEALIHHFKLYTEGFHVPAGEVYVATESPKGEFG 356
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG+NKPYR KIR F+HLQ++ M+ GHM++D ++G DIVFGE DR
Sbjct: 357 VYLVSDGSNKPYRCKIRPTAFSHLQAMDFMMKGHMLADTTAVLGAMDIVFGECDR 411
>gi|254780855|ref|YP_003065268.1| NADH dehydrogenase subunit D [Candidatus Liberibacter asiaticus
str. psy62]
gi|254040532|gb|ACT57328.1| NADH dehydrogenase subunit D [Candidatus Liberibacter asiaticus
str. psy62]
Length = 396
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 232/415 (55%), Positives = 305/415 (73%), Gaps = 27/415 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
+S+ +NFGPQHPAAHGVLRLILEL+GE+V + DPHIGLLHR TEKL E +T+LQ++PY D
Sbjct: 7 RSFTINFGPQHPAAHGVLRLILELDGEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFD 66
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYV+ M EHAY +A+EKLL I+IPIR Q IRV++ EI R+L+HL+ + + ++D+GA+
Sbjct: 67 RLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGAL 126
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
L+ F ERE L+ YE SG+RMHAAY+RPGGV++D+P
Sbjct: 127 TPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDIPP------------------- 167
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
L++ I + + FP +++ LLT NRI+KQR V IG V E A GF+G M
Sbjct: 168 ------ELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFSGVM 221
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCI-KWL 579
+RGSG WDLRK QPYE Y+ L+FDIPIGK+GD YDRYLVR+ EMR+S KII+QC+ + L
Sbjct: 222 IRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVNRLL 281
Query: 580 RSNK-GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
NK GPV +++ KI P R +MK +ME LIHHFKL+TEG++VP+GE+Y+ VE PKGEFG
Sbjct: 282 GKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKGEFG 341
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YL+SDG NKPYR KIR+PG+AHLQ++ + GH ++DV I+G+ DIVFGE+DR
Sbjct: 342 VYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAILGSLDIVFGEVDR 396
>gi|395766610|ref|ZP_10447149.1| NADH-quinone oxidoreductase subunit D [Bartonella doshiae NCTC
12862]
gi|395415734|gb|EJF82161.1| NADH-quinone oxidoreductase subunit D [Bartonella doshiae NCTC
12862]
Length = 396
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 230/418 (55%), Positives = 305/418 (72%), Gaps = 27/418 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
+ ++++ +NFGPQHPAAHGVLR++LEL+GEVV + DPHIGLLHR TEKL E +TYLQ+ P
Sbjct: 4 VNVRNFNINFGPQHPAAHGVLRMVLELDGEVVERVDPHIGLLHRGTEKLMETKTYLQAGP 63
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y+DRLDYV+ M EHA+V+AIEKLL +++P R Q IRV+F EI R+LNHL+ + + ++D+
Sbjct: 64 YLDRLDYVAPMNQEHAFVLAIEKLLGVEVPKRGQLIRVLFSEIGRILNHLLNVTTQAMDV 123
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GA+ L+ F +RE L+ YE GAR+HA Y+RPGGV++DLPE
Sbjct: 124 GALTPPLWGFEQRERLMIFYERACGARLHANYFRPGGVHQDLPE---------------- 167
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
SL++ I +F + F + + + L+T NRI+KQR V IGVVS + A + GF+
Sbjct: 168 ---------SLIEDIGNFIDPFLVALGKLDALVTPNRIFKQRNVDIGVVSIDEAWARGFS 218
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
G M+RG+GV WDLRK Q YE Y+ + FDIP+GKN D YDRYL+R+EEMRQS KI++QC+
Sbjct: 219 GVMIRGAGVPWDLRKSQSYECYDEMEFDIPVGKNSDCYDRYLIRMEEMRQSAKIMRQCVD 278
Query: 578 WLRSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
L S + GPV S + KI P R MKS+ME LIHHFKL+TEGF+ P GE+Y VE PKG
Sbjct: 279 RLLSTEKNGPVSSLDRKIVPPKRGEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFG+YLVSDG NKPYR+K+R+PGFAHLQ++ + GHM++D I+G+ DIVFGE+DR
Sbjct: 339 EFGVYLVSDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAILGSIDIVFGEVDR 396
>gi|46105501|ref|XP_380552.1| NUCM_NEUCR NADH-ubiquinone oxidoreductase 49 kDa subunit,
mitochondrial precursor (Complex I-49KD) (CI-49KD)
[Gibberella zeae PH-1]
gi|408400680|gb|EKJ79757.1| hypothetical protein FPSE_00037 [Fusarium pseudograminearum CS3096]
Length = 468
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 229/415 (55%), Positives = 297/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E +TYLQ+LPY
Sbjct: 81 KVRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYLQALPY 140
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLN++IP RA++IR +F EITR+LNHLM + SH++D+G
Sbjct: 141 FDRLDYVSMMTNEQCFSLAVEKLLNVEIPERAKWIRTLFGEITRILNHLMSVLSHAMDVG 200
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV++D+P
Sbjct: 201 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPV----------------- 243
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E +LTDNRIW +RL G+GVV AL++ FTG
Sbjct: 244 --------GLLDDIYQWATQFGDRIDETEEMLTDNRIWIERLRGVGVVPAAEALNLSFTG 295
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV +D+RK QPY+ Y+ + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 296 VMLRGSGVPFDVRKNQPYDAYDQVEFDVPVGTNGDCYDRYLCRMEEFRQSLRIIHQCLNK 355
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + K++ P R MK NME LIHHF L+T+G+ VP GE YS +E PKGE G
Sbjct: 356 MPA--GPVRVEDYKVSPPPRAAMKENMEALIHHFLLYTKGYAVPPGETYSAIEAPKGEMG 413
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDG+ +PYR IR+PGFAHL + GH+++D V +IGT D+VFGE+DR
Sbjct: 414 VYVVSDGSERPYRCHIRAPGFAHLGGFDHVSKGHLLADAVAVIGTMDLVFGEVDR 468
>gi|284106848|ref|ZP_06386291.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Candidatus
Poribacteria sp. WGA-A3]
gi|283830027|gb|EFC34303.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Candidatus
Poribacteria sp. WGA-A3]
Length = 583
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 250/595 (42%), Positives = 348/595 (58%), Gaps = 86/595 (14%)
Query: 145 TAEALLYDYYSTMKILRDHVNFRFEQLIDLCGIDYSIYNKNINSDNSNKNLRFAIVLHLL 204
+A+ D + L D F+ L D+C DY + RF ++ H L
Sbjct: 29 SAQVRAQDLVEVARFLHDDPGMAFDHLTDICSADYP-----------DDLERFEVIYHFL 77
Query: 205 SLNYNWRLRVRVFAENNELPRLHSITSLWSSANWYEREAFDLFGIFFDGHDDLRRLLTDY 264
SL +N R+R++ E P L ++TS+W AN+ ERE +DL GI F+GH DLRR+L
Sbjct: 78 SLPHNTRIRLKTRV-TEEQPTLGTVTSIWKGANFLEREVYDLMGITFEGHPDLRRILLPE 136
Query: 265 GFV-GHPFRKDFPVIEIKSYK--------------------------------------- 284
+ GHP RKDFP E K ++
Sbjct: 137 DYEEGHPLRKDFPT-EGKGWRSTFDFIPRLDEPESEWTEREIPQDQRHMFLAGDAPESAK 195
Query: 285 ------LNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
LN GPQHP+ HGVLR++LEL+GE V KA P +G LHR EKLAE Y+Q +P+
Sbjct: 196 RTTELLLNMGPQHPSTHGVLRVVLELDGERVAKAVPDMGYLHRGVEKLAEGLHYMQVIPH 255
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV M N +AYV A+EKL+ + IP RA+Y+R + E+ R++ HL W+G+ +LDIG
Sbjct: 256 TDRLDYVCAMTNNYAYVRAVEKLVGVTIPERAEYVRTIVAEVQRIVGHLFWLGTQALDIG 315
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V + FRERE LLD +E + GAR+ YYR GGV DL
Sbjct: 316 AMTVFFWTFREREVLLDFFEQLCGARLTLNYYRIGGVDGDL------------------- 356
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+L++ + F FP+++ EY+TLL NRIW R + V+S E A++ G TG
Sbjct: 357 ------TPALIERLRGFLKTFPEHVQEYDTLLQRNRIWVARTKNVAVISAEDAINFGLTG 410
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
P LRGSGV +D+RK +PY +Y+ + +D+P+GK GD+YDRY +R+EEM+QS +II+QC+
Sbjct: 411 PTLRGSGVAYDVRKLEPYGVYDRVEWDVPVGKGGDTYDRYWIRVEEMKQSARIIEQCLDQ 470
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L +GP++++ ++ PA+ N+ +ME LIHHF +FT+GF P GE Y E PKGE G
Sbjct: 471 L--PEGPIMADMPQVIPPAKPNVMRDMESLIHHFIIFTQGFKPPKGETYCGTEVPKGELG 528
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+L+SDG+ +PYR+KIRSP F H+ + M G++ISD++TI GT DIV GE DR
Sbjct: 529 FFLISDGSPRPYRMKIRSPSFVHMGAFDFMARGYLISDIITIFGTYDIVMGECDR 583
>gi|338981059|ref|ZP_08632295.1| NADH-quinone oxidoreductase subunit D [Acidiphilium sp. PM]
gi|338208025|gb|EGO95924.1| NADH-quinone oxidoreductase subunit D [Acidiphilium sp. PM]
Length = 406
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 230/418 (55%), Positives = 309/418 (73%), Gaps = 28/418 (6%)
Query: 277 VIEIKS-YKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQS 335
VI+I + +N GPQHPA HGVLRLILELEGE V +ADPHIGLLHR TEKL E ++YLQ+
Sbjct: 16 VIDINDRHTVNVGPQHPATHGVLRLILELEGETVTRADPHIGLLHRGTEKLIEYKSYLQA 75
Query: 336 LPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSL 395
+PY DRLDYVS MC EHA+ +A E+LL +K+P RAQ+IRV+F EITR+LNHL+ +L
Sbjct: 76 VPYFDRLDYVSPMCCEHAFALATERLLGVKVPERAQWIRVLFAEITRILNHLLNAVHLAL 135
Query: 396 DIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNK 455
DIGA L+ + ERE LL +EAVSGAR HA Y+RPGGV +D+P
Sbjct: 136 DIGAQSPSLWGYEEREKLLTFHEAVSGARFHANYFRPGGVSKDMPT-------------- 181
Query: 456 ATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMG 515
L + I +++ +FPK +D+ ++LL +NRI++QRLV IGV+S E AL+MG
Sbjct: 182 -----------GLAEQIWEWSEKFPKFLDDLQSLLNENRIFRQRLVDIGVISAEDALAMG 230
Query: 516 FTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQC 575
F+GP LR SG+ WDLR+ QPY+ Y+ ++FDIP+G++GDS+DRYLVRI EM +S KII+Q
Sbjct: 231 FSGPNLRASGIAWDLRRAQPYDKYDEVDFDIPVGRHGDSFDRYLVRIREMAESLKIIRQA 290
Query: 576 IKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
+K + +GP+ ++KIT P R MK +ME LIHHFKL+TEG++VP G Y+ VE PKG
Sbjct: 291 LKAM--PEGPIKVQDHKITPPKRAEMKRSMEALIHHFKLYTEGYHVPAGTTYTAVEAPKG 348
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFG+YLV+DG+N+PYR KIR+ GF+HLQ+++ M GH+++D + ++G+ DIVFGE+DR
Sbjct: 349 EFGVYLVADGSNRPYRCKIRATGFSHLQAMNLMSKGHLLADAIAVLGSIDIVFGEVDR 406
>gi|149914580|ref|ZP_01903110.1| NADH-quinone oxidoreductase chain D [Roseobacter sp. AzwK-3b]
gi|149811373|gb|EDM71208.1| NADH-quinone oxidoreductase chain D [Roseobacter sp. AzwK-3b]
Length = 405
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 233/417 (55%), Positives = 303/417 (72%), Gaps = 28/417 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ LNFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 15 KIRNFNLNFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNLPY 74
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +AIEKL +++P RA IRV++ EI R+LNHL+ + + ++D+G
Sbjct: 75 FDRLDYVAPMNQEHAWCLAIEKLTGVEVPRRASLIRVLYSEIGRILNHLLNVTTQAMDVG 134
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE GAR+HAAY+RPGGV++DLP
Sbjct: 135 ALTPPLWGFEEREKLMVFYERACGARLHAAYFRPGGVHQDLPT----------------- 177
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L+D IE + + FP+ + + + LLT+NRI+KQR IGVV+ + L GF+G
Sbjct: 178 --------ELIDDIETWAHEFPRVLADIDGLLTENRIFKQRNADIGVVTEKDILDWGFSG 229
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG+ WDLR+ QPYE Y+ +F IP+GKNGD YDRYLVR+EEMRQS II QCI
Sbjct: 230 VMVRGSGLAWDLRRAQPYECYDEFDFQIPVGKNGDCYDRYLVRMEEMRQSLSIIHQCIAK 289
Query: 579 LRS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
LR+ +G V++ KIT P+R MK++ME LIHHFKL+TEGF VP GE+Y+ VE PKGE
Sbjct: 290 LRAPDGQGDVLA-RGKITPPSRGEMKTSMEALIHHFKLYTEGFRVPEGEVYAAVEAPKGE 348
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YLV+DG NKPYR K+R+PGF HLQ++ + GH ++DV IIGT D+VFGEIDR
Sbjct: 349 FGVYLVADGTNKPYRAKLRAPGFLHLQAMDYVAGGHQLADVAAIIGTMDVVFGEIDR 405
>gi|421587052|ref|ZP_16032507.1| NADH dehydrogenase subunit D [Rhizobium sp. Pop5]
gi|403708573|gb|EJZ23228.1| NADH dehydrogenase subunit D [Rhizobium sp. Pop5]
Length = 396
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 231/416 (55%), Positives = 305/416 (73%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 6 VRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHAY +A+EKLL I+IPIR Q IRV++ EI R+L+HL+ + + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAYALAVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHAAY+RPGGV++DLPE
Sbjct: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDLPE------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+ I + + F K +D+ + LLT NRI+KQR V IGVVS E + GF+G
Sbjct: 168 -------KLVQDIGGWCDPFLKALDDIDDLLTGNRIFKQRNVDIGVVSLEDCWAWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLR+ QPYE Y+ L FDIPIGKNGD+YDRYL+R+ EMR+S +I+KQC+ L
Sbjct: 221 MVRGSGAAWDLRRAQPYECYSDLEFDIPIGKNGDNYDRYLIRMIEMRESVRIMKQCVNRL 280
Query: 580 RSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
S+ GP S + K+ P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGEF
Sbjct: 281 LSDAKTGPFSSIDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG+NKPYR KIR+PG+AHLQ++ M GH ++D+ ++G+ DIVFGE+DR
Sbjct: 341 GVYLVSDGSNKPYRCKIRAPGYAHLQAMDFMCRGHQLADIAAVLGSLDIVFGEVDR 396
>gi|347842399|emb|CCD56971.1| similar to NADH-ubiquinone oxidoreductase 49 kDa subunit
[Botryotinia fuckeliana]
Length = 473
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 231/415 (55%), Positives = 299/415 (72%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILEL GE + ++DPH+GLLHR TEKL E +TY+Q+LPY
Sbjct: 86 KIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRSDPHVGLLHRGTEKLIEYKTYIQALPY 145
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLN++IP RA++IR +F EITR+LNHLM + SH++D+G
Sbjct: 146 FDRLDYVSMMTNEQCFSLAVEKLLNVEIPERAKWIRTLFGEITRILNHLMSVLSHAMDVG 205
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV++D+P
Sbjct: 206 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPV----------------- 248
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E LLTDNRIW R G+GVVS AL++ FTG
Sbjct: 249 --------GLLDDIYQWATQFGDRIDETEELLTDNRIWIGRTKGVGVVSAADALNLSFTG 300
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV +D+RK QPY+ Y+ ++FD+P+G +GD YDRYL R+EE RQS +II QC+
Sbjct: 301 VMLRGSGVPFDVRKSQPYDAYDQVDFDVPVGVHGDCYDRYLCRMEEFRQSLRIIHQCLNK 360
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GP+ + KI+ P R MK NME LIHHF LFT+G+ VP GE YS +E PKGE G
Sbjct: 361 MPA--GPIRVEDYKISPPPRAAMKENMEALIHHFLLFTKGYTVPPGETYSAIEAPKGEMG 418
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDG+ +PYR KIR+PGFAHL ++ GH+++D V IIGT D+VFGE+DR
Sbjct: 419 VYVVSDGSERPYRCKIRAPGFAHLGGFDQISRGHLLADAVAIIGTMDLVFGEVDR 473
>gi|89067786|ref|ZP_01155240.1| NADH dehydrogenase delta subunit [Oceanicola granulosus HTCC2516]
gi|89046756|gb|EAR52811.1| NADH dehydrogenase delta subunit [Oceanicola granulosus HTCC2516]
Length = 404
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 226/415 (54%), Positives = 304/415 (73%), Gaps = 26/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 16 KIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMETRTYLQNLPY 75
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +AIEKL ++P RAQ IRV++ EI R+LNHL+ + + ++D+G
Sbjct: 76 FDRLDYVAPMNQEHAWCLAIEKLTGTEVPRRAQLIRVLYSEIGRVLNHLLNVTTQAMDVG 135
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE GAR+HAAY+RPGGV++DLP+
Sbjct: 136 ALTPPLWGFEEREKLMIFYERACGARLHAAYFRPGGVHQDLPD----------------- 178
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L++ I+ + FP+ +D+ + LLT+NRI+KQR V IG+V+ + L GF+G
Sbjct: 179 --------ELVEDIDAWAKTFPEVLDDIDGLLTENRIFKQRNVDIGIVNEQEILDWGFSG 230
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG+ WDLR+ QPYE Y+ F +P+GKNGD +DRYLVR+EEMRQS II+Q +
Sbjct: 231 VMVRGSGLAWDLRRAQPYECYDEFEFQVPVGKNGDCFDRYLVRMEEMRQSTHIIRQACEK 290
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR +G V++ K+T P+R +MK++ME LIHHFKL+TEGF+VP GE+Y VE PKGEFG
Sbjct: 291 LRRERGDVLA-RGKVTPPSRADMKTSMESLIHHFKLYTEGFHVPEGEVYCAVEAPKGEFG 349
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLV+DG N+PYR K+R+PGF HLQ++ + GH ++DV IIGT DIVFGE+DR
Sbjct: 350 VYLVADGTNRPYRAKLRAPGFLHLQAMDHISKGHQLADVSAIIGTLDIVFGEVDR 404
>gi|329114681|ref|ZP_08243440.1| NADH-quinone oxidoreductase subunit D [Acetobacter pomorum DM001]
gi|326696161|gb|EGE47843.1| NADH-quinone oxidoreductase subunit D [Acetobacter pomorum DM001]
Length = 426
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 233/417 (55%), Positives = 298/417 (71%), Gaps = 27/417 (6%)
Query: 277 VIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSL 336
++EI S+ LNFGPQHP+AHGVLRL+LE+EGEVV +A PHIGLLHR TEKL E +TY ++L
Sbjct: 37 IVEIDSHALNFGPQHPSAHGVLRLVLEMEGEVVARAVPHIGLLHRGTEKLIEYKTYQKAL 96
Query: 337 PYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLD 396
PY DRLDYVS MC E A+ +A EKLL I IP RA+++RVMF EITR+LNH++ + + LD
Sbjct: 97 PYFDRLDYVSPMCEEQAFALATEKLLGIDIPERAKWLRVMFAEITRVLNHILNLTAMGLD 156
Query: 397 IGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKA 456
GA+ L+ + ERE LL+ YEA SGAR HA Y+RPGGV RD+P
Sbjct: 157 CGAVTPALWGYEEREKLLEFYEAASGARFHANYFRPGGVARDVP---------------- 200
Query: 457 TKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGF 516
L D I + FPK IDE E LLT+NRIWKQR VGIGV + E+AL+ GF
Sbjct: 201 ---------AGLEDKIGAWAKEFPKWIDELEGLLTENRIWKQRTVGIGVFTTEQALAWGF 251
Query: 517 TGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCI 576
+GP LR SGV WDLR+ QPY+ Y+ + F++P+ + GD YDRYLVR+ EMR+S KII+QC+
Sbjct: 252 SGPCLRASGVPWDLRRNQPYDNYHKVEFNVPVARQGDCYDRYLVRVAEMRESVKIIEQCL 311
Query: 577 KWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
+R G V + K + P R MK +ME LIHHFKLF+EG++VP G Y+ VE PKGE
Sbjct: 312 SQMRP--GDVKVQDPKFSPPPRAEMKRSMEALIHHFKLFSEGYHVPPGATYTAVESPKGE 369
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YLV+DG+N+PYR KIR GFAHLQ++ E+ M++D+V IIG+ D+VFGE+DR
Sbjct: 370 FGVYLVADGSNRPYRCKIRPTGFAHLQAIDELSRRGMLADMVAIIGSLDLVFGEVDR 426
>gi|402827199|ref|ZP_10876302.1| NADH dehydrogenase subunit D [Sphingomonas sp. LH128]
gi|402259299|gb|EJU09559.1| NADH dehydrogenase subunit D [Sphingomonas sp. LH128]
Length = 403
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 222/414 (53%), Positives = 301/414 (72%), Gaps = 26/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
I +Y +NFGPQHPAAHGVLR+++EL+GE++ + DPH+GLLHR TEKL E +TYLQ+LPY
Sbjct: 16 ITNYTINFGPQHPAAHGVLRMVMELDGEIIERIDPHVGLLHRGTEKLIEHKTYLQALPYF 75
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDY S + EH+YV+AIEKLLN+++P+RAQY+RV+F E+TR+ NH+M +GSH +DIGA
Sbjct: 76 DRLDYCSPLGMEHSYVLAIEKLLNLEVPLRAQYLRVLFAELTRICNHMMNMGSHIMDIGA 135
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M L+ F RED L+ +E SGARMH+A++RPGGV++D+P +
Sbjct: 136 MTPNLWLFEIREDCLNFFERASGARMHSAWFRPGGVHQDVPLKL---------------- 179
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L D + R P+ ++ +L+ DNRI+KQR V I VS E AL+ GF+GP
Sbjct: 180 --------LTDIADWLDTRLPELFEDALSLVADNRIFKQRNVDIATVSKEDALAWGFSGP 231
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG+ WD+RK QPY++Y+ ++F++P+G +GD YDR++ R EE+RQS +I+KQC++ +
Sbjct: 232 MIRGSGIAWDIRKAQPYDVYDRMDFEVPVGTSGDCYDRFMCRAEEVRQSARIMKQCLREM 291
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+GPV S + K+ P R MKS+ME LIHHFKL+TEGF+VP GE+Y E PKGEFG+
Sbjct: 292 --PEGPVASTDRKVVPPKRAEMKSSMESLIHHFKLYTEGFHVPAGEVYVATESPKGEFGV 349
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+NKPYR KIR F+HLQ++ M GHM+ D I+G DIVFGE DR
Sbjct: 350 YLVSDGSNKPYRCKIRPTAFSHLQAMDFMSKGHMLPDATAILGAMDIVFGECDR 403
>gi|398386450|ref|ZP_10544451.1| NADH dehydrogenase I, D subunit [Sphingobium sp. AP49]
gi|397718233|gb|EJK78825.1| NADH dehydrogenase I, D subunit [Sphingobium sp. AP49]
Length = 411
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 221/415 (53%), Positives = 303/415 (73%), Gaps = 26/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRL++EL+GE+V + DPH+GLLHR TEKL E +TY+Q+LPY
Sbjct: 23 EIQNYTINFGPQHPAAHGVLRLVMELDGEIVERCDPHVGLLHRGTEKLIEYKTYMQALPY 82
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDY S + EH+YV+A+EKLLN+++P+RAQY+RV F E+TR+ NH++ +GSH +D+G
Sbjct: 83 FDRLDYCSPLGMEHSYVLAVEKLLNLEVPLRAQYLRVFFAELTRICNHMLNLGSHVMDVG 142
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM L+ F RED L+ +E SGARMH+AY+RPGGV++D+P +
Sbjct: 143 AMTPNLWLFEIREDCLNFFERASGARMHSAYFRPGGVHQDVPLKL--------------- 187
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L D + R P+ ++ +L+ DNRI+KQR V I +VS E AL GF+G
Sbjct: 188 ---------LTDIADWLDTRLPRLFEDAMSLVVDNRIFKQRNVDISIVSKEDALKWGFSG 238
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WD+RK QPY++Y+ ++FD+P+G D YDR++VR+EE+RQS +I+KQC+
Sbjct: 239 PMLRGSGIAWDIRKAQPYDVYDRMDFDVPVGTAYDCYDRFMVRVEEVRQSARIMKQCLSE 298
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ +GP+ S + K++ P R MK +ME LIHHFKL+TEGF+VP GE+Y E PKGEFG
Sbjct: 299 M--PEGPIASFDRKVSPPKRGEMKRDMEALIHHFKLYTEGFHVPAGEVYVATESPKGEFG 356
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG+NKPYR KIR F+HLQ++ M+ GHM++D ++G DIVFGE DR
Sbjct: 357 VYLVSDGSNKPYRCKIRPTAFSHLQAMDFMMKGHMLADTTAVLGAMDIVFGECDR 411
>gi|393725297|ref|ZP_10345224.1| NADH dehydrogenase subunit D [Sphingomonas sp. PAMC 26605]
Length = 411
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 219/416 (52%), Positives = 303/416 (72%), Gaps = 26/416 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
+EI++Y +NFGPQHPAAHGVLRL++EL+GE+V + DPH+GLLHR TEKL E +TY+Q+LP
Sbjct: 22 VEIQNYTINFGPQHPAAHGVLRLVMELDGEIVERVDPHVGLLHRGTEKLIEYKTYMQALP 81
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y DRLDY S +C EH+YV+A+EKLL++++P+RAQY+RV+F E+TR+ NH++ +GSH +D+
Sbjct: 82 YFDRLDYCSPLCMEHSYVLAVEKLLDLEVPLRAQYLRVLFAELTRISNHMLNLGSHVMDV 141
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GAM L+ F RED ++ +E VSGARMH+AY+RPGGV++D P +
Sbjct: 142 GAMTPNLWLFEIREDCMNFFERVSGARMHSAYFRPGGVHQDAPLKL-------------- 187
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
L D + R P+ ++ +L+ DNRI+KQR V I VS + A+ GF+
Sbjct: 188 ----------LTDIADWLDTRLPRLFEDAISLVADNRIFKQRNVDIATVSRDDAIKWGFS 237
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GPM+RGSG+ WDLRK QPY++Y+ ++FD+P+G GD YDR++VR+EE+RQS +I+KQC+
Sbjct: 238 GPMIRGSGIAWDLRKSQPYDVYDRMDFDVPVGTRGDCYDRFMVRVEEVRQSARIMKQCLG 297
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+ +GP+ S + K+ P R MK +ME LIHHFKL+TEGF+VP G++Y E PKGEF
Sbjct: 298 EM--PEGPIASLDRKVVPPKRAEMKRSMEALIHHFKLYTEGFHVPAGDVYVATESPKGEF 355
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLV+DG NKPYR KIR F+HLQ++ M GHM++D I+G DIVFGE DR
Sbjct: 356 GVYLVADGTNKPYRCKIRPTAFSHLQAMDFMSKGHMLADTTAILGAMDIVFGECDR 411
>gi|222085578|ref|YP_002544108.1| NADH dehydrogenase subunit D [Agrobacterium radiobacter K84]
gi|398376956|ref|ZP_10535136.1| NADH dehydrogenase I, D subunit [Rhizobium sp. AP16]
gi|221723026|gb|ACM26182.1| NADH-ubiquinone oxidoreductase chain D protein [Agrobacterium
radiobacter K84]
gi|397727283|gb|EJK87709.1| NADH dehydrogenase I, D subunit [Rhizobium sp. AP16]
Length = 396
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 232/416 (55%), Positives = 303/416 (72%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 6 VRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHAY +++EKLL I+IPIR Q IRV++ EI R+L+HL+ + + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAYALSVEKLLGIEIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHAAY RPGGV++DLPE
Sbjct: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYIRPGGVHQDLPE------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+ I D+ + F K +D+ + LLT NRI+KQR V IGVVS E + GF+G
Sbjct: 168 -------KLVQDIGDWCDPFLKALDDIDDLLTGNRIFKQRNVDIGVVSLEDCWAWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLR+ QPYE Y+ L FDIPIGKNGD YDRYL+R+ EMR+S +I+KQC+ L
Sbjct: 221 MVRGSGAAWDLRRSQPYECYSDLEFDIPIGKNGDCYDRYLIRMIEMRESVRIMKQCVNRL 280
Query: 580 --RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+ GPV S + K+ P R MK +ME LIHHFKL+TEG++VP GE+Y VE PKGEF
Sbjct: 281 LGDAKTGPVSSLDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYCAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG+NKPYR KIR+PG+AHLQ++ M GH ++DV ++G+ DIVFGE+DR
Sbjct: 341 GVYLVSDGSNKPYRCKIRAPGYAHLQAMDFMCRGHQLADVAAVLGSLDIVFGEVDR 396
>gi|334344827|ref|YP_004553379.1| NAD(P)H-quinone oxidoreductase subunit H [Sphingobium
chlorophenolicum L-1]
gi|334101449|gb|AEG48873.1| NAD(P)H-quinone oxidoreductase subunit H [Sphingobium
chlorophenolicum L-1]
Length = 411
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 223/419 (53%), Positives = 304/419 (72%), Gaps = 26/419 (6%)
Query: 275 FPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQ 334
F EI++Y +NFGPQHPAAHGVLRL++EL+GE+V + DPH+GLLHR TEKL E +TYLQ
Sbjct: 19 FGDTEIQNYTINFGPQHPAAHGVLRLVMELDGEIVERCDPHVGLLHRGTEKLIEYKTYLQ 78
Query: 335 SLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHS 394
+LPY DRLDY S + EH+YV+AIEKLLN+++P+RAQY+RV F E+TR+ NH++ +GSH
Sbjct: 79 ALPYFDRLDYCSPLGMEHSYVLAIEKLLNLEVPLRAQYLRVFFAELTRICNHMLNLGSHV 138
Query: 395 LDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNN 454
+D+GAM L+ F RED L+ +E SGARMH+A++RPGGV++D+P +
Sbjct: 139 MDVGAMTPNLWLFEIREDCLNFFERASGARMHSAWFRPGGVHQDVPLKL----------- 187
Query: 455 KATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSM 514
L D + R P+ ++ +L+ DNRI+KQR V I VVS E AL
Sbjct: 188 -------------LTDIADWLDTRLPRLFEDAMSLVVDNRIFKQRNVDIAVVSKEDALKW 234
Query: 515 GFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQ 574
GF+GPM+RGSG+ WD+RK QPY++Y+ + FD+P+G N D YDR++VR+EE+RQS +I+KQ
Sbjct: 235 GFSGPMIRGSGIPWDIRKAQPYDVYDRMEFDVPVGTNFDCYDRFMVRVEEVRQSARIMKQ 294
Query: 575 CIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPK 634
C+ + +GP+ S + K++ P R MK +ME LIHHFKL+TEGF+VP GE+Y E PK
Sbjct: 295 CLSEM--PEGPIASFDRKVSPPKRGEMKRSMEALIHHFKLYTEGFHVPAGEVYVATESPK 352
Query: 635 GEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
GEFG+YLV+DG+NKPYR KIR F+HLQ++ M+ GHM++D ++G DIVFGE DR
Sbjct: 353 GEFGVYLVADGSNKPYRCKIRPTAFSHLQAMDFMMKGHMLADTTAVLGAMDIVFGECDR 411
>gi|346994692|ref|ZP_08862764.1| NADH dehydrogenase subunit D [Ruegeria sp. TW15]
Length = 407
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 230/415 (55%), Positives = 300/415 (72%), Gaps = 26/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 19 KIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNLPY 78
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +AIEKL +++P R IRV++ EI R+LNHL+ + + ++D+G
Sbjct: 79 FDRLDYVAPMNQEHAWCLAIEKLTGVEVPRRGSLIRVLYSEIGRILNHLLNVTTQAMDVG 138
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE GAR+HAAY+RPGGV++DLP
Sbjct: 139 ALTPPLWGFEEREKLMVFYERACGARLHAAYFRPGGVHQDLPP----------------- 181
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD IE +++ FP +D+ + LLT+NRI+KQR IGVV+ + GF+G
Sbjct: 182 --------ELLDDIEAWSHEFPAVLDDIDGLLTENRIFKQRNADIGVVTEDDIQKYGFSG 233
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG+ WDLR+ QPYE Y+ F IP+GKNGD YDRYLVR+EEMRQS II+Q I
Sbjct: 234 VMVRGSGLAWDLRRAQPYECYDEFEFQIPVGKNGDCYDRYLVRMEEMRQSLLIIRQAIAK 293
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+R G V++ KIT P R +MK++ME LIHHFKL+TEGF+VP GE+Y+ VE PKGEFG
Sbjct: 294 IRDCPGDVLA-RGKITPPKRSDMKTSMESLIHHFKLYTEGFHVPAGEVYAAVEAPKGEFG 352
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLV+DG NKPYR K+R+PGF HLQ++ + GH ++DV IIGT D+VFGEIDR
Sbjct: 353 VYLVADGTNKPYRAKLRAPGFLHLQAMDHVAGGHQLADVAAIIGTMDVVFGEIDR 407
>gi|87200314|ref|YP_497571.1| NADH dehydrogenase subunit D [Novosphingobium aromaticivorans DSM
12444]
gi|123488914|sp|Q2G5Y6.1|NUOD_NOVAD RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|87135995|gb|ABD26737.1| NADH dehydrogenase subunit D [Novosphingobium aromaticivorans DSM
12444]
Length = 403
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 226/414 (54%), Positives = 304/414 (73%), Gaps = 26/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
I +Y +NFGPQHPAAHGVLR+++EL+GE++ + DPH+GLLHR TEKL E +TYLQ+LPY
Sbjct: 16 ITNYTINFGPQHPAAHGVLRMVMELDGEIIERIDPHVGLLHRGTEKLIEHKTYLQALPYF 75
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDY S + EH+YV+A+EKLLNI++P+RAQY+RV+F E+TR+ NH++ +GSH +D+GA
Sbjct: 76 DRLDYCSPLGMEHSYVLAVEKLLNIEVPLRAQYLRVLFAELTRICNHMLNLGSHVMDVGA 135
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M L+ F RED L+ +E SGARMH+A++RPGGV++D+P K+
Sbjct: 136 MTPNLWLFEIREDCLNFFERASGARMHSAWFRPGGVHQDVP----------------LKL 179
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L + + D+I++ R D+ +L+ DNRI+KQR V I VVS E AL GF+GP
Sbjct: 180 LTD-----MADWIDE---RLHPLFDDAMSLVVDNRIFKQRNVDIAVVSKEDALRWGFSGP 231
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG+ WDLRK QPY++Y+ + FDIP+G +GD YDR++VR+EE+RQS +I+KQCI+ +
Sbjct: 232 MIRGSGIPWDLRKSQPYDVYDRMEFDIPVGTSGDCYDRFMVRVEEVRQSARIMKQCIEQM 291
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
GPV S + K+ P R MK +ME LIHHFKL+TEGF+VP GE+Y E PKGEFG+
Sbjct: 292 --PDGPVASTDRKVVPPKRAEMKQSMEALIHHFKLYTEGFHVPAGEVYVATESPKGEFGV 349
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+NKPYR KIR F+HLQ++ M GHM+ D I+G D+VFGE DR
Sbjct: 350 YLVSDGSNKPYRCKIRPTAFSHLQAMDFMCKGHMLPDATAILGAIDVVFGECDR 403
>gi|408785982|ref|ZP_11197722.1| NADH dehydrogenase subunit D [Rhizobium lupini HPC(L)]
gi|424910132|ref|ZP_18333509.1| NADH dehydrogenase I, D subunit [Rhizobium leguminosarum bv. viciae
USDA 2370]
gi|392846163|gb|EJA98685.1| NADH dehydrogenase I, D subunit [Rhizobium leguminosarum bv. viciae
USDA 2370]
gi|408488171|gb|EKJ96485.1| NADH dehydrogenase subunit D [Rhizobium lupini HPC(L)]
Length = 396
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 226/416 (54%), Positives = 304/416 (73%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGP+HP+AHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 6 VRNFTINFGPEHPSAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +A+EKLL ++IP+R Q IRV++ EI R+L+H+M + + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAFALAVEKLLGLEIPMRGQLIRVLYSEIGRILSHIMNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M ++ F ERE L+ YE GARMH+AY+RPGGV++DLP
Sbjct: 126 MTPPVWGFEEREKLMVFYERACGARMHSAYFRPGGVHQDLPP------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I + + F +D E LLTDNRI+KQR V IGVVS E A + GFTG
Sbjct: 168 -------ELVDDIGKWCDPFITVLDNIEGLLTDNRIYKQRNVDIGVVSLEDAFAWGFTGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLR+ QPYE Y+ L FDIP+GKNGD YDRYL+R++EMR+S KI+KQC++ L
Sbjct: 221 MVRGSGAAWDLRRSQPYECYSDLEFDIPVGKNGDCYDRYLIRMQEMRESVKIMKQCVELL 280
Query: 580 RSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
GPV S + K+ P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGEF
Sbjct: 281 SGKHRIGPVSSLDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+Y+V+DG+NKPYR KIR+PG+AHLQ++ + GH ++DV ++G+ DIVFGE+DR
Sbjct: 341 GVYVVADGSNKPYRCKIRAPGYAHLQAMDFLCKGHQLADVTAVLGSLDIVFGEVDR 396
>gi|254419243|ref|ZP_05032967.1| NADH dehydrogenase (quinone), D subunit [Brevundimonas sp. BAL3]
gi|196185420|gb|EDX80396.1| NADH dehydrogenase (quinone), D subunit [Brevundimonas sp. BAL3]
Length = 414
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 236/414 (57%), Positives = 301/414 (72%), Gaps = 26/414 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
+ + +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E RTYLQ++PY+D
Sbjct: 26 RKFTINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLMEARTYLQNVPYLD 85
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYV+ M EHA+ +AIEKLL +++P RAQ IRV++ EI R+ NHL+ ++D+GA+
Sbjct: 86 RLDYVAPMNQEHAFCLAIEKLLGVEVPYRAQLIRVLYSEIGRIGNHLLNATMQAMDVGAL 145
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
L+ ERE L+ YE SGAR+HA Y+RPGGV++DLP
Sbjct: 146 TPPLWGHEEREKLMVFYERASGARLHANYFRPGGVHQDLPM------------------- 186
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
L+D I + + FPK + + E+L+T+NRI+KQR V IGVVS E+AL+ GFTG M
Sbjct: 187 ------DLIDDIGRWCHEFPKALTDIESLVTENRIFKQRNVDIGVVSKEQALAWGFTGVM 240
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
LRGS + WDLRK QPYE Y L FDIP+GKNGD +DRYL RIEEM+QS +I++QCI LR
Sbjct: 241 LRGSDIAWDLRKSQPYECYAELEFDIPVGKNGDCWDRYLCRIEEMKQSVRIMEQCIHKLR 300
Query: 581 SNKG-PVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G PV+ +NKI P R MK +ME LIHHFKL+TEGF P GE+Y+ VE PKGEFGI
Sbjct: 301 NCPGEPVMLEDNKIVPPRRGEMKRSMESLIHHFKLYTEGFKTPEGEVYASVEAPKGEFGI 360
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG NKPYR+KI +PGF HLQ++ + SGH ++DV I+G+ DIVFGE+DR
Sbjct: 361 YLVSDGTNKPYRVKISAPGFRHLQAMDWINSGHQLADVSAILGSLDIVFGEVDR 414
>gi|302655857|ref|XP_003019710.1| hypothetical protein TRV_06252 [Trichophyton verrucosum HKI 0517]
gi|291183452|gb|EFE39065.1| hypothetical protein TRV_06252 [Trichophyton verrucosum HKI 0517]
Length = 473
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 231/406 (56%), Positives = 290/406 (71%), Gaps = 27/406 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E +TY+Q+LPY
Sbjct: 86 KIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYMQALPY 145
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLNI+IP RA++IR MF EITR+LNHLM + SH++D+G
Sbjct: 146 FDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKWIRTMFGEITRILNHLMSVLSHAMDVG 205
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV++D+P
Sbjct: 206 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPL----------------- 248
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E LLTDNRIWK R VG+GVV+ AL+ GF+G
Sbjct: 249 --------GLLDDIYQWATQFADRIDETEELLTDNRIWKARTVGVGVVTAAEALNYGFSG 300
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 301 VMLRGSGVPWDIRKSQPYDAYGQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNK 360
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + KI+ P RI MK NME LIHHF LFT+G+ VP GE YS +E PKGE
Sbjct: 361 MPA--GPVRVEDYKISPPPRIAMKENMEALIHHFLLFTKGYTVPPGETYSAIEAPKGEMA 418
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQ 684
++LVSDG+ +PYR KIR+PGFAHL ++ GH+++D V IIGT
Sbjct: 419 VFLVSDGSERPYRCKIRAPGFAHLGCFDQLSRGHLLADAVAIIGTH 464
>gi|83858411|ref|ZP_00951933.1| NADH dehydrogenase delta subunit [Oceanicaulis sp. HTCC2633]
gi|83853234|gb|EAP91086.1| NADH dehydrogenase delta subunit [Oceanicaulis sp. HTCC2633]
Length = 396
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/417 (54%), Positives = 301/417 (72%), Gaps = 27/417 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ +NFGP HPAAHGVLR++LEL+GEVV + DPHIGLLHR TEKL E +TYLQ + Y
Sbjct: 5 DIRNFTINFGPVHPAAHGVLRMVLELDGEVVERVDPHIGLLHRGTEKLLEHKTYLQGIGY 64
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +AIEKL I +P RA Y+RV++ EI R+LNHL+ + + ++D+G
Sbjct: 65 FDRLDYVAPMNQEHAFCLAIEKLAGIPVPKRASYVRVLYSEIGRILNHLLNVTTQAMDVG 124
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE SGAR+HA Y+RPGGV++DLP+
Sbjct: 125 ALTPPLWGFEEREKLMGFYERASGARLHAHYFRPGGVHQDLPQ----------------- 167
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L+D I + +FP+++D+ ETLLT+NRI+K R V IGVVS + AL GF+G
Sbjct: 168 --------ELIDDIVAWCEQFPQHVDDLETLLTENRIFKARNVDIGVVSKQEALEWGFSG 219
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG+ WDLR+ QPYE+Y+ L F IP+GKNGD+YDRYL R+EEMR+S KI+KQC W
Sbjct: 220 VMVRGSGLAWDLRRSQPYEVYDELEFQIPLGKNGDNYDRYLCRMEEMRESVKIMKQCCDW 279
Query: 579 L--RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
L N+G V+ + K P R MK +ME LI HFKL+TEG +VP G+ Y+ VE PKGE
Sbjct: 280 LSREENQGDVLPVDTKFAPPRRAEMKRSMEALIQHFKLYTEGVHVPEGQYYAAVEAPKGE 339
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YL+ DG NKPYR+KIR+PGF HLQ++ + GHM++DV I+G+ DIVFGEIDR
Sbjct: 340 FGVYLIGDGTNKPYRLKIRAPGFPHLQAMDHLNKGHMLADVSAILGSLDIVFGEIDR 396
>gi|408379490|ref|ZP_11177084.1| NADH dehydrogenase subunit D [Agrobacterium albertimagni AOL15]
gi|407746974|gb|EKF58496.1| NADH dehydrogenase subunit D [Agrobacterium albertimagni AOL15]
Length = 396
Score = 480 bits (1236), Expect = e-132, Method: Compositional matrix adjust.
Identities = 230/416 (55%), Positives = 306/416 (73%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 6 VRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIETKTYLQALPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHAY +A+EKLL+I+IPIR Q IRV++ EI R+L+HL+ + + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAYSLAVEKLLDIQIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SGARMH+AY+RPGGV++DLP
Sbjct: 126 LTPPLWGFEEREKLMVFYERASGARMHSAYFRPGGVHQDLPH------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L++ I + ++FP+ +D+ + LLT NRI+KQR V IGVVS + + GF+G
Sbjct: 168 -------QLVEDIGKWCDQFPEKLDDIDDLLTGNRIFKQRNVDIGVVSLDDCWAWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLRK QPYE Y+ L+FDI +GKNGD YDRYL+R+ EMR+S KI+KQC+ L
Sbjct: 221 MVRGSGAAWDLRKSQPYECYSDLDFDIMVGKNGDCYDRYLIRMFEMRESVKIMKQCVNRL 280
Query: 580 --RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+ GPV S + K+ P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGEF
Sbjct: 281 LGDAKTGPVSSLDGKVVPPKRGEMKRSMEGLIHHFKLYTEGYHVPAGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G++LVSDG NKPYR KIR+PG+AHLQ++ + GH ++DV I+G+ DIVFGE+DR
Sbjct: 341 GVFLVSDGTNKPYRCKIRAPGYAHLQAMDFLCRGHQLADVSAILGSLDIVFGEVDR 396
>gi|148259935|ref|YP_001234062.1| NADH dehydrogenase subunit D [Acidiphilium cryptum JF-5]
gi|326403111|ref|YP_004283192.1| NADH-quinone oxidoreductase subunit D [Acidiphilium multivorum
AIU301]
gi|218534378|sp|A5FX11.1|NUOD_ACICJ RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|146401616|gb|ABQ30143.1| NADH dehydrogenase subunit D [Acidiphilium cryptum JF-5]
gi|325049972|dbj|BAJ80310.1| NADH-quinone oxidoreductase subunit D [Acidiphilium multivorum
AIU301]
Length = 406
Score = 480 bits (1235), Expect = e-132, Method: Compositional matrix adjust.
Identities = 229/418 (54%), Positives = 309/418 (73%), Gaps = 28/418 (6%)
Query: 277 VIEIKS-YKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQS 335
VI+I + +N GPQHPA HGVLRLI+ELEGE V +ADPHIGLLHR TEKL E ++YLQ+
Sbjct: 16 VIDINDRHTVNVGPQHPATHGVLRLIMELEGETVTRADPHIGLLHRGTEKLIEYKSYLQA 75
Query: 336 LPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSL 395
+PY DRLDYVS MC EHA+ +A E+LL +K+P RAQ+IRV+F EITR+LNHL+ +L
Sbjct: 76 VPYFDRLDYVSPMCCEHAFALATERLLGVKVPERAQWIRVLFAEITRILNHLLNAVHLAL 135
Query: 396 DIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNK 455
DIGA L+ + ERE LL +EAVSGAR HA Y+RPGGV +D+P
Sbjct: 136 DIGAQSPSLWGYEEREKLLTFHEAVSGARFHANYFRPGGVSKDMPT-------------- 181
Query: 456 ATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMG 515
L + I +++ +FPK +D+ ++LL +NRI++QRLV IGV+S E AL+MG
Sbjct: 182 -----------GLAEQIWEWSEKFPKFLDDLQSLLNENRIFRQRLVDIGVISAEDALAMG 230
Query: 516 FTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQC 575
F+GP LR SG+ WDLR+ QPY+ Y+ ++FDIP+G++GDS+DRYLVRI EM +S KII+Q
Sbjct: 231 FSGPNLRASGIAWDLRRAQPYDKYDEVDFDIPVGRHGDSFDRYLVRIREMAESLKIIRQA 290
Query: 576 IKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
+K + +GP+ ++KIT P R MK +ME LIHHFKL+TEG++VP G Y+ VE PKG
Sbjct: 291 LKAM--PEGPIKVQDHKITPPKRAEMKRSMEALIHHFKLYTEGYHVPAGTTYTAVEAPKG 348
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFG+YLV+DG+N+PYR KIR+ GF+HLQ+++ M GH+++D + ++G+ DIVFGE+DR
Sbjct: 349 EFGVYLVADGSNRPYRCKIRATGFSHLQAMNLMSKGHLLADAIAVLGSIDIVFGEVDR 406
>gi|159043860|ref|YP_001532654.1| NADH dehydrogenase subunit D [Dinoroseobacter shibae DFL 12]
gi|218534405|sp|A8LIT9.1|NUOD_DINSH RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|157911620|gb|ABV93053.1| NADH dehydrogenase I, D subunit [Dinoroseobacter shibae DFL 12]
Length = 404
Score = 480 bits (1235), Expect = e-132, Method: Compositional matrix adjust.
Identities = 231/415 (55%), Positives = 302/415 (72%), Gaps = 26/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 16 KIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNLPY 75
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +AIEKL +P R IRV++ EI R+LNHL+ I + ++D+G
Sbjct: 76 FDRLDYVAPMNQEHAWCLAIEKLTGTVVPRRGSLIRVLYCEIGRILNHLLNITTQAMDVG 135
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE GAR+HAAY+RPGGV++DLP
Sbjct: 136 ALTPPLWGFEEREKLMVFYERACGARLHAAYFRPGGVHQDLPP----------------- 178
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD IE +++ FP +D+ + LLT+NRI+KQR IGVV+ E L G++G
Sbjct: 179 --------DLLDDIEAWSHEFPSVMDDIDGLLTENRIFKQRNCDIGVVTEEEILEWGYSG 230
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG+ WDLR+ QPYE Y+ +F IP+GKNGD YDRYLVR++EMR+S KII+Q I
Sbjct: 231 VMVRGSGLAWDLRRAQPYECYDEFDFQIPVGKNGDCYDRYLVRMQEMRESLKIIQQAIVK 290
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR KG V++ K+T P+R +MK++ME LIHHFKL+TEGF+VP GE+Y+ VE PKGEFG
Sbjct: 291 LRETKGDVLA-RGKLTPPSRADMKTSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGEFG 349
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++L SDG N+PYR KIR+PG+ HLQS+ + GH ++DV IIGT D+VFGEIDR
Sbjct: 350 VFLKSDGTNRPYRAKIRAPGYLHLQSMDHVAKGHQLADVAAIIGTMDVVFGEIDR 404
>gi|254509923|ref|ZP_05121990.1| NADH dehydrogenase (quinone), D subunit [Rhodobacteraceae bacterium
KLH11]
gi|221533634|gb|EEE36622.1| NADH dehydrogenase (quinone), D subunit [Rhodobacteraceae bacterium
KLH11]
Length = 408
Score = 480 bits (1235), Expect = e-132, Method: Compositional matrix adjust.
Identities = 229/415 (55%), Positives = 300/415 (72%), Gaps = 26/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 20 KIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNLPY 79
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +AIEKL +++P R IRV++ E+ R+LNHL+ + + ++D+G
Sbjct: 80 FDRLDYVAPMNQEHAWCLAIEKLTGVEVPRRGSLIRVLYSEVGRVLNHLLNVTTQAMDVG 139
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE GAR+HAAY+RPGGV++DLP
Sbjct: 140 ALTPPLWGFEEREKLMVFYERACGARLHAAYFRPGGVHQDLPP----------------- 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD IE +++ FP +D+ + LLT+NRI+KQR IGVV+ + GF+G
Sbjct: 183 --------ELLDDIEAWSHEFPAVLDDIDGLLTENRIFKQRNADIGVVTEDDIQKYGFSG 234
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG+ WDLR+ QPYE Y+ F IP+GKNGD YDRYLVR+EEMRQS II+Q I
Sbjct: 235 VMVRGSGLAWDLRRAQPYECYDEFEFQIPVGKNGDCYDRYLVRMEEMRQSLLIIRQAIAK 294
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+R G V++ KIT P R +MK++ME LIHHFKL+TEGF+VP GE+Y+ VE PKGEFG
Sbjct: 295 IRECPGDVLA-RGKITPPKRSDMKTSMESLIHHFKLYTEGFHVPAGEVYAAVEAPKGEFG 353
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLV+DG NKPYR K+R+PGF HLQ++ + GH ++DV IIGT D+VFGEIDR
Sbjct: 354 VYLVADGTNKPYRAKLRAPGFLHLQAMDHVAGGHQLADVAAIIGTMDVVFGEIDR 408
>gi|347528702|ref|YP_004835449.1| NADH-quinone oxidoreductase subunit D [Sphingobium sp. SYK-6]
gi|345137383|dbj|BAK66992.1| NADH-quinone oxidoreductase chain D [Sphingobium sp. SYK-6]
Length = 411
Score = 480 bits (1235), Expect = e-132, Method: Compositional matrix adjust.
Identities = 228/426 (53%), Positives = 308/426 (72%), Gaps = 29/426 (6%)
Query: 268 GHPFRKDFPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLA 327
G PF D I++Y +NFGPQHPAAHGVLRL++E++GE+V + DPH+GLLHR TEKL
Sbjct: 15 GEPFPGD---TAIQNYTINFGPQHPAAHGVLRLVMEMDGEIVERCDPHVGLLHRGTEKLI 71
Query: 328 EQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHL 387
E +TYLQ+LPY DRLDY S + EH+YV+AIEKLLN+++P+RAQY+RV F E+TR+ NH+
Sbjct: 72 EYKTYLQALPYFDRLDYCSPLGMEHSYVLAIEKLLNLEVPLRAQYLRVFFAELTRICNHM 131
Query: 388 MWIGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYK 447
+ +GSH +D+GAM L+ F RED L+ +E SGARMH+AY+RPGGV++D+P
Sbjct: 132 LNLGSHVMDVGAMTPNLWMFEIREDCLNFFERASGARMHSAYFRPGGVHQDVP------- 184
Query: 448 SSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVS 507
K+L + G LD NR P+ ++ +L+ DNRI+KQR V I V S
Sbjct: 185 ---------LKLLTD--IGDWLD------NRLPRLFEDAISLVADNRIFKQRNVDIAVCS 227
Query: 508 PERALSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQ 567
E AL GF+GPM+RGSG+ WD+RK QPY++Y+ + FD+P+G N D YDR++VR+EE+RQ
Sbjct: 228 KEDALKWGFSGPMIRGSGIPWDIRKAQPYDVYDRMEFDVPVGTNYDCYDRFMVRVEEVRQ 287
Query: 568 SNKIIKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIY 627
S +I++QC+ + +GPV S + K+ P R MK +ME LIHHFKL+TEGF+VP GE+Y
Sbjct: 288 SARIMRQCLNEM--PEGPVASFDRKVVPPKRGEMKQSMEALIHHFKLYTEGFHVPEGEVY 345
Query: 628 SCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIV 687
E PKGEFG+YLVSDG+NKPYR KIR F+HLQ++ ++ GHM++D ++G DIV
Sbjct: 346 VATESPKGEFGVYLVSDGSNKPYRCKIRPTAFSHLQAMDFLMKGHMLADTTAVLGAMDIV 405
Query: 688 FGEIDR 693
FGE DR
Sbjct: 406 FGECDR 411
>gi|90423905|ref|YP_532275.1| NADH dehydrogenase subunit D [Rhodopseudomonas palustris BisB18]
gi|122476332|sp|Q215I0.1|NUOD_RHOPB RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|90105919|gb|ABD87956.1| NADH dehydrogenase I, D subunit [Rhodopseudomonas palustris BisB18]
Length = 396
Score = 480 bits (1235), Expect = e-132, Method: Compositional matrix adjust.
Identities = 235/420 (55%), Positives = 303/420 (72%), Gaps = 27/420 (6%)
Query: 276 PVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQS 335
P ++++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E +TYLQ+
Sbjct: 2 PEGALRNFTINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIEAKTYLQA 61
Query: 336 LPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSL 395
+PY DRLDYV+ M EHA+ +A EKLL+I +P RAQ IRV++ EI R+L+HL+ + + ++
Sbjct: 62 IPYFDRLDYVAPMNQEHAFCLAAEKLLDIAVPRRAQLIRVLYCEIGRILSHLLNVTTQAM 121
Query: 396 DIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNK 455
D+GA+ L+ F ERE L+ YE SG+RMHAAY+R GGV++DLP
Sbjct: 122 DVGALTPPLWGFEEREKLMMFYERASGSRMHAAYFRVGGVHQDLPP-------------- 167
Query: 456 ATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMG 515
L+D IE + FP+ ID+ + LLT NRI+KQR V IGVV+ +A G
Sbjct: 168 -----------KLVDDIEAWCVAFPQVIDDLDRLLTGNRIFKQRNVDIGVVTLAQAWEWG 216
Query: 516 FTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQC 575
F+G M+RGSG WDLRK QPYE Y L FDIPIGKNGD YDRY +R+EEMRQS +I++QC
Sbjct: 217 FSGVMVRGSGAAWDLRKSQPYECYAELEFDIPIGKNGDCYDRYCIRMEEMRQSVRIMQQC 276
Query: 576 IKWLRS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHP 633
I LR+ GPV +NKI P R MK +ME LIHHFKL+TEGF VP GE+Y VE P
Sbjct: 277 IAKLRAPDGGGPVAVQDNKIFPPRRGEMKRSMESLIHHFKLYTEGFRVPAGEVYVAVEAP 336
Query: 634 KGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
KGEFG++LVSDG+NKPY+ KIR+PGFAHLQ++ + GH+++DV I+G+ DIVFGE+DR
Sbjct: 337 KGEFGVFLVSDGSNKPYKCKIRAPGFAHLQAMDFISRGHLLADVSAILGSLDIVFGEVDR 396
>gi|456354959|dbj|BAM89404.1| NADH dehydrogenase subunit D [Agromonas oligotrophica S58]
Length = 398
Score = 479 bits (1234), Expect = e-132, Method: Compositional matrix adjust.
Identities = 230/416 (55%), Positives = 307/416 (73%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 8 LRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIETKTYLQAIPYF 67
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +A EKLL I++P R Q +RV++ EI R+L+HL+ + + ++D+GA
Sbjct: 68 DRLDYVAPMNQEHAFCLAAEKLLGIEVPRRGQLVRVLYCEIGRILSHLLNVTTQAMDVGA 127
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHAA++R GGV++DLP
Sbjct: 128 LTPPLWGFEEREKLMVFYERASGSRMHAAFFRIGGVHQDLPP------------------ 169
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I+ + + F K +D+ + LLT NRI+KQR V IGVV+ ++A GF+G
Sbjct: 170 -------KLIDDIDAWCDPFLKVVDDLDRLLTANRIFKQRNVDIGVVTLKQAWEWGFSGV 222
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLRK QPYE Y ++FDIPIGKNGD YDRYL+R+EEMRQS +I+KQCI+ L
Sbjct: 223 MVRGSGAAWDLRKSQPYECYAEMDFDIPIGKNGDCYDRYLIRMEEMRQSVRIMKQCIQKL 282
Query: 580 RS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
R+ +GPV+ +NKI P R MK +ME LIHHFKL+TEG +VP GE+Y VE PKGEF
Sbjct: 283 RAPDGQGPVVVADNKIAPPRRGEMKRSMEALIHHFKLYTEGVHVPAGEVYVAVEAPKGEF 342
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLV+DG+NKPY+ KIR+PGFAHLQ++ + GH+++DV I+G+ DIVFGE+DR
Sbjct: 343 GVYLVADGSNKPYKCKIRAPGFAHLQAMDFLCRGHLLADVSAILGSLDIVFGEVDR 398
>gi|126727145|ref|ZP_01742982.1| NADH dehydrogenase delta subunit [Rhodobacterales bacterium
HTCC2150]
gi|126703573|gb|EBA02669.1| NADH dehydrogenase delta subunit [Rhodobacterales bacterium
HTCC2150]
Length = 404
Score = 479 bits (1234), Expect = e-132, Method: Compositional matrix adjust.
Identities = 230/415 (55%), Positives = 307/415 (73%), Gaps = 26/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 16 KIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNLPY 75
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +AIEKL +++P RA IRV++ EI R+LNH++ + + ++D+G
Sbjct: 76 FDRLDYVAPMNQEHAWCLAIEKLTGVEVPRRASLIRVLYSEIGRVLNHILNVTTQAMDVG 135
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE SGAR+HAAY+RPGGV++DLP+ + +
Sbjct: 136 ALTPPLWGFEEREKLMVFYERASGARLHAAYFRPGGVHQDLPDDLIDDIDT--------- 186
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+ + FP + + + LLTDNRI+KQR V IGV+S + AL GF+G
Sbjct: 187 ----------------WADEFPAVLADIDGLLTDNRIFKQRNVDIGVISQQEALDWGFSG 230
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG+ WDLR+ QPYE Y+ +FDIP+G +GD YDRYL R++EMR+S KIIKQ +
Sbjct: 231 VMVRGSGMAWDLRRSQPYECYDEFDFDIPVGTSGDCYDRYLCRMQEMRESLKIIKQAVAK 290
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR KG V++ KIT P+R +MK++ME LIHHFKL+TEGF+VP GEIY+CVE PKGEFG
Sbjct: 291 LRVEKGDVLA-RGKITPPSRGDMKTSMESLIHHFKLYTEGFHVPAGEIYACVEAPKGEFG 349
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++LVSDG+NKPY+ KIR+PGF HLQ++ + +GH ++DV IIGT D+VFGEIDR
Sbjct: 350 VFLVSDGSNKPYKAKIRAPGFLHLQAMDHVATGHQLADVAAIIGTMDVVFGEIDR 404
>gi|399059561|ref|ZP_10745177.1| NADH dehydrogenase I, D subunit [Novosphingobium sp. AP12]
gi|398039268|gb|EJL32407.1| NADH dehydrogenase I, D subunit [Novosphingobium sp. AP12]
Length = 403
Score = 479 bits (1234), Expect = e-132, Method: Compositional matrix adjust.
Identities = 220/414 (53%), Positives = 307/414 (74%), Gaps = 26/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
I +Y +NFGPQHPAAHGVLR+++EL+GE++ + DPH+GLLHR TEKL E +TYLQ+LPY
Sbjct: 16 ITNYTINFGPQHPAAHGVLRMVMELDGEIIERIDPHVGLLHRGTEKLIEHKTYLQALPYF 75
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDY S + EH+YV+AIEKLLN+++P+RAQY+RV+F E+TR+ NH++ +GSH +D+GA
Sbjct: 76 DRLDYCSPLAMEHSYVLAIEKLLNLEVPLRAQYLRVLFAELTRICNHMLNMGSHVMDVGA 135
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M L+ F RED L+ +E SGARMH+A++RPGGV++D+P K+
Sbjct: 136 MTPNLWLFEIREDCLNFFERASGARMHSAWFRPGGVHQDVP----------------LKL 179
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L + L D+++ R P+ ++ +L+ DNRI+KQR V I + S E +L+ GF+GP
Sbjct: 180 LTD-----LADWLD---TRLPRLFEDAMSLVVDNRIFKQRNVDIAITSREDSLAWGFSGP 231
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+R +G+ WD+RK QPY++Y+ ++F+IP+G N D YDR++VR+EE+RQS KI+KQC++ +
Sbjct: 232 MIRAAGIPWDIRKSQPYDVYDRMDFEIPVGTNSDCYDRFMVRVEEVRQSAKIMKQCLREM 291
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+GPV S++ K+ P R MKS+ME LIHHFKL+TEGF+VP GE+Y E PKGEFG+
Sbjct: 292 --PEGPVASDDRKVVPPKRAEMKSSMESLIHHFKLYTEGFHVPAGEVYVATESPKGEFGV 349
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+NKPYR KIR F+HLQ++ M GHM+ D I+G D+VFGE DR
Sbjct: 350 YLVSDGSNKPYRCKIRPTAFSHLQAMDFMSKGHMLPDATAILGAIDVVFGECDR 403
>gi|393766078|ref|ZP_10354635.1| NADH dehydrogenase I subunit D [Methylobacterium sp. GXF4]
gi|392728451|gb|EIZ85759.1| NADH dehydrogenase I subunit D [Methylobacterium sp. GXF4]
Length = 396
Score = 479 bits (1234), Expect = e-132, Method: Compositional matrix adjust.
Identities = 230/416 (55%), Positives = 301/416 (72%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
I+++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TYLQ+ PY
Sbjct: 6 IRNFAINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEHKTYLQATPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVS M EHA+ +AIEKL I++P RAQ IRV+F EI RLL+HL+ + + ++D+GA
Sbjct: 66 DRLDYVSPMNQEHAFCLAIEKLAGIEVPRRAQLIRVLFCEIGRLLSHLLNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SGAR+HA Y+RPGGV++DLP
Sbjct: 126 LTPPLWGFEEREKLMIFYERASGARLHANYFRPGGVHQDLPP------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I+ F + F + + + + L+ NRI+KQR V IG+VS + + GF+G
Sbjct: 168 -------KLIDDIDAFCDPFLQVVQDLDDLVMANRIFKQRNVDIGIVSVDECMEWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG+ WDLRK QPYE Y + FDIP+G+NGD+YDR ++R+EEMR+S KI+KQC L
Sbjct: 221 MLRGSGIPWDLRKAQPYECYEEMEFDIPVGRNGDTYDRQVIRMEEMRESAKIMKQCCAKL 280
Query: 580 R--SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
R + +GP+ + + K P R MK +ME LIHHFKL+TEGF+VP GE+Y+ VE PKGEF
Sbjct: 281 REPAGQGPIAAIDGKFAPPPRREMKRSMEALIHHFKLYTEGFHVPEGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG NKPYR KIR+PGFAHLQ++ M GH+++DV ++GT DIVFGE+DR
Sbjct: 341 GVYLVSDGTNKPYRCKIRAPGFAHLQAMDWMCRGHLLADVSCVLGTLDIVFGEVDR 396
>gi|84516739|ref|ZP_01004097.1| NADH dehydrogenase I, D subunit [Loktanella vestfoldensis SKA53]
gi|84509207|gb|EAQ05666.1| NADH dehydrogenase I, D subunit [Loktanella vestfoldensis SKA53]
Length = 412
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 228/415 (54%), Positives = 301/415 (72%), Gaps = 26/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 24 KIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNLPY 83
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVS M EHA+ +AIEKL +P RA IRV++ EI R+LNHLM + + ++D+G
Sbjct: 84 FDRLDYVSPMNQEHAWCLAIEKLTGTVVPRRASLIRVLYSEIGRILNHLMNVTTQAMDVG 143
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE GAR+HAAY+RPGGV++DLP+
Sbjct: 144 ALTPPLWGFEEREKLMVFYERACGARLHAAYFRPGGVHQDLPD----------------- 186
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+L++ I+ + FPK +D+ ++LLT+NRI+KQR IGVV+ + GF+G
Sbjct: 187 --------ALIEDIDAWAVTFPKVLDDIDSLLTENRIFKQRNCDIGVVTEQDIHDWGFSG 238
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG+ WDLR+ QPYE Y+ F +P+GKNGD YDR+L R+EEMRQS II+Q
Sbjct: 239 VMVRGSGLAWDLRRAQPYECYDEFEFQVPVGKNGDCYDRFLCRMEEMRQSTHIIRQACAK 298
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR KG V++ K+T P+R MK++ME LIHHFKL+TEGF+VP GE+Y+ VE PKGEFG
Sbjct: 299 LRVEKGDVMA-RGKMTPPSRGEMKTSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGEFG 357
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLV+DG NKPYR K+R+PGF HLQ++ + +GH ++DV IIGT D+VFGEIDR
Sbjct: 358 VYLVADGTNKPYRAKLRAPGFLHLQAMDHIATGHQLADVAAIIGTLDVVFGEIDR 412
>gi|92116744|ref|YP_576473.1| NADH dehydrogenase subunit D [Nitrobacter hamburgensis X14]
gi|122418316|sp|Q1QP34.1|NUOD1_NITHX RecName: Full=NADH-quinone oxidoreductase subunit D 1; AltName:
Full=NADH dehydrogenase I subunit D 1; AltName:
Full=NDH-1 subunit D 1
gi|91799638|gb|ABE62013.1| NADH dehydrogenase subunit D [Nitrobacter hamburgensis X14]
Length = 396
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 238/415 (57%), Positives = 298/415 (71%), Gaps = 27/415 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
+++ +NFGPQHPAAHGVLRL+LEL+GEVVR+ DPHIGLLHR TEKL E +TYLQ+LPY D
Sbjct: 7 RNFTINFGPQHPAAHGVLRLVLELDGEVVRRVDPHIGLLHRGTEKLIEHKTYLQALPYFD 66
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYV+ M EHA+ +A EKLLNI IP R Q IRV++ EI RLL+HL+ + + ++D+GA+
Sbjct: 67 RLDYVAPMNQEHAFCLATEKLLNITIPKRGQLIRVLYCEIGRLLSHLLNVTTQAMDVGAL 126
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
L+ F ERE L+ YE SGARMHA Y+R GGV++DLP
Sbjct: 127 TPPLWGFEEREKLMVFYERASGARMHANYFRVGGVHQDLP-------------------- 166
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
LLD I DF + F K D+ E LLT+NRI+KQR VGI V A GF+G M
Sbjct: 167 -----SKLLDDIWDFCDPFLKVCDDLEGLLTENRIFKQRNVGIAEVKLADAWGWGFSGVM 221
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
+RGSG WDLRK QPYE Y+ L+FDIPIGK+GD YDRYLVR+EEMRQS +I+KQC++ LR
Sbjct: 222 VRGSGAAWDLRKAQPYECYSELDFDIPIGKHGDCYDRYLVRMEEMRQSVRIMKQCLEKLR 281
Query: 581 --SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+GPV + ++KI P+R MK +ME +I HFKL+TEG VP GE+Y VE PKGEFG
Sbjct: 282 LPEGQGPVATRDHKIVPPSRAEMKRSMEAMIEHFKLYTEGHRVPAGEVYVAVEAPKGEFG 341
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG N+PY+ KIR+P FAHL ++ + GHM++DV IIG+ DIVFGEIDR
Sbjct: 342 VYLVSDGTNQPYKCKIRAPSFAHLSAMDFLTRGHMLADVSAIIGSLDIVFGEIDR 396
>gi|84502608|ref|ZP_01000727.1| NADH dehydrogenase I, D subunit [Oceanicola batsensis HTCC2597]
gi|84389003|gb|EAQ01801.1| NADH dehydrogenase I, D subunit [Oceanicola batsensis HTCC2597]
Length = 407
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 230/416 (55%), Positives = 302/416 (72%), Gaps = 26/416 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ LNFGPQHPAAHGVLRL+LEL+GE+V + DPH+GLLHR TEKL E RTYLQ+LPY
Sbjct: 17 KIRNFNLNFGPQHPAAHGVLRLVLELDGEIVERCDPHVGLLHRGTEKLMESRTYLQNLPY 76
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
+DRLDYV+ M EHA+ +AIEKL + +P RA IRV++ EI R+LNHLM + + ++D+G
Sbjct: 77 LDRLDYVAPMNQEHAWCLAIEKLTGVVVPRRASLIRVLYSEIGRVLNHLMNVTTQAMDVG 136
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F RE+L+ YE GAR+HAAY+RPGGV++DLP
Sbjct: 137 ALTPPLWGFEHREELMIFYERACGARLHAAYFRPGGVHQDLPP----------------- 179
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD IE+++ RF +D+ LLT+NRI+KQR V IG+V+ + GF+G
Sbjct: 180 --------KLLDDIEEWSERFGGFLDDLNNLLTENRIFKQRNVDIGIVTEDDIQRYGFSG 231
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG+ WDLR+ QPYE Y+ +F IP+GKNGD YDRYL R+EEMRQS II QC++
Sbjct: 232 VMVRGSGLAWDLRRAQPYECYDEFDFQIPVGKNGDCYDRYLCRVEEMRQSTSIILQCLEK 291
Query: 579 LRSNKGPV-ISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
LR+ +G I + KIT P RI MK++ME LIHHFKL+TEGF VP G++Y+ VE PKGEF
Sbjct: 292 LRAPEGQGDILSRGKITPPKRIEMKTSMEALIHHFKLYTEGFRVPEGQVYAAVEAPKGEF 351
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG N+PYR K+R+PG+ HL ++ + +GH ++DV IIGT DIVFGEIDR
Sbjct: 352 GVYLVSDGTNRPYRAKLRAPGYPHLAAMDHIATGHQLADVAAIIGTLDIVFGEIDR 407
>gi|418296079|ref|ZP_12907923.1| NADH dehydrogenase subunit D [Agrobacterium tumefaciens CCNWGS0286]
gi|355539511|gb|EHH08749.1| NADH dehydrogenase subunit D [Agrobacterium tumefaciens CCNWGS0286]
Length = 396
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 227/416 (54%), Positives = 303/416 (72%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGP+HP+AHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 6 VRNFTINFGPEHPSAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +A+EKLL ++IP+R Q IRV++ EI R+L+H+M + + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAFALAVEKLLGLEIPMRGQLIRVLYSEIGRILSHIMNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M ++ F ERE L+ YE GARMH+AY RPGGV++DLP
Sbjct: 126 MTPPVWGFEEREKLMVFYERACGARMHSAYVRPGGVHQDLPP------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I + + F +D E LLTDNRI+KQR V IGVVS E A + GFTG
Sbjct: 168 -------ELVDDIGKWCDPFLTVLDNIEGLLTDNRIYKQRNVDIGVVSLEDAFAWGFTGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLR+ QPYE Y+ L FDIP+GKNGD YDRYL+R++EMR+S KI+KQC+ L
Sbjct: 221 MVRGSGAAWDLRRAQPYECYSDLEFDIPVGKNGDCYDRYLIRMQEMRESVKIMKQCVDLL 280
Query: 580 --RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
R GPV S + K+ P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGEF
Sbjct: 281 SGRHRIGPVSSLDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+Y+V+DG+NKPYR KIR+PG+AHLQ++ + GH ++DV ++G+ DIVFGE+DR
Sbjct: 341 GVYVVADGSNKPYRCKIRAPGYAHLQAMDFLCKGHQLADVTAVLGSLDIVFGEVDR 396
>gi|407776919|ref|ZP_11124190.1| NADH dehydrogenase subunit D [Nitratireductor pacificus pht-3B]
gi|407301084|gb|EKF20205.1| NADH dehydrogenase subunit D [Nitratireductor pacificus pht-3B]
Length = 396
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 229/421 (54%), Positives = 304/421 (72%), Gaps = 27/421 (6%)
Query: 275 FPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQ 334
P ++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TYLQ
Sbjct: 1 MPEASVRNFNINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEAKTYLQ 60
Query: 335 SLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHS 394
++PY DRLDYV+ M EHA+ +A+E+LL+I++PIR Q IRV+F EI R+L+HL+ + + +
Sbjct: 61 AVPYFDRLDYVAPMNQEHAFALAVERLLDIEVPIRGQLIRVLFSEIGRILSHLLNVTTQA 120
Query: 395 LDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNN 454
+D+GA+ L+ F ERE L+ YE GARMHAAY+RPGGV++D+P+
Sbjct: 121 MDVGALTPPLWGFEEREKLMVFYERACGARMHAAYFRPGGVHQDIPD------------- 167
Query: 455 KATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSM 514
L++ I + + F + + LLT NRI+KQR V IGVVS E A +
Sbjct: 168 ------------HLVEDIGKWIDPFLVTVKNLDDLLTGNRIFKQRNVDIGVVSLEDAWAW 215
Query: 515 GFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQ 574
GF+G M+RGSG WDLRK QPYE Y + FDIPIGKNGD YDRYL+R+EEMRQS KI++Q
Sbjct: 216 GFSGVMVRGSGAAWDLRKSQPYECYPQMEFDIPIGKNGDCYDRYLIRMEEMRQSAKIMRQ 275
Query: 575 CIKWLRSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEH 632
C+ L + GPV + + K+ P R MK +ME LIHHFKL+TEG+ VP GE+Y+ VE
Sbjct: 276 CVDRLLGAQRTGPVSNMDGKVVPPKRGQMKRSMEALIHHFKLYTEGYRVPEGEVYAAVEA 335
Query: 633 PKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEID 692
PKGEFG+YLVSDG+NKPYR K+R+PGFAHLQ++ + GH+++DV ++G+ DIVFGE+D
Sbjct: 336 PKGEFGVYLVSDGSNKPYRCKLRAPGFAHLQAMDFLCRGHLLADVSAVLGSLDIVFGEVD 395
Query: 693 R 693
R
Sbjct: 396 R 396
>gi|262277298|ref|ZP_06055091.1| NADH dehydrogenase (quinone), d subunit [alpha proteobacterium
HIMB114]
gi|262224401|gb|EEY74860.1| NADH dehydrogenase (quinone), d subunit [alpha proteobacterium
HIMB114]
Length = 391
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 234/415 (56%), Positives = 301/415 (72%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
E K+ LNFGPQHPAAHGVLRLILEL+GEVV +ADPHIGLLHR TEKL E +TY Q++PY
Sbjct: 4 EFKTVNLNFGPQHPAAHGVLRLILELDGEVVERADPHIGLLHRGTEKLIEHKTYTQAVPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +A+EKLLNI +PIRA+ IRV F EI R+L+H++ I + +LD+G
Sbjct: 64 FDRLDYVAPMNQEHAFALAVEKLLNIDVPIRAKNIRVAFCEIGRILSHILNITTQALDVG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE VSG+R+HA Y+RPGGV+ DLP + +
Sbjct: 124 ALTPSLWGFEEREKLMVFYERVSGSRLHANYFRPGGVHIDLPTGLDK------------- 170
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
D +E F FPK ID+ E LLTDNRI+KQR V IG+VS + AL GF+G
Sbjct: 171 -----------DILE-FCKSFPKVIDDLENLLTDNRIFKQRNVDIGIVSVQEALDHGFSG 218
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG+ WDLRK QPY+ Y F +P+GKNGD YDRYL RIEEMR+S KII Q +
Sbjct: 219 VMIRGSGIPWDLRKSQPYDGYENYEFKVPVGKNGDCYDRYLCRIEEMRESVKIITQALSN 278
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L GP+++ + ++ P R +MK++ME LI+HFKL+TEG+ VP GE Y+ VE PKGEFG
Sbjct: 279 LPD--GPIMTLDTRVGPPKRSDMKTSMEALINHFKLYTEGYSVPKGETYAAVEAPKGEFG 336
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLV+DG NKPYR KI++PGF HLQ++ +I GHM++DV ++G+ DIVFGE+DR
Sbjct: 337 VYLVADGTNKPYRCKIKAPGFTHLQAMDYLIKGHMLADVPALLGSMDIVFGEVDR 391
>gi|304322204|ref|YP_003855847.1| NADH dehydrogenase subunit delta [Parvularcula bermudensis
HTCC2503]
gi|303301106|gb|ADM10705.1| NADH dehydrogenase delta subunit [Parvularcula bermudensis
HTCC2503]
Length = 406
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 236/413 (57%), Positives = 301/413 (72%), Gaps = 27/413 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
+ + +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E +TYLQ++PY D
Sbjct: 21 RPFTINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIEYKTYLQAIPYFD 80
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYV+ M EHA+V+A EKLL + +P RA+ IR ++ EI R L+HL+ I + ++D+GA+
Sbjct: 81 RLDYVAPMNQEHAFVLAAEKLLELDVPRRAKIIRTLYCEIGRQLSHLLNITTQAMDVGAL 140
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
L+ F ERE L+ YE GAR+HAAY+R GGV++DLP+
Sbjct: 141 TPPLWGFEEREKLMVFYERACGARLHAAYFRVGGVHQDLPQ------------------- 181
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
LLD I ++ FP+ +D+ E L+TDNRI+KQR V IGVVS E A + GF+G M
Sbjct: 182 ------DLLDDIGEWCETFPQVLDDIEGLITDNRIFKQRNVDIGVVSREEAFAWGFSGVM 235
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
LRGSGV WDLRK QPYEIY+ L+FDI IGKNGD YDRYLVRIEEM+QS KI+KQC+ +
Sbjct: 236 LRGSGVPWDLRKSQPYEIYDELDFDIAIGKNGDCYDRYLVRIEEMKQSLKIMKQCLALI- 294
Query: 581 SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIY 640
GP+++ + +I P R MK++ME LI+HFKL+TEG VP GE Y+ VE PKGEFG+Y
Sbjct: 295 -EPGPIMTEDPRIGPPRRGEMKTSMEALINHFKLYTEGPKVPAGEAYAAVEAPKGEFGVY 353
Query: 641 LVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
LVS G NKPYR KIR+PG+AHLQ++ M GHM++DV IIGT DIVFGE+DR
Sbjct: 354 LVSQGTNKPYRCKIRAPGYAHLQAMDWMNRGHMLADVSAIIGTLDIVFGEVDR 406
>gi|399036617|ref|ZP_10733623.1| NADH dehydrogenase I, D subunit [Rhizobium sp. CF122]
gi|398065786|gb|EJL57402.1| NADH dehydrogenase I, D subunit [Rhizobium sp. CF122]
Length = 396
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 225/416 (54%), Positives = 306/416 (73%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGP+HP+AHGVLRL+LEL+GE++ + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 6 VRNFTINFGPEHPSAHGVLRLVLELDGEIIERVDPHIGLLHRGTEKLIETKTYLQAVPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +A+EK+L ++IPIR Q IRV++ EI R+L+H+M + + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAFALAVEKMLKLEIPIRGQLIRVLYSEIGRILSHIMNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M ++ F ERE L+ YE GARMH+AY+RPGGV++D+P
Sbjct: 126 MTPPVWGFEEREKLMVFYERACGARMHSAYFRPGGVHQDIPP------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L++ I + + F K +D+ E LLTDNRI+KQR V IGVVS A S GF+G
Sbjct: 168 -------ELVEDIGKWCDPFLKILDDIEGLLTDNRIFKQRNVDIGVVSLADAWSWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLR+ QPYE YN + FDIPIGKNGD YDRYL+R+ EMRQS +I+KQC++ L
Sbjct: 221 MVRGSGAAWDLRRSQPYECYNDMEFDIPIGKNGDCYDRYLIRMIEMRQSVRIMKQCVERL 280
Query: 580 --RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+ GPV S + K+ P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGEF
Sbjct: 281 MGSAKTGPVSSIDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+Y+V+DG+NKPYR KIR+PG+AHLQ++ + GHM++DV ++G+ DIVFGE+DR
Sbjct: 341 GVYVVADGSNKPYRCKIRAPGYAHLQAMDFLCKGHMLADVTAVLGSLDIVFGEVDR 396
>gi|338739720|ref|YP_004676682.1| NADH-quinone oxidoreductase subunit D [Hyphomicrobium sp. MC1]
gi|337760283|emb|CCB66114.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
[Hyphomicrobium sp. MC1]
Length = 396
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 229/417 (54%), Positives = 304/417 (72%), Gaps = 27/417 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI+++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TY+Q++ Y
Sbjct: 5 EIRNFNINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEHKTYMQAIGY 64
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EH++ +A EKLL +++P RAQ IRV++ EI RLL+HL+ + + ++D+G
Sbjct: 65 FDRLDYVAPMNQEHSFCLAAEKLLGLEVPRRAQLIRVLYSEIGRLLSHLLNVTTQAMDVG 124
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE SG+RMHA Y+R GGV++DLP+
Sbjct: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAKYFRIGGVHQDLPD----------------- 167
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L+D I F + F K +D+ + LLT+NRI+KQR V IGVV + A + GF+G
Sbjct: 168 --------QLIDDIYAFCDPFLKVLDDIDGLLTENRIFKQRNVDIGVVPLDEAFAWGFSG 219
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG WDLRK QPYE Y L+FDIPIGKNGD YDRYL+R++EMR+S K++KQC +
Sbjct: 220 VMVRGSGAAWDLRKAQPYECYAELDFDIPIGKNGDCYDRYLIRMQEMRESTKLMKQCCEL 279
Query: 579 LR--SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
L+ S +GP ++ N K+ P R MK +ME LIHHFKL+TEG +VP GE+Y+ VE PKGE
Sbjct: 280 LKSASGQGPHVAQNKKVVPPKRAEMKRSMEALIHHFKLYTEGIHVPPGEVYAAVEAPKGE 339
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YLV+DG+NKPYR KIR+PGF HL ++ + GHM++DV I+G+ DIVFGEIDR
Sbjct: 340 FGVYLVADGSNKPYRCKIRAPGFPHLAAMDHINRGHMLADVSAILGSLDIVFGEIDR 396
>gi|336377083|gb|EGO05418.1| Ndufs2, NADH:ubiquinone oxidoreductase 49 kd subunit [Serpula
lacrymans var. lacrymans S7.3]
gi|336390122|gb|EGO31265.1| NdufS2, NADH ubiquinone oxidoreductase 49 kd subunit [Serpula
lacrymans var. lacrymans S7.9]
Length = 465
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 228/415 (54%), Positives = 294/415 (70%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++ + +NFGPQHPAAHGVLR+ILEL GE + +ADPHIGLLHR TEKL E +TY Q+LPY
Sbjct: 78 KMRHFTVNFGPQHPAAHGVLRMILELNGEEILRADPHIGLLHRGTEKLIEYKTYTQALPY 137
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLNI+ P RA++IR +F EITR+L+HLM + SH++D+G
Sbjct: 138 FDRLDYVSMMTNELCFTLAVEKLLNIEAPERAKWIRTLFGEITRVLSHLMAVLSHAMDVG 197
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+H+AY RPGGV DLP
Sbjct: 198 ALTPFLWGFEEREKLMEFYERVSGARLHSAYVRPGGVAFDLPH----------------- 240
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LL+ I + +F +DE E ++T NRIWKQR VGIG V+ ++AL FTG
Sbjct: 241 --------GLLEDIFKWATQFSSRVDEIEEVVTGNRIWKQRTVGIGKVTAKQALDYSFTG 292
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ WDLRK QPY+ Y+ + FD+P+GKNGD YDRYL R++E R+S +II QC+
Sbjct: 293 VMLRGSGIPWDLRKTQPYDKYDEVEFDVPVGKNGDCYDRYLCRVQEFRESLRIIHQCLN- 351
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ G V ++NKI P R +MK +ME LIHHFKLF+EG+ VP GE YS +E PKGE
Sbjct: 352 -KMPLGAVKIDDNKIVPPPRASMKESMESLIHHFKLFSEGYSVPPGETYSAIEAPKGEMA 410
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG N+PYR IR+PGFAHL M+ HM++D V +IGT D+VFGE+DR
Sbjct: 411 VYLVSDGTNRPYRCSIRAPGFAHLAGADFMMRRHMLADAVAVIGTMDLVFGEVDR 465
>gi|83951741|ref|ZP_00960473.1| NADH dehydrogenase delta subunit [Roseovarius nubinhibens ISM]
gi|83836747|gb|EAP76044.1| NADH dehydrogenase delta subunit [Roseovarius nubinhibens ISM]
Length = 407
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 232/417 (55%), Positives = 301/417 (72%), Gaps = 28/417 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 17 KIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNLPY 76
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +AIEKL +++P RA IRV++ EI R+LNHL+ + + ++D+G
Sbjct: 77 FDRLDYVAPMNQEHAWCLAIEKLTGVEVPRRASLIRVLYSEIGRILNHLLNVTTQAMDVG 136
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE GAR+HAAY+RPGGV++DLPE
Sbjct: 137 ALTPPLWGFEEREKLMVFYERACGARLHAAYFRPGGVHQDLPE----------------- 179
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L+D IE + FP + + + LLT+NRI+KQR IGVV+ + L GF+G
Sbjct: 180 --------DLIDDIETWAKAFPNVLADIDGLLTENRIFKQRNADIGVVTEKDILDWGFSG 231
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG+ WDLR+ QPYE Y+ F +P+GKNGD YDRYL R+EEMRQS II Q I+
Sbjct: 232 VMVRGSGLAWDLRRAQPYECYDEFEFQVPVGKNGDCYDRYLCRMEEMRQSLHIIHQAIEK 291
Query: 579 LRS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
LR+ KG +++ KIT P R MK++ME LIHHFKL+TEGF+VP GE+Y+ VE PKGE
Sbjct: 292 LRAPDGKGDILA-RGKITPPKRGEMKTSMEALIHHFKLYTEGFHVPEGEVYAAVEAPKGE 350
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YLVSDG+NKPYR KIR+PGF HLQ++ + GH ++DV IIGT D+VFGEIDR
Sbjct: 351 FGVYLVSDGSNKPYRSKIRAPGFLHLQAMDHVAGGHQLADVAAIIGTMDVVFGEIDR 407
>gi|417860275|ref|ZP_12505331.1| NADH dehydrogenase subunit D [Agrobacterium tumefaciens F2]
gi|338823339|gb|EGP57307.1| NADH dehydrogenase subunit D [Agrobacterium tumefaciens F2]
Length = 396
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 226/416 (54%), Positives = 302/416 (72%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGP+HP+AHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 6 VRNFTINFGPEHPSAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +A+EKLL ++IP+R Q IRV++ EI R+L+H+M + + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAFALAVEKLLGLEIPMRGQLIRVLYSEIGRILSHIMNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M ++ F ERE L+ YE GARMH+AY RPGGV++DLP
Sbjct: 126 MTPPVWGFEEREKLMVFYERACGARMHSAYVRPGGVHQDLPP------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I + + F +D E LLTDNRI+KQR V IGVVS E A + GFTG
Sbjct: 168 -------ELVDDIGKWCDPFLTVLDNIEGLLTDNRIYKQRNVDIGVVSLEDAFAWGFTGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLR+ QPYE Y+ L FDIP+GKNGD YDRYL+R++EMR+S KI+KQC+ L
Sbjct: 221 MVRGSGAAWDLRRAQPYECYSDLEFDIPVGKNGDCYDRYLIRMQEMRESVKIMKQCVDLL 280
Query: 580 RSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
GPV S + K+ P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGEF
Sbjct: 281 SGKHRIGPVSSLDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+Y+V+DG+NKPYR KIR+PG+AHLQ++ + GH ++DV ++G+ DIVFGE+DR
Sbjct: 341 GVYVVADGSNKPYRCKIRAPGYAHLQAMDFLCKGHQLADVTAVLGSLDIVFGEVDR 396
>gi|359790561|ref|ZP_09293452.1| NADH dehydrogenase subunit D [Mesorhizobium alhagi CCNWXJ12-2]
gi|359253479|gb|EHK56605.1| NADH dehydrogenase subunit D [Mesorhizobium alhagi CCNWXJ12-2]
Length = 396
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 227/416 (54%), Positives = 302/416 (72%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 6 VRNFNINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEAKTYLQAIPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +A+E+LL I +P R Q IRV++ EI R+L+HL+ + + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAFSLAVERLLGIDVPRRGQIIRVLYSEIGRILSHLLNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SGARMHAAY+RPGGV++DLP+
Sbjct: 126 LTPPLWGFEEREKLMVFYERASGARMHAAYFRPGGVHQDLPQ------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L++ I + + F + + + LLT+NRI+KQR V IGVVS + A + GF+G
Sbjct: 168 -------RLVEDIGKWIDPFLQTVANLDELLTENRIFKQRNVDIGVVSLDDAWAWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLRK QPYE Y + FDIP+GKNGD YDRYL+R+EEMRQS KI++QC+ L
Sbjct: 221 MVRGSGAAWDLRKSQPYECYPEMEFDIPVGKNGDCYDRYLIRMEEMRQSAKIMRQCVNLL 280
Query: 580 --RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+ GPV + + K+ P R MK +ME LIHHFKL+TEG+ VP GE+Y+ VE PKGEF
Sbjct: 281 LSKDGAGPVSNLDGKVVPPNRAAMKRSMEALIHHFKLYTEGYRVPAGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG NKPYR K+R+PGFAHLQ++ + GHM++DV ++G+ DIVFGE+DR
Sbjct: 341 GVYLVSDGTNKPYRCKLRAPGFAHLQAMDFLCRGHMLADVSAVLGSIDIVFGEVDR 396
>gi|409436900|ref|ZP_11264059.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
(NDH-1, chain D) [Rhizobium mesoamericanum STM3625]
gi|408751374|emb|CCM75213.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
(NDH-1, chain D) [Rhizobium mesoamericanum STM3625]
Length = 406
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 226/416 (54%), Positives = 306/416 (73%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGP+HP+AHGVLRL+LEL+GE++ + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 16 VRNFTINFGPEHPSAHGVLRLVLELDGEIIERVDPHIGLLHRGTEKLIESKTYLQAVPYF 75
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +A+EK+L ++IPIR Q IRV++ EI R+L+H+M + + ++D+GA
Sbjct: 76 DRLDYVAPMNQEHAFALAVEKMLKLEIPIRGQLIRVLYSEIGRILSHIMNVTTQAMDVGA 135
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M ++ F ERE L+ YE GARMH+AY+RPGGV++D+P
Sbjct: 136 MTPPVWGFEEREKLMVFYERACGARMHSAYFRPGGVHQDIPP------------------ 177
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L++ I + + F K +D+ E LLTDNRI+KQR V IGVVS A S GF+G
Sbjct: 178 -------ELVEDIGKWCDPFLKVLDDIEGLLTDNRIFKQRNVDIGVVSLADAWSWGFSGV 230
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLR+ QPYE Y+ L FDIPIGKNGD YDRYL+R+ EMRQS +I+KQC++ L
Sbjct: 231 MVRGSGAAWDLRRSQPYECYSDLEFDIPIGKNGDCYDRYLIRMIEMRQSVRIMKQCVERL 290
Query: 580 --RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
S GPV S + K+ P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGEF
Sbjct: 291 MGSSLTGPVSSIDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEF 350
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+Y+V+DG+NKPYR KIR+PG+AHLQ++ + GHM++DV ++G+ DIVFGE+DR
Sbjct: 351 GVYVVADGSNKPYRCKIRAPGYAHLQAMDFLCKGHMLADVTAVLGSLDIVFGEVDR 406
>gi|433774175|ref|YP_007304642.1| NADH dehydrogenase I, D subunit [Mesorhizobium australicum WSM2073]
gi|433666190|gb|AGB45266.1| NADH dehydrogenase I, D subunit [Mesorhizobium australicum WSM2073]
Length = 395
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 227/415 (54%), Positives = 300/415 (72%), Gaps = 26/415 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 6 VRNFNINFGPQHPAAHGVLRLVLELDGEVVDRVDPHIGLLHRGTEKLIETKTYLQALPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +AIEKL+ + +P R Q IRV+F EI+R+L+HL+ + + ++D+GA
Sbjct: 66 DRLDYVAPMSQEHAWCLAIEKLMGLAVPRRGQLIRVLFSEISRILSHLLNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHAAY+RPGGV++DLP
Sbjct: 126 LTPPLWGFVEREKLMVFYERASGSRMHAAYFRPGGVHQDLPP------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+ + ++ + F K +D+ + LLTDNRI+K R V IG +S A + GF+G
Sbjct: 168 -------DLITDVGNWIDPFRKTVDDLDRLLTDNRIFKLRNVDIGQISQSDAWAWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLRK QPYE Y ++FDIP+G+NGD +DRYLVR+EEMRQS KI++QCI L
Sbjct: 221 MVRGSGAAWDLRKSQPYECYAEMDFDIPVGRNGDCFDRYLVRMEEMRQSAKIMRQCIDLL 280
Query: 580 RS-NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
S GPV +N+ K+ P R MK +ME LIHHFKL+TEGF VP GE+Y+ VE PKGEFG
Sbjct: 281 ASEGPGPVSNNDGKVVPPRRAAMKRSMEALIHHFKLYTEGFRVPAGEVYAAVEAPKGEFG 340
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLV+DG NKPYR K+R P FAHLQ++ + GHM++DV I+G+ DIV G++DR
Sbjct: 341 VYLVADGTNKPYRCKLRPPSFAHLQAMDLLCRGHMLADVTAILGSLDIVLGDVDR 395
>gi|326387459|ref|ZP_08209068.1| NADH dehydrogenase subunit D [Novosphingobium nitrogenifigens DSM
19370]
gi|326208115|gb|EGD58923.1| NADH dehydrogenase subunit D [Novosphingobium nitrogenifigens DSM
19370]
Length = 403
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 221/414 (53%), Positives = 302/414 (72%), Gaps = 26/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
I +Y +NFGPQHPAAHGVLR+++EL+GE++ + DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 16 ISNYTINFGPQHPAAHGVLRMVMELDGEIIERIDPHIGLLHRGTEKLIEYKTYLQALPYF 75
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDY S + E++YV+AIEKLLN+++P+RAQY+RV+F E+TR+ NH++ IGSH +D+GA
Sbjct: 76 DRLDYCSPLAMEYSYVLAIEKLLNVEVPLRAQYLRVLFAELTRICNHMLNIGSHVMDVGA 135
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M L+ F RED L +E SGARMH+A++RPGGV++D+P +
Sbjct: 136 MTPNLWLFEIREDCLTFFERASGARMHSAWFRPGGVHQDVPLKL---------------- 179
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L D + R P+ D+ +L+ DNRI+KQR V I +VS E AL+ GF+GP
Sbjct: 180 --------LTDIADWLDTRLPELFDDAMSLVVDNRIFKQRNVDIALVSKEDALAWGFSGP 231
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RG+G+ WD+RK QPY++Y+ ++F+IP+G N D YDR +VR+EE+RQS +I+KQC++ +
Sbjct: 232 MIRGAGIPWDIRKAQPYDVYDRMDFEIPVGTNSDCYDRMMVRVEEVRQSARIMKQCLEQM 291
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+GPV++++ K+ P R MKS+ME LIHHFKL+TEGF+VP GE+Y E PKGEFG+
Sbjct: 292 --PEGPVLTSDRKVAPPKRGEMKSSMESLIHHFKLYTEGFHVPAGEVYVATESPKGEFGV 349
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG NKPYR KIR F+HLQ++ M GHM+ D I+G D+VFGE DR
Sbjct: 350 YLVSDGTNKPYRCKIRPTAFSHLQAMDFMSKGHMLPDATAILGAIDVVFGECDR 403
>gi|163746200|ref|ZP_02153559.1| NADH dehydrogenase subunit D [Oceanibulbus indolifex HEL-45]
gi|161380945|gb|EDQ05355.1| NADH dehydrogenase subunit D [Oceanibulbus indolifex HEL-45]
Length = 414
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 238/420 (56%), Positives = 302/420 (71%), Gaps = 33/420 (7%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 23 KIRNFNINFGPQHPAAHGVLRLVLELDGEVVERCDPHIGLLHRGTEKLMESRTYLQNLPY 82
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +AIEKL +P RA IRV+F EI R+LNHL+ I + +LD+G
Sbjct: 83 FDRLDYVAPMNQEHAWCLAIEKLTGTMVPRRASLIRVLFCEIGRVLNHLLNITTQALDVG 142
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE GAR+HAAY+RPGGV++DLP
Sbjct: 143 ALTPPLWGFEERESLMIFYERACGARLHAAYFRPGGVHQDLPP----------------- 185
Query: 459 ILNENRQGSLLDFIE----DFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSM 514
+LLD IE F +F +IDE LLT+NRI+KQR V IG+V+ + L
Sbjct: 186 --------ALLDDIEAWSKQFLTKFMVDIDE---LLTENRIFKQRNVDIGIVTEQEILDY 234
Query: 515 GFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQ 574
GF+G M+RGSG+ WDLR+ QPYE Y+ +F IP+GKNGD +DRYL R+EEMRQS II+Q
Sbjct: 235 GFSGVMVRGSGLAWDLRRSQPYECYDEFDFQIPVGKNGDCFDRYLCRMEEMRQSTYIIQQ 294
Query: 575 CIKWLRSNKGPV-ISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHP 633
I+ LR+ +G I KIT P+R MK++ME LIHHFKL+TEGF+VP GE+Y VE P
Sbjct: 295 AIEKLRAPEGQGDILARGKITPPSRTAMKTDMESLIHHFKLYTEGFHVPEGEVYCAVEAP 354
Query: 634 KGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
KGEFG+YLV+DG+NKPYR KIR+PGF HLQ++ + +GH ++DV IIGT D+VFGEIDR
Sbjct: 355 KGEFGVYLVADGSNKPYRAKIRAPGFLHLQAMDHVATGHQLADVAAIIGTMDVVFGEIDR 414
>gi|296444797|ref|ZP_06886760.1| NADH dehydrogenase I, D subunit [Methylosinus trichosporium OB3b]
gi|296257745|gb|EFH04809.1| NADH dehydrogenase I, D subunit [Methylosinus trichosporium OB3b]
Length = 396
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 232/416 (55%), Positives = 295/416 (70%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ LNFGPQHPAAHGVLRLILEL+GEVV + DPH+G LHR TEKL E RTYLQ++PY
Sbjct: 6 LRNFNLNFGPQHPAAHGVLRLILELDGEVVERCDPHVGFLHRGTEKLMEARTYLQNVPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDY S M EHA+ + IE+LL +++P R Q IRV++ EI RLL+HL+ + S ++D+GA
Sbjct: 66 DRLDYCSPMNQEHAFCLGIERLLGVEVPRRGQLIRVLYAEIGRLLSHLLNVTSQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ + ERE L+ YE SGARMHA Y+RPGGV RDLP+
Sbjct: 126 LTPPLWGYEEREKLMVFYERASGARMHANYFRPGGVARDLPD------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L++ I F + F K D+ E L NRI+KQR IGV+S E A GF+G
Sbjct: 168 -------QLVEDIGAFCDPFLKVCDDLEELFIGNRIFKQRNADIGVISLEDAWKYGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLRK QPY+ Y + FDIPIGKNGD YDR ++R+EEMRQS I+KQC++ L
Sbjct: 221 MVRGSGAPWDLRKSQPYDCYEEMEFDIPIGKNGDCYDRAVIRMEEMRQSTSIMKQCVEKL 280
Query: 580 --RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
N+GPV + NNKI SP R MK +ME LIHHFKL+TEGF VP GE+Y+ VE PKGEF
Sbjct: 281 LKPENRGPVAAVNNKICSPPRAEMKRSMEALIHHFKLYTEGFKVPAGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG +KPYR KIR+PGFAHLQ++ + H+++DV I+G+ DIVFGE+DR
Sbjct: 341 GVYLVSDGGDKPYRCKIRAPGFAHLQAMDFLCKNHLLADVSAILGSLDIVFGEVDR 396
>gi|241518508|ref|YP_002979136.1| NADH dehydrogenase I, D subunit [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|424879122|ref|ZP_18302757.1| NADH dehydrogenase I, D subunit [Rhizobium leguminosarum bv.
trifolii WU95]
gi|240862921|gb|ACS60585.1| NADH dehydrogenase I, D subunit [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|392519793|gb|EIW44524.1| NADH dehydrogenase I, D subunit [Rhizobium leguminosarum bv.
trifolii WU95]
Length = 396
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 227/417 (54%), Positives = 303/417 (72%), Gaps = 27/417 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++++ LNFGPQHPAAHGVLRL+LEL GE+V + DPHIGLLHR TEKL E++TYLQ+LPY
Sbjct: 5 DVRNFHLNFGPQHPAAHGVLRLVLELNGEIVERIDPHIGLLHRGTEKLIEKKTYLQALPY 64
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHAY +AIEK+L +++P RAQ IRV++ EI+R+L+HL+ + + ++D+G
Sbjct: 65 FDRLDYVAPMSQEHAYCLAIEKMLGLEVPYRAQLIRVLYAEISRILSHLLNVTTQAMDVG 124
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE SG+RMHAAY+RPGGV++DLP
Sbjct: 125 ALTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDLPP----------------- 167
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L+ I ++ +FP+ I++ LLTDNRI+KQR V +G++S E A + GF+G
Sbjct: 168 --------KLVADIGEWCRKFPQVIEDIGGLLTDNRIFKQRNVDVGLISLEDAWAWGFSG 219
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
++RGSG WDLR+ PYE Y+ L FDIPIGKNGD YDRYL+R++EMR+S +I+ QC
Sbjct: 220 VLIRGSGAAWDLRRANPYECYSDLEFDIPIGKNGDCYDRYLIRMQEMRESVRIMSQCADL 279
Query: 579 L--RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
L ++ GPV SN+ K+ P R MK +ME LIHHFKL+TEGF VP GE Y+ VE PKGE
Sbjct: 280 LLGSASTGPVNSNDGKVVPPKRGEMKRSMEALIHHFKLYTEGFRVPKGEAYAAVEAPKGE 339
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YLV+DG N PYR KIR+PGF HLQ++ M GH ++DV ++G+ DIVFGE+DR
Sbjct: 340 FGVYLVADGTNAPYRCKIRAPGFTHLQAMDFMCRGHQLADVSAVLGSLDIVFGEVDR 396
>gi|15888601|ref|NP_354282.1| NADH ubiquinone oxidoreductase chain D [Agrobacterium fabrum str.
C58]
gi|335035093|ref|ZP_08528436.1| NADH dehydrogenase subunit D [Agrobacterium sp. ATCC 31749]
gi|218534381|sp|A9CJA9.1|NUOD_AGRT5 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|15156321|gb|AAK87067.1| NADH ubiquinone oxidoreductase chain D [Agrobacterium fabrum str.
C58]
gi|333793524|gb|EGL64878.1| NADH dehydrogenase subunit D [Agrobacterium sp. ATCC 31749]
Length = 396
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 226/416 (54%), Positives = 302/416 (72%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGP+HP+AHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 6 VRNFTINFGPEHPSAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +A+EKLL ++IP+R Q IRV++ EI R+L+H+M + + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAFALAVEKLLGLEIPMRGQLIRVLYSEIGRILSHIMNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M ++ F ERE L+ YE GARMH+AY RPGGV++DLP
Sbjct: 126 MTPPVWGFEEREKLMVFYERACGARMHSAYVRPGGVHQDLPP------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I + + F +D E LLTDNRI+KQR V IGVVS E A + GFTG
Sbjct: 168 -------ELVDDIGKWCDPFLTVLDNIEGLLTDNRIYKQRNVDIGVVSLEDAFAWGFTGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLR+ QPYE Y+ L FDIP+GKNGD YDRYL+R++EMR+S KI+KQC+ L
Sbjct: 221 MVRGSGAAWDLRRSQPYECYSDLEFDIPVGKNGDCYDRYLIRMQEMRESVKIMKQCVDRL 280
Query: 580 RSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
GPV S + K+ P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGEF
Sbjct: 281 SGKHRIGPVSSLDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+Y+V+DG+NKPYR KIR+PG+AHLQ++ + GH ++DV ++G+ DIVFGE+DR
Sbjct: 341 GVYVVADGSNKPYRCKIRAPGYAHLQAMDFLCKGHQLADVTAVLGSLDIVFGEVDR 396
>gi|319782984|ref|YP_004142460.1| NADH dehydrogenase I subunit D [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317168872|gb|ADV12410.1| NADH dehydrogenase I, D subunit [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 396
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 227/416 (54%), Positives = 308/416 (74%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TYLQ++PY+
Sbjct: 6 VRNFNINFGPQHPAAHGVLRLVLELDGEVVDRVDPHIGLLHRGTEKLIEAKTYLQAVPYL 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDY + M EHA+ +A E+LL I++P R Q IRV++ EI R+++H++ + + ++D+GA
Sbjct: 66 DRLDYCAPMNQEHAFALAAERLLGIEVPKRGQVIRVLYSEIGRIMSHILNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHAAY+RPGGV++DLP
Sbjct: 126 LTPPLWGFVEREKLMVFYERASGSRMHAAYFRPGGVHQDLP------------------- 166
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
RQ L++ I + + F K+ID+ + LLT NRI+KQR V IG+VS A + GF+G
Sbjct: 167 ----RQ--LVEDIGKWIDPFLKSIDDLDRLLTGNRIFKQRNVDIGIVSLADAWAWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLRK QPYE Y+ ++FDIPIGKNGD +DRYLVR+EEMRQS KI++QC+ L
Sbjct: 221 MVRGSGAAWDLRKSQPYECYSEMDFDIPIGKNGDCFDRYLVRMEEMRQSAKIMRQCVDLL 280
Query: 580 --RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+ + GPV + + K+ P R MK +ME LIHHFKL+TEG+ VP GE+Y+ VE PKGEF
Sbjct: 281 LGKESTGPVSNLDGKVVPPKRQAMKRSMEALIHHFKLYTEGYRVPAGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG+NKPYR K+R+PGFAHLQ++ + GHM++D+ ++G+ DIVFGE+DR
Sbjct: 341 GVYLVSDGSNKPYRCKLRAPGFAHLQAMDFLCRGHMLADITAVLGSLDIVFGEVDR 396
>gi|365895273|ref|ZP_09433394.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
(NDH-1, chain D) [Bradyrhizobium sp. STM 3843]
gi|365423992|emb|CCE05936.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
(NDH-1, chain D) [Bradyrhizobium sp. STM 3843]
Length = 398
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 231/416 (55%), Positives = 304/416 (73%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TY+Q+ PY
Sbjct: 8 LRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEAKTYMQATPYF 67
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +A EKLL I++P R Q IRV++ EI R+L+HL+ + + ++D+GA
Sbjct: 68 DRLDYVAPMNQEHAFCLAAEKLLGIEVPRRGQLIRVLYCEIGRILSHLLNVTTQAMDVGA 127
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHA Y+R GGV++DLP
Sbjct: 128 LTPPLWGFEEREKLMVFYERASGSRMHANYFRVGGVHQDLPS------------------ 169
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D IE + + F K +D+ + LLT NRI+KQR V IGVV+ + A + GF+G
Sbjct: 170 -------KLIDDIETWCDPFLKVVDDLDRLLTANRIFKQRNVDIGVVTLQDAWAWGFSGV 222
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLRK QPY+ Y + FDIPIGKNGD YDRYL+R+EEMRQS +I+KQCI L
Sbjct: 223 MVRGSGAAWDLRKAQPYDCYAEMEFDIPIGKNGDCYDRYLIRMEEMRQSVRIMKQCIAKL 282
Query: 580 RS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
R+ +GPV+ +NKI+ P R MK +ME LIHHFKL+TEG +VP GE+Y VE PKGEF
Sbjct: 283 RAPDGQGPVMITDNKISPPRRGEMKRSMEALIHHFKLYTEGVHVPAGEVYVAVEAPKGEF 342
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G++LVSDG+NKPY+ KIR+PGFAHLQS+ + GH+++DV I+G+ DIVFGE+DR
Sbjct: 343 GVFLVSDGSNKPYKCKIRAPGFAHLQSMDFICRGHLLADVSAILGSLDIVFGEVDR 398
>gi|331217620|ref|XP_003321488.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
[Puccinia graminis f. sp. tritici CRL 75-36-700-3]
gi|309300478|gb|EFP77069.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
[Puccinia graminis f. sp. tritici CRL 75-36-700-3]
Length = 482
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 232/414 (56%), Positives = 293/414 (70%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++ + +NFGPQHPAAHGVLR+ILE+ GE + +ADPHIGLLHR TEKL E + Y Q+LPY
Sbjct: 96 MRHFTVNFGPQHPAAHGVLRMILEMNGEEILRADPHIGLLHRGTEKLIEYKNYTQALPYF 155
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMM NE Y A+EKLLNI++P RA++IR MF EITR+LNHLM I +H++D+GA
Sbjct: 156 DRLDYVSMMTNELCYSRAVEKLLNIEVPDRAKWIRTMFGEITRILNHLMAILTHAMDVGA 215
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L++ YE VSGAR+HAAY RPGGV DLP
Sbjct: 216 LTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVAFDLPH------------------ 257
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD I + F +DE+E +LT+NRIWK+R +GIG VS AL+ GF+G
Sbjct: 258 -------GLLDDIYIWATAFSDRVDEFEEVLTENRIWKERTIGIGKVSVNDALNYGFSGV 310
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSGV WD+RK QPY+ Y+ + FD+P+GKNGD YDRYL R EE RQS +II QC+ +
Sbjct: 311 MLRGSGVPWDIRKSQPYDAYDQVEFDVPVGKNGDCYDRYLCRTEEFRQSLRIIHQCLNKM 370
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K+T P R MK +ME LIHHFKLF+EG+ VP GE YS +E PKGE G+
Sbjct: 371 PA--GQIKVDDYKLTPPPRATMKESMEALIHHFKLFSEGYNVPPGETYSAIEAPKGEMGV 428
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+N+PYR +IR+PGFAHL M H + D+V IIGT D+VFGE+DR
Sbjct: 429 YLVSDGSNRPYRCRIRAPGFAHLAGADFMSRHHFLPDMVAIIGTMDLVFGEVDR 482
>gi|126729552|ref|ZP_01745365.1| NADH dehydrogenase subunit D [Sagittula stellata E-37]
gi|126709671|gb|EBA08724.1| NADH dehydrogenase subunit D [Sagittula stellata E-37]
Length = 407
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 226/417 (54%), Positives = 302/417 (72%), Gaps = 28/417 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 17 KIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNLPY 76
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +AIE+L +++P RA IRV++ EI R+LNHL+ + + ++D+G
Sbjct: 77 FDRLDYVAPMNQEHAWCLAIERLTGVEVPRRASLIRVLYSEIGRVLNHLLNVTTQAMDVG 136
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE GAR+H+AY+RPGGV++DLP
Sbjct: 137 ALTPPLWGFEEREKLMIFYERACGARLHSAYFRPGGVHQDLPP----------------- 179
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L+D IE + FP +D+ + LLT+NRI+KQR IGVV+ + L GF+G
Sbjct: 180 --------KLIDDIEQWAKEFPAKLDDIDGLLTENRIFKQRNADIGVVTEQEILDWGFSG 231
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG+ WDLR+ QPYE Y+ +F IP+GKNGD YDRYL R+ EMR+S KII Q ++
Sbjct: 232 VMVRGSGLAWDLRRAQPYECYDEFDFKIPVGKNGDCYDRYLCRMAEMRESTKIILQAVEK 291
Query: 579 LRS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
LR+ +G V++ K+T P R MK++ME LIHHFKL+TEGF+VP GE+Y+ VE PKGE
Sbjct: 292 LRAPDGQGDVLA-RGKVTPPKRDEMKTSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGE 350
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YLV+DG NKPYR K+R+PG+ HLQ++ + SGH ++DV IIGT DIVFGE+DR
Sbjct: 351 FGVYLVADGTNKPYRAKLRAPGYLHLQAMDHVASGHQLADVAAIIGTMDIVFGEVDR 407
>gi|325292636|ref|YP_004278500.1| NADH dehydrogenase I subunit D [Agrobacterium sp. H13-3]
gi|418406789|ref|ZP_12980108.1| NADH dehydrogenase subunit D [Agrobacterium tumefaciens 5A]
gi|325060489|gb|ADY64180.1| NADH dehydrogenase I chain D [Agrobacterium sp. H13-3]
gi|358007282|gb|EHJ99605.1| NADH dehydrogenase subunit D [Agrobacterium tumefaciens 5A]
Length = 396
Score = 477 bits (1227), Expect = e-131, Method: Compositional matrix adjust.
Identities = 225/416 (54%), Positives = 302/416 (72%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGP+HP+AHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 6 VRNFTINFGPEHPSAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +A+EKLL ++IP+R Q IRV++ EI R+L+H+M + + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAFALAVEKLLGLEIPMRGQLIRVLYSEIGRILSHIMNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M ++ F ERE L+ YE GARMH+AY RPGGV++DLP
Sbjct: 126 MTPPVWGFEEREKLMVFYERACGARMHSAYVRPGGVHQDLPP------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L++ I + + F +D E LLTDNRI+KQR V IGVVS E A + GFTG
Sbjct: 168 -------ELVEDIGKWCDPFITVLDNIEGLLTDNRIYKQRNVDIGVVSLEDAFAWGFTGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLR+ QPYE Y+ L FDIP+GKNGD YDRYL+R++EMR+S KI+KQC+ L
Sbjct: 221 MVRGSGAAWDLRRAQPYECYSDLEFDIPVGKNGDCYDRYLIRMQEMRESVKIMKQCVDLL 280
Query: 580 RSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
GPV S + K+ P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGEF
Sbjct: 281 SGKHRIGPVSSLDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+Y+V+DG+NKPYR KIR+PG+AHLQ++ + GH ++DV ++G+ DIVFGE+DR
Sbjct: 341 GVYVVADGSNKPYRCKIRAPGYAHLQAMDFLCKGHQLADVTAVLGSLDIVFGEVDR 396
>gi|402772312|ref|YP_006591849.1| NADH-quinone oxidoreductase subunit D (NADH dehydrogenase I subunit
D) [Methylocystis sp. SC2]
gi|401774332|emb|CCJ07198.1| NADH-quinone oxidoreductase subunit D (NADH dehydrogenase I subunit
D) [Methylocystis sp. SC2]
Length = 406
Score = 477 bits (1227), Expect = e-131, Method: Compositional matrix adjust.
Identities = 230/416 (55%), Positives = 302/416 (72%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRLILEL+GEVV + DPH+G LHR TEKL E RTYLQ++PY
Sbjct: 16 LRNFNINFGPQHPAAHGVLRLILELDGEVVERVDPHVGFLHRGTEKLMEARTYLQNVPYF 75
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDY + M EHA+ +AIE+LL +++P R Q IRV++ EI RLL+HL+ + S ++D+GA
Sbjct: 76 DRLDYCAPMNQEHAFCLAIERLLGVEVPRRGQLIRVLYAEIGRLLSHLLNVTSQAMDVGA 135
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ + ERE L+ YE SGARMHA Y+RPGGV RDLP+
Sbjct: 136 LTPPLWGYEEREKLMVFYERASGARMHANYFRPGGVARDLPD------------------ 177
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L++ I F + F K +++ + L NRI+KQR V IGV+S E A GF+G
Sbjct: 178 -------QLVEDIGAFCDPFLKVVEDLDELFIGNRIFKQRNVDIGVISLEDAWKWGFSGV 230
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCI-KW 578
M+RGSG WDLRK QPYE Y + FDIP+GK+GD YDR ++R+EEMRQS I+KQC+ K
Sbjct: 231 MVRGSGAAWDLRKAQPYECYEEMEFDIPVGKHGDCYDRAVIRMEEMRQSTSIMKQCVEKL 290
Query: 579 LRS-NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+R+ N+GPV++ N+KIT P+R MK +ME LIHHFKLFTEGF+VP GE+Y+ VE PKGEF
Sbjct: 291 MRAENRGPVMAPNHKITPPSRGEMKRSMEALIHHFKLFTEGFHVPQGEVYAAVEAPKGEF 350
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG +KPYR KIR+PGFAHL ++ + HM++DV I+G+ DIVFGE+DR
Sbjct: 351 GVYLVSDGGDKPYRCKIRAPGFAHLSAMDFLCKNHMLADVSAILGSLDIVFGEVDR 406
>gi|357026742|ref|ZP_09088835.1| NADH dehydrogenase subunit D [Mesorhizobium amorphae CCNWGS0123]
gi|355541384|gb|EHH10567.1| NADH dehydrogenase subunit D [Mesorhizobium amorphae CCNWGS0123]
Length = 396
Score = 477 bits (1227), Expect = e-131, Method: Compositional matrix adjust.
Identities = 224/416 (53%), Positives = 304/416 (73%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TYLQ++PY+
Sbjct: 6 VRNFNINFGPQHPAAHGVLRLVLELDGEVVDRVDPHIGLLHRGTEKLIEHKTYLQAVPYL 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDY + M EHA+ +A+E+LL I++P R Q IRV++ E+ R+++H++ + + ++D+GA
Sbjct: 66 DRLDYCAPMNQEHAFALAVERLLGIEVPKRGQLIRVLYSEMGRIMSHILNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHAAY+RPGGV++DLP+
Sbjct: 126 LTPPLWGFVEREKLMVFYERASGSRMHAAYFRPGGVHQDLPQ------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L++ I + + F K+ID+ + LLT NRI+KQR V I VS A + GF+G
Sbjct: 168 -------KLVEDIGKWIDPFLKSIDDLDALLTGNRIFKQRNVDIATVSLADAWAWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLRK QPYE Y+ ++FDIPIGKNGD +DRYLVR+EEMRQS KI++QC+ L
Sbjct: 221 MVRGSGAAWDLRKSQPYECYSEMDFDIPIGKNGDCFDRYLVRMEEMRQSAKIMRQCVDLL 280
Query: 580 --RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+ GPV + + K+ P R MK +ME LIHHFKL+TEG+ VP GE+Y+ VE PKGEF
Sbjct: 281 LGKEGTGPVSNLDGKVVPPKRQAMKRSMEALIHHFKLYTEGYRVPAGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG NKPYR K+R+PGFAHLQ++ + GHM++DV ++G+ DIVFGE+DR
Sbjct: 341 GVYLVSDGTNKPYRCKLRAPGFAHLQAMDFLCRGHMLADVTAVLGSLDIVFGEVDR 396
>gi|441635044|ref|XP_004089888.1| PREDICTED: LOW QUALITY PROTEIN: NADH dehydrogenase [ubiquinone]
iron-sulfur protein 2, mitochondrial [Nomascus
leucogenys]
Length = 460
Score = 476 bits (1226), Expect = e-131, Method: Compositional matrix adjust.
Identities = 232/402 (57%), Positives = 295/402 (73%), Gaps = 27/402 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
+K+ LNFGPQHPAAHGVLRL++EL GE+VRK DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 77 VKNMTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 136
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMMCNE AY +A+EKLLNI+ P RAQ+IRV+F EITRLLNH+M + +H+LD+GA
Sbjct: 137 DRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGA 196
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M + F ERE + + YE VSGARMHAAY RPGGV++DLP
Sbjct: 197 MTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPL------------------ 238
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I F+ F +DE E LLT+NRIW+ R + IGVV+ E AL+ GF+G
Sbjct: 239 -------GLMDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGV 291
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG++WDLRK QPY++Y+ + FD+P+G GD YDRYL R+EEMRQS +II QC+
Sbjct: 292 MLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIITQCLN-- 349
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K++ P R MK++ME LIHHFKL+TEG+ VP G Y+ +E PKGEFG+
Sbjct: 350 KMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGV 409
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTII 681
YLVSDG+++PYR KI++PGFAHL L +M GHM++DVV II
Sbjct: 410 YLVSDGSSRPYRCKIKAPGFAHLAGLDKMSXGHMLADVVAII 451
>gi|323138148|ref|ZP_08073221.1| NADH dehydrogenase I, D subunit [Methylocystis sp. ATCC 49242]
gi|322396610|gb|EFX99138.1| NADH dehydrogenase I, D subunit [Methylocystis sp. ATCC 49242]
Length = 401
Score = 476 bits (1226), Expect = e-131, Method: Compositional matrix adjust.
Identities = 229/415 (55%), Positives = 301/415 (72%), Gaps = 27/415 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
+++ +NFGPQHPAAHGVLRLILEL+GEVV + DPH+G LHR TEKL E RTYLQ++PY D
Sbjct: 12 RNFNINFGPQHPAAHGVLRLILELDGEVVERVDPHVGFLHRGTEKLMESRTYLQNVPYFD 71
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDY + M EHA+ +AIE+LL++++P R Q IRV++ EI RLL+HL+ + S ++D+GA+
Sbjct: 72 RLDYCAPMNQEHAFCLAIERLLDVEVPRRGQLIRVLYAEIGRLLSHLLNVTSQAMDVGAL 131
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
L+ + ERE L+ YE GARMHA Y+RPGGV RDLP+
Sbjct: 132 TPPLWGYEEREKLMVFYERACGARMHANYFRPGGVARDLPD------------------- 172
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
L++ I F + F K +D+ + L NRI+KQR V IGV+S E A GF+G M
Sbjct: 173 ------QLVEDIGAFCDPFLKVVDDLDELFIGNRIFKQRNVDIGVISLEDAWKWGFSGVM 226
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCI-KWL 579
+RGSG WDLRK QPYE Y + FDIP+GK+GD YDR ++R+EEMRQS I+KQC+ K +
Sbjct: 227 VRGSGAAWDLRKAQPYECYEEMEFDIPVGKHGDCYDRAVIRMEEMRQSTYIMKQCVEKLM 286
Query: 580 RSN-KGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
R++ +GPV++ N+KIT P+R MK +ME LIHHFKLFTEGF+VP GE+Y+ VE PKGEFG
Sbjct: 287 RADGRGPVLTPNHKITQPSRQEMKRSMEALIHHFKLFTEGFHVPAGEVYAAVEAPKGEFG 346
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG +KPYR KIR+PGF HL ++ + GHM++DV I+G+ DIVFGE+DR
Sbjct: 347 VYLVSDGGDKPYRCKIRAPGFVHLSAMDFLCKGHMLADVSAILGSLDIVFGEVDR 401
>gi|420239078|ref|ZP_14743429.1| NADH dehydrogenase I, D subunit [Rhizobium sp. CF080]
gi|398082876|gb|EJL73615.1| NADH dehydrogenase I, D subunit [Rhizobium sp. CF080]
Length = 396
Score = 476 bits (1226), Expect = e-131, Method: Compositional matrix adjust.
Identities = 225/416 (54%), Positives = 303/416 (72%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 6 VRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +A+EK+L+I+IPIR Q IRV++ EI R+L+HL+ + + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAFALAVEKILDIQIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE GARMHAAY+RPGGV++DLP
Sbjct: 126 LTPPLWGFEEREKLMVFYERACGARMHAAYFRPGGVHQDLPP------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L++ I + + FP +D+ + LLT NRI+KQR V IGVV E A + GF+G
Sbjct: 168 -------ELVEDIGTWCDEFPAKLDDIDDLLTGNRIFKQRNVDIGVVKLEDAWAWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLR+ QPYE Y+ + FDIPIGKNGD YDRYL+R+ EMR+S KI+KQC+ L
Sbjct: 221 MVRGSGAAWDLRRAQPYECYSDMEFDIPIGKNGDCYDRYLIRMIEMRESVKIMKQCVNRL 280
Query: 580 --RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+ GP S + K+ P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGEF
Sbjct: 281 LGDAKTGPFSSADGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G++LV+DG+NKPYR KIR+PG+AHLQ++ + GH ++DV ++G+ DIVFGE+DR
Sbjct: 341 GVFLVADGSNKPYRCKIRAPGYAHLQAMDFICRGHQLADVSAVLGSLDIVFGEVDR 396
>gi|148555892|ref|YP_001263474.1| NADH dehydrogenase subunit D [Sphingomonas wittichii RW1]
gi|218534469|sp|A5VAM0.1|NUOD_SPHWW RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|148501082|gb|ABQ69336.1| NADH dehydrogenase I, D subunit [Sphingomonas wittichii RW1]
Length = 406
Score = 476 bits (1226), Expect = e-131, Method: Compositional matrix adjust.
Identities = 223/416 (53%), Positives = 305/416 (73%), Gaps = 26/416 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
+EI++Y +NFGPQHPAAHGVLR+++EL+GE+V + DPH+GLLHR TEKL E +TYLQ+LP
Sbjct: 17 VEIQNYTINFGPQHPAAHGVLRMVMELDGEIVERVDPHVGLLHRGTEKLIEYKTYLQALP 76
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y DRLDY S + EH+YV+AIEKLL +++P+RAQY+RV+F E+TR+ NH++ IGSH +D+
Sbjct: 77 YFDRLDYCSPLGMEHSYVLAIEKLLQLEVPLRAQYLRVLFAELTRICNHMLNIGSHVMDV 136
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GAM L+ F RED L+ +E SGARMHAA++RPGGV++D+P
Sbjct: 137 GAMTPNLWLFEIREDCLNFFERASGARMHAAWFRPGGVHQDVP----------------L 180
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
K+L + G LD R P+ ++ +L DNRI+KQR V +GVVS E AL+ GF+
Sbjct: 181 KLLTDI--GDWLD------TRLPRLFEDAVSLFADNRIFKQRNVDVGVVSKEDALAWGFS 232
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GPM+R +G+ WD+RK QPY++Y+ ++F+IP+G GD YDR +VRIEE+RQS +I+KQC+
Sbjct: 233 GPMIRAAGIPWDIRKSQPYDVYDRMDFEIPVGTKGDCYDRVMVRIEEVRQSARIMKQCLS 292
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+ +GP+ S + K+ P R MK +ME LIHHFKL+TEGF+VP G++Y E PKGEF
Sbjct: 293 EM--PEGPIASLDRKVVPPKRGEMKRSMEALIHHFKLYTEGFHVPAGDVYVATESPKGEF 350
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG+NKPYR KIR F+HLQ++ M+ GHM++D I+ D+VFGE DR
Sbjct: 351 GVYLVSDGSNKPYRCKIRPTAFSHLQAMDFMMKGHMLADTTAILSAIDVVFGECDR 406
>gi|427428437|ref|ZP_18918478.1| NADH-ubiquinone oxidoreductase chain D [Caenispirillum salinarum
AK4]
gi|425882170|gb|EKV30852.1| NADH-ubiquinone oxidoreductase chain D [Caenispirillum salinarum
AK4]
Length = 398
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 236/425 (55%), Positives = 297/425 (69%), Gaps = 33/425 (7%)
Query: 275 FPVIEIK------SYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAE 328
P EIK S +NFGPQHPAAHGVLRL+LEL GEVV +ADPH+GLLHR TEKL E
Sbjct: 1 MPEAEIKNLTLNTSTSVNFGPQHPAAHGVLRLVLELAGEVVERADPHVGLLHRGTEKLIE 60
Query: 329 QRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLM 388
+TYLQ+ PY DRLDY S + EH++V+A+EKLL I++P RA++IR ++ E+TR+ NH++
Sbjct: 61 YKTYLQAGPYFDRLDYCSPLNMEHSWVLAVEKLLGIEVPERAKWIRTLYAELTRIANHIL 120
Query: 389 WIGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKS 448
I S+++D+GAM +L+ F ERE L + E SGARMHA Y+RPGGV DLPE
Sbjct: 121 NITSYAMDVGAMTPMLWGFEERETLFEFTERASGARMHANYFRPGGVAWDLPE------- 173
Query: 449 SIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSP 508
L I + + + I + ET++T NRI+KQR V IGVV+P
Sbjct: 174 ------------------GLEADIRTWVPHYRQYIRDLETMITGNRIFKQRTVDIGVVTP 215
Query: 509 ERALSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQS 568
E+AL GFTGP LR G WDLRK QPY+ Y+ + FDIP+GK GD YDRYLVR+EEMRQS
Sbjct: 216 EQALDWGFTGPNLRACGYAWDLRKSQPYDAYDQVEFDIPVGKAGDCYDRYLVRVEEMRQS 275
Query: 569 NKIIKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYS 628
II+QC+ ++ GPV NNK+T P R MK +ME LIHHFKLFTEGF+VP GE Y+
Sbjct: 276 LDIIEQCLDKMKP--GPVRVENNKVTPPKRGEMKRSMEALIHHFKLFTEGFHVPAGETYT 333
Query: 629 CVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVF 688
E PKGEFG+YLV+DG N+PYR IRSPGF HLQ++ M GHM++D+ IIG+ D+VF
Sbjct: 334 VTEAPKGEFGVYLVADGTNRPYRCYIRSPGFVHLQAMDMMAKGHMLADIPAIIGSIDVVF 393
Query: 689 GEIDR 693
GEIDR
Sbjct: 394 GEIDR 398
>gi|13471404|ref|NP_102970.1| NADH dehydrogenase subunit D [Mesorhizobium loti MAFF303099]
gi|75543500|sp|Q98KQ8.1|NUOD_RHILO RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|14022146|dbj|BAB48756.1| NADH-ubiquinone dehydrogenase chain D 1 [Mesorhizobium loti
MAFF303099]
Length = 396
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 227/416 (54%), Positives = 307/416 (73%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TYLQ++PY+
Sbjct: 6 VRNFNINFGPQHPAAHGVLRLVLELDGEVVDRVDPHIGLLHRGTEKLIEAKTYLQAVPYL 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDY + M EHA+ +A E+LL I++P R Q IRV++ EI R+++H++ + + ++D+GA
Sbjct: 66 DRLDYCAPMNQEHAFALAAERLLGIEVPKRGQLIRVLYCEIGRIMSHILNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHAAY+RPGGV++DLP
Sbjct: 126 LTPPLWGFVEREKLMVFYERASGSRMHAAYFRPGGVHQDLP------------------- 166
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
RQ L++ I + + F K+ID+ + LLT NRI+KQR V IG+VS A + GF+G
Sbjct: 167 ----RQ--LVEDIGKWIDPFLKSIDDLDRLLTGNRIFKQRNVDIGIVSLADAWAWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLRK QPYE Y+ ++FDIPIGKNGD YDRYLVR+EEMRQS +I++QC+ L
Sbjct: 221 MVRGSGAAWDLRKSQPYECYSEMDFDIPIGKNGDCYDRYLVRMEEMRQSARIMRQCVDLL 280
Query: 580 --RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+ + GPV + + K+ P R MK +ME LIHHFKL+TEG+ VP GE+Y+ VE PKGEF
Sbjct: 281 LGKESTGPVSNLDGKVVPPKRAAMKRSMEALIHHFKLYTEGYRVPAGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG NKPYR K+R+PGFAHLQ++ + GH+++DV ++G+ DIVFGE+DR
Sbjct: 341 GVYLVSDGTNKPYRCKLRAPGFAHLQAMDFLCRGHLLADVTAVLGSLDIVFGEVDR 396
>gi|84686431|ref|ZP_01014325.1| NADH dehydrogenase delta subunit [Maritimibacter alkaliphilus
HTCC2654]
gi|84665614|gb|EAQ12090.1| NADH dehydrogenase delta subunit [Rhodobacterales bacterium
HTCC2654]
Length = 407
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 229/417 (54%), Positives = 302/417 (72%), Gaps = 28/417 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 17 QIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNLPY 76
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV M EHA+ + IEKL +++P RA IRV++ EI R+LNHL+ + + ++D+G
Sbjct: 77 FDRLDYVGTMNQEHAWCLVIEKLCGVEVPRRASLIRVLYSEIGRILNHLLNVTTQAMDVG 136
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE SGAR+HAAY+RPGGV++DLP
Sbjct: 137 ALTPPLWGFEEREKLMIFYERASGARLHAAYFRPGGVHQDLPP----------------- 179
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L+D IE + + FP +D+ + LLT+NR++KQR V IGV++ E L G++G
Sbjct: 180 --------KLIDDIEAWCHEFPAVLDDIDGLLTENRVFKQRNVDIGVITEEEILDWGYSG 231
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG WDLR+ QPYE Y+ +F + IGKNGD YDRYLVR+ EMR+S KI+ Q I+
Sbjct: 232 VMVRGSGFAWDLRRSQPYECYDEFDFKVCIGKNGDCYDRYLVRMAEMRESVKIMLQAIEK 291
Query: 579 LRS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
LR+ +G V++ K+T P R +MK++ME LIHHFKL+TEGF+VP GE+Y VE PKGE
Sbjct: 292 LRAPEGQGDVLA-RGKLTPPKRADMKTSMEALIHHFKLYTEGFHVPAGEVYCAVEAPKGE 350
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YLVSDG NKPYR K+R+PG+ HLQS+ + SGH ++DV IIGT DIVFGE+DR
Sbjct: 351 FGVYLVSDGTNKPYRAKLRAPGYLHLQSMDHVASGHQLADVAAIIGTMDIVFGEVDR 407
>gi|430003207|emb|CCF18992.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
(NDH-1, chain D) [Rhizobium sp.]
Length = 396
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 229/416 (55%), Positives = 303/416 (72%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 6 VRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIETKTYLQALPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHAY +A+EKLL I++PIR Q IRV++ EI R+L+HL+ + + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAYCLAVEKLLGIEVPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHAAY+RPGGV++DLP
Sbjct: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDLPP------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L++ I + + F +D+ + LLT NRI+KQR V IGVVS + + GF+G
Sbjct: 168 -------ELVEDIGAWCDPFLGTLDDIDDLLTGNRIFKQRNVDIGVVSLDDCWAWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLRK QPYE Y ++FDIPIGKNGD +DRYL+R+ EMR+S KI+KQC+ L
Sbjct: 221 MVRGSGAAWDLRKSQPYECYADMDFDIPIGKNGDCFDRYLIRMIEMRESVKIMKQCVNRL 280
Query: 580 RSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+ GPV S + K+ P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGEF
Sbjct: 281 LGDARVGPVSSLDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLV+DG NKPYR+KIR+PG+AHLQ++ M GH ++DV I+G+ DIVFGE+DR
Sbjct: 341 GVYLVADGTNKPYRLKIRAPGYAHLQAMDFMCRGHQLADVSAILGSLDIVFGEVDR 396
>gi|393718313|ref|ZP_10338240.1| NADH dehydrogenase subunit D [Sphingomonas echinoides ATCC 14820]
Length = 411
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 217/416 (52%), Positives = 302/416 (72%), Gaps = 26/416 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
+EI++Y +NFGPQHPAAHGVLRL++EL+GE+V + DPH+GLLHR TEKL E +TY Q+LP
Sbjct: 22 VEIQNYTINFGPQHPAAHGVLRLVMELDGEIVERVDPHVGLLHRGTEKLIEYKTYTQALP 81
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y DRLDY S +C EH+YV+A+EKLL++++P+RAQY+RV+F E+TR+ NH++ +GSH +D+
Sbjct: 82 YFDRLDYCSPLCMEHSYVLAVEKLLDLEVPLRAQYLRVLFAELTRISNHMLNLGSHVMDV 141
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GAM L+ F RED ++ +E VSGARMH+AY+RPGGV++D P +
Sbjct: 142 GAMTPNLWLFEIREDCMNFFERVSGARMHSAYFRPGGVHQDAPLKL-------------- 187
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
L D + R P+ ++ +L+ DNRI+KQR V I VS + A+ GF+
Sbjct: 188 ----------LTDIADWLDTRLPRLFEDAISLVADNRIFKQRNVDIATVSRDDAIKWGFS 237
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GPM+RGSG+ WDLRK QPY++Y ++F++P+G GD YDR++VR+EE+RQS +I+KQC++
Sbjct: 238 GPMIRGSGIAWDLRKAQPYDVYAKMDFEVPVGTRGDCYDRFMVRVEEVRQSARIMKQCLR 297
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+ +GP+ S + K+ P R MK +ME LIHHFKL+TEG++VP G++Y E PKGEF
Sbjct: 298 DM--PEGPIASLDRKVVPPKRAEMKRSMEALIHHFKLYTEGYHVPPGDVYVATESPKGEF 355
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLV+DG NKPYR KIR F+HLQ++ M GHM++D I+G DIVFGE DR
Sbjct: 356 GVYLVADGTNKPYRCKIRPTAFSHLQAMDFMAKGHMLADTTAILGAMDIVFGECDR 411
>gi|388856264|emb|CCF50073.1| probable NADH dehydrogenase (ubiquinone) 49K chain [Ustilago
hordei]
Length = 470
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 229/414 (55%), Positives = 290/414 (70%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++ + +NFGPQHPAAHGVLRLILEL GE + + DPHIGLLHR TEKL E +TY Q+LPY
Sbjct: 84 LRHFTVNFGPQHPAAHGVLRLILELNGEEILRTDPHIGLLHRGTEKLIEYKTYTQALPYF 143
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMM NE Y A+EKLLNI++P RA++IR MF E+TR+LNH M + SH +D+G
Sbjct: 144 DRLDYVSMMTNELCYSRAVEKLLNIEVPERAKWIRTMFGEMTRILNHCMAVLSHVMDVGG 203
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+AF ERE L++ YE VSGAR+HAAY RPGGV DLP
Sbjct: 204 LTPFLWAFEEREKLMEFYERVSGARLHAAYVRPGGVAYDLPP------------------ 245
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD I + +F +DE E ++T NRIWK R +GIG V+ ++AL GF+G
Sbjct: 246 -------GLLDDIYKWATQFGSRVDEIEEVVTGNRIWKGRTIGIGKVTAQQALDYGFSGV 298
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG+ WD+RK PY+ Y+ + FD+P+GKNGD YDRYL R+EE RQS +II+QC+ +
Sbjct: 299 MLRGSGIPWDIRKVAPYDAYDQVEFDVPVGKNGDCYDRYLCRVEEFRQSLRIIEQCLNKM 358
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + +++K+ P R MK +ME LIHHFKLF+EG+ VP GE YS +E PKGE G+
Sbjct: 359 PA--GQIKVDDHKLVPPPRATMKESMESLIHHFKLFSEGYAVPPGETYSAIEAPKGEMGV 416
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG N+PYR KIR+PGFAHL M H I D+V IIGT D+VFGE+DR
Sbjct: 417 YLVSDGTNRPYRCKIRAPGFAHLAGADFMARHHYIPDIVAIIGTLDLVFGEVDR 470
>gi|343425804|emb|CBQ69337.1| probable NADH dehydrogenase (ubiquinone) 49K chain [Sporisorium
reilianum SRZ2]
Length = 470
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 230/414 (55%), Positives = 289/414 (69%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++ + +NFGPQHPAAHGVLRLILEL GE + + DPH+GLLHR TEKL E +TY Q+LPY
Sbjct: 84 LRHFTVNFGPQHPAAHGVLRLILELNGEEILRTDPHVGLLHRGTEKLIEYKTYTQALPYF 143
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMM NE Y A+EKLLNI++P RA++IR MF EITR+LNH M + SH +D+G
Sbjct: 144 DRLDYVSMMTNELCYSRAVEKLLNIEVPERAKWIRTMFGEITRILNHCMAVLSHVMDVGG 203
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+AF ERE L++ YE VSGAR+HAAY RPGGV DLP
Sbjct: 204 LTPFLWAFEEREKLMEFYERVSGARLHAAYVRPGGVAYDLPP------------------ 245
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD I + +F IDE E ++T NRIWK R +GIG V+ + AL GF+G
Sbjct: 246 -------GLLDDIYKWATQFGSRIDEIEEVVTGNRIWKGRTIGIGKVTAQEALDYGFSGV 298
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG+ WD+RK PY+ Y+ + FD+P+GKNGD YDRYL R+EE RQS +II+QC+ +
Sbjct: 299 MLRGSGIPWDIRKVAPYDAYDQVEFDVPVGKNGDCYDRYLCRVEEFRQSLRIIEQCLNKM 358
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + +++K+ P R MK +ME LIHHFKLF+EG+ VP GE YS +E PKGE G+
Sbjct: 359 PA--GQIKVDDHKLVPPPRATMKESMESLIHHFKLFSEGYAVPPGETYSAIEAPKGEMGV 416
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG N+PYR KIR+PGFAHL M H I D+V IIGT D+VFGE+DR
Sbjct: 417 YLVSDGTNRPYRCKIRAPGFAHLAGADFMARHHYIPDMVAIIGTLDLVFGEVDR 470
>gi|332185669|ref|ZP_08387416.1| NADH dehydrogenase (quinone), D subunit [Sphingomonas sp. S17]
gi|332014027|gb|EGI56085.1| NADH dehydrogenase (quinone), D subunit [Sphingomonas sp. S17]
Length = 390
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 219/416 (52%), Positives = 301/416 (72%), Gaps = 26/416 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
+ I++Y +NFGPQHPAAHGVLRL++EL+GE+V + DPH+GLLHR TEKL E +TY Q+LP
Sbjct: 1 MSIQNYTINFGPQHPAAHGVLRLVMELDGEIVERVDPHVGLLHRGTEKLIEYKTYAQALP 60
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y DRLDY S MC EH+YV+A+EKLL++++P+RAQY+R F E+TR+ NH++ +GSH +D+
Sbjct: 61 YFDRLDYCSPMCMEHSYVLAVEKLLDLEVPLRAQYLRTFFAELTRISNHMLNLGSHVMDV 120
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GAM L+ F RED ++ YE SGARMHA Y+R GGV++D+P +
Sbjct: 121 GAMTPNLWMFEIREDCMNFYERASGARMHANYFRVGGVHQDVPLKL-------------- 166
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
L D + R P+ ++ L+++NRI+KQR V I VV+ E A+ GF+
Sbjct: 167 ----------LTDIADWLDTRLPQLFEDAIGLVSNNRIFKQRNVDIAVVNREDAIKWGFS 216
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GPM+RGSG+ WDLRK QPY+ Y+ ++FD+P+G +GD YDR++VR+EE+RQS +I+KQC+
Sbjct: 217 GPMIRGSGIPWDLRKSQPYDAYDKVDFDVPVGTSGDCYDRFMVRVEEVRQSARIMKQCLA 276
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+ +GPV++ + K+T P R MK +ME LIHHFKL+TEG++VP GE+Y E PKGEF
Sbjct: 277 QM--PEGPVLATDRKVTPPKRAEMKRSMEALIHHFKLYTEGYHVPAGEVYVATESPKGEF 334
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG+NKPYR KIR F+HLQ++ M GHM++D I+G DIVFGE DR
Sbjct: 335 GVYLVSDGSNKPYRCKIRPTAFSHLQAMEFMSKGHMLADTTAILGAMDIVFGECDR 390
>gi|392570895|gb|EIW64067.1| NADH-ubiquinone oxidoreductase [Trametes versicolor FP-101664 SS1]
Length = 480
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 230/423 (54%), Positives = 297/423 (70%), Gaps = 35/423 (8%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++ + +NFGPQHPAAHGVLRLILEL GE V +ADPH+GLLHR TEKL E +TY Q+LPY
Sbjct: 85 QLRHFTVNFGPQHPAAHGVLRLILELNGEEVLRADPHVGLLHRGTEKLIEYKTYTQALPY 144
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE Y +A+EKLLNI++P RA++IR +F E+TR+LNHLM + +H++D+G
Sbjct: 145 FDRLDYVSMMTNELCYSLAVEKLLNIEVPERAKWIRTLFGELTRVLNHLMAVLTHAMDVG 204
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGARMHAAY RPGGV DLP
Sbjct: 205 ALTPFLWGFEEREKLMEFYERVSGARMHAAYVRPGGVAFDLPH----------------- 247
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LL+ I + +F +DE E ++T NRIWK+R +GIGVV+ + AL F+G
Sbjct: 248 --------GLLEDIFKWATQFSSRVDEIEEVVTGNRIWKERTIGIGVVTAKEALDWSFSG 299
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ WD+RK PY+ Y+ + FDIP+GKNGD YDRYL R++E R+S +II QC+
Sbjct: 300 VMLRGSGIPWDIRKAAPYDKYDEVEFDIPVGKNGDCYDRYLCRVQEFRESLRIISQCLNK 359
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + G + ++ K+ P R +MK +ME LIHHFKLF+EG+ VP GE YS +E PKGE G
Sbjct: 360 IPT--GAIKVDDYKLVPPPRASMKESMESLIHHFKLFSEGYSVPPGETYSAIEAPKGEMG 417
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMI--------SGHMISDVVTIIGTQDIVFGE 690
+YLVSDG N+PYR KIR+PGFAHL M+ HMI+DVV IIGT D+VFGE
Sbjct: 418 VYLVSDGTNRPYRCKIRAPGFAHLAGADFMMRHVRCDHERAHMIADVVAIIGTMDLVFGE 477
Query: 691 IDR 693
+DR
Sbjct: 478 VDR 480
>gi|344299591|gb|EGW29944.1| hypothetical protein SPAPADRAFT_63571 [Spathaspora passalidarum
NRRL Y-27907]
Length = 478
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 229/415 (55%), Positives = 292/415 (70%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ + +NFGPQHPAAHGVLRLILEL GE + + DPH+GLLHR TEKL E +TY+Q+LPY
Sbjct: 91 KIRHFTINFGPQHPAAHGVLRLILELRGEEIVRGDPHVGLLHRGTEKLIESKTYMQALPY 150
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLN+++PIRA+YIR +F EITR+LNHLM I +H +D+G
Sbjct: 151 FDRLDYVSMMTNEQVFALAVEKLLNVEVPIRAKYIRTLFGEITRVLNHLMSILTHIMDVG 210
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+ L+ F ERE L++ YE VSGAR+HAAY RPGGV +DLP
Sbjct: 211 GLTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDLP------------------ 252
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E L TDNRIWK R V IG +S E AL+ +G
Sbjct: 253 -------AGLLDDIYMWATQFGDRIDEVEELCTDNRIWKDRTVDIGTLSAEDALNYSCSG 305
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLR SG+ +D+RK QPY+ Y+L++FDI +G NGD YDRYL+R+ E RQS +II QCI
Sbjct: 306 VMLRASGIPFDIRKSQPYDAYDLVDFDIAVGLNGDCYDRYLIRMAEFRQSLRIIFQCIND 365
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ +GPV + KI+ PAR MK +ME LIHHF +FT+GF VP GE Y+ +E PKGE
Sbjct: 366 I--PEGPVKVEDYKISPPARSAMKEDMEALIHHFLVFTKGFAVPQGETYTAIEAPKGEMA 423
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDG +PYR KIR+PGFAHL + M GH+++D V IIGT D+VFGE+DR
Sbjct: 424 VYVVSDGTERPYRCKIRAPGFAHLGAFDHMARGHLLADAVAIIGTMDLVFGEVDR 478
>gi|426200969|gb|EKV50892.1| hypothetical protein AGABI2DRAFT_189224, partial [Agaricus bisporus
var. bisporus H97]
Length = 456
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 226/415 (54%), Positives = 294/415 (70%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++ + +NFGPQHPAAHGVLR+ILEL GE + +ADPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 69 KMRHFTVNFGPQHPAAHGVLRMILELSGEEILRADPHIGLLHRGTEKLIEYKTYLQALPY 128
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE Y +A+EKLLNI++P RAQ+IR +F EITR+LNHLM + +H +D+G
Sbjct: 129 FDRLDYVSMMTNELCYSLAVEKLLNIEVPERAQWIRTLFGEITRILNHLMALLTHVMDVG 188
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+ L+ F ERE L++ YE VSGAR+HAAY RPGGV DLP
Sbjct: 189 GLTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVAFDLPH----------------- 231
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F +DE E ++T NRIWK+R +G+G+V+ ++AL F+G
Sbjct: 232 --------GLLDDIFKWATQFGSRVDEIEEVVTGNRIWKERTIGVGIVTAKQALDYSFSG 283
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WDLRK PY+ Y + FD+P+G+NGD YDRYL R++EMR+S +II QC+
Sbjct: 284 VMLRGSGVAWDLRKVAPYDKYAEVEFDVPVGQNGDCYDRYLCRVQEMRESIRIISQCLN- 342
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + G V +++K+ P R MK +ME LIHHFK+F+EG+ VP GE Y +E PKGE
Sbjct: 343 -KISPGAVKVDDHKLVPPPRAAMKESMEALIHHFKIFSEGYSVPPGETYCAIEAPKGEMA 401
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG N+PYR IR+PGFAHL M+ HM++DVV IIGT D+VFGE+DR
Sbjct: 402 VYLVSDGTNRPYRCSIRAPGFAHLAGSDFMMRSHMLADVVAIIGTMDLVFGEVDR 456
>gi|302677172|ref|XP_003028269.1| hypothetical protein SCHCODRAFT_83235 [Schizophyllum commune H4-8]
gi|300101957|gb|EFI93366.1| hypothetical protein SCHCODRAFT_83235 [Schizophyllum commune H4-8]
Length = 387
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 228/414 (55%), Positives = 293/414 (70%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++ + +NFGPQHPAAHGVLR+ILEL GE V +ADPHIGLLHR TEKL E +TY Q+LPY
Sbjct: 1 MRHFTVNFGPQHPAAHGVLRMILELNGEEVLRADPHIGLLHRGTEKLIEFKTYTQALPYF 60
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMM NE Y MA+EKLLNI++P RA++IR +F EITR+LNHLM + +H++D+GA
Sbjct: 61 DRLDYVSMMTNELCYSMAVEKLLNIEVPARAKWIRTLFGEITRILNHLMAVLTHAMDVGA 120
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L++ YE VSGAR+HAAY RPGGV DLP
Sbjct: 121 LTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVAFDLPH------------------ 162
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD I + +F +DE E ++T NRIWKQR + +G V+ E A F+G
Sbjct: 163 -------GLLDDIFKWATQFSSRVDEVEEVVTGNRIWKQRTINVGRVTAEDAQRFSFSGV 215
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSGV WDLRK PY+ Y+ + FDIP+GKNGD YDRYL R++EMR+S +II QC+ +
Sbjct: 216 MLRGSGVPWDLRKVSPYDAYDQVEFDIPVGKNGDCYDRYLCRVQEMRESLRIISQCLNKM 275
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G +++K+ P R +MK +ME LIHHFKLF+EG+ VP GE YS +E PKGE G+
Sbjct: 276 PT--GAYKVDDHKLVPPPRASMKESMESLIHHFKLFSEGYSVPPGETYSAIEAPKGEMGV 333
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+N+PYR IR+PGFAHL ++ HM++D V +IGT D+VFGE+DR
Sbjct: 334 YLVSDGSNRPYRCSIRAPGFAHLAGSDFILRNHMLADAVAVIGTMDLVFGEVDR 387
>gi|114707371|ref|ZP_01440268.1| NADH dehydrogenase subunit D [Fulvimarina pelagi HTCC2506]
gi|114537252|gb|EAU40379.1| NADH dehydrogenase subunit D [Fulvimarina pelagi HTCC2506]
Length = 396
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 224/418 (53%), Positives = 307/418 (73%), Gaps = 27/418 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
I+++++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPH+GLLHR TEKL E +TYLQ++P
Sbjct: 4 IDVRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHVGLLHRGTEKLIEHKTYLQAIP 63
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y DRLDYVS M EHA+ +AIE+L ++ +P R Q IRV++ EI R+L+HL+ + + ++D+
Sbjct: 64 YFDRLDYVSPMNQEHAFCLAIERLADVDVPKRGQLIRVLYCEIGRILSHLLNVTTQAMDV 123
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GA+ L+ F ERE L+ YE SGAR+H++Y+RPGGV++D+ +
Sbjct: 124 GALTPPLWGFEEREKLMVFYERASGARLHSSYFRPGGVHQDIDQ---------------- 167
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
L+D I ++ + F K D+ E LLTDNRI+KQR V IGVV+ + A +MGF+
Sbjct: 168 ---------KLIDDIGEWCDPFLKVCDDLEGLLTDNRIFKQRNVDIGVVNLDDAWAMGFS 218
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
G M+RGSG WDLRK QPYE Y+ + FDIP+GKNGD YDRYL+R+ EMR++ +I+KQCI+
Sbjct: 219 GVMVRGSGAAWDLRKSQPYECYDEMEFDIPVGKNGDCYDRYLIRMVEMREAVRIMKQCIE 278
Query: 578 WLRSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
L + GPV + K+ P R MK +ME LIHHFKL+TEGF++P GE+Y+ VE PKG
Sbjct: 279 RLSGEEKTGPVSAPMGKVVPPKRPEMKRSMEALIHHFKLYTEGFHLPEGEVYAAVEAPKG 338
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
EFG+YLV+DG NKP+R KI++PGFAHLQ++ M GH+++DV I+GT DIVFGE+DR
Sbjct: 339 EFGVYLVADGTNKPHRCKIKAPGFAHLQAMDVMCKGHLLADVSAILGTLDIVFGEVDR 396
>gi|339021753|ref|ZP_08645745.1| NADH-quinone oxidoreductase chain D [Acetobacter tropicalis NBRC
101654]
gi|338751249|dbj|GAA09049.1| NADH-quinone oxidoreductase chain D [Acetobacter tropicalis NBRC
101654]
Length = 427
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 230/417 (55%), Positives = 298/417 (71%), Gaps = 27/417 (6%)
Query: 277 VIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSL 336
+EI S+ LNFGPQHP+AHGVLRL+LE+EGEVV +A PHIGLLHR TEKL E +TY ++L
Sbjct: 38 TVEIDSHALNFGPQHPSAHGVLRLVLEMEGEVVARAVPHIGLLHRGTEKLIEYKTYHKAL 97
Query: 337 PYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLD 396
PY DRLDYVS MC E A+ +A EKLL I IP RA+++RVMF EITR+LNH++ I + LD
Sbjct: 98 PYFDRLDYVSPMCEEQAFALATEKLLGIDIPERAKWLRVMFAEITRILNHILNITAMGLD 157
Query: 397 IGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKA 456
GA+ L+ + ERE LL+ YEA SGAR HA Y+RPGGV RD+P
Sbjct: 158 CGAVTPALWGYEEREKLLEFYEAASGARFHANYFRPGGVARDIP---------------- 201
Query: 457 TKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGF 516
L D I + FP ID+ E LLT+NRIWKQR VGIG+ + E+AL+ GF
Sbjct: 202 ---------AELEDRIGAWAKEFPAWIDDLEGLLTENRIWKQRTVGIGIFTTEQALAWGF 252
Query: 517 TGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCI 576
+GP LR SGV WDLR+ QPY+ Y+ ++F +P+ + GD YDRYLVR+EEMR+S KII+QC+
Sbjct: 253 SGPCLRASGVPWDLRRSQPYDNYHKVDFKVPVTRQGDCYDRYLVRMEEMRESVKIIEQCL 312
Query: 577 KWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
++ G V + K T P R +MK +ME LIHHFKLF+EG++VP G Y+ VE PKGE
Sbjct: 313 AQIQP--GDVKVQDPKFTPPRRADMKRSMEALIHHFKLFSEGYHVPPGATYTAVESPKGE 370
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YLV+DG+N+PYR KIR GF+HLQ++ E+ M++D+V +IG+ D+VFGE+DR
Sbjct: 371 FGVYLVADGSNRPYRCKIRPTGFSHLQAIDELSRRAMLADMVAVIGSLDLVFGEVDR 427
>gi|89053664|ref|YP_509115.1| NADH dehydrogenase subunit D [Jannaschia sp. CCS1]
gi|122499241|sp|Q28T72.1|NUOD_JANSC RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|88863213|gb|ABD54090.1| NADH dehydrogenase subunit D [Jannaschia sp. CCS1]
Length = 412
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 225/415 (54%), Positives = 302/415 (72%), Gaps = 26/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ LNFGPQHPAAHGVLRL+LEL+GE+ + DPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 24 KIRNFNLNFGPQHPAAHGVLRLVLELDGEICERCDPHIGLLHRGTEKLMESRTYLQNLPY 83
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV M EHA+ +AIE++ +P RAQ IRV++ EI R+LNHL+ + + +LD+G
Sbjct: 84 FDRLDYVGTMNQEHAWCLAIERMTGTDVPRRAQLIRVLYCEIGRILNHLLNVTTQALDVG 143
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE SGAR+HAAY+RPGGV++DLP
Sbjct: 144 ALTPPLWGFEEREKLMIFYERASGARLHAAYFRPGGVHQDLPP----------------- 186
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L++ I+ + + FP+ +D+ + LL++NRI+KQR V IGVV+ E + GF+G
Sbjct: 187 --------ELIEDIDTWAHEFPQMLDDIDGLLSENRIFKQRNVDIGVVTEEDIQNWGFSG 238
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG WDLR+ QPYE Y+ F IP+GKNGD YDRYL R+ EMR+S KII Q +
Sbjct: 239 VMVRGSGFAWDLRRAQPYECYDEFEFQIPVGKNGDCYDRYLCRMAEMRESTKIIHQACEK 298
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+ G ++S K++ P+R +MK++ME LIHHFKL+TEGF+VP GEIY+CVE PKGEFG
Sbjct: 299 LRNEPGEIMS-RGKMSPPSRGDMKTSMEALIHHFKLYTEGFHVPEGEIYACVEAPKGEFG 357
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++LV+DG NKPYR K+R+PGFAHLQ++ + GH ++DV ++G+ DIVFGE+DR
Sbjct: 358 VFLVADGTNKPYRAKLRAPGFAHLQAMDYLCKGHQLADVSAVLGSLDIVFGEVDR 412
>gi|407798869|ref|ZP_11145772.1| NADH dehydrogenase I, D subunit [Oceaniovalibus guishaninsula
JLT2003]
gi|407059217|gb|EKE45150.1| NADH dehydrogenase I, D subunit [Oceaniovalibus guishaninsula
JLT2003]
Length = 412
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 225/414 (54%), Positives = 299/414 (72%), Gaps = 26/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
I+++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E RTYLQ+LPY+
Sbjct: 25 IRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYL 84
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +AIE+L + +P R Q IRV++ EI R+L+HL+ + + ++D+GA
Sbjct: 85 DRLDYVAPMNQEHAWCLAIERLTDTPVPRRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 144
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE GAR+HAAY+RPGGV++DLP
Sbjct: 145 LTPPLWGFEEREKLMIFYERACGARLHAAYFRPGGVHQDLPP------------------ 186
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L++ I+ + FPK +D+ + LLT+NRI+KQR V IGVVSP+ A GF+G
Sbjct: 187 -------DLIEDIDAWAVEFPKVLDDIDGLLTENRIFKQRNVDIGVVSPQEAQDWGFSGV 239
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG+ WDLR+ QPYE Y+ F IP+G+NGD +DRYLVR+ EMR+S II+Q L
Sbjct: 240 MVRGSGMAWDLRRAQPYECYDEFAFQIPVGQNGDCFDRYLVRMAEMRESTSIIRQACAKL 299
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
R+ GPV KI P R +MK++ME LIHHFKL+TEGF+VP GEIY+ VE PKGEFG+
Sbjct: 300 RAEPGPV-QTKGKIAPPRRGDMKTSMEALIHHFKLYTEGFHVPEGEIYAAVEAPKGEFGV 358
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
Y+V+DG N+PYR K+R+PG+ HLQ++ + GH ++DV IIGT D+VFGEIDR
Sbjct: 359 YIVADGTNRPYRAKLRAPGYLHLQAMDHISKGHQLADVAAIIGTMDVVFGEIDR 412
>gi|15965020|ref|NP_385373.1| NADH dehydrogenase subunit D [Sinorhizobium meliloti 1021]
gi|334315810|ref|YP_004548429.1| NAD(P)H-quinone oxidoreductase subunit H [Sinorhizobium meliloti
AK83]
gi|384528979|ref|YP_005713067.1| NAD(P)H-quinone oxidoreductase subunit H [Sinorhizobium meliloti
BL225C]
gi|384536741|ref|YP_005720826.1| probabable NADH-quinone oxidoreductase subunit D 1 [Sinorhizobium
meliloti SM11]
gi|407720211|ref|YP_006839873.1| NADH-quinone oxidoreductase subunit D 1 [Sinorhizobium meliloti
Rm41]
gi|418402647|ref|ZP_12976155.1| NADH dehydrogenase subunit D [Sinorhizobium meliloti CCNWSX0020]
gi|433613041|ref|YP_007189839.1| NADH dehydrogenase I, D subunit [Sinorhizobium meliloti GR4]
gi|7387955|sp|P56907.1|NUOD1_RHIME RecName: Full=NADH-quinone oxidoreductase subunit D 1; AltName:
Full=NADH dehydrogenase I subunit D 1; AltName:
Full=NDH-1 subunit D 1
gi|5650737|emb|CAB51623.1| nuoD1 [Sinorhizobium meliloti]
gi|15074199|emb|CAC45846.1| Probable NADH-quinone oxidoreductase subunit D 1 [Sinorhizobium
meliloti 1021]
gi|333811155|gb|AEG03824.1| NAD(P)H-quinone oxidoreductase subunit H [Sinorhizobium meliloti
BL225C]
gi|334094804|gb|AEG52815.1| NAD(P)H-quinone oxidoreductase subunit H [Sinorhizobium meliloti
AK83]
gi|336033633|gb|AEH79565.1| probabable NADH-quinone oxidoreductase subunit D 1 [Sinorhizobium
meliloti SM11]
gi|359503388|gb|EHK75942.1| NADH dehydrogenase subunit D [Sinorhizobium meliloti CCNWSX0020]
gi|407318443|emb|CCM67047.1| NADH-quinone oxidoreductase subunit D 1 [Sinorhizobium meliloti
Rm41]
gi|429551231|gb|AGA06240.1| NADH dehydrogenase I, D subunit [Sinorhizobium meliloti GR4]
Length = 396
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 226/416 (54%), Positives = 302/416 (72%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 6 VRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIEAKTYLQAIPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +A+E+L ++PIR Q IRV++ EI R+L+HL+ + + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAFALAVERLTGTQVPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE GARMHAAY+RPGGV++DLP
Sbjct: 126 LTPPLWGFEEREKLMVFYERACGARMHAAYFRPGGVHQDLPH------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L++ I ++ + F K +D+ + LLT NRI+KQR V IGVVS E A + GF+G
Sbjct: 168 -------QLVEDIGNWIDPFLKTVDDIDELLTGNRIFKQRNVDIGVVSLEDAWAWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLR+ QPYE Y+ L FDIPIGKNGD +DRYL+R+ EMRQS +I++QC+ L
Sbjct: 221 MVRGSGAAWDLRRSQPYECYSDLEFDIPIGKNGDCFDRYLIRMIEMRQSARIMRQCVDRL 280
Query: 580 RSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+ GPV S + KI P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGEF
Sbjct: 281 LGDAKIGPVSSLDGKIVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG NKPYR KIR+PG+AHLQ++ + GH ++DV ++G+ DIVFGE+DR
Sbjct: 341 GVYLVSDGTNKPYRCKIRAPGYAHLQAMDFLCRGHQLADVSAVLGSLDIVFGEVDR 396
>gi|334142127|ref|YP_004535334.1| NADH dehydrogenase I subunit D [Novosphingobium sp. PP1Y]
gi|333940158|emb|CCA93516.1| NADH dehydrogenase I subunit D [Novosphingobium sp. PP1Y]
Length = 403
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 220/414 (53%), Positives = 301/414 (72%), Gaps = 26/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
I +Y +NFGPQHPAAHGVLR+++EL+GEV+ + DPH+GLLHR TEKL E +TYLQ+LPY
Sbjct: 16 ISNYTINFGPQHPAAHGVLRMVMELDGEVIERIDPHVGLLHRGTEKLIENKTYLQALPYF 75
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDY S + EH+YV+AIEKLLN+++P+RAQY+RV+F E+TR+ NH++ IGSH +D+GA
Sbjct: 76 DRLDYCSPLGMEHSYVLAIEKLLNLEVPLRAQYLRVLFAELTRICNHMLNIGSHVMDVGA 135
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M L+ F RED L+ +E SGARMH+A++RPGGV++D+P +
Sbjct: 136 MTPNLWLFEIREDCLNFFERASGARMHSAWFRPGGVHQDVPLKL---------------- 179
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L D + R P ++ +L+ DNRI+KQR V I +VS E AL+ GF+GP
Sbjct: 180 --------LTDIADWLDTRLPTLFEDAMSLVVDNRIFKQRNVDIALVSREDALAWGFSGP 231
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+R +G+ WD+RK QPY++Y+ ++F+IP+G N D YDR++VR+EE+RQS +I+KQC+ +
Sbjct: 232 MIRAAGIPWDIRKSQPYDVYDRMDFEIPVGTNSDCYDRFMVRVEEVRQSARIMKQCLAEM 291
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+GPV++ + K+ P R MKS+ME LIHHFKL+TEGF+VP GE+Y E PKGEFG+
Sbjct: 292 --PEGPVMTADRKVGPPKRGEMKSSMESLIHHFKLYTEGFHVPAGEVYVATESPKGEFGV 349
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+NKPYR KIR F+HLQ++ M GHM+ D I+G D+VFGE DR
Sbjct: 350 YLVSDGSNKPYRCKIRPTAFSHLQAMDFMSKGHMLPDATAILGAIDVVFGECDR 403
>gi|359401536|ref|ZP_09194504.1| NADH dehydrogenase I subunit D [Novosphingobium pentaromativorans
US6-1]
gi|357597211|gb|EHJ58961.1| NADH dehydrogenase I subunit D [Novosphingobium pentaromativorans
US6-1]
Length = 401
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 220/414 (53%), Positives = 301/414 (72%), Gaps = 26/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
I +Y +NFGPQHPAAHGVLR+++EL+GEV+ + DPH+GLLHR TEKL E +TYLQ+LPY
Sbjct: 14 ISNYTINFGPQHPAAHGVLRMVMELDGEVIERIDPHVGLLHRGTEKLIENKTYLQALPYF 73
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDY S + EH+YV+AIEKLLN+++P+RAQY+RV+F E+TR+ NH++ IGSH +D+GA
Sbjct: 74 DRLDYCSPLGMEHSYVLAIEKLLNLEVPLRAQYLRVLFAELTRICNHMLNIGSHVMDVGA 133
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M L+ F RED L+ +E SGARMH+A++RPGGV++D+P +
Sbjct: 134 MTPNLWLFEIREDCLNFFERASGARMHSAWFRPGGVHQDVPLKL---------------- 177
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L D + R P ++ +L+ DNRI+KQR V I +VS E AL+ GF+GP
Sbjct: 178 --------LTDIADWLDTRLPTLFEDAMSLVVDNRIFKQRNVDIALVSREDALAWGFSGP 229
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+R +G+ WD+RK QPY++Y+ ++F+IP+G N D YDR++VR+EE+RQS +I+KQC+ +
Sbjct: 230 MIRAAGIPWDIRKSQPYDVYDRMDFEIPVGTNSDCYDRFMVRVEEVRQSARIMKQCLAEM 289
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+GPV++ + K+ P R MKS+ME LIHHFKL+TEGF+VP GE+Y E PKGEFG+
Sbjct: 290 --PEGPVMTADRKVGPPKRGEMKSSMESLIHHFKLYTEGFHVPAGEVYVATESPKGEFGV 347
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+NKPYR KIR F+HLQ++ M GHM+ D I+G D+VFGE DR
Sbjct: 348 YLVSDGSNKPYRCKIRPTAFSHLQAMDFMSKGHMLPDATAILGAIDVVFGECDR 401
>gi|17555284|ref|NP_498423.1| Protein NDUF-2.2 [Caenorhabditis elegans]
gi|351047528|emb|CCD63209.1| Protein NDUF-2.2 [Caenorhabditis elegans]
Length = 474
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 232/409 (56%), Positives = 289/409 (70%), Gaps = 27/409 (6%)
Query: 285 LNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDY 344
LNFGPQHPAAHGVLRL+L+LEGEV+ KA PHIGLLHRATEKL E +TY Q+LPY DRLDY
Sbjct: 93 LNFGPQHPAAHGVLRLVLKLEGEVIIKAIPHIGLLHRATEKLIEHKTYTQALPYFDRLDY 152
Query: 345 VSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLL 404
VSMMCNE A+ +AIEKLL I +P RA+YIR++F E+TR+ NH+M I +H+LD+GAM
Sbjct: 153 VSMMCNEQAFSLAIEKLLGIDVPPRAKYIRILFGELTRIQNHIMGITTHALDVGAMTPFF 212
Query: 405 YAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENR 464
+ F ERE L + E VSGARMHA Y RPGGV DLP
Sbjct: 213 WMFEEREKLFEFSERVSGARMHANYVRPGGVAWDLPV----------------------- 249
Query: 465 QGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGS 524
L+D I D+ +FP IDE E +LT+NRIWK R V IG+VS AL+ GF+G M+RGS
Sbjct: 250 --GLMDDIYDWAVKFPARIDELEDMLTENRIWKARTVDIGLVSASDALNWGFSGVMVRGS 307
Query: 525 GVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKG 584
G+K D+RK +PY+ Y + FD+PIG GD YDRYL R+EEMRQS I+ QC+ + + G
Sbjct: 308 GIKQDVRKTEPYDAYADMEFDVPIGTKGDCYDRYLCRVEEMRQSLNIVHQCLNKMPT--G 365
Query: 585 PVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSD 644
+ S+++K+ P R MK NME LIHHFK FTEGF VP G Y +E PKGEFG+YLV+D
Sbjct: 366 EIKSDDHKVVPPKRAEMKENMESLIHHFKFFTEGFQVPPGATYVPIEAPKGEFGVYLVAD 425
Query: 645 GANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G KPYR IR+PGFAHL ++ ++ +I+D+V +IGT DIVFGE+DR
Sbjct: 426 GTGKPYRCFIRAPGFAHLAAIHDVCYMSLIADIVAVIGTMDIVFGEVDR 474
>gi|114569908|ref|YP_756588.1| NADH dehydrogenase subunit D [Maricaulis maris MCS10]
gi|122316122|sp|Q0APY7.1|NUOD_MARMM RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|114340370|gb|ABI65650.1| NADH dehydrogenase subunit D [Maricaulis maris MCS10]
Length = 402
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 227/415 (54%), Positives = 298/415 (71%), Gaps = 27/415 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
+++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TYLQ + Y D
Sbjct: 13 RNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLLEHKTYLQGIGYFD 72
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYV+ M EHA+ MA EKL I +P R +Y+RV++ EI R+LNHL+ + + ++D+GA+
Sbjct: 73 RLDYVAPMNQEHAFCMAAEKLAGITVPKRGEYVRVLYCEIGRVLNHLLNVTTQAMDVGAL 132
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
L+ F ERE L+ YE SG+RMHA Y+RPGGV++DLP
Sbjct: 133 TPPLWGFEEREKLMVFYERASGSRMHAHYFRPGGVHQDLPM------------------- 173
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
L++ I + ++FP +D+ ++LLT+NRI+KQR V IGVV+ E L+ GF+G M
Sbjct: 174 ------KLVEDIRAWCDQFPAKLDDIDSLLTENRIFKQRNVDIGVVTKEDVLAWGFSGVM 227
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL- 579
+RGSG+ WDLR+ QPY +Y+ L FDIP+GKNGD YDRYL R+EEMR+S KI+ QC WL
Sbjct: 228 VRGSGLAWDLRRSQPYSVYDELKFDIPVGKNGDCYDRYLCRMEEMRESVKIMIQCCDWLM 287
Query: 580 -RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
N G V++ ++K + P R MK +ME LI HFKL+TEG +V GE Y VE PKGEFG
Sbjct: 288 KDENAGEVLATDSKFSPPRRAEMKRSMEALIQHFKLYTEGVHVEEGETYVAVEAPKGEFG 347
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG+NKPYR+KIR+PGFAHL ++ M GHM++DV IIG+ D+VFGEIDR
Sbjct: 348 VYLVSDGSNKPYRLKIRAPGFAHLAAMDYMSKGHMLADVSAIIGSLDVVFGEIDR 402
>gi|388579585|gb|EIM19907.1| putative NADH-ubiquinone oxidoreductase [Wallemia sebi CBS 633.66]
Length = 449
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 225/422 (53%), Positives = 298/422 (70%), Gaps = 30/422 (7%)
Query: 272 RKDFPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRT 331
RKD +++ + +NFGPQHPAAHGVLRLILEL GE + +ADPHIGLLHR TEKL E +
Sbjct: 58 RKD---ADLRHFTVNFGPQHPAAHGVLRLILELNGEEILRADPHIGLLHRGTEKLMEYKN 114
Query: 332 YLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIG 391
Y+Q+LPYMDRLDY S M NE +Y A+EKLLNI++P RAQ+IR +F EITR+LNH+M +
Sbjct: 115 YVQALPYMDRLDYSSAMTNELSYTRAVEKLLNIEVPERAQWIRTLFSEITRILNHIMAVL 174
Query: 392 SHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSII 451
SH++D+GA+ LY F ERE L++ YE VSGAR+HAAY RPGGV DLP
Sbjct: 175 SHAMDVGALTPFLYGFEEREKLMEFYERVSGARLHAAYIRPGGVAFDLPH---------- 224
Query: 452 RNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERA 511
LL+ I + +F IDE E ++T NRIWK+R +G+G V+ + A
Sbjct: 225 ---------------GLLEDIHKWATQFSSRIDEIEEIVTGNRIWKERTIGVGRVTADEA 269
Query: 512 LSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKI 571
L F+GPMLRGSG+ WDLRK QPY+ Y+ ++FD+P+G+NGD YDRY+ R++EMR++ +I
Sbjct: 270 LDYAFSGPMLRGSGIPWDLRKTQPYDKYSEVDFDVPVGENGDCYDRYICRVQEMREAVRI 329
Query: 572 IKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVE 631
I QC + GP +++KI P R +MK +ME LIHHFK+F+EGF VP GE Y+ +E
Sbjct: 330 IGQCCN--KMPPGPYKIDDHKIVPPPRASMKESMESLIHHFKIFSEGFSVPQGETYTAIE 387
Query: 632 HPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEI 691
PKGE ++L+SDG+N+PY+ KIR+PGFAHL + H + D+V IIGT D+VFGE+
Sbjct: 388 APKGEMAVHLISDGSNRPYKCKIRAPGFAHLAGADFISRHHFLPDMVAIIGTMDLVFGEV 447
Query: 692 DR 693
DR
Sbjct: 448 DR 449
>gi|114771819|ref|ZP_01449212.1| NADH dehydrogenase subunit D [Rhodobacterales bacterium HTCC2255]
gi|114547635|gb|EAU50526.1| NADH dehydrogenase subunit D [alpha proteobacterium HTCC2255]
Length = 403
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 228/414 (55%), Positives = 301/414 (72%), Gaps = 26/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
I+++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 16 IRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYF 75
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +AIEKL I++P RA IR+++ EI R+L+H++ + + ++D+GA
Sbjct: 76 DRLDYVAPMNQEHAWCLAIEKLSGIEVPRRASLIRILYCEIGRILSHILNVTTQAMDVGA 135
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SGAR+HAAY+RPGGV++DLP+
Sbjct: 136 LTPPLWGFEEREKLMVFYERASGARLHAAYFRPGGVHQDLPQ------------------ 177
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD I +T FP+ + + + LLT+NRI+KQR V I +VS + AL GF+G
Sbjct: 178 -------DLLDDIMAWTMEFPQVLADIDGLLTENRIFKQRNVDIAIVSEQEALDWGFSGV 230
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG+ WDLR+ QPYE Y+ FDIP+GKNGD YDRYL R++EMR+S KII+Q I L
Sbjct: 231 MVRGSGMAWDLRRAQPYECYDEFEFDIPVGKNGDCYDRYLCRMQEMRESLKIIQQAIHKL 290
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
S G V++ K+T P R +MK++ME LIHHFKL+TEGF VP GE+Y VE PKGEFG+
Sbjct: 291 ESTTGDVLA-RGKLTPPNRSDMKTSMESLIHHFKLYTEGFKVPEGEVYVAVEAPKGEFGV 349
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+LVSDG+NKPY+ KIR+PG+ HL ++ + GH ++DV IIGT D+VFGEIDR
Sbjct: 350 FLVSDGSNKPYKTKIRAPGYLHLAAMDHLCKGHQLADVAAIIGTLDVVFGEIDR 403
>gi|115384346|ref|XP_001208720.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Aspergillus terreus NIH2624]
gi|114196412|gb|EAU38112.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Aspergillus terreus NIH2624]
Length = 475
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 229/408 (56%), Positives = 290/408 (71%), Gaps = 27/408 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ Y +NFGPQHPAAHGVLRLILEL GE + ++DPH+GLLHR TEKL E +TY+Q+LPY
Sbjct: 90 KIRHYTVNFGPQHPAAHGVLRLILELNGEEIVRSDPHVGLLHRGTEKLIEYKTYMQALPY 149
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLNI+IP RA+YIR MF E+TR+LNHLM + SH++D+G
Sbjct: 150 FDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKYIRTMFGEMTRILNHLMSVLSHAMDVG 209
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGAR+HAAY RPGGV +D+P
Sbjct: 210 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDIPL----------------- 252
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E LLTDNRIWK R G+GVV+ AL+M FTG
Sbjct: 253 --------GLLDDIYQWATQFGDRIDETEELLTDNRIWKARTQGVGVVNAADALNMSFTG 304
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK QPY+ Y+ + FD+P+G NGD YDRYL R+EE RQS +II QC+
Sbjct: 305 VMLRGSGVPWDIRKSQPYDAYDKVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNQ 364
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + KI+ P R MK NME LIHHF LFT+G+ VP GE YS +E PKGE G
Sbjct: 365 MPA--GPVKVEDYKISPPPRAAMKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMG 422
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDI 686
++LVSDG+ +PYR KIR+PGFAHL ++ GH+++D V IIG ++
Sbjct: 423 VFLVSDGSERPYRCKIRAPGFAHLGGFDQVARGHLLADAVAIIGMLEL 470
>gi|50556238|ref|XP_505527.1| YALI0F17248p [Yarrowia lipolytica]
gi|6689652|emb|CAB65521.1| NUCM protein [Yarrowia lipolytica]
gi|49651397|emb|CAG78336.1| YALI0F17248p [Yarrowia lipolytica CLIB122]
Length = 466
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 225/414 (54%), Positives = 296/414 (71%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
I+++ +NFGPQHPAAHGVLRLILEL GE + ++DPH+GLLHR TEKL E +TY+Q+LPY
Sbjct: 80 IRAFTINFGPQHPAAHGVLRLILELSGEEIIRSDPHVGLLHRGTEKLIEYKTYMQALPYF 139
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMM NE + +A+EKLLN+++P+R +YIR MF EITR+LNHLM + SH++D+GA
Sbjct: 140 DRLDYVSMMTNEQVFSLAVEKLLNVEVPLRGKYIRTMFGEITRVLNHLMSVCSHAMDVGA 199
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L++ YE VSGAR+HAAY RPGGV +DLP
Sbjct: 200 LTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDLP------------------- 240
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD I + +F +DE E LLTDNRIWK R V IG V+ + AL++G +GP
Sbjct: 241 ------AGLLDDIYMWATQFGDRLDEIEELLTDNRIWKLRTVNIGTVTAQDALNLGLSGP 294
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG+ +D+RK PY+ Y+ ++FD+P+G NGD YDRYL+R+ E RQS +II+QC +
Sbjct: 295 MLRGSGIPFDIRKNAPYDAYDKVDFDVPVGMNGDCYDRYLIRMAEFRQSLRIIEQCCNDM 354
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G V + KI SP R MK +ME LIHHF L+T+G+ VP GE Y+ +E PKGE G+
Sbjct: 355 PA--GAVKVEDFKINSPPRNLMKEDMEALIHHFLLYTKGYSVPPGETYTAIEAPKGEMGV 412
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
Y+VSDG+ +PY+ KIR+PGFAHL + + GH + D V IIGT D+VFGE+DR
Sbjct: 413 YVVSDGSERPYKCKIRAPGFAHLGAFDHIARGHFLPDAVAIIGTMDLVFGEVDR 466
>gi|433774829|ref|YP_007305296.1| NADH dehydrogenase I, D subunit [Mesorhizobium australicum WSM2073]
gi|433666844|gb|AGB45920.1| NADH dehydrogenase I, D subunit [Mesorhizobium australicum WSM2073]
Length = 396
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 225/416 (54%), Positives = 305/416 (73%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TYLQ+LPY+
Sbjct: 6 VRNFNINFGPQHPAAHGVLRLVLELDGEVVDRVDPHIGLLHRGTEKLIEAKTYLQALPYL 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDY + M EHA+ +A E+LL I++P R Q IRV++ EI R+++H++ + + ++D+GA
Sbjct: 66 DRLDYCAPMNQEHAFALAAERLLGIEVPRRGQLIRVLYCEIGRIMSHILNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHAAY+RPGGV++DLP
Sbjct: 126 LTPPLWGFVEREKLMVFYERASGSRMHAAYFRPGGVHQDLPR------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L++ I + + F K++D+ + LLT NRI+KQR V IG+VS A + GF+G
Sbjct: 168 -------QLVEDIGKWIDPFLKSLDDLDRLLTGNRIFKQRNVDIGIVSLADAWAWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLRK QPYE Y+ ++FDIP+GKNGD +DRYLVR+EEMRQS +I++QCI L
Sbjct: 221 MVRGSGSPWDLRKSQPYECYSEMDFDIPVGKNGDCFDRYLVRMEEMRQSARIMRQCIDLL 280
Query: 580 --RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+ + GPV + + K+ P R MK +ME LIHHFKL+TEG+ VP GE+Y+ VE PKGEF
Sbjct: 281 LGKESTGPVSNLDGKVVPPKRQAMKRSMEALIHHFKLYTEGYRVPAGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG NKPYR K+R+PGFAHLQ++ + GHM++DV ++G+ DIVFGE+DR
Sbjct: 341 GVYLVSDGTNKPYRCKLRAPGFAHLQAMDFLCRGHMLADVTAVLGSLDIVFGEVDR 396
>gi|354593931|ref|ZP_09011974.1| NADH dehydrogenase subunit D [Commensalibacter intestini A911]
gi|353673042|gb|EHD14738.1| NADH dehydrogenase subunit D [Commensalibacter intestini A911]
Length = 416
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 227/417 (54%), Positives = 295/417 (70%), Gaps = 27/417 (6%)
Query: 277 VIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSL 336
V+ S+ LNFGPQHP+AHGVLR+++ELEGEVV++A PHIGLLHR TEKL E + Y + L
Sbjct: 27 VLSGDSHTLNFGPQHPSAHGVLRVVMELEGEVVKRATPHIGLLHRGTEKLLEHKAYHKGL 86
Query: 337 PYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLD 396
PY DRLDY S MC EHAYV+A EKLL + +P RA++IRV+F EITR+LNHL+ + + LD
Sbjct: 87 PYFDRLDYASPMCEEHAYVLATEKLLRVDVPDRAKWIRVLFAEITRILNHLLNVTAMGLD 146
Query: 397 IGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKA 456
GAM L+A+ ERE +++ YE VSGAR HA Y+R GGV +DLP M
Sbjct: 147 CGAMTPALWAYEEREKMMEFYEGVSGARFHANYFRHGGVAKDLPAGME------------ 194
Query: 457 TKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGF 516
D I + FPK +D+ E LLT+NRIWKQR VGIGV + E ALS GF
Sbjct: 195 -------------DRIGKWVKDFPKIVDDIEGLLTNNRIWKQRTVGIGVCTTEEALSWGF 241
Query: 517 TGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCI 576
+GP LR SGV WDLR+ QPY+ Y+ ++F +P+ + GDSYDRYL+RI EMR+S KII+QC+
Sbjct: 242 SGPCLRASGVPWDLRRSQPYDNYDKVDFQVPVARQGDSYDRYLIRIVEMRESAKIIEQCL 301
Query: 577 KWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
+ G + + K++ P R +MK +ME LI+HFKL++ GF+VP G Y+ VE PKGE
Sbjct: 302 N--KMQPGAIKVESEKVSPPKRKDMKHSMESLINHFKLYSGGFHVPAGTTYTAVESPKGE 359
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YLV+DG KPYR KIR GF+HLQ+L E+ HM++D+V IIG+ D+VFGE+DR
Sbjct: 360 FGVYLVADGGTKPYRCKIRPTGFSHLQALGELSHRHMLADMVAIIGSMDLVFGEVDR 416
>gi|337268164|ref|YP_004612219.1| NADH dehydrogenase I subunit D [Mesorhizobium opportunistum
WSM2075]
gi|336028474|gb|AEH88125.1| NADH dehydrogenase I, D subunit [Mesorhizobium opportunistum
WSM2075]
Length = 396
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 225/416 (54%), Positives = 305/416 (73%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TYLQ++PY+
Sbjct: 6 VRNFNINFGPQHPAAHGVLRLVLELDGEVVDRVDPHIGLLHRGTEKLIEAKTYLQAVPYL 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDY + M EHA+ +A E+LL I++P R Q IRV++ EI R+++H++ + + ++D+GA
Sbjct: 66 DRLDYCAPMNQEHAFALAAERLLGIEVPRRGQLIRVLYCEIGRIMSHILNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHAAY+RPGGV++DLP
Sbjct: 126 LTPPLWGFVEREKLMVFYERASGSRMHAAYFRPGGVHQDLPR------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L++ I + + F K++D+ + LLT NRI+KQR V IG+VS A + GF+G
Sbjct: 168 -------QLVEDIGKWIDPFLKSLDDLDKLLTGNRIFKQRNVDIGIVSLADAWAWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLRK QPYE Y+ ++FDIPIGKNGD +DRYLVR+EEMRQS KI++QC+ L
Sbjct: 221 MVRGSGSPWDLRKSQPYECYSEMDFDIPIGKNGDCFDRYLVRMEEMRQSAKIMRQCVDLL 280
Query: 580 --RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+ + GPV + + K+ P R MK +ME LIHHFKL+TEG+ VP GE+Y+ VE PKGEF
Sbjct: 281 LGKESTGPVSNLDGKVVPPKRQAMKRSMEALIHHFKLYTEGYRVPAGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG NKPYR K+R+PGFAHLQ++ + GHM++DV ++G+ DIVFGE+DR
Sbjct: 341 GVYLVSDGTNKPYRCKLRAPGFAHLQAMDFLCRGHMLADVTAVLGSLDIVFGEVDR 396
>gi|328862441|gb|EGG11542.1| hypothetical protein MELLADRAFT_33293 [Melampsora larici-populina
98AG31]
Length = 469
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 230/412 (55%), Positives = 293/412 (71%), Gaps = 27/412 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++ + +NFGPQHPAAHGVLRLILE+ GE + +ADPH+GLLHR TEKL E + Y Q+LPY
Sbjct: 77 MRHFTVNFGPQHPAAHGVLRLILEMNGEEILRADPHVGLLHRGTEKLIEYKNYTQALPYF 136
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMM NE Y A+EKLLNI++P RA++IR +F EITR+LNHLM + +H++D+GA
Sbjct: 137 DRLDYVSMMTNELCYSRAVEKLLNIEVPDRAKWIRTLFGEITRVLNHLMAVLTHAMDVGA 196
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L++ YE VSGAR+HAAY RPGGV DLP
Sbjct: 197 LTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVAFDLPH------------------ 238
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD I + F IDE+E +LT+NRIWKQR +GIG V+ AL+ GF+G
Sbjct: 239 -------GLLDDIFTWATAFSHRIDEFEEVLTENRIWKQRTIGIGKVTVADALNYGFSGV 291
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSGV WD+RK +PY+ Y+ + FDIP+GKNGD YDRYL RIEE RQS +II QC+ +
Sbjct: 292 MLRGSGVPWDIRKSEPYDAYDQVEFDIPVGKNGDCYDRYLCRIEEFRQSLRIIHQCLNKM 351
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + ++ K+T P R +MK +ME LIHHFKLF+EG+ VP GE YS +E PKGE G+
Sbjct: 352 PA--GQIKVDDYKLTPPPRASMKESMEALIHHFKLFSEGYNVPPGETYSAIEAPKGEMGV 409
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEI 691
YLVSDG+N+PYR +IR+PGFAHL M H + D+V IIGT D+VFGE+
Sbjct: 410 YLVSDGSNRPYRCRIRAPGFAHLAGADFMSRHHFLPDMVAIIGTMDLVFGEV 461
>gi|430813138|emb|CCJ29482.1| unnamed protein product [Pneumocystis jirovecii]
Length = 426
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/415 (55%), Positives = 294/415 (70%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ + +NFGPQHPAAHGVLRLILEL GE + +ADPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 39 KIRHFTVNFGPQHPAAHGVLRLILELNGEEILRADPHIGLLHRGTEKLIEYKTYLQALPY 98
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLNI++P R Q+IR MF EITR+LNHLM + SH++D+G
Sbjct: 99 FDRLDYVSMMTNEQCFSLAVEKLLNIEVPERGQFIRTMFGEITRILNHLMAVLSHAMDVG 158
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ ERE L++ YE VSGAR+HAAY RPGGV +DLP
Sbjct: 159 ALTPFLWGLEEREKLMEFYERVSGARLHAAYVRPGGVSQDLPI----------------- 201
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E LLTDNRIWK R VGIG V+ AL+ F+G
Sbjct: 202 --------GLLDDIYAWATQFGDRIDETEELLTDNRIWKARTVGIGRVNAMDALNYSFSG 253
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WD+RK PY+ Y+ + F +P+G+NGD YDRYL+RI+E+R+S II QC+
Sbjct: 254 PMLRGSGIPWDIRKVAPYDAYDKVEFGVPVGQNGDCYDRYLIRIQELRESLNIIYQCLN- 312
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ +GPV ++ KI+ P R MK NME +IHHF LFT+G+ VP GE Y+ +E PKGE G
Sbjct: 313 -KMPEGPVKVDDWKISPPPRAAMKENMEAMIHHFLLFTKGYSVPPGETYTAIEAPKGEMG 371
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDG+ +PYR KIR+PGFAHL + H + D+V IIGT D+VFGE+DR
Sbjct: 372 VYVVSDGSERPYRCKIRAPGFAHLAGADMISRNHYLPDMVAIIGTMDLVFGEVDR 426
>gi|310816713|ref|YP_003964677.1| NADH dehydrogenase I subunit D [Ketogulonicigenium vulgare Y25]
gi|385234316|ref|YP_005795658.1| NADH dehydrogenase (ubiquinone) Fe-S prote in 2, 49kDa
[Ketogulonicigenium vulgare WSH-001]
gi|308755448|gb|ADO43377.1| NADH dehydrogenase I, D subunit [Ketogulonicigenium vulgare Y25]
gi|343463227|gb|AEM41662.1| NADH dehydrogenase (ubiquinone) Fe-S prote in 2, 49kDa
[Ketogulonicigenium vulgare WSH-001]
Length = 404
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 223/415 (53%), Positives = 302/415 (72%), Gaps = 26/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPH+GLLHR TEKL E RTYLQ+LPY
Sbjct: 16 KVRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHVGLLHRGTEKLMESRTYLQNLPY 75
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
+DRLDYV+ M EHA+ +AIE+L I++P RA IRV+F EI R+LNHLM + + ++D+G
Sbjct: 76 LDRLDYVAPMNQEHAWCLAIERLAGIEVPRRASLIRVLFCEIGRVLNHLMNVTTGAMDVG 135
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE GAR+HAAY+RPGGV++DLP
Sbjct: 136 ALTPPLWGFEEREKLMLFYERACGARLHAAYFRPGGVHQDLPP----------------- 178
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L+ I+ + FP+ +DE LL ++RI+KQRLV IG +S + A++MGF+G
Sbjct: 179 --------DLIADIDAWAIGFPQFLDELSGLLVESRIFKQRLVDIGNISADEAIAMGFSG 230
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG++WDLR+ QPYE Y+ FDIP+G GD YDR+L R+ EM +S KII+Q +
Sbjct: 231 VMVRGSGLEWDLRRAQPYECYDEFEFDIPVGTKGDCYDRFLCRVAEMHESTKIIRQACEK 290
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+ G V++ K+ P R MK++ME LIHHFKL++EGF++P GE+Y+ VE PKGEFG
Sbjct: 291 LRNCPGEVMA-YGKLAPPKRAEMKTSMEALIHHFKLYSEGFHLPAGEVYAAVEAPKGEFG 349
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG+NKPYR K+R+PGFAHLQ++ M GH+++DV II T DIVFGE+DR
Sbjct: 350 VYLVSDGSNKPYRAKLRAPGFAHLQAMDHMTKGHLLADVTAIIATLDIVFGEVDR 404
>gi|389691121|ref|ZP_10180014.1| NADH dehydrogenase I, D subunit [Microvirga sp. WSM3557]
gi|388589364|gb|EIM29653.1| NADH dehydrogenase I, D subunit [Microvirga sp. WSM3557]
Length = 396
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 228/416 (54%), Positives = 302/416 (72%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
I+++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TY+Q+ PY
Sbjct: 6 IRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEYKTYVQANPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +A EKLL I++P RAQ IRV+F EI RLL+HL+ + + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAFCLATEKLLGIEVPRRAQLIRVLFSEIGRLLSHLLNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE +SG+RMHA Y+RPGGV D+
Sbjct: 126 LTPPLWGFEEREKLMIFYERISGSRMHANYFRPGGVNMDI-------------------- 165
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
Q L+D IE F + F + +D+ +TL+ NRI+KQR V IGV++ + GF+G
Sbjct: 166 -----QPELIDDIEAFCDPFLQVLDDLDTLVIGNRIFKQRNVDIGVLTLDDCFRWGFSGS 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
++R GV WDLRK QPYE Y + FDIP+GKNGD+YDR ++R+EEMRQS +I++QC+ L
Sbjct: 221 IIRSCGVAWDLRKAQPYECYEEMEFDIPVGKNGDNYDRQVIRMEEMRQSVRIMRQCLTKL 280
Query: 580 RS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
R+ +GPV + + K+ P+R +MK +ME LIHHFKL+TEGF+VP GE+Y+ VE PKGEF
Sbjct: 281 RAPDGQGPVATLDGKVAPPSRKDMKRSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG NKPYR KIR+PGFAHLQ + M GHM++DV I+G+ DIVFGE+DR
Sbjct: 341 GVYLVSDGTNKPYRCKIRAPGFAHLQGMDFMCRGHMLADVAGILGSIDIVFGEVDR 396
>gi|384918715|ref|ZP_10018784.1| NADH dehydrogenase subunit D [Citreicella sp. 357]
gi|384467428|gb|EIE51904.1| NADH dehydrogenase subunit D [Citreicella sp. 357]
Length = 410
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 226/417 (54%), Positives = 303/417 (72%), Gaps = 28/417 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 20 QIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNLPY 79
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV M EHA+ +AIE+L +P RAQ IRV++ EI R+LNHL+ + + ++D+G
Sbjct: 80 FDRLDYVGTMNQEHAWCLAIERLTGTIVPRRAQLIRVLYCEIGRILNHLLNVTTQAMDVG 139
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE SGAR+HAAY+RPGGV++DLP
Sbjct: 140 ALTPPLWGFEEREKLMVFYERASGARLHAAYFRPGGVHQDLPL----------------- 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+L+D IE + + FP +D+ + LLT+NRI+KQR IG+V+ + G++G
Sbjct: 183 --------ALIDDIEAWCSSFPGMLDDIDGLLTENRIFKQRNADIGIVTEQDIQDYGYSG 234
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
++RGSG+ WDLR+ QPYE Y+ +F IP+GKNGD YDRYL R+ EMR+S KI++Q ++
Sbjct: 235 VLVRGSGLAWDLRRAQPYECYDEFDFKIPVGKNGDCYDRYLCRMAEMRESVKIMQQALEK 294
Query: 579 LR--SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
LR N+G V++ KIT P R MK++ME LIHHFKL+TEGF+VP GE+Y+CVE PKGE
Sbjct: 295 LRLPENQGDVLA-RGKITPPQRSEMKTSMEALIHHFKLYTEGFHVPAGEVYACVEAPKGE 353
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YLV+DG NKPYR K+R+PGF HLQS+ + GH ++DV I+G+ DIVFGE+DR
Sbjct: 354 FGVYLVADGTNKPYRAKLRAPGFLHLQSMDYLCKGHQLADVAAILGSLDIVFGEVDR 410
>gi|409083972|gb|EKM84329.1| NdufS2,NADH ubiquinone oxidoreductase 49 kd subunit [Agaricus
bisporus var. burnettii JB137-S8]
Length = 456
Score = 473 bits (1218), Expect = e-130, Method: Compositional matrix adjust.
Identities = 225/415 (54%), Positives = 293/415 (70%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++ + +NFGPQHPAAHGVLR+ILEL GE + +ADPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 69 KMRHFTVNFGPQHPAAHGVLRMILELSGEEILRADPHIGLLHRGTEKLIEYKTYLQALPY 128
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE Y +A+EKLLNI++P RAQ+IR +F EITR+LNHLM + +H +D+G
Sbjct: 129 FDRLDYVSMMTNELCYSLAVEKLLNIEVPERAQWIRTLFGEITRILNHLMALLTHVMDVG 188
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+ L+ F ERE L++ YE VSGAR+HAAY RPGGV DLP
Sbjct: 189 GLTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVAFDLPH----------------- 231
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F +DE E ++T NRIWK+R +G+G+V+ ++AL F+G
Sbjct: 232 --------GLLDDIFKWATQFGSRVDEIEEVVTGNRIWKERTIGVGIVTAKQALDYSFSG 283
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WDLRK PY+ Y + FD+P+G+NGD YDRYL R++EMR+S +II QC+
Sbjct: 284 VMLRGSGVAWDLRKVAPYDKYAEVEFDVPVGQNGDCYDRYLCRVQEMRESIRIISQCLN- 342
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + G V +++K+ P R MK +ME LIHHFK+F+EG+ VP GE Y +E PKGE
Sbjct: 343 -KISPGAVKVDDHKLVPPPRAAMKESMEALIHHFKIFSEGYSVPPGETYCAIEAPKGEMA 401
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG N+PYR IR+PGFAHL M+ HM++DVV IIGT D+VF E+DR
Sbjct: 402 VYLVSDGTNRPYRCSIRAPGFAHLAGSDFMMRSHMLADVVAIIGTMDLVFSEVDR 456
>gi|407785307|ref|ZP_11132455.1| NADH dehydrogenase subunit D [Celeribacter baekdonensis B30]
gi|407203339|gb|EKE73326.1| NADH dehydrogenase subunit D [Celeribacter baekdonensis B30]
Length = 414
Score = 473 bits (1218), Expect = e-130, Method: Compositional matrix adjust.
Identities = 226/417 (54%), Positives = 302/417 (72%), Gaps = 28/417 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ +NFGPQHPAAHGVLR++LEL+GE+V +ADPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 24 KIRNFNINFGPQHPAAHGVLRMVLELDGEIVERADPHIGLLHRGTEKLMESRTYLQNLPY 83
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
+DRLDYV+ M EHA+ +AIEKL ++IP RA IRV++ EI R+LNHL+ + ++D+G
Sbjct: 84 LDRLDYVAPMNQEHAWCLAIEKLAGVEIPRRASLIRVLYSEIGRVLNHLLNTTTGAMDVG 143
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE GAR+H+AY+RPGGV++DLP
Sbjct: 144 ALTPPLWGFEEREKLMIFYERACGARLHSAYFRPGGVHQDLPP----------------- 186
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LL I+ + + FPK +D+ LLT+NRI+KQR V IGV+S + AL GF+G
Sbjct: 187 --------ELLADIDAWADHFPKILDDIHYLLTENRIFKQRTVDIGVISEQEALDWGFSG 238
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG+ WDLR+ QPYE Y+ +F IP+G NGD YDRYL R++EM +S KIIKQ +
Sbjct: 239 VMVRGSGMAWDLRRAQPYECYDEFDFQIPVGTNGDCYDRYLCRMQEMYESTKIIKQAVAL 298
Query: 579 LR--SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
L+ N+G V++ K+T P R +MK++ME LIHHFKL+TEGF +P GE+Y+ VE PKGE
Sbjct: 299 LQLPENQGDVLA-RGKLTPPKRADMKTSMEALIHHFKLYTEGFKLPEGEVYAAVEAPKGE 357
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+Y+VSDG NKPYR K+R+PG+ HLQ++ M GH ++DV +I T DIVFGE+DR
Sbjct: 358 FGVYMVSDGTNKPYRAKLRAPGYLHLQAMDHMAKGHQLADVSALIATMDIVFGEVDR 414
>gi|126736068|ref|ZP_01751812.1| NADH dehydrogenase I, D subunit [Roseobacter sp. CCS2]
gi|126714625|gb|EBA11492.1| NADH dehydrogenase I, D subunit [Roseobacter sp. CCS2]
Length = 412
Score = 473 bits (1217), Expect = e-130, Method: Compositional matrix adjust.
Identities = 223/415 (53%), Positives = 300/415 (72%), Gaps = 26/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 24 QIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNLPY 83
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
+DRLDYV+ M EHA+ +AIE+L ++P RA IRV++ EI R+L+HL+ + + ++D+G
Sbjct: 84 LDRLDYVAPMNQEHAWCLAIERLTGTEVPRRASLIRVLYSEIGRILSHLLNVTTQAMDVG 143
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE GAR+HAAY+RPGGV++DLP+
Sbjct: 144 ALTPPLWGFEEREKLMIFYERACGARLHAAYFRPGGVHQDLPD----------------- 186
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L++ I+ + FPK +D+ + LLT+NRI+KQR IG+V+ E GF+G
Sbjct: 187 --------QLVEDIDTWAIEFPKVLDDIDGLLTENRIFKQRNADIGIVTEEDIQDWGFSG 238
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG+ WDLR+ QPYE Y+ F +P+GKNGD YDRYL R+EEMRQS II+Q +
Sbjct: 239 VMVRGSGLAWDLRRAQPYECYDEFEFQVPVGKNGDCYDRYLCRMEEMRQSTHIIRQACEK 298
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR KG V++ K+T P R MK++ME LIHHFKL+TEGF+VP GE+Y+ VE PKGEFG
Sbjct: 299 LRHEKGDVMA-RGKMTPPTRGEMKTSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGEFG 357
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLV+DG N+PYR K+R+PG+ HLQ++ + GH ++DV IIGT D+VFGEIDR
Sbjct: 358 VYLVADGTNQPYRAKLRAPGYLHLQAMDYICKGHQLADVSAIIGTMDVVFGEIDR 412
>gi|398353157|ref|YP_006398621.1| NADH-quinone oxidoreductase subunit D [Sinorhizobium fredii USDA
257]
gi|390128483|gb|AFL51864.1| NADH-quinone oxidoreductase subunit D [Sinorhizobium fredii USDA
257]
Length = 396
Score = 473 bits (1217), Expect = e-130, Method: Compositional matrix adjust.
Identities = 225/416 (54%), Positives = 301/416 (72%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 6 VRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIEAKTYLQAIPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +A+E+L ++PIR Q IRV++ EI R+L+HL+ + + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAFAIAVERLTGTEVPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE GARMH+AY+RPGGV++DLP
Sbjct: 126 LTPPLWGFEEREKLMVFYERACGARMHSAYFRPGGVHQDLPH------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L++ I + + F K +D+ + LLT NRI+KQR V IGVVS E A + GF+G
Sbjct: 168 -------ELVEDIGKWIDPFLKTVDDIDELLTGNRIFKQRNVDIGVVSLEDAWAWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLR+ QPYE Y+ + FDIPIGKNGD YDRYL+R+ EMRQS +I++QC+ L
Sbjct: 221 MVRGSGAAWDLRRAQPYECYSEMEFDIPIGKNGDCYDRYLIRMIEMRQSARIMRQCVDRL 280
Query: 580 RSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+ GPV S + KI P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGEF
Sbjct: 281 LGDAKIGPVSSLDGKIVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG NKPYR KIR+PG+AHLQ++ + GH ++DV ++G+ DIVFGE+DR
Sbjct: 341 GVYLVSDGTNKPYRCKIRAPGYAHLQAMDFLCRGHQLADVSAVLGSLDIVFGEVDR 396
>gi|57014017|ref|YP_173488.1| NADH dehydrogenase subunit 7 [Nicotiana tabacum]
Length = 394
Score = 473 bits (1217), Expect = e-130, Method: Compositional matrix adjust.
Identities = 232/415 (55%), Positives = 296/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK++ NFGPQHPAAHGV R +LE+ GEVV +A+PHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 7 QIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQALPY 66
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DR DYVSMM EHA+ A+E+LLN ++P+RAQYIRV+F EITR+ NH + + +H++D+G
Sbjct: 67 SDRSDYVSMMAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAMDVG 126
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A L+AF ERE LL+ YE VSGARMHA++ RPGGV +DLP
Sbjct: 127 ASTPFLWAFEEREKLLEFYERVSGARMHASFIRPGGVAQDLP------------------ 168
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
G +D I+ FT +F IDE E + T NRIWKQRLV IG V+ ++A GF+G
Sbjct: 169 ------LGLCID-IDSFTQQFASRIDELEEMSTGNRIWKQRLVDIGTVTAQQAKDWGFSG 221
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WDLRK PY++++ L+ DIP+G GD YDRY +RIEEMRQS +II QC+
Sbjct: 222 VMLRGSGVCWDLRKAAPYDVHDQLDPDIPVGTRGDRYDRYCIRIEEMRQSVRIIVQCLNQ 281
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ S G + +++ K+ P+R MK +ME IHHF+ +TEGF VP Y+ VE PKGEFG
Sbjct: 282 MPS--GMIKADDRKLCPPSRSRMKLSMESSIHHFEPYTEGFSVPAPSTYTAVEAPKGEFG 339
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++LVS+G+N+PYR KIR+PGFAH Q L M HM +DVVTIIGTQDIV GE+DR
Sbjct: 340 VFLVSNGSNRPYRRKIRAPGFAHSQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 394
>gi|15130884|emb|CAC48167.1| NADH dehydrogenase subunit 7 [Dichodontium pellucidum]
Length = 364
Score = 473 bits (1217), Expect = e-130, Method: Compositional matrix adjust.
Identities = 231/394 (58%), Positives = 286/394 (72%), Gaps = 33/394 (8%)
Query: 295 HGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAY 354
HGVLRL+LE+ GEVV +A+PHIGLLHR TEKL E +TYLQ+LPY DRLDYVSMM EHAY
Sbjct: 1 HGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMAQEHAY 60
Query: 355 VMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLLYAFREREDLL 414
+A+EKL N ++P+RAQYIRV+F EITR+LNHL+ + +H++D+GA+ L+AF ERE LL
Sbjct: 61 SLAVEKLCNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMDVGALTPFLWAFEEREKLL 120
Query: 415 DCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENRQGSLLDFIED 474
+ YE VSGARMHA+Y RPGGV +D+P L ED
Sbjct: 121 EFYERVSGARMHASYIRPGGVAQDMP----------------------------LGLSED 152
Query: 475 ---FTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGSGVKWDLR 531
FT +F IDE E +LT+NRIWKQRLV IG V+ ++AL GF+G MLRGSGV WDLR
Sbjct: 153 IFLFTQQFASRIDEIEEMLTNNRIWKQRLVDIGTVTAQQALDWGFSGVMLRGSGVCWDLR 212
Query: 532 KKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKGPVISNNN 591
K PY++YN L FD+P+G GD YDRY +RIEEMRQS +II QC+ + S G + +++
Sbjct: 213 KSAPYDVYNQLIFDVPVGIRGDCYDRYCIRIEEMRQSIRIIMQCLNQMPS--GMIKADDR 270
Query: 592 KITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKPYR 651
K+ P+R MK +ME LIHHFKL+TEGFYVP Y+ VE PKGEFG++LVS+G N+PYR
Sbjct: 271 KLCPPSRSQMKQSMESLIHHFKLYTEGFYVPASSTYTAVEAPKGEFGVFLVSNGTNRPYR 330
Query: 652 IKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQD 685
KIR+PGFAHLQ L M HM+SDVVTIIGTQD
Sbjct: 331 CKIRAPGFAHLQGLDFMSKHHMLSDVVTIIGTQD 364
>gi|149184635|ref|ZP_01862953.1| NADH-quinone oxidoreductase chain D [Erythrobacter sp. SD-21]
gi|148831955|gb|EDL50388.1| NADH-quinone oxidoreductase chain D [Erythrobacter sp. SD-21]
Length = 405
Score = 473 bits (1217), Expect = e-130, Method: Compositional matrix adjust.
Identities = 220/414 (53%), Positives = 299/414 (72%), Gaps = 26/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
I +Y +NFGPQHPAAHGVLR+++EL+GE++ + DPH+GLLHR TEKL E +TYLQ+LPY
Sbjct: 18 ITNYTINFGPQHPAAHGVLRMVMELDGEIIERVDPHVGLLHRGTEKLIEHKTYLQALPYF 77
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDY S + E++YV+AIEKLLN+++P RAQYIRV+F E+TR+ NH++ IG+H +D+GA
Sbjct: 78 DRLDYCSPLAQEYSYVLAIEKLLNVEVPERAQYIRVLFAELTRICNHMLNIGAHVMDVGA 137
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M L+ F RED L+ +E +SGARMH AY RPGGV++D+PE +
Sbjct: 138 MTPNLWVFELREDCLNFFERMSGARMHHAYLRPGGVHQDVPEKL---------------- 181
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D E R P+ + +L+ DNRI+KQR V I VVS + A++ GF+GP
Sbjct: 182 --------LVDIGEWLDTRLPELFGDAMSLVLDNRIFKQRNVDIAVVSKDDAVAWGFSGP 233
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+R +GV WDLRK QPY++Y+ + FDIP+G N D YDR++VR++E+ +S KI+KQC++ +
Sbjct: 234 MIRAAGVPWDLRKSQPYDVYDRMEFDIPVGTNSDCYDRFVVRVKEVYESAKIMKQCLRDM 293
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ GP+ S + K++ P R MK +ME LIHHFKL+TEGF+VP GE+Y E PKGEFG+
Sbjct: 294 PT--GPIASYDRKVSPPKRAEMKQSMEALIHHFKLYTEGFHVPAGEVYVATESPKGEFGV 351
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+NKPYR KIR F+HLQ++ M GHM+ D I+G D+VFGE DR
Sbjct: 352 YLVSDGSNKPYRCKIRPTAFSHLQAMDFMCKGHMLPDATAILGAIDVVFGECDR 405
>gi|405124300|gb|AFR99062.1| NADH-ubiquinone oxidoreductase [Cryptococcus neoformans var. grubii
H99]
Length = 452
Score = 473 bits (1217), Expect = e-130, Method: Compositional matrix adjust.
Identities = 225/415 (54%), Positives = 294/415 (70%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
E++ + +NFGPQHPAAHGVLRLILEL GE + +ADPHIGLLHR TEKL E + Y Q+LPY
Sbjct: 65 EMRHFTVNFGPQHPAAHGVLRLILELNGEEILRADPHIGLLHRGTEKLIEYKNYTQALPY 124
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE +Y +A+E+LLNI++P RA++IR +F EITR+LNHLM + +H++D+G
Sbjct: 125 FDRLDYVSMMTNELSYSIAVERLLNIEVPERAKWIRTLFGEITRVLNHLMAVLTHAMDVG 184
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGARMHAAY RPGGV DLP
Sbjct: 185 ALTPFLWGFEEREKLMEFYERVSGARMHAAYVRPGGVAFDLPH----------------- 227
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F +DE E ++T NRIWKQR +GIG V+ ++AL F+G
Sbjct: 228 --------GLLDDIFKWATQFSSRVDEVEEVVTGNRIWKQRTIGIGPVTAQQALDYSFSG 279
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ WD+RK PY+ Y+ + FD+P+GKNGD YDRYL R++E R+S +II QC+
Sbjct: 280 VMLRGSGIPWDIRKVAPYDAYDKVEFDVPVGKNGDCYDRYLCRVQEFRESLRIIGQCLN- 338
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ G +++KI P R +MK +ME LIHHFK+F+EG+ VP GE Y+ +E PKGE G
Sbjct: 339 -KIPDGAYKVDDHKIVPPPRASMKESMESLIHHFKIFSEGYSVPPGETYAAIEAPKGEMG 397
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG+N+PY+ KIR+PGFAHL M+ H + D V IIGT D+VFGE+DR
Sbjct: 398 VYLVSDGSNRPYKCKIRAPGFAHLAGADFMMRHHFLPDAVAIIGTMDLVFGEVDR 452
>gi|319783429|ref|YP_004142905.1| NADH dehydrogenase I subunit D [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317169317|gb|ADV12855.1| NADH dehydrogenase I, D subunit [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 396
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 235/416 (56%), Positives = 295/416 (70%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHP+AHGVLRL+LEL+GE+V +ADPHIGLLHR TEKL E + YLQ+LPY
Sbjct: 6 VRNFTINFGPQHPSAHGVLRLVLELDGEIVERADPHIGLLHRGTEKLIEHKNYLQALPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +A EKLL+I +P R Q +RV+F EI RLL+HL+ + + ++DIGA
Sbjct: 66 DRLDYVAPMNQEHAFCLAAEKLLDITVPKRGQLVRVLFCEIGRLLSHLLNVTTQAMDIGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SGARMHA Y+R GGV++DLP
Sbjct: 126 LTPPLWGFAEREKLMVFYERASGARMHANYFRIGGVHQDLP------------------- 166
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD I F + F K D + LLT +RI+KQR V +GV+ + A GF+G
Sbjct: 167 ------AKLLDDIWAFCDPFLKVCDNLDDLLTGSRIFKQRNVDVGVIGLDDAWRWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLRK QPYE Y ++FDIP+GKNGD YDRYLVR+EEMRQS +I+KQC++ L
Sbjct: 221 MVRGSGAAWDLRKAQPYECYPDMDFDIPVGKNGDCYDRYLVRMEEMRQSVRIMKQCLEKL 280
Query: 580 RS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
RS +GPV N KIT P R MK +ME I HFKL+TEG VP GE+Y+ VE PKGEF
Sbjct: 281 RSPEGQGPVAIPNQKITPPRRATMKRSMEATIQHFKLYTEGHRVPAGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG N PYR KIR+P FAHLQ++ + GHMI+DV IIG+ DIVFGEIDR
Sbjct: 341 GVYLVSDGGNVPYRCKIRAPSFAHLQAMDFLSRGHMIADVAAIIGSLDIVFGEIDR 396
>gi|146415140|ref|XP_001483540.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Meyerozyma guilliermondii ATCC 6260]
gi|146392013|gb|EDK40171.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Meyerozyma guilliermondii ATCC 6260]
Length = 476
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 225/415 (54%), Positives = 297/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ + +NFGPQHPAAHGVLRLILEL GE + ++DPH+GLLHR TEKL E +TY+Q+LPY
Sbjct: 89 KIRHFTINFGPQHPAAHGVLRLILELHGEEIVRSDPHVGLLHRGTEKLIESKTYMQALPY 148
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLN+++P+RA+YIR +F EITR+LNH M + SH +D+G
Sbjct: 149 FDRLDYVSMMTNELVFALAVEKLLNVEVPLRAKYIRTLFGEITRVLNHCMSVLSHIMDVG 208
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+ L+ F ERE L++ YE VSGAR+H+AY RPGGV +DLP
Sbjct: 209 GLTPFLWGFEEREKLMEFYERVSGARLHSAYVRPGGVAQDLP------------------ 250
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E L+TDNRIW+ R +GVVS E AL+ +G
Sbjct: 251 -------AGLLDDIYMWATQFGDRIDEVEELVTDNRIWQARTKDVGVVSAEDALNYSLSG 303
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ +D+RK QPY+ Y L++FDIP+G+NGD YDRYL+R+ E RQS +II+QCI
Sbjct: 304 VMLRGSGIAYDIRKAQPYDAYELVDFDIPVGQNGDCYDRYLIRMAEFRQSLRIIEQCIND 363
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ +GPV + KI+ PAR MK +ME LIHHF LFT+G+ VP GE Y+ +E PKGE
Sbjct: 364 M--PEGPVKVEDFKISPPARQVMKEDMEALIHHFLLFTKGYAVPPGETYTAIEAPKGEMA 421
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDG+ +PYR KIR+PGFAHL + + G++++D V IIGT D+VFGE+DR
Sbjct: 422 VYVVSDGSERPYRCKIRAPGFAHLGAFDHISRGNLLADAVAIIGTMDLVFGEVDR 476
>gi|134118060|ref|XP_772411.1| hypothetical protein CNBL2770 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255024|gb|EAL17764.1| hypothetical protein CNBL2770 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 452
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 225/415 (54%), Positives = 293/415 (70%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
E++ + +NFGPQHPAAHGVLRLILEL GE + +ADPHIGLLHR TEKL E + Y Q+LPY
Sbjct: 65 EMRHFTVNFGPQHPAAHGVLRLILELNGEEILRADPHIGLLHRGTEKLIEYKNYTQALPY 124
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE +Y +A+E+LLNI++P RA++IR +F EITR+LNHLM + +H++D+G
Sbjct: 125 FDRLDYVSMMTNELSYSIAVERLLNIEVPERAKWIRTLFGEITRVLNHLMAVLTHAMDVG 184
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGARMHAAY RPGGV DLP
Sbjct: 185 ALTPFLWGFEEREKLMEFYERVSGARMHAAYVRPGGVAFDLPH----------------- 227
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F +DE E ++T NRIWKQR +GIG V+ ++AL F+G
Sbjct: 228 --------GLLDDIFKWATQFSSRVDEVEEVVTGNRIWKQRTIGIGPVTAQQALDYSFSG 279
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ WD+RK PY+ Y+ + FD+P+GKNGD YDRYL R++E R+S +II QC+
Sbjct: 280 VMLRGSGIPWDIRKVAPYDAYDKVEFDVPVGKNGDCYDRYLCRVQEFRESLRIIGQCLN- 338
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ G +++KI P R +MK +ME LIHHFK+F+EG+ VP GE Y+ +E PKGE G
Sbjct: 339 -KIPDGAYKVDDHKIVPPPRASMKESMESLIHHFKIFSEGYSVPPGETYAAIEAPKGEMG 397
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG N+PY+ KIR+PGFAHL M+ H + D V IIGT D+VFGE+DR
Sbjct: 398 VYLVSDGTNRPYKCKIRAPGFAHLAGADFMMRHHFLPDAVAIIGTMDLVFGEVDR 452
>gi|58270580|ref|XP_572446.1| NADH-ubiquinone oxidoreductase [Cryptococcus neoformans var.
neoformans JEC21]
gi|57228704|gb|AAW45139.1| NADH-ubiquinone oxidoreductase, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 452
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 225/415 (54%), Positives = 293/415 (70%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
E++ + +NFGPQHPAAHGVLRLILEL GE + +ADPHIGLLHR TEKL E + Y Q+LPY
Sbjct: 65 EMRHFTVNFGPQHPAAHGVLRLILELNGEEILRADPHIGLLHRGTEKLIEYKNYTQALPY 124
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE +Y +A+E+LLNI++P RA++IR +F EITR+LNHLM + +H++D+G
Sbjct: 125 FDRLDYVSMMTNELSYSIAVERLLNIEVPERAKWIRTLFGEITRVLNHLMAVLTHAMDVG 184
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGARMHAAY RPGGV DLP
Sbjct: 185 ALTPFLWGFEEREKLMEFYERVSGARMHAAYVRPGGVAFDLPH----------------- 227
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F +DE E ++T NRIWKQR +GIG V+ ++AL F+G
Sbjct: 228 --------GLLDDIFKWATQFSSRVDEVEEVVTGNRIWKQRTIGIGPVTAQQALDYSFSG 279
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ WD+RK PY+ Y+ + FD+P+GKNGD YDRYL R++E R+S +II QC+
Sbjct: 280 VMLRGSGIPWDIRKVAPYDAYDKVEFDVPVGKNGDCYDRYLCRVQEFRESLRIIGQCLN- 338
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ G +++KI P R +MK +ME LIHHFK+F+EG+ VP GE Y+ +E PKGE G
Sbjct: 339 -KIPDGAYKVDDHKIVPPPRASMKESMESLIHHFKIFSEGYSVPPGETYAAIEAPKGEMG 397
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG N+PY+ KIR+PGFAHL M+ H + D V IIGT D+VFGE+DR
Sbjct: 398 VYLVSDGTNRPYKCKIRAPGFAHLAGADFMMRHHFLPDAVAIIGTMDLVFGEVDR 452
>gi|163759540|ref|ZP_02166625.1| NADH dehydrogenase subunit D [Hoeflea phototrophica DFL-43]
gi|162283137|gb|EDQ33423.1| NADH dehydrogenase subunit D [Hoeflea phototrophica DFL-43]
Length = 396
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 223/416 (53%), Positives = 301/416 (72%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 6 VRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIEAKTYLQAVPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +A+EKL + +P R Q IRV++ EI R+L+HL+ + + +LD+GA
Sbjct: 66 DRLDYVAPMNQEHAFALAVEKLAGVTVPKRGQLIRVLYSEIGRILSHLLNVTTQALDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE GAR+HAAY+RPGGV++DLP+
Sbjct: 126 LTPPLWGFEEREKLMVFYERACGARLHAAYFRPGGVHQDLPD------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L++ I + + F + D+ E LLTDNRI+KQR V I +V + A + GF+G
Sbjct: 168 -------DLVEDIGKWCDPFLQTCDDIEGLLTDNRIFKQRNVDIAIVKLDDAWAWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLR+ QPYE Y+ ++FDIPIGKNGD YDRYL+R++EMR+S KI+KQC++ L
Sbjct: 221 MVRGSGAAWDLRRSQPYECYSEMDFDIPIGKNGDCYDRYLIRMQEMRESVKIMKQCVEQL 280
Query: 580 --RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+ GPV + + KI P R MK +ME LIHHFKL+TEG+ VP GE+Y+ VE PKGEF
Sbjct: 281 LGKEKTGPVSATDGKIVPPKRGEMKRSMEALIHHFKLYTEGYRVPEGEVYTAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG+NKPYR KIR+PG+AHLQ++ + GH ++DV +G+ DIVFGE+DR
Sbjct: 341 GVYLVSDGSNKPYRCKIRAPGYAHLQAMDFICRGHQLADVSAALGSLDIVFGEVDR 396
>gi|268581941|ref|XP_002645954.1| C. briggsae CBR-GAS-1 protein [Caenorhabditis briggsae]
Length = 482
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 231/409 (56%), Positives = 288/409 (70%), Gaps = 27/409 (6%)
Query: 285 LNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDY 344
LNFGPQHPAAHGVLRL+L+LEGEV+ KA PHIGLLHRATEKL E +TY Q+LPY DRLDY
Sbjct: 101 LNFGPQHPAAHGVLRLVLKLEGEVIIKAIPHIGLLHRATEKLIEHKTYTQALPYFDRLDY 160
Query: 345 VSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLL 404
VSMMCNE A+ +A+EKLL I IP RA+YIR + E+TR+ NH+M I +H+LD+GAM
Sbjct: 161 VSMMCNEQAWSLAVEKLLGIDIPPRAKYIRTLMGELTRIQNHIMGITTHALDVGAMTPFF 220
Query: 405 YAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENR 464
+ F ERE L + E VSGARMHA Y RPGGV D+P
Sbjct: 221 WMFEEREKLFEFSERVSGARMHANYVRPGGVAWDMPI----------------------- 257
Query: 465 QGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGS 524
L+D I D+ +FP+ IDE E +LT+NRIWK R + IG+VS AL+ GFTG M+RGS
Sbjct: 258 --GLMDDIYDWAIKFPERIDELEDMLTENRIWKARTIDIGLVSAADALNWGFTGVMVRGS 315
Query: 525 GVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKG 584
G+K D+RK QPY+ Y+ + FD+PIG GD YDRYL R+EEMRQS II QC+ + + G
Sbjct: 316 GIKQDVRKTQPYDAYDQVEFDVPIGTKGDCYDRYLCRVEEMRQSLNIIHQCLNKMPT--G 373
Query: 585 PVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSD 644
+ +++K+ P R MK NME LIHHFK FTEGF VP G Y +E PKGEFG+YLV+D
Sbjct: 374 EIKVDDHKVVPPKRAEMKENMESLIHHFKFFTEGFQVPPGATYVPIEAPKGEFGVYLVAD 433
Query: 645 GANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G KPYR IR+PGFAHL ++ ++ +I+D+V +IGT DIVFGE+DR
Sbjct: 434 GTGKPYRCFIRAPGFAHLAAIHDVCYMSLIADIVAVIGTMDIVFGEVDR 482
>gi|409052002|gb|EKM61478.1| hypothetical protein PHACADRAFT_248119 [Phanerochaete carnosa
HHB-10118-sp]
Length = 474
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/418 (54%), Positives = 293/418 (70%), Gaps = 27/418 (6%)
Query: 276 PVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQS 335
P +++ + +NFGPQHPAAHGVLRLILEL GE + +ADPHIGLLHR TEKL E +TY Q+
Sbjct: 84 PESQMRHFTVNFGPQHPAAHGVLRLILELNGEEILRADPHIGLLHRGTEKLIEYKTYTQA 143
Query: 336 LPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSL 395
LPY DRLDYVSMM NE Y +A+EKLLNI++P RA++IR MF EITR+LNHLM I +H++
Sbjct: 144 LPYFDRLDYVSMMTNELCYSLAVEKLLNIEVPERAKWIRTMFGEITRVLNHLMAILTHAM 203
Query: 396 DIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNK 455
D+GA+ L+ F ERE L++ YE VSGAR+HAAY RPGGV DLP
Sbjct: 204 DVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVAFDLPH-------------- 249
Query: 456 ATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMG 515
LL+ I + +F +DE E ++T NRIWK R + IG V+ ++AL
Sbjct: 250 -----------GLLEDIYMWATQFSSRVDEIEEVVTGNRIWKSRTIDIGKVTAKQALDYS 298
Query: 516 FTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQC 575
F+G MLRGSG+ WDLRK QPY+ Y+ + FD+PIGKNGD YDRYL R++E R+S II QC
Sbjct: 299 FSGVMLRGSGIPWDLRKVQPYDKYDEVEFDVPIGKNGDCYDRYLCRVQEFRESLHIIHQC 358
Query: 576 IKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
+ + + G ++ K+ P R +MK +ME LIHHFKLF+EG+ VP GE YS +E PKG
Sbjct: 359 LNKMPA--GAFKVDDYKLVPPPRASMKESMESLIHHFKLFSEGYSVPPGETYSAIEAPKG 416
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
E G+YLVSDG N+PYR KIR+PGFAHL M+ H ++D V +IGT D+VFGE+DR
Sbjct: 417 EMGVYLVSDGTNRPYRCKIRAPGFAHLAGADFMMRRHYLADAVAVIGTMDLVFGEVDR 474
>gi|150396114|ref|YP_001326581.1| NADH dehydrogenase subunit D [Sinorhizobium medicae WSM419]
gi|218534362|sp|A6U7W6.1|NUOD1_SINMW RecName: Full=NADH-quinone oxidoreductase subunit D 1; AltName:
Full=NADH dehydrogenase I subunit D 1; AltName:
Full=NDH-1 subunit D 1
gi|150027629|gb|ABR59746.1| NADH dehydrogenase I, D subunit [Sinorhizobium medicae WSM419]
Length = 396
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 224/416 (53%), Positives = 301/416 (72%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 6 VRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIEAKTYLQAIPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +A+E+L ++PIR Q IRV++ EI R+L+HL+ + + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAFALAVERLTGTQVPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE GARMHAAY+RPGGV++DLP
Sbjct: 126 LTPPLWGFEEREKLMVFYERACGARMHAAYFRPGGVHQDLPH------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L++ I + + F K +D+ + LLT NRI+KQR V IGVVS E A + GF+G
Sbjct: 168 -------QLVEDIGKWIDPFLKTVDDIDELLTGNRIFKQRNVDIGVVSLEDAWAWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLR+ QPYE Y+ L FDIPIGKNGD +DRYL+R+ EMR+S +I++QC+ L
Sbjct: 221 MVRGSGAAWDLRRSQPYECYSDLEFDIPIGKNGDCFDRYLIRMIEMRESARIMRQCVDRL 280
Query: 580 RSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+ GPV S + KI P R MK +ME LIHHFKL+TEG++VP G++Y+ VE PKGEF
Sbjct: 281 LGDAKVGPVSSLDGKIVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGDVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG NKPYR KIR+PG+AHLQ++ + GH ++DV ++G+ DIVFGE+DR
Sbjct: 341 GVYLVSDGTNKPYRCKIRAPGYAHLQAMDFLCRGHQLADVSAVLGSLDIVFGEVDR 396
>gi|308487975|ref|XP_003106182.1| CRE-GAS-1 protein [Caenorhabditis remanei]
gi|308254172|gb|EFO98124.1| CRE-GAS-1 protein [Caenorhabditis remanei]
Length = 482
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 231/409 (56%), Positives = 287/409 (70%), Gaps = 27/409 (6%)
Query: 285 LNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDY 344
LNFGPQHPAAHGVLRL+L+LEGEV+ KA PHIGLLHRATEKL E +TY Q+LPY DRLDY
Sbjct: 101 LNFGPQHPAAHGVLRLVLKLEGEVIIKAIPHIGLLHRATEKLIEHKTYTQALPYFDRLDY 160
Query: 345 VSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLL 404
VSMMCNE A+ +A+EKLL I IP RA+YIR + E+TR+ NH+M I +H+LD+GAM
Sbjct: 161 VSMMCNEQAWSLAVEKLLGIDIPPRAKYIRTLMGELTRIQNHIMGITTHALDVGAMTPFF 220
Query: 405 YAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENR 464
+ F ERE L + E VSGARMHA Y RPGGV D+P
Sbjct: 221 WMFEEREKLFEFSERVSGARMHANYVRPGGVAWDMPI----------------------- 257
Query: 465 QGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGS 524
L+D I D+ +FP+ IDE E +LT+NRIWK R + IG+VS AL+ GFTG M+RGS
Sbjct: 258 --GLMDDIYDWAIKFPERIDELEDMLTENRIWKARTIDIGLVSAADALNWGFTGVMVRGS 315
Query: 525 GVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKG 584
G+K D+RK QPY+ Y+ + FD+PIG GD YDRYL RIEEMRQS I+ QC+ + G
Sbjct: 316 GIKQDVRKTQPYDAYDQVEFDVPIGTKGDCYDRYLCRIEEMRQSLNIVHQCLN--KMPAG 373
Query: 585 PVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSD 644
+ +++K+ P R MK NME LIHHFK FTEGF VP G Y +E PKGEFG+YLV+D
Sbjct: 374 EIKVDDHKVVPPKRAEMKENMESLIHHFKFFTEGFQVPPGATYVPIEAPKGEFGVYLVAD 433
Query: 645 GANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G KPYR IR+PGFAHL ++ ++ +I+D+V +IGT DIVFGE+DR
Sbjct: 434 GTGKPYRCFIRAPGFAHLAAVHDVCYMSLIADIVAVIGTMDIVFGEVDR 482
>gi|449541539|gb|EMD32522.1| hypothetical protein CERSUDRAFT_87840 [Ceriporiopsis subvermispora
B]
Length = 461
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 228/414 (55%), Positives = 294/414 (71%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++ + +NFGPQHPAAHGVLRLILEL GE V +ADPHIGLLHR TEKL E +TY Q+LPY
Sbjct: 75 MRHFTVNFGPQHPAAHGVLRLILELNGEEVLRADPHIGLLHRGTEKLIEYKTYTQALPYF 134
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMM NE Y +A+EKLLNI++P RA++IR +F EITR+LNHLM + +H++D+GA
Sbjct: 135 DRLDYVSMMTNELCYSLAVEKLLNIEVPERAKWIRTLFGEITRILNHLMAVLTHAMDVGA 194
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L++ YE VSGAR+HAAY RPGGV DLP
Sbjct: 195 LTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVAFDLPH------------------ 236
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LL+ I + +F +DE E ++T NRIWK+R +GIG V+ ++AL F+G
Sbjct: 237 -------GLLNDIYMWATQFSSRVDEIEEVVTGNRIWKERTIGIGKVTAQQALDYSFSGV 289
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSGV WD+RK PY+ Y ++FDIP+GKNGD YDRYL R++E R+S +II QC+ +
Sbjct: 290 MLRGSGVPWDIRKVAPYDKYAEVDFDIPVGKNGDCYDRYLCRVQEFRESLRIIDQCLNKM 349
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G ++ K++ P R MK +ME LIHHFKLF+EG+ VP GE Y +E PKGE G+
Sbjct: 350 PT--GAYKVDDYKLSPPPRAAMKESMESLIHHFKLFSEGYSVPPGETYVAIEAPKGEMGV 407
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG N+PYR KIR+PGFAHL M+ H+++DVV IIGT D+VFGE+DR
Sbjct: 408 YLVSDGTNRPYRCKIRAPGFAHLAGADFMMRRHLLADVVAIIGTMDLVFGEVDR 461
>gi|241957339|ref|XP_002421389.1| NADH-ubiquinone oxidoreductase subunit, mitochondrial precursor,
putative; respiratory chain complex I subunit, putative
[Candida dubliniensis CD36]
gi|223644733|emb|CAX40724.1| NADH-ubiquinone oxidoreductase subunit, mitochondrial precursor,
putative [Candida dubliniensis CD36]
Length = 479
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 233/452 (51%), Positives = 307/452 (67%), Gaps = 40/452 (8%)
Query: 242 EAFDLFGIFFDGHDDLRRLLTDYGFVGHPFRKDFPVIEIKSYKLNFGPQHPAAHGVLRLI 301
E D I +D +DD P R + +I+ + +NFGPQHPAAHGVLRLI
Sbjct: 68 EVLDDVNITWDKNDD-------------PDRLEKQNTKIRHFTINFGPQHPAAHGVLRLI 114
Query: 302 LELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKL 361
LEL GE + ++DPH+GLLHR TEKL E +TY+Q+LPY DRLDYVSMM NE + +A+EKL
Sbjct: 115 LELHGEEIVRSDPHVGLLHRGTEKLIESKTYMQALPYFDRLDYVSMMTNELVFALAVEKL 174
Query: 362 LNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLLYAFREREDLLDCYEAVS 421
LN+++P+RA+YIR +F EITR+LNH M + +H +D+G + L+ F ERE L++ YE VS
Sbjct: 175 LNVEVPLRAKYIRTLFGEITRVLNHCMSVLTHIMDVGGLTPFLWGFEEREKLMEFYERVS 234
Query: 422 GARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPK 481
GAR+H AY+RPGGV +DLP LLD I + +F
Sbjct: 235 GARLHTAYFRPGGVSQDLP-------------------------AGLLDDIYMWATQFGD 269
Query: 482 NIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGSGVKWDLRKKQPYEIYNL 541
IDE E L TDNRIWK R +G+GVVS E AL+ +G MLRGSG+ +D+RK QPY+ Y+L
Sbjct: 270 RIDEVEELCTDNRIWKDRTIGVGVVSAEDALNYSLSGVMLRGSGIPFDIRKSQPYDAYDL 329
Query: 542 LNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKGPVISNNNKITSPARINM 601
++FDI +G NGD YDRYL+R+ E RQS +II QCI + +GPV + KI+ P R M
Sbjct: 330 VDFDIAVGINGDCYDRYLIRMAEFRQSLRIIFQCINDI--PEGPVKVEDYKISPPPRSLM 387
Query: 602 KSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAH 661
K +ME LIHHF LFT+G+ VP GE Y+ +E PKGE G+Y+VSDG+ +PYR KIR+PGFAH
Sbjct: 388 KEDMEALIHHFLLFTKGYAVPQGETYTAIEAPKGEMGVYVVSDGSERPYRCKIRAPGFAH 447
Query: 662 LQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
L + + G++++D V IIGT D+VFGE+DR
Sbjct: 448 LGAFDHIARGNLLADAVAIIGTMDLVFGEVDR 479
>gi|255731902|ref|XP_002550875.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Candida tropicalis MYA-3404]
gi|240131884|gb|EER31443.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Candida tropicalis MYA-3404]
Length = 475
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 225/415 (54%), Positives = 296/415 (71%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ + +NFGPQHPAAHGVLRLILEL GE + ++DPH+GLLHR TEKL E +TY+Q+LPY
Sbjct: 88 KIRHFTINFGPQHPAAHGVLRLILELHGEEIVRSDPHVGLLHRGTEKLIETKTYMQALPY 147
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLN++IP+RA+YIR +F EITR+LNH M + +H +D+G
Sbjct: 148 FDRLDYVSMMTNEQVFALAVEKLLNVEIPLRAKYIRTLFGEITRVLNHCMSVLTHIMDVG 207
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+ L+ F ERE L++ YE VSGAR+H+AY RPGGV +DLP
Sbjct: 208 GLTPFLWGFEEREKLMEFYERVSGARLHSAYVRPGGVSQDLP------------------ 249
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E L TDNRIWK R +G+G VS E AL+ +G
Sbjct: 250 -------AGLLDDIYMWATQFGDRIDEIEELCTDNRIWKDRTIGVGYVSAEDALNYSLSG 302
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV +D+RK QPY+ Y+L++FDI +G NGD YDRYL+R+ E RQS ++I QCI
Sbjct: 303 VMLRGSGVPFDVRKSQPYDAYDLVDFDIAVGYNGDCYDRYLIRMAEFRQSLRVIFQCIND 362
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ +GPV + KI+ P+R MK +ME LIHHF LFT+G+ VP GE Y+ +E PKGE
Sbjct: 363 M--PEGPVKVEDYKISPPSRAVMKEDMEALIHHFLLFTKGYAVPAGETYTAIEAPKGEMA 420
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDG+ +PYR KIR+PGFAHL +L + G++++D V IIGT D+VFGE+DR
Sbjct: 421 VYVVSDGSERPYRCKIRAPGFAHLGALDHIARGNLLADAVAIIGTMDLVFGEVDR 475
>gi|254571861|ref|XP_002493040.1| hypothetical protein [Komagataella pastoris GS115]
gi|238032838|emb|CAY70861.1| Hypothetical protein PAS_chr3_0808 [Komagataella pastoris GS115]
gi|308152240|emb|CBI83539.1| NUCM (49 kDa) subunit of mitochondrial NADH:ubiquinone
oxidoreductase (complex I) [Komagataella pastoris]
gi|328352948|emb|CCA39346.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2 [Komagataella
pastoris CBS 7435]
Length = 482
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/427 (53%), Positives = 298/427 (69%), Gaps = 32/427 (7%)
Query: 269 HPFRKDFPV--IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKL 326
HP ++PV +I+ + LNFGPQHPAAHGVLRLILEL GE + ++DPH+GLLHR TEKL
Sbjct: 86 HP---EYPVKRTKIRHFTLNFGPQHPAAHGVLRLILELHGEEILRSDPHVGLLHRGTEKL 142
Query: 327 AEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNH 386
E +TY+Q+LPY DRLDYVSMM NE + +A+EKLLN+++P R QYIR +F EITR+LNH
Sbjct: 143 IESKTYMQALPYFDRLDYVSMMTNEQVFSLAVEKLLNLEVPERGQYIRTLFGEITRVLNH 202
Query: 387 LMWIGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQY 446
LM + SH++D+GA+ L+ F ERE L++ YE VSGAR+H+AY RPGGV +DLP
Sbjct: 203 LMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHSAYVRPGGVSQDLP------ 256
Query: 447 KSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVV 506
LLD I + +F +DE E LLTD+RIWKQR +GIG V
Sbjct: 257 -------------------AGLLDDIYMWATQFGDRLDETEELLTDSRIWKQRTIGIGEV 297
Query: 507 SPERALSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMR 566
+ E AL+ G +G MLRGSGV +D+RK QPY+ Y+ ++FDI +G GD YDRYL+R+ E R
Sbjct: 298 TAEDALNYGLSGVMLRGSGVPFDIRKSQPYDAYDKVDFDIAVGTKGDCYDRYLIRMTEFR 357
Query: 567 QSNKIIKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEI 626
QS +II+QC + GPV + K+ P R MK +ME LIHHF L+T+G+ VP GE
Sbjct: 358 QSLRIIEQCCNQM--PPGPVKVEDFKVAPPPRALMKEDMEALIHHFLLYTKGYAVPAGET 415
Query: 627 YSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDI 686
Y+ +E PKGE +Y+VSDG+ +PYR KIR+PGFAHL + + GH + D V IIGT D+
Sbjct: 416 YTAIEAPKGEMAVYVVSDGSERPYRCKIRAPGFAHLGAFDHIARGHFLPDAVAIIGTMDL 475
Query: 687 VFGEIDR 693
VFGE+DR
Sbjct: 476 VFGEVDR 482
>gi|255261986|ref|ZP_05341328.1| NADH dehydrogenase (quinone), d subunit [Thalassiobium sp. R2A62]
gi|255104321|gb|EET46995.1| NADH dehydrogenase (quinone), d subunit [Thalassiobium sp. R2A62]
Length = 405
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 225/415 (54%), Positives = 297/415 (71%), Gaps = 26/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 17 QIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNLPY 76
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +AIEKL ++P RA IRV++ EI R+LNHL+ + + ++D+G
Sbjct: 77 FDRLDYVAPMNQEHAWCLAIEKLTGTEVPRRASLIRVLYSEIGRVLNHLLNVTTQAMDVG 136
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE GAR+HAAY+RPGGV++DLP+
Sbjct: 137 ALTPPLWGFEEREKLMVFYERACGARLHAAYFRPGGVHQDLPD----------------- 179
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L++ I+ + FPK + + + LLT+NRI+KQR IGVVS + L GF+G
Sbjct: 180 --------DLIEEIDSWATEFPKVLADIDGLLTENRIFKQRNADIGVVSEQEILDWGFSG 231
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M RGSG+ WDLR+ QPYE Y+ +F IP+G NGD YDRYL R++EMR+S KII Q +
Sbjct: 232 VMARGSGLAWDLRRSQPYECYDEFDFQIPVGVNGDCYDRYLCRMQEMRESVKIIHQAVAK 291
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR KG V++ K+T P R MK++ME LIHHFKL+TEGF+VP GE+Y VE PKGEFG
Sbjct: 292 LRVEKGDVMA-RGKMTPPTRGEMKTSMEALIHHFKLYTEGFHVPEGEVYVAVEAPKGEFG 350
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YL +DG+NKPYR K+R+PG+ HLQ++ + GH ++DV IIGT D+VFGEIDR
Sbjct: 351 VYLKADGSNKPYRAKLRAPGYLHLQAMDHICKGHQLADVAAIIGTMDVVFGEIDR 405
>gi|68469164|ref|XP_721369.1| potential mitochondrial Complex I, NUCM_49kd subunit [Candida
albicans SC5314]
gi|68470189|ref|XP_720856.1| potential mitochondrial Complex I, NUCM_49kd subunit [Candida
albicans SC5314]
gi|77022732|ref|XP_888810.1| hypothetical protein CaO19_6531 [Candida albicans SC5314]
gi|46442746|gb|EAL02033.1| potential mitochondrial Complex I, NUCM_49kd subunit [Candida
albicans SC5314]
gi|46443284|gb|EAL02567.1| potential mitochondrial Complex I, NUCM_49kd subunit [Candida
albicans SC5314]
gi|76573623|dbj|BAE44707.1| hypothetical protein [Candida albicans]
gi|238883349|gb|EEQ46987.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Candida albicans
WO-1]
Length = 478
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 232/452 (51%), Positives = 307/452 (67%), Gaps = 40/452 (8%)
Query: 242 EAFDLFGIFFDGHDDLRRLLTDYGFVGHPFRKDFPVIEIKSYKLNFGPQHPAAHGVLRLI 301
E D I +D +DD P R + +I+ + +NFGPQHPAAHGVLRLI
Sbjct: 67 EVLDDVNITWDKNDD-------------PDRLEKQNTKIRHFTINFGPQHPAAHGVLRLI 113
Query: 302 LELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKL 361
LEL GE + ++DPH+GLLHR TEKL E +TY+Q+LPY DRLDYVSMM NE + +A+EKL
Sbjct: 114 LELHGEEIVRSDPHVGLLHRGTEKLIESKTYMQALPYFDRLDYVSMMTNELVFALAVEKL 173
Query: 362 LNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLLYAFREREDLLDCYEAVS 421
LN+++P+RA+YIR +F EITR+LNH M + +H +D+G + L+ F ERE L++ YE VS
Sbjct: 174 LNVEVPLRAKYIRTLFGEITRILNHCMSVLTHIMDVGGLTPFLWGFEEREKLMEFYERVS 233
Query: 422 GARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPK 481
GAR+H AY+RPGGV +DLP LLD I + +F
Sbjct: 234 GARLHTAYFRPGGVSQDLP-------------------------AGLLDDIYMWATQFGD 268
Query: 482 NIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGSGVKWDLRKKQPYEIYNL 541
IDE E L TDNRIWK R +G+GVVS E AL+ +G MLRGSG+ +D+RK QPY+ Y+L
Sbjct: 269 RIDEVEELCTDNRIWKDRTIGVGVVSAEDALNYSLSGVMLRGSGIPFDIRKSQPYDAYDL 328
Query: 542 LNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKGPVISNNNKITSPARINM 601
++FDI +G NGD YDRYL+R+ E RQS +II QCI + +GPV + KI+ P+R M
Sbjct: 329 VDFDIAVGINGDCYDRYLIRMAEFRQSLRIIFQCINDI--PEGPVKVEDYKISPPSRSLM 386
Query: 602 KSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAH 661
K +ME LIHHF LFT+G+ VP GE Y+ +E PKGE +Y+VSDG+ +PYR KIR+PGFAH
Sbjct: 387 KEDMEALIHHFLLFTKGYAVPQGETYTAIEAPKGEMAVYVVSDGSERPYRCKIRAPGFAH 446
Query: 662 LQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
L + + G++++D V IIGT D+VFGE+DR
Sbjct: 447 LGAFDHIARGNLLADAVAIIGTMDLVFGEVDR 478
>gi|421597419|ref|ZP_16041043.1| NADH dehydrogenase subunit D [Bradyrhizobium sp. CCGE-LA001]
gi|404270478|gb|EJZ34534.1| NADH dehydrogenase subunit D [Bradyrhizobium sp. CCGE-LA001]
Length = 398
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 226/416 (54%), Positives = 305/416 (73%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 8 LRNFTINFGPQHPAAHGVLRLVLELDGEVVARVDPHIGLLHRGTEKLIEAKTYLQAIPYF 67
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ + EHA+ +AIE+L+ I++P R Q IRV++ EI+R+L+HL+ + + ++D+GA
Sbjct: 68 DRLDYVAPLTQEHAFCLAIERLIGIEVPRRGQLIRVLYHEISRILSHLLNVTTQAMDVGA 127
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHA Y+RPGGV++DLP
Sbjct: 128 LTPPLWGFEEREKLMVFYERASGSRMHANYFRPGGVHQDLPP------------------ 169
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D IE + + F + +D+ + LL+ NRI+K R V IG V+ ++A + GF+G
Sbjct: 170 -------KLIDDIEAWCDPFLRVVDDLDRLLSLNRIFKARNVDIGRVTLDQAWAWGFSGV 222
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLRK QPY+ Y ++FDIPIG+NGD YDRYL+R+EEMRQS +I+KQCI+ L
Sbjct: 223 MVRGSGAAWDLRKAQPYDCYAEMDFDIPIGRNGDCYDRYLIRMEEMRQSVRIMKQCIEKL 282
Query: 580 RS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
S GPV+ +NK+ P R MK +ME LIHHFKL+TEGF+VP GEIY VE PKGEF
Sbjct: 283 NSPDGGGPVMVQDNKVAPPRRGEMKRSMEALIHHFKLYTEGFHVPAGEIYVAVEAPKGEF 342
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G++LVSDG NK Y+ KIRSPGFAHLQ++ + GH+++DV I+G+ DIVFGE+DR
Sbjct: 343 GVFLVSDGTNKAYKCKIRSPGFAHLQAMDFLCRGHLLADVSAILGSLDIVFGEVDR 398
>gi|300122799|emb|CBK23814.2| unnamed protein product [Blastocystis hominis]
Length = 410
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 223/401 (55%), Positives = 296/401 (73%), Gaps = 27/401 (6%)
Query: 293 AAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEH 352
A HGVLRLILEL GE+V+KADPHIG LHR TEKL E +TYLQ+LPY DRLDY++M+ NEH
Sbjct: 37 ATHGVLRLILELRGEIVQKADPHIGFLHRGTEKLIENKTYLQALPYFDRLDYIAMLENEH 96
Query: 353 AYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLLYAFRERED 412
YV+A+EKLL K+P+RAQYIRV+F EITR++NHL+ +GSH+LDIG+ V+++ F ERE
Sbjct: 97 CYVLAVEKLLQCKVPLRAQYIRVIFAEITRIINHLIGLGSHALDIGSTTVIIWLFEEREK 156
Query: 413 LLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENRQGSLLDFI 472
LL+ YE +GARMHA Y+RPGGV +D+P LL+ +
Sbjct: 157 LLEFYERATGARMHANYFRPGGVRQDIPL-------------------------GLLNDL 191
Query: 473 EDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGSGVKWDLRK 532
F N F +D+ E LLT+NRIW++RLV IGV++ + AL + TG +LR +GVKWDLRK
Sbjct: 192 YIFCNEFNDRLDDMEELLTNNRIWRERLVDIGVITKQAALDLNLTGVLLRSTGVKWDLRK 251
Query: 533 KQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKGPVISNNNK 592
PY+ Y+ + FDIP+G NGD +DR+++RIEEMRQS +II QCI + ++GP+ S+N K
Sbjct: 252 TFPYDAYDKVQFDIPVGTNGDCFDRFIIRIEEMRQSVRIINQCINQI--SEGPIKSDNYK 309
Query: 593 ITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKPYRI 652
I+ P+++ +K +ME LI HFK+F+EGF V E+Y +E PKGEFG+YLVSDG+NKPYR
Sbjct: 310 ISIPSKVQIKQSMEALIDHFKIFSEGFKVEPNEVYCSIEAPKGEFGVYLVSDGSNKPYRC 369
Query: 653 KIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++S GF HLQSL + GH+I+DV T+IG+ DIVFG+IDR
Sbjct: 370 HLKSSGFIHLQSLDYLTRGHLIADVTTVIGSLDIVFGDIDR 410
>gi|85374162|ref|YP_458224.1| NADH dehydrogenase subunit D [Erythrobacter litoralis HTCC2594]
gi|122544413|sp|Q2NA64.1|NUOD_ERYLH RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|84787245|gb|ABC63427.1| NADH-quinone oxidoreductase chain D [Erythrobacter litoralis
HTCC2594]
Length = 403
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 219/414 (52%), Positives = 296/414 (71%), Gaps = 26/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
I +Y +NFGPQHPAAHGVLR+I+EL+GE++ + DPH+GLLHR TEKL E +TYLQ+LPY
Sbjct: 16 ITNYTINFGPQHPAAHGVLRMIMELDGEIIERVDPHVGLLHRGTEKLIEHKTYLQALPYF 75
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDY S +C EH+YV+AIEKLLNI++P RAQY+RV+F E+TR+ NH++ +G+H LD+GA
Sbjct: 76 DRLDYCSPLCMEHSYVLAIEKLLNIEVPERAQYLRVLFAELTRISNHMLNLGAHVLDVGA 135
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
L+ F RED ++ +E SGARMH A++RPGGV++D+PE +
Sbjct: 136 FTPNLWMFELREDCMNFFERASGARMHMAWFRPGGVHQDVPEKL---------------- 179
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D E R P+ + +L+ DNRI+KQR V I VVS + A+ GF+GP
Sbjct: 180 --------LVDIGEWLDTRLPELFGDAMSLVLDNRIFKQRNVDIAVVSKDDAVKWGFSGP 231
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+R +G+ WDLRK QPY++Y+ + FDIP+G N D YDR+ VR++E+ +S KIIKQC+ +
Sbjct: 232 MIRAAGIPWDLRKSQPYDVYDRMEFDIPVGTNSDCYDRFSVRVKEVYESAKIIKQCLAQM 291
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+GP+ S + K++ P+R MK +ME LIHHFKL+TEGF+VP GE+Y E PKGEFG+
Sbjct: 292 --PQGPIASTDGKVSPPSRGRMKQSMEALIHHFKLYTEGFHVPAGEVYVATESPKGEFGV 349
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLV+DG NKPYR KIR F+HLQ++ M GHM+ D I+G D+VFGE DR
Sbjct: 350 YLVADGTNKPYRCKIRPTAFSHLQAMDFMSKGHMLPDATAILGAIDVVFGECDR 403
>gi|260426567|ref|ZP_05780546.1| NADH dehydrogenase (quinone), d subunit [Citreicella sp. SE45]
gi|260421059|gb|EEX14310.1| NADH dehydrogenase (quinone), d subunit [Citreicella sp. SE45]
Length = 410
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 224/417 (53%), Positives = 302/417 (72%), Gaps = 28/417 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 20 KIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNLPY 79
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV M EHA+ +AIE+L +++P RAQ IRV++ EI R+LNHL+ + + ++D+G
Sbjct: 80 FDRLDYVGTMNQEHAWCIAIERLTGVEVPRRAQLIRVLYCEIGRILNHLLNVTTQAMDVG 139
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE GAR+HAAY+RPGGV++DLP
Sbjct: 140 ALTPPLWGFEEREKLMVFYERACGARLHAAYFRPGGVHQDLPP----------------- 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L+D I+ + ++FP + + + LLT+NRI+KQR IGV++ + G++G
Sbjct: 183 --------KLIDDIDAWCDQFPARLQDIDDLLTENRIFKQRNADIGVITEQDIQEHGYSG 234
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG+ WDLR+ QPYE Y+ F IP+GKNGD YDRYL R+ EMR+S KI+KQ ++
Sbjct: 235 VMVRGSGLAWDLRRAQPYECYDEFEFKIPVGKNGDCYDRYLCRMAEMRESVKIMKQAVEK 294
Query: 579 LR--SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
LR N+G V++ KIT P R MK++ME LIHHFKL+TEGF+VP GE+Y+ VE PKGE
Sbjct: 295 LRMPENQGDVLA-RGKITPPKRSEMKTSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGE 353
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YLV+DG+NKPYR K+R+PGF HLQS+ + GH ++DV I+G+ DIVFGE+DR
Sbjct: 354 FGVYLVADGSNKPYRAKLRAPGFLHLQSMDYVCKGHQLADVAAILGSLDIVFGEVDR 410
>gi|431805607|ref|YP_007232508.1| NADH-ubiquinone oxidoreductase subunit D [Liberibacter crescens
BT-1]
gi|430799582|gb|AGA64253.1| NADH-ubiquinone oxidoreductase chain D [Liberibacter crescens BT-1]
Length = 396
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 227/416 (54%), Positives = 303/416 (72%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E +T+LQ++PY
Sbjct: 6 LRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIETKTFLQAVPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHAY +A+E LL I+IPIR + IRV++ EI R+L+HL+ + + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAYALAVEGLLKIEIPIRGKLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SG+RMHAAY+RPGGV++DLP
Sbjct: 126 LTPPLWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDLPH------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L++ I + + F K +D+ + LLT+NRI+KQR V IG+V + A GF+G
Sbjct: 168 -------QLVEDIGIWCDPFLKVLDDIDDLLTENRIFKQRNVDIGIVKLDDAWGWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLRK QPYE Y +FDIP+GKNGD YDRYLVR+ EMR+S KII+QC+ L
Sbjct: 221 MVRGSGAVWDLRKSQPYECYEDFDFDIPVGKNGDCYDRYLVRMIEMRESIKIIRQCVNRL 280
Query: 580 RSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+ G V S ++K+ P R +MK++ME LIHHFKL+TEG++VP GEIY+ VE PKGEF
Sbjct: 281 LGDAKVGSVSSLDSKVVPPKREDMKTSMEALIHHFKLYTEGYHVPAGEIYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YL++DG NKPYR KIRSPG+AHLQ++ + GH ++DV I+G+ DIVFGE+DR
Sbjct: 341 GVYLIADGGNKPYRCKIRSPGYAHLQAMDFLCKGHQLADVAAILGSLDIVFGEVDR 396
>gi|321264860|ref|XP_003197147.1| NADH-ubiquinone oxidoreductase [Cryptococcus gattii WM276]
gi|317463625|gb|ADV25360.1| NADH-ubiquinone oxidoreductase, putative [Cryptococcus gattii
WM276]
Length = 455
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 226/415 (54%), Positives = 293/415 (70%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
E++ + +NFGPQHPAAHGVLRLILEL GE + +ADPHIGLLHR TEKL E + Y Q+LPY
Sbjct: 68 EMRHFTVNFGPQHPAAHGVLRLILELNGEEILRADPHIGLLHRGTEKLIEYKNYTQALPY 127
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE Y +A+E+LLNI++P RA++IR +F EITR+LNHLM + +H++D+G
Sbjct: 128 FDRLDYVSMMTNELCYSIAVERLLNIEVPERAKWIRTLFGEITRVLNHLMAVLTHAMDVG 187
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGARMHAAY RPGGV DLP
Sbjct: 188 ALTPFLWGFEEREKLMEFYERVSGARMHAAYVRPGGVAFDLPH----------------- 230
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F +DE E ++T NRIWKQR +GIG V+ ++AL F+G
Sbjct: 231 --------GLLDDIFKWATQFSSRVDEIEEVVTGNRIWKQRTIGIGPVTAQQALDYSFSG 282
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ WD+RK PY+ Y+ + FD+PIGKNGD YDRYL R++E R+S +II QC+
Sbjct: 283 VMLRGSGIPWDIRKVAPYDAYDKVEFDVPIGKNGDCYDRYLCRVQEFRESLRIIGQCLN- 341
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ G +++KI P R +MK +ME LIHHFK+F+EG+ VP GE Y+ +E PKGE G
Sbjct: 342 -KIPDGAYKIDDHKIVPPPRASMKESMESLIHHFKIFSEGYSVPPGETYAAIEAPKGEMG 400
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG+N+PY+ KIR+PGFAHL M+ H + D V IIGT D+VFGE+DR
Sbjct: 401 VYLVSDGSNRPYKCKIRAPGFAHLAGADFMMRHHFLPDAVAIIGTMDLVFGEVDR 455
>gi|15130886|emb|CAC48191.1| NADH dehydrogenase subunit 7 [Leucobryum glaucum]
Length = 364
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 230/394 (58%), Positives = 284/394 (72%), Gaps = 33/394 (8%)
Query: 295 HGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAY 354
HGV RL+LE+ GEVV +A+PHIGLLHR TEKL E +TYLQ+LPY DRLDYVSMM EHAY
Sbjct: 1 HGVSRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMAQEHAY 60
Query: 355 VMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLLYAFREREDLL 414
+A+EKL N ++P+RAQYIRV+F EITR+LNHL+ + +H++D+GA+ L+AF ERE LL
Sbjct: 61 SLAVEKLCNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMDVGALTPFLWAFEEREKLL 120
Query: 415 DCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENRQGSLLDFIED 474
+ YE VSGARMHA+Y RPGGV +D+P L ED
Sbjct: 121 EFYERVSGARMHASYIRPGGVAQDMP----------------------------LGLSED 152
Query: 475 ---FTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGSGVKWDLR 531
FT +F IDE E +LT+NRIWKQRLV IG V+ ++AL GF+G MLRGSGV WDLR
Sbjct: 153 IFLFTQQFASRIDEIEEMLTNNRIWKQRLVDIGTVTAQQALDWGFSGVMLRGSGVCWDLR 212
Query: 532 KKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKGPVISNNN 591
K PY++YN L FD+P+G GD YDRY +RIEEMRQS +II QC+ + S G + ++N
Sbjct: 213 KSAPYDVYNQLIFDVPVGTRGDCYDRYCIRIEEMRQSIRIIMQCLNQMPS--GMIKADNR 270
Query: 592 KITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKPYR 651
K+ P+R MK +ME LIHHFKL+TEGF VP Y+ VE PKGEFG++LVS+G N+PYR
Sbjct: 271 KLCPPSRSQMKQSMESLIHHFKLYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGTNRPYR 330
Query: 652 IKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQD 685
KIR+PGFAHLQ L M HM+SDVVTIIGTQD
Sbjct: 331 CKIRAPGFAHLQGLDFMSKHHMLSDVVTIIGTQD 364
>gi|114764721|ref|ZP_01443906.1| NADH dehydrogenase subunit D [Pelagibaca bermudensis HTCC2601]
gi|114542921|gb|EAU45942.1| NADH dehydrogenase subunit D [Pelagibaca bermudensis HTCC2601]
Length = 410
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 222/417 (53%), Positives = 302/417 (72%), Gaps = 28/417 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 20 QIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNLPY 79
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV M EHA+ +AIE+L +++P RAQ IRV++ EI R+LNHL+ + + ++D+G
Sbjct: 80 FDRLDYVGTMNQEHAWCLAIERLTGVEVPRRAQLIRVLYCEIGRILNHLLNVTTQAMDVG 139
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE GAR+HAAY+RPGGV++DLP
Sbjct: 140 ALTPPLWGFEEREKLMIFYERACGARLHAAYFRPGGVHQDLPP----------------- 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L++ ++ + + FP + + + LLT+NRI+KQR IGVV+ + GF+G
Sbjct: 183 --------ELIEDLDTWCDEFPARLQDIDDLLTENRIFKQRNADIGVVTEDDIQKYGFSG 234
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
++RGSG+ WDLR+ QPYE Y+ F IP+GKNGD YDRYL R+ EMR+S KI+KQ ++
Sbjct: 235 VLVRGSGLAWDLRRAQPYECYDEFEFQIPVGKNGDCYDRYLCRMAEMRESVKIMKQALEK 294
Query: 579 LR--SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
LR N+G V++ K+T P R MK++ME LIHHFKL+TEGF+VP GE+Y+CVE PKGE
Sbjct: 295 LRLPENQGDVLA-RGKVTPPKRSEMKTSMEALIHHFKLYTEGFHVPEGEVYACVEAPKGE 353
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YLV+DG+NKPYR K+R+PGF HLQ++ + GH ++DV I+G+ DIVFGE+DR
Sbjct: 354 FGVYLVADGSNKPYRAKLRAPGFLHLQAMDYICKGHQLADVAAILGSLDIVFGEVDR 410
>gi|341884803|gb|EGT40738.1| CBN-GAS-1 protein [Caenorhabditis brenneri]
Length = 384
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 231/409 (56%), Positives = 287/409 (70%), Gaps = 27/409 (6%)
Query: 285 LNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDY 344
LNFGPQHPAAHGVLRL+L+LEGEV+ KA PHIGLLHRATEKL E +TY Q+LPY DRLDY
Sbjct: 3 LNFGPQHPAAHGVLRLVLKLEGEVIIKAIPHIGLLHRATEKLIEHKTYTQALPYFDRLDY 62
Query: 345 VSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLL 404
VSMMCNE A+ +A+EKLL I IP RA+YIR + E+TR+ NH+M I +H+LD+GAM
Sbjct: 63 VSMMCNEQAWSLAVEKLLGIDIPPRAKYIRTLMGELTRIQNHIMGITTHALDVGAMTPFF 122
Query: 405 YAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENR 464
+ F ERE L + E VSGARMHA Y RPGGV D+P
Sbjct: 123 WMFEEREKLFEFSERVSGARMHANYVRPGGVAWDMPI----------------------- 159
Query: 465 QGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGS 524
L+D I D+ +FP+ IDE E +LT+NRIWK R + IG+VS AL+ GFTG M+RGS
Sbjct: 160 --GLMDDIYDWAIKFPERIDELEDMLTENRIWKARTIDIGLVSAADALNWGFTGVMVRGS 217
Query: 525 GVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKG 584
G+K D+RK QPY+ Y+ + FD+PIG GD YDRYL RIEEMRQS I+ QC+ + G
Sbjct: 218 GIKQDVRKTQPYDAYDQVEFDVPIGTKGDCYDRYLCRIEEMRQSLNIVHQCLN--KMPAG 275
Query: 585 PVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSD 644
+ +++K+ P R MK NME LIHHFK FTEGF VP G Y +E PKGEFG+YLV+D
Sbjct: 276 EIKVDDHKVVPPKRAEMKENMESLIHHFKFFTEGFQVPPGASYVPIEAPKGEFGVYLVAD 335
Query: 645 GANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G KPYR IR+PGFAHL ++ ++ +I+D+V +IGT DIVFGE+DR
Sbjct: 336 GTGKPYRCYIRAPGFAHLAAIHDVCYMSLIADIVAVIGTMDIVFGEVDR 384
>gi|83953910|ref|ZP_00962631.1| NADH dehydrogenase delta subunit [Sulfitobacter sp. NAS-14.1]
gi|83841855|gb|EAP81024.1| NADH dehydrogenase delta subunit [Sulfitobacter sp. NAS-14.1]
Length = 407
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 228/417 (54%), Positives = 302/417 (72%), Gaps = 27/417 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 16 KIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNLPY 75
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +AIEKL +++P RA IRV++ EI R+L+HL+ + + ++D+G
Sbjct: 76 FDRLDYVAPMNQEHAWCLAIEKLTGVEVPRRASLIRVLYSEIGRILSHLLNVTTQAMDVG 135
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F EREDL+ YE GAR+HAAY+RPGGV++DLP
Sbjct: 136 ALTPPLWGFEEREDLMIFYERACGARLHAAYFRPGGVHQDLPP----------------- 178
Query: 459 ILNENRQGSLLDFIEDFTNRFPKN-IDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
+LLD IE +T++F + + + LLT+NRI+KQR IG+VS + GF+
Sbjct: 179 --------ALLDDIEAWTHKFLSGFMVDVDQLLTENRIFKQRNADIGIVSEQDIQDWGFS 230
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
G M+RGSG+ WDLR+ QPYE Y+ +F IP G NGD YDRYLVR+EEMRQS II+Q I+
Sbjct: 231 GVMVRGSGLAWDLRRAQPYECYDEFDFQIPTGVNGDCYDRYLVRMEEMRQSTYIIQQAIE 290
Query: 578 WLRSNKGPV-ISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
LR+ +G + KIT P+R MK++ME LIHHFKL+TEGF+VP GE+Y VE PKGE
Sbjct: 291 KLRAPEGQGDVLARGKITPPSRTAMKTDMESLIHHFKLYTEGFHVPAGEVYCAVEAPKGE 350
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YLV+DG+NKPYR K+R+PG+ HLQ++ + GH ++DV IIGT DIVFGE+DR
Sbjct: 351 FGVYLVADGSNKPYRAKLRAPGYLHLQAMDYIAKGHQLADVAAIIGTMDIVFGEVDR 407
>gi|83942671|ref|ZP_00955132.1| NADH dehydrogenase delta subunit [Sulfitobacter sp. EE-36]
gi|83846764|gb|EAP84640.1| NADH dehydrogenase delta subunit [Sulfitobacter sp. EE-36]
Length = 407
Score = 470 bits (1210), Expect = e-129, Method: Compositional matrix adjust.
Identities = 228/417 (54%), Positives = 302/417 (72%), Gaps = 27/417 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 16 KIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNLPY 75
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +AIEKL +++P RA IRV++ EI R+L+HL+ + + ++D+G
Sbjct: 76 FDRLDYVAPMNQEHAWCLAIEKLTGVEVPRRASLIRVLYSEIGRILSHLLNVTTQAMDVG 135
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F EREDL+ YE GAR+HAAY+RPGGV++DLP
Sbjct: 136 ALTPPLWGFEEREDLMIFYERACGARLHAAYFRPGGVHQDLPP----------------- 178
Query: 459 ILNENRQGSLLDFIEDFTNRFPKN-IDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
+LLD IE +T++F + + + LLT+NRI+KQR IG+VS + GF+
Sbjct: 179 --------ALLDDIEAWTHKFLSGFMVDVDQLLTENRIFKQRNADIGIVSEQDIQDWGFS 230
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
G M+RGSG+ WDLR+ QPYE Y+ +F IP G NGD YDRYLVR+EEMRQS II+Q I+
Sbjct: 231 GVMVRGSGLAWDLRRAQPYECYDEFDFQIPTGVNGDCYDRYLVRMEEMRQSTYIIQQAIE 290
Query: 578 WLRSNKGPV-ISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
LR+ +G + KIT P+R MK++ME LIHHFKL+TEGF+VP GE+Y VE PKGE
Sbjct: 291 KLRAPEGQGDVLARGKITPPSRTAMKTDMESLIHHFKLYTEGFHVPAGEVYCAVEAPKGE 350
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YLV+DG+NKPYR K+R+PG+ HLQ++ + GH ++DV IIGT DIVFGE+DR
Sbjct: 351 FGVYLVADGSNKPYRAKLRAPGYLHLQAMDYVAKGHQLADVAAIIGTMDIVFGEVDR 407
>gi|156541952|ref|XP_001600518.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Nasonia vitripennis]
Length = 478
Score = 470 bits (1209), Expect = e-129, Method: Compositional matrix adjust.
Identities = 224/417 (53%), Positives = 297/417 (71%), Gaps = 27/417 (6%)
Query: 277 VIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSL 336
V IK+ ++NFGPQHP+AHG LRL+LEL+GE V ADPHIGLLHR +EKL E +TY Q+L
Sbjct: 89 VKRIKNVRVNFGPQHPSAHGCLRLVLELDGEYVVSADPHIGLLHRGSEKLMEYKTYTQAL 148
Query: 337 PYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLD 396
PY DR DYVS++ NE + +A+EKLLNI IP+RA+YIR MF E++RL+NH+M I H LD
Sbjct: 149 PYFDRFDYVSVLSNEQCFALAVEKLLNIDIPLRAKYIRTMFVELSRLMNHMMSIACHCLD 208
Query: 397 IGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKA 456
GA+ + F ERE + + +E SGARMHA Y RPGGV DLP
Sbjct: 209 TGALSPFFWVFEEREKIYEFHERASGARMHACYVRPGGVAVDLPL--------------- 253
Query: 457 TKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGF 516
LLD I DF +F + +DE E LLT+NRIWKQR VGIGV+S E AL+ G
Sbjct: 254 ----------GLLDDIHDFVAKFSERMDEVEDLLTENRIWKQRTVGIGVLSAEEALNYGC 303
Query: 517 TGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCI 576
+G M+R G+KWDLRK PY+ Y+ ++FD+P+ NGD+YDRYLVR+ EMRQS +II+QC+
Sbjct: 304 SGMMIRACGIKWDLRKSMPYDAYDCVDFDVPVAWNGDTYDRYLVRMHEMRQSLRIIEQCL 363
Query: 577 KWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
+ + G V ++ KI+ P R MK +ME LIHHFKLF+EG++VP G Y+ VE PKGE
Sbjct: 364 NQMPA--GEVRVDDFKISPPPRAEMKLSMEALIHHFKLFSEGYHVPPGATYTAVEAPKGE 421
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YLVSDG+++PYR+++R+PGF HL L ++ G M++DVV+++ T +IVFG++DR
Sbjct: 422 FGVYLVSDGSSRPYRLRVRAPGFPHLALLKKLAPGLMLADVVSVLSTLEIVFGDVDR 478
>gi|15130888|emb|CAC48237.1| NADH dehydrogenase subunit 7 [Ulota crispa]
Length = 364
Score = 470 bits (1209), Expect = e-129, Method: Compositional matrix adjust.
Identities = 230/394 (58%), Positives = 284/394 (72%), Gaps = 33/394 (8%)
Query: 295 HGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAY 354
HGVLRL+LE+ GEVV +A+PHIGLLHR TEKL E +TYLQ+LPY DRLDYVSMM EHAY
Sbjct: 1 HGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMAQEHAY 60
Query: 355 VMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLLYAFREREDLL 414
+A EKL N ++P+RAQYIRV+F EITR+LNHL+ + +H++D+GA+ L+AF ERE LL
Sbjct: 61 SLAAEKLCNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMDVGALTPFLWAFEEREKLL 120
Query: 415 DCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENRQGSLLDFIED 474
+ YE VSGARMHA+Y RPGGV +D+P L ED
Sbjct: 121 EFYERVSGARMHASYIRPGGVAQDMP----------------------------LGLSED 152
Query: 475 ---FTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGSGVKWDLR 531
FT +F IDE E +LT+NRIWKQRLV IG V+ ++AL GF+G MLRGSGV WDLR
Sbjct: 153 IFLFTQQFASRIDEIEEMLTNNRIWKQRLVDIGTVTAQQALDWGFSGVMLRGSGVCWDLR 212
Query: 532 KKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKGPVISNNN 591
K PY++YN L FD+P+G GD YDRY +RIEEMRQS +II QC+ + S G + +++
Sbjct: 213 KSAPYDVYNQLIFDVPVGTRGDCYDRYCIRIEEMRQSIRIIMQCLNQMPS--GMIKADDR 270
Query: 592 KITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKPYR 651
K+ P+R MK +ME LIHHFKL+TEGF VP Y+ VE PKGEFG++LVS+G N+PYR
Sbjct: 271 KLCPPSRSQMKQSMESLIHHFKLYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGTNRPYR 330
Query: 652 IKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQD 685
KIR+PGFAHLQ L M HM+SDVVTIIGTQD
Sbjct: 331 CKIRAPGFAHLQGLDFMSKHHMLSDVVTIIGTQD 364
>gi|150866110|ref|XP_001385597.2| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Scheffersomyces stipitis CBS 6054]
gi|149387366|gb|ABN67568.2| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Scheffersomyces stipitis CBS 6054]
Length = 474
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 227/415 (54%), Positives = 294/415 (70%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ + +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E +TY+Q+LPY
Sbjct: 87 KIRHFTINFGPQHPAAHGVLRLILELHGEEIVRADPHVGLLHRGTEKLIESKTYMQALPY 146
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLN++IP+RA+YIR +F EITR+LNH M + SH +D+G
Sbjct: 147 FDRLDYVSMMTNELVFALAVEKLLNVEIPLRAKYIRTLFGEITRILNHCMSVLSHIMDVG 206
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+ L+ F ERE L++ YE VSGAR+H AY RPGGV +DLP
Sbjct: 207 GLTPFLWGFEEREKLMEFYERVSGARLHTAYVRPGGVSQDLPV----------------- 249
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E L+TDNRIWK R V +GVVS E AL+ +G
Sbjct: 250 --------GLLDDIYMWATQFGDRIDETEELVTDNRIWKDRTVDVGVVSAEDALNYSLSG 301
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ +D+RK QPY+ Y+L++FDI +G NGD YDRYL+R+ E RQS +II QCI
Sbjct: 302 VMLRGSGIPFDIRKSQPYDAYDLVDFDIAVGMNGDCYDRYLIRMAEFRQSLRIIFQCIND 361
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ +GPV + KI+ P R MK +ME LIHHF LFT+G+ VP GE Y+ +E PKGE
Sbjct: 362 I--PEGPVKVEDYKISPPPRSVMKEDMEALIHHFLLFTKGYAVPQGETYTAIEAPKGEMA 419
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDG+ +PYR KIR+PGFAHL + + G++++D V IIGT D+VFGE+DR
Sbjct: 420 VYVVSDGSERPYRCKIRAPGFAHLGAFDHISRGNLLADAVAIIGTMDLVFGEVDR 474
>gi|149235688|ref|XP_001523722.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Lodderomyces
elongisporus NRRL YB-4239]
gi|146452701|gb|EDK46957.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Lodderomyces
elongisporus NRRL YB-4239]
Length = 483
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 223/424 (52%), Positives = 297/424 (70%), Gaps = 27/424 (6%)
Query: 270 PFRKDFPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQ 329
P + +++ + +NFGPQHPAAHGVLRLILEL GE + ++DPH+GLLHR TEKL E
Sbjct: 87 PMKTKTQNTKVRHFTINFGPQHPAAHGVLRLILELHGEEIIRSDPHVGLLHRGTEKLIET 146
Query: 330 RTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMW 389
+TY+Q+LPY DRLDYVSMM NE + +A+EKLLN++IP+RA+YIR +F EITR+LNH M
Sbjct: 147 KTYMQALPYFDRLDYVSMMTNEQVFALAVEKLLNVEIPLRAKYIRTLFGEITRVLNHCMS 206
Query: 390 IGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSS 449
+ +H +D+G + L+ F ERE L++ YE VSGAR+H+AY RPGGV +DLP
Sbjct: 207 VLTHIMDVGGLTPFLWGFEEREKLMEFYERVSGARLHSAYVRPGGVSQDLP--------- 257
Query: 450 IIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPE 509
LLD I + +F IDE E L TDNRIWK+R G+GVV+ +
Sbjct: 258 ----------------AGLLDDIYMWATQFGDRIDEIEELCTDNRIWKERTEGVGVVTAD 301
Query: 510 RALSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSN 569
AL+ +G MLRGSG+ +D+RK QPY+ Y+L++FDI +G NGD YDRYL+R+ E RQS
Sbjct: 302 DALNYSLSGVMLRGSGIPFDVRKSQPYDAYDLVDFDIAVGLNGDCYDRYLIRMAEFRQSL 361
Query: 570 KIIKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSC 629
+II QCI + +GPV + KI+ P+R MK +ME LIHHF LFT+G+ VP GE Y+
Sbjct: 362 RIIFQCINDM--PQGPVKVEDYKISPPSRAIMKEDMEALIHHFLLFTKGYAVPQGETYTA 419
Query: 630 VEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFG 689
+E PKGE +Y+VSDG+ +PYR KIR+PGFAHL + + G +++D V IIGT D+VFG
Sbjct: 420 IEAPKGEMAVYVVSDGSERPYRCKIRAPGFAHLGAFDHIARGELLADAVAIIGTMDLVFG 479
Query: 690 EIDR 693
E+DR
Sbjct: 480 EVDR 483
>gi|418937591|ref|ZP_13491211.1| NAD(P)H-quinone oxidoreductase subunit H [Rhizobium sp. PDO1-076]
gi|375055699|gb|EHS51939.1| NAD(P)H-quinone oxidoreductase subunit H [Rhizobium sp. PDO1-076]
Length = 396
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 226/416 (54%), Positives = 301/416 (72%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E +TYLQ+LPY
Sbjct: 6 VRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIETKTYLQALPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHAY MA+EKLL ++IPIR Q IRV++ EI R+L+HL+ + + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAYSMAVEKLLGLQIPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE GARMH+AY RPGGV++DLP
Sbjct: 126 LTPPLWGFEEREKLMVFYERACGARMHSAYIRPGGVHQDLPH------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L++ I + + F K +D+ + LLT NRI+KQR V IGVV+ + + GF+G
Sbjct: 168 -------ELVEDIGKWCDPFLKTVDDIDDLLTGNRIFKQRNVDIGVVTLDDCWAWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLRK QPYE Y L+FD+ +GKNGD YDRYL+R+ EMR+S KI+KQC+ L
Sbjct: 221 MVRGSGAAWDLRKSQPYECYADLDFDLMVGKNGDCYDRYLIRMFEMRESVKIMKQCVNRL 280
Query: 580 --RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+ GP+ + + K+ P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGEF
Sbjct: 281 LGDARTGPISALDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPEGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG+NKPYR KIR+PG+AHLQ++ + GH ++DV I+G+ DIVFGE+DR
Sbjct: 341 GVYLVSDGSNKPYRCKIRAPGYAHLQAMDFICRGHQLADVSAILGSLDIVFGEVDR 396
>gi|260947394|ref|XP_002617994.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Clavispora lusitaniae ATCC 42720]
gi|238847866|gb|EEQ37330.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Clavispora lusitaniae ATCC 42720]
Length = 472
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 226/415 (54%), Positives = 294/415 (70%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ + +NFGPQHPAAHGVLRLILEL GE + ++DPH+GLLHR TEKL E +TY+Q+LPY
Sbjct: 85 KIRHFTINFGPQHPAAHGVLRLILELHGEEIVRSDPHVGLLHRGTEKLIESKTYMQALPY 144
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLN+++P+RA+YIR MF EITR+LNH M + SH +D+G
Sbjct: 145 FDRLDYVSMMTNELVFALAVEKLLNVEVPLRAKYIRTMFGEITRILNHCMSVLSHIMDVG 204
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+ L+ F ERE L++ YE VSGAR+H AY RPGGV +DLP
Sbjct: 205 GLTPFLWGFEEREKLMEFYERVSGARLHTAYVRPGGVSQDLP------------------ 246
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E L+TDNRIWK R +GVV+ E AL+ +G
Sbjct: 247 -------AGLLDDIYMWATQFGDRIDETEELVTDNRIWKNRTQDVGVVTAEDALNYSMSG 299
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV +D+RK QPY+ Y L++FD+ +G NGD YDRYLVR+ E RQS +II+QCI
Sbjct: 300 VMLRGSGVPYDIRKAQPYDAYELVDFDVAVGLNGDCYDRYLVRMVEFRQSLRIIEQCIND 359
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ +GPV + KI+ P R MK +ME LIHHF LFT+G+ VP GE Y+ +E PKGE G
Sbjct: 360 M--PEGPVKVEDYKISPPPRSLMKEDMEALIHHFLLFTKGYAVPQGETYTVIEAPKGEMG 417
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDG+ +PYR KIR+PGFAHL + + G++++D V IIGT D+VFGE+DR
Sbjct: 418 VYVVSDGSERPYRCKIRAPGFAHLGAFDHVARGNLLADAVAIIGTMDLVFGEVDR 472
>gi|329889335|ref|ZP_08267678.1| NADH-quinone oxidoreductase chain 4 [Brevundimonas diminuta ATCC
11568]
gi|328844636|gb|EGF94200.1| NADH-quinone oxidoreductase chain 4 [Brevundimonas diminuta ATCC
11568]
Length = 392
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/415 (55%), Positives = 299/415 (72%), Gaps = 28/415 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
+ + +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E RTYLQ++PY+D
Sbjct: 4 RKFTINFGPQHPAAHGVLRLVLELDGELVTRVDPHIGLLHRGTEKLMEARTYLQNIPYLD 63
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYVS M EHA+ +AIE+LL + +P R Q IRV++ E+ R+LNHL+ ++D+GA+
Sbjct: 64 RLDYVSPMNQEHAFCLAIERLLGLDVPYRGQLIRVLYSEMGRILNHLLNATMQAMDVGAL 123
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDL-PEIMPQYKSSIIRNNKATKI 459
L+ ERE L+ YE GAR+HA Y+RPGGV++DL PE
Sbjct: 124 TPPLWGHEEREKLMVFYERACGARLHANYFRPGGVHQDLTPE------------------ 165
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I + FP + + E+L+T+NRI+KQR V IGVVS E AL+ GF+G
Sbjct: 166 --------LIDDIGRWCAEFPAKLADIESLVTENRIFKQRNVDIGVVSKENALAWGFSGV 217
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGS + WDLRK QPY+ Y + FDI +GKNGD +DRYLVR+EEMRQS +I++QCI L
Sbjct: 218 MLRGSDIAWDLRKAQPYDCYADMEFDIAVGKNGDCWDRYLVRVEEMRQSVRIMEQCIHKL 277
Query: 580 RSNKG-PVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
R+ G PV+S ++K+T P R MK +ME LIHHFKL+TEGF P GE+Y+ VE PKGEFG
Sbjct: 278 RNCPGEPVLSEDHKVTPPRRGEMKRSMEALIHHFKLYTEGFKTPEGEVYAAVEAPKGEFG 337
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG NKPYR+K+ +PGF HLQ++ M GHM++DV I+G+ D+VFGE+DR
Sbjct: 338 VYLVSDGTNKPYRVKLSAPGFRHLQAMDWMNRGHMLADVSAILGSLDMVFGEVDR 392
>gi|406973534|gb|EKD96934.1| hypothetical protein ACD_23C01179G0003 [uncultured bacterium]
Length = 294
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 216/294 (73%), Positives = 251/294 (85%)
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M V+L+AFREREDLLD YEAVSGARMHAAY RPGGVYRDLP+ MP++ + IR+ K+T+
Sbjct: 1 MTVMLFAFREREDLLDVYEAVSGARMHAAYVRPGGVYRDLPDTMPRHSPNKIRSAKSTER 60
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LN R GSLLDFI+DFT RFP + EY TLLTDNRIWKQR VGIGVV+PERAL++GFTGP
Sbjct: 61 LNHARDGSLLDFIDDFTQRFPTYLAEYHTLLTDNRIWKQRTVGIGVVTPERALNLGFTGP 120
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG+ WDLRKKQPYEIY+ L+FDIP+GK GD+YDRYLVR+EEM+QSN+IIKQC+ WL
Sbjct: 121 MLRGSGIAWDLRKKQPYEIYDRLDFDIPVGKTGDTYDRYLVRMEEMKQSNRIIKQCVDWL 180
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
R N GPVI++N+KI P R +MK+NME LIHHFKLFTEGF VP GE Y+ +EHPKGEFGI
Sbjct: 181 RVNPGPVITDNHKIAPPDRESMKTNMEALIHHFKLFTEGFSVPEGEAYAAIEHPKGEFGI 240
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YL+SDGANKPYR+KIR P F HL +L EM GHMI+D V IIGT DIVFGE+DR
Sbjct: 241 YLISDGANKPYRLKIRPPAFVHLSALDEMGKGHMIADAVAIIGTMDIVFGEVDR 294
>gi|227821620|ref|YP_002825590.1| NADH dehydrogenase subunit D [Sinorhizobium fredii NGR234]
gi|227340619|gb|ACP24837.1| NADH dehydrogenase I chain D [Sinorhizobium fredii NGR234]
Length = 396
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 223/416 (53%), Positives = 299/416 (71%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 6 VRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIEAKTYLQAVPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +A+E+L ++PIR Q IRV++ EI R+L+HL+ + + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAFALAVERLTGTEVPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE GARMH+AY+RPGGV++DLP
Sbjct: 126 LTPPLWGFEEREKLMVFYERACGARMHSAYFRPGGVHQDLPH------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L++ I ++ F K +D+ + LLT NRI+KQR V IGVV E A + GF+G
Sbjct: 168 -------ELVEDIGNWIEPFLKTVDDIDELLTGNRIFKQRNVDIGVVKLEDAWAWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLR+ QPYE Y+ + FDIPIGKNGD YDRYL+R+ EMRQS I++QC+ L
Sbjct: 221 MVRGSGAAWDLRRAQPYECYSDMQFDIPIGKNGDCYDRYLIRMIEMRQSALIMRQCVDRL 280
Query: 580 RSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+ GPV S + KI P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGEF
Sbjct: 281 LGDAKIGPVSSLDGKIVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G++LVSDG NKPYR KIR+PG+AHLQ++ + GH ++DV ++G+ DIVFGE+DR
Sbjct: 341 GVFLVSDGTNKPYRCKIRAPGYAHLQAMDFLCRGHQLADVSAVLGSLDIVFGEVDR 396
>gi|254487142|ref|ZP_05100347.1| NADH dehydrogenase (quinone), D subunit [Roseobacter sp. GAI101]
gi|214044011|gb|EEB84649.1| NADH dehydrogenase (quinone), D subunit [Roseobacter sp. GAI101]
Length = 408
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 230/417 (55%), Positives = 300/417 (71%), Gaps = 27/417 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 17 KIRNFNINFGPQHPAAHGVLRLVLELDGEVVERCDPHIGLLHRGTEKLMESRTYLQNLPY 76
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +AIEKL +++P RA IRV++ EI R+L+HL+ + + ++D+G
Sbjct: 77 FDRLDYVAPMNQEHAWCLAIEKLTGVEVPRRASLIRVLYSEIGRILSHLLNVTTQAMDVG 136
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F EREDL+ YE GAR+HAAY+RPGGV++DLP
Sbjct: 137 ALTPPLWGFEEREDLMIFYERACGARLHAAYFRPGGVHQDLPP----------------- 179
Query: 459 ILNENRQGSLLDFIEDFTNRFPKN-IDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
+LLD IE ++++F + + + LLT+NRI+KQR IG+V+ + GF+
Sbjct: 180 --------ALLDDIEAWSHKFMSGFMVDIDKLLTENRIFKQRNADIGIVTEQDIQDWGFS 231
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
G M+RGSG+ WDLR+ QPYE Y+ +F IP G NGD YDRYLVR+EEMRQS II+Q I
Sbjct: 232 GVMVRGSGLAWDLRRAQPYECYDEFDFQIPTGVNGDCYDRYLVRMEEMRQSIFIIQQAIT 291
Query: 578 WLRSNKGPV-ISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
LR +G I KIT P+R MK++ME LIHHFKL+TEGF+VP GE+Y VE PKGE
Sbjct: 292 KLREPEGQGDILARGKITPPSRSAMKTDMESLIHHFKLYTEGFHVPAGEVYCAVEAPKGE 351
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YLV+DG+NKPYR KIR+PG+ HLQ++ M GH ++DV IIGT DIVFGE+DR
Sbjct: 352 FGVYLVADGSNKPYRAKIRAPGYLHLQAMDYMAKGHQLADVAAIIGTMDIVFGEVDR 408
>gi|393246739|gb|EJD54247.1| NADH dehydrogenase I, D subunit [Auricularia delicata TFB-10046
SS5]
Length = 404
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 222/414 (53%), Positives = 291/414 (70%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++ + +NFGPQHPAAHGVLRLILEL GE + +ADPHIGLLHR TEKL E +T+ Q+LPY
Sbjct: 18 LRHFTVNFGPQHPAAHGVLRLILELNGEEILRADPHIGLLHRGTEKLIEFKTFTQALPYF 77
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMM NE Y +A+EKLLNI++P RA++IR +F E+TR+LNHLM + +H +D+G
Sbjct: 78 DRLDYVSMMTNELVYSLAVEKLLNIEVPDRAKWIRTLFGELTRILNHLMAVLTHVMDVGG 137
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L++ YE VSGARMHAAY RPGGV DLP
Sbjct: 138 LTPFLWGFEEREKLMEFYERVSGARMHAAYVRPGGVAFDLPH------------------ 179
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD I + +F +DE E ++T NRIWK+R VG+G V+ ++AL FTG
Sbjct: 180 -------GLLDDIFKWATQFSSRVDEIEEVVTGNRIWKERTVGVGKVTAQQALDYSFTGV 232
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSGV WDLRK PY+ Y+ + FD+P+G+NGD YDRYL R++E R+S I+ QC+
Sbjct: 233 MLRGSGVPWDLRKVAPYDAYDRVEFDVPVGQNGDCYDRYLCRVQEFRESLNIVSQCLN-- 290
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G V +++K+ P R +MK +ME LIHHFK+F+EG+ VP GE Y+ +E PKGE G+
Sbjct: 291 KMPLGAVKVDDHKLVPPPRASMKESMESLIHHFKIFSEGYSVPPGETYTAIEAPKGEMGV 350
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+N+PYR +IR+PGF HL M+ H ++D V IIGT D+VFGE+DR
Sbjct: 351 YLVSDGSNRPYRCRIRAPGFPHLAGADFMMRQHFLADAVAIIGTMDLVFGEVDR 404
>gi|378825579|ref|YP_005188311.1| NADH dehydrogenase I subunit D [Sinorhizobium fredii HH103]
gi|365178631|emb|CCE95486.1| NADH dehydrogenase I chain D [Sinorhizobium fredii HH103]
Length = 396
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 224/416 (53%), Positives = 298/416 (71%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E +TYLQ++PY
Sbjct: 6 VRNFNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIEAKTYLQAIPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +A+E+L ++PIR Q IRV++ EI R+L+HL+ + + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAFALAVERLTGTEVPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE GARMH+AY RPGGV++DLP
Sbjct: 126 LTPPLWGFEEREKLMVFYERACGARMHSAYIRPGGVHQDLPH------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L++ I + + F K +D+ + LLT NRI+KQR V IGVV E A + GF+G
Sbjct: 168 -------ELVEDIGKWIDPFLKTVDDIDELLTGNRIFKQRNVDIGVVKLEDAWAWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLR+ QPYE Y+ L FDIPIGKNGD YDRYL+R+ EMRQS I++QC+ L
Sbjct: 221 MVRGSGAAWDLRRAQPYECYSDLQFDIPIGKNGDCYDRYLIRMIEMRQSALIMRQCVDRL 280
Query: 580 RSNK--GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+ GPV S + KI P R MK +ME LIHHFKL+TEG++VP GE+Y+ VE PKGEF
Sbjct: 281 LGDAKVGPVSSLDGKIVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G++LVSDG NKPYR KIR+PG+AHLQ++ + GH ++DV ++G+ DIVFGE+DR
Sbjct: 341 GVFLVSDGTNKPYRCKIRAPGYAHLQAMDFLCRGHQLADVSAVLGSLDIVFGEVDR 396
>gi|340779456|ref|ZP_08699399.1| NADH dehydrogenase subunit D [Acetobacter aceti NBRC 14818]
Length = 430
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 227/414 (54%), Positives = 296/414 (71%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
I S+ LNFGPQHP+AHGVLRL+LE+EGEVV +A PHIGLLHR TEKL E +TY ++LPY
Sbjct: 44 IDSHALNFGPQHPSAHGVLRLVLEMEGEVVARAVPHIGLLHRGTEKLIEYKTYPKALPYF 103
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDY S MC EHA+ +A EKLL I+ P RA++IRV+F EITR+LNH++ + + LD GA
Sbjct: 104 DRLDYASPMCEEHAFALATEKLLGIEAPDRAKWIRVIFAEITRVLNHILNLTAMGLDCGA 163
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ + ERE LL+ +EAVSGAR HA Y+RPGGV RD+P M +
Sbjct: 164 VTPALWGYEEREKLLEFHEAVSGARFHANYFRPGGVARDMPAGMEEK------------- 210
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
I + FP ID+ E+LLT+NRIWKQR VGIGV + E+AL+ G++GP
Sbjct: 211 ------------IAAWAEEFPAWIDDLESLLTENRIWKQRTVGIGVFTSEQALAWGWSGP 258
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
LRGSGV WDLR+ QPY+ Y+ ++F+IP+ ++GD YDRYLVR+ EMR+S KIIKQ + +
Sbjct: 259 CLRGSGVPWDLRRSQPYDNYDKVDFEIPVARHGDCYDRYLVRVAEMRESVKIIKQSLAQI 318
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + + K + P R MK +ME LIHHFKLFTE ++VP G Y+ VE PKGEFG+
Sbjct: 319 KP--GAIKVQDPKFSPPPRAEMKRSMEALIHHFKLFTESYHVPPGATYTAVETPKGEFGV 376
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLV+DG+N+PYR KIR GFAHLQ++ E+ M++D V IIG+ D+VFGE+DR
Sbjct: 377 YLVADGSNRPYRCKIRPTGFAHLQAIDELSRRGMLADAVAIIGSLDLVFGEVDR 430
>gi|358335119|dbj|GAA31968.2| NADH dehydrogenase (ubiquinone) Fe-S protein 2 [Clonorchis
sinensis]
Length = 609
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 225/405 (55%), Positives = 288/405 (71%), Gaps = 28/405 (6%)
Query: 278 IEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLP 337
+EI++ +LNFGPQHPAAHGVLRLI+EL+GEV R+ DPHIGLLHR TEKL E +TY Q+LP
Sbjct: 16 VEIQNVQLNFGPQHPAAHGVLRLIMELDGEV-RRLDPHIGLLHRGTEKLIEYKTYTQALP 74
Query: 338 YMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI 397
Y DRLDY SMMCNE Y +A+EKLLN++IP RA+YIR +F E+TRL+NH + +GSH LD+
Sbjct: 75 YFDRLDYASMMCNEQCYALAVEKLLNVEIPPRAKYIRTLFAELTRLMNHCLAVGSHILDV 134
Query: 398 GAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKAT 457
GA+ + + F ERE + + YE VSGARMHAAY RPGGVY DLP
Sbjct: 135 GAITPIFWLFEEREKMFEFYERVSGARMHAAYIRPGGVYLDLPL---------------- 178
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
L+D + F +F + IDE LL +N IW R +GVVS E AL +GF+
Sbjct: 179 ---------GLMDDMYQFLEKFVQRIDELCDLLLNNPIWINRTKDVGVVSAEDALDLGFS 229
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GPMLRGSG+KWDLRK QPY+ Y + FD+PIG GD YDR+ +R+EEMRQS +I++QC+
Sbjct: 230 GPMLRGSGIKWDLRKAQPYDAYADMEFDVPIGLRGDCYDRFALRLEEMRQSVRIMQQCLN 289
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+ G V ++ KIT P R MK +ME LIHHFKLF+EG+ VP G Y+ VE PKGEF
Sbjct: 290 --KMPPGEVKVDDAKITPPKRAEMKDSMEALIHHFKLFSEGYLVPPGATYTAVEAPKGEF 347
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIG 682
G+YLVSDG N+PYR KI++PGFAHL ++ ++ G +++DVV +I
Sbjct: 348 GVYLVSDGTNRPYRCKIKAPGFAHLAAIDKLCHGFLLADVVAVIA 392
>gi|254440303|ref|ZP_05053797.1| NADH dehydrogenase (quinone), D subunit [Octadecabacter antarcticus
307]
gi|198255749|gb|EDY80063.1| NADH dehydrogenase (quinone), D subunit [Octadecabacter antarcticus
307]
Length = 415
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/417 (54%), Positives = 303/417 (72%), Gaps = 27/417 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 24 QIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNLPY 83
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVS M EHA+ +AIE+L +P RA IRV+F EI R+L+HL+ + + ++D+G
Sbjct: 84 FDRLDYVSPMNQEHAWCLAIEQLTGTVVPRRASLIRVLFCEIGRILSHLLNVTTQAMDVG 143
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ ++ F ERE L+ E SGAR+HAAY+RPGGV++DLP + +I + +A
Sbjct: 144 ALTPPVWGFEEREQLMVFSERASGARLHAAYFRPGGVHQDLP-------AGLITDIEA-- 194
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+ + F +F ++DE LLT+NRI+KQR V IGVV+ + L GF+G
Sbjct: 195 ------------WADQFMTKFMVDVDE---LLTENRIFKQRNVDIGVVNEQDILDWGFSG 239
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M RGSG+ WDLR+ QPYE Y+ F IP+GKNGD YDRYL R+EEMRQS II+Q I
Sbjct: 240 VMARGSGLAWDLRRAQPYECYDEFEFQIPVGKNGDCYDRYLCRMEEMRQSVSIIRQAIVK 299
Query: 579 LRS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
LR +GP+++ + K+T P R MK++ME LIHHFKL+TEGF+VP GE Y+CVE PKGE
Sbjct: 300 LREPDGQGPIMA-SGKLTPPTRGEMKTSMEALIHHFKLYTEGFHVPAGETYACVEAPKGE 358
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG++LV+DG+NKPYR KIR+PGF HLQ++ M + H ++DV IIG+ D+VFGEIDR
Sbjct: 359 FGVFLVADGSNKPYRAKIRAPGFLHLQAMDFMATKHQLADVAAIIGSIDVVFGEIDR 415
>gi|217979052|ref|YP_002363199.1| NADH dehydrogenase I subunit D [Methylocella silvestris BL2]
gi|217504428|gb|ACK51837.1| NADH dehydrogenase I, D subunit [Methylocella silvestris BL2]
Length = 394
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 225/417 (53%), Positives = 299/417 (71%), Gaps = 28/417 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E RTYLQ++PY
Sbjct: 4 QVRNFTINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLMEARTYLQNVPY 63
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +AIEKL+ ++ P RAQ +RV+F EI R+L+HL+ + + ++D+G
Sbjct: 64 FDRLDYVAPMNQEHAFCLAIEKLVGLEAPRRAQLLRVLFCEIGRILSHLLNVTTQAMDVG 123
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE SGAR+HA Y+RPGGV+ D+P
Sbjct: 124 ALTPPLWGFEEREKLMVFYERASGARLHANYFRPGGVHMDIP------------------ 165
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L+D IE + + F K D+ + L DNRI+KQR V IG+VS E + GF+G
Sbjct: 166 -------AQLIDDIEAWCDPFLKTCDDLQALFIDNRIFKQRNVDIGIVSLEDCWAWGFSG 218
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG WDLRK QPYE Y + FDIP+G++GD+YDR ++R+EEMRQS I+KQC+
Sbjct: 219 VMVRGSGAAWDLRKAQPYECYEEMEFDIPVGRHGDNYDRQVIRMEEMRQSVSIMKQCVAK 278
Query: 579 LR--SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
LR + +GPV++ K P+R MK +ME LIHHFKL+TEGF+VP GE+Y+ VE PKGE
Sbjct: 279 LREPAGQGPVLA-KGKFAPPSRGEMKRSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGE 337
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG+YLVSDG NKPYR KIR+PGFAHL ++ + M++DV I+G+ DIVFGE+DR
Sbjct: 338 FGVYLVSDGTNKPYRCKIRAPGFAHLAAMDFLCRKSMLADVSAILGSIDIVFGEVDR 394
>gi|406700529|gb|EKD03696.1| NADH-ubiquinone oxidoreductase [Trichosporon asahii var. asahii CBS
8904]
Length = 454
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 223/414 (53%), Positives = 292/414 (70%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++ + +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E + Y Q+LPY
Sbjct: 68 MRHFTVNFGPQHPAAHGVLRLILELNGEEILRADPHVGLLHRGTEKLIEYKNYTQALPYF 127
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMM NE +Y +A+EKLLNI++P RA++IR + EITR+LNHLM + +H++D+GA
Sbjct: 128 DRLDYVSMMTNELSYTLAVEKLLNIEVPERAKWIRTLMGEITRILNHLMAVLTHAMDVGA 187
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L++ YE VSGARMHAAY RPGGV DLP
Sbjct: 188 LTPFLWGFEEREKLMEFYERVSGARMHAAYVRPGGVAFDLPH------------------ 229
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD I ++ +F +DE E ++T NRIWK+R +GIG V+ + AL FTG
Sbjct: 230 -------GLLDDIFKWSTQFGSRVDEIEEVITGNRIWKERTIGIGKVTAQEALDYSFTGV 282
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG+ WD+RK PY+ Y+ + F++P+GKNGD YDRYL R++E R+S II QC+ +
Sbjct: 283 MLRGSGIPWDIRKVAPYDAYDKVEFNVPVGKNGDCYDRYLCRVQEFRESLNIINQCLNKM 342
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G +++NKI P R +MK +ME LIHHFKLF+EG+ VP GE Y+ +E PKGE G+
Sbjct: 343 PA--GAYKTDDNKIVPPPRASMKESMEALIHHFKLFSEGYSVPPGETYTAIEAPKGEMGV 400
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+N+PY+ KIR+PGFAHL M+ + D V IIGT D+VFGE+DR
Sbjct: 401 YLVSDGSNRPYKCKIRAPGFAHLAGADFMMRHAYLPDAVAIIGTMDLVFGEVDR 454
>gi|401882845|gb|EJT47086.1| NADH-ubiquinone oxidoreductase [Trichosporon asahii var. asahii CBS
2479]
Length = 454
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 223/414 (53%), Positives = 292/414 (70%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++ + +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E + Y Q+LPY
Sbjct: 68 MRHFTVNFGPQHPAAHGVLRLILELNGEEILRADPHVGLLHRGTEKLIEYKNYTQALPYF 127
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMM NE +Y +A+EKLLNI++P RA++IR + EITR+LNHLM + +H++D+GA
Sbjct: 128 DRLDYVSMMTNELSYTLAVEKLLNIEVPERAKWIRTLMGEITRILNHLMAVLTHAMDVGA 187
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L++ YE VSGARMHAAY RPGGV DLP
Sbjct: 188 LTPFLWGFEEREKLMEFYERVSGARMHAAYVRPGGVAFDLPH------------------ 229
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD I ++ +F +DE E ++T NRIWK+R +GIG V+ + AL FTG
Sbjct: 230 -------GLLDDIFKWSTQFGSRVDEIEEVITGNRIWKERTIGIGKVTAQEALDYSFTGV 282
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG+ WD+RK PY+ Y+ + F++P+GKNGD YDRYL R++E R+S II QC+ +
Sbjct: 283 MLRGSGIPWDIRKVAPYDAYDKVEFNVPVGKNGDCYDRYLCRVQEFRESLNIINQCLNKM 342
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G +++NKI P R +MK +ME LIHHFKLF+EG+ VP GE Y+ +E PKGE G+
Sbjct: 343 PA--GAYKTDDNKIVPPPRASMKESMEALIHHFKLFSEGYSVPPGETYTAIEAPKGEMGV 400
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+N+PY+ KIR+PGFAHL M+ + D V IIGT D+VFGE+DR
Sbjct: 401 YLVSDGSNRPYKCKIRAPGFAHLAGADFMMRHAYLPDAVAIIGTMDLVFGEVDR 454
>gi|350646857|emb|CCD58578.1| NADH-ubiquinone oxidoreductase fe-s protein 2 (ndufs2), putative
[Schistosoma mansoni]
Length = 664
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 222/408 (54%), Positives = 289/408 (70%), Gaps = 27/408 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
E++S LNFGPQHPAAHGVLRLI+EL+GE + + DPHIGLLHR TEKL E +TY Q+LPY
Sbjct: 73 EVQSVHLNFGPQHPAAHGVLRLIMELDGEKIIRLDPHIGLLHRGTEKLIEYKTYTQALPY 132
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDY SMMCNE Y +A+EKLLNI++P RA+YIR ++ EITR++NH + +GS LDIG
Sbjct: 133 FDRLDYASMMCNEQCYSLAVEKLLNIEVPPRAKYIRTLYSEITRIMNHCLAVGSTVLDIG 192
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+ + + F ERE + + YE VSGARMHAAY RPGGVY D+P
Sbjct: 193 GITPIFWLFEEREKMFEFYERVSGARMHAAYIRPGGVYLDMPL----------------- 235
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L+D I F +FP+ +DE LL DN IW R +G+VS E AL +GF+G
Sbjct: 236 --------GLMDDIYQFIQKFPQRLDEISDLLFDNPIWITRTKDVGIVSAEDALDLGFSG 287
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+KWDLRK QPY+ Y ++FD+P+G +GD YDR++VR+EEMRQS +I++QC+
Sbjct: 288 VMLRGSGIKWDLRKTQPYDAYEDMDFDVPVGVHGDCYDRFIVRMEEMRQSLRIMEQCLN- 346
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ KG + ++ KI P R MKS+ME LIHHFKLF+EG+ VP G Y+ VE PKGEFG
Sbjct: 347 -KMPKGEIKVDDAKICPPKRAEMKSSMEALIHHFKLFSEGYLVPPGSTYTAVEAPKGEFG 405
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDI 686
+YLVSDG NKPYR KI++PGFAH+ ++ ++ G M+ DVV +I ++ I
Sbjct: 406 VYLVSDGTNKPYRCKIKAPGFAHMAAIDKLCRGFMLPDVVAVIVSESI 453
>gi|392573491|gb|EIW66631.1| hypothetical protein TREMEDRAFT_45745 [Tremella mesenterica DSM
1558]
Length = 460
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 223/414 (53%), Positives = 292/414 (70%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++ + +NFGPQHPAAHGVLRLILEL GE + +ADPHIGLLHR TEKL E + Y Q+LPY
Sbjct: 74 MRHFTVNFGPQHPAAHGVLRLILELNGEEILRADPHIGLLHRGTEKLIEYKNYTQALPYF 133
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYVSMM NE Y +A+EKLLNI++P RA++IR +F EITR+LNHLM + +H++D+GA
Sbjct: 134 DRLDYVSMMTNELCYSLAVEKLLNIEVPERAKWIRTLFGEITRILNHLMAVLTHAMDVGA 193
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L++ YE VSGARMHAAY RPGGV DLP
Sbjct: 194 LTPFLWGFEEREKLMEFYERVSGARMHAAYVRPGGVAFDLPH------------------ 235
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD I + +F +DE E ++T NR+WK R + IG V+ ++AL F+G
Sbjct: 236 -------GLLDDIFKWATQFSSRVDEIEEVVTGNRVWKGRTIDIGKVTAQQALDYSFSGV 288
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG+ WD+RK PY+ Y+ + FD+P+GKNGD YDRYL R++E R+S +II QC+ +
Sbjct: 289 MLRGSGIPWDIRKVAPYDSYDKVEFDVPVGKNGDCYDRYLCRVQEFRESLRIIDQCLNKM 348
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + +++KI P R +MK +ME LIHHFK+F+EG+ VP GE YS +E PKGE G+
Sbjct: 349 PT--GAIKVDDHKIVPPPRASMKESMESLIHHFKIFSEGYSVPPGETYSAIEAPKGEMGV 406
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG+N+PY+ KIR+PGFAHL M+ H + D V IIGT D+VFGE+DR
Sbjct: 407 YLVSDGSNRPYKCKIRAPGFAHLAGSDFMMRHHFLPDAVAIIGTMDLVFGEVDR 460
>gi|254450921|ref|ZP_05064358.1| NADH dehydrogenase (quinone), D subunit [Octadecabacter arcticus
238]
gi|198265327|gb|EDY89597.1| NADH dehydrogenase (quinone), D subunit [Octadecabacter arcticus
238]
Length = 414
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/417 (54%), Positives = 301/417 (72%), Gaps = 27/417 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 23 KIRNFNINFGPQHPAAHGVLRLVLELDGEVVERCDPHIGLLHRGTEKLMESRTYLQNLPY 82
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVS M EHA+ +AIEKL +P RA IRV+F EI R+LNHLM + + ++D+G
Sbjct: 83 FDRLDYVSPMNQEHAWCLAIEKLTGTVVPRRASLIRVLFCEIGRVLNHLMNVTTQAMDVG 142
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ ++ F ERE L+ E GAR+HAAY+RPGGV++DLP + +I + +A
Sbjct: 143 ALTPPVWGFEEREQLMVFSERACGARLHAAYFRPGGVHQDLP-------AGLIEDIEA-- 193
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+ + F +F ++D LLT+NRI+KQR V IG+++ + L GF+G
Sbjct: 194 ------------WADQFMTKFMVDVD---GLLTENRIFKQRNVDIGIINEQDILDWGFSG 238
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M RGSG+ WDLR+ QPYE Y+ F IP+GKNGD YDRYL R+EEMRQS II+Q I
Sbjct: 239 VMARGSGLAWDLRRAQPYECYDEFEFQIPVGKNGDCYDRYLCRMEEMRQSVSIIRQAIVK 298
Query: 579 LRS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
LR +GP+++ K+T P R MK++ME LIHHFKL+TEGF+VP+GE Y+CVE PKGE
Sbjct: 299 LREPDGQGPIMA-RGKLTPPTRGEMKTSMEALIHHFKLYTEGFHVPVGETYACVEAPKGE 357
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FG++LV+DG+NKPYR KIR+PGF HLQ++ M + H ++DV IIG+ D+VFGEIDR
Sbjct: 358 FGVFLVADGSNKPYRAKIRAPGFLHLQAMDFMATKHQLADVAAIIGSLDVVFGEIDR 414
>gi|390604951|gb|EIN14342.1| NADH dehydrogenase I D subunit [Punctularia strigosozonata
HHB-11173 SS5]
Length = 462
Score = 467 bits (1201), Expect = e-128, Method: Compositional matrix adjust.
Identities = 233/469 (49%), Positives = 307/469 (65%), Gaps = 41/469 (8%)
Query: 225 RLHSITSLWSSANWYEREAFDLFGIFFDGHDDLRRLLTDYGFVGHPFRKDFPVIEIKSYK 284
R+ +L + + DL G+ ++ +L D G F +F E+
Sbjct: 35 RIEKTGTLGGKSAFDTHTTEDLHGV------AIQEILADEGSAMRHFTGEFWPREL---- 84
Query: 285 LNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDY 344
PQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E +TY+Q+LPY DRLDY
Sbjct: 85 ----PQHPAAHGVLRLILELNGEEILRADPHVGLLHRGTEKLIEYKTYIQALPYFDRLDY 140
Query: 345 VSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLL 404
VSMM NE Y +A+EKLLNI +P RA++IR +F E+TR+LNHLM + +H++D+GA+ L
Sbjct: 141 VSMMTNELCYSLAVEKLLNIDVPERAKWIRTLFGELTRVLNHLMAVLTHAMDVGALTPFL 200
Query: 405 YAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENR 464
+ F ERE L++ YE VSGARMHAAY RPGGV DLP
Sbjct: 201 WGFEEREKLMEFYERVSGARMHAAYVRPGGVAFDLPH----------------------- 237
Query: 465 QGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGS 524
LL+ I + +F +DE E ++T NRIWK+R +G+GVV+ + A+ F+G MLRGS
Sbjct: 238 --GLLNDIYQWATQFSSRVDEIEEVVTGNRIWKERTIGVGVVTAKEAMDYSFSGVMLRGS 295
Query: 525 GVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKG 584
GVKWDLRK PY+ Y + FD+P+GKNGD YDRYL R++E R+S +II QC+ + + G
Sbjct: 296 GVKWDLRKVAPYDKYAEVEFDVPVGKNGDCYDRYLCRVQEFRESLRIIHQCLNKMPT--G 353
Query: 585 PVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSD 644
+ ++ K+ P R MK +ME LIHHFK+F+EGF VP GE Y+ +E PKGE +YLVSD
Sbjct: 354 VIKVDDYKLVPPPRATMKESMEALIHHFKIFSEGFSVPPGETYTAIEAPKGEMAVYLVSD 413
Query: 645 GANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G N+PYR IR+PGFAHL M+ GH ++DVV IIGT D+VFGE+DR
Sbjct: 414 GTNRPYRCSIRAPGFAHLAGSDFMMRGHTVADVVAIIGTMDLVFGEVDR 462
>gi|254294101|ref|YP_003060124.1| NADH dehydrogenase subunit D [Hirschia baltica ATCC 49814]
gi|254042632|gb|ACT59427.1| NADH dehydrogenase I, D subunit [Hirschia baltica ATCC 49814]
Length = 399
Score = 467 bits (1201), Expect = e-128, Method: Compositional matrix adjust.
Identities = 223/413 (53%), Positives = 299/413 (72%), Gaps = 27/413 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
+ + +NFGPQHPAAHGVLR++LEL+GE+V + D HIGLLHR TEKL E +TYLQ++PY D
Sbjct: 14 RKFTINFGPQHPAAHGVLRMVLELDGEIVERVDSHIGLLHRGTEKLIEYKTYLQAMPYFD 73
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDY + M EHA+ +AIEKL I +P RA +IRV++ EI RL +HL+ + + ++D+GA+
Sbjct: 74 RLDYCAPMNQEHAWCLAIEKLAGITVPRRASFIRVLYSEIGRLQSHLLNVTTQAMDVGAL 133
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
+ + F ERE L+ YE SG+RMHAAY+RPGGV++D+P
Sbjct: 134 TPITWGFEEREKLMVFYERASGSRMHAAYFRPGGVHQDVPP------------------- 174
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
LL+ I DF + F K +D+ E LLT++RI+KQR V IG VS + AL GF+G M
Sbjct: 175 ------ELLEDIYDFCDPFLKVLDDIEGLLTESRIFKQRNVNIGQVSTQTALDWGFSGVM 228
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
+RGSG+ WDLR+ QPYEIY+ L+F IP+GK+GD YDRY+ R++EMR+S KIIKQCI +
Sbjct: 229 VRGSGMAWDLRRSQPYEIYSELDFGIPVGKHGDCYDRYICRMDEMRESIKIIKQCIDMI- 287
Query: 581 SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIY 640
GPV+ +K P R MK++ME LIHHFKL+TEGF+VP GE+Y+ VE PKGEFG+Y
Sbjct: 288 -PIGPVLPERSKYAPPRRGEMKASMEALIHHFKLYTEGFHVPEGEVYATVEAPKGEFGVY 346
Query: 641 LVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
LVSDG+N+PYR KI++PG+AHLQ++ + GH ++D I+G+ DIVFGEIDR
Sbjct: 347 LVSDGSNRPYRAKIKAPGYAHLQAMDHLCKGHQLADASAILGSLDIVFGEIDR 399
>gi|337267105|ref|YP_004611160.1| NADH dehydrogenase I subunit D [Mesorhizobium opportunistum
WSM2075]
gi|336027415|gb|AEH87066.1| NADH dehydrogenase I, D subunit [Mesorhizobium opportunistum
WSM2075]
Length = 396
Score = 466 bits (1200), Expect = e-128, Method: Compositional matrix adjust.
Identities = 233/416 (56%), Positives = 294/416 (70%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHP+AHGVLRL+LEL+GE+V +ADPHIGLLHR TEKL E + YLQ+LPY
Sbjct: 6 VRNFTINFGPQHPSAHGVLRLVLELDGEIVDRADPHIGLLHRGTEKLIEYKNYLQALPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +A EKLL I +P R Q IRV+F EI RLL+HL+ + + ++DIGA
Sbjct: 66 DRLDYVAPMNQEHAFCLAAEKLLEISVPRRGQLIRVLFCEIGRLLSHLLNVTTQAMDIGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SGARMHA Y+R GGV++DLP
Sbjct: 126 LTPPLWGFAEREKLMVFYERASGARMHANYFRIGGVHQDLPP------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD I F + F K + + LLT +RI+KQR V +G +S + A + GF+G
Sbjct: 168 -------KLLDDIWAFCDPFLKVCENLDDLLTGSRIFKQRNVDVGAISLDDAWAWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLRK QPYE Y ++FDIP+GKNGD YDRYLVR+EEMRQS +I+KQC+ L
Sbjct: 221 MVRGSGASWDLRKAQPYECYPEMDFDIPVGKNGDCYDRYLVRMEEMRQSVRIMKQCLDKL 280
Query: 580 R--SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
R +GPV N KIT P R MK +ME I HFKL+TEG VP GE+Y+ VE PKGEF
Sbjct: 281 RLPEGQGPVAIPNQKITPPPRARMKRSMEATIQHFKLYTEGHRVPAGEVYAAVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVS+G+N PYR KIR+P FAHLQ++ + GHMI+DV IIG+ DIVFGEIDR
Sbjct: 341 GVYLVSNGSNVPYRCKIRAPSFAHLQAMDFLSRGHMIADVAAIIGSLDIVFGEIDR 396
>gi|11134048|sp|Q36450.1|NDUS2_NICSY RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
2; AltName: Full=NADH dehydrogenase subunit 7
gi|805002|emb|CAA60392.1| NADH:ubiquinone oxydoreductase subunit 7 [Nicotiana sylvestris]
Length = 394
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 229/415 (55%), Positives = 294/415 (70%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK++ NFGPQHPAAHGV R +LE+ GEVV +A+PHIGLL R TEKL E +TYLQ+LPY
Sbjct: 7 QIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQRGTEKLIEYKTYLQALPY 66
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DR +YVSMM EHA+ A+E+LLN ++P+RAQYIRV+F EITR+ NH + + +H++D+G
Sbjct: 67 SDRSEYVSMMAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAMDVG 126
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A L+AF ERE LL+ YE VSGARMHA++ RPGGV +DLP
Sbjct: 127 ASTPFLWAFEEREKLLEFYERVSGARMHASFIRPGGVAQDLP------------------ 168
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
G +D I+ FT +F IDE E + T NRIWKQRLV IG V+ ++A GF+G
Sbjct: 169 ------LGLCID-IDSFTQQFASRIDELEEMSTGNRIWKQRLVDIGTVTAQQAKDWGFSG 221
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WDLRK PY++++ L+ DIP+G GD YDRY +RIEEMRQS +II QC+
Sbjct: 222 VMLRGSGVCWDLRKAAPYDVHDQLDPDIPVGTRGDRYDRYCIRIEEMRQSVRIIVQCLNQ 281
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ S G + +++ K+ P+R MK +ME IHHF+ +TEGF VP Y+ VE PKGEFG
Sbjct: 282 MPS--GMIKADDRKLCPPSRSRMKLSMESSIHHFEPYTEGFSVPAPSTYTAVEAPKGEFG 339
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++LVS+G+N+PYR KIR+P FAH Q L M HM +DVVTIIGTQDIV GE+DR
Sbjct: 340 VFLVSNGSNRPYRRKIRAPCFAHSQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 394
>gi|429768405|ref|ZP_19300563.1| NADH dehydrogenase subunit D [Brevundimonas diminuta 470-4]
gi|429189186|gb|EKY30031.1| NADH dehydrogenase subunit D [Brevundimonas diminuta 470-4]
Length = 423
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 227/419 (54%), Positives = 299/419 (71%), Gaps = 28/419 (6%)
Query: 277 VIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSL 336
++ + + +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E RTYLQ++
Sbjct: 31 AMDDRKFTINFGPQHPAAHGVLRLVLELDGELVTRVDPHIGLLHRGTEKLMEARTYLQNI 90
Query: 337 PYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLD 396
PY+DRLDYVS M EHA+ +AIE+LL I +P R Q IRV++ E+ R+LNHL+ ++D
Sbjct: 91 PYLDRLDYVSPMNQEHAFCLAIERLLEIDVPYRGQLIRVLYSEMGRILNHLLNATMQAMD 150
Query: 397 IGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDL-PEIMPQYKSSIIRNNK 455
+GA+ L+ ERE L+ YE GAR+HA Y+RPGGV++DL PE
Sbjct: 151 VGALTPPLWGHEEREKLMVFYERACGARLHANYFRPGGVHQDLTPE-------------- 196
Query: 456 ATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMG 515
L+D I + FP +++ E+L+T+NRI+KQR V IGVVS E AL+ G
Sbjct: 197 ------------LIDDIGRWCAEFPAALNDIESLVTENRIFKQRNVDIGVVSKENALAWG 244
Query: 516 FTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQC 575
F+G MLRGS + WDLRK QPY+ Y + FDI +GKNGD +DRYL R+EEMRQS I++QC
Sbjct: 245 FSGVMLRGSDIAWDLRKAQPYDCYADMEFDIAVGKNGDCWDRYLCRVEEMRQSVSIMEQC 304
Query: 576 IKWLRSNKG-PVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPK 634
I LR+ G PV++ ++K+ P R MK +ME LIHHFKL+TEGF P GE+Y+ VE PK
Sbjct: 305 IHKLRNCPGEPVLTEDHKVAPPRRGEMKRSMEALIHHFKLYTEGFKTPEGEVYAAVEAPK 364
Query: 635 GEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
GEFG+YLVSDG NKPYR+K+ +PGF HLQ++ M GHM++DV I+G+ D+VFGE+DR
Sbjct: 365 GEFGVYLVSDGTNKPYRVKLSAPGFRHLQAMDWMNRGHMLADVSAILGSLDMVFGEVDR 423
>gi|344233312|gb|EGV65185.1| NADH-ubiquinone oxidoreductase 49 kDa subunit mitochondrial
precursor [Candida tenuis ATCC 10573]
Length = 472
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 222/415 (53%), Positives = 293/415 (70%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ + +NFGPQHPAAHGVLRLILEL GE + ++DPH+GLLHR TEKL E +TY+Q+LPY
Sbjct: 85 KIRHFTINFGPQHPAAHGVLRLILELHGEEIVRSDPHVGLLHRGTEKLIESKTYMQALPY 144
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLN+ IP+RA+YIR +F EITR+LNH M + SH +D+G
Sbjct: 145 FDRLDYVSMMTNELVFALAVEKLLNVDIPLRAKYIRTLFGEITRILNHCMSVLSHIMDVG 204
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+ L+ F ERE L++ YE VSGAR+H AY+RPGGV +DLP
Sbjct: 205 GLTPFLWGFEEREKLMEFYERVSGARLHTAYFRPGGVSQDLP------------------ 246
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E L TDNRIWK R +GVV+ E AL+ +G
Sbjct: 247 -------AGLLDDIYMWATQFGDRIDEVEELCTDNRIWKSRTQDVGVVTAEDALNYALSG 299
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ +D+RK QPY+ Y+L++FD+ +G NGD YDRYL+R+ E RQS +II+QCI
Sbjct: 300 VMLRGSGIPFDIRKSQPYDAYDLVDFDVAVGINGDCYDRYLIRMVEFRQSLRIIEQCIND 359
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ +GPV + I+ P+R MK +ME LIHHF LFT+G+ VP GE Y+ +E PKGE
Sbjct: 360 M--PEGPVKVEDFNISPPSRAMMKEDMEALIHHFLLFTKGYAVPQGETYTAIEAPKGEMA 417
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDG+ +PYR KIR+PGFAHL + + G++++D V IIGT D+VFGE+DR
Sbjct: 418 VYVVSDGSERPYRCKIRAPGFAHLGAFDHISRGNLLADAVAIIGTMDLVFGEVDR 472
>gi|86137597|ref|ZP_01056174.1| NADH dehydrogenase delta subunit [Roseobacter sp. MED193]
gi|85825932|gb|EAQ46130.1| NADH dehydrogenase delta subunit [Roseobacter sp. MED193]
Length = 404
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 226/415 (54%), Positives = 298/415 (71%), Gaps = 26/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 16 KIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNLPY 75
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +AIEKL +++P R IRV++ EI R+LNHL+ + + ++D+G
Sbjct: 76 FDRLDYVAPMNQEHAWCLAIEKLTGVEVPRRGSLIRVLYSEIGRILNHLLNVTTQAMDVG 135
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE GAR+HAAY+RPGGV++D+P+ +
Sbjct: 136 ALTPPLWGFEEREKLMVFYERACGARLHAAYFRPGGVHQDIPDDLLDDIDL--------- 186
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+ FPK + + + LLT+NRI+KQR IGVV+ + L GF+G
Sbjct: 187 ----------------WALEFPKVLADIDGLLTENRIFKQRNCDIGVVTEQEILDWGFSG 230
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG+ WDLR+ QPYE Y+ +F IP+GKNGD YDRYLVR+EEMRQS II+Q I
Sbjct: 231 VMVRGSGMAWDLRRAQPYECYDEFDFQIPVGKNGDCYDRYLVRMEEMRQSLSIIRQAIAK 290
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR G V++ K+T P R +MK++ME LIHHFKL+TEGF+VP GE+Y+ VE PKGEFG
Sbjct: 291 LREATGDVLA-RGKLTPPKRGDMKTSMESLIHHFKLYTEGFHVPAGEVYAAVEAPKGEFG 349
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLV+DG+NKPYR KIR+PGF HLQ++ + GH ++DV IIGT D+VFGEIDR
Sbjct: 350 VYLVADGSNKPYRSKIRAPGFLHLQAMDHVAKGHQLADVAAIIGTMDVVFGEIDR 404
>gi|126740379|ref|ZP_01756067.1| NADH dehydrogenase subunit D [Roseobacter sp. SK209-2-6]
gi|126718515|gb|EBA15229.1| NADH dehydrogenase subunit D [Roseobacter sp. SK209-2-6]
Length = 404
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/415 (54%), Positives = 297/415 (71%), Gaps = 26/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 16 KIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNLPY 75
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +AIEKL +++P R Q IRV++ EI R+LNHL+ + + ++D+G
Sbjct: 76 FDRLDYVAPMNQEHAWCLAIEKLTGVEVPRRGQLIRVLYSEIGRVLNHLLNVTTQAMDVG 135
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE GAR+H+ Y+RPGGV++DLP+ +
Sbjct: 136 ALTPPLWGFEEREKLMIFYERACGARLHSNYFRPGGVHQDLPDDLLDDIDL--------- 186
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+ FPK +D+ + LLT+NRI+KQR IGVV+ E L GF+G
Sbjct: 187 ----------------WALEFPKVLDDIDGLLTENRIFKQRNCDIGVVTEEEILEYGFSG 230
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG+ WDLR+ QPYE Y+ +F +P+GKNGD YDRYL R+EEMRQS II+Q I
Sbjct: 231 VMVRGSGLAWDLRRAQPYECYDEFDFQVPVGKNGDCYDRYLCRMEEMRQSTSIIRQAIAK 290
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR G V++ K+T P R MK++ME LIHHFKL+TEGF+VP GE+Y+ VE PKGEFG
Sbjct: 291 LREATGDVLA-RGKLTPPKRGEMKTSMESLIHHFKLYTEGFHVPAGEVYAAVEAPKGEFG 349
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLV+DG+NKPYR KIR+PG+ HLQ++ + GH ++DV IIGT D+VFGEIDR
Sbjct: 350 VYLVADGSNKPYRSKIRAPGYLHLQAMDHVAKGHQLADVAAIIGTMDVVFGEIDR 404
>gi|344233313|gb|EGV65186.1| hypothetical protein CANTEDRAFT_113697 [Candida tenuis ATCC 10573]
Length = 433
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 222/415 (53%), Positives = 293/415 (70%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ + +NFGPQHPAAHGVLRLILEL GE + ++DPH+GLLHR TEKL E +TY+Q+LPY
Sbjct: 46 KIRHFTINFGPQHPAAHGVLRLILELHGEEIVRSDPHVGLLHRGTEKLIESKTYMQALPY 105
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLN+ IP+RA+YIR +F EITR+LNH M + SH +D+G
Sbjct: 106 FDRLDYVSMMTNELVFALAVEKLLNVDIPLRAKYIRTLFGEITRILNHCMSVLSHIMDVG 165
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+ L+ F ERE L++ YE VSGAR+H AY+RPGGV +DLP
Sbjct: 166 GLTPFLWGFEEREKLMEFYERVSGARLHTAYFRPGGVSQDLP------------------ 207
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E L TDNRIWK R +GVV+ E AL+ +G
Sbjct: 208 -------AGLLDDIYMWATQFGDRIDEVEELCTDNRIWKSRTQDVGVVTAEDALNYALSG 260
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ +D+RK QPY+ Y+L++FD+ +G NGD YDRYL+R+ E RQS +II+QCI
Sbjct: 261 VMLRGSGIPFDIRKSQPYDAYDLVDFDVAVGINGDCYDRYLIRMVEFRQSLRIIEQCIND 320
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ +GPV + I+ P+R MK +ME LIHHF LFT+G+ VP GE Y+ +E PKGE
Sbjct: 321 M--PEGPVKVEDFNISPPSRAMMKEDMEALIHHFLLFTKGYAVPQGETYTAIEAPKGEMA 378
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDG+ +PYR KIR+PGFAHL + + G++++D V IIGT D+VFGE+DR
Sbjct: 379 VYVVSDGSERPYRCKIRAPGFAHLGAFDHISRGNLLADAVAIIGTMDLVFGEVDR 433
>gi|302035989|ref|YP_003796311.1| NADH-quinone oxidoreductase subunits C and D [Candidatus Nitrospira
defluvii]
gi|300604053|emb|CBK40385.1| NADH-quinone oxidoreductase, subunits C and D [Candidatus
Nitrospira defluvii]
Length = 583
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 245/580 (42%), Positives = 337/580 (58%), Gaps = 86/580 (14%)
Query: 160 LRDHVNFRFEQLIDLCGIDYSIYNKNINSDNSNKNLRFAIVLHLLSLNYNWRLRVRVFAE 219
L D F+ + D+C +DY N RF +V LLSL + R+R++
Sbjct: 44 LHDTPEASFDHITDICSVDYP-----------NDPERFEVVYQLLSLAHRRRIRLKARV- 91
Query: 220 NNELPRLHSITSLWSSANWYEREAFDLFGIFFDGHDDLRR-LLTDYGFVGHPFRKDFPV- 277
E P++ S+T +W A + ERE +DL GI F GH DLRR LL D GHP RKDFP
Sbjct: 92 TEEAPQIASVTGIWKGAEFMEREVYDLMGITFVGHPDLRRILLPDDYEEGHPLRKDFPAE 151
Query: 278 ----------------------------IEIKSYK---------------LNFGPQHPAA 294
E ++Y LN GPQHP+
Sbjct: 152 GRGWRSSFPFIPRLDEAPEEQTEGEVPEQEKQAYLVAEHQGGTRRREELLLNMGPQHPST 211
Query: 295 HGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAY 354
HGVLR++LEL+GE + KA P +G LHR EKLAE Y+Q +P+ DRLDYV M N +AY
Sbjct: 212 HGVLRVVLELDGERIVKATPDLGYLHRGVEKLAEGLHYMQVIPHTDRLDYVCAMTNNYAY 271
Query: 355 VMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLLYAFREREDLL 414
V A+EKLL+I +P RA+Y+R + E+ R++ HL W+G+ +LDIGAM V + FRERE LL
Sbjct: 272 VRAVEKLLDITVPERAEYVRTIVAEMQRIIGHLFWLGTQALDIGAMTVFFWTFREREVLL 331
Query: 415 DCYEAVSGARMHAAYYRPGGVYRDL-PEIMPQYKSSIIRNNKATKILNENRQGSLLDFIE 473
D +E + GAR+ YYR GGV D P+++ + K+
Sbjct: 332 DMFEKLCGARLTLNYYRIGGVDSDFTPDLVVRLKA------------------------- 366
Query: 474 DFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGSGVKWDLRKK 533
F FP+ ++EY LL NRIW R I V+S E A++ G TGP LRGSGV +D+RK
Sbjct: 367 -FLQTFPEKVNEYNQLLMSNRIWVGRTKDIAVISAEDAINFGLTGPTLRGSGVDYDVRKY 425
Query: 534 QPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKGPVISNNNKI 593
+PY +Y+ + +++P+GK GD+YDRY VR+EEMRQS +II QC+ + +GP++++ +
Sbjct: 426 EPYGVYDKVEWEVPVGKRGDTYDRYWVRMEEMRQSARIIAQCLDQM--PEGPIMADVPHV 483
Query: 594 TSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKPYRIK 653
P + + +ME LIHHF +FT+GF P GE Y E PKGE G ++VSDG+ +PYR+K
Sbjct: 484 IPPPKAKVMRDMESLIHHFIIFTQGFKPPKGETYCGTEAPKGELGFFIVSDGSPRPYRLK 543
Query: 654 IRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IR+P F H+ + M G++ISD++TI GT DIV GE DR
Sbjct: 544 IRAPSFIHMGAFDHMARGYLISDIITIFGTYDIVMGECDR 583
>gi|296446751|ref|ZP_06888690.1| NADH dehydrogenase I, D subunit [Methylosinus trichosporium OB3b]
gi|296255754|gb|EFH02842.1| NADH dehydrogenase I, D subunit [Methylosinus trichosporium OB3b]
Length = 396
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 230/415 (55%), Positives = 290/415 (69%), Gaps = 27/415 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
+S+ LNFGP HPAAHGVLRL+LEL+GE+VR ADPH+G LHR TEKL E +TYLQ LPY D
Sbjct: 7 RSFTLNFGPVHPAAHGVLRLVLELDGEIVRHADPHVGFLHRGTEKLLEDKTYLQGLPYFD 66
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYV+ M EH + +A E+LL ++IP RAQ IRV++ EI RLL+HL+ I + + D GA+
Sbjct: 67 RLDYVAPMNQEHGFCLAAERLLELEIPRRAQLIRVLYLEIGRLLSHLLNITTWASDCGAL 126
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
L+ F ERE L+ YE SGARMHA Y+R GGV++DLPE
Sbjct: 127 TPNLWGFEEREKLMGFYERASGARMHANYFRVGGVHQDLPE------------------- 167
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
+L+D I+DF +RFP +D+ E LLTDNRI+K R V IG V+ E A +GF+G
Sbjct: 168 ------ALIDDIDDFCDRFPHVLDDIEALLTDNRIFKARNVDIGAVTLEEAWGLGFSGVF 221
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
LR G WDLRK QPYE Y ++FDIP+G++GD YDRY VR+EE+RQS +I+KQ + LR
Sbjct: 222 LRACGAAWDLRKAQPYECYEEMDFDIPVGRHGDCYDRYCVRVEELRQSTRIMKQSVTKLR 281
Query: 581 S--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ KGPV + + KIT P R MK +ME I HFKL+TEG +VP GE+Y VE PKGEFG
Sbjct: 282 AGDGKGPVAAQHPKITPPPREVMKRSMEATIEHFKLYTEGVHVPAGEVYVAVEAPKGEFG 341
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVS G +KPYR KIR P +AHL + + GHM++DV IIG+ DIVFGEIDR
Sbjct: 342 VYLVSRGGDKPYRCKIRPPSYAHLAATELLSRGHMLADVAAIIGSLDIVFGEIDR 396
>gi|182679350|ref|YP_001833496.1| NADH dehydrogenase I subunit D [Beijerinckia indica subsp. indica
ATCC 9039]
gi|218534355|sp|B2IHW4.1|NUOD1_BEII9 RecName: Full=NADH-quinone oxidoreductase subunit D 1; AltName:
Full=NADH dehydrogenase I subunit D 1; AltName:
Full=NDH-1 subunit D 1
gi|182635233|gb|ACB96007.1| NADH dehydrogenase I, D subunit [Beijerinckia indica subsp. indica
ATCC 9039]
Length = 396
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/416 (54%), Positives = 297/416 (71%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++++ +NFGPQHPAAHGVLRL+LEL+GEVV + DPHIGLLHR TEKL E RTYLQ++PY
Sbjct: 6 VRNFAINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLMEARTYLQNVPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +AIEKLL I++P R Q +RV++ EI R+L+HL+ + + ++D+GA
Sbjct: 66 DRLDYVAPMNQEHAFCLAIEKLLGIEVPRRGQLLRVLWCEIGRILSHLLNVTTQAMDVGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE SGARMHA Y+RPGGV+ D P+
Sbjct: 126 LTPPLWGFEEREKLMVFYERASGARMHANYFRPGGVHIDCPQ------------------ 167
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D I + + F K D+ L +NRI+KQR V IGV+S E GF+G
Sbjct: 168 -------QLIDDIGAWCDPFLKVCDDLNDLFIENRIFKQRNVDIGVISLEDCWRWGFSGV 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG WDLRK QPYE Y ++FDIP+G++GD+YDR ++R+EEMRQS KI+KQC++ L
Sbjct: 221 MVRGSGAAWDLRKAQPYECYEEMDFDIPVGRHGDNYDRQVIRMEEMRQSTKIMKQCVEKL 280
Query: 580 R--SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
S KGPV + +K+ P+R MK +ME LIHHFKL+TEGF+VP GE+Y VE PKGEF
Sbjct: 281 SQASGKGPVATPQHKVVPPSRAEMKRSMEALIHHFKLYTEGFHVPAGEVYCGVEAPKGEF 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLVSDG +KPYR KIR+PGFAHL ++ + M++DV I+G+ DIVFGE+DR
Sbjct: 341 GVYLVSDGTDKPYRCKIRAPGFAHLSAMDFLCRKSMLADVSAILGSLDIVFGEVDR 396
>gi|383487192|ref|YP_005404872.1| NADH dehydrogenase subunit D [Rickettsia prowazekii str. GvV257]
gi|383487769|ref|YP_005405448.1| NADH dehydrogenase subunit D [Rickettsia prowazekii str.
Chernikova]
gi|383488616|ref|YP_005406294.1| NADH dehydrogenase subunit D [Rickettsia prowazekii str.
Katsinyian]
gi|383489456|ref|YP_005407133.1| NADH dehydrogenase subunit D [Rickettsia prowazekii str. Dachau]
gi|383499594|ref|YP_005412955.1| NADH dehydrogenase subunit D [Rickettsia prowazekii str.
BuV67-CWPP]
gi|383500431|ref|YP_005413791.1| NADH dehydrogenase subunit D [Rickettsia prowazekii str. RpGvF24]
gi|380757557|gb|AFE52794.1| NADH dehydrogenase subunit D [Rickettsia prowazekii str. GvV257]
gi|380758128|gb|AFE53364.1| NADH dehydrogenase subunit D [Rickettsia prowazekii str. RpGvF24]
gi|380760648|gb|AFE49170.1| NADH dehydrogenase subunit D [Rickettsia prowazekii str.
Chernikova]
gi|380761495|gb|AFE50016.1| NADH dehydrogenase subunit D [Rickettsia prowazekii str.
Katsinyian]
gi|380762340|gb|AFE50860.1| NADH dehydrogenase subunit D [Rickettsia prowazekii str.
BuV67-CWPP]
gi|380763179|gb|AFE51698.1| NADH dehydrogenase subunit D [Rickettsia prowazekii str. Dachau]
Length = 363
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 224/390 (57%), Positives = 285/390 (73%), Gaps = 27/390 (6%)
Query: 304 LEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLN 363
++GEVV ADPHIGLLHR TEKL E +TYLQ++PY DRLDYVS MC EHA+ +A+E LL
Sbjct: 1 MDGEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVESLLE 60
Query: 364 IKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGA 423
+P RAQ+IRV+F E+TR+LNH + IGS +LDIGA LL+ F ERE +++ YE VSG+
Sbjct: 61 CSVPRRAQFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYERVSGS 120
Query: 424 RMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNI 483
RMH+ Y+RPGGV DLPE +LL+ I F +FP +
Sbjct: 121 RMHSNYFRPGGVAEDLPE-------------------------NLLEDINKFIEQFPSKL 155
Query: 484 DEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLN 543
++ E LL +NR+WKQRLV IGVVS + A+ GF+GPMLRGSG+ WDLRK PY++Y+ ++
Sbjct: 156 NDIENLLNENRLWKQRLVDIGVVSQKDAMDWGFSGPMLRGSGIAWDLRKSNPYDVYDEMD 215
Query: 544 FDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKGPVISNNNKITSPARINMKS 603
F++PIGKNGD YDRYLVRI EM +S KIIKQCI ++ KG V +++ K+T P R MK
Sbjct: 216 FEVPIGKNGDCYDRYLVRILEMYESIKIIKQCI--VKMPKGQVKTDDPKLTPPTRGKMKE 273
Query: 604 NMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQ 663
+ME +IHHFKL+TEG+ VP+GE Y VE PKGEFG+YL S G NKPYR +I++PGFAHLQ
Sbjct: 274 SMEAMIHHFKLYTEGYDVPIGETYKAVEAPKGEFGVYLYSQGGNKPYRCRIKAPGFAHLQ 333
Query: 664 SLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
L+ M GH+I+DV+TII T DIVFGEIDR
Sbjct: 334 GLNFMSKGHLIADVITIIATLDIVFGEIDR 363
>gi|114800277|ref|YP_760449.1| NADH dehydrogenase subunit D [Hyphomonas neptunium ATCC 15444]
gi|123028033|sp|Q0C1E4.1|NUOD_HYPNA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|114740451|gb|ABI78576.1| NADH-quinone oxidoreductase, D subunit [Hyphomonas neptunium ATCC
15444]
Length = 392
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 219/414 (52%), Positives = 299/414 (72%), Gaps = 26/414 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
+ + LNFGPQHPAAHGVLR+IL+L+GE+V + D HIGLLHR TEKL E +TYLQ +PY D
Sbjct: 4 RKFTLNFGPQHPAAHGVLRMILDLDGEIVTRVDSHIGLLHRGTEKLLEYKTYLQGMPYFD 63
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDY + M EHA+ +AIEKLL +++P RA IRVM+ EI R+++HL+ +G+ +D+GA+
Sbjct: 64 RLDYCAPMNQEHAWCLAIEKLLGVEVPRRASIIRVMYSEIGRIMSHLLNVGTGVMDVGAL 123
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
+ + F ERE L YE SG+RMHAAY+RPGGV++DLP+
Sbjct: 124 TPITWCFEEREKLCVFYERASGSRMHAAYFRPGGVHQDLPQ------------------- 164
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
L+D I + ++FP +D+ E L+T+NRI+KQR V IGVV L GF+G M
Sbjct: 165 ------RLIDDIATWCDQFPGKLDQIEGLVTENRIFKQRNVDIGVVDQRTILDWGFSGVM 218
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL- 579
+RGSG+ WDLR+ QPYE Y+ L+F +P+G++GD+YDRY+ R++EMR+S KII QCI +
Sbjct: 219 VRGSGLAWDLRRSQPYECYSELDFKVPVGRHGDNYDRYVCRMDEMRESVKIILQCIDLMA 278
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ GPV+ +K++ P R +MK++ME LIHHFKL+TEGF+VP GE Y+ VE PKGEFG+
Sbjct: 279 KDGPGPVLLAGSKLSPPRRADMKNSMEALIHHFKLYTEGFHVPEGECYAAVEAPKGEFGV 338
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLV+DG N+PYR KIR+PG+ HLQ++ + GH ++DV ++GT DIVFGEIDR
Sbjct: 339 YLVADGTNRPYRAKIRAPGYPHLQAMDYLCKGHQLADVSAVLGTLDIVFGEIDR 392
>gi|371907990|emb|CAP18813.1| NADH dehydrogenase subunit 7, partial (mitochondrion) [Tribonema
vulgare]
Length = 373
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 227/403 (56%), Positives = 290/403 (71%), Gaps = 31/403 (7%)
Query: 283 YKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRL 342
+ +NFGPQHPAAHGVLRL+L+L+GE+V+ ADPHIGLLHR TEKL E +TYLQ+LPY DRL
Sbjct: 1 FTINFGPQHPAAHGVLRLVLDLKGEIVKHADPHIGLLHRGTEKLIESKTYLQALPYFDRL 60
Query: 343 DYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGV 402
DYVS++ EH Y + +E LL K+PIR+ YIRV+F EITR+LNHL+ +G H++D+GA+
Sbjct: 61 DYVSIISQEHTYSLGVEALLQAKVPIRSIYIRVIFAEITRILNHLLAVGCHAIDVGAITP 120
Query: 403 LLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNE 462
L+AF ERE L++ YE VSGAR+HAAY+RPGGV DLP
Sbjct: 121 FLWAFEEREKLIEFYERVSGARIHAAYFRPGGVSIDLPL--------------------- 159
Query: 463 NRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLR 522
LLD I F N+F +DE E +LT NRIWKQRLV IGVV+ A + GF+G +LR
Sbjct: 160 ----GLLDDIFVFINQFSTRLDEIEEILTLNRIWKQRLVDIGVVTAHDAKNFGFSGVILR 215
Query: 523 GSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSN 582
GSG+ WDLR QPY+IY L+ F +P+G GD YDRYL+R+EEMRQS I+ QC+ N
Sbjct: 216 GSGLNWDLRISQPYDIYPLVKFKVPVGTKGDCYDRYLLRLEEMRQSLSIVLQCL-----N 270
Query: 583 KGPVIS-NNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYL 641
+ P+ S N I+ P+R +K +ME LIHHFKL+TEG+ V GE Y+ E PKGEFG+YL
Sbjct: 271 QIPIGSIRNENISPPSRTILKFSMEGLIHHFKLYTEGYTVLSGETYTATEAPKGEFGVYL 330
Query: 642 VSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQ 684
VS+ N+PYR KI++PGF HLQ+L+ + GH+I+DVVTIIGTQ
Sbjct: 331 VSNNTNRPYRCKIKAPGFNHLQALNFICQGHIIADVVTIIGTQ 373
>gi|254466915|ref|ZP_05080326.1| NADH dehydrogenase (quinone), D subunit [Rhodobacterales bacterium
Y4I]
gi|206687823|gb|EDZ48305.1| NADH dehydrogenase (quinone), D subunit [Rhodobacterales bacterium
Y4I]
Length = 412
Score = 464 bits (1193), Expect = e-127, Method: Compositional matrix adjust.
Identities = 226/415 (54%), Positives = 295/415 (71%), Gaps = 26/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ +NFGPQHPAAHGVLRL+LEL+GE+V + DPHIGLLHR TEKL E RTYLQ+LPY
Sbjct: 24 KIRNFNINFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNLPY 83
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYV+ M EHA+ +AIEKL +P R Q IRV++ EI R+LNHL+ + + ++D+G
Sbjct: 84 FDRLDYVAPMNQEHAWCLAIEKLTGTVVPRRGQLIRVLYSEIGRVLNHLLNVTTQAMDVG 143
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L+ YE GAR+HAAY+RPGGV++DLP+ +
Sbjct: 144 ALTPPLWGFEEREKLMIFYERACGARLHAAYFRPGGVHQDLPDDLLDDIDL--------- 194
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+ FPK +D+ + LLT+NRI+KQR IGVV+ + GF+G
Sbjct: 195 ----------------WAMEFPKVLDDIDGLLTENRIFKQRNCDIGVVTEDDIQKYGFSG 238
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG+ WDLR+ QPYE Y+ F +PIGKNGD YDRYL R+EEMRQS II+Q I
Sbjct: 239 VMVRGSGLAWDLRRAQPYECYDEFEFQVPIGKNGDCYDRYLCRMEEMRQSTSIIRQAIAK 298
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR G V++ K++ P R +MK++ME LIHHFKL+TEGF+VP GE+Y+ VE PKGEFG
Sbjct: 299 LREATGDVMA-RGKLSPPKRGDMKTSMESLIHHFKLYTEGFHVPAGEVYAAVEAPKGEFG 357
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLV+DG+NKPYR KIR+PGF HLQ++ + GH ++DV IIGT D+VFGEIDR
Sbjct: 358 VYLVADGSNKPYRSKIRAPGFLHLQAMDHVAKGHQLADVAAIIGTMDVVFGEIDR 412
>gi|294677057|ref|YP_003577672.1| NADH-quinone oxidoreductase subunit D [Rhodobacter capsulatus SB
1003]
gi|6647646|sp|O07310.2|NUOD_RHOCA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|3282562|gb|AAC24988.1| NUOD [Rhodobacter capsulatus]
gi|294475877|gb|ADE85265.1| NADH-quinone oxidoreductase, D subunit [Rhodobacter capsulatus SB
1003]
Length = 413
Score = 463 bits (1192), Expect = e-127, Method: Compositional matrix adjust.
Identities = 224/415 (53%), Positives = 290/415 (69%), Gaps = 26/415 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
I+++ +NFGPQHPAAHGVLR++LEL+GE+V +ADPHIGLLHR TEKL E RTYLQ+ PY
Sbjct: 24 IRNFNINFGPQHPAAHGVLRMVLELDGEIVERADPHIGLLHRGTEKLMESRTYLQNTPYF 83
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDYV+ M EHA+ +AIEKL +P RA IRV+F EI R+LNHL+ + + ++D+GA
Sbjct: 84 DRLDYVAPMNQEHAWCLAIEKLTGTAVPRRASIIRVLFSEIGRILNHLLNVTTQAMDVGA 143
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F ERE L+ YE GAR+HA Y+RPGGV++DLP
Sbjct: 144 LTPPLWGFEEREKLMIFYERACGARLHANYFRPGGVHQDLPP------------------ 185
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L+D IE + FP+ +D+ E LLT+NRI+KQR I +++ G++G
Sbjct: 186 -------DLIDDIEIWAKAFPQVLDDIEGLLTENRIFKQRNADICIITEAEIEKWGYSGV 238
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+RGSG+ WDLR+ QPYE Y+ +F + +GKNGD YDRYLVR+ EMR+S KII Q L
Sbjct: 239 MVRGSGLAWDLRRAQPYECYDEFDFKVAVGKNGDCYDRYLVRMAEMRESTKIILQACAKL 298
Query: 580 RSNKGPV-ISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
R+ G I K+T P R MK++ME LIHHFKL+TEGF VP GE+Y+ VE PKGEFG
Sbjct: 299 RAPDGQGDILARGKLTPPKRAEMKTSMEALIHHFKLYTEGFKVPAGEVYAAVEAPKGEFG 358
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLV+DG NKPYR KIR+PG+AHLQS+ + GH ++DV IIGT D+VFGEIDR
Sbjct: 359 VYLVADGTNKPYRAKIRAPGYAHLQSIDAVAKGHQLADVSAIIGTMDVVFGEIDR 413
>gi|170113910|ref|XP_001888153.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164636820|gb|EDR01111.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 459
Score = 463 bits (1192), Expect = e-127, Method: Compositional matrix adjust.
Identities = 226/415 (54%), Positives = 291/415 (70%), Gaps = 31/415 (7%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++ + +NFGPQHPAAHGVLR+ILEL GE + +ADPHIGLLHR TEKL E +TY+Q+LPY
Sbjct: 76 KMRHFTVNFGPQHPAAHGVLRMILELNGEEILRADPHIGLLHRGTEKLIEYKTYIQALPY 135
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE Y +A+EKLLNI++P RAQ+IRV+F EITR+LNHLM I +H +D+G
Sbjct: 136 FDRLDYVSMMTNELCYSLAVEKLLNIEVPARAQWIRVLFGEITRILNHLMAILTHVMDVG 195
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+ L+ F ERE L++ YE VSGAR+HAAY RPGGV DLP
Sbjct: 196 GLTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVAFDLPH----------------- 238
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F +DE E ++T NRIWK+R +GIG V+ ++AL F+G
Sbjct: 239 --------GLLDDIFKWGTQFSSRVDEIEEVVTGNRIWKERTIGIGPVTAKQALDYSFSG 290
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ WDLRK PY+ Y+ + FDIP+GKNGD YDRYL R++EMR+S +II Q +
Sbjct: 291 VMLRGSGIAWDLRKVAPYDKYDEVEFDIPVGKNGDCYDRYLCRVQEMRESLRIISQALN- 349
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ G V +++K+ P R MK +ME LIHHFK+F+EG+ VP GE YS +E PKGE G
Sbjct: 350 -KITPGAVKVDDHKLVPPPRAMMKESMESLIHHFKIFSEGYSVPPGETYSAIEAPKGEMG 408
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG+N+PYR IR+PGFAHL M+ HM++D V IIGT GE+DR
Sbjct: 409 VYLVSDGSNRPYRCSIRAPGFAHLAGSDFMMRQHMLADAVAIIGT----MGEVDR 459
>gi|407327637|dbj|BAM45347.1| NADH-quinone oxidoreductase subunit C, D [uncultured bacterium]
Length = 583
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 244/584 (41%), Positives = 337/584 (57%), Gaps = 90/584 (15%)
Query: 158 KILRDHVNFRFEQLIDLCGIDYSIYNKNINSDNSNKNLRFAIVLHLLSLNYNWRLRVRV- 216
+ L D F+ L D+C +DY LRF +V HL SL RLR++
Sbjct: 42 RYLHDAPEGAFDHLTDICSVDYP-----------EDQLRFEVVYHLHSLPLGQRLRLKTR 90
Query: 217 FAENNELPRLHSITSLWSSANWYEREAFDLFGIFFDGHDDLRRLLTDYGFV-GHPFRKDF 275
AE++ P + S+T +W A + ERE +D+ GI F GH DLRR+L + G+P RKDF
Sbjct: 91 IAEDD--PTIASVTGVWKGAEFLEREVYDMMGIHFSGHPDLRRILLPEDYAEGYPLRKDF 148
Query: 276 PVIEIKSYK---------------------------------------------LNFGPQ 290
P E + ++ LN GPQ
Sbjct: 149 PT-EGRGWRSQFDFIPRFDEPSRDVPESEVTEQQRNTFGADPGVSGSQRKEELLLNMGPQ 207
Query: 291 HPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCN 350
HP+ HGVLR++L L+GE V KA P +G LHR EKLAE Y+Q +P+ DRLDYV M N
Sbjct: 208 HPSTHGVLRVVLVLDGERVVKATPDLGYLHRGVEKLAEGLAYMQMIPHTDRLDYVCAMSN 267
Query: 351 EHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLLYAFRER 410
+AYV A+EKLL I +PIRA+YIR + E+ R++ HL W+G+ +LDIGAM V + FRER
Sbjct: 268 NYAYVRAVEKLLEITVPIRAEYIRTIVAEMQRIIGHLFWLGTQALDIGAMTVFFWTFRER 327
Query: 411 EDLLDCYEAVSGARMHAAYYRPGGVYRDL-PEIMPQYKSSIIRNNKATKILNENRQGSLL 469
E LLD +E + GAR+ YYR GGV D PE++ + K+
Sbjct: 328 EVLLDMFEKLCGARLTLNYYRIGGVDSDFTPELVQRMKA--------------------- 366
Query: 470 DFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGSGVKWD 529
F FP+ + EY++L+ NRIW R + V+S E A+S G TGP+LRGSGV +D
Sbjct: 367 -----FLEIFPEKVKEYDSLIASNRIWLGRTKNVAVLSAEDAISFGCTGPVLRGSGVAYD 421
Query: 530 LRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKGPVISN 589
+RK +PY +Y+ + +D+PIGKNGD+YDRY +R+EEMRQS +II QC + + GP+++
Sbjct: 422 VRKAEPYGVYDKVEWDVPIGKNGDTYDRYWIRMEEMRQSARIIAQCFDQMPA--GPIMAE 479
Query: 590 NNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKP 649
+ P + + +ME LIHHF ++T+G P E Y E PKGE G ++VSDG+ +P
Sbjct: 480 APQYIPPPKELVMRDMESLIHHFIIYTQGIKPPKAETYCASEAPKGELGFFIVSDGSARP 539
Query: 650 YRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YR+KIRSP F H+ + M G++ISD++TI GT D+V GE DR
Sbjct: 540 YRLKIRSPSFVHMGAFDHMARGYLISDIITIFGTYDVVMGECDR 583
>gi|448536640|ref|XP_003871159.1| Nuc2 NADH-ubiquinone oxidoreductase [Candida orthopsilosis Co
90-125]
gi|380355515|emb|CCG25034.1| Nuc2 NADH-ubiquinone oxidoreductase [Candida orthopsilosis]
Length = 483
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 218/415 (52%), Positives = 293/415 (70%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ + +NFGPQHPAAHGVLRLILEL GE + ++DPH+GLLHR TEKL E +TY+Q+LPY
Sbjct: 96 KIRHFTINFGPQHPAAHGVLRLILELHGEEIIRSDPHVGLLHRGTEKLIETKTYMQALPY 155
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLN+++P+RA+YIR +F EITR+LNH M + +H +D+G
Sbjct: 156 FDRLDYVSMMTNEQVFALAVEKLLNVEVPLRAKYIRTLFGEITRVLNHCMSVLTHIMDVG 215
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+ L+ F ERE L++ YE VSGAR+H+AY RPGGV +DLP
Sbjct: 216 GLTPFLWGFEEREKLMEFYERVSGARLHSAYVRPGGVAQDLP------------------ 257
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E L TDNRIWK+R + +G V+ + AL+ +G
Sbjct: 258 -------AGLLDDIYMWATQFGDRIDEIEELCTDNRIWKERTINVGTVTADDALNYSCSG 310
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ +D+RK QPY+ Y+L++FDI +G NGD YDRYL+R+ E RQS +II QCI
Sbjct: 311 VMLRGSGIPFDVRKSQPYDAYDLVDFDIAVGLNGDCYDRYLIRMAEFRQSLRIIFQCIND 370
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ +GPV + ++ P R MK +ME LIHHF LFT+G+ VP GE Y+ +E PKGE
Sbjct: 371 M--PQGPVKVEDYNVSPPPRSLMKEDMEALIHHFLLFTKGYAVPQGETYTAIEAPKGEMA 428
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDG+ +PYR KIR+PGFAHL + + G++++D V IIGT D+VFGE+DR
Sbjct: 429 VYVVSDGSERPYRCKIRAPGFAHLGAFDHIARGNLLADAVAIIGTMDLVFGEVDR 483
>gi|354548591|emb|CCE45328.1| hypothetical protein CPAR2_703410 [Candida parapsilosis]
Length = 485
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 219/415 (52%), Positives = 293/415 (70%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ + +NFGPQHPAAHGVLRLILEL GE + ++DPH+GLLHR TEKL E +TY+Q+LPY
Sbjct: 98 KIRHFTINFGPQHPAAHGVLRLILELHGEEIIRSDPHVGLLHRGTEKLIETKTYMQALPY 157
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLNI++P+RA+YIR +F EITR+LNH M + +H +D+G
Sbjct: 158 FDRLDYVSMMTNEQVFALAVEKLLNIEVPLRAKYIRTLFGEITRVLNHCMSVLTHIMDVG 217
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+ L+ F ERE L++ YE VSGAR+H+AY RPGGV +DLP
Sbjct: 218 GLTPFLWGFEEREKLMEFYERVSGARLHSAYVRPGGVAQDLP------------------ 259
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E L TDNRIWK+R + +G V+ + AL+ +G
Sbjct: 260 -------SGLLDDIYMWATQFGDRIDEIEELCTDNRIWKERTINVGTVTADDALNYSCSG 312
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ +D+RK QPY+ Y+L++FDI +G NGD YDRYL+R+ E RQS +II QCI
Sbjct: 313 VMLRGSGIPFDVRKSQPYDAYDLVDFDIAVGLNGDCYDRYLIRMAEFRQSLRIIFQCIND 372
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ +GPV + ++ P R MK +ME LIHHF LFT+G+ VP GE Y+ +E PKGE
Sbjct: 373 M--PQGPVKVEDYNVSPPPRSLMKEDMEALIHHFLLFTKGYAVPQGETYTAIEAPKGEMA 430
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDG+ +PYR KIR+PGFAHL + + G++++D V IIGT D+VFGE+DR
Sbjct: 431 VYVVSDGSERPYRCKIRAPGFAHLGAFDHIARGNLLADAVAIIGTMDLVFGEVDR 485
>gi|313217537|emb|CBY38614.1| unnamed protein product [Oikopleura dioica]
Length = 476
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 221/415 (53%), Positives = 292/415 (70%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++ +LNFGPQHPAAHGVLRLILEL GE V + DPHIGLLHR TEKL E +TY Q+LPY
Sbjct: 89 KLETMQLNFGPQHPAAHGVLRLILELHGENVMRCDPHIGLLHRGTEKLIEYKTYNQALPY 148
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDY SMM NE + +A+EKL NI +P+RA+YIR MF EITR+LNH +++G +LD+G
Sbjct: 149 FDRLDYCSMMINEQCFSLAVEKLCNIDVPLRAKYIRTMFAEITRILNHTVFVGCGALDLG 208
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM + F ERE L + YE V GARMHAAY RPGGV DLP
Sbjct: 209 AMTPFFWLFEEREKLYEFYERVCGARMHAAYVRPGGVNLDLPI----------------- 251
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L D I D+ RF +DE E +LT+NR+W+ R V +G+VS + A G +G
Sbjct: 252 --------GLCDDIYDWAKRFSSRLDEVEEMLTENRVWRARNVDVGIVSYDSAQEWGMSG 303
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+KWD+RK PY+ Y+L+ FD+PIG GD +DRYL R+EEMR+S +II QC+
Sbjct: 304 CMLRGSGIKWDIRKVAPYDAYDLVEFDVPIGTRGDCFDRYLCRMEEMRESIRIIHQCLNQ 363
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ +G + +++ K T P R++MK++ME +IHHFK +TEG+ VP G Y+ VE PKGEFG
Sbjct: 364 M--PEGDIKADDRKFTPPNRLSMKNDMEAVIHHFKFWTEGYQVPPGATYTAVEAPKGEFG 421
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG ++PYR KI++PGFAHL ++ + +G+ + D+ I+GT D+VFGEIDR
Sbjct: 422 VYLVSDGTSRPYRCKIKAPGFAHLGAIDHVATGNNLPDICGIVGTMDLVFGEIDR 476
>gi|313238400|emb|CBY13477.1| unnamed protein product [Oikopleura dioica]
Length = 476
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 221/415 (53%), Positives = 292/415 (70%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
++++ +LNFGPQHPAAHGVLRLILEL GE V + DPHIGLLHR TEKL E +TY Q+LPY
Sbjct: 89 KLETMQLNFGPQHPAAHGVLRLILELHGENVMRCDPHIGLLHRGTEKLIEYKTYNQALPY 148
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDY SMM NE + +A+EKL NI +P+RA+YIR MF EITR+LNH +++G +LD+G
Sbjct: 149 FDRLDYCSMMINEQCFSLAVEKLCNIDVPLRAKYIRTMFAEITRILNHTVFVGCGALDLG 208
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM + F ERE L + YE V GARMHAAY RPGGV DLP
Sbjct: 209 AMTPFFWLFEEREKLYEFYERVCGARMHAAYIRPGGVNLDLPI----------------- 251
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
L D I D+ RF +DE E +LT+NR+W+ R V +G+VS + A G +G
Sbjct: 252 --------GLCDDIYDWAKRFSSRLDEVEEMLTENRVWRARNVDVGIVSYDSAQEWGMSG 303
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+KWD+RK PY+ Y+L+ FD+PIG GD +DRYL R+EEMR+S +II QC+
Sbjct: 304 CMLRGSGIKWDIRKVAPYDAYDLVEFDVPIGTRGDCFDRYLCRMEEMRESIRIIHQCLNQ 363
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ +G + +++ K T P R++MK++ME +IHHFK +TEG+ VP G Y+ VE PKGEFG
Sbjct: 364 M--PEGDIKADDRKFTPPNRLSMKNDMEAVIHHFKFWTEGYQVPPGATYTAVEAPKGEFG 421
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG ++PYR KI++PGFAHL ++ + +G+ + D+ I+GT D+VFGEIDR
Sbjct: 422 VYLVSDGTSRPYRCKIKAPGFAHLGAIDHVATGNNLPDICGIVGTMDLVFGEIDR 476
>gi|371908002|emb|CAP18819.1| NADH dehydrogenase subunit 7, partial (mitochondrion)
[Bumilleriopsis filiformis]
Length = 360
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 226/389 (58%), Positives = 285/389 (73%), Gaps = 29/389 (7%)
Query: 290 QHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMC 349
QHPAAHGVLRL+L+L+GE+V +ADPHIGLLHR TEKL E +TYLQ+LPY DRLDYVS++
Sbjct: 1 QHPAAHGVLRLVLDLKGEIVERADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSIIG 60
Query: 350 NEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLLYAFRE 409
EH Y +A+E LL KIPIR+ YIRV+F EITR+LNHL+ +G H++D+GA+ L+AF E
Sbjct: 61 QEHTYSLAVENLLQCKIPIRSIYIRVIFAEITRILNHLLAVGCHAIDVGAITPFLWAFEE 120
Query: 410 REDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENRQGSLL 469
RE L++ YE VSGARMHAAY+RPGGV DLP L+
Sbjct: 121 REKLIEFYERVSGARMHAAYFRPGGVSIDLPY-------------------------GLI 155
Query: 470 DFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGSGVKWD 529
D I F +F +DE E +LT NRIWKQRLV IGVVS A+++GF+G MLRGSG+ WD
Sbjct: 156 DDIYVFIIQFSTRLDEIEEILTSNRIWKQRLVDIGVVSASDAIALGFSGVMLRGSGINWD 215
Query: 530 LRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKGPVISN 589
LR QPY+IY+ L+FDIP+G GD YDRYL+R+EEMRQS II QC+ + S GPV
Sbjct: 216 LRISQPYDIYSSLSFDIPVGTKGDCYDRYLLRVEEMRQSLSIIHQCLNNMPS--GPVKDE 273
Query: 590 NNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKP 649
N I+ P+R N+KS++E LIHHFKL+TEG VP GE Y+ E PKGEFG+YLVS+G N+P
Sbjct: 274 N--ISPPSRTNLKSSIEALIHHFKLYTEGVVVPSGETYTATEAPKGEFGVYLVSNGTNRP 331
Query: 650 YRIKIRSPGFAHLQSLSEMISGHMISDVV 678
YR KI++PGF HLQ+L+ + GH+++DVV
Sbjct: 332 YRCKIKAPGFNHLQALNFICKGHIVADVV 360
>gi|371908012|emb|CAP18824.1| NADH dehydrogenase subunit 7, partial (mitochondrion) [Botrydium
cystosum]
Length = 362
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 222/391 (56%), Positives = 289/391 (73%), Gaps = 29/391 (7%)
Query: 291 HPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCN 350
HPAAHGVLRL+L+L+GE+V +ADPHIGLLHR TEKL E +TYLQ+LPY DRLDYVS++
Sbjct: 1 HPAAHGVLRLVLDLKGEIVERADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSIIGQ 60
Query: 351 EHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLLYAFRER 410
E Y +A+EKLLN KIPIR+ YIRV+F EITR+LNHL+ +G H++DIGA+ L+AF ER
Sbjct: 61 EQTYSLAVEKLLNCKIPIRSIYIRVLFAEITRILNHLLAVGCHAIDIGAITPFLWAFEER 120
Query: 411 EDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENRQGSLLD 470
E L++ YE VSGAR+HAAY RPGGV DLP L+D
Sbjct: 121 EKLIEFYERVSGARIHAAYIRPGGVSIDLP-------------------------SGLID 155
Query: 471 FIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGSGVKWDL 530
I F +F +DE E +LT NRIWKQRLV IG+V+ AL++GF+G MLRGSG+ WDL
Sbjct: 156 DIYVFAMQFSTRLDEIEEILTSNRIWKQRLVDIGLVNASDALALGFSGVMLRGSGINWDL 215
Query: 531 RKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKGPVISNN 590
R QPY++Y+ ++F++P+G GD YDRYL+R+EE+RQS +II QC+ + GPV ++
Sbjct: 216 RVSQPYDVYSSIDFEVPLGTKGDCYDRYLIRLEEIRQSLRIIHQCLN--KIPLGPV--HD 271
Query: 591 NKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKPY 650
I+ P+R+N+KS++E LIHHFKL++EGF VP GE Y+ E PKGEFG+YLVS+G N+PY
Sbjct: 272 ENISPPSRVNLKSSIESLIHHFKLYSEGFVVPCGETYTATEAPKGEFGVYLVSNGTNRPY 331
Query: 651 RIKIRSPGFAHLQSLSEMISGHMISDVVTII 681
R KI++PGF HLQ+L M GH+++DVVTII
Sbjct: 332 RCKIKAPGFNHLQALDFMCKGHIVADVVTII 362
>gi|71021681|ref|XP_761071.1| hypothetical protein UM04924.1 [Ustilago maydis 521]
gi|46100635|gb|EAK85868.1| hypothetical protein UM04924.1 [Ustilago maydis 521]
Length = 498
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 229/440 (52%), Positives = 289/440 (65%), Gaps = 53/440 (12%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKAD-------------------------- 313
++ + +NFGPQHPAAHGVLRLILEL GE + + D
Sbjct: 86 LRHFTVNFGPQHPAAHGVLRLILELNGEEILRTDLAICKANIADSIQSCLFWPSGVCILQ 145
Query: 314 PHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYI 373
PH+GLLHR TEKL E +TY Q+LPY DRLDYVSMM NE Y A+EKLLNI++P RA++I
Sbjct: 146 PHVGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMTNELCYSRAVEKLLNIEVPERAKWI 205
Query: 374 RVMFDEITRLLNHLMWIGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPG 433
R MF EITR+LNH M + SH +D+G + L+AF ERE L++ YE VSGAR+HAAY RPG
Sbjct: 206 RTMFGEITRILNHCMAVLSHVMDVGGLTPFLWAFEEREKLMEFYERVSGARLHAAYVRPG 265
Query: 434 GVYRDLPEIMPQYKSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDN 493
GV DLP LLD I + +F +DE E ++T N
Sbjct: 266 GVAYDLPP-------------------------GLLDDIHKWATQFGSRVDEIEEVVTGN 300
Query: 494 RIWKQRLVGIGVVSPERALSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGD 553
RIWK R +GIG V+ + AL GF+G MLRGSG+ WD+RK PY+ Y+ + FD+P+GKNGD
Sbjct: 301 RIWKGRTIGIGKVTAQEALDYGFSGVMLRGSGIPWDIRKVAPYDAYDQVEFDVPVGKNGD 360
Query: 554 SYDRYLVRIEEMRQSNKIIKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFK 613
YDRYL R+EE RQS +II+QC+ + + G + +++K+ P R MK +ME LIHHFK
Sbjct: 361 CYDRYLCRVEEFRQSLRIIEQCLNKMPA--GQIKVDDHKLVPPPRATMKESMESLIHHFK 418
Query: 614 LFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHM 673
LF+EG+ VP GE YS +E PKGE G+YLVSDG N+PYR KIR+PGFAHL M H
Sbjct: 419 LFSEGYAVPPGETYSAIEAPKGEMGVYLVSDGTNRPYRCKIRAPGFAHLAGADFMARHHY 478
Query: 674 ISDVVTIIGTQDIVFGEIDR 693
I D+V IIGT D+VFGE+DR
Sbjct: 479 IPDMVAIIGTLDLVFGEVDR 498
>gi|448089604|ref|XP_004196852.1| Piso0_004078 [Millerozyma farinosa CBS 7064]
gi|448093904|ref|XP_004197883.1| Piso0_004078 [Millerozyma farinosa CBS 7064]
gi|359378274|emb|CCE84533.1| Piso0_004078 [Millerozyma farinosa CBS 7064]
gi|359379305|emb|CCE83502.1| Piso0_004078 [Millerozyma farinosa CBS 7064]
Length = 479
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 221/415 (53%), Positives = 291/415 (70%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ + +NFGPQHPAAHGVLRLILEL GE + ++DPH+GLLHR TEKL E +TY+Q+LPY
Sbjct: 92 KIRHFTINFGPQHPAAHGVLRLILELHGEEIVRSDPHVGLLHRGTEKLIESKTYMQALPY 151
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLN+++P+RA+YIR +F EITR+LNH M + SH +D+G
Sbjct: 152 FDRLDYVSMMTNELVFALAVEKLLNVEVPLRAKYIRTLFGEITRVLNHCMSVLSHIMDVG 211
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+ L+ F ERE L++ YE VSGAR+H+AY RPGGV +DLP
Sbjct: 212 GLTPFLWGFEEREKLMEFYERVSGARLHSAYVRPGGVAQDLP------------------ 253
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E L+TDNRIWK R +GVV+ E AL+ TG
Sbjct: 254 -------AGLLDDIYMWATQFGDRIDEVEELVTDNRIWKARTQDVGVVTAEDALNYSLTG 306
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ +D+RK QPY+ Y ++FD+P+G NGD YDRYL+R+ E RQS +II QCI
Sbjct: 307 VMLRGSGIPYDVRKAQPYDAYEYVDFDVPVGMNGDCYDRYLIRMAEFRQSLRIIFQCIND 366
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + KI+ P R MK +ME LIHHF LFT+G+ VP GE Y+ +E PKGE
Sbjct: 367 MPN--GPVKVEDFKISPPPRSLMKEDMEALIHHFLLFTKGYCVPQGETYTAIEAPKGEMA 424
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+V+D +PYR KIR+PGFAHL + + G++++D V IIGT D+VFGE+DR
Sbjct: 425 VYVVADNTERPYRCKIRAPGFAHLGAFDHISRGNLLADAVAIIGTMDLVFGEVDR 479
>gi|383644209|ref|ZP_09956615.1| NADH dehydrogenase subunit D [Sphingomonas elodea ATCC 31461]
Length = 409
Score = 460 bits (1184), Expect = e-126, Method: Compositional matrix adjust.
Identities = 214/414 (51%), Positives = 295/414 (71%), Gaps = 26/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
I +Y +NFGPQHPAAHGVLRL+ EL+GE++ + DPH+GLLHR TEKL E +TY Q+LPY
Sbjct: 22 IANYTINFGPQHPAAHGVLRLVTELDGEIIERIDPHVGLLHRGTEKLIEYKTYTQALPYF 81
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DR DY S + EH+YV+A+EKLL++++P+R QY+RV+F E+TR+ NH++ +GSH +D+GA
Sbjct: 82 DRFDYCSPLAMEHSYVLAVEKLLDLEVPLRGQYLRVLFAELTRICNHMLNLGSHVMDVGA 141
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
M L+ F RED L+ +E SGARMH+ YYR GGV +D+P K+
Sbjct: 142 MTPNLWMFEIREDCLNFFERASGARMHSNYYRVGGVRQDVP----------------VKL 185
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LN D E R P+ + +L+ +NRI+KQR V I VS E A+ GF+GP
Sbjct: 186 LN--------DIAEWLDTRLPQLFGDAISLVAENRIFKQRNVDIATVSREDAIKWGFSGP 237
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
M+R +G+ WD+R+ QPY++Y+ ++F+IP+G GD YDR++VR+EE+ QS +IIKQCI+ +
Sbjct: 238 MIRAAGIPWDIRRAQPYDVYDRVDFEIPVGTRGDCYDRFMVRVEEVYQSARIIKQCIQDM 297
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+GPV++ + K+ +P R MK +ME LIHHFKLFTEG++VP GE+Y E PKGEFG+
Sbjct: 298 --PEGPVLTLDRKVGAPKRGEMKQSMEALIHHFKLFTEGYHVPAGEVYVATESPKGEFGV 355
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVSDG NKPYR K+R F+HLQ++ M GHM++D+ I+G DIVFGE DR
Sbjct: 356 YLVSDGTNKPYRCKVRPTAFSHLQAMDFMSKGHMLADITAILGAMDIVFGECDR 409
>gi|402850662|ref|ZP_10898855.1| NADH-ubiquinone oxidoreductase chain D [Rhodovulum sp. PH10]
gi|402499099|gb|EJW10818.1| NADH-ubiquinone oxidoreductase chain D [Rhodovulum sp. PH10]
Length = 396
Score = 460 bits (1183), Expect = e-126, Method: Compositional matrix adjust.
Identities = 217/416 (52%), Positives = 299/416 (71%), Gaps = 27/416 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++S+ +NFGPQHP+AHGVLRL+L+L+GEV+ +ADPH+GLLHR TEKL E +TYLQ++PY
Sbjct: 6 VRSFTINFGPQHPSAHGVLRLLLDLDGEVIERADPHVGLLHRGTEKLIEYKTYLQAIPYF 65
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDY S M EH + MA+EKLL + +P RAQ +RV+F E+TR+ NH++ + + +LDIGA
Sbjct: 66 DRLDYSSPMSQEHVFCMAVEKLLGLAVPRRAQLLRVLFLELTRIKNHILNVTTGALDIGA 125
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+ F +RE ++ YE SGARMHA Y+RPGGV++D + P+
Sbjct: 126 LTPPLWGFEDREKIMGFYERASGARMHANYFRPGGVHQD---VTPK-------------- 168
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD I + + F + + + LLT+NRI+KQR+V IGV++ + GF+GP
Sbjct: 169 --------LLDDIAAWCDPFLSTLADLDALLTENRIFKQRMVDIGVMTLKDCWGWGFSGP 220
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
++R +G WDLR+ +PYE Y+ L FDIPIGK+GD YDRYLVR+EEMRQS +II+QC++ L
Sbjct: 221 LVRAAGAAWDLRRAEPYECYSELAFDIPIGKHGDCYDRYLVRMEEMRQSIRIIRQCLEKL 280
Query: 580 RS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
+GPV+ NNK P R MK +ME LIHHFKL+TEGF+VP GE+Y+ E PKGE
Sbjct: 281 AQPDGQGPVLPENNKYVPPRRGEMKRSMEALIHHFKLYTEGFHVPPGEVYAAAETPKGEL 340
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+YLV+DG NKPY+ KIR+ GFAHL ++ + GH+++D+ IIG+ D+VFGE+DR
Sbjct: 341 GVYLVADGTNKPYKCKIRATGFAHLSAIDFLSKGHLMADITAIIGSLDLVFGEVDR 396
>gi|50424435|ref|XP_460805.1| DEHA2F10120p [Debaryomyces hansenii CBS767]
gi|49656474|emb|CAG89146.1| DEHA2F10120p [Debaryomyces hansenii CBS767]
Length = 482
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 217/415 (52%), Positives = 293/415 (70%), Gaps = 27/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ + +NFGPQHPAAHGVLRLILEL GE + +ADPH+GLLHR TEKL E +TY+Q++PY
Sbjct: 95 KIRHFTINFGPQHPAAHGVLRLILELHGEEIVRADPHVGLLHRGTEKLIESKTYMQAIPY 154
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLNI++P+RA+YIR +F EITR+LNH M + SH +D+G
Sbjct: 155 FDRLDYVSMMTNELVFALAVEKLLNIEVPLRAKYIRTLFGEITRILNHCMSVLSHIMDVG 214
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+ L+ F ERE L++ YE VSGAR+H+ Y RPGGV +D+P
Sbjct: 215 GLTPFLWGFEEREKLMEFYERVSGARLHSNYVRPGGVSQDMPV----------------- 257
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F IDE E L+TDNRIW R +GVV+ E AL+ +G
Sbjct: 258 --------GLLDDIYMWATQFGDRIDETEELITDNRIWAARTKDVGVVTAEDALNYSLSG 309
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ +D+RK QPY+ Y L++FD+ +G NGD YDRYL+R+ E RQS +II QCI
Sbjct: 310 VMLRGSGIPYDIRKAQPYDAYELVDFDVAVGMNGDCYDRYLIRMAEFRQSLRIIYQCIND 369
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GP+ + + K+++P R MK +ME LIHHF L+T+G+ VP GE Y+ +E PKGE
Sbjct: 370 MPN--GPIKTEDFKVSAPPRSMMKEDMEALIHHFLLYTKGYAVPQGETYTAIEAPKGEMA 427
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+Y+VSDG+ +PYR KIR+PGFAHL + + G++++D V IIGT D+VFGE+DR
Sbjct: 428 VYVVSDGSERPYRCKIRAPGFAHLGAFDHISRGNLLADAVAIIGTMDLVFGEVDR 482
>gi|374331780|ref|YP_005081964.1| NADH dehydrogenase subunit 7 [Pseudovibrio sp. FO-BEG1]
gi|359344568|gb|AEV37942.1| NADH dehydrogenase subunit 7 [Pseudovibrio sp. FO-BEG1]
Length = 372
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 224/397 (56%), Positives = 287/397 (72%), Gaps = 25/397 (6%)
Query: 297 VLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVM 356
+LRL+LEL+GEVV + DPHIGLLHR TEKL E +TYLQ++PY DRLDYV+ M EHAY +
Sbjct: 1 MLRLVLELDGEVVTRVDPHIGLLHRGTEKLIEHKTYLQAVPYFDRLDYVAPMNQEHAYAL 60
Query: 357 AIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLLYAFREREDLLDC 416
A+E+LL I++P R Q IRV++ EI RLL+HL+ + + ++D+GA+ L+ F RE+L+
Sbjct: 61 AVERLLGIEVPKRGQLIRVLYSEIGRLLSHLLNVTTQAMDVGALTPPLWGFEPREELMGF 120
Query: 417 YEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENRQGSLLDFIEDFT 476
YE GARMHAAY RPGGV++DLP+ LLD + ++
Sbjct: 121 YERGCGARMHAAYVRPGGVHQDLPQ-------------------------DLLDDMWNWC 155
Query: 477 NRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGSGVKWDLRKKQPY 536
+ F K +D+ E LLTDNRI+KQR V IGVV + A +MGF+G M+RGSG KWDLRK QPY
Sbjct: 156 DPFLKTLDDIEGLLTDNRIFKQRNVDIGVVDLDEAWAMGFSGVMVRGSGAKWDLRKSQPY 215
Query: 537 EIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKGPVISNNNKITSP 596
E Y+ + FDI IGKNGD YDRYL+R+ EM QS +I+KQC++ L GPV S + K+ P
Sbjct: 216 ECYDEMEFDIAIGKNGDCYDRYLIRMFEMHQSVRIMKQCLEMLGKETGPVSSTDGKVVPP 275
Query: 597 ARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRS 656
R MK +ME LIHHFKL+TEG+ VP GEIY+ VE PKGEFG+YLVSDG NKPYR KI++
Sbjct: 276 KRGEMKRSMEALIHHFKLYTEGYKVPEGEIYAAVEAPKGEFGVYLVSDGTNKPYRCKIKA 335
Query: 657 PGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
PGFAHLQ+L + GHM++DV +IG+ DIVFGEIDR
Sbjct: 336 PGFAHLQALDYLCRGHMLADVAAVIGSIDIVFGEIDR 372
>gi|371907986|emb|CAP18146.1| NADH dehydrogenase subunit 7, partial (mitochondrion) [Xanthonema
tribonematoides]
Length = 354
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 222/381 (58%), Positives = 280/381 (73%), Gaps = 29/381 (7%)
Query: 286 NFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYV 345
NFGPQHPAAHGVLRL+L+L+GE+V +ADPHIGLLHR TEKL E +TYLQ+LPY DRLDYV
Sbjct: 1 NFGPQHPAAHGVLRLVLDLKGEIVERADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYV 60
Query: 346 SMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLLY 405
SM+ EH Y +A+E LL K+PIR+ YIRV+F EITR+LNHL+ +G H++D+GA+ L+
Sbjct: 61 SMIGQEHTYSLAVENLLQCKVPIRSIYIRVIFAEITRILNHLLAVGCHAIDVGAITPFLW 120
Query: 406 AFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENRQ 465
AF ERE L++ YE VSGARMHAAY+RPGGV DLP
Sbjct: 121 AFEEREKLIEFYERVSGARMHAAYFRPGGVSIDLPY------------------------ 156
Query: 466 GSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGSG 525
L+D I F +F +DE E +LT NRIWKQRLV IGVVS A+++GF+G MLRGSG
Sbjct: 157 -GLIDDIYVFIMQFSTRLDEIEEILTSNRIWKQRLVDIGVVSASDAIALGFSGVMLRGSG 215
Query: 526 VKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKGP 585
+ WDLR QPY++Y+ LNF+IP+G GD YDRYL+R+EE+RQS II QC+ + + GP
Sbjct: 216 INWDLRISQPYDVYSSLNFEIPVGTKGDCYDRYLLRVEEIRQSLSIIHQCLNGIPN--GP 273
Query: 586 VISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDG 645
V N I+ P+R N+KS++E LIHHFKL+TEG VP GE Y+ E PKGEFG+YLVS+G
Sbjct: 274 VKDEN--ISPPSRTNLKSSIEALIHHFKLYTEGVVVPSGETYTATEAPKGEFGVYLVSNG 331
Query: 646 ANKPYRIKIRSPGFAHLQSLS 666
N+PYR KI++PGF HLQ+L+
Sbjct: 332 TNRPYRCKIKAPGFNHLQALN 352
>gi|194908591|ref|XP_001981800.1| GG11402 [Drosophila erecta]
gi|190656438|gb|EDV53670.1| GG11402 [Drosophila erecta]
Length = 523
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 228/412 (55%), Positives = 284/412 (68%), Gaps = 33/412 (8%)
Query: 285 LNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDY 344
+NFGP HPAAHGVLR+ILEL+ E V ADPHIGLLHR TEKL E +TY Q+LPY DRLDY
Sbjct: 142 INFGPAHPAAHGVLRMILELDNETVLNADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 201
Query: 345 VSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLL 404
VS M NE AY +A+EKLLN+++P RA++IR MF EI RL NH M IGS LD GA+ L
Sbjct: 202 VSCMANELAYCLAVEKLLNVEVPRRAKFIRTMFSEIMRLTNHTMAIGSSVLDCGAITPLF 261
Query: 405 YAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENR 464
+ F ERE L + E SGAR+HAAY RPGGV D+P
Sbjct: 262 WLFEEREKLYEFSERASGARLHAAYIRPGGVASDIP------------------------ 297
Query: 465 QGSLLDFIED---FTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPML 521
L F+ D F N+F +DE E ++TDNRIW+ R +GIGV+S AL+ G TGP+L
Sbjct: 298 ----LGFLHDLYQFINQFNDRLDEVEDVVTDNRIWRMRNIGIGVISAHDALNYGCTGPVL 353
Query: 522 RGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRS 581
R +GVKWDLRK+QPY+ Y+ ++FD+ +G NGD YDRYLVR+ EMR+S IIKQCI R
Sbjct: 354 RATGVKWDLRKQQPYDAYDEMDFDVVVGSNGDCYDRYLVRMREMRESVNIIKQCID--RM 411
Query: 582 NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYL 641
G + ++ KI P R MK MEDLIHHFK F++GF VP G+ YS VE PKGEFG +L
Sbjct: 412 PPGEIKVDDLKICPPQRSRMKEGMEDLIHHFKHFSQGFRVPPGQTYSAVESPKGEFGAFL 471
Query: 642 VSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+SDG+++PYR KIR +AHL +++M H+++DVV IIG+ DIVFGEIDR
Sbjct: 472 ISDGSSRPYRCKIRPASYAHLALMAKMAPAHLLADVVAIIGSLDIVFGEIDR 523
>gi|195504349|ref|XP_002099040.1| GE23599 [Drosophila yakuba]
gi|194185141|gb|EDW98752.1| GE23599 [Drosophila yakuba]
Length = 523
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 228/412 (55%), Positives = 283/412 (68%), Gaps = 33/412 (8%)
Query: 285 LNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDY 344
+NFGP HPAAHGVLR+ILEL+ E V ADPHIGLLHR TEKL E +TY Q+LPY DRLDY
Sbjct: 142 INFGPAHPAAHGVLRMILELDNETVLNADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 201
Query: 345 VSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLL 404
VS M NE AY +A+EKLLN+++P RA+YIR MF EI RL NH M IGS LD GA+ L
Sbjct: 202 VSCMANELAYCLAVEKLLNVEVPPRAKYIRTMFSEIMRLTNHTMAIGSSVLDCGAITPLF 261
Query: 405 YAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENR 464
+ F ERE L + E SGAR+HAAY RPGGV D+P
Sbjct: 262 WLFEEREKLYEFSERASGARLHAAYIRPGGVASDIP------------------------ 297
Query: 465 QGSLLDFIED---FTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPML 521
L F+ D F N+F +DE E ++TDNRIW+ R +GIGV+S AL+ G TGP+L
Sbjct: 298 ----LGFMHDLYQFINQFNHRLDEVEDVVTDNRIWRMRNIGIGVISAHDALNYGCTGPVL 353
Query: 522 RGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRS 581
R +GVKWDLRK+QPY+ Y+ ++FD+ +G NGD YDRYLVR+ EMR+S IIKQCI R
Sbjct: 354 RATGVKWDLRKQQPYDAYDEMDFDVVVGSNGDCYDRYLVRMREMRESVNIIKQCID--RM 411
Query: 582 NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYL 641
G + ++ KI P R MK MEDLIHHFK F++GF VP G+ Y VE PKGEFG +L
Sbjct: 412 PPGEIKVDDLKICPPQRSRMKEGMEDLIHHFKHFSQGFRVPPGQTYCAVESPKGEFGAFL 471
Query: 642 VSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+SDG+++PYR KIR +AHL +++M H+++DVV IIG+ DIVFGEIDR
Sbjct: 472 ISDGSSRPYRCKIRPASYAHLALMAKMAPAHLLADVVAIIGSLDIVFGEIDR 523
>gi|85857674|gb|ABC86372.1| IP11827p [Drosophila melanogaster]
Length = 530
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 227/412 (55%), Positives = 284/412 (68%), Gaps = 33/412 (8%)
Query: 285 LNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDY 344
+NFGP HPAAHGVLR+ILEL+ E V ADPHIGLLHR TEKL E +TY Q+LPY DRLDY
Sbjct: 149 INFGPAHPAAHGVLRMILELDNETVLNADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 208
Query: 345 VSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLL 404
VS M NE AY +A+EKLLN+++P RA+YIR MF EI RL NH M IGS LD GA+ L
Sbjct: 209 VSCMANELAYCLAVEKLLNVEVPRRAKYIRTMFSEIMRLTNHTMAIGSSVLDCGAITPLF 268
Query: 405 YAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENR 464
+ F ERE L + E SGAR+HAAY RPGGV D+P
Sbjct: 269 WLFEEREKLYEFSERASGARLHAAYIRPGGVASDIP------------------------ 304
Query: 465 QGSLLDFIED---FTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPML 521
L F+ D F N+F + +DE E ++TDNRIW+ R +GIGV+S AL+ G TGP+L
Sbjct: 305 ----LGFLHDLYQFINQFNERLDEVEDVVTDNRIWRMRNIGIGVISAHDALNYGCTGPVL 360
Query: 522 RGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRS 581
R +GVKWDLRK+QPY+ Y+ ++FD+ +G NGD YDRYLVR+ EMR+S IIKQCI +
Sbjct: 361 RATGVKWDLRKQQPYDAYDEMDFDVVVGSNGDCYDRYLVRMREMRESVNIIKQCIDAM-- 418
Query: 582 NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYL 641
G + ++ KI P R MK MEDLIHHFK F++GF VP G+ Y VE PKGEFG +L
Sbjct: 419 PPGEIKVDDLKICPPQRSKMKEGMEDLIHHFKHFSQGFRVPPGQTYCAVESPKGEFGAFL 478
Query: 642 VSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+SDG+++PYR KIR +AHL +++M H+++DVV IIG+ DIVFGEIDR
Sbjct: 479 ISDGSSRPYRCKIRPASYAHLALMAKMAPAHLLADVVAIIGSLDIVFGEIDR 530
>gi|371908010|emb|CAP18823.1| NADH dehydrogenase subunit 7, partial (mitochondrion) [Botrydium
granulatum]
Length = 353
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 280/382 (73%), Gaps = 29/382 (7%)
Query: 287 FGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVS 346
FGPQHPAAHGVLRL+L+L+GE+V +ADPHIGLLHR TEKL E +TYLQ+LPY DRLDYVS
Sbjct: 1 FGPQHPAAHGVLRLVLDLKGEIVERADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVS 60
Query: 347 MMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLLYA 406
++ E Y +A+EKLLN K+PIR+ YIRV+F EITR+LNHL+ +G H++DIGA+ L+A
Sbjct: 61 IIGQEQTYSLAVEKLLNCKVPIRSIYIRVLFAEITRILNHLLAVGCHAIDIGAITPFLWA 120
Query: 407 FREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENRQG 466
F ERE L++ YE VSGARMHAAY RPGGV DLP
Sbjct: 121 FEEREKLIEFYERVSGARMHAAYIRPGGVSIDLPS------------------------- 155
Query: 467 SLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGSGV 526
L+D I F +F +DE E +LT NRIWKQRLV IGVV+ AL++GF+G MLRGSG+
Sbjct: 156 GLMDDIYVFAIQFSTRLDEIEEILTSNRIWKQRLVDIGVVNASDALALGFSGVMLRGSGI 215
Query: 527 KWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKGPV 586
WDLR QPY++Y ++F++P+G GD YDRYL+R+EE+RQS KII QC+ + GPV
Sbjct: 216 NWDLRVSQPYDVYGSIDFEVPVGTKGDCYDRYLIRLEEIRQSLKIIHQCLNQI--PLGPV 273
Query: 587 ISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGA 646
++ I+ P+R N+KS++E LIHHFKL++EGF VP GE Y+ E PKGEFG+YLVS+G
Sbjct: 274 --HDENISPPSRTNLKSSIESLIHHFKLYSEGFVVPCGETYTATEAPKGEFGVYLVSNGT 331
Query: 647 NKPYRIKIRSPGFAHLQSLSEM 668
N+PYR KI++PGF HLQ+L M
Sbjct: 332 NRPYRCKIKAPGFNHLQALDFM 353
>gi|221459469|ref|NP_651392.2| CG11913 [Drosophila melanogaster]
gi|220903213|gb|AAF56465.2| CG11913 [Drosophila melanogaster]
Length = 523
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 227/412 (55%), Positives = 284/412 (68%), Gaps = 33/412 (8%)
Query: 285 LNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDY 344
+NFGP HPAAHGVLR+ILEL+ E V ADPHIGLLHR TEKL E +TY Q+LPY DRLDY
Sbjct: 142 INFGPAHPAAHGVLRMILELDNETVLNADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 201
Query: 345 VSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLL 404
VS M NE AY +A+EKLLN+++P RA+YIR MF EI RL NH M IGS LD GA+ L
Sbjct: 202 VSCMANELAYCLAVEKLLNVEVPRRAKYIRTMFSEIMRLTNHTMAIGSSVLDCGAITPLF 261
Query: 405 YAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENR 464
+ F ERE L + E SGAR+HAAY RPGGV D+P
Sbjct: 262 WLFEEREKLYEFSERASGARLHAAYIRPGGVASDIP------------------------ 297
Query: 465 QGSLLDFIED---FTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPML 521
L F+ D F N+F + +DE E ++TDNRIW+ R +GIGV+S AL+ G TGP+L
Sbjct: 298 ----LGFLHDLYQFINQFNERLDEVEDVVTDNRIWRMRNIGIGVISAHDALNYGCTGPVL 353
Query: 522 RGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRS 581
R +GVKWDLRK+QPY+ Y+ ++FD+ +G NGD YDRYLVR+ EMR+S IIKQCI +
Sbjct: 354 RATGVKWDLRKQQPYDAYDEMDFDVVVGSNGDCYDRYLVRMREMRESVNIIKQCIDAM-- 411
Query: 582 NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYL 641
G + ++ KI P R MK MEDLIHHFK F++GF VP G+ Y VE PKGEFG +L
Sbjct: 412 PPGEIKVDDLKICPPQRSKMKEGMEDLIHHFKHFSQGFRVPPGQTYCAVESPKGEFGAFL 471
Query: 642 VSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+SDG+++PYR KIR +AHL +++M H+++DVV IIG+ DIVFGEIDR
Sbjct: 472 ISDGSSRPYRCKIRPASYAHLALMAKMAPAHLLADVVAIIGSLDIVFGEIDR 523
>gi|166895611|ref|YP_001661405.1| NADH dehydrogenase subunit 7 [Cycas taitungensis]
gi|166706943|dbj|BAF98407.1| NADH dehydrogenase subunit 7 [Cycas taitungensis]
Length = 394
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 222/414 (53%), Positives = 286/414 (69%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
I+++ N GPQHPAAHGV R + E+ GEVV +A+PHIG LHR TEK E +TYLQ+ PY
Sbjct: 8 IRNFTSNSGPQHPAAHGVSRSVSEMNGEVVERAEPHIGSLHRGTEKSIEYKTYLQASPYS 67
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DR DYVSMM EHA+ A+EKLLN ++P+RAQYIRV+F EITR+ NH + + +H++D+GA
Sbjct: 68 DRSDYVSMMAQEHAHSSAVEKLLNREVPLRAQYIRVLFREITRISNHSLALTTHAMDVGA 127
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ L+AF ERE L+ +E V GARMHA++ RPGGV +DLP
Sbjct: 128 LTPSLWAFEEREKSLEFHERVPGARMHASFIRPGGVAQDLPL------------------ 169
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
L I FT +F IDE E + T NRIWKQRLV IG V+ ++A GF+G
Sbjct: 170 -------GLCRDIYSFTQQFASRIDESEEMSTGNRIWKQRLVDIGTVTAQQAKDWGFSGV 222
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSGV WDLRK PY+ ++ + D+P+G GD YDRY +RIEEMRQS +II QC +
Sbjct: 223 MLRGSGVCWDLRKAAPYDAHDQSDSDVPVGTRGDCYDRYCIRIEEMRQSLRIIVQCPDRM 282
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
S G + +++ K+ P+R M+ +ME LIHHF+L+TEGF VP Y+ VE PKGEFG+
Sbjct: 283 PS--GMIKADDRKLCPPSRCQMRLSMESLIHHFELYTEGFSVPASSTYTAVEAPKGEFGV 340
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+LVS+G+N+PYR KIR+PGFAH Q L M HM++DVVTIIGTQDIV GE+DR
Sbjct: 341 FLVSNGSNRPYRRKIRAPGFAHSQGLDSMSKHHMLADVVTIIGTQDIVSGEVDR 394
>gi|195354912|ref|XP_002043940.1| GM17844 [Drosophila sechellia]
gi|194129178|gb|EDW51221.1| GM17844 [Drosophila sechellia]
Length = 502
Score = 453 bits (1166), Expect = e-124, Method: Compositional matrix adjust.
Identities = 227/412 (55%), Positives = 283/412 (68%), Gaps = 33/412 (8%)
Query: 285 LNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDY 344
+NFGP HPAAHGVLR+ILEL+ E V ADPHIGLLHR TEKL E +TY Q+LPY DRLDY
Sbjct: 121 INFGPAHPAAHGVLRMILELDNETVLNADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 180
Query: 345 VSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLL 404
VS M NE AY +A+EKLLN+++P RA+YIR MF EI RL NH M IGS LD GA+ L
Sbjct: 181 VSCMANELAYCLAVEKLLNVEVPRRAKYIRTMFSEIMRLTNHTMAIGSSVLDCGAITPLF 240
Query: 405 YAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENR 464
+ F ERE L + E SGAR+HAAY RPGGV D+P
Sbjct: 241 WLFEEREKLYEFSERASGARLHAAYIRPGGVASDIP------------------------ 276
Query: 465 QGSLLDFIED---FTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPML 521
L F+ D F N F + +DE E ++TDNRIW+ R +GIGV+S AL+ G TGP+L
Sbjct: 277 ----LGFLHDLYQFINLFNERLDEVEDVVTDNRIWRMRNIGIGVISAHDALNYGCTGPVL 332
Query: 522 RGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRS 581
R +GVKWDLRK+QPY+ Y+ ++FD+ +G NGD YDRYLVR+ EMR+S IIKQCI +
Sbjct: 333 RATGVKWDLRKQQPYDAYDEIDFDVVVGSNGDCYDRYLVRMREMRESVNIIKQCIDSM-- 390
Query: 582 NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYL 641
G + ++ KI P R MK MEDLIHHFK F++GF VP G+ Y VE PKGEFG +L
Sbjct: 391 PPGEIKVDDLKICPPQRSKMKEGMEDLIHHFKHFSQGFRVPPGQTYCAVESPKGEFGAFL 450
Query: 642 VSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+SDG+++PYR KIR +AHL +++M H+++DVV IIG+ DIVFGEIDR
Sbjct: 451 ISDGSSRPYRCKIRPASYAHLALMAKMAPAHLLADVVAIIGSLDIVFGEIDR 502
>gi|312076864|ref|XP_003141051.1| hypothetical protein LOAG_05466 [Loa loa]
gi|307763786|gb|EFO23020.1| NADH dehydrogenase [Loa loa]
Length = 475
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 226/411 (54%), Positives = 282/411 (68%), Gaps = 27/411 (6%)
Query: 283 YKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRL 342
Y LNFGPQHPAAHGVLRLILEL+ EVV KA PH+GLLHRATEKL E +TY Q++PY DRL
Sbjct: 92 YLLNFGPQHPAAHGVLRLILELDNEVVMKATPHVGLLHRATEKLIEYKTYTQAVPYFDRL 151
Query: 343 DYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGV 402
DY++M+ NE + +A+EKLL I+IP RA++IR +F E+ RL NH I +H+LDIGAM
Sbjct: 152 DYITMLTNEQGFALAVEKLLGIEIPPRAKWIRTLFAELNRLANHAFSIVTHALDIGAMTP 211
Query: 403 LLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNE 462
L + F ERE L + E VSGARMH Y RPGGV DLP
Sbjct: 212 LFWMFEEREKLFEFNERVSGARMHVNYIRPGGVGWDLPL--------------------- 250
Query: 463 NRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLR 522
LLD I D+ +FP+ ID E +LTDNR+WK R IG++S A S+GF+G MLR
Sbjct: 251 ----GLLDDIYDWAIQFPQRIDTMEDMLTDNRLWKSRTRDIGLISAADAQSLGFSGVMLR 306
Query: 523 GSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSN 582
GSGVK+D+RK QPYE Y+ + FDIP+G GD YDRYL R+EEMRQS KI+ C+ + S
Sbjct: 307 GSGVKYDVRKAQPYEAYDQIEFDIPVGTKGDCYDRYLCRLEEMRQSLKIVLDCLNKMPS- 365
Query: 583 KGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLV 642
G + +++KI P R MK++ME LIHHFK F+EG+ VP G Y +E P GE+G Y+V
Sbjct: 366 -GEIKVDDHKIVPPKRAEMKNSMESLIHHFKFFSEGYQVPSGSCYVPIEAPNGEYGTYVV 424
Query: 643 SDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+DG +KPYR IR PGFAHL L ++ +ISDVV +IGT DIVFGE+DR
Sbjct: 425 ADGTSKPYRCFIRGPGFAHLAGLHDLTYMSLISDVVAVIGTMDIVFGEVDR 475
>gi|195445455|ref|XP_002070332.1| GK11092 [Drosophila willistoni]
gi|194166417|gb|EDW81318.1| GK11092 [Drosophila willistoni]
Length = 510
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 225/426 (52%), Positives = 290/426 (68%), Gaps = 35/426 (8%)
Query: 273 KDFPVIE--IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQR 330
K P+++ +S +NFGP HPAAHGVLR+ILEL+ E + ADPHIGLLHR TEKL E +
Sbjct: 115 KKAPLVDRTFRSKFINFGPAHPAAHGVLRMILELDNETILSADPHIGLLHRGTEKLIEHK 174
Query: 331 TYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWI 390
TYLQ+LPY DRLDYVS M NE AY +A+EKLLNI++P RA+YIR +F E+ RL NH M +
Sbjct: 175 TYLQALPYFDRLDYVSCMANEQAYSLAVEKLLNIEVPRRAKYIRTLFAELMRLTNHTMAV 234
Query: 391 GSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSI 450
S LD GA+ L + F ERE + + E SGARMHA Y RPGGV D+P
Sbjct: 235 SSAILDCGAITPLFWLFEEREKMYEFSERASGARMHACYIRPGGVASDIP---------- 284
Query: 451 IRNNKATKILNENRQGSLLDFIED---FTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVS 507
L F ED F +F +DE E ++TDNRIW+ R +GIG ++
Sbjct: 285 ------------------LGFSEDLYAFITQFKDRLDEVEDVITDNRIWRMRNIGIGQIT 326
Query: 508 PERALSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQ 567
AL+ G +GP+LRG+G+KWDLRK+QPY+ Y L FD+ +G+NGD YDRYLVR+ EMR+
Sbjct: 327 AYEALNYGCSGPVLRGTGIKWDLRKQQPYDAYPELEFDVAVGRNGDCYDRYLVRMYEMRE 386
Query: 568 SNKIIKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIY 627
S +II+QC++ + G + ++ KIT P R NMK MEDLIHHFK F++GF VP G+ Y
Sbjct: 387 SLRIIQQCLE--KMPLGEIKVDDRKITPPQRRNMKLGMEDLIHHFKYFSQGFAVPPGQTY 444
Query: 628 SCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIV 687
+ VE PKGEFG+YLVSDG ++PYR KIR +AHL + ++ HM++DV IIG+ DIV
Sbjct: 445 TAVESPKGEFGVYLVSDGTSRPYRCKIRPASYAHLAMMRKIAPTHMLADVCAIIGSLDIV 504
Query: 688 FGEIDR 693
FGEIDR
Sbjct: 505 FGEIDR 510
>gi|91078082|ref|XP_972109.1| PREDICTED: similar to NADH dehydrogenase iron-sulfur protein 2,
mitochondrial [Tribolium castaneum]
gi|270002319|gb|EEZ98766.1| hypothetical protein TcasGA2_TC001330 [Tribolium castaneum]
Length = 455
Score = 450 bits (1158), Expect = e-123, Method: Compositional matrix adjust.
Identities = 227/426 (53%), Positives = 294/426 (69%), Gaps = 29/426 (6%)
Query: 270 PFRKDFPVIEIKSYKL--NFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLA 327
PF P E K L NFGP HPAAHG LR+I EL+GE+VR DPHIGLLHR TEKL
Sbjct: 57 PFNAKCPPPERKVTNLVVNFGPCHPAAHGCLRMITELDGEMVRHLDPHIGLLHRGTEKLI 116
Query: 328 EQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHL 387
E +TY Q++PY DRLDYVS MC+EHA+ +A EKLLNI IP RA++IRV+FDEITRL+NH+
Sbjct: 117 EYKTYNQAIPYFDRLDYVSPMCSEHAFCLAAEKLLNIDIPRRAKFIRVLFDEITRLMNHM 176
Query: 388 MWIGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYK 447
LD+G + L + F ERE L++ YE V GAR+HA YYR GGV +DLP
Sbjct: 177 AATSFLILDVGGITPLFWLFEEREKLMEVYERVCGARLHANYYRIGGVNQDLPI------ 230
Query: 448 SSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVS 507
LLD I + ++F + IDE E L+TDNR++ R IG V+
Sbjct: 231 -------------------GLLDDIHNLVSKFGERIDEVEDLVTDNRLFIARTKNIGRVA 271
Query: 508 PERALSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQ 567
+ AL+MGF+G MLR SG+KWDLRK +PYEIY+ L FD+P+G NGD YDR+ VR+EEMRQ
Sbjct: 272 AQDALNMGFSGCMLRASGIKWDLRKTRPYEIYSELEFDVPVGSNGDIYDRFRVRLEEMRQ 331
Query: 568 SNKIIKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIY 627
S +I++Q I + G V +++KI+ P R MKS+ME +IHHFK+F++GF VP G Y
Sbjct: 332 SVRIVEQVINQM--PPGEVKLDDHKISPPNRREMKSSMEAIIHHFKIFSQGFQVPPGSTY 389
Query: 628 SCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIV 687
+ +EHPKGEFG+YLVSDG++ PYR KIR+P F HL +++ + H ++DVV I+ T DIV
Sbjct: 390 TSIEHPKGEFGVYLVSDGSSVPYRCKIRTPSFIHLSAMNHIGKNHYLADVVAILATLDIV 449
Query: 688 FGEIDR 693
FG++DR
Sbjct: 450 FGDVDR 455
>gi|164655213|ref|XP_001728737.1| hypothetical protein MGL_4072 [Malassezia globosa CBS 7966]
gi|159102621|gb|EDP41523.1| hypothetical protein MGL_4072 [Malassezia globosa CBS 7966]
Length = 462
Score = 450 bits (1158), Expect = e-123, Method: Compositional matrix adjust.
Identities = 215/414 (51%), Positives = 284/414 (68%), Gaps = 27/414 (6%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
++ + +NFGPQHPAAHGVLRLI+EL GE + + DPH+GLLHR TEKL E +TY Q+LPY
Sbjct: 76 LRHFTVNFGPQHPAAHGVLRLIMELNGEEILRVDPHVGLLHRGTEKLIEYKTYTQALPYF 135
Query: 340 DRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGA 399
DRLDY SMM NE + A+EKLLNI++P RA++IR ++ E+TR+ NH M + SH +D+G
Sbjct: 136 DRLDYSSMMTNELCFARAVEKLLNIEVPERAKWIRTLYGELTRISNHCMAVLSHIMDVGG 195
Query: 400 MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKI 459
+ ++ ERE +++ YE VSGARMHAAY RPGGV DLP
Sbjct: 196 LTPFVWGLEEREKIMEFYERVSGARMHAAYVRPGGVTYDLPP------------------ 237
Query: 460 LNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
LLD I + +F +DE E L+T NR+W++R +GIG VS + AL+ GF+G
Sbjct: 238 -------GLLDDIYHWATQFAGRVDEIEELVTGNRVWRERTIGIGKVSAKDALNYGFSGV 290
Query: 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL 579
MLRGSG+ WD+RK PY+ Y+ + FD+P+GKNGD +DRYL RIEE RQS +II QC+ +
Sbjct: 291 MLRGSGIPWDIRKVAPYDAYDQVEFDVPVGKNGDCFDRYLCRIEEFRQSLRIIHQCLNKM 350
Query: 580 RSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGI 639
+ G + +++KI P+R MK +ME LIHHFKLF+EGF VP GE YS +E PKGE G+
Sbjct: 351 PA--GQIKVDDHKIAPPSRSMMKESMESLIHHFKLFSEGFTVPPGETYSAIEAPKGEMGV 408
Query: 640 YLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
YLVS+G N+PYR I +PGF HL + H + D+V IIGT D+VFGE+DR
Sbjct: 409 YLVSNGTNRPYRCSISAPGFRHLAGADFVARHHYLPDMVAIIGTMDLVFGEVDR 462
>gi|403417087|emb|CCM03787.1| predicted protein [Fibroporia radiculosa]
Length = 500
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 229/472 (48%), Positives = 305/472 (64%), Gaps = 58/472 (12%)
Query: 250 FFDGH--DDLRRLLTDYGFVGHPFRKDFPVIEIKSYKLNFGPQHPAAHGVLRLILELEGE 307
FD H +DL+ + R+D +++ + +NFGPQHPAAHGVLRLILEL GE
Sbjct: 59 IFDTHTVEDLQGIHASEILAETGTRRD---AQMRHFTVNFGPQHPAAHGVLRLILELNGE 115
Query: 308 VVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIP 367
V +ADPH+GLLHR TEKL E +TY Q+LPY DRLDYVSMM NE Y +A+EKLLNI++P
Sbjct: 116 EVLRADPHVGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMTNELCYSLAVEKLLNIEVP 175
Query: 368 IRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHA 427
RA++IR +F EITR+LNHLM + +H++D+GA+ L+ F ERE L++ YE VSGAR+HA
Sbjct: 176 ERAKWIRTLFGEITRILNHLMAVLTHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHA 235
Query: 428 AYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYE 487
AY RPGGV DLP LL+ I + ++F +DE E
Sbjct: 236 AYVRPGGVAFDLPH-------------------------GLLEDIYQWASQFSSRVDEIE 270
Query: 488 TLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIP 547
++T NRIWK+R +GIGVV+ ++AL F+G MLRGSGV WD+RK PY+ Y+ + FD+P
Sbjct: 271 EVVTGNRIWKERTIGIGVVTAKQALDYSFSGVMLRGSGVPWDIRKIAPYDKYDEVEFDVP 330
Query: 548 IGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKGPVISNNNKITSPARINMKSNMED 607
+GKNGD YDRYL R++E R+S +I+ QC+ + + G V ++ K+ P R +MK +ME
Sbjct: 331 VGKNGDCYDRYLCRVQEFRESLRIVDQCLNKMPT--GAVKVDDYKLVPPPRASMKESMES 388
Query: 608 LIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSE 667
LIHHFK+F+EG+ VP GE YS +E PKGE G+YL+SDG N+PYR KIR+PGFAHL
Sbjct: 389 LIHHFKIFSEGYSVPPGETYSAIEAPKGEMGVYLISDGTNRPYRCKIRAPGFAHLAGADM 448
Query: 668 MISGHMIS-------DVVTIIGTQ-------------------DIVFGEIDR 693
M+ IS +T + T D+VFGE+DR
Sbjct: 449 MMRHVRISLSPITVMQYLTYLSTNSIILPTSLRSSELWSVPMTDLVFGEVDR 500
>gi|371907970|emb|CAP18138.1| NADH dehydrogenase subunit 7, partial (mitochondrion) [Xanthonema
sp. 907]
Length = 353
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 217/379 (57%), Positives = 278/379 (73%), Gaps = 29/379 (7%)
Query: 287 FGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVS 346
FGPQHPAAHGVLRL+L+L+GE+V +ADPHIGLLHR TEKL E +TYLQ+LPY DRLDYVS
Sbjct: 1 FGPQHPAAHGVLRLVLDLKGEIVERADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVS 60
Query: 347 MMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLLYA 406
++ EH Y +A+EKLLN K+PIRA YIRV+F EITR+LNHL+ +G H++D+GA+ L+A
Sbjct: 61 IIGQEHTYCLAVEKLLNCKVPIRAIYIRVIFAEITRILNHLLAVGCHAIDVGAITPFLWA 120
Query: 407 FREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENRQG 466
F ERE L++ YE VSGARMHAAY+RPGG+ DLP
Sbjct: 121 FEEREKLIEFYERVSGARMHAAYFRPGGLALDLPY------------------------- 155
Query: 467 SLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGSGV 526
L+D I F +F +DE E +LT NRIWKQRLV IGVV AL++GF+G +LRGSG+
Sbjct: 156 GLIDDIYVFIIQFSTRLDEIEEILTSNRIWKQRLVDIGVVKASDALALGFSGVILRGSGI 215
Query: 527 KWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKGPV 586
WDLR QPY++Y+ + F+IP+G GD YDRYL+R+EE+RQS II QC+ + + G V
Sbjct: 216 NWDLRISQPYDVYSSMKFEIPVGTKGDCYDRYLLRLEEIRQSLSIIHQCLNNIPN--GSV 273
Query: 587 ISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGA 646
N I+ P+R N+KS++E LIHHFKL+TEG VP GE Y+ E PKGEFG+YL+S+G+
Sbjct: 274 RDEN--ISPPSRTNLKSSIESLIHHFKLYTEGLVVPSGETYTATEAPKGEFGVYLISNGS 331
Query: 647 NKPYRIKIRSPGFAHLQSL 665
N+PYR KI++PGF HLQ+L
Sbjct: 332 NRPYRCKIKAPGFNHLQAL 350
>gi|91203917|emb|CAJ71570.1| strongly similar to to proton-translocating NADH dehydrogenase I 49
kDa subunit (NuoD) [Candidatus Kuenenia stuttgartiensis]
Length = 396
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 214/409 (52%), Positives = 280/409 (68%), Gaps = 27/409 (6%)
Query: 285 LNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDY 344
+N GPQHP+ HGVLRLILE++GE + KA P IG LHR EKLAE +TY Q +P DRLDY
Sbjct: 15 INMGPQHPSTHGVLRLILEMDGETITKAAPDIGFLHRGVEKLAEYKTYHQFIPLTDRLDY 74
Query: 345 VSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLL 404
V+ N AY +A+EKL+ ++IP RAQ+IRVM E+TR+ +HL+W+ +H+LD+GAM V
Sbjct: 75 VAPFSNNLAYALAVEKLIGVEIPERAQHIRVMLCELTRISSHLLWLATHALDLGAMTVFF 134
Query: 405 YAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENR 464
Y FRERE L D +E VSG+RM+ +Y R GGV DLP
Sbjct: 135 YCFRERETLYDIFEMVSGSRMNLSYIRIGGVAHDLP------------------------ 170
Query: 465 QGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGS 524
G L +E F N FP + EYE LL DN IWK+R +G+G +SPE A+ G +GP LRGS
Sbjct: 171 -GGFLKSVEKFVNEFPSKLKEYEILLKDNPIWKKRTIGVGYISPEEAIDYGLSGPSLRGS 229
Query: 525 GVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKG 584
GV WD+RK +PY Y+ +F++P+G +GD YDRY VRIEEM QSN I+KQ + L KG
Sbjct: 230 GVDWDVRKAEPYSSYDKYDFNVPLGVHGDVYDRYRVRIEEMIQSNNIVKQALDIL--PKG 287
Query: 585 PVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSD 644
I++ + PA+ +++NME +IHHFKL T+G P GE+YSCVE PKGE G Y+VSD
Sbjct: 288 DHIAHAPAVALPAKEAVETNMEAMIHHFKLITDGICPPKGEVYSCVEAPKGELGFYIVSD 347
Query: 645 GANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+N+PYR+KIR P F +L++L +M+ G M+ DVV +IG+ DIV GEIDR
Sbjct: 348 GSNRPYRLKIRPPSFVNLEALPKMVEGKMLPDVVAVIGSLDIVLGEIDR 396
>gi|170588619|ref|XP_001899071.1| Probable NADH-ubiquinone oxidoreductase 49 kDa subunit,
mitochondrialprecursor [Brugia malayi]
gi|158593284|gb|EDP31879.1| Probable NADH-ubiquinone oxidoreductase 49 kDa subunit,
mitochondrialprecursor , putative [Brugia malayi]
Length = 478
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 223/420 (53%), Positives = 285/420 (67%), Gaps = 27/420 (6%)
Query: 274 DFPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYL 333
DF + Y LNFGPQHPAAHGVLRLILEL+ E+V KA PHIGLLHRATEKL E +TY
Sbjct: 86 DFHEKPLHYYLLNFGPQHPAAHGVLRLILELDNEMVMKAVPHIGLLHRATEKLIEYKTYT 145
Query: 334 QSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSH 393
Q+LPY DRLDY++M+ NE + +A+EKLL I+IP RA++IR +F E+ RL NH I +H
Sbjct: 146 QALPYFDRLDYITMLTNEQGFALAVEKLLGIEIPPRAKWIRTLFAELNRLANHAFSIVTH 205
Query: 394 SLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRN 453
+LDIGAM L + F ERE L + E VSGARMH Y RPGGV DLP
Sbjct: 206 ALDIGAMTPLFWMFEEREKLFEFNERVSGARMHVNYIRPGGVAWDLPL------------ 253
Query: 454 NKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALS 513
LLD I D+T +FP+ ID E +LT+NR+W+ R IG++S A S
Sbjct: 254 -------------GLLDDIYDWTIQFPQRIDAMEDMLTENRLWQSRTRDIGLISATDAQS 300
Query: 514 MGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIK 573
+GF+G MLR SGVK+D+RK QPYE+Y+ + FD+P+G GD YDRYL R+EEMRQS +I+
Sbjct: 301 LGFSGVMLRASGVKYDVRKAQPYEVYDQIEFDVPVGTRGDCYDRYLCRLEEMRQSLRIVL 360
Query: 574 QCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHP 633
C+ + G + +++K+ P R MK++ME LIHHFK F+EG+ VP G Y +E P
Sbjct: 361 DCLN--KMPPGEIKVDDHKVVPPKREEMKNSMESLIHHFKFFSEGYQVPPGSCYVPIEAP 418
Query: 634 KGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
GE+G Y+V+DG +KPYR IR PGFAHL L ++ +ISDVV +IGT DIVFGE+DR
Sbjct: 419 NGEYGTYVVADGTSKPYRCFIRGPGFAHLAGLHDLTHMSLISDVVAVIGTMDIVFGEVDR 478
>gi|260434177|ref|ZP_05788148.1| NADH dehydrogenase (quinone), d subunit [Silicibacter
lacuscaerulensis ITI-1157]
gi|260418005|gb|EEX11264.1| NADH dehydrogenase (quinone), d subunit [Silicibacter
lacuscaerulensis ITI-1157]
Length = 367
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 216/393 (54%), Positives = 280/393 (71%), Gaps = 26/393 (6%)
Query: 301 ILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEK 360
+LEL+GE+V + DPHIGLLHR TEKL E RTYLQ+LPY DRLDYV+ M EHA+ +AIEK
Sbjct: 1 MLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVAPMNQEHAWCLAIEK 60
Query: 361 LLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLLYAFREREDLLDCYEAV 420
L +++P RA IRV++ EI R+LNHL+ + + ++D+GA+ L+ F ERE L+ YE
Sbjct: 61 LTGVEVPRRASLIRVLYSEIGRILNHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERA 120
Query: 421 SGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENRQGSLLDFIEDFTNRFP 480
GAR+HAAY+RPGGV++DLP LLD IE +++ FP
Sbjct: 121 CGARLHAAYFRPGGVHQDLPP-------------------------ELLDDIEAWSHSFP 155
Query: 481 KNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGSGVKWDLRKKQPYEIYN 540
+D+ + LLT+NRI+KQR IGVV+ E GF+G M+RGSG+ WDLR+ QPYE Y+
Sbjct: 156 AVLDDIDGLLTENRIFKQRNCDIGVVTEEDIQQFGFSGVMVRGSGLAWDLRRAQPYECYD 215
Query: 541 LLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKGPVISNNNKITSPARIN 600
F IP+GKNGD YDRYLVR+EEMRQS II+Q I LR G V++ KIT P R +
Sbjct: 216 EFEFQIPVGKNGDCYDRYLVRMEEMRQSVSIIRQAIAKLRDCPGDVLA-RGKITPPKRSD 274
Query: 601 MKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFA 660
MK++ME LIHHFKL+TEGF+VP GE+Y+ VE PKGEFG+YLV+DG NKPYR K+R+PG+
Sbjct: 275 MKTSMESLIHHFKLYTEGFHVPAGEVYAAVEAPKGEFGVYLVADGTNKPYRAKLRAPGYL 334
Query: 661 HLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
HLQ++ + GH ++DV IIGT D+VFGEIDR
Sbjct: 335 HLQAMDHVAKGHQLADVAAIIGTMDVVFGEIDR 367
>gi|194743140|ref|XP_001954058.1| GF16933 [Drosophila ananassae]
gi|190627095|gb|EDV42619.1| GF16933 [Drosophila ananassae]
Length = 519
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 222/423 (52%), Positives = 288/423 (68%), Gaps = 29/423 (6%)
Query: 273 KDFPVIE--IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQR 330
K FP ++ ++ +NFGP HPAAHGVLR+ILEL+ E V ADPHIGLLHR TEKL E +
Sbjct: 124 KQFPPVDRTFRTKFINFGPAHPAAHGVLRMILELDNETVLAADPHIGLLHRGTEKLIEYK 183
Query: 331 TYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWI 390
TY+Q+LPY DRLDYVS M NE AY +A+EKLLNI++P RA+YIR +F EI RL NH M +
Sbjct: 184 TYVQALPYFDRLDYVSCMANEQAYALAVEKLLNIEVPRRARYIRTLFAEIMRLTNHTMAV 243
Query: 391 GSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSI 450
S LD G + L + F ERE L + E SGAR+HAAY+RPGGV D+P
Sbjct: 244 SSSILDCGGITPLFWLFEEREKLYEFSERASGARLHAAYFRPGGVASDIP---------- 293
Query: 451 IRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPER 510
L FI+ F++R +DE E L+TDNRIW+ R +GIG +S
Sbjct: 294 -----------LGFSDDLYAFIKQFSDR----LDEVEDLVTDNRIWRMRNIGIGQISAHD 338
Query: 511 ALSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNK 570
AL+ G TGP+LR G+KWDLRK+QPY+ Y+ ++F++ +G NGD YDRYLVR+ EMR+S
Sbjct: 339 ALNWGCTGPVLRACGIKWDLRKQQPYDAYDEMDFEVMVGSNGDCYDRYLVRMREMRESLN 398
Query: 571 IIKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCV 630
II QC+ + +G + ++ KI P R +MK MEDLIHHFK F++G VP G+ Y+ V
Sbjct: 399 IIYQCLD--KMPEGEIKVDDRKICPPQRRDMKVGMEDLIHHFKHFSQGIVVPPGQTYTAV 456
Query: 631 EHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGE 690
E PKGEFG+YL+SDG ++PYR KIR +AHL +++M H ++DVV IIG+ DIVFGE
Sbjct: 457 ESPKGEFGVYLISDGTSRPYRCKIRPASYAHLAVMAKMAPSHFLADVVAIIGSLDIVFGE 516
Query: 691 IDR 693
IDR
Sbjct: 517 IDR 519
>gi|299756722|ref|XP_001829546.2| NADH-ubiquinone oxidoreductase [Coprinopsis cinerea okayama7#130]
gi|298411803|gb|EAU92506.2| NADH-ubiquinone oxidoreductase [Coprinopsis cinerea okayama7#130]
Length = 441
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 212/384 (55%), Positives = 274/384 (71%), Gaps = 27/384 (7%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++ + +NFGPQHPAAHGVLR+ILEL GE + +ADPHIGLLHR TEKL E + Y Q+LPY
Sbjct: 69 KMRHFTVNFGPQHPAAHGVLRMILELNGEEILRADPHIGLLHRGTEKLIEYKNYTQALPY 128
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE +Y +A+EKLLN+++P RAQ+IR +F EITR+LNHLM + +H +D+G
Sbjct: 129 FDRLDYVSMMTNELSYSLAVEKLLNVQVPERAQWIRTLFGEITRILNHLMAVLTHVMDVG 188
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+ L+ F ERE L++ YE VSGAR+HAAY RPGGV DLP
Sbjct: 189 GLTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVAFDLPH----------------- 231
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LL+ I + +F IDE E ++T NRIWK+R +GIGVV+ ++AL F+G
Sbjct: 232 --------GLLEDIFKWATQFGSRIDEIEEVVTGNRIWKERTIGIGVVTAQQALDYSFSG 283
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV WD+RK PY+ Y + FDIP+GKNGD YDRYL R++EMR+S +II QC+
Sbjct: 284 VMLRGSGVPWDIRKVAPYDKYAEVEFDIPVGKNGDCYDRYLCRVQEMRESLRIISQCLNK 343
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + G V +++K+T P R MK +ME LIHHFKLF+EG+ VP GE Y+ +E PKGE G
Sbjct: 344 MPT--GVVKVDDHKLTPPPRAMMKESMESLIHHFKLFSEGYSVPPGETYTAIEAPKGEMG 401
Query: 639 IYLVSDGANKPYRIKIRSPGFAHL 662
+YLVSDG N+PYR IR+PGFAHL
Sbjct: 402 VYLVSDGTNRPYRCSIRAPGFAHL 425
>gi|218509668|ref|ZP_03507546.1| NADH dehydrogenase subunit D [Rhizobium etli Brasil 5]
Length = 379
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 218/396 (55%), Positives = 282/396 (71%), Gaps = 27/396 (6%)
Query: 272 RKDFPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRT 331
R + + + LN GPQHP+ HGVLRL+LEL+GE V + DPHIGLLHR TEKL E +T
Sbjct: 9 RPEGEALNTREVLLNLGPQHPSTHGVLRLVLELDGEFVERVDPHIGLLHRGTEKLIETKT 68
Query: 332 YLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIG 391
YLQ++PY DRLDYV+ M EHAY +A+E+LL I+IPIR Q IRV++ EI R+L+HL+ +
Sbjct: 69 YLQAVPYFDRLDYVAPMNQEHAYALAVERLLGIEIPIRGQLIRVLYSEIGRILSHLLNVT 128
Query: 392 SHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSII 451
+ ++D+GA+ L+ F ERE L+ YE SG+RMHAAY RPGGV++DLPE
Sbjct: 129 TQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYVRPGGVHQDLPE---------- 178
Query: 452 RNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERA 511
L+ I D+ + F K +D+ + LLT NRI+KQR V IGVVS E
Sbjct: 179 ---------------KLVQDIGDWCDPFLKALDDIDNLLTGNRIFKQRNVDIGVVSLEDC 223
Query: 512 LSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKI 571
+ GF+G M+RGSG WDLR+ QPYE Y+ L FDIPIGKNGD+YDRYL+R+ EMRQS +I
Sbjct: 224 WAWGFSGVMVRGSGAAWDLRRAQPYECYSDLEFDIPIGKNGDNYDRYLIRMIEMRQSVRI 283
Query: 572 IKQCIKWLRSN--KGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSC 629
+KQC+ L S+ GP S + K+ P R MK +ME LIHHFKL+TEG++VP GE+Y+
Sbjct: 284 MKQCVNRLLSDAKTGPFSSIDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAA 343
Query: 630 VEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSL 665
VE PKGEFG+YLVSDG+NKPYR KIR+PG+AHLQ++
Sbjct: 344 VEAPKGEFGVYLVSDGSNKPYRCKIRAPGYAHLQAM 379
>gi|385301926|gb|EIF46084.1| nadh-ubiquinone oxidoreductase 49 kda mitochondrial precursor
[Dekkera bruxellensis AWRI1499]
Length = 525
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 215/384 (55%), Positives = 275/384 (71%), Gaps = 27/384 (7%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+ + LNFGPQHPAAHGVLR+ILEL GE + +ADPH+GLLHR TEKL E RTY+Q+LPY
Sbjct: 122 KIRHFTLNFGPQHPAAHGVLRMILELHGEEIVRADPHVGLLHRGTEKLIESRTYMQALPY 181
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDY SMM NE + +A+EKLLNI++PIR +YIR +F EITR+LNHLM I SH++D+G
Sbjct: 182 FDRLDYCSMMTNEEVFSLAVEKLLNIEVPIRGKYIRTLFGEITRILNHLMSILSHAMDVG 241
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGARMH+AY RPGGV +DLP
Sbjct: 242 ALTPFLWGFEEREKLMEFYERVSGARMHSAYVRPGGVAKDLPI----------------- 284
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LLD I + +F +DE E LLTDNRIWKQR V IGV+S E AL+ G +G
Sbjct: 285 --------GLLDDIYMWATQFGDRLDETEELLTDNRIWKQRTVDIGVLSAEDALAYGLSG 336
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ +D+RK QPY+ Y+ +NFDI +G GD YDRYL+R+ E R+S +II+QCI
Sbjct: 337 VMLRGSGIPYDIRKAQPYDAYDRMNFDIAVGTKGDCYDRYLIRMVEFRESLRIIEQCINE 396
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + GPV + KI+ P R MK+NME LIHHF LFT+G+ VP GE Y+ +E PKGE G
Sbjct: 397 MPA--GPVKVEDFKISPPPRELMKNNMEALIHHFLLFTKGYQVPPGETYTAIEAPKGEMG 454
Query: 639 IYLVSDGANKPYRIKIRSPGFAHL 662
+Y++SDG+ +PY+ KIR+PGF L
Sbjct: 455 VYVISDGSERPYKCKIRTPGFRQL 478
>gi|63100877|gb|AAH95651.1| Zgc:112036 [Danio rerio]
gi|182890580|gb|AAI64772.1| Zgc:112036 protein [Danio rerio]
Length = 370
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 214/378 (56%), Positives = 269/378 (71%), Gaps = 27/378 (7%)
Query: 316 IGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRV 375
+ LHR TEKL E +TYLQ+LPY DRLDYVS MCNE AY +A+EKLLNI+ P RAQ+IRV
Sbjct: 20 LSTLHRGTEKLIEYKTYLQALPYFDRLDYVSTMCNEQAYSLAVEKLLNIQAPPRAQWIRV 79
Query: 376 MFDEITRLLNHLMWIGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGV 435
+F E+TR++NH+M I +H+LDIGAM + F ERE L + YE VSGARMHAAY RPGGV
Sbjct: 80 LFGEMTRIMNHIMGITTHALDIGAMTPFFWMFEEREKLFEFYERVSGARMHAAYVRPGGV 139
Query: 436 YRDLPEIMPQYKSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRI 495
++D+P L+D I ++ F IDE E +LT+NRI
Sbjct: 140 HQDMPL-------------------------GLMDDIYEWCKNFSIRIDEVEEMLTNNRI 174
Query: 496 WKQRLVGIGVVSPERALSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSY 555
WK R VGIGV+ E AL+ GF+G MLRGSG+KWDLRK QPY+ Y+ + FD+ IG NGD Y
Sbjct: 175 WKNRTVGIGVIGAEEALNYGFSGVMLRGSGIKWDLRKSQPYDKYDEVEFDMAIGTNGDCY 234
Query: 556 DRYLVRIEEMRQSNKIIKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLF 615
DRYL R+EEMRQS +I+ QC+ + G + ++ KI P R MK++ME LIHHFKL+
Sbjct: 235 DRYLCRVEEMRQSLRIMHQCLN--KMPPGEIKVDDAKIAPPKRSEMKTSMESLIHHFKLY 292
Query: 616 TEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMIS 675
TEG+ VP G Y+ +E PKGEFG+YLVSDG+++PYR KI++PGFAHL L M GHM++
Sbjct: 293 TEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDRMSQGHMLA 352
Query: 676 DVVTIIGTQDIVFGEIDR 693
DVV IIGTQDIVFGE+DR
Sbjct: 353 DVVAIIGTQDIVFGEVDR 370
>gi|392598090|gb|EIW87412.1| NADH-ubiquinone oxidoreductase [Coniophora puteana RWD-64-598 SS2]
Length = 480
Score = 440 bits (1132), Expect = e-120, Method: Compositional matrix adjust.
Identities = 211/401 (52%), Positives = 281/401 (70%), Gaps = 29/401 (7%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+++ + +NFGPQHPAAHGVLR+ILEL GE + +ADPH+GLLHR TEKL E +TY Q+LPY
Sbjct: 81 KLRHFTVNFGPQHPAAHGVLRMILELNGEEILRADPHVGLLHRGTEKLIEYKTYTQALPY 140
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVSMM NE + +A+EKLLNI++P RA++IR +F EITR+L+HLM + +H++D+G
Sbjct: 141 FDRLDYVSMMTNELCFSLAVEKLLNIEVPERAKWIRTLFGEITRVLSHLMAVLTHAMDVG 200
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
A+ L+ F ERE L++ YE VSGARMHAAY RPGGV D+P
Sbjct: 201 ALTPFLWGFEEREKLMEFYERVSGARMHAAYVRPGGVAFDIPH----------------- 243
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LL+ I + +F +DE E ++T NRIWK+R VGIG+V+ + AL F+G
Sbjct: 244 --------GLLEDIHMWATQFSSRVDEIEEVVTGNRIWKERTVGIGIVTAQEALDYSFSG 295
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ WDLRK PY+ Y+ + F++P+GKNGD YDRYL R++E R+S II QC+
Sbjct: 296 VMLRGSGIPWDLRKVAPYDKYDEVEFEVPVGKNGDCYDRYLCRVQEFRESLHIIHQCLNK 355
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+ + G V ++NK+ P R +MK +ME LIHHFKLF+EG+ VP GE YS +E PKGE
Sbjct: 356 MPT--GAVKIDDNKLVPPPRASMKESMESLIHHFKLFSEGYSVPPGETYSAIEAPKGEMA 413
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISG--HMISDV 677
+YLVSDG N+PYR KIR+PGFAHL M+ H++ D+
Sbjct: 414 VYLVSDGTNRPYRCKIRAPGFAHLAGSDFMMRRKYHLLYDI 454
>gi|386813530|ref|ZP_10100754.1| NADH dehydrogenase I subunit D [planctomycete KSU-1]
gi|386403027|dbj|GAB63635.1| NADH dehydrogenase I subunit D [planctomycete KSU-1]
Length = 394
Score = 440 bits (1132), Expect = e-120, Method: Compositional matrix adjust.
Identities = 209/409 (51%), Positives = 277/409 (67%), Gaps = 27/409 (6%)
Query: 285 LNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDY 344
+N GPQHP+ HGVLRL+LEL+GE++ KA PHIG LHR EKLAE RTY Q +P DRLDY
Sbjct: 13 INMGPQHPSTHGVLRLLLELDGEMIIKATPHIGFLHRGVEKLAEYRTYHQCIPLTDRLDY 72
Query: 345 VSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLL 404
V+ N AY + +EKLL I IP RAQ+IRV+ E+TR+ +HL+W+ +H+LDIGAM V
Sbjct: 73 VAPFSNNLAYALTVEKLLGIDIPERAQHIRVLLCELTRIASHLLWLATHALDIGAMTVFF 132
Query: 405 YAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENR 464
Y FRERE + D +E VSGAR+H +Y R GGV ++LP
Sbjct: 133 YCFREREAIYDIFEMVSGARLHLSYIRIGGVAKELP------------------------ 168
Query: 465 QGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGS 524
G L+ F FP + EYETLLTDN IWK+R VG+G++S E A+ G +GP LRGS
Sbjct: 169 -GGFLEKTRKFVAEFPSRLKEYETLLTDNPIWKKRTVGVGIISAEDAIDYGLSGPSLRGS 227
Query: 525 GVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKG 584
GV WD+RK +PY Y+ +F +P+G+NGD YDRY VRIEEMRQSN I+ Q I L KG
Sbjct: 228 GVNWDIRKAEPYSCYDKYHFAVPLGENGDVYDRYRVRIEEMRQSNSIVHQAINIL--PKG 285
Query: 585 PVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSD 644
+I++ + P + ++++ ME +IHHFKL +G P GE+Y+ +E PKGE G Y++SD
Sbjct: 286 DIIASIPNVALPPKEDVETKMESMIHHFKLIIQGIRPPKGEVYASIEAPKGELGFYIISD 345
Query: 645 GANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G++ PYR+KIR P F +L++L +M+ G ++ DVV IG+ DIV GEIDR
Sbjct: 346 GSSNPYRLKIRPPSFVNLEALPKMVEGRLLPDVVATIGSLDIVLGEIDR 394
>gi|195037999|ref|XP_001990448.1| GH18233 [Drosophila grimshawi]
gi|193894644|gb|EDV93510.1| GH18233 [Drosophila grimshawi]
Length = 529
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 218/409 (53%), Positives = 281/409 (68%), Gaps = 27/409 (6%)
Query: 285 LNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDY 344
+NFGP HPAAHGVLR+ILEL+ E V ADPHIGLLHR TEKL E +TY Q+LPY DRLDY
Sbjct: 148 VNFGPAHPAAHGVLRMILELDNETVLSADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 207
Query: 345 VSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLL 404
VS M E AY +A+EKLLNI+IP RA+YIR + E+ RL NH M + + LD GA+ L
Sbjct: 208 VSCMACEQAYALAVEKLLNIEIPARAKYIRTLCAELMRLTNHTMAVATSVLDCGAITPLF 267
Query: 405 YAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENR 464
+ F ERE L + E +SGAR+HAAY RPGGV +D+P
Sbjct: 268 WLFEEREKLYEFSERLSGARLHAAYIRPGGVAQDMPLGFGH------------------- 308
Query: 465 QGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGS 524
L +FIE F R +DE E ++TDNRIW+ R +GIG +S AL+ G TGP+LR +
Sbjct: 309 --DLYNFIEQFKER----LDEVEDVVTDNRIWRMRNIGIGTISAHDALNFGCTGPVLRAT 362
Query: 525 GVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKG 584
GVKWDLRK+QPY+ Y ++FD+ IG GD YDRYLVR+ EMR+S +II+QC+ + + G
Sbjct: 363 GVKWDLRKQQPYDAYADMDFDVVIGSQGDCYDRYLVRVREMRESCRIIQQCLNCMPA--G 420
Query: 585 PVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSD 644
V ++ KI P R MK+ MEDLIHHFK F++G+ VP G Y+ +E PKGEFG+YLVSD
Sbjct: 421 HVKVDDKKIMPPQRHKMKTGMEDLIHHFKHFSQGYSVPPGATYTAIESPKGEFGVYLVSD 480
Query: 645 GANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+++PYR KIR +AHL +S++ +++D+V IIG+ DIVFGEIDR
Sbjct: 481 GSSRPYRCKIRPASYAHLALMSKLAPMMLLADIVAIIGSLDIVFGEIDR 529
>gi|49147198|ref|YP_025791.1| NADH dehydrogenase subunit 7 [Pseudendoclonium akinetum]
gi|33439213|gb|AAQ18750.1| NADH dehydrogenase subunit 7 (mitochondrion) [Pseudendoclonium
akinetum]
Length = 396
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 216/413 (52%), Positives = 282/413 (68%), Gaps = 29/413 (7%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
+ + LNFGPQHPAAHGVLRLIL + GE V D HIGLLHR TEKL E +T LQ+LPY D
Sbjct: 13 RPFTLNFGPQHPAAHGVLRLILSMRGEQVLSTDTHIGLLHRGTEKLIEYKTVLQALPYFD 72
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDYVS+M EH+Y +A+E+L +++P RAQ+IR++F EITR+LNHL+ + ++D GA+
Sbjct: 73 RLDYVSVMSMEHSYCLAVERLTEMEVPRRAQFIRMLFAEITRVLNHLLAVTCFAMDTGAL 132
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
L+AF ERE L++ YE VSGARMH+AY+RPGGV DLP
Sbjct: 133 TPFLFAFEEREKLMEFYERVSGARMHSAYFRPGGVATDLP-------------------- 172
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
LL I + ++F IDE E LLT NRI+KQRLV IGV+ E A++ G +G +
Sbjct: 173 -----AGLLQDIHVWADQFASRIDEIEELLTGNRIFKQRLVNIGVLKAEDAIAWGVSGVL 227
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
LRGSG+ +DLRK Q Y+ Y+ + F++P+G N D YDRYL+RIEEMR+S IIKQ + +
Sbjct: 228 LRGSGIAYDLRKAQSYDAYDQVQFNVPVGTNSDCYDRYLLRIEEMRESLSIIKQTLDLVP 287
Query: 581 SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIY 640
+ GP+ + + S R KS+ME LI HFK T GF VP+GE Y E PKGEFG+
Sbjct: 288 T--GPIKPADGPVAS--RAEFKSDMESLIRHFKASTSGFAVPVGETYCSSEAPKGEFGVL 343
Query: 641 LVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
VS+GAN+PYR+KI+SP +A LQ++ + GH I+DVV IIG+ D+VFG IDR
Sbjct: 344 FVSNGANRPYRVKIKSPDYASLQAIDILGKGHYIADVVAIIGSLDVVFGSIDR 396
>gi|148266251|ref|YP_001232957.1| NADH dehydrogenase I subunit D [Geobacter uraniireducens Rf4]
gi|218534410|sp|A5G9B6.1|NUOD_GEOUR RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|146399751|gb|ABQ28384.1| NADH dehydrogenase subunit D [Geobacter uraniireducens Rf4]
Length = 390
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 210/409 (51%), Positives = 280/409 (68%), Gaps = 27/409 (6%)
Query: 285 LNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDY 344
+N GPQHP+ HGVLRLI+EL+GE+++K PHIG LHR EKL+E RTY Q++P DRLDY
Sbjct: 9 INMGPQHPSTHGVLRLIVELDGEIIQKVTPHIGYLHRGIEKLSEHRTYHQTIPLTDRLDY 68
Query: 345 VSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLL 404
++ M N YV+A+EKLL I +P RAQ IRV+ E+TRL +HL+WI H+LDIGAM V L
Sbjct: 69 LAPMSNNLGYVLAVEKLLGIDVPERAQVIRVIMAELTRLKSHLVWIACHALDIGAMTVFL 128
Query: 405 YAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENR 464
YAFRERE+++D YE VSGARM + ++R GG+ +D+PE
Sbjct: 129 YAFRERENIMDIYEMVSGARMTSNFFRVGGLSKDIPE----------------------- 165
Query: 465 QGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGS 524
+ + + FP + D YE LLT N IW QR +G GV+S E A+ G TGP LRGS
Sbjct: 166 --GFTAAVREVLDTFPGHFDTYEGLLTKNTIWLQRTIGNGVISAEDAIDYGITGPALRGS 223
Query: 525 GVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKG 584
GV WDLR+ PY Y +F +P+G+N D++DRY VR+ EMR+S KII+Q + L+ G
Sbjct: 224 GVDWDLRRDNPYSGYEKYDFKVPVGENCDTFDRYKVRLVEMRESVKIIRQALDSLKP--G 281
Query: 585 PVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSD 644
PV+++ +I P + N+ +++E LIHHFK+ +EGF P GE+Y VE PKGE G YLVSD
Sbjct: 282 PVLADEPQICYPPKENVYNSIEGLIHHFKIASEGFSTPEGEVYQSVEAPKGELGYYLVSD 341
Query: 645 GANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G+ KPYR++IR P F +LQ++ +M G MI+D+V +IGT DIV GEIDR
Sbjct: 342 GSTKPYRMRIRPPSFVNLQAIEKMAKGAMIADLVAVIGTLDIVLGEIDR 390
>gi|406966480|gb|EKD91893.1| hypothetical protein ACD_29C00317G0001, partial [uncultured
bacterium]
Length = 292
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 201/292 (68%), Positives = 239/292 (81%)
Query: 402 VLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILN 461
V LY FREREDL+DCYEAVSGAR+HA YYRPGGV +DLP+ MPQYK+S + K K +N
Sbjct: 1 VFLYCFREREDLMDCYEAVSGARLHATYYRPGGVAKDLPDSMPQYKASRWHSQKQIKKMN 60
Query: 462 ENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPML 521
+R+GSLLDFI DFTNRFPK IDEYE+LLTDNRI+KQR VGI VVSPERA +GFTGPML
Sbjct: 61 LSREGSLLDFIADFTNRFPKLIDEYESLLTDNRIFKQRTVGIAVVSPERAKQLGFTGPML 120
Query: 522 RGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRS 581
RGSGV+WDLR+KQPY +YN L+F IPIG NGD YDRYLVR+EEMRQSN II QC+ WL+
Sbjct: 121 RGSGVEWDLRRKQPYAVYNQLDFKIPIGTNGDCYDRYLVRVEEMRQSNHIISQCVDWLKK 180
Query: 582 NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYL 641
N GP+ ++ K++ P R MK +ME +IHHFK FTEG+ VP GE Y +EHPKGEFGIYL
Sbjct: 181 NPGPIKVDDYKVSPPPREMMKESMEGMIHHFKYFTEGYSVPAGEAYIAIEHPKGEFGIYL 240
Query: 642 VSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
VSDGANKPYR+KIR+ GF HL ++ E+ GHMI+D+V +I + D+VFGEIDR
Sbjct: 241 VSDGANKPYRLKIRAAGFPHLAAIDEICRGHMIADLVAVISSLDVVFGEIDR 292
>gi|195389048|ref|XP_002053190.1| GJ23477 [Drosophila virilis]
gi|194151276|gb|EDW66710.1| GJ23477 [Drosophila virilis]
Length = 501
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 224/427 (52%), Positives = 286/427 (66%), Gaps = 29/427 (6%)
Query: 269 HPFRKDFPVIE--IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKL 326
+P + FP I +S +NFGP HPAAHGVLR+ILEL+ E V ADPHIGLLHR TEKL
Sbjct: 102 NPSSRYFPPINRTFRSKFINFGPAHPAAHGVLRMILELDNETVLSADPHIGLLHRGTEKL 161
Query: 327 AEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNH 386
E +TY Q+LPY DRLDYVS M E AY +A+EKLLNI+IP RA+YIR + E+ RL NH
Sbjct: 162 IEYKTYTQALPYFDRLDYVSCMACEQAYSLAVEKLLNIEIPPRAKYIRTLCGELMRLTNH 221
Query: 387 LMWIGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQY 446
M + S LD GA+ L + F ERE L + E +SGAR+HAAY RPGGV +D+P
Sbjct: 222 TMAVSSSVLDCGAITPLFWLFEEREKLYEFSERLSGARLHAAYIRPGGVAQDMPI----- 276
Query: 447 KSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVV 506
L FI F++R +DE E ++TDNRIW+ R +GIG +
Sbjct: 277 ----------------GFSDDLYRFIMAFSDR----LDEVEDVVTDNRIWRMRNIGIGRI 316
Query: 507 SPERALSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMR 566
S AL+ G TGP+LR +G+KWDLRK+QPY+ Y + FD+ IG GD YDRYLVR+ EMR
Sbjct: 317 SAHDALNYGCTGPVLRATGIKWDLRKQQPYDAYADMKFDVAIGSQGDCYDRYLVRVLEMR 376
Query: 567 QSNKIIKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEI 626
+S II QC+ + G + ++ KI P R MK+ MEDLIHHFK F++G+ VP GE
Sbjct: 377 ESCSIILQCLNLM--PPGHIKVDDRKIMPPQRRKMKTGMEDLIHHFKHFSQGYCVPPGET 434
Query: 627 YSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDI 686
Y+ VE PKGEFG+YLVSDG+++PYR KIR + HL LS++ ++++DVV IIG+ DI
Sbjct: 435 YTAVESPKGEFGVYLVSDGSSRPYRCKIRPASYTHLALLSKLSPSYLLADVVAIIGSLDI 494
Query: 687 VFGEIDR 693
VFGEIDR
Sbjct: 495 VFGEIDR 501
>gi|15130890|emb|CAC48232.1| NADH dehydrogenase subunit 7 [Takakia lepidozioides]
Length = 364
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 216/394 (54%), Positives = 273/394 (69%), Gaps = 33/394 (8%)
Query: 295 HGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAY 354
HGVLR + E+ GEVV +A+PHIGLLHR TEKL E +TYLQ++P+ DRLDYVSMM EHAY
Sbjct: 1 HGVLRSVSEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQAIPHFDRLDYVSMMAQEHAY 60
Query: 355 VMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLLYAFREREDLL 414
A+E+L N ++P+RAQYIRV+F EITR+LNHL+ + +H++D+GA+ L+AF ERE LL
Sbjct: 61 SSAVERLCNCEVPLRAQYIRVLFREITRILNHLLALTTHAMDVGALTPFLWAFEEREKLL 120
Query: 415 DCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENRQGSLLDFIED 474
+ YE VSGARMHA+Y RPGGV +D+P L ED
Sbjct: 121 EFYERVSGARMHASYIRPGGVAQDMP----------------------------LGLSED 152
Query: 475 ---FTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGSGVKWDLR 531
FT +F IDE E +LT+NRI KQRLV IG V+ ++AL GF+G MLRGSGV WD R
Sbjct: 153 IFLFTQQFASRIDEIEEMLTNNRIRKQRLVDIGTVTAQQALDWGFSGVMLRGSGVCWDSR 212
Query: 532 KKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKGPVISNNN 591
K PY++YN L+FD+P+G GD YDRY +RI EMRQS +II Q + S G + +++
Sbjct: 213 KSAPYDVYNQLDFDVPVGTRGDRYDRYCIRIGEMRQSIRIIMQRPNQMPS--GMIKADDR 270
Query: 592 KITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKPYR 651
K+ P+R MK +ME IHHFKL+TEG VP Y+ E PKGEFG++LVS+G N+PYR
Sbjct: 271 KLCPPSRSQMKQSMESSIHHFKLYTEGVSVPASSTYTAAEAPKGEFGVFLVSNGTNRPYR 330
Query: 652 IKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQD 685
KIR+PGFAHLQ M HM +DVVTIIGTQD
Sbjct: 331 CKIRAPGFAHLQGPDFMSKHHMPADVVTIIGTQD 364
>gi|60117114|ref|YP_209577.1| NADH dehydrogenase subunit 7 [Polysphondylium pallidum]
gi|51339678|gb|AAU00592.1| NADH dehydrogenase subunit 7 [Polysphondylium pallidum]
Length = 406
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 215/420 (51%), Positives = 293/420 (69%), Gaps = 33/420 (7%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
IK++ LNFGPQHPAAHGVLRLI+EL+ E V++ DPHIGLLHR TEKL E +TY Q+LPY
Sbjct: 14 IKNFTLNFGPQHPAAHGVLRLIVELDSETVKRIDPHIGLLHRGTEKLIEFKTYTQALPYF 73
Query: 340 DRLDYVSMMCNEHAYVMAIEKL------LNIKIPIRAQYIRVMFDEITRLLNHLMWIGSH 393
DRLDYVSM EHAY +A+E+L + +++P+RA+ IR++F EITR+LNH++ +H
Sbjct: 74 DRLDYVSMQVQEHAYSLAVERLYLQSYGIELEVPVRAKVIRILFSEITRVLNHILATTTH 133
Query: 394 SLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRN 453
++D+GA+ L+AF ERE L++ YE VSGARMH+AY RPGGV DLP
Sbjct: 134 AMDVGALTPFLWAFEEREKLMEFYERVSGARMHSAYIRPGGVAFDLP------------- 180
Query: 454 NKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALS 513
LN L + I F ++ K ++E E +L +NRIWKQRLV IG VS E + +
Sbjct: 181 ------LN------LSEDIYKFCQQYRKRLEEIEDMLINNRIWKQRLVDIGTVSSEESQN 228
Query: 514 MGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIK 573
GFTG MLRGSG+ +D+RK PY+ Y+ NF+I +G++ +SY R+++RI+EM QS II+
Sbjct: 229 AGFTGVMLRGSGIIYDIRKNYPYDDYDKYNFNIIVGEDNNSYTRFILRIKEMYQSLMIIE 288
Query: 574 QCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHP 633
Q + L+ G + + +P R +K +ME I+HFK F+EG+ +P EIY+ VE P
Sbjct: 289 QALNNLKP--GLIKIEGLNLVAPDRAFVKKDMESCINHFKYFSEGYVIPANEIYTIVEAP 346
Query: 634 KGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
KGEFG+YL S+ KPYR +I++PGF HLQ L+ M H+++DVVT+IGTQDIVFGE+DR
Sbjct: 347 KGEFGVYLKSNNTAKPYRCRIKAPGFLHLQGLNMMGKDHLLADVVTLIGTQDIVFGEVDR 406
>gi|383761829|ref|YP_005440811.1| NADH-quinone oxidoreductase subunit D [Caldilinea aerophila DSM
14535 = NBRC 104270]
gi|381382097|dbj|BAL98913.1| NADH-quinone oxidoreductase chain D [Caldilinea aerophila DSM 14535
= NBRC 104270]
Length = 609
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 233/567 (41%), Positives = 318/567 (56%), Gaps = 73/567 (12%)
Query: 165 NFRFEQLIDLCGIDYSIYNKNINSDNSNKNLRFAIVLHLLSLNYNWRLRVRVFAENNELP 224
+ R+E LID+ +D S+ + RF V L S + L + E+ + P
Sbjct: 78 HLRYETLIDVSAVD--------RSELPVSDHRFHTVYQLRSYSRKQHLMIVCPLEDADEP 129
Query: 225 RLHSITSLWSSANWYEREAFDLFGIFFDGHDDLRRLLTDYGFVGHPFRKDFPV------- 277
S+T ++S ANW ERE +DL G+ F GH D RR+L + HP +K PV
Sbjct: 130 TAPSLTGVYSGANWPEREVWDLMGVRFAGHPDHRRILMPENWPNHPLQKQVPVGGEEVPF 189
Query: 278 ----------------IEIKSYK-------------LNFGPQHPAAHGVLRLILELEGEV 308
+E KS +N GP HP+ HGVLRL++EL+GE
Sbjct: 190 TLTWEDPEFESLGKQILEAKSVPPKLPPGMNLENMVINLGPHHPSTHGVLRLVVELDGET 249
Query: 309 VRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPI 368
V D +G LH EK E + Y + Y DR+DY+S M N Y +A+EKLL ++IP
Sbjct: 250 VVNVDADLGYLHSGFEKTGENKRYKDFVYYTDRMDYLSAMSNNLGYCLAVEKLLGVEIPP 309
Query: 369 RAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMG--VLLYAFREREDLLDCYEAVSGARMH 426
RAQ +RV+ E+ R+ +HL W+ +H LD+ G +L+YA RERE +LD +E GAR+
Sbjct: 310 RAQALRVIMAELQRIASHLFWLSTHVLDVSGTGMSLLMYATRERERILDLFEMACGARLT 369
Query: 427 AAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEY 486
Y R GGV RD+P + L +E+F P+ IDEY
Sbjct: 370 VGYMRVGGVSRDIPP-------------------------AFLPHLEEFLKIMPEQIDEY 404
Query: 487 ETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDI 546
E +LT +W +RL+GIG ++ E AL MG TGPMLRGSGV WDLR+ PY Y +F +
Sbjct: 405 ERMLTHGPLWSERLIGIGKITREEALDMGLTGPMLRGSGVDWDLRRDAPYSGYENYDFKV 464
Query: 547 PIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKGPVISNNNKITSPARINMKSNME 606
P+ GD Y RYLVR+EEMRQS +II+Q + L GP + + KIT P R + +ME
Sbjct: 465 PVLNEGDCYARYLVRMEEMRQSLRIIRQAVDNL--PDGPYRAEDRKITPPPRAELDISME 522
Query: 607 DLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLS 666
LIHHFKL TEGF+VP G +Y +E KGE G ++ SDG +PYR+ +R P F +L ++S
Sbjct: 523 ALIHHFKLMTEGFHVPPGMVYHGIESSKGELGFFIYSDGTARPYRLHVRGPSFNNLYAIS 582
Query: 667 EMISGHMISDVVTIIGTQDIVFGEIDR 693
+M GHM+SDV+T IG+ DIV GE+DR
Sbjct: 583 KMSKGHMLSDVITNIGSIDIVLGEVDR 609
>gi|195111610|ref|XP_002000371.1| GI10189 [Drosophila mojavensis]
gi|193916965|gb|EDW15832.1| GI10189 [Drosophila mojavensis]
Length = 478
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 219/445 (49%), Positives = 293/445 (65%), Gaps = 32/445 (7%)
Query: 249 IFFDGHDDLRRLLTDYGFVGHPFRKDFPVIEIKSYKLNFGPQHPAAHGVLRLILELEGEV 308
+F+ D+ ++ G V P + F +S +NFGP HPAAHGVLR++LEL+ E
Sbjct: 66 VFYPVGDEWKKPPNPKGKVVPPMDRTF-----RSKFVNFGPAHPAAHGVLRMMLELDNET 120
Query: 309 VRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPI 368
V ADPHIGLLHR TEKL E +TY Q++PY R DYVS M E AY +A+EKLLNI++P
Sbjct: 121 VLSADPHIGLLHRGTEKLIEHKTYTQAVPYFARTDYVSCMSCEQAYALAVEKLLNIEVPP 180
Query: 369 RAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAA 428
RA+YIR + E+ RL NH M IG+ LD GA+ L + F ERE L + E +SGAR+HAA
Sbjct: 181 RAKYIRTLCGELMRLTNHTMAIGTSVLDCGAITPLFWLFEEREKLYEFSERLSGARLHAA 240
Query: 429 YYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYET 488
Y RPGGV D+P L + L +F++ FT R +DE E
Sbjct: 241 YIRPGGVAMDMP-------------------LGYGKD--LHEFLKAFTQR----LDEVED 275
Query: 489 LLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPI 548
++TDNRIW+ R + IG +S AL+ G TGP+LR +GVKWDLRK+QPY+ Y + F++PI
Sbjct: 276 VVTDNRIWRMRNIDIGRISAHEALNYGCTGPVLRATGVKWDLRKQQPYDAYAAMKFNVPI 335
Query: 549 GKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDL 608
G GD YDRYLVR+ EMR+S I+ QC+ + G + ++ K+ P R MK+ MEDL
Sbjct: 336 GSQGDCYDRYLVRMREMRESCSIMLQCLDQM--PPGNIKVDDRKVAPPQRSKMKTGMEDL 393
Query: 609 IHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEM 668
IHHFK F++G+ VP G Y+ +E PKGEFG+YLVSDG+++PYR KIR+ + HL LS++
Sbjct: 394 IHHFKFFSQGYNVPPGATYTAIESPKGEFGVYLVSDGSSRPYRCKIRAASYTHLALLSKL 453
Query: 669 ISGHMISDVVTIIGTQDIVFGEIDR 693
++++DVV IIG+ DIVFGEIDR
Sbjct: 454 SPTYLLADVVAIIGSLDIVFGEIDR 478
>gi|160688745|gb|ABX45161.1| NADH dehydrogenase subunit 7 [Polysphondylium pallidum]
Length = 406
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 217/420 (51%), Positives = 293/420 (69%), Gaps = 33/420 (7%)
Query: 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYM 339
IK++ LNFGPQHPAAHGVLRLI+EL+ E V++ DPHIGLLHR TEKL E +TY Q+LPY
Sbjct: 14 IKNFTLNFGPQHPAAHGVLRLIVELDSETVKRIDPHIGLLHRGTEKLIEYKTYTQALPYF 73
Query: 340 DRLDYVSMMCNEHAYVMAIEKL------LNIKIPIRAQYIRVMFDEITRLLNHLMWIGSH 393
DRLDYVSM EHAY +A+E+L + ++IP+RA+ IR++F EITR+LNH++ +H
Sbjct: 74 DRLDYVSMQVQEHAYSLAVERLYLQSYDIELEIPVRAKVIRILFSEITRVLNHILATTTH 133
Query: 394 SLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRN 453
++D+GA+ L+AF ERE L++ YE VSGARMH+AY RPGGV DLP
Sbjct: 134 AMDVGALTPFLWAFEEREKLMEFYERVSGARMHSAYIRPGGVAFDLP------------- 180
Query: 454 NKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALS 513
LN L + I F ++ K ++E E +L +NRIWKQRLV IG VS E + +
Sbjct: 181 ------LN------LSEDIYTFCQQYRKRLEEIEDMLINNRIWKQRLVDIGTVSMEDSQN 228
Query: 514 MGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIK 573
GFTG MLRGSGV +D+RK PY+ Y+ NF+I +G++ +SY R+++RI+EM QS II+
Sbjct: 229 AGFTGVMLRGSGVIYDIRKNYPYDDYDKYNFNIIVGEDNNSYTRFILRIKEMYQSLIIIE 288
Query: 574 QCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHP 633
Q + L+ G + + +P R +K +ME I+HFK F+EG+ +P EIY+ VE P
Sbjct: 289 QALNNLKP--GLIKIEGLNLVAPDRAFVKKDMESCINHFKYFSEGYIIPSNEIYTIVEAP 346
Query: 634 KGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
KGEFG+YL S+ KPYR +I++PGF HLQ L+ M H+++DVVT+IGTQDIVFGE+DR
Sbjct: 347 KGEFGVYLKSNNTAKPYRCRIKAPGFLHLQGLNMMGKDHLLADVVTLIGTQDIVFGEVDR 406
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.141 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,755,813,878
Number of Sequences: 23463169
Number of extensions: 531387124
Number of successful extensions: 1083962
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 12255
Number of HSP's successfully gapped in prelim test: 279
Number of HSP's that attempted gapping in prelim test: 1054419
Number of HSP's gapped (non-prelim): 15223
length of query: 693
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 543
effective length of database: 8,839,720,017
effective search space: 4799967969231
effective search space used: 4799967969231
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 81 (35.8 bits)