Query psy5227
Match_columns 693
No_of_seqs 492 out of 3149
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 20:55:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5227.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5227hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13292 trifunctional NADH de 100.0 6E-153 1E-157 1315.7 57.0 633 26-693 12-788 (788)
2 PRK11742 bifunctional NADH:ubi 100.0 9E-122 2E-126 1038.0 49.1 509 152-693 32-575 (575)
3 COG0649 NuoD NADH:ubiquinone o 100.0 1.4E-99 3E-104 786.5 34.4 386 281-693 13-398 (398)
4 PRK06075 NADH dehydrogenase su 100.0 2.8E-95 6E-100 790.7 38.6 386 281-693 5-392 (392)
5 CHL00017 ndhH NADH dehydrogena 100.0 2.8E-94 6.1E-99 779.3 38.6 388 277-693 5-393 (393)
6 TIGR01962 NuoD NADH dehydrogen 100.0 4.7E-94 1E-98 780.5 38.9 385 282-693 2-386 (386)
7 PRK12322 NADH dehydrogenase su 100.0 3.7E-93 8.1E-98 765.9 37.2 361 281-693 5-366 (366)
8 PRK07415 NAD(P)H-quinone oxido 100.0 9E-93 1.9E-97 767.8 38.6 381 281-693 9-394 (394)
9 COG3261 HycE Ni,Fe-hydrogenase 100.0 3.2E-90 7E-95 715.0 32.6 362 279-693 5-367 (382)
10 KOG2870|consensus 100.0 3E-87 6.5E-92 670.1 27.4 401 266-693 48-452 (452)
11 TIGR03295 frhA coenzyme F420 h 100.0 2.4E-67 5.1E-72 578.6 28.2 351 285-693 5-393 (411)
12 PF00346 Complex1_49kDa: Respi 100.0 1.1E-62 2.3E-67 509.2 16.4 271 396-693 1-272 (272)
13 PRK10467 hydrogenase 2 large s 100.0 4.2E-52 9E-57 466.0 29.0 366 285-692 5-551 (567)
14 COG3259 FrhA Coenzyme F420-red 100.0 4.9E-51 1.1E-55 430.1 27.9 347 294-691 13-422 (441)
15 PRK10170 hydrogenase 1 large s 100.0 1.8E-50 3.8E-55 453.7 29.4 371 284-691 18-580 (597)
16 COG0374 HyaB Ni,Fe-hydrogenase 100.0 6.6E-47 1.4E-51 406.7 28.1 354 294-691 12-528 (545)
17 PF00374 NiFeSe_Hases: Nickel- 100.0 4.2E-47 9.2E-52 424.3 23.0 332 321-691 1-505 (507)
18 PRK14818 NADH dehydrogenase su 100.0 3.1E-41 6.8E-46 317.1 11.0 138 27-164 22-159 (173)
19 COG0377 NuoB NADH:ubiquinone o 100.0 2.4E-40 5.2E-45 309.9 9.3 138 26-163 26-163 (194)
20 PRK14813 NADH dehydrogenase su 100.0 1.1E-39 2.4E-44 311.9 10.5 137 27-163 19-156 (189)
21 COG3260 Ni,Fe-hydrogenase III 100.0 1.1E-39 2.3E-44 291.3 7.5 129 35-163 6-137 (148)
22 CHL00023 ndhK NADH dehydrogena 100.0 3.2E-39 7E-44 314.8 11.0 138 26-163 22-160 (225)
23 TIGR01957 nuoB_fam NADH-quinon 100.0 2.3E-39 5E-44 301.4 9.5 136 27-162 8-144 (145)
24 KOG1687|consensus 100.0 2.5E-39 5.5E-44 286.8 8.6 145 24-168 20-164 (168)
25 PRK14816 NADH dehydrogenase su 100.0 4.8E-39 1E-43 306.4 10.5 139 26-164 31-170 (182)
26 PRK06411 NADH dehydrogenase su 100.0 4.7E-39 1E-43 308.8 10.2 143 21-163 19-162 (183)
27 PRK14817 NADH dehydrogenase su 100.0 1.3E-38 2.7E-43 303.3 10.6 138 26-164 25-163 (181)
28 PRK14815 NADH dehydrogenase su 100.0 2.9E-38 6.2E-43 300.8 10.0 137 27-164 24-161 (183)
29 PRK14820 NADH dehydrogenase su 100.0 2.1E-37 4.6E-42 295.7 10.1 136 27-163 24-160 (180)
30 PRK14814 NADH dehydrogenase su 100.0 2.5E-37 5.5E-42 296.1 10.0 137 26-163 23-160 (186)
31 PRK14819 NADH dehydrogenase su 100.0 3.7E-37 8.1E-42 304.4 10.0 134 27-160 22-156 (264)
32 COG0852 NuoC NADH:ubiquinone o 100.0 1.5E-32 3.2E-37 264.6 8.6 113 153-280 40-152 (176)
33 CHL00012 ndhJ NADH dehydrogena 100.0 3.8E-31 8.3E-36 248.5 9.3 121 144-284 31-155 (158)
34 PRK07735 NADH dehydrogenase su 100.0 2.7E-31 5.9E-36 278.7 9.1 111 152-277 315-425 (430)
35 PRK07785 NADH dehydrogenase su 100.0 8.3E-31 1.8E-35 261.3 9.8 117 152-279 99-215 (235)
36 TIGR01961 NuoC_fam NADH (or F4 99.9 6.3E-28 1.4E-32 222.2 9.4 113 152-279 9-121 (121)
37 PRK06074 NADH dehydrogenase su 99.9 1.1E-27 2.3E-32 235.9 9.6 115 152-279 37-151 (189)
38 PRK08491 NADH dehydrogenase su 99.9 1.4E-27 3.1E-32 242.2 9.4 111 153-279 68-178 (263)
39 PF00329 Complex1_30kDa: Respi 99.9 1.7E-27 3.7E-32 212.9 6.9 102 156-273 2-103 (103)
40 PRK12494 NADH dehydrogenase su 99.9 7.4E-27 1.6E-31 225.9 9.8 121 144-284 45-169 (172)
41 PF01058 Oxidored_q6: NADH ubi 99.9 1.1E-27 2.4E-32 223.2 1.6 112 45-156 1-131 (131)
42 TIGR03294 FrhG coenzyme F420 h 99.9 4.5E-26 9.7E-31 231.5 8.9 124 35-158 2-142 (228)
43 KOG1713|consensus 99.9 1.4E-26 3.1E-31 212.1 3.0 112 155-279 41-152 (191)
44 PRK10468 hydrogenase 2 small s 99.9 1.6E-23 3.5E-28 221.2 10.2 128 32-159 46-208 (371)
45 TIGR00391 hydA hydrogenase (Ni 99.9 1E-22 2.3E-27 215.4 10.2 128 32-159 48-210 (365)
46 COG1941 FrhG Coenzyme F420-red 99.9 2.9E-22 6.3E-27 197.2 6.6 114 40-156 9-150 (247)
47 COG1740 HyaA Ni,Fe-hydrogenase 99.8 1.4E-20 3.1E-25 192.7 9.0 129 31-159 45-208 (355)
48 COG3262 HycE Ni,Fe-hydrogenase 99.8 1.2E-18 2.5E-23 160.4 8.1 108 153-276 41-152 (165)
49 KOG4662|consensus 98.6 9E-09 2E-13 91.0 -0.8 40 4-43 30-69 (122)
50 MTH00092 ND3 NADH dehydrogenas 98.4 5.7E-08 1.2E-12 87.9 -0.3 42 2-43 22-63 (111)
51 CHL00022 ndhC NADH dehydrogena 98.3 1.2E-07 2.6E-12 86.9 -0.3 42 2-43 28-69 (120)
52 MTH00136 ND3 NADH dehydrogenas 98.2 1.8E-07 3.9E-12 85.4 -0.3 42 2-43 22-63 (116)
53 PRK06602 NADH:ubiquinone oxido 98.2 1.9E-07 4.2E-12 85.8 -0.6 42 2-43 29-70 (121)
54 MTH00042 ND3 NADH dehydrogenas 98.2 2.1E-07 4.6E-12 84.9 -0.4 42 2-43 22-63 (116)
55 MTH00106 ND3 NADH dehydrogenas 98.2 2.2E-07 4.9E-12 84.6 -0.4 42 2-43 21-62 (115)
56 MTH00069 ND3 NADH dehydrogenas 98.2 2.1E-07 4.6E-12 84.6 -0.5 42 2-43 20-61 (114)
57 MTH00018 ND3 NADH dehydrogenas 98.2 2.2E-07 4.8E-12 84.4 -0.8 42 2-43 21-62 (113)
58 COG0838 NuoA NADH:ubiquinone o 98.2 2.4E-07 5.2E-12 84.4 -0.6 42 2-43 29-70 (123)
59 PRK07928 NADH dehydrogenase su 98.2 2.8E-07 6.2E-12 84.3 -0.3 42 2-43 25-68 (119)
60 MTH00113 ND3 NADH dehydrogenas 98.2 2.5E-07 5.5E-12 84.2 -0.7 42 2-43 21-62 (114)
61 MTH00202 ND3 NADH dehydrogenas 98.2 2.7E-07 5.9E-12 84.3 -0.6 42 2-43 22-64 (117)
62 PRK06073 NADH dehydrogenase su 98.2 3E-07 6.4E-12 84.4 -0.3 42 2-43 28-69 (124)
63 PRK07756 NADH dehydrogenase su 98.2 3.4E-07 7.3E-12 84.3 -0.6 42 2-43 30-71 (122)
64 MTH00148 ND3 NADH dehydrogenas 98.1 3.6E-07 7.9E-12 83.5 -0.4 42 2-43 22-64 (117)
65 MTH00055 ND3 NADH dehydrogenas 98.1 3.2E-07 7E-12 83.9 -0.9 42 2-43 26-67 (118)
66 MTH00203 ND3 NADH dehydrogenas 98.1 4.1E-07 8.9E-12 82.5 -0.8 41 3-43 23-63 (112)
67 MTH00161 ND3 NADH dehydrogenas 98.1 6.1E-07 1.3E-11 81.6 -0.5 42 2-43 20-62 (113)
68 MTH00012 ND3 NADH dehydrogenas 98.1 7E-07 1.5E-11 81.6 -0.5 41 3-43 23-64 (117)
69 MTH00030 ND3 NADH dehydrogenas 98.0 7.7E-07 1.7E-11 81.6 -0.6 42 2-43 26-72 (123)
70 PRK08489 NADH dehydrogenase su 97.8 4.5E-06 9.7E-11 77.3 0.4 39 4-43 37-75 (129)
71 PF00507 Oxidored_q4: NADH-ubi 97.7 7.4E-07 1.6E-11 79.6 -7.0 42 2-43 10-52 (102)
72 PRK06432 NADH dehydrogenase su 97.6 1.9E-05 4.2E-10 73.4 0.9 33 11-43 60-92 (144)
73 MTH00060 ND3 NADH dehydrogenas 97.6 1.7E-05 3.7E-10 71.9 0.6 35 9-43 32-66 (116)
74 PF00919 UPF0004: Uncharacteri 78.4 2.3 5E-05 37.6 3.4 67 47-114 8-79 (98)
75 TIGR01125 MiaB-like tRNA modif 61.6 4.4 9.6E-05 45.6 1.8 74 38-115 2-77 (430)
76 cd00886 MogA_MoaB MogA_MoaB fa 59.0 13 0.00028 35.4 4.3 25 137-161 125-149 (152)
77 TIGR00089 RNA modification enz 49.4 9.3 0.0002 43.0 1.8 73 39-115 3-80 (429)
78 PRK14330 (dimethylallyl)adenos 46.8 13 0.00029 41.8 2.5 75 38-115 3-82 (434)
79 PRK14334 (dimethylallyl)adenos 43.2 17 0.00038 41.0 2.8 74 38-114 3-81 (440)
80 PRK14332 (dimethylallyl)adenos 42.6 17 0.00038 41.1 2.6 78 35-115 10-93 (449)
81 PRK14326 (dimethylallyl)adenos 41.1 22 0.00047 41.0 3.1 77 36-115 14-96 (502)
82 PRK14336 (dimethylallyl)adenos 41.0 17 0.00038 40.7 2.3 75 38-115 4-84 (418)
83 PRK14335 (dimethylallyl)adenos 40.6 20 0.00043 40.7 2.7 75 38-115 3-82 (455)
84 TIGR01579 MiaB-like-C MiaB-lik 40.5 16 0.00035 40.8 1.9 67 47-115 5-76 (414)
85 PRK14331 (dimethylallyl)adenos 38.7 17 0.00036 41.1 1.7 75 38-115 3-83 (437)
86 KOG1748|consensus 38.5 21 0.00046 33.2 2.0 36 352-387 91-127 (131)
87 PRK14329 (dimethylallyl)adenos 37.9 23 0.00049 40.4 2.6 77 36-115 24-106 (467)
88 PRK14862 rimO ribosomal protei 37.2 26 0.00056 39.6 2.9 42 38-82 10-51 (440)
89 PRK14325 (dimethylallyl)adenos 36.4 22 0.00048 40.2 2.2 75 38-115 6-86 (444)
90 TIGR01578 MiaB-like-B MiaB-lik 35.2 17 0.00037 40.8 1.1 71 39-114 3-76 (420)
91 TIGR01574 miaB-methiolase tRNA 34.2 32 0.00069 38.8 3.0 75 38-115 2-83 (438)
92 PRK14328 (dimethylallyl)adenos 30.3 33 0.00071 38.7 2.3 75 38-115 4-84 (439)
93 PRK14333 (dimethylallyl)adenos 28.8 38 0.00082 38.4 2.5 76 37-115 8-89 (448)
94 TIGR00177 molyb_syn molybdenum 28.1 53 0.0011 30.9 2.9 25 74-98 65-89 (144)
95 COG3976 Uncharacterized protei 26.2 1.5E+02 0.0033 27.4 5.3 68 295-363 61-131 (135)
96 PRK14327 (dimethylallyl)adenos 26.1 49 0.0011 38.2 2.8 78 34-114 65-148 (509)
97 PRK14340 (dimethylallyl)adenos 25.6 40 0.00086 38.2 1.9 75 38-115 9-89 (445)
98 PF07091 FmrO: Ribosomal RNA m 24.4 27 0.00058 36.3 0.2 103 12-116 106-215 (251)
99 PRK14338 (dimethylallyl)adenos 23.9 49 0.0011 37.6 2.2 75 38-115 23-103 (459)
100 KOG2990|consensus 23.6 64 0.0014 33.8 2.7 54 29-89 44-119 (317)
101 PF13278 DUF4066: Putative ami 23.5 1.5E+02 0.0033 28.1 5.3 39 73-111 59-101 (166)
102 PRK12449 acyl carrier protein; 22.9 1.1E+02 0.0024 25.3 3.7 43 343-386 35-78 (80)
103 PRK09271 flavodoxin; Provision 21.9 1.5E+02 0.0033 28.2 5.0 90 75-165 51-152 (160)
104 PRK07117 acyl carrier protein; 21.0 88 0.0019 26.5 2.6 44 343-387 35-79 (79)
105 KOG3210|consensus 20.9 75 0.0016 30.9 2.4 40 74-114 55-100 (226)
106 cd00758 MoCF_BD MoCF_BD: molyb 20.7 97 0.0021 28.6 3.2 24 75-98 58-81 (133)
107 TIGR01113 mtrE N5-methyltetrah 20.3 87 0.0019 32.3 2.8 40 310-357 34-73 (283)
No 1
>PRK13292 trifunctional NADH dehydrogenase I subunit B/C/D; Provisional
Probab=100.00 E-value=6.2e-153 Score=1315.74 Aligned_cols=633 Identities=46% Similarity=0.863 Sum_probs=592.8
Q ss_pred ccccccccccccccccCCCCCchHHHHHhhcCCccccccccc-eeccCCCCccEEEEccccCCCcHHHHHHHHHHcCCCc
Q psy5227 26 GDKLINWTRTSSMWPMTFGLACCAIEMMHAGASRYDLDRFGI-MFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMTEPK 104 (693)
Q Consensus 26 ~~~rir~~r~~~lw~~~~~c~gc~~e~l~~~~~~~d~~~~~~-~~~~~p~~~Dil~veG~v~~~~~~~~~~~~~~~~~~~ 104 (693)
-++.++|+|++|+|+++|+|+||++|++++.+|.||++|||+ .+++||||||+++|||+||.+|.+.++++|++||+||
T Consensus 12 ~~~~~~~~r~~s~w~~~~~~~cc~~E~~~~~~~~~D~~r~G~~~~~~sPr~aD~llv~G~vt~~~~~~l~~~~~~~p~pk 91 (788)
T PRK13292 12 LDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDISRFGAEVLRGTPREADLMVIAGTVFKKMAPSILRLYEQMAEPK 91 (788)
T ss_pred HHHHHHHHhhCCCcceecCCccHHHHHHHhcCCcCCHHHcCCCccCCCcccceEEEEecCCcHhhHHHHHHHHHhCCCCC
Confidence 356789999999999999999999999999999999999999 5899999999999999999999999999999999999
Q ss_pred eEEeecccCCCCCcCCcCCccccCcceeeecceeccCCCCChhhhHHHHHHHHHHHhh----------------------
Q psy5227 105 WVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYIPGCPPTAEALLYDYYSTMKILRD---------------------- 162 (693)
Q Consensus 105 ~vva~G~CA~~GGi~~~~~~~~~~~~~~v~vd~~ipGCPp~p~~i~~~l~~ll~~Lr~---------------------- 162 (693)
+|||+|+||++||+| ++|+.+.|+++++|||++||||||+|++|++++..+.+.++.
T Consensus 92 ~via~G~Ca~~GG~~-~~y~~~~g~~~~ipVDv~iPGCPP~Pe~i~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (788)
T PRK13292 92 WVISMGSCANSGGMY-DVYSVVQGVNQILPVDVYIPGCPPRPEAFLQGLMLLQEKIRREERPARPVLHLQGGSQGTTRPI 170 (788)
T ss_pred EEEEecccccCCCCc-CccccccCcCCcccccEEccCCCCCHHHHHHHHHHHHHHhhcCcccchhhhhhccCCcccCccc
Confidence 999999999999999 799999999999999999999999999999988876443321
Q ss_pred --------------------------------------------------------------------------------
Q psy5227 163 -------------------------------------------------------------------------------- 162 (693)
Q Consensus 163 -------------------------------------------------------------------------------- 162 (693)
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~f~~~v~~~~~~~~~~~~~v 250 (788)
T PRK13292 171 LVDGATKSRDTRGPGMEGIAIRGTAVQHPRFAGSRSDEMWRPPAPKHPYPDFGLAGELEGAFGDDVRLDEGATDMLTYRC 250 (788)
T ss_pred eeccccccccccCCCcccccccccccCCCcccccchhhhcCCCcccCCCCHHHHHHHHHHHcccceEeeeecCCcEEEEE
Confidence
Q ss_pred --------------hcccccccccccccccccccccccCCCCCCCCCcEEEEEEeeccccCeEEEEEEeecCCCCCCcCc
Q psy5227 163 --------------HVNFRFEQLIDLCGIDYSIYNKNINSDNSNKNLRFAIVLHLLSLNYNWRLRVRVFAENNELPRLHS 228 (693)
Q Consensus 163 --------------~~~~~fd~L~~~~~vd~~~~~~~~~~~~~~~~~~~~~vyh~~~~~~~~~l~v~v~~~~~~~~~~~s 228 (693)
+.+.+|++|.++|||||..+.. ...+++|+++|||.|+..+.+++|+|.+++ ++|++||
T Consensus 251 ~~e~l~~v~~~Lk~~~~~~f~~L~ditaVD~~~~~~------~~~~~~f~vvY~l~s~~~~~~i~vkv~~~~-~~p~~pS 323 (788)
T PRK13292 251 PPELVPEVLRHLKKRASSPFRRLEDLAAVDESCRRD------REKFPDFTVNYHLLSFDTPGHVRIKTELRG-RTPELPS 323 (788)
T ss_pred cHHHHHHHHHHHHhCcCCCCceeeeEEEEeCCcccc------cCcCCcEEEEEEEEeCCCCcEEEEEEEeCC-CCCCCCc
Confidence 1123588889999999863211 113568999999999998889999999887 7899999
Q ss_pred ccccccccchhhhhhccccCceecCCCCCccccccCCCCCCCCCCCCcch---------------------------hhc
Q psy5227 229 ITSLWSSANWYEREAFDLFGIFFDGHDDLRRLLTDYGFVGHPFRKDFPVI---------------------------EIK 281 (693)
Q Consensus 229 ~~~~~~~a~~~Ere~~d~~Gi~~~g~pd~r~~~~~~~~~~~plrk~~~~~---------------------------~~~ 281 (693)
|+++||+|+|+|||+||||||.|+||||+|||++|++|++|||||||+.. +++
T Consensus 324 l~~i~p~A~~~ERE~~D~~Gi~f~ghPdlrr~l~~~~w~~~PLRkD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (788)
T PRK13292 324 ATGVFPAANWYEREAFDMFGIRFAGHPNLRRILMPPDWEGHPLRKEHPFRATEMPPYTRDDARRLQPLPAGDFFDRVDEE 403 (788)
T ss_pred hHhhhccCChhHHHHHHhcCceeCCCCCCccccCCccCCCCCCCCCCCCCccccCcccccccccccccccccccccCCCc
Confidence 99999999999999999999999999999999999999999999998742 224
Q ss_pred cccccCcccCCCCccceEEEEEEcCCeEEEEEeeeccchhhHHHHhhCCCcCccccccccccccchhhHHHHHHHHHHHH
Q psy5227 282 SYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKL 361 (693)
Q Consensus 282 ~~~~~~GP~hp~~~G~~r~~l~v~Ge~I~~~~~~~g~~hRG~Ekllegr~~~~a~~l~~RIcGic~~ah~~A~~~AvE~a 361 (693)
.+++++||+||+++|++||++.++||+|+++++++||.|||+||++|+|++.|++++++||||+|+++|++|||+|||++
T Consensus 404 ~~~l~vGP~Hpg~~gp~rf~l~ldGE~I~~~e~~iGY~HRGiEKl~E~r~~~q~i~l~eRi~g~~s~~~~~ay~~AVE~l 483 (788)
T PRK13292 404 TLILNLGPQHPGTHGIIRFVLKLDGEEIVDMDSDIGYHHRGAEKIGERQHWNQFIPYTDRIDYLAGVQNNLAYVNSVETL 483 (788)
T ss_pred eEEEecCCCCCCCCCCeEEEEEEcCCEEEEEEeecCchhHHHHHHHcCCCHHHhchhhcccccchhhHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHccCCccCCceeeCccccCCCC
Q psy5227 362 LNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPE 441 (693)
Q Consensus 362 ~gievp~ra~~lR~ll~elerI~sHl~~lg~~~~~~g~~~~~~~~~~~Re~~~~i~~~~~G~r~~~~~~~pGGv~~~~~~ 441 (693)
+|++||+|||++|+|++|+|||+|||+|+|.++.++|+.+.+++++++||+++++++.+||+|+|+++++||||+.|+++
T Consensus 484 ~gievP~RA~~iRvil~ELeRI~sHL~~lg~~~~diG~~t~~~~~~~~RE~i~~l~e~ltG~R~~~~~~rpGGV~~Dl~~ 563 (788)
T PRK13292 484 CGIEVPDRAIYIRVMLSELFRIANHLVWLGTFAADVGAMTPVFYTFTDREKIFDIVEMITGGRMHPAWFRIGGVAEDLPE 563 (788)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhccccccCCceeCcccccCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCccchhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccChhhhhccccccccChhhhhhcCCccccc
Q psy5227 442 IMPQYKSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPML 521 (693)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~R~~~~G~l~~~~a~~~g~~Gp~a 521 (693)
+ ++++++++++.+++.++++.+++.+|+++.+|++|+|+++.++|.++|++||++
T Consensus 564 ~-------------------------~~~~i~~~l~~~~~~l~e~~~l~~~n~i~~~R~~gvGvls~e~A~~~G~tGP~a 618 (788)
T PRK13292 564 G-------------------------WKEAVEAFLRWFPGRLKEYEDLLTGNPIFKARLKGVGVITRDEAVEWGISGPNL 618 (788)
T ss_pred H-------------------------HHHHHHHHHHHHHHHHHHHHHHHhcCchHHhhcCCEEecCHHHHHHhCCcccee
Confidence 7 899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccCCCCCcCCcccccccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccCCCcccchhhhhh
Q psy5227 522 RGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKGPVISNNNKITSPARINM 601 (693)
Q Consensus 522 RasG~~~D~R~~~py~~Y~~~~~~~~~~~~gd~~aR~~vR~~Ei~~s~~ii~q~l~~l~~~~g~~~~~~~~~~~p~~~~~ 601 (693)
||||+++|+|++.||..|++++|++++.++||+|||++||+.||.||++||+|+++++| +|++......+.+|.+.+.
T Consensus 619 RASGv~~D~Rk~~PY~~Y~~ldf~v~v~~~GD~~aR~~VR~~Ei~eSl~II~Q~l~~lp--~G~~~~~~~~~~~p~~~~~ 696 (788)
T PRK13292 619 RACGLAWDLRKKMPYGGYDRFDFEVPTAEGGDCYARYLVRMEEMRQSLRIVRQAAAGMP--GGRWISDDYRYVLPQKRDT 696 (788)
T ss_pred ecccCccccccCCCccccccCCcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCccccccccCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999 8887665544445544445
Q ss_pred chhhhhhhhhhcccccccccCcceEEEEeeCCcceeEEEEEECCCCceeEEEEeCCcccCHHHHHHHHcCCChhhHHHHh
Q psy5227 602 KSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTII 681 (693)
Q Consensus 602 ~~~~~~~i~~~~~~~~~~~~~~Geg~g~vEapRG~L~h~v~~d~~g~i~r~~i~~PS~~N~~~le~~l~G~~i~d~~~ii 681 (693)
..++|++|+||.....+..+|.|++++.+|||||+++||+++|++++++|++||+||+.||++|+.+++|+.++|+++|+
T Consensus 697 ~~~~e~~i~~f~~~~~~~~~p~Ge~~~~vEapRGE~~~yv~sdg~~~pyR~kIR~PSf~Nl~al~~~~~G~~iaD~~~i~ 776 (788)
T PRK13292 697 LKDIESLIHHFVNVTRGPAPPKGECYAAIEAPKGENGYFVVSDGLNIAYRMRIRTPSFPHIQALPLLSRGWLVADFLAII 776 (788)
T ss_pred ccchHHhhhhccccccCCCCCCceEEEEEEcCCceEEEEEEECCCCcEEEEEEeCCCHhHHHHHHHHHCCCeechHHHHh
Confidence 57899999999988777778899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCC
Q psy5227 682 GTQDIVFGEIDR 693 (693)
Q Consensus 682 ~S~DpC~sc~dr 693 (693)
+|||||++|+||
T Consensus 777 ~S~D~v~ge~DR 788 (788)
T PRK13292 777 GSIDFVLADLDR 788 (788)
T ss_pred hCcCCCcCCCCC
Confidence 999999999998
No 2
>PRK11742 bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
Probab=100.00 E-value=8.8e-122 Score=1038.00 Aligned_cols=509 Identities=39% Similarity=0.729 Sum_probs=472.7
Q ss_pred HHHHHHHHHhhhcccccccccccccccccccccccCCCCCCCCCcEEEEEEeeccccCeEEEEEEeecCCCCCCcCcccc
Q psy5227 152 DYYSTMKILRDHVNFRFEQLIDLCGIDYSIYNKNINSDNSNKNLRFAIVLHLLSLNYNWRLRVRVFAENNELPRLHSITS 231 (693)
Q Consensus 152 ~l~~ll~~Lr~~~~~~fd~L~~~~~vd~~~~~~~~~~~~~~~~~~~~~vyh~~~~~~~~~l~v~v~~~~~~~~~~~s~~~ 231 (693)
.+..++.+|| +.+.+|++|.++||+||....+ ++...+++|+++|||.|+..+.+++|+|.+++ ++|++|||++
T Consensus 32 ~l~~v~~~Lk-~~~~~f~~L~~lt~vD~~~~~~----~~~~~~~~fevvYhl~s~~~~~~v~vkv~~~~-~~p~ipSi~~ 105 (575)
T PRK11742 32 QLLEVLRFLR-KLPKPYVMLFDLHGIDERLRTH----REGLPAADFTVFYHLISIERNRDIMLKVALSE-NDLHVPTITK 105 (575)
T ss_pred HHHHHHHHHh-ccCCCCceEEEEEEEecCcccc----cccCCCCceEEEEEEEECCCCcEEEEEEEecC-CCCCCCchhh
Confidence 3556688888 4467899999999999963211 01112468999999999998889999999987 7899999999
Q ss_pred cccccchhhhhhccccCceecCCCCCccccccCCCCCCCCCCCCcchh--------------------------------
Q psy5227 232 LWSSANWYEREAFDLFGIFFDGHDDLRRLLTDYGFVGHPFRKDFPVIE-------------------------------- 279 (693)
Q Consensus 232 ~~~~a~~~Ere~~d~~Gi~~~g~pd~r~~~~~~~~~~~plrk~~~~~~-------------------------------- 279 (693)
+||+|+|+|||+||||||.|+||||+|||++|++|++|||||||+..+
T Consensus 106 i~p~A~w~ERE~~d~fGi~f~ghPdlr~~l~~~d~~~~PlRKd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (575)
T PRK11742 106 IFPNANWYERETWDMFGITFDGHPHLRRILMPPTWEGHPLRKDYPARATEFDPFELTKAKQDLEMEALRFKPEEWGMKRG 185 (575)
T ss_pred hcccCCchHHHHHHhcCceeCCCCCCcccCCCCCCCCCCCCCCCCCCccccccccccccccccccccCCccchhcccccc
Confidence 999999999999999999999999999999999999999999987532
Q ss_pred ---hccccccCcccCCCCccceEEEEEEcCCeEEEEEeeeccchhhHHHHhhCCCcCccccccccccccchhhHHHHHHH
Q psy5227 280 ---IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVM 356 (693)
Q Consensus 280 ---~~~~~~~~GP~hp~~~G~~r~~l~v~Ge~I~~~~~~~g~~hRG~Ekllegr~~~~a~~l~~RIcGic~~ah~~A~~~ 356 (693)
++.+++++||+||+++|+++|.+.++||+|+++++++||.||||||+++||++.|++++++||||+|+++|++|||+
T Consensus 186 ~~~~~~~~l~~GP~Hp~~~g~~r~~l~ldGE~V~~~e~~~Gy~HRGiEkl~e~~~~~~~~~l~eRicg~~s~ah~~a~~~ 265 (575)
T PRK11742 186 TDNEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIDYLGGCMNEMPYVL 265 (575)
T ss_pred CCCCceEEeecCCCCCCCCCCeEEEEEEcCCEEEEEEEEeCCCccHHHHHHcCCChHHccchhccccccchhHHHHHHHH
Confidence 22689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHccCCccCCceeeCccc
Q psy5227 357 AIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVY 436 (693)
Q Consensus 357 AvE~a~gievp~ra~~lR~ll~elerI~sHl~~lg~~~~~~g~~~~~~~~~~~Re~~~~i~~~~~G~r~~~~~~~pGGv~ 436 (693)
|||+++|+++|+|||++|+|++|+|||+|||+|+|.++.++|+.+++++++++||.++++++.+||+|+|+++++||||+
T Consensus 266 AvE~l~gievP~rA~~iR~il~EleRI~sHl~~lg~l~~d~G~~t~~~~~~~~RE~~~~l~e~itG~R~~~~~~~pGGv~ 345 (575)
T PRK11742 266 AVEKLAGITVPDRVNVIRVMLSELFRINSHLLYIGTFIQDVGAMTPVFFAFTDRQKIYDVIEAITGFRMHPAWFRIGGVA 345 (575)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCcccCceeeCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccchhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccChhhhhccccccccChhhhhhcCC
Q psy5227 437 RDLPEIMPQYKSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGF 516 (693)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~R~~~~G~l~~~~a~~~g~ 516 (693)
+|++++ +++++.+.++.+++.++++.+++.+|+++.+|++|+|+++.++|.++|+
T Consensus 346 ~dl~~~-------------------------~~~~i~~~l~~~~~~~~~~~~~~~~n~i~~~R~~gvGvl~~~~A~~~g~ 400 (575)
T PRK11742 346 HDLPRG-------------------------WDRLLREFLDWMPKRLDEYEKAALRNSILKGRTQGVAAYNAKEALEWGV 400 (575)
T ss_pred cCCCHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHhcCcEeecCHHHHHHhCC
Confidence 999987 8999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCccCCCCCcCCcccccccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccCCCcccch
Q psy5227 517 TGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKGPVISNNNKITSP 596 (693)
Q Consensus 517 ~Gp~aRasG~~~D~R~~~py~~Y~~~~~~~~~~~~gd~~aR~~vR~~Ei~~s~~ii~q~l~~l~~~~g~~~~~~~~~~~p 596 (693)
+||++||||+++|+|++.||..|++++|++++.++||+|||++||+.|+.||++||+|+++++| +|++.........|
T Consensus 401 ~GP~~RASGv~~D~R~~~PY~~Y~~l~f~v~v~~~GD~~aR~~VR~~Ei~qSl~iI~q~l~~lp--~G~~~~~~~~~~~~ 478 (575)
T PRK11742 401 TGAGLRATGIDFDVRKARPYSGYENFDFEVPVGGNGDCYDRVMVKVEEMRQSLRIIEQCLDNMP--EGPFKADHPLTTPP 478 (575)
T ss_pred ccceeeeccCcceeccCCCcccccccCccCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCcccccccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999 88865443222222
Q ss_pred hhhhhchhhhhhhhhhcccccccccCcceEEEEeeCCcceeEEEEEECCCCceeEEEEeCCcccCHHHHHHHHcCCChhh
Q psy5227 597 ARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISD 676 (693)
Q Consensus 597 ~~~~~~~~~~~~i~~~~~~~~~~~~~~Geg~g~vEapRG~L~h~v~~d~~g~i~r~~i~~PS~~N~~~le~~l~G~~i~d 676 (693)
.+.+...++|++|+||+.+..++++|.|++++++|||||+++||+++|++++++|++||+||+.||++++.+++|+.++|
T Consensus 479 ~~~~~~~~~e~~i~~f~~~~~~~~~p~ge~~~~vEapRGe~~~~v~sdg~~~p~R~kiR~Ps~~n~~~l~~~~~G~~iaD 558 (575)
T PRK11742 479 PKERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQQIPSVIRGSLVSD 558 (575)
T ss_pred cccccccchHHhhhhcccccccccCCCceEEEEEEcCCceEEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHCCCchhh
Confidence 22333368999999999988888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccccccCCC
Q psy5227 677 VVTIIGTQDIVFGEIDR 693 (693)
Q Consensus 677 ~~~ii~S~DpC~sc~dr 693 (693)
+++|++|||||++|+||
T Consensus 559 ~~~i~~S~d~~~~~~DR 575 (575)
T PRK11742 559 LIVYLGSIDFVMSDVDR 575 (575)
T ss_pred HHHHhhCcCCCccccCC
Confidence 99999999999999998
No 3
>COG0649 NuoD NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Energy production and conversion]
Probab=100.00 E-value=1.4e-99 Score=786.50 Aligned_cols=386 Identities=63% Similarity=1.120 Sum_probs=381.0
Q ss_pred ccccccCcccCCCCccceEEEEEEcCCeEEEEEeeeccchhhHHHHhhCCCcCccccccccccccchhhHHHHHHHHHHH
Q psy5227 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEK 360 (693)
Q Consensus 281 ~~~~~~~GP~hp~~~G~~r~~l~v~Ge~I~~~~~~~g~~hRG~Ekllegr~~~~a~~l~~RIcGic~~ah~~A~~~AvE~ 360 (693)
..+.+++||+||++||++|+.+.+|||.|+++++.+||.|||+|||+|.|+|.|.+++++|+|++++..+++||++|+|+
T Consensus 13 ~~~~ln~GPqHPs~hG~lRlil~ldGE~Vv~~~p~iGylHRg~EKl~E~r~y~q~ipy~dR~dy~~~~~ne~ay~~AvEk 92 (398)
T COG0649 13 ENMFLNFGPQHPSTHGVLRLILELDGEIVVDADPDIGYLHRGMEKLAENRTYLQNIPYTDRLDYLSAMNNELAYVLAVEK 92 (398)
T ss_pred cceEEecCCCCCCCCCeEEEEEEecCcEEEeccCCcccccccHHHHhhhccccccccccchhhhccccchhHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHccCCccCCceeeCccccCCC
Q psy5227 361 LLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLP 440 (693)
Q Consensus 361 a~gievp~ra~~lR~ll~elerI~sHl~~lg~~~~~~g~~~~~~~~~~~Re~~~~i~~~~~G~r~~~~~~~pGGv~~~~~ 440 (693)
++|+|||+|||+||+|++|+.||.|||+|+|.++.|+|+.++++++|+.||++++++|.+||+|+|+++++||||++|+|
T Consensus 93 LlgieVPeRAq~IRvm~~EL~RI~sHLl~lg~~~~dlGa~T~f~yaf~eRE~i~~l~E~~tGaRm~~~y~rpGGV~~DlP 172 (398)
T COG0649 93 LLGIEVPERAQYIRVMLSELNRIASHLLWLGTFALDLGAMTPFLYAFREREKIMDLFEAITGARMHHAYFRPGGVRRDLP 172 (398)
T ss_pred HhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccHhhhhhHHHHHHHHHHHHHhcccccccccccCcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccchhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccChhhhhccccccccChhhhhhcCCcccc
Q psy5227 441 EIMPQYKSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520 (693)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~R~~~~G~l~~~~a~~~g~~Gp~ 520 (693)
++ +++.++++++++++.++++.+++.+|++|..|++|+|+++.++|.+||+|||.
T Consensus 173 ~~-------------------------~~e~i~~f~d~~~~~l~eye~l~~~N~I~~~R~~gVGv~s~e~A~~~G~tGp~ 227 (398)
T COG0649 173 EG-------------------------WLELIREFLDYFPKRLDEYEKLLTKNRIWRARLEGVGVLSKEEALEWGVTGPM 227 (398)
T ss_pred HH-------------------------HHHHHHHHHHHHHHhHHHHHHHHhcChHHHHhcccceeecHHHHHHhCCcCcc
Confidence 98 99999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccCCCCCcCCcccccccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccCCCcccchhhhh
Q psy5227 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKGPVISNNNKITSPARIN 600 (693)
Q Consensus 521 aRasG~~~D~R~~~py~~Y~~~~~~~~~~~~gd~~aR~~vR~~Ei~~s~~ii~q~l~~l~~~~g~~~~~~~~~~~p~~~~ 600 (693)
+||||++||+||.+||..|++++|++|+++.||+|||++||+.|++||++||+||+++++ .||+........+|++..
T Consensus 228 lR~SGv~~DvRK~~PY~~Yd~~dFdVpv~~~GD~yaR~lvR~~EmrqS~rIIeQcl~~l~--~gP~~~~~~~~~~p~~~~ 305 (398)
T COG0649 228 LRASGVDYDVRKDEPYEAYDELDFDVPVGKNGDCYARYLVRMEEMRQSIRIIEQCLDKLP--KGPVKNEDPKTTPPSKER 305 (398)
T ss_pred ccccCCcchhccccccccccccceeccccCCCchhhhhhhhHHHHHHHHHHHHHHHHhCc--CCCCcccccccCCCchHH
Confidence 999999999999999999999999999999999999999999999999999999999999 899988888888888899
Q ss_pred hchhhhhhhhhhcccccccccCcceEEEEeeCCcceeEEEEEECCCCceeEEEEeCCcccCHHHHHHHHcCCChhhHHHH
Q psy5227 601 MKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTI 680 (693)
Q Consensus 601 ~~~~~~~~i~~~~~~~~~~~~~~Geg~g~vEapRG~L~h~v~~d~~g~i~r~~i~~PS~~N~~~le~~l~G~~i~d~~~i 680 (693)
++..+|++|+||++++.++++|.||.|+.+|||||++++|+.+||+.++||++||+|||+|+++|+.+++|..++|++.|
T Consensus 306 ~~~~~e~li~~f~l~~~g~~vP~GE~y~~vE~~kGE~g~yv~SDG~~kPYR~kiR~Psf~~L~~~~~~~~G~~~AD~~ai 385 (398)
T COG0649 306 MKESMEALIHHFKLVTEGFKVPAGEVYAAVEAPKGELGVYIVSDGSNKPYRVKIRAPSFAHLQALPELLKGHRLADLIAI 385 (398)
T ss_pred hhhhHHHHhhheeeecccccCCCCceEEeeecCCccEEEEEEeCCCCCceeEEecCCChhHHHHHHHHhCCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccccCCC
Q psy5227 681 IGTQDIVFGEIDR 693 (693)
Q Consensus 681 i~S~DpC~sc~dr 693 (693)
++|+|+|++++||
T Consensus 386 lGS~D~v~gEvDR 398 (398)
T COG0649 386 LGSIDIVMGEVDR 398 (398)
T ss_pred HhccCccCCCCCC
Confidence 9999999999998
No 4
>PRK06075 NADH dehydrogenase subunit D; Validated
Probab=100.00 E-value=2.8e-95 Score=790.71 Aligned_cols=386 Identities=72% Similarity=1.230 Sum_probs=372.5
Q ss_pred ccccccCcccCCCCccceEEEEEEcCCeEEEEEeeeccchhhHHHHhhCCCcCccccccccccccchhhHHHHHHHHHHH
Q psy5227 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEK 360 (693)
Q Consensus 281 ~~~~~~~GP~hp~~~G~~r~~l~v~Ge~I~~~~~~~g~~hRG~Ekllegr~~~~a~~l~~RIcGic~~ah~~A~~~AvE~ 360 (693)
+.+++++||+||++|||++|.+.++||+|+++++++||.||||||+++||++.|++++++||||+|+++|++||++|||+
T Consensus 5 ~~~~l~vGP~Hp~~~G~~r~~l~~dge~I~~~~~~~gy~hRG~Ek~~egr~~~~~~~l~eRicgic~~~h~~a~~~AvE~ 84 (392)
T PRK06075 5 RNYTLNFGPQHPAAHGVLRLILELDGEVVVRADPHIGYLHRGTEKLAEYRTYLQAIPYFDRLDYVSPMNNEHAYCLAVEK 84 (392)
T ss_pred ceEEEeeCCcCCCCccceEEEEEEcCCEEEEEEEeeccccchHHHHhcCCCHHHhhhhhCccccccHhHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHccCCccCCceeeCccccCCC
Q psy5227 361 LLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLP 440 (693)
Q Consensus 361 a~gievp~ra~~lR~ll~elerI~sHl~~lg~~~~~~g~~~~~~~~~~~Re~~~~i~~~~~G~r~~~~~~~pGGv~~~~~ 440 (693)
++|+++|++|+++|+|++|+|||+||++|+|.++.++|+.+.+++++++||.++++++.+||+|+|+++++||||++|++
T Consensus 85 ~~gi~vp~ra~~lR~i~~EleRi~sHl~~lg~l~~~~G~~t~~~~~~~~RE~~~~l~e~itG~R~~~~~~~~GGv~~dl~ 164 (392)
T PRK06075 85 LLGIEVPERAQYIRVLFLELNRILSHLLWLGTHALDLGAMTVFLWGFREREKLLDLYEAVTGARMHHAYIRPGGVRRDLP 164 (392)
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHcCCCcccCceecCceecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccchhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccChhhhhccccccccChhhhhhcCCcccc
Q psy5227 441 EIMPQYKSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520 (693)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~R~~~~G~l~~~~a~~~g~~Gp~ 520 (693)
++ +++++.+.++.+++.++++.+++.+|++|.+|++|+|+++.++|.++|++||+
T Consensus 165 ~~-------------------------~~~~i~~~l~~~~~~~~~~~~~~~~n~~~~~R~~gvGvl~~~~A~~~g~~GP~ 219 (392)
T PRK06075 165 DG-------------------------LLEDIRDFLDYFPKRLDDYETLLTDNRIWKQRLVGVGVVSKERALALGFTGPM 219 (392)
T ss_pred HH-------------------------HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHhcCcEeecCHHHHHHhCCcCce
Confidence 87 88899999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccCCCCCcCCcccccccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhc--ccCCCCcccCCCcccchhh
Q psy5227 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWL--RSNKGPVISNNNKITSPAR 598 (693)
Q Consensus 521 aRasG~~~D~R~~~py~~Y~~~~~~~~~~~~gd~~aR~~vR~~Ei~~s~~ii~q~l~~l--~~~~g~~~~~~~~~~~p~~ 598 (693)
+||||+++|+|++.||..|++++|++++.++||+|||++||+.|+.||++||+|+++++ | +|++........+|+.
T Consensus 220 ~RASGv~~D~R~~~py~~Y~~l~f~v~v~~~GD~~aR~~VR~~Ei~eSl~ii~q~l~~l~~p--~g~~~~~~~~~~~~~~ 297 (392)
T PRK06075 220 LRASGVAWDLRKSQPYEVYDELDFDVPVGKNGDCYDRYLVRVEEMRQSLRIIEQCLDRLRPP--PGPVMVDDPKIAPPAR 297 (392)
T ss_pred eeccCCcceeccCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCCccccccccCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999 7 7887655434444555
Q ss_pred hhhchhhhhhhhhhcccccccccCcceEEEEeeCCcceeEEEEEECCCCceeEEEEeCCcccCHHHHHHHHcCCChhhHH
Q psy5227 599 INMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVV 678 (693)
Q Consensus 599 ~~~~~~~~~~i~~~~~~~~~~~~~~Geg~g~vEapRG~L~h~v~~d~~g~i~r~~i~~PS~~N~~~le~~l~G~~i~d~~ 678 (693)
.+.+.++|++|+||+.+..++++|.|++++.+|||||+++||+.+|++++|+|++|++||+.||++++.+++|+.++|++
T Consensus 298 ~~~~~~~~~~~~~f~~~~~~~~~p~ge~~~~vEapRGe~~~~v~~dg~~~p~R~kir~PSf~n~~~l~~~~~G~~iaD~~ 377 (392)
T PRK06075 298 LEMKTSMEALIHHFKLVTEGFRVPAGEVYAAVESPKGEFGVYLVSDGGNKPYRVKIRAPSFAHLQALDEMCRGHMLADVV 377 (392)
T ss_pred hhhhcchHHHhhhcccccccccCCCceEEEEEecCCccEEEEEEECCCCcEEEEEEeCCChhHHHHHHHHhCCCChhhHH
Confidence 56678999999999999988888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccccccccCCC
Q psy5227 679 TIIGTQDIVFGEIDR 693 (693)
Q Consensus 679 ~ii~S~DpC~sc~dr 693 (693)
+|++|||||++|+||
T Consensus 378 ~i~~S~d~~~~~~DR 392 (392)
T PRK06075 378 AIIGSLDIVFGEVDR 392 (392)
T ss_pred HHhhCcCccccccCC
Confidence 999999999999998
No 5
>CHL00017 ndhH NADH dehydrogenase subunit 7
Probab=100.00 E-value=2.8e-94 Score=779.34 Aligned_cols=388 Identities=43% Similarity=0.740 Sum_probs=362.5
Q ss_pred chhhccccccCcccCCCCccceEEEEEEcCCeEEEEEeeeccchhhHHHHhhCCCcCccccccccccccchhhHHHHHHH
Q psy5227 277 VIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVM 356 (693)
Q Consensus 277 ~~~~~~~~~~~GP~hp~~~G~~r~~l~v~Ge~I~~~~~~~g~~hRG~Ekllegr~~~~a~~l~~RIcGic~~ah~~A~~~ 356 (693)
..+.+.+++|+||+||+++||+||.+.++||+|+++++++||.|||+||++|+|++.|++++++|+||+|+++|++|||+
T Consensus 5 ~~~~~~~~l~~GP~Hp~~~g~~r~~l~~~GE~I~~~e~~~GY~HRGiEKl~E~r~~~q~i~l~eRi~~~~~~~~~~~y~~ 84 (393)
T CHL00017 5 ATRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVN 84 (393)
T ss_pred ecCCCeEEEecCCCCCCCcCceEEEEEEcCCEEEEEeeecccchHHHHHHHccCCHHHcCeeeeecccccHhHHHHHHHH
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHccCCccCCceeeCccc
Q psy5227 357 AIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVY 436 (693)
Q Consensus 357 AvE~a~gievp~ra~~lR~ll~elerI~sHl~~lg~~~~~~g~~~~~~~~~~~Re~~~~i~~~~~G~r~~~~~~~pGGv~ 436 (693)
|||+++|++||+|||++|+|++|+|||+|||+|+|.++.|+|+.+.+++++++||.++++++.+||+|+++++++||||+
T Consensus 85 AVE~l~gievP~RA~~iRvi~~ELeRi~sHL~~lg~~~~diG~~t~~~~~~~~RE~il~~~e~itG~R~~~~~~~~GGv~ 164 (393)
T CHL00017 85 APEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVA 164 (393)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhcCcccccCceeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccchhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccChhhhhccccccccChhhhhhcCC
Q psy5227 437 RDLPEIMPQYKSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGF 516 (693)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~R~~~~G~l~~~~a~~~g~ 516 (693)
+|++++ +++++.++++.+++.++++.+++.+|+++.+|++|+|+++.++|.++|+
T Consensus 165 ~Dl~~~-------------------------~~~~i~~~l~~~~~~~~~~~~l~~~n~i~~~R~~gvGvl~~~~A~~~g~ 219 (393)
T CHL00017 165 ADLPYG-------------------------WIDKCLDFCDYFLTGVAEYQKLITRNPIFLERVEGVGIIGGEEAINWGL 219 (393)
T ss_pred cCCCHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHhcCCEEecCHHHHHHhCC
Confidence 999987 8999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCccCCCCCcCCcccccccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccCC-Ccccc
Q psy5227 517 TGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKGPVISNN-NKITS 595 (693)
Q Consensus 517 ~Gp~aRasG~~~D~R~~~py~~Y~~~~~~~~~~~~gd~~aR~~vR~~Ei~~s~~ii~q~l~~l~~~~g~~~~~~-~~~~~ 595 (693)
+||++||||+++|+|++.||..|++++|+++++++||+|||++||+.|+.||++||+|++++|| +|++.... ....+
T Consensus 220 ~GP~aRASGv~~D~R~~~pY~~Y~~l~f~v~~~~~GD~~aR~~VR~~Ei~eSl~II~Q~l~~lp--~G~~~~~~~~~~~~ 297 (393)
T CHL00017 220 SGPMLRASGIQWDLRKVDHYECYDEFDWEVQWQKEGDSLARYLVRIGEMTESIKIIQQALEGIP--GGPYENLEARRFDR 297 (393)
T ss_pred cCceeeeccCchhhccCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCcccccccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999 88865432 12333
Q ss_pred hhhhhhchhhhhhhhhhcccccccccCcceEEEEeeCCcceeEEEEEECCCCceeEEEEeCCcccCHHHHHHHHcCCChh
Q psy5227 596 PARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMIS 675 (693)
Q Consensus 596 p~~~~~~~~~~~~i~~~~~~~~~~~~~~Geg~g~vEapRG~L~h~v~~d~~g~i~r~~i~~PS~~N~~~le~~l~G~~i~ 675 (693)
|+..+. .++++.+.+++... ++++|.|++++.+|||||+++||+++|++++|+|++||+|||.||++++.+++|+.++
T Consensus 298 ~~~~~~-~~~~~~~~~~~~~~-~~~~p~ge~~~~vEapRGe~~~~l~sdg~~~p~R~kiR~Psf~n~~~l~~~~~G~~ia 375 (393)
T CHL00017 298 EKDSEW-NDFEYRFISKKPSP-TFELSKQELYVRVEAPKGELGIFLIGDDSVFPWRWKIRPPGFINLQILPQLVKRMKLA 375 (393)
T ss_pred cccccc-chhhhhhccceecc-cccCCCceEEEEEEcCCceEEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHCCCeec
Confidence 333233 23445554454442 4667899999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhcccccccccCCC
Q psy5227 676 DVVTIIGTQDIVFGEIDR 693 (693)
Q Consensus 676 d~~~ii~S~DpC~sc~dr 693 (693)
|+++|++|+|||++|+||
T Consensus 376 D~~~i~~S~D~~~~e~DR 393 (393)
T CHL00017 376 DIMTILGSIDIIMGEVDR 393 (393)
T ss_pred hHHHHhhCcCCCcCCCCC
Confidence 999999999999999998
No 6
>TIGR01962 NuoD NADH dehydrogenase I, D subunit. This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion.
Probab=100.00 E-value=4.7e-94 Score=780.54 Aligned_cols=385 Identities=59% Similarity=1.057 Sum_probs=368.0
Q ss_pred cccccCcccCCCCccceEEEEEEcCCeEEEEEeeeccchhhHHHHhhCCCcCccccccccccccchhhHHHHHHHHHHHH
Q psy5227 282 SYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKL 361 (693)
Q Consensus 282 ~~~~~~GP~hp~~~G~~r~~l~v~Ge~I~~~~~~~g~~hRG~Ekllegr~~~~a~~l~~RIcGic~~ah~~A~~~AvE~a 361 (693)
.+++|+||+||+++||+||.+.++||+|+++++++||.||||||+++||++.|++++++||||+|+++|++||++|+|++
T Consensus 2 ~~~l~~GP~Hp~~~g~~r~~l~~~ge~I~~~~~~~gy~hRG~Ekl~egr~~~~~~~l~eRicgics~~h~~a~~~AvE~~ 81 (386)
T TIGR01962 2 FMILNLGPQHPSTHGVLRLILELDGEYVVRADPHIGYLHRGTEKLAENRTYQQYIPYTDRLDYLSPFSNELAYCLAVEKL 81 (386)
T ss_pred ceEeecCCCCCCCCCceEEEEEEcCCEEEEEEEeecCCCchHHHHHcCCCHHHhhhhhCccccccHhHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHccCCccCCceeeCccccCCCC
Q psy5227 362 LNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPE 441 (693)
Q Consensus 362 ~gievp~ra~~lR~ll~elerI~sHl~~lg~~~~~~g~~~~~~~~~~~Re~~~~i~~~~~G~r~~~~~~~pGGv~~~~~~ 441 (693)
+|+++|++|+++|+|++|+|||+||++|++.++.|+|+.+.+++++++||.++++++.+||+|+|+++++||||++|+++
T Consensus 82 ~gievp~ra~~lR~i~~EleRi~sHl~~l~~~~~dig~~~~~~~~~~~RE~~~~~~e~itG~R~~~~~~~pGGv~~dl~~ 161 (386)
T TIGR01962 82 LGIEVPRRAQVIRVMLSELNRISSHLLFIGTHALDLGAMTPFLYAFREREKILDLFEAITGARMHSAYFRIGGVALDLPE 161 (386)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHcCCCcccCceecCccccCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCccchhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccChhhhhccccccccChhhhhhcCCccccc
Q psy5227 442 IMPQYKSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPML 521 (693)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~R~~~~G~l~~~~a~~~g~~Gp~a 521 (693)
+ +++++.++++.+++.++++.+++.+|+++.+|++|+|+++.++|.++|++||++
T Consensus 162 ~-------------------------~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~R~~gvGvl~~~~A~~~g~~GP~a 216 (386)
T TIGR01962 162 N-------------------------WLEEIREFLEQFPKRLRDYETLLNENRIWKQRTQGVGVVSAKDALDWGLTGPML 216 (386)
T ss_pred H-------------------------HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhCCeeecCHHHHHHhCCcCcee
Confidence 7 888999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccCCCCCcCCcccccccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccCCCcccchhhhhh
Q psy5227 522 RGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKGPVISNNNKITSPARINM 601 (693)
Q Consensus 522 RasG~~~D~R~~~py~~Y~~~~~~~~~~~~gd~~aR~~vR~~Ei~~s~~ii~q~l~~l~~~~g~~~~~~~~~~~p~~~~~ 601 (693)
||||+++|+|+++||..|++++|++++.++||+|||++||+.|+.||++||+|+++++| +|++........+|...+.
T Consensus 217 RASGv~~D~R~~~py~~Y~~l~f~~~~~~~GD~~aR~~VR~~Ei~eSi~ii~q~l~~lp--~g~~~~~~~~~~~~~~~~~ 294 (386)
T TIGR01962 217 RGSGIDWDIRKSEPYEGYDEYDFDVPVGGNGDCYDRYLLRVLEMRESIKIIEQCLEKMP--PGPIKADNPKLAPPPKERM 294 (386)
T ss_pred eccCCcceeccCCCccccCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCccccccccCCcchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999 7886544322223333455
Q ss_pred chhhhhhhhhhcccccccccCcceEEEEeeCCcceeEEEEEECCCCceeEEEEeCCcccCHHHHHHHHcCCChhhHHHHh
Q psy5227 602 KSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTII 681 (693)
Q Consensus 602 ~~~~~~~i~~~~~~~~~~~~~~Geg~g~vEapRG~L~h~v~~d~~g~i~r~~i~~PS~~N~~~le~~l~G~~i~d~~~ii 681 (693)
...+|++|+||+....+.++|.|++++.+|||||+++||+.+|++++|+|++|++||+.||++++.+++|+.++|+++|+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~p~ge~~~~vE~pRGe~~~~v~~dg~~~p~R~kir~Ps~~n~~~l~~~~~G~~iaD~~~i~ 374 (386)
T TIGR01962 295 LTSMEALIHHFKLVTEGFRVPAGEVYVPIESPKGELGFYIISDGGTKPYRLKIRAPSFAHLQALEAMCVGHYLADLIAIL 374 (386)
T ss_pred ccchHHHhhhccccccccCCCCceEEEEEEcCCceEEEEEEECCCCcEEEEEEeCCCHHHHHHHHHHHCCCeechHHHHH
Confidence 67899999999988877778999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCC
Q psy5227 682 GTQDIVFGEIDR 693 (693)
Q Consensus 682 ~S~DpC~sc~dr 693 (693)
+|||||++|+||
T Consensus 375 ~S~d~~~~~~dR 386 (386)
T TIGR01962 375 GSIDPVMGEVDR 386 (386)
T ss_pred hCcCcCccccCC
Confidence 999999999998
No 7
>PRK12322 NADH dehydrogenase subunit D; Provisional
Probab=100.00 E-value=3.7e-93 Score=765.87 Aligned_cols=361 Identities=45% Similarity=0.844 Sum_probs=348.8
Q ss_pred ccccccCcccCCCCccceEEEEEEcCCeEEEEEeeeccchhhHHHHhhCCCcCccccccccccccchhhHHHHHHHHHHH
Q psy5227 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEK 360 (693)
Q Consensus 281 ~~~~~~~GP~hp~~~G~~r~~l~v~Ge~I~~~~~~~g~~hRG~Ekllegr~~~~a~~l~~RIcGic~~ah~~A~~~AvE~ 360 (693)
..+++|+||+||+++||+||.+.++||+|+++++++||+|||+||++|||++.|++++++||||+|+++|++||++|||+
T Consensus 5 ~~~~l~vGP~Hp~~~g~~r~~l~~~GE~I~~~e~~~Gy~HRG~Ek~~e~~~~~~~~~l~eRi~g~~s~~h~~a~~~AvE~ 84 (366)
T PRK12322 5 EEMLLNVGPQHPSTHGVFRLVLKIDGEIIVEATPVIGYLHRGTEKLAESLQYTQIIPYTDRMDYLSAMTNNYVYCHAVET 84 (366)
T ss_pred ceEEEecCCCCCCCCCceEEEEEEcCCEEEEEEEecchhhhHHHHHhcCCCHHHhhhhcCccccccHhHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHccCCccCCceeeCccccCCC
Q psy5227 361 LLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLP 440 (693)
Q Consensus 361 a~gievp~ra~~lR~ll~elerI~sHl~~lg~~~~~~g~~~~~~~~~~~Re~~~~i~~~~~G~r~~~~~~~pGGv~~~~~ 440 (693)
++|+++|+||+++|+|++|+|||+|||+|+|.++.++|+.+.+++++++||.++++++.+||+|+++++++||||++|++
T Consensus 85 ~~gievp~ra~~iR~i~~EleRi~sHl~~~g~~~~diG~~t~~~~~~~~RE~i~~~~e~~tG~R~~~~~~~~GGv~~dl~ 164 (366)
T PRK12322 85 MMGLEVPERAEYLRVIAMELGRIASHLVWWGTYLLDIGAVSPFLYAFREREMIINLLNELCGARLTFNYMRIGGVKWDAP 164 (366)
T ss_pred HHCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhCccccccccccCCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCccchhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccChhhhhccccccccChhhhhhcCCcccc
Q psy5227 441 EIMPQYKSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520 (693)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~R~~~~G~l~~~~a~~~g~~Gp~ 520 (693)
++ +++++.++++.+++.++++.+++.+|++|.+|++|+|+++.++|.++|++||+
T Consensus 165 ~~-------------------------~~~~i~~~l~~~~~~~~~~~~~~~~n~~~~~R~~gvGvl~~~~A~~~g~~GP~ 219 (366)
T PRK12322 165 DG-------------------------WIEKVKEFVPYMREQLAGYHDLVTGNEIFLNRVKGVGIYSAEEAISYSLSGVN 219 (366)
T ss_pred HH-------------------------HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHhcCCeeecCHHHHHHhCCcCce
Confidence 87 88999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccCCCCCcCCcccccccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCcccCCCcccchhhh
Q psy5227 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNK-GPVISNNNKITSPARI 599 (693)
Q Consensus 521 aRasG~~~D~R~~~py~~Y~~~~~~~~~~~~gd~~aR~~vR~~Ei~~s~~ii~q~l~~l~~~~-g~~~~~~~~~~~p~~~ 599 (693)
+||||+++|+|+++||..|++++|++++.++||+|||++||+.|+.||++||+|++++|| + |++..+.+.
T Consensus 220 ~RASGv~~D~R~~~pY~~Y~~l~f~~~~~~~GD~~aR~~VR~~Ei~eSi~iI~q~l~~lp--~~G~~~~~~~~------- 290 (366)
T PRK12322 220 LRCTGVNWDLRKDEPYSIYDRFDFDIPVGSVGDCWDRYVCRMQEIEQSLKIIEQAVEQFP--KEGPVLAKVPK------- 290 (366)
T ss_pred eeeccCcchhccCCCccccccCCcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC--ccCCccccCCC-------
Confidence 999999999999999999999999999999999999999999999999999999999998 7 876543211
Q ss_pred hhchhhhhhhhhhcccccccccCcceEEEEeeCCcceeEEEEEECCCCceeEEEEeCCcccCHHHHHHHHcCCChhhHHH
Q psy5227 600 NMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVT 679 (693)
Q Consensus 600 ~~~~~~~~~i~~~~~~~~~~~~~~Geg~g~vEapRG~L~h~v~~d~~g~i~r~~i~~PS~~N~~~le~~l~G~~i~d~~~ 679 (693)
.+++|.|++++.+|||||+++||+++|++++|+|++|++||+.||++++.+++|+.++|+++
T Consensus 291 ------------------~~~~p~ge~~~~vEapRGe~~~~v~sdg~~~p~R~kiR~PSf~n~~~l~~~~~G~~iaD~~~ 352 (366)
T PRK12322 291 ------------------IIKAPKGEAYVRIESPRGEIGCYIASDGKKKPYRLKFRRPSFYNLQILPKLLKGENIANLIA 352 (366)
T ss_pred ------------------CCCCCCceEEEEEecCCceEEEEEEECCCCcEEEEEEeCCCHHHHHHHHHHHCCCeechHHH
Confidence 12347899999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccccccccCCC
Q psy5227 680 IIGTQDIVFGEIDR 693 (693)
Q Consensus 680 ii~S~DpC~sc~dr 693 (693)
|++|||||++|+||
T Consensus 353 i~~S~d~~~~e~Dr 366 (366)
T PRK12322 353 ILGSIDIVLGEVDG 366 (366)
T ss_pred HhhCcCCCCCcCCC
Confidence 99999999999998
No 8
>PRK07415 NAD(P)H-quinone oxidoreductase subunit H; Validated
Probab=100.00 E-value=9e-93 Score=767.83 Aligned_cols=381 Identities=44% Similarity=0.776 Sum_probs=358.0
Q ss_pred ccccccCcccCCCCccceEEEEEEcCCeEEEEEeeeccchhhHHHHhhCCCcCccccccccccccchhhHHHHHHHHHHH
Q psy5227 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEK 360 (693)
Q Consensus 281 ~~~~~~~GP~hp~~~G~~r~~l~v~Ge~I~~~~~~~g~~hRG~Ekllegr~~~~a~~l~~RIcGic~~ah~~A~~~AvE~ 360 (693)
+.+++++||+||+++|++||.+.++||+|+++++++||.|||+||++|+|++.|++++++|+||+++++|++|||+|||+
T Consensus 9 ~~~~l~~GP~Hp~~~g~~r~~l~~~GE~I~~~e~~~Gy~HRGiEKl~E~r~~~q~~~l~eR~~~~~~~~~~~ay~~AVE~ 88 (394)
T PRK07415 9 EPMVLNFGPHHPSMHGVLRLIVTLDGEDVVDCEPVIGYLHRGMEKIAENRTNVMYVPYVSRWDYAAGMFNEAITVNAPEK 88 (394)
T ss_pred ceEEEecCCCCCCCCCceEEEEEEcCCEEEEeeeeeccccchHHHHHcCCCHhHcCeeeccccchhHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHccCCcc-CCceeeCccccCC
Q psy5227 361 LLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMH-AAYYRPGGVYRDL 439 (693)
Q Consensus 361 a~gievp~ra~~lR~ll~elerI~sHl~~lg~~~~~~g~~~~~~~~~~~Re~~~~i~~~~~G~r~~-~~~~~pGGv~~~~ 439 (693)
++|+++|+|||++|+|++|+|||+|||+++|.++.++|+.+.+++++++||.+++++|.+||+|++ +++++||||++|+
T Consensus 89 l~gievP~Ra~~iR~i~~ELeRi~sHL~~~g~~~~diG~~t~~~~~~~~RE~il~~~e~itG~R~~~~~~~~~GGV~~Dl 168 (394)
T PRK07415 89 LANIPVPKRASYIRVIMLELNRIANHLLWLGPFLADVGAQTPFFYIFREREMIYDLWEAATGQRLINNNYFRIGGVAADL 168 (394)
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccccccccCceeeCccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred CCCCccchhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccChhhhhccccccccChhhhhhcCCccc
Q psy5227 440 PEIMPQYKSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519 (693)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~R~~~~G~l~~~~a~~~g~~Gp 519 (693)
+++ +++++.+.++.+++.++++.+++.+|+++.+|++|+|+++.++|.++|++||
T Consensus 169 ~~~-------------------------~~~~i~~~l~~~~~~~~~~~~l~~~n~~~~~R~~gvGvl~~~~A~~~g~~GP 223 (394)
T PRK07415 169 PYG-------------------------WLEKCLDFCDYFGPKIDEYEKLITNNPIFRRRIEGLGTISREEAINWGLSGP 223 (394)
T ss_pred CHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHhCCchHHHhcCCEeecCHHHHHHhCCcCc
Confidence 988 8999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccCCCCCcCCcccccccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccCCC-cccchhh
Q psy5227 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKGPVISNNN-KITSPAR 598 (693)
Q Consensus 520 ~aRasG~~~D~R~~~py~~Y~~~~~~~~~~~~gd~~aR~~vR~~Ei~~s~~ii~q~l~~l~~~~g~~~~~~~-~~~~p~~ 598 (693)
++||||+++|+|++.||..|++++|+++++++||+|||++||+.|+.||++||+|+++++| +|++..... ...+|++
T Consensus 224 ~aRASGv~~D~R~~~pY~~Y~~l~f~v~v~~~GD~~aR~~VR~~Ei~eSi~II~q~l~~lp--~G~~~~~~~~~~~~~~~ 301 (394)
T PRK07415 224 MLRASGVKWDLRKVDHYECYDDFDWDVAWETEGDCLARYRVRIEEMRESVKIIRQACKGIP--GGPYENLEAKRMAEGKK 301 (394)
T ss_pred eeeeccCchhhccCCCcccccccCcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCcccccccccCCcch
Confidence 9999999999999999999999999999999999999999999999999999999999999 888654321 2233322
Q ss_pred hhhchhhhhhhhhh---cccccccccCcceEEEEeeCCcceeEEEEEECCCCceeEEEEeCCcccCHHHHHHHHcCCChh
Q psy5227 599 INMKSNMEDLIHHF---KLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMIS 675 (693)
Q Consensus 599 ~~~~~~~~~~i~~~---~~~~~~~~~~~Geg~g~vEapRG~L~h~v~~d~~g~i~r~~i~~PS~~N~~~le~~l~G~~i~ 675 (693)
.+. ++++.+| +... ++++|.|++++.+|||||+++||+++|++++|+|++||+|||.||++++.+++|+.++
T Consensus 302 ~~~----~~~~~~~~~~~~~~-~~~~p~ge~~~~vEapRGel~~~v~sdg~~~p~R~kiR~PSf~n~~~l~~~~~G~~ia 376 (394)
T PRK07415 302 SEW----NGFDYQYVAKKVAP-TFKIPNGELYVRLESGKGELGIFIQGNNDVTPWRWKIRAADFNNLQILPHLLKGAKVA 376 (394)
T ss_pred hhh----hhhhhhhccccccc-cccCCCceEEEEEecCCceEEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHCCCeec
Confidence 222 4455554 3332 3567899999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhcccccccccCCC
Q psy5227 676 DVVTIIGTQDIVFGEIDR 693 (693)
Q Consensus 676 d~~~ii~S~DpC~sc~dr 693 (693)
|+++|++|+|||++|+||
T Consensus 377 D~~~i~~S~D~~~~~~DR 394 (394)
T PRK07415 377 DIMAILGSIDVIMGSVDR 394 (394)
T ss_pred hHHHHhcCcCCCcCCcCC
Confidence 999999999999999998
No 9
>COG3261 HycE Ni,Fe-hydrogenase III large subunit [Energy production and conversion]
Probab=100.00 E-value=3.2e-90 Score=715.01 Aligned_cols=362 Identities=32% Similarity=0.485 Sum_probs=344.2
Q ss_pred hhccccccCcccCCCCccceEEEEEEcCCeEEEEEeeeccchhhHHHHhhCCCcCccccccccccccchhhHHHHHHHHH
Q psy5227 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAI 358 (693)
Q Consensus 279 ~~~~~~~~~GP~hp~~~G~~r~~l~v~Ge~I~~~~~~~g~~hRG~Ekllegr~~~~a~~l~~RIcGic~~ah~~A~~~Av 358 (693)
+.+.+++|+||+||+..++.+|++.++||+|+++++++||.||||||+++|+++.++..+++||||+||.+|++||++|+
T Consensus 5 ~~g~~~ip~GP~H~gl~EP~~frl~v~GE~Iv~~di~~~y~hRGIEki~~g~~~~~a~~LaERVcGicS~aH~~~f~~av 84 (382)
T COG3261 5 GEGEFEIPVGPVHPGLIEPGHFRLFVDGEKIVDADIRLGYVHRGIEKIAEGLPYNKALFLAERVCGICSFAHAVAFVLAV 84 (382)
T ss_pred CCceEEEecCCCCccccCCceEEEEeCCceEEEEEEEEEEeehhhHHHhcCCCHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHccCCccCCceeeCccccC
Q psy5227 359 EKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRD 438 (693)
Q Consensus 359 E~a~gievp~ra~~lR~ll~elerI~sHl~~lg~~~~~~g~~~~~~~~~~~Re~~~~i~~~~~G~r~~~~~~~pGGv~~~ 438 (693)
|+++|||+|+|||++|.|++|||||||||++++.++.++|+.+.+++++.+||.++++++.+||+|...+++++|||++|
T Consensus 85 E~~~~IEvPera~~iRai~~ELERihSHLl~l~~~~~~vg~~t~~~~~~~~RE~vm~~~e~iTG~R~~~G~n~iGGVr~D 164 (382)
T COG3261 85 EDALGIEVPERAQYIRAIILELERIHSHLLNLGLLCHDVGFETGFMQFFRLREKVMRLIELLTGNRVLYGLNVIGGVRRD 164 (382)
T ss_pred HHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccHHHHHHHHHHHHHHHHHHHHhCcceeeccceecceecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccchhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccChhhhhccccccccChhhhhhcCCcc
Q psy5227 439 LPEIMPQYKSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518 (693)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~R~~~~G~l~~~~a~~~g~~G 518 (693)
+++. .+..+.++++.+++.++++.+.++.+|.+.+|++++|+++.++|.+++++|
T Consensus 165 i~~~-------------------------~~~~~~~~i~~~~~e~~~~~e~~l~~p~i~~R~~~vGvi~~~~a~~~~~vG 219 (382)
T COG3261 165 ILES-------------------------DLEQILELIEDIREEVKEIVEVLLSDPNIEDRLQGVGVLDKEDARKLSAVG 219 (382)
T ss_pred ccHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHhccCcccCHHHHHHhccCC
Confidence 9888 677888999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccCCCCCcCCcccccccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccCCCcccchhh
Q psy5227 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKGPVISNNNKITSPAR 598 (693)
Q Consensus 519 p~aRasG~~~D~R~~~py~~Y~~~~~~~~~~~~gd~~aR~~vR~~Ei~~s~~ii~q~l~~l~~~~g~~~~~~~~~~~p~~ 598 (693)
|++||||++.|.|.++|+..|++++|++.+.++||+++|++||..|+.+|+++|+|+++++| +++-....+.
T Consensus 220 P~aRaSGi~~D~R~d~~~~~y~~l~f~~i~~~eGDvfaR~~VR~~Ei~~S~~lI~~~ld~lp--~~~~~~~~~~------ 291 (382)
T COG3261 220 PTARASGIADDARIDHPPVYYDELPFEVIVRDEGDVFARFLVRIDEIFESLKLIEQALDNLP--GGPGGLLREK------ 291 (382)
T ss_pred chhhccCCcchhhcccCCcccCCCCccceeccCccHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCCcccccc------
Confidence 99999999999999999999999999999999999999999999999999999999999999 5531111111
Q ss_pred hhhchhhhhhhhhhccccccccc-CcceEEEEeeCCcceeEEEEEECCCCceeEEEEeCCcccCHHHHHHHHcCCChhhH
Q psy5227 599 INMKSNMEDLIHHFKLFTEGFYV-PLGEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDV 677 (693)
Q Consensus 599 ~~~~~~~~~~i~~~~~~~~~~~~-~~Geg~g~vEapRG~L~h~v~~d~~g~i~r~~i~~PS~~N~~~le~~l~G~~i~d~ 677 (693)
+.. ..|+|.+.+|||||++.||++++++|+|+|++|||||+.||++++.|+.|+.++|+
T Consensus 292 --------------------~~~~~~g~g~~~vEApRGel~h~v~l~~~g~i~r~~irtPS~~Nl~a~~~ml~g~~V~Da 351 (382)
T COG3261 292 --------------------LELKGHGEGLGRVEAPRGELVHYVKLGDNGKIKRWKIRTPSYANLPALKYMLRGNTVADA 351 (382)
T ss_pred --------------------eeecCCcceeeeeecCCCcEEEEEEecCCCeEEEEEEcCCcccCHHHHHHHhCCCcccch
Confidence 111 34999999999999999999998889999999999999999999999999999999
Q ss_pred HHHhcccccccccCCC
Q psy5227 678 VTIIGTQDIVFGEIDR 693 (693)
Q Consensus 678 ~~ii~S~DpC~sc~dr 693 (693)
++++.|||||+||+||
T Consensus 352 ~l~~~S~dpc~sctdr 367 (382)
T COG3261 352 PLIIASLDPCYSCTDR 367 (382)
T ss_pred hhhhhccCcceeccee
Confidence 9999999999999998
No 10
>KOG2870|consensus
Probab=100.00 E-value=3e-87 Score=670.10 Aligned_cols=401 Identities=61% Similarity=1.080 Sum_probs=391.2
Q ss_pred CCCCCCCCCCcch----hhccccccCcccCCCCccceEEEEEEcCCeEEEEEeeeccchhhHHHHhhCCCcCcccccccc
Q psy5227 266 FVGHPFRKDFPVI----EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDR 341 (693)
Q Consensus 266 ~~~~plrk~~~~~----~~~~~~~~~GP~hp~~~G~~r~~l~v~Ge~I~~~~~~~g~~hRG~Ekllegr~~~~a~~l~~R 341 (693)
|...|+.+.+..+ +...+.+||||+||+.||.+|+.++++||.|.++++++|+.|||.||+.|.|++.|++++.+|
T Consensus 48 w~~pp~~~~~~~k~~~~~~~n~~~NfGPqHPaaHGVlRlvleldgE~V~~a~PhiGlLHRgtEKliEykty~QaLPYfdR 127 (452)
T KOG2870|consen 48 WKDPPWNDNYTMKPRETGKRNMILNFGPQHPAAHGVLRLVLELDGEVVVKAEPHIGLLHRGTEKLIEYKTYTQALPYFDR 127 (452)
T ss_pred cCCCCCