BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5227
(693 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A6SY08|NUOD_JANMA NADH-quinone oxidoreductase subunit D OS=Janthinobacterium sp.
(strain Marseille) GN=nuoD PE=3 SV=1
Length = 417
Score = 754 bits (1946), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/415 (82%), Positives = 390/415 (93%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAEQ+TYLQS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTYLQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIEK+LNI++P+RAQYIRVMFDEITR+LNHLMW+G+H+LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEKMLNIEVPLRAQYIRVMFDEITRILNHLMWLGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AMGV LYAFREREDL+DCYEAVSGARMHAAYYRPGGVYRDLP+ MPQ+K+SIIRN KA
Sbjct: 123 AMGVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDTMPQHKASIIRNAKAIS 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNENRQGSLLDFIEDFTNRFP +DEYETLLTDNRIWKQRLVGIGVVSPERA++MGFTG
Sbjct: 183 QLNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGIGVVSPERAMAMGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSGV+WDLRKKQPYE+Y+L++FDIP+G NGD YDRYLVR+EEMRQSN+IIKQC++W
Sbjct: 243 AMLRGSGVEWDLRKKQPYEVYDLMDFDIPVGTNGDCYDRYLVRVEEMRQSNRIIKQCVEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPV+++N+K+ P+R+ MKSNMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRNNAGPVMTDNHKVAPPSRVGMKSNMEDLIHHFKLFTEGFHVPTGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YL+SDGANKPYR+KIR+PGF HLQ L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 VYLISDGANKPYRMKIRAPGFPHLQGLDEMAKGHMIADAVTIIGTQDIVFGEIDR 417
>sp|A4G641|NUOD_HERAR NADH-quinone oxidoreductase subunit D OS=Herminiimonas
arsenicoxydans GN=nuoD PE=3 SV=1
Length = 417
Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/415 (81%), Positives = 392/415 (94%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAEQ+TYLQS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTYLQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVM+IEK+LN+++P+RAQYIRVMFDEITR+LNHLMW+G+H+LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMSIEKMLNLEVPLRAQYIRVMFDEITRILNHLMWLGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AMGV LYAFREREDL+DCYEAVSGARMHAAYYRPGGVYRDLP+ MPQ+K+SIIRN KA
Sbjct: 123 AMGVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDAMPQHKASIIRNAKAIN 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNENRQGSLLDFIEDFTNRFP +DEYETLLTDNRIWKQRLVG+GVVSPERA++MGFTG
Sbjct: 183 KLNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGVGVVSPERAMAMGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG++WDLRKKQPYE+Y+LL+FDIP+G NGD YDRYLVR+EEMRQSN+IIKQC++W
Sbjct: 243 PMLRGSGIEWDLRKKQPYEVYDLLDFDIPVGTNGDCYDRYLVRVEEMRQSNRIIKQCVEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N G V+++N+K+ P+R++MKSNMEDLIHHFKLFTEGF+VP+GE Y+ VEHPKGEFG
Sbjct: 303 LRNNPGSVMTDNHKVAPPSRVDMKSNMEDLIHHFKLFTEGFHVPVGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YL+SDGANKPYR+KIR+PGF HLQ L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 VYLISDGANKPYRMKIRAPGFPHLQGLDEMAKGHMIADAVTIIGTQDIVFGEIDR 417
>sp|Q2YA24|NUOD_NITMU NADH-quinone oxidoreductase subunit D OS=Nitrosospira multiformis
(strain ATCC 25196 / NCIMB 11849) GN=nuoD PE=3 SV=1
Length = 417
Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/415 (78%), Positives = 379/415 (91%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +TY+QS+PY
Sbjct: 3 EIRNYTMNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEYKTYIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIEKLL +++PIRAQYIRVMFDEITR+LNHL+W+G+H+LD+G
Sbjct: 63 MDRLDYVSMMANEHAYVMAIEKLLQLEVPIRAQYIRVMFDEITRILNHLLWLGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFR+REDL+D YE+VSGARMHAAYYRPGGVYRDLP+ MPQYK+S I + K TK
Sbjct: 123 AMTVFLYAFRDREDLMDAYESVSGARMHAAYYRPGGVYRDLPDSMPQYKASKIHDEKTTK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
NENRQGSLLDFIEDFTNRFP +DEYETLLTDNRIWKQRLVGIG VSPERA+++GFTG
Sbjct: 183 ARNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGIGTVSPERAMALGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV+WDLRKKQPYE+Y+ L+FDIP+G NGD YDRYLVRIEE RQSN+II+QC+ W
Sbjct: 243 PMLRGSGVEWDLRKKQPYEVYDQLDFDIPVGVNGDCYDRYLVRIEEFRQSNRIIRQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+K+ P+R+NMK NME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVITDNHKVAPPSRVNMKQNMEELIHHFKLFTEGFHVPPGETYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYL+SDGAN PYR+KIR+PGFAHL +L EM GHMI+DVV IIGTQDIVFGEIDR
Sbjct: 363 IYLISDGANMPYRMKIRAPGFAHLAALDEMSRGHMIADVVAIIGTQDIVFGEIDR 417
>sp|B2JDM5|NUOD_BURP8 NADH-quinone oxidoreductase subunit D OS=Burkholderia phymatum
(strain DSM 17167 / STM815) GN=nuoD PE=3 SV=1
Length = 417
Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/415 (79%), Positives = 377/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIEKLL I +PIRA+YIRV+FDE+TR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVLAIEKLLGIDVPIRAKYIRVLFDEVTRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S IRN KA
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNTKALS 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNENRQGSLLDFIEDF NRFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL MG TG
Sbjct: 183 KLNENRQGSLLDFIEDFFNRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQMGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG++WDLRKKQPYE+Y+ ++FDIP+G NGD YDRYLVR+EEMRQS +I KQCI+W
Sbjct: 243 AMLRGSGIEWDLRKKQPYEVYDQMDFDIPVGVNGDCYDRYLVRVEEMRQSTRIAKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+++N+K+ P+R+ MKSNME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVMTDNHKVAPPSRVGMKSNMEELIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PG+AHL +L EM GHMI+D VTIIGTQDIVFGE+DR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEVDR 417
>sp|Q1LPW0|NUOD_RALME NADH-quinone oxidoreductase subunit D OS=Ralstonia metallidurans
(strain CH34 / ATCC 43123 / DSM 2839) GN=nuoD PE=3 SV=1
Length = 417
Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/415 (78%), Positives = 375/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAEQ+T++QS+PY
Sbjct: 3 DIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTWIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIE+LL +++PIRAQYIRVMFDEITRLLNHLMWIGSH+LD+G
Sbjct: 63 MDRLDYVSMMVNEHAYVMAIERLLGLEVPIRAQYIRVMFDEITRLLNHLMWIGSHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFRERED+ D YEAVSGARMHAAYYRPGGVYRDLP+ MPQY++S + N KA K
Sbjct: 123 AMAVFLYAFREREDMFDMYEAVSGARMHAAYYRPGGVYRDLPDTMPQYRASKVHNEKAIK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
++NE R GSLLDFIEDFTNRFP +DEYETLLTDNRIWKQRLV IGVV+PERAL MGFTG
Sbjct: 183 VMNEARSGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVDIGVVTPERALQMGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG++WDLRKKQPYE+Y+ ++FDIP+G GD Y RYLVR+EEMRQSN+IIKQCI W
Sbjct: 243 PMLRGSGIEWDLRKKQPYEVYDKMDFDIPVGTAGDCYSRYLVRVEEMRQSNRIIKQCIDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI+ N+K+ P+R++MKSNME+LIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 303 LRRNPGPVITENHKVAPPSRVDMKSNMEELIHHFKLFTEGIHVPAGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY +SDGANKPYR+KIR+PGF HL +L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYAISDGANKPYRLKIRAPGFVHLAALDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>sp|B3R3X0|NUOD_CUPTR NADH-quinone oxidoreductase subunit D OS=Cupriavidus taiwanensis
(strain R1 / LMG 19424) GN=nuoD PE=3 SV=1
Length = 417
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/415 (78%), Positives = 375/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAEQ+T++QS+PY
Sbjct: 3 DIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTWIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIE+LL +++P+RAQYIRVMFDEITRLLNHLMWIGSH+LD+G
Sbjct: 63 MDRLDYVSMMVNEHAYVMAIERLLGLEVPVRAQYIRVMFDEITRLLNHLMWIGSHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFRERED+ D YEAVSGARMHAAYYRPGGVYRDLP+ MPQY++S + N +A K
Sbjct: 123 AMAVFLYAFREREDMFDMYEAVSGARMHAAYYRPGGVYRDLPDTMPQYRASKVHNERAIK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R GSLLDFIEDFTNRFPK +DEYETLLTDNRIWKQRLV IGVVSPERAL MGFTG
Sbjct: 183 AMNEARSGSLLDFIEDFTNRFPKYVDEYETLLTDNRIWKQRLVDIGVVSPERALQMGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPYE+Y+ L+FD+P+G GD Y RYLVR+EEMRQSN+IIKQC+ W
Sbjct: 243 PMLRGSGIAWDLRKKQPYEVYDKLDFDVPVGVGGDCYARYLVRVEEMRQSNRIIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI+ N+K+ P+R++MKSNME+LIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 303 LRRNPGPVITENHKVAPPSRVDMKSNMEELIHHFKLFTEGIHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY +SDGANKPYR+KIR+PGFAHL +L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYAISDGANKPYRLKIRAPGFAHLAALDEMAKGHMIADAVTIIGTQDIVFGEIDR 417
>sp|B2T2F0|NUOD_BURPP NADH-quinone oxidoreductase subunit D OS=Burkholderia phytofirmans
(strain DSM 17436 / PsJN) GN=nuoD PE=3 SV=1
Length = 417
Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/415 (78%), Positives = 378/415 (91%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAETKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YVMAIEKLL I++P+RAQYIRVMFDE+TR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVMAIEKLLGIEVPVRAQYIRVMFDEVTRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S IRN KA
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNAKALS 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NENRQGSLLDFI+DF RFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL++G TG
Sbjct: 183 KMNENRQGSLLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALNLGMTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG++WDLRKKQPYE+Y+ L+FDIP+G NGD YDRYLVR+EEMRQS +I+KQCI+W
Sbjct: 243 AMLRGSGIEWDLRKKQPYEVYDKLDFDIPVGVNGDCYDRYLVRVEEMRQSTRIVKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+ +N+K+ P+R+ MKSNME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVMIDNHKVAPPSRVGMKSNMEELIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYL+SDGANKPYR+KIR+PG+AHL +L EM GHMI+D VTIIGTQDIVFGE+DR
Sbjct: 363 IYLISDGANKPYRLKIRAPGYAHLSTLDEMARGHMIADAVTIIGTQDIVFGEVDR 417
>sp|B2U7Q8|NUOD_RALPJ NADH-quinone oxidoreductase subunit D OS=Ralstonia pickettii
(strain 12J) GN=nuoD PE=3 SV=1
Length = 417
Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/415 (78%), Positives = 379/415 (91%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAEQ+T++QS+PY
Sbjct: 3 DIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTWIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIE+LL +++P+RAQYIRVMFDEITR++NHLMWIGSH+LD+G
Sbjct: 63 MDRLDYVSMMVNEHAYVMAIERLLGLEVPLRAQYIRVMFDEITRIMNHLMWIGSHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S +RN KA
Sbjct: 123 AMAVFLYAFREREDLFDMYEAVSGARMHAAYYRPGGVYRDLPDTMPQYKASKVRNEKALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN+ R GSLLDFIEDFTNRFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL+ GF+G
Sbjct: 183 ALNQTRSGSLLDFIEDFTNRFPKYVDEYETLLTDNRIWKQRLVGIGVVSPERALNKGFSG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG++WD+RKKQPYE+Y+ ++FDIP+G NGD YDRYLVR+EEMRQSN+II+QCI+W
Sbjct: 243 AMLRGSGIEWDVRKKQPYEVYDRIDFDIPVGVNGDCYDRYLVRVEEMRQSNRIIRQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+K+ P+R++MK+NME+LIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVITDNHKVAPPSRVDMKTNMEELIHHFKLFTEGMHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY +SDGANKPYR+KIR+PGF HL +L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYAISDGANKPYRLKIRAPGFVHLAALDEMAKGHMIADAVTIIGTQDIVFGEIDR 417
>sp|Q142H0|NUOD_BURXL NADH-quinone oxidoreductase subunit D OS=Burkholderia xenovorans
(strain LB400) GN=nuoD PE=3 SV=1
Length = 417
Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/415 (78%), Positives = 377/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAETKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YVMAIEKLL I +P+RAQYIRVMFDEITR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVMAIEKLLGIDVPVRAQYIRVMFDEITRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S IRN KA
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNAKALS 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NENRQGSLLDFI+DF RFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL++G TG
Sbjct: 183 KMNENRQGSLLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALNLGMTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG++WDLRKKQPYE+Y+ L+FDIP+G NGD YDRYLVR+EEMRQS +I+KQC++W
Sbjct: 243 AMLRGSGIEWDLRKKQPYEVYDKLDFDIPVGVNGDCYDRYLVRVEEMRQSTRIVKQCVEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+ +N+K+ P+R+ MKSNME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVMIDNHKVAPPSRVGMKSNMEELIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYL+SDGANKPYR+KIR+PG+AHL +L EM GHMI+D VTIIGTQDIVFGE+DR
Sbjct: 363 IYLISDGANKPYRLKIRAPGYAHLSTLDEMARGHMIADAVTIIGTQDIVFGEVDR 417
>sp|Q0KCS7|NUOD_CUPNH NADH-quinone oxidoreductase subunit D OS=Cupriavidus necator
(strain ATCC 17699 / H16 / DSM 428 / Stanier 337)
GN=nuoD PE=3 SV=1
Length = 417
Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/415 (78%), Positives = 377/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAEQ+T++QS+PY
Sbjct: 3 DIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTWIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIE+LL +++P+RAQYIRVMFDEITRLLNHLMWIGSH+LD+G
Sbjct: 63 MDRLDYVSMMVNEHAYVMAIERLLGLEVPVRAQYIRVMFDEITRLLNHLMWIGSHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFRERED+ D YEAVSGARMHAAYYRPGGVYRDLP+ MPQY++S + N +A K
Sbjct: 123 AMAVFLYAFREREDMFDMYEAVSGARMHAAYYRPGGVYRDLPDTMPQYRASKVHNERAIK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R GSLLDFIEDFTNRFPK +DEYETLLTDNRIWKQRLV IGVVSPERAL MGFTG
Sbjct: 183 AMNEARSGSLLDFIEDFTNRFPKYVDEYETLLTDNRIWKQRLVDIGVVSPERALQMGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG++WDLRKKQPYE+Y+ L+FD+P+G GD Y RYLVR+EEMRQSN+II+QC++W
Sbjct: 243 PMLRGSGIEWDLRKKQPYEVYDKLDFDVPVGVGGDCYARYLVRVEEMRQSNRIIRQCVEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+K+ P+R++MKSNME+LIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 303 LRRNPGPVITDNHKVAPPSRVDMKSNMEELIHHFKLFTEGMHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY +SDGANKPYR+KIR+PGF HL +L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYAISDGANKPYRLKIRAPGFPHLAALDEMAKGHMIADAVTIIGTQDIVFGEIDR 417
>sp|Q473U0|NUOD_CUPPJ NADH-quinone oxidoreductase subunit D OS=Cupriavidus pinatubonensis
(strain JMP134 / LMG 1197) GN=nuoD PE=3 SV=1
Length = 417
Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/415 (78%), Positives = 377/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAEQ++++Q++PY
Sbjct: 3 DIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKSWIQNVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIE+LL I++PIRAQYIRVMFDEITRLLNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMSNEHAYVMAIERLLGIEVPIRAQYIRVMFDEITRLLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFRERED+ D YEAVSGARMHAAYYRPGGVYRDLP+ MPQY++S + N +A K
Sbjct: 123 AMAVFLYAFREREDMFDMYEAVSGARMHAAYYRPGGVYRDLPDTMPQYRASKVHNERAIK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
++NE R GSLLDFIEDFTNRFPK +DEYETLLTDNRIWKQRLV IGVVSPERAL MGFTG
Sbjct: 183 VMNEARSGSLLDFIEDFTNRFPKYVDEYETLLTDNRIWKQRLVDIGVVSPERALQMGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPYE+Y+ ++FD+P+G GD Y RYLVR+EEMRQSN+IIKQCI+W
Sbjct: 243 PMLRGSGIAWDLRKKQPYEVYDKMDFDVPVGVGGDCYARYLVRVEEMRQSNRIIKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+K+ P+R++MKSNME+LIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 303 LRRNPGPVITDNHKVAPPSRVDMKSNMEELIHHFKLFTEGMHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY +SDGANKPYR+KIR+PGF HL +L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYAISDGANKPYRLKIRAPGFPHLAALDEMAKGHMIADAVTIIGTQDIVFGEIDR 417
>sp|Q1GZL2|NUOD_METFK NADH-quinone oxidoreductase subunit D OS=Methylobacillus
flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=nuoD
PE=3 SV=1
Length = 417
Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/415 (79%), Positives = 372/415 (89%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHR TEKLAE RTYLQS+PY
Sbjct: 3 EIRNYTMNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAENRTYLQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIEKLL +++P+RAQYIRVMFDEITR+LNHL+W+G+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHAYVMAIEKLLGLEVPLRAQYIRVMFDEITRILNHLLWLGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL DCYEAVSGARMHAAYYRPGGVYRDLP+ MPQY+ S +R+ + K
Sbjct: 123 AMTVFLYAFREREDLFDCYEAVSGARMHAAYYRPGGVYRDLPDRMPQYEESTVRSKEDVK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNENRQGSLLDFIEDFTNRFP +DEYETLLTDNRIWKQR VGIGVVSPERA+++G TG
Sbjct: 183 QLNENRQGSLLDFIEDFTNRFPAYVDEYETLLTDNRIWKQRTVGIGVVSPERAMALGMTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV WDLRKKQPYE+Y+ L+FDIPIG NGD YDRYLVRIEE RQSN+IIKQCI W
Sbjct: 243 PMLRGSGVAWDLRKKQPYEVYDRLDFDIPIGVNGDCYDRYLVRIEEFRQSNRIIKQCIDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVIS+N K+ P R MK +ME LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVISDNTKVAPPPREEMKHDMEALIHHFKLFTEGFHVPAGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYL+SDGANKPYR+KIR+PGFAHL +L EM GHMI+D+V IIGTQDIVFGEIDR
Sbjct: 363 IYLISDGANKPYRLKIRAPGFAHLAALDEMTRGHMIADLVAIIGTQDIVFGEIDR 417
>sp|Q3SJQ4|NUOD_THIDA NADH-quinone oxidoreductase subunit D OS=Thiobacillus denitrificans
(strain ATCC 25259) GN=nuoD PE=3 SV=1
Length = 417
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/415 (77%), Positives = 375/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T+LQ+LPY
Sbjct: 3 EIRNYTMNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEHKTFLQALPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIEKLL I++P RAQYIRVMFDEITR+LNHL+W+G+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHAYVMAIEKLLGIEVPERAQYIRVMFDEITRVLNHLLWLGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+DCYEAVSGARMHAAYYRPGGVYRDLP+ MPQY++ RN K
