BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5227
(693 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FUG|4 Chain 4, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|D Chain D, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|M Chain M, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|V Chain V, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|3I9V|4 Chain 4, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3I9V|D Chain D, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3IAM|4 Chain 4, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAM|D Chain D, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAS|4 Chain 4, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|D Chain D, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|M Chain M, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|V Chain V, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3M9S|4 Chain 4, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|3M9S|D Chain D, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|2YBB|4 Chain 4, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|4HEA|4 Chain 4, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
pdb|4HEA|E Chain E, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
Length = 409
Score = 367 bits (941), Expect = e-101, Method: Compositional matrix adjust.
Identities = 188/410 (45%), Positives = 259/410 (63%), Gaps = 29/410 (7%)
Query: 285 LNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDY 344
LN GPQHP+ HGVLRL++ L GE V + PHIG LH EK E RTYLQ++ Y R+DY
Sbjct: 28 LNVGPQHPSTHGVLRLMVTLSGEEVLEVVPHIGYLHTGFEKTMEHRTYLQNITYTPRMDY 87
Query: 345 VSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLL 404
+ ++ AY +A+EKLL +P RA+ IRV+ +E++RL +HL+++G+ LD+GA+
Sbjct: 88 LHSFAHDLAYALAVEKLLGAVVPPRAETIRVILNELSRLASHLVFLGTGLLDLGALTPFF 147
Query: 405 YAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLP-EIMPQYKSSIIRNNKATKILNEN 463
YAFRERE +LD +E V+G R H Y R GGV DLP E +P+ K
Sbjct: 148 YAFRERETILDLFEWVTGQRFHHNYIRIGGVKEDLPEEFVPELK---------------- 191
Query: 464 RQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRG 523
LL+ + P IDEYE L ++ I+ +R G+GV+ PE A+ +G TG LR
Sbjct: 192 ---KLLEVL-------PHRIDEYEALFAESPIFYERARGVGVIPPEVAIDLGLTGGSLRA 241
Query: 524 SGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNK 583
SGV +D+RK PY Y FD+P+G+ GD +DR LVRI EMR+S KIIKQ ++ R
Sbjct: 242 SGVNYDVRKAYPYSGYETYTFDVPLGERGDVFDRMLVRIREMRESVKIIKQALE--RLEP 299
Query: 584 GPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVS 643
GPV N +IT P R ++++ME +I+HFK +TEGF+ P GE+Y E +GE G Y+VS
Sbjct: 300 GPVRDPNPQITPPPRHLLETSMEAVIYHFKHYTEGFHPPKGEVYVPTESARGELGYYIVS 359
Query: 644 DGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
DG + PYR+K+R+P F +LQSL G + D+V II + D V G++DR
Sbjct: 360 DGGSMPYRVKVRAPSFVNLQSLPYACKGEQVPDMVAIIASLDPVMGDVDR 409
>pdb|2FUG|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|O Chain O, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|X Chain X, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|3I9V|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3I9V|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3IAM|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAM|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAS|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|O Chain O, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|X Chain X, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3M9S|6 Chain 6, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|3M9S|F Chain F, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|2YBB|6 Chain 6, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|4HEA|6 Chain 6, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
pdb|4HEA|G Chain G, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
Length = 181
Score = 162 bits (409), Expect = 7e-40, Method: Composition-based stats.
Identities = 79/147 (53%), Positives = 100/147 (68%), Gaps = 3/147 (2%)
Query: 27 DKLINWTRTSSMWPMTFGLACCAIEMMHAGASRYDLDRFGI-MFRPSPRQSDVMIVAGTL 85
+KL+ W R++S+WP TFGLACCAIEMM + +R DL RFG +FR SPRQ+DVMIVAG L
Sbjct: 25 EKLVAWGRSNSLWPATFGLACCAIEMMASTDARNDLARFGSEVFRASPRQADVMIVAGRL 84
Query: 86 CNKMAPALRKVYDQMTEPKWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDVYIPGCPPT 145
KMAP +R+V++QM +PKWVISMG+CA+ D +VPVDVY+PGCPP
Sbjct: 85 SKKMAPVMRRVWEQMPDPKWVISMGACAS-SGGMFNNYAIVQNVDSVVPVDVYVPGCPPR 143
Query: 146 AEALLYDYYSTMKILRDHV-NFRFEQL 171
EAL+Y K +R N R E+L
Sbjct: 144 PEALIYAVMQLQKKVRGQAYNERGERL 170
>pdb|2FUG|5 Chain 5, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|E Chain E, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|N Chain N, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|W Chain W, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|3I9V|5 Chain 5, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3I9V|E Chain E, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3IAM|5 Chain 5, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAM|E Chain E, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAS|5 Chain 5, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|E Chain E, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|N Chain N, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|W Chain W, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3M9S|5 Chain 5, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|3M9S|E Chain E, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|2YBB|5 Chain 5, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|4HEA|5 Chain 5, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
pdb|4HEA|F Chain F, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
Length = 207
Score = 86.3 bits (212), Expect = 5e-17, Method: Composition-based stats.
Identities = 46/90 (51%), Positives = 58/90 (64%), Gaps = 8/90 (8%)
Query: 196 RFAIVLHLLSLNYNW------RLRVRVFAENNELPRLHSITSLWSSANWYEREAFDLFGI 249
RFA+V L+SL W R VRV+ E PRL ++T LW SAN+ ERE +DLFGI
Sbjct: 67 RFAVVYELVSLP-GWKDGDGSRFFVRVYVPE-EDPRLPTVTDLWGSANFLEREVYDLFGI 124
Query: 250 FFDGHDDLRRLLTDYGFVGHPFRKDFPVIE 279
F+GH DLR++LT GHP RKD+P+ E
Sbjct: 125 VFEGHPDLRKILTPEDLEGHPLRKDYPLGE 154
>pdb|3MCR|A Chain A, Crystal Structure Of Nadh Dehydrogenase Subunit C
(Tfu_2693) From Thermobifida Fusca Yx-Er1 At 2.65 A
Resolution
Length = 213
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 160 LRDHVNFRFEQLIDLCGIDXXXXXXXXXXXXXXXXLRFAIVLHLLSLNYNWRLRVRVFAE 219
LRD RFE + + G+ V L S+ +N+ +R+ V
Sbjct: 125 LRDDPALRFELCLGVTGVHYPEDEGN----------ELHAVYALRSITHNYEIRLEVSCP 174
Query: 220 NNELPRLHSITSLWSSANWYEREAFDLFGIFFDGHDDLRR 259
+++ P + SI S++ + +W+EREA+D FGI FDGH L R
Sbjct: 175 DSD-PHIPSIVSVYPTNDWHEREAWDFFGIIFDGHPALTR 213
>pdb|3MYR|B Chain B, Crystal Structure Of [nife] Hydrogenase From
Allochromatium Vinosum In Its Ni-A State
pdb|3MYR|D Chain D, Crystal Structure Of [nife] Hydrogenase From
Allochromatium Vinosum In Its Ni-A State
pdb|3MYR|F Chain F, Crystal Structure Of [nife] Hydrogenase From
Allochromatium Vinosum In Its Ni-A State
pdb|3MYR|H Chain H, Crystal Structure Of [nife] Hydrogenase From
Allochromatium Vinosum In Its Ni-A State
Length = 561
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 296 GVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYV 355
G LR+ +++G + +A G + R E + + R + ++ R+ V + + A V
Sbjct: 15 GHLRIEAQMDGATIAQAYSS-GTMVRGIETILKGRDPRDAWAFVQRICGVCTLVHGIASV 73
Query: 356 MAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLM 388
A+E L I++P+ AQ IR + + +H+M
Sbjct: 74 RAVEDALRIELPLNAQLIRNLMIGAQYIHDHVM 106
>pdb|3AYX|A Chain A, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An H2-Reduced Condition
pdb|3AYX|C Chain C, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An H2-Reduced Condition
pdb|3AYY|A Chain A, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In A Ferricyanide-Oxidized
Condition
pdb|3AYY|C Chain C, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In A Ferricyanide-Oxidized
Condition
pdb|3AYZ|A Chain A, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An Air-Oxidized Condition
pdb|3AYZ|C Chain C, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An Air-Oxidized Condition
Length = 596
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 61/131 (46%), Gaps = 5/131 (3%)
Query: 296 GVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYV 355
G +R + ++ V + G + R E + R + +++R+ V C+ A V
Sbjct: 29 GHMRCEVNVDENNVIQNAVSTGTMWRGLEVILRGRDPRDAWAFVERICGVCTGCHALASV 88
Query: 356 MAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLM-WIGSHSLD----IGAMGVLLYAFRER 410
A+E L+IKIP A IR + + ++ +H++ + H+LD + A+ A E
Sbjct: 89 RAVEDALDIKIPHNATLIREIMAKTLQIHDHIVHFYHLHALDWVNPVNALKADPQATSEL 148
Query: 411 EDLLDCYEAVS 421
+ L+ + +S
Sbjct: 149 QKLVSPHHPMS 159
>pdb|3RGW|L Chain L, Crystal Structure At 1.5 A Resolution Of An H2-Reduced,
O2-Tolerant Hydrogenase From Ralstonia Eutropha Unmasks
A Novel Iron-Sulfur Cluster
Length = 603
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 1/137 (0%)
Query: 296 GVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYV 355
G +R + ++ V + G + R E + + R + +++R+ V C+ A V
Sbjct: 28 GHMRCEVNVDANNVIRNAVSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGCHALASV 87
Query: 356 MAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLM-WIGSHSLDIGAMGVLLYAFREREDLL 414
A+E L+I+IP A IR + + ++ +H + + H+LD + L A +R L
Sbjct: 88 RAVENALDIRIPKNAHLIREIMAKTLQVHDHAVHFYHLHALDWVDVMSALKADPKRTSEL 147
Query: 415 DCYEAVSGARMHAAYYR 431
+ + A Y+R
Sbjct: 148 QQLVSPAHPLSSAGYFR 164
>pdb|1E3D|B Chain B, [nife] Hydrogenase From Desulfovibrio Desulfuricans Atcc
27774
pdb|1E3D|D Chain D, [nife] Hydrogenase From Desulfovibrio Desulfuricans Atcc
27774
Length = 542
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Query: 296 GVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYV 355
G LR+ +E+EG V+++A L R E + + R + + R V + A
Sbjct: 25 GHLRIEVEVEGGVIKEAR-SCATLFRGIETILKGRDPRDAQHFTQRTCGVCTYTHALAST 83
Query: 356 MAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLM-WIGSHSLD 396
+E +N IP A YIR + + +HL+ + H+LD
Sbjct: 84 RCLEDAINKPIPANATYIRNLVLGNQFMHDHLVHFYHLHALD 125
>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2
pdb|4EI3|A Chain A, Crystal Structure Of Human Argonaute2
Length = 859
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 9/100 (9%)
Query: 596 PARINMKSNMEDLIHHFKLFTEGFYVPL----GEIYSCVEHPKG----EFGIYLVSDGAN 647
P R+N + +E ++ HFK G P+ +Y+ + P G E + L +G +
Sbjct: 67 PRRVN-REIVEHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGKD 125
Query: 648 KPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIV 687
+ +++ I+ LQ+L + +SG + S I D+V
Sbjct: 126 RIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVV 165
>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex
Length = 861
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 9/100 (9%)
Query: 596 PARINMKSNMEDLIHHFKLFTEGFYVPL----GEIYSCVEHPKG----EFGIYLVSDGAN 647
P R+N + +E ++ HFK G P+ +Y+ + P G E + L +G +
Sbjct: 69 PRRVN-REIVEHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGKD 127
Query: 648 KPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIV 687
+ +++ I+ LQ+L + +SG + S I D+V
Sbjct: 128 RIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVV 167
>pdb|3QVC|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) Zymogen
From Plasmodium Falciparum
pdb|3QVI|A Chain A, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|B Chain B, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|C Chain C, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|D Chain D, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
Length = 451
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 12/116 (10%)
Query: 473 EDFTNRFPKNIDEYETL-LTDNRIWK-QRLVGIGVVSPERALSMGFTGPMLRGSGVKWDL 530
EDFTN F KN + + T +T + W +RL I V+ L+ GF+ + + +
Sbjct: 8 EDFTNTFMKNEESFNTFRVTKVKRWNAKRLFKILFVTVFIVLAGGFSYYIFENFVFQKNR 67
Query: 531 RKKQPYEI--YNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKG 584
+ + Y+ + F+I +SYDR + I+E + N IK+ +K NKG
Sbjct: 68 KINHIIKTSKYSTVGFNIE-----NSYDRLMKTIKEHKLKN-YIKESVKLF--NKG 115
>pdb|2FRV|L Chain L, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|B Chain B, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|D Chain D, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|F Chain F, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|H Chain H, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|J Chain J, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
Length = 536
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 2/102 (1%)
Query: 296 GVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYV 355
G LR+ +E+EG ++ A + L R E + + R + + R V + A V
Sbjct: 19 GHLRIEVEVEGGKIKNA-WSMSTLFRGLEMILKGRDPRDAQHFTQRACGVCTYVHALASV 77
Query: 356 MAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLM-WIGSHSLD 396
A++ + +KIP A +R + + +HL+ + H+LD
Sbjct: 78 RAVDNCVGVKIPENATLMRNLTMGAQYMHDHLVHFYHLHALD 119
>pdb|1FRV|B Chain B, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|1FRV|D Chain D, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
Length = 536
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 2/102 (1%)
Query: 296 GVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYV 355
G LR+ +E+EG ++ A + L R E + + R + + R V + A V
Sbjct: 19 GHLRIEVEVEGGKIKNA-WSMSTLFRGLEMILKGRDPRDAQHFTQRACGVCTYVHALASV 77
Query: 356 MAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLM-WIGSHSLD 396
A++ + +KIP A +R + + +HL+ + H+LD
Sbjct: 78 RAVDNCVGVKIPENATLMRNLTMGAQYMHDHLVHFYHLHALD 119
>pdb|1YQ9|H Chain H, Structure Of The Unready Oxidized Form Of [nife]
Hydrogenase
pdb|1YQ9|I Chain I, Structure Of The Unready Oxidized Form Of [nife]
Hydrogenase
Length = 536
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 2/102 (1%)
Query: 296 GVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYV 355
G LR+ +E+EG ++ A + L R E + + R + + R V + A V
Sbjct: 19 GHLRIEVEVEGGKIKNA-WSMSTLFRGLEMILKGRDPRDAQHFTQRACGVCTYVHALASV 77
Query: 356 MAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLM-WIGSHSLD 396
A++ + +KIP A +R + + +HL+ + H+LD
Sbjct: 78 RAVDNCVGVKIPENATLMRNLTMGAQYMHDHLVHFYHLHALD 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,139,078
Number of Sequences: 62578
Number of extensions: 897857
Number of successful extensions: 1841
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1827
Number of HSP's gapped (non-prelim): 21
length of query: 693
length of database: 14,973,337
effective HSP length: 106
effective length of query: 587
effective length of database: 8,340,069
effective search space: 4895620503
effective search space used: 4895620503
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)