Sbjct: 123 AMTVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDRMPQYQAQHTRNESTMK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+N NRQGSLLDFIEDFT RFP +DEYETLLTDNRIWKQR VGIGVV+PERAL++GFTG
Sbjct: 183 SMNANRQGSLLDFIEDFTTRFPAYVDEYETLLTDNRIWKQRTVGIGVVAPERALALGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV+WDLRKKQPYE+Y ++FDIP+G NGD YDRYLVRIEEMRQSN+II+QC+ W
Sbjct: 243 PMLRGSGVEWDLRKKQPYEVYERMDFDIPVGTNGDCYDRYLVRIEEMRQSNRIIRQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GP++ +N+K++ P R++MK NME+LIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPIMVDNHKVSPPPRVDMKQNMEELIHHFKLFTEGMHVPAGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL++L EM GHMI+DVV IIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRMKIRAPGFAHLEALDEMSRGHMIADVVAIIGTQDIVFGEIDR 417
>sp|A9AFZ0|NUOD_BURM1 NADH-quinone oxidoreductase subunit D OS=Burkholderia multivorans
(strain ATCC 17616 / 249) GN=nuoD PE=3 SV=1
Length = 417
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/415 (78%), Positives = 373/415 (89%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAENKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIEKLL I +P RAQYIRV+FDEITR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVLAIEKLLGIAVPERAQYIRVLFDEITRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S IRN KA
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNEKALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R GS+LDFI+DF RFPK IDEYETLLTDNRIWKQRLVGIGVVSPERAL MG TG
Sbjct: 183 KMNEARSGSVLDFIDDFFTRFPKCIDEYETLLTDNRIWKQRLVGIGVVSPERALQMGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPYE+Y+ ++FD+P+G NGD YDRYLVR+EEMRQS +I KQCI+W
Sbjct: 243 PMLRGSGIAWDLRKKQPYEVYDRMDFDVPVGVNGDCYDRYLVRVEEMRQSVRIAKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+++N+K+ P+R+ MK+NMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVMTDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL SL EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>sp|Q82TU6|NUOD_NITEU NADH-quinone oxidoreductase subunit D OS=Nitrosomonas europaea
(strain ATCC 19718 / NBRC 14298) GN=nuoD PE=3 SV=1
Length = 417
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/415 (78%), Positives = 377/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y +NFGPQHPAAHGVLRL++EL+GEV+R+ADPHIGLLHRATEKLAE +TY+QS+PY
Sbjct: 3 EIRNYTMNFGPQHPAAHGVLRLVMELDGEVIRRADPHIGLLHRATEKLAENKTYVQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIEKLL I++PIRAQYIRVMFDEITR+LNHL+W+G+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHAYVMAIEKLLQIEVPIRAQYIRVMFDEITRILNHLLWLGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+DCYEAVSGAR+HAAYYRPGGVYRDLP+ MPQY+ S I + KAT+
Sbjct: 123 AMTVFLYAFREREDLMDCYEAVSGARLHAAYYRPGGVYRDLPDNMPQYQPSAIHDEKATR 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
NENRQGSLLDFIEDFT RFP ID+YE LLTDNRIWKQRLV IGVVSP+RA ++GFTG
Sbjct: 183 ARNENRQGSLLDFIEDFTRRFPGYIDDYEALLTDNRIWKQRLVDIGVVSPDRAKALGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV+WDLRKKQPYE+Y+ ++FDIP+G NGD YDRYLVRIEEMRQSN IIKQC++W
Sbjct: 243 PMLRGSGVEWDLRKKQPYEVYDQVDFDIPVGANGDCYDRYLVRIEEMRQSNHIIKQCVEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+K+ P+R+ MK NME++IHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVITDNHKVAPPSRLAMKQNMEEMIHHFKLFTEGMHVPRGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY+VSDGANKPYR+KIR+PGFAHL +L EM GHMI+D+V IIGTQDIVFGEIDR
Sbjct: 363 IYIVSDGANKPYRLKIRAPGFAHLAALDEMTKGHMIADLVAIIGTQDIVFGEIDR 417
>sp|B4E5L9|NUOD_BURCJ NADH-quinone oxidoreductase subunit D OS=Burkholderia cepacia
(strain J2315 / LMG 16656) GN=nuoD PE=3 SV=1
Length = 417
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/415 (78%), Positives = 374/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIEKLL I++P RAQYIRV+FDEITR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVLAIEKLLGIEVPERAQYIRVLFDEITRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S IRN KA
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNEKALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R GS+LDFI+DF RFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL MG TG
Sbjct: 183 KMNEARSGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQMGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPYE+Y+ ++FD+P+G NGD YDRYLVR+EEMRQS +I KQCI+W
Sbjct: 243 PMLRGSGIAWDLRKKQPYEVYDRMDFDVPVGVNGDCYDRYLVRVEEMRQSIRIAKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+++N+K+ P+R+ MK+NMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVMTDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL SL EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>sp|A0K920|NUOD_BURCH NADH-quinone oxidoreductase subunit D OS=Burkholderia cenocepacia
(strain HI2424) GN=nuoD PE=3 SV=1
Length = 417
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/415 (78%), Positives = 374/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIEKLL I++P RAQYIRV+FDEITR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVLAIEKLLGIEVPERAQYIRVLFDEITRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S IRN KA
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNEKALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R GS+LDFI+DF RFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL MG TG
Sbjct: 183 KMNEARSGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQMGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPYE+Y+ ++FD+P+G NGD YDRYLVR+EEMRQS +I KQCI+W
Sbjct: 243 PMLRGSGIAWDLRKKQPYEVYDRMDFDVPVGVNGDCYDRYLVRVEEMRQSIRIAKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+++N+K+ P+R+ MK+NMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVMTDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL SL EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>sp|Q1BV16|NUOD_BURCA NADH-quinone oxidoreductase subunit D OS=Burkholderia cenocepacia
(strain AU 1054) GN=nuoD PE=3 SV=1
Length = 417
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/415 (78%), Positives = 374/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIEKLL I++P RAQYIRV+FDEITR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVLAIEKLLGIEVPERAQYIRVLFDEITRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S IRN KA
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNEKALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R GS+LDFI+DF RFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL MG TG
Sbjct: 183 KMNEARSGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQMGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPYE+Y+ ++FD+P+G NGD YDRYLVR+EEMRQS +I KQCI+W
Sbjct: 243 PMLRGSGIAWDLRKKQPYEVYDRMDFDVPVGVNGDCYDRYLVRVEEMRQSIRIAKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+++N+K+ P+R+ MK+NMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVMTDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL SL EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>sp|Q63VN0|NUOD_BURPS NADH-quinone oxidoreductase subunit D OS=Burkholderia pseudomallei
(strain K96243) GN=nuoD PE=3 SV=1
Length = 417
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/415 (78%), Positives = 374/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAENKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIEKLL I++P RAQYIRV+FDEITR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVLAIEKLLGIEVPERAQYIRVLFDEITRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLPE MPQYK+S IRN +A
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPEAMPQYKASKIRNERALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R GS+LDFI+DF RFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL +G TG
Sbjct: 183 KMNEARSGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQLGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PM+RGSG+ WDLRKKQPYE+Y+ L+FDIP+G NGD YDRYLVR+EEMRQS +I KQCI+W
Sbjct: 243 PMIRGSGIAWDLRKKQPYEVYDRLDFDIPVGVNGDCYDRYLVRVEEMRQSTRIAKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+K+ P+R+ MK+NMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVITDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGETYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PG+AHL +L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>sp|A3N7M0|NUOD_BURP6 NADH-quinone oxidoreductase subunit D OS=Burkholderia pseudomallei
(strain 668) GN=nuoD PE=3 SV=1
Length = 417
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/415 (78%), Positives = 374/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAENKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIEKLL I++P RAQYIRV+FDEITR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVLAIEKLLGIEVPERAQYIRVLFDEITRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLPE MPQYK+S IRN +A
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPEAMPQYKASKIRNERALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R GS+LDFI+DF RFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL +G TG
Sbjct: 183 KMNEARSGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQLGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PM+RGSG+ WDLRKKQPYE+Y+ L+FDIP+G NGD YDRYLVR+EEMRQS +I KQCI+W
Sbjct: 243 PMIRGSGIAWDLRKKQPYEVYDRLDFDIPVGVNGDCYDRYLVRVEEMRQSTRIAKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+K+ P+R+ MK+NMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVITDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGETYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PG+AHL +L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>sp|Q3JUA6|NUOD_BURP1 NADH-quinone oxidoreductase subunit D OS=Burkholderia pseudomallei
(strain 1710b) GN=nuoD PE=3 SV=1
Length = 417
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/415 (78%), Positives = 374/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAENKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIEKLL I++P RAQYIRV+FDEITR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVLAIEKLLGIEVPERAQYIRVLFDEITRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLPE MPQYK+S IRN +A
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPEAMPQYKASKIRNERALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R GS+LDFI+DF RFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL +G TG
Sbjct: 183 KMNEARSGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQLGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PM+RGSG+ WDLRKKQPYE+Y+ L+FDIP+G NGD YDRYLVR+EEMRQS +I KQCI+W
Sbjct: 243 PMIRGSGIAWDLRKKQPYEVYDRLDFDIPVGVNGDCYDRYLVRVEEMRQSTRIAKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+K+ P+R+ MK+NMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVITDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGETYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PG+AHL +L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>sp|A3NTA9|NUOD_BURP0 NADH-quinone oxidoreductase subunit D OS=Burkholderia pseudomallei
(strain 1106a) GN=nuoD PE=3 SV=1
Length = 417
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/415 (78%), Positives = 374/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAENKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIEKLL I++P RAQYIRV+FDEITR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVLAIEKLLGIEVPERAQYIRVLFDEITRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLPE MPQYK+S IRN +A
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPEAMPQYKASKIRNERALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R GS+LDFI+DF RFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL +G TG
Sbjct: 183 KMNEARSGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQLGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PM+RGSG+ WDLRKKQPYE+Y+ L+FDIP+G NGD YDRYLVR+EEMRQS +I KQCI+W
Sbjct: 243 PMIRGSGIAWDLRKKQPYEVYDRLDFDIPVGVNGDCYDRYLVRVEEMRQSTRIAKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+K+ P+R+ MK+NMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVITDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGETYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PG+AHL +L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>sp|A1V2L9|NUOD_BURMS NADH-quinone oxidoreductase subunit D OS=Burkholderia mallei
(strain SAVP1) GN=nuoD PE=3 SV=1
Length = 417
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/415 (78%), Positives = 374/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAENKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIEKLL I++P RAQYIRV+FDEITR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVLAIEKLLGIEVPERAQYIRVLFDEITRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLPE MPQYK+S IRN +A
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPEAMPQYKASKIRNERALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R GS+LDFI+DF RFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL +G TG
Sbjct: 183 KMNEARSGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQLGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PM+RGSG+ WDLRKKQPYE+Y+ L+FDIP+G NGD YDRYLVR+EEMRQS +I KQCI+W
Sbjct: 243 PMIRGSGIAWDLRKKQPYEVYDRLDFDIPVGVNGDCYDRYLVRVEEMRQSTRIAKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+K+ P+R+ MK+NMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVITDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGETYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PG+AHL +L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>sp|Q62IN8|NUOD_BURMA NADH-quinone oxidoreductase subunit D OS=Burkholderia mallei
(strain ATCC 23344) GN=nuoD PE=3 SV=1
Length = 417
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/415 (78%), Positives = 374/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAENKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIEKLL I++P RAQYIRV+FDEITR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVLAIEKLLGIEVPERAQYIRVLFDEITRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLPE MPQYK+S IRN +A
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPEAMPQYKASKIRNERALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R GS+LDFI+DF RFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL +G TG
Sbjct: 183 KMNEARSGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQLGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PM+RGSG+ WDLRKKQPYE+Y+ L+FDIP+G NGD YDRYLVR+EEMRQS +I KQCI+W
Sbjct: 243 PMIRGSGIAWDLRKKQPYEVYDRLDFDIPVGVNGDCYDRYLVRVEEMRQSTRIAKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+K+ P+R+ MK+NMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVITDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGETYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PG+AHL +L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>sp|A2S456|NUOD_BURM9 NADH-quinone oxidoreductase subunit D OS=Burkholderia mallei
(strain NCTC 10229) GN=nuoD PE=3 SV=1
Length = 417
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/415 (78%), Positives = 374/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAENKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIEKLL I++P RAQYIRV+FDEITR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVLAIEKLLGIEVPERAQYIRVLFDEITRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLPE MPQYK+S IRN +A
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPEAMPQYKASKIRNERALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R GS+LDFI+DF RFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL +G TG
Sbjct: 183 KMNEARSGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQLGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PM+RGSG+ WDLRKKQPYE+Y+ L+FDIP+G NGD YDRYLVR+EEMRQS +I KQCI+W
Sbjct: 243 PMIRGSGIAWDLRKKQPYEVYDRLDFDIPVGVNGDCYDRYLVRVEEMRQSTRIAKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+K+ P+R+ MK+NMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVITDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGETYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PG+AHL +L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>sp|A3MIA4|NUOD_BURM7 NADH-quinone oxidoreductase subunit D OS=Burkholderia mallei
(strain NCTC 10247) GN=nuoD PE=3 SV=1
Length = 417
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/415 (78%), Positives = 374/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAENKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIEKLL I++P RAQYIRV+FDEITR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVLAIEKLLGIEVPERAQYIRVLFDEITRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLPE MPQYK+S IRN +A
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPEAMPQYKASKIRNERALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R GS+LDFI+DF RFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL +G TG
Sbjct: 183 KMNEARSGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQLGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PM+RGSG+ WDLRKKQPYE+Y+ L+FDIP+G NGD YDRYLVR+EEMRQS +I KQCI+W
Sbjct: 243 PMIRGSGIAWDLRKKQPYEVYDRLDFDIPVGVNGDCYDRYLVRVEEMRQSTRIAKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+K+ P+R+ MK+NMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVITDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGETYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PG+AHL +L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>sp|Q39EE8|NUOD_BURS3 NADH-quinone oxidoreductase subunit D OS=Burkholderia sp. (strain
383) GN=nuoD PE=3 SV=1
Length = 417
Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/415 (78%), Positives = 374/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIEKLL I++P RAQYIRV+FDEITR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVLAIEKLLGIEVPERAQYIRVLFDEITRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S IRN KA
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNEKALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R GS+LDFI+DF RFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL MG TG
Sbjct: 183 KMNEARSGSVLDFIDDFFARFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQMGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPYE+Y+ ++FD+P+G NGD YDRYLVR+EEMRQS +I KQCI+W
Sbjct: 243 PMLRGSGIAWDLRKKQPYEVYDRMDFDVPVGVNGDCYDRYLVRVEEMRQSIRIAKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+++N+K+ P+R+ MK+NMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVMTDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL SL EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>sp|A4JGC7|NUOD_BURVG NADH-quinone oxidoreductase subunit D OS=Burkholderia vietnamiensis
(strain G4 / LMG 22486) GN=nuoD PE=3 SV=1
Length = 417
Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/415 (78%), Positives = 374/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAENKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIE+LL I +P RAQYIRV+FDEITR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVLAIERLLGIDVPERAQYIRVLFDEITRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQ+K+S IRN KA
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQFKASKIRNEKALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R GS+LDFI+DF RFPK IDEYETLLTDNRIWKQRLVGIGVVSPERAL MG TG
Sbjct: 183 KMNEARSGSVLDFIDDFFTRFPKCIDEYETLLTDNRIWKQRLVGIGVVSPERALQMGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPYE+Y+ ++FD+P+G NGD YDRYLVR+EEMRQS +I KQCI+W
Sbjct: 243 PMLRGSGIAWDLRKKQPYEVYDRMDFDVPVGVNGDCYDRYLVRVEEMRQSVRIAKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N+GPV+++N+K+ P+R+ MK+NMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNQGPVMTDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL SL EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>sp|Q2SZN2|NUOD_BURTA NADH-quinone oxidoreductase subunit D OS=Burkholderia thailandensis
(strain E264 / ATCC 700388 / DSM 13276 / CIP 106301)
GN=nuoD PE=3 SV=1
Length = 417
Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/415 (78%), Positives = 374/415 (90%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIEKLL I++P RAQYIRV+FDEITR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVLAIEKLLGIEVPERAQYIRVLFDEITRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLPE MPQYK+S IRN +A
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPEAMPQYKASKIRNERALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R GS+LDFI+DF RFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL +G TG
Sbjct: 183 KMNEARSGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQLGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PM+RGSG+ WDLRKKQPYE+Y+ ++FDIP+G NGD YDRYLVR+EEMRQS +I KQCI+W
Sbjct: 243 PMIRGSGIAWDLRKKQPYEVYDRIDFDIPVGVNGDCYDRYLVRVEEMRQSTRIAKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+K+ P+R+ MK+NMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRENPGPVITDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PG+AHL +L EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGYAHLSALDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>sp|B1YTQ4|NUOD_BURA4 NADH-quinone oxidoreductase subunit D OS=Burkholderia ambifaria
(strain MC40-6) GN=nuoD PE=3 SV=1
Length = 417
Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/415 (78%), Positives = 373/415 (89%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAENKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIE+LL I +P RAQYIRV+FDEITR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVLAIERLLGIDVPERAQYIRVLFDEITRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S IRN KA
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNEKALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R GS+LDFI+DF RFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL MG TG
Sbjct: 183 KMNEARSGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQMGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPYE+Y+ ++FD+P+G NGD YDRYLVR+EEMRQS +I KQCI+W
Sbjct: 243 PMLRGSGIAWDLRKKQPYEVYDRMDFDVPVGVNGDCYDRYLVRVEEMRQSIRIAKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+++N+K+ P+R+ MK+NMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVMTDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL SL EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>sp|B1JVN8|NUOD_BURCC NADH-quinone oxidoreductase subunit D OS=Burkholderia cenocepacia
(strain MC0-3) GN=nuoD PE=3 SV=1
Length = 417
Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/415 (78%), Positives = 373/415 (89%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIEKLL I++P RAQYIRV+FDEITR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVLAIEKLLGIEVPERAQYIRVLFDEITRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S IRN KA
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNEKALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R GS+LDFI+DF RFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL MG TG
Sbjct: 183 KMNEARSGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQMGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPYE+Y+ ++FD+P+G NGD YDRYLVR+EEMRQS I KQCI+W
Sbjct: 243 PMLRGSGIAWDLRKKQPYEVYDRMDFDVPVGVNGDCYDRYLVRVEEMRQSILIAKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+++N+K+ P+R+ MK+NMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVMTDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL SL EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>sp|Q0BDD3|NUOD_BURCM NADH-quinone oxidoreductase subunit D OS=Burkholderia ambifaria
(strain ATCC BAA-244 / AMMD) GN=nuoD PE=3 SV=1
Length = 417
Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/415 (78%), Positives = 373/415 (89%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++QS+PY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESKTFIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEH YV+AIE+LL I +P RAQYIRV+FDEITR+LNHLMWIG+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHGYVLAIERLLGIDVPERAQYIRVLFDEITRVLNHLMWIGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQYK+S IRN KA
Sbjct: 123 AMAVFLYAFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDAMPQYKASKIRNEKALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NE R GS+LDFI+DF RFPK +DEYETLLTDNRIWKQRLVGIGVVSPERAL MG TG
Sbjct: 183 RMNEARSGSVLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQMGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPYE+Y+ ++FD+P+G NGD YDRYLVR+EEMRQS +I KQCI+W
Sbjct: 243 PMLRGSGIAWDLRKKQPYEVYDRMDFDVPVGVNGDCYDRYLVRVEEMRQSIRIAKQCIEW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+++N+K+ P+R+ MK+NMEDLIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVMTDNHKVAPPSRVGMKTNMEDLIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL SL EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR 417
>sp|A9II07|NUOD_BORPD NADH-quinone oxidoreductase subunit D OS=Bordetella petrii (strain
ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=nuoD PE=3 SV=1
Length = 418
Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/416 (79%), Positives = 375/416 (90%), Gaps = 1/416 (0%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +TY+Q+LPY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEHKTYIQALPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIEKLL I+ P+RAQYIRVMFDEITRLLNHLM +GSH+LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEKLLGIEPPLRAQYIRVMFDEITRLLNHLMSLGSHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQY-KSSIIRNNKAT 457
AM V LYAFREREDL+DCYEAVSGARMHAAYYRPGGVYRDLP+ MPQY +SS R K
Sbjct: 123 AMAVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDTMPQYGESSKYRGEKDL 182
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
+I+N+ R GSLLDFIEDFTNRFP +DEYETLLTDNRIWKQRLVGIGVV PERA ++GFT
Sbjct: 183 RIMNDARSGSLLDFIEDFTNRFPACVDEYETLLTDNRIWKQRLVGIGVVDPERAKALGFT 242
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GPMLRGSGV WDLRK QPYE+Y+L++FD+P+G NGD YDRYLVRI EMR+SN+II+QC++
Sbjct: 243 GPMLRGSGVAWDLRKMQPYEVYDLVDFDVPVGVNGDCYDRYLVRIAEMRESNRIIRQCVE 302
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
WLR+N GPV+ N+K+ P R MK+NMEDLIHHFKLFTEGF+VP GE ++ +EHPKGEF
Sbjct: 303 WLRNNPGPVMVENHKVAPPKRTGMKTNMEDLIHHFKLFTEGFHVPPGEAFASIEHPKGEF 362
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
GIYLVSDGANKPYR+KIR+PGFAHLQSL EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 GIYLVSDGANKPYRLKIRAPGFAHLQSLDEMARGHMIADAVTIIGTQDIVFGEIDR 418
>sp|A2SFM9|NUOD_METPP NADH-quinone oxidoreductase subunit D OS=Methylibium petroleiphilum
(strain PM1) GN=nuoD PE=3 SV=1
Length = 417
Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/415 (77%), Positives = 373/415 (89%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRLILEL+GEV+++ADPHIGLLHRATEKLAE +TY+QSLPY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLILELDGEVIQRADPHIGLLHRATEKLAESKTYIQSLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAY +AIEKLL + +P+RAQYIRVMF EITR+LNHL+WIG+H LD G
Sbjct: 63 MDRLDYVSMMCNEHAYCLAIEKLLGVDVPVRAQYIRVMFSEITRILNHLLWIGAHGLDCG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +L+YAFREREDL D YEAVSGARMHAAY+RPGGVYRDLP+ MPQY+ S IRN KA
Sbjct: 123 AMNILIYAFREREDLFDMYEAVSGARMHAAYFRPGGVYRDLPDTMPQYRVSKIRNAKALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+NENRQGSLLDFIEDF RFPKN+D+YETLLTDNRIWKQR VGIGVV+PERAL++GFTG
Sbjct: 183 KMNENRQGSLLDFIEDFCRRFPKNVDDYETLLTDNRIWKQRTVGIGVVTPERALNLGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRK QPY++Y+ ++FDIP+G GD YDRYLVR+EE+RQSN+II+QC W
Sbjct: 243 PMLRGSGIAWDLRKTQPYDVYDRVDFDIPVGAGGDCYDRYLVRVEELRQSNRIIQQCAAW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPVI++N+K+ +P R++MKSNME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRANPGPVITDNHKVAAPGRVDMKSNMEELIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL ++ EM GHMI+D V +IGT DIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLAAMDEMSRGHMIADAVAVIGTMDIVFGEIDR 417
>sp|Q7VZQ2|NUOD_BORPE NADH-quinone oxidoreductase subunit D OS=Bordetella pertussis
(strain Tohama I / ATCC BAA-589 / NCTC 13251) GN=nuoD
PE=3 SV=1
Length = 418
Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/416 (78%), Positives = 374/416 (89%), Gaps = 1/416 (0%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++Q+LPY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEHKTFIQALPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIEKLL I+ P+RAQYIRVMFDEITR+LNHLM +GSH+LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEKLLGIEAPLRAQYIRVMFDEITRVLNHLMSLGSHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQY-KSSIIRNNKAT 457
AM V LYAFREREDL+DCYEAVSGARMHAAYYRPGGVYRDLP+ MPQY SS R K
Sbjct: 123 AMAVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDTMPQYGDSSKYRGEKEV 182
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
+ +N+ R GSLLDFIEDFTNRFP +DEYETLLTDNRIWKQRLVGIGVV P+RA ++GFT
Sbjct: 183 RAMNDARSGSLLDFIEDFTNRFPSCVDEYETLLTDNRIWKQRLVGIGVVDPDRAKALGFT 242
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GPMLRGSGV WDLRK QPYE+Y+L++FD+P+G NGD YDRYLVR+ EMR+SN+II+QC++
Sbjct: 243 GPMLRGSGVAWDLRKTQPYEVYDLMDFDVPVGVNGDCYDRYLVRVAEMRESNRIIRQCVE 302
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
WLR+N GPV+ N+KI P+R MKSNME+LIHHFKLF+EGF+VP GE Y+ VEHPKGEF
Sbjct: 303 WLRNNPGPVMIENHKIAPPSRTAMKSNMEELIHHFKLFSEGFHVPPGEAYAAVEHPKGEF 362
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
GIYLV+DGANKPYR+KIR+PGFAHLQSL EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 GIYLVADGANKPYRLKIRAPGFAHLQSLDEMARGHMIADAVTIIGTQDIVFGEIDR 418
>sp|Q7W5B0|NUOD_BORPA NADH-quinone oxidoreductase subunit D OS=Bordetella parapertussis
(strain 12822 / ATCC BAA-587 / NCTC 13253) GN=nuoD PE=3
SV=1
Length = 418
Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/416 (78%), Positives = 374/416 (89%), Gaps = 1/416 (0%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++Q+LPY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEHKTFIQALPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIEKLL I+ P+RAQYIRVMFDEITR+LNHLM +GSH+LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEKLLGIEAPLRAQYIRVMFDEITRVLNHLMSLGSHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQY-KSSIIRNNKAT 457
AM V LYAFREREDL+DCYEAVSGARMHAAYYRPGGVYRDLP+ MPQY SS R K
Sbjct: 123 AMAVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDTMPQYGDSSKYRGEKEV 182
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
+ +N+ R GSLLDFIEDFTNRFP +DEYETLLTDNRIWKQRLVGIGVV P+RA ++GFT
Sbjct: 183 RAMNDARSGSLLDFIEDFTNRFPGCVDEYETLLTDNRIWKQRLVGIGVVDPDRAKALGFT 242
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GPMLRGSGV WDLRK QPYE+Y+L++FD+P+G NGD YDRYLVR+ EMR+SN+II+QC++
Sbjct: 243 GPMLRGSGVAWDLRKTQPYEVYDLMDFDVPVGVNGDCYDRYLVRVAEMRESNRIIRQCVE 302
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
WLR+N GPV+ N+KI P+R MKSNME+LIHHFKLF+EGF+VP GE Y+ VEHPKGEF
Sbjct: 303 WLRNNPGPVMIENHKIAPPSRTAMKSNMEELIHHFKLFSEGFHVPPGEAYAAVEHPKGEF 362
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
GIYLV+DGANKPYR+KIR+PGFAHLQSL EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 GIYLVADGANKPYRLKIRAPGFAHLQSLDEMARGHMIADAVTIIGTQDIVFGEIDR 418
>sp|Q7WCU2|NUOD_BORBR NADH-quinone oxidoreductase subunit D OS=Bordetella bronchiseptica
(strain ATCC BAA-588 / NCTC 13252 / RB50) GN=nuoD PE=3
SV=1
Length = 418
Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/416 (78%), Positives = 374/416 (89%), Gaps = 1/416 (0%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +T++Q+LPY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEHKTFIQALPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIEKLL I+ P+RAQYIRVMFDEITR+LNHLM +GSH+LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEKLLGIEAPLRAQYIRVMFDEITRVLNHLMSLGSHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQY-KSSIIRNNKAT 457
AM V LYAFREREDL+DCYEAVSGARMHAAYYRPGGVYRDLP+ MPQY SS R K
Sbjct: 123 AMAVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDTMPQYGDSSKYRGEKEV 182
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
+ +N+ R GSLLDFIEDFTNRFP +DEYETLLTDNRIWKQRLVGIGVV P+RA ++GFT
Sbjct: 183 RAMNDARSGSLLDFIEDFTNRFPGCVDEYETLLTDNRIWKQRLVGIGVVDPDRAKALGFT 242
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GPMLRGSGV WDLRK QPYE+Y+L++FD+P+G NGD YDRYLVR+ EMR+SN+II+QC++
Sbjct: 243 GPMLRGSGVAWDLRKTQPYEVYDLMDFDVPVGVNGDCYDRYLVRVAEMRESNRIIRQCVE 302
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
WLR+N GPV+ N+KI P+R MKSNME+LIHHFKLF+EGF+VP GE Y+ VEHPKGEF
Sbjct: 303 WLRNNPGPVMIENHKIAPPSRTAMKSNMEELIHHFKLFSEGFHVPPGEAYAAVEHPKGEF 362
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
GIYLV+DGANKPYR+KIR+PGFAHLQSL EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 GIYLVADGANKPYRLKIRAPGFAHLQSLDEMARGHMIADAVTIIGTQDIVFGEIDR 418
>sp|Q0AHJ7|NUOD_NITEC NADH-quinone oxidoreductase subunit D OS=Nitrosomonas eutropha
(strain C91) GN=nuoD PE=3 SV=1
Length = 417
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/415 (76%), Positives = 373/415 (89%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I++Y +NFGPQHPAAHGVLRL++EL+GEV+R+ADPHIGLLHRATEKLAE +TY+QS+PY
Sbjct: 3 DIRNYTMNFGPQHPAAHGVLRLVMELDGEVIRRADPHIGLLHRATEKLAENKTYIQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIEKLL I +PIRAQYIRVMFDEITR+LNHL+W+G+H+LD+G
Sbjct: 63 MDRLDYVSMMVNEHAYVMAIEKLLQIDVPIRAQYIRVMFDEITRILNHLLWLGAHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LY FREREDL+DCYEAVSGAR+HAAYYRPGGVYRDLP+ MPQY+SS I + K T
Sbjct: 123 AMTVFLYTFREREDLMDCYEAVSGARLHAAYYRPGGVYRDLPDSMPQYRSSAIHDEKTTT 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
NENRQGSLLDFIEDFT+RFP +D+YETLLTDNRIWKQRLV IGVVSP+RA ++GF+G
Sbjct: 183 ARNENRQGSLLDFIEDFTHRFPGYVDDYETLLTDNRIWKQRLVDIGVVSPDRAKALGFSG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSGV WDLRKKQPYE+Y+ ++FDIP+G NGD YDRYLVRIEEMRQSN IIKQCI W
Sbjct: 243 PMLRGSGVAWDLRKKQPYEVYDQVDFDIPVGVNGDCYDRYLVRIEEMRQSNYIIKQCIDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
+R N GPVI++N K+ P R++MK NME++IHHFKLFTEG +VP GE+Y+ VEHPKGEFG
Sbjct: 303 MRKNPGPVITSNFKVAPPPRLSMKQNMEEMIHHFKLFTEGMHVPRGEVYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY++SDGAN PYR+KIR+PGFAHL ++ EM GHMI+D+V IIGTQDIVFGEIDR
Sbjct: 363 IYIISDGANMPYRLKIRAPGFAHLAAMDEMARGHMIADLVAIIGTQDIVFGEIDR 417
>sp|Q2KV09|NUOD_BORA1 NADH-quinone oxidoreductase subunit D OS=Bordetella avium (strain
197N) GN=nuoD PE=3 SV=1
Length = 418
Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/416 (77%), Positives = 374/416 (89%), Gaps = 1/416 (0%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHR TEKLAE +T++Q+LPY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAEHKTFIQALPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAYVMAIEK+L ++ P+RAQYIRVMFDEITR+LNHLM +GSH+LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYVMAIEKMLGVEAPLRAQYIRVMFDEITRILNHLMSLGSHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQY-KSSIIRNNKAT 457
AM V LYAFREREDL+DCYEAVSGARMHAAYYRPGGVYRDLP+ M QY ++S R++K
Sbjct: 123 AMAVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDTMAQYGETSKYRSDKEL 182
Query: 458 KILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFT 517
+ +N+ R GSLLDFIEDFTNRFP +DEYETLLTDNRIWKQRLVGIGVV P+RA ++GFT
Sbjct: 183 RAMNDARSGSLLDFIEDFTNRFPACVDEYETLLTDNRIWKQRLVGIGVVDPDRAKALGFT 242
Query: 518 GPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIK 577
GPMLRGSGV WDLRK QPYE+Y+L++FD+P+G NGD YDRYLVR+ E+R+SN+II+QC++
Sbjct: 243 GPMLRGSGVAWDLRKTQPYEVYDLMDFDVPVGVNGDCYDRYLVRVAELRESNRIIRQCVE 302
Query: 578 WLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEF 637
WLR+N GPV+ N+KI P R MKSNME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEF
Sbjct: 303 WLRNNPGPVMIENHKIAPPKREAMKSNMEELIHHFKLFTEGFHVPPGEAYAAVEHPKGEF 362
Query: 638 GIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
GIYLVSDGANKPYR+KIR+PGFAHLQSL EM GHMI+D VTIIGTQDIVFGEIDR
Sbjct: 363 GIYLVSDGANKPYRLKIRAPGFAHLQSLDEMSRGHMIADAVTIIGTQDIVFGEIDR 418
>sp|A1TLL9|NUOD_ACIAC NADH-quinone oxidoreductase subunit D OS=Acidovorax citrulli
(strain AAC00-1) GN=nuoD PE=3 SV=1
Length = 417
Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/415 (76%), Positives = 370/415 (89%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEVV++ADPHIGLLHRATEKLAE +T++QSLPY
Sbjct: 3 EIKNYSLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRATEKLAEHKTFIQSLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAY +AIEKLL I +P+RAQYIRVMF EITRLLNHLMW+GSH D G
Sbjct: 63 MDRLDYVSMMCNEHAYCLAIEKLLGIDVPLRAQYIRVMFSEITRLLNHLMWLGSHGNDCG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+ +L+Y FREREDL D YEAVSGARMHAAY+RPGGVYRDLP+ MPQY++S +RN KA +
Sbjct: 123 SSTILIYTFREREDLFDMYEAVSGARMHAAYFRPGGVYRDLPDSMPQYQASKVRNAKAIE 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
+LN+NRQGSLLDFI+DFT RFPK +DEYETLLTDNRIWKQR V IG+V+PERAL++G TG
Sbjct: 183 VLNQNRQGSLLDFIDDFTQRFPKCVDEYETLLTDNRIWKQRTVDIGIVTPERALNLGMTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPY+ Y+ + FDIP+GK GD YDRYLVR++EMRQSN+IIKQC+ W
Sbjct: 243 PMLRGSGIAWDLRKKQPYDAYDRVEFDIPVGKTGDCYDRYLVRVQEMRQSNRIIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L++N GPVI++N+K+ P+R +MKSNME+LIHHFKLFTEGF VP GE Y+ VEHPKGEFG
Sbjct: 303 LKANPGPVITDNHKVAPPSRESMKSNMEELIHHFKLFTEGFRVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL +L EM GHMI+D V IIGT DIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLATLDEMARGHMIADAVAIIGTMDIVFGEIDR 417
>sp|Q7NZH8|NUOD_CHRVO NADH-quinone oxidoreductase subunit D OS=Chromobacterium violaceum
(strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 /
NCIMB 9131 / NCTC 9757) GN=nuoD PE=3 SV=1
Length = 417
Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/415 (76%), Positives = 371/415 (89%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y LNFGPQHPAAHGVLRL+LEL+GEVV++ADPHIGLLHR TEKLAE +T++QSLPY
Sbjct: 3 EIRNYTLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRGTEKLAESKTFIQSLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAY +AIEK++ I++P RAQYIRVMF EITR+LNHL+WIG+H+LDIG
Sbjct: 63 MDRLDYVSMMCNEHAYCLAIEKMMGIEVPERAQYIRVMFAEITRILNHLLWIGAHALDIG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM + LYAFREREDL+DCYEAVSGARMHAAY+RPGGVYRDLP+ MPQY S I+N K
Sbjct: 123 AMTMFLYAFREREDLMDCYEAVSGARMHAAYFRPGGVYRDLPDSMPQYTVSKIKNAKELA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNE R+GS+LDFIEDFT RFP +DEYETLLTDNRIWKQR VGIGVV+PERAL++G TG
Sbjct: 183 RLNEGRKGSMLDFIEDFTKRFPTYVDEYETLLTDNRIWKQRTVGIGVVTPERALNLGMTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRK QPY++Y+ ++FD+P+G GD YDRYLVR+EEMRQSN+II+QC+ W
Sbjct: 243 PMLRGSGIAWDLRKTQPYDVYDKMDFDVPVGVGGDCYDRYLVRVEEMRQSNRIIQQCVAW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPVI++N+K+ P+R MKSNMEDLIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 303 LRANPGPVITDNHKVAPPSREGMKSNMEDLIHHFKLFTEGMHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PG+AHL +L EM +GHMI+DVV IIGTQDIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGYAHLAALDEMATGHMIADVVAIIGTQDIVFGEIDR 417
>sp|A4SXQ0|NUOD_POLSQ NADH-quinone oxidoreductase subunit D OS=Polynucleobacter
necessarius subsp. asymbioticus (strain DSM 18221 / CIP
109841 / QLW-P1DMWA-1) GN=nuoD PE=3 SV=1
Length = 417
Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/417 (75%), Positives = 371/417 (88%)
Query: 277 VIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSL 336
+ +IK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE RT++Q++
Sbjct: 1 MTKIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAETRTWIQNV 60
Query: 337 PYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLD 396
PYMDRLDYVSMM NEHAYV+AIEKLL + +P+RAQYIRVMFDE+TRLLNHL+WIG H LD
Sbjct: 61 PYMDRLDYVSMMSNEHAYVLAIEKLLQVDVPLRAQYIRVMFDELTRLLNHLLWIGCHGLD 120
Query: 397 IGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKA 456
+GAM V LYAFR+RED+ D YEAVSGARMHAAYYRPGGVYRDLP+ M QY S IR+ A
Sbjct: 121 VGAMAVFLYAFRDREDIFDMYEAVSGARMHAAYYRPGGVYRDLPDQMAQYSKSKIRSASA 180
Query: 457 TKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGF 516
K LNENR G+LLDFI+ FTN F N+DEY LLTDNRIWKQRLV IG+V+PERAL +GF
Sbjct: 181 IKRLNENRSGTLLDFIDQFTNGFDANVDEYCNLLTDNRIWKQRLVNIGIVTPERALQLGF 240
Query: 517 TGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCI 576
TGPMLRGSG++WDLRKKQPYE+Y+ L+FDIP+G NGDSYDRYLVR+EEMRQSN+IIKQC+
Sbjct: 241 TGPMLRGSGIEWDLRKKQPYEVYDRLDFDIPVGVNGDSYDRYLVRMEEMRQSNRIIKQCV 300
Query: 577 KWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
WL++N GPV+S+N+K++ P R++MK+NME+LIHHFKLFTEG +VP GE YS VEHPKGE
Sbjct: 301 AWLKANSGPVMSDNHKVSPPKRVDMKTNMEELIHHFKLFTEGMHVPNGEAYSAVEHPKGE 360
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
FGIYL+SDGANKPYR+KIR+PGF HL ++ EM GHM++D VTIIGTQDIVFGEIDR
Sbjct: 361 FGIYLISDGANKPYRMKIRAPGFVHLSAMDEMSRGHMLADAVTIIGTQDIVFGEIDR 417
>sp|A1VM63|NUOD_POLNA NADH-quinone oxidoreductase subunit D OS=Polaromonas
naphthalenivorans (strain CJ2) GN=nuoD PE=3 SV=1
Length = 417
Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/415 (76%), Positives = 364/415 (87%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +TY+QSLPY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESKTYIQSLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAY +AIEKLL + +PIRAQYIRVMF EITRLLNHLMW+G+H LD G
Sbjct: 63 MDRLDYVSMMSNEHAYCLAIEKLLGVDVPIRAQYIRVMFSEITRLLNHLMWLGAHGLDCG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +L+Y FRERE L D YEAVSGARMHAAY+RPGGVYRDLPE M QYK + IRN KA
Sbjct: 123 AMNMLIYCFREREVLFDMYEAVSGARMHAAYFRPGGVYRDLPESMSQYKVNKIRNAKAID 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNENRQGSLLDFI+DF +FPK +DEYETLLTDNRIWKQR VG+GVVSPERAL++GFTG
Sbjct: 183 ALNENRQGSLLDFIDDFVTKFPKLVDEYETLLTDNRIWKQRTVGVGVVSPERALNLGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG WDLRK+QPYE+Y ++FDIP+GK GD YDRYLVR+ EMRQSN+IIKQC+ W
Sbjct: 243 PMLRGSGFAWDLRKQQPYEVYAQMDFDIPVGKTGDCYDRYLVRVAEMRQSNRIIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+K+ P R +MKSNME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRVNSGPVITSNHKVAPPNRESMKSNMEELIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY+VSDGANKPYR+KIR PGF+HL ++ EM GHMI+D V +IGT DIVFGEIDR
Sbjct: 363 IYIVSDGANKPYRLKIRPPGFSHLAAMDEMSRGHMIADAVAVIGTMDIVFGEIDR 417
>sp|B1Y830|NUOD_LEPCP NADH-quinone oxidoreductase subunit D OS=Leptothrix cholodnii
(strain ATCC 51168 / LMG 8142 / SP-6) GN=nuoD PE=3 SV=1
Length = 417
Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/415 (75%), Positives = 368/415 (88%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHR TEKLAE +T++QSLPY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRGTEKLAESKTFIQSLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAY +AIEKL+ I++P RAQYIRVMF EITRLLNHL+W+G H +D G
Sbjct: 63 MDRLDYVSMMCNEHAYCLAIEKLMGIQVPERAQYIRVMFSEITRLLNHLLWLGCHGMDCG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +L+Y FREREDL D YEAVSGARMHAAY+RPGGVYRDLP++MPQYK S IRN KA
Sbjct: 123 AMNMLIYCFREREDLFDMYEAVSGARMHAAYFRPGGVYRDLPDVMPQYKVSKIRNAKAMA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNENRQGSLLDFI+DFT RFP +DEYETLLTDNRIWKQR VGIGV++PERAL++G TG
Sbjct: 183 RLNENRQGSLLDFIDDFTKRFPTLVDEYETLLTDNRIWKQRTVGIGVLTPERALNLGLTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
M+RGSG+ WDLRK QPY++Y+ ++FDIP+G NGD+YDRYLVR+EEMRQSN+II+QC W
Sbjct: 243 AMIRGSGIAWDLRKTQPYDVYDRMDFDIPVGVNGDTYDRYLVRVEEMRQSNRIIEQCSAW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPVI++N+K+ P+R+ MK++ME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRANPGPVITDNHKVAPPSRVEMKTSMEELIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY +SDGANKPYR+KIR+PGFAHL +L EM GHMI+D V IIGT DIVFGEIDR
Sbjct: 363 IYAISDGANKPYRLKIRAPGFAHLAALDEMSRGHMIADAVAIIGTMDIVFGEIDR 417
>sp|B1XUK1|NUOD_POLNS NADH-quinone oxidoreductase subunit D OS=Polynucleobacter
necessarius subsp. necessarius (strain STIR1) GN=nuoD
PE=3 SV=1
Length = 417
Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/415 (75%), Positives = 367/415 (88%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+IK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLA+ RT++Q++PY
Sbjct: 3 QIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAKTRTWIQNIPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NEHAYVMAIEKLL + +P+RAQYIRVM+DE+TRLLNHL+WIG H LD+G
Sbjct: 63 MDRLDYVSMMSNEHAYVMAIEKLLQVDVPLRAQYIRVMYDELTRLLNHLLWIGCHGLDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V LYAFR+RED+ D YEAVSGARMHAAYYRPGGVYRDLP+ M QY S IR+ A K
Sbjct: 123 AMAVFLYAFRDREDIFDMYEAVSGARMHAAYYRPGGVYRDLPDQMAQYDKSKIRSASAVK 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNENR G+LLDFIE F N F N+DEY LLTDNRIWKQRLV IG+V+P+RAL +GFTG
Sbjct: 183 RLNENRSGTLLDFIEQFANGFDANVDEYCNLLTDNRIWKQRLVNIGIVTPKRALQLGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG++WDLRKKQPYE+Y+ L+FDIP+G NGDSYDRYLVR+EEMRQSN IIKQC+ W
Sbjct: 243 PMLRGSGIEWDLRKKQPYEVYDRLDFDIPVGVNGDSYDRYLVRMEEMRQSNHIIKQCVAW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
L++N GPV+S N+K++ P R++MK+NME+LIHHFKLFTEG +VP GE YS VEHPKGEFG
Sbjct: 303 LKANPGPVMSTNHKVSPPKRVDMKTNMEELIHHFKLFTEGIHVPDGEAYSAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYL+SDGANKPYR+KIR+PGF HL S+ EM GHM++D VTIIGTQDIVFGEIDR
Sbjct: 363 IYLISDGANKPYRMKIRAPGFVHLSSMDEMSRGHMLADAVTIIGTQDIVFGEIDR 417
>sp|A1WLP1|NUOD_VEREI NADH-quinone oxidoreductase subunit D OS=Verminephrobacter eiseniae
(strain EF01-2) GN=nuoD PE=3 SV=1
Length = 417
Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/415 (74%), Positives = 366/415 (88%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEVV++ADPHIGLLHRATEKLAE +TY+QSLPY
Sbjct: 3 EIKNYCLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRATEKLAEHKTYIQSLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAY +A+EKLL + +P+RAQYIRV+F EITRLLNHLMW+GSH+ D G
Sbjct: 63 MDRLDYVSMMCNEHAYCLALEKLLGLPVPLRAQYIRVLFAEITRLLNHLMWLGSHANDCG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+ +L+Y FREREDL D YEAVSGARMHAAY+RPGGVYRDLP+ MP+Y++S IRN +A
Sbjct: 123 SSTMLMYTFREREDLFDMYEAVSGARMHAAYFRPGGVYRDLPDSMPRYQASKIRNARALA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN+NRQGSLLDFI DF RFP +DEYETLLTDNRIWKQR VGIGVVSP+RAL++G TG
Sbjct: 183 ALNQNRQGSLLDFIADFAQRFPGCVDEYETLLTDNRIWKQRTVGIGVVSPQRALNLGMTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRK QPY++Y ++FD+P+GK GD YDRYLVR++EMR++N+II QC+ W
Sbjct: 243 PMLRGSGIAWDLRKTQPYDVYEHMDFDVPVGKTGDCYDRYLVRVQEMREANRIIGQCVAW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPVI++N+K+ +P R MKSNME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRANPGPVITDNHKVAAPGRAAMKSNMEELIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IYLVSDGANKPYR+KIR+PGFAHL +L EM GHMI+D V IIGT DIVFGEIDR
Sbjct: 363 IYLVSDGANKPYRLKIRAPGFAHLATLDEMARGHMIADAVAIIGTMDIVFGEIDR 417
>sp|Q127X5|NUOD_POLSJ NADH-quinone oxidoreductase subunit D OS=Polaromonas sp. (strain
JS666 / ATCC BAA-500) GN=nuoD PE=3 SV=1
Length = 417
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/415 (75%), Positives = 365/415 (87%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEV+++ADPHIGLLHRATEKLAE +TY+QSLPY
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESKTYIQSLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMM NE AY +AIEKLL + +PIRAQYIRVM+ EITRLLNHL+W+G+H D G
Sbjct: 63 MDRLDYVSMMSNEQAYCLAIEKLLGVDVPIRAQYIRVMYAEITRLLNHLLWLGAHGFDCG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM +L+Y FRERE L D YEAVSGARMHAAY+RPGGVYRDLP+ MPQY+ S I+N KA
Sbjct: 123 AMNILIYCFREREALFDMYEAVSGARMHAAYFRPGGVYRDLPDTMPQYRVSKIKNAKAIA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LNENRQGSLLDFI+DF +FP+ +DEYETLLTDNRIWKQR VG+GVVSPERAL++GFTG
Sbjct: 183 ALNENRQGSLLDFIDDFVAKFPRLVDEYETLLTDNRIWKQRTVGVGVVSPERALNLGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG WDLRK+QPY++Y+ ++FDIP+GK GD YDRYLVRIEEMRQSN+IIKQCI W
Sbjct: 243 PMLRGSGFAWDLRKQQPYDVYDRMDFDIPVGKTGDCYDRYLVRIEEMRQSNRIIKQCIDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++N+K+ +P R +MK+NME+LIHHFKLFTEGF+VP GE Y+ VEHPKGEFG
Sbjct: 303 LRVNPGPVITSNHKVAAPDRESMKTNMEELIHHFKLFTEGFHVPEGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY+VSDGANKPYR+KIR PGF HL ++ EM GHMI+D V +IGT DIVFGEIDR
Sbjct: 363 IYIVSDGANKPYRLKIRPPGFPHLAAMDEMSRGHMIADAVAVIGTMDIVFGEIDR 417
>sp|A1W4M5|NUOD_ACISJ NADH-quinone oxidoreductase subunit D OS=Acidovorax sp. (strain
JS42) GN=nuoD PE=3 SV=1
Length = 417
Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/415 (75%), Positives = 364/415 (87%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EIK+Y LNFGPQHPAAHGVLRL+LEL+GEVV++ADPHIGLLHRATEKLAE +TY+QSLPY
Sbjct: 3 EIKNYSLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRATEKLAEHKTYIQSLPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNE AY +AIEK+L I++P+RA+YIR MF EITRLLNHLMW+GSH D G
Sbjct: 63 MDRLDYVSMMCNEQAYCLAIEKMLGIEVPLRAKYIRTMFGEITRLLNHLMWLGSHGNDCG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
+ +L+Y FREREDL D YEAVSGARMHAAY+RPGGVYRDLP+ M QYK S I+N KA +
Sbjct: 123 SSTILIYTFREREDLFDMYEAVSGARMHAAYFRPGGVYRDLPDSMAQYKVSKIKNAKAIE 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
LN NRQGSLLDFI+DFT RFPK +DEYETLLTDNRIWKQR VGIGVV ERAL++G TG
Sbjct: 183 ELNRNRQGSLLDFIDDFTQRFPKCVDEYETLLTDNRIWKQRTVGIGVVPAERALNLGMTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG+ WDLRKKQPY+ Y+ ++FD+P+G GDSYDRYLVR++EMR+SN+IIKQC+ W
Sbjct: 243 PMLRGSGIAWDLRKKQPYDAYDRVDFDVPVGVTGDSYDRYLVRVQEMRESNRIIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR+N GPVI++N+KI P+R MKSNME+LIHHFKLFTEGF VP GE Y+ VEHPKGEFG
Sbjct: 303 LRANPGPVITDNHKIAPPSREAMKSNMEELIHHFKLFTEGFRVPAGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY+VSDGANKPYR+KIR+PGFAHL +L EM GHM++D V IIGT DIVFGEIDR
Sbjct: 363 IYMVSDGANKPYRLKIRAPGFAHLATLDEMARGHMLADAVAIIGTMDIVFGEIDR 417
>sp|Q47HH3|NUOD_DECAR NADH-quinone oxidoreductase subunit D OS=Dechloromonas aromatica
(strain RCB) GN=nuoD PE=3 SV=1
Length = 417
Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/415 (75%), Positives = 358/415 (86%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
+I+++ LNFGPQHPAAHGVLRL+LEL+GEVV++ADPHIGLLHRATEKLAE RT++QS+PY
Sbjct: 3 DIRNFTLNFGPQHPAAHGVLRLVLELDGEVVQRADPHIGLLHRATEKLAETRTWVQSVPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSMMCNEHAY +A EKLL I++P R +YIRVMFDE+TR+LNHL+WIG H+LD+G
Sbjct: 63 MDRLDYVSMMCNEHAYCLATEKLLGIEVPERGKYIRVMFDEVTRILNHLLWIGCHALDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM + LY FREREDL+D YEAVSGARMHAAYYRPGGVYRDLP+ MPQY+ S N K
Sbjct: 123 AMTMALYTFREREDLMDVYEAVSGARMHAAYYRPGGVYRDLPDRMPQYQESTWTNAKKAA 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
NENR GS+LDF+EDFTNRFP EY TLLTDNRIWKQRLV +GVV+PERAL MGFTG
Sbjct: 183 EKNENRSGSVLDFLEDFTNRFPTYHSEYHTLLTDNRIWKQRLVNVGVVTPERALQMGFTG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
MLRGSG+ WDLRKKQPY Y+ +NFD+P+G NGDSYDRYLVR+EEM QSN IIKQCI W
Sbjct: 243 AMLRGSGIAWDLRKKQPYAAYDKINFDVPVGVNGDSYDRYLVRMEEMIQSNNIIKQCIAW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPVI++NNK+ P R NMK+NME+LIHHFKLFTEG +VP GE Y+ VEHPKGEFG
Sbjct: 303 LRKNPGPVITDNNKVAPPPRENMKTNMEELIHHFKLFTEGIHVPAGEAYAAVEHPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
IY VSDGANKPYR+KIR+PGF HL L EM GHMI+DVVTIIG+QDIVFGEIDR
Sbjct: 363 IYFVSDGANKPYRMKIRAPGFVHLAGLDEMSRGHMIADVVTIIGSQDIVFGEIDR 417
>sp|Q0A778|NUOD_ALHEH NADH-quinone oxidoreductase subunit D OS=Alkalilimnicola ehrlichei
(strain MLHE-1) GN=nuoD PE=3 SV=1
Length = 417
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/415 (73%), Positives = 361/415 (86%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
E KSY +NFGPQHPAAHGVLR++LE+EGE VR+ADPHIGLLHRATEKLAE + Y QS+ Y
Sbjct: 3 EFKSYTVNFGPQHPAAHGVLRMVLEMEGETVRRADPHIGLLHRATEKLAESKPYNQSIGY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
MDRLDYVSM+CNEHAYVMAIEKLL I+ PIRAQYIRVMFDEITR+LNHLMW+G+H LD+G
Sbjct: 63 MDRLDYVSMLCNEHAYVMAIEKLLGIEAPIRAQYIRVMFDEITRILNHLMWLGAHGLDVG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM LY FREREDL+DCYEAVSGARMHAAYYRPGGVYRDLPE MP+Y+ S R+ K +
Sbjct: 123 AMTAFLYCFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPESMPKYEPSKFRSKKELE 182
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
++N RQG++LDFIEDFT RFP +DEYETLLT+NRIW+QRLV +GVVSPERAL +GF+G
Sbjct: 183 LMNAARQGTMLDFIEDFTERFPGCVDEYETLLTENRIWRQRLVDVGVVSPERALQLGFSG 242
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLRGSG++WDLRKKQPY++Y+ + FDIP+G NGD YDRYLVRIEEMRQSN+IIKQC+ W
Sbjct: 243 PMLRGSGIEWDLRKKQPYDVYDRVEFDIPVGTNGDCYDRYLVRIEEMRQSNRIIKQCVDW 302
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR N GPV+ ++K+ P+R MK +ME LIHHFKLFTEG+ P GE+Y+ VE PKGEFG
Sbjct: 303 LRHNPGPVMLEDHKVAPPSREEMKDDMESLIHHFKLFTEGYTTPPGEVYAAVEAPKGEFG 362
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
Y++SDGANKPYR+K+R+PGFAHL ++ EM GHM++DVV IIGTQDIVFGEIDR
Sbjct: 363 CYMISDGANKPYRVKLRAPGFAHLSAMDEMARGHMLADVVAIIGTQDIVFGEIDR 417
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.141 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 279,224,158
Number of Sequences: 539616
Number of extensions: 12693148
Number of successful extensions: 32287
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1732
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 28152
Number of HSP's gapped (non-prelim): 2131
length of query: 693
length of database: 191,569,459
effective HSP length: 125
effective length of query: 568
effective length of database: 124,117,459
effective search space: 70498716712
effective search space used: 70498716712
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 65 (29.6 bits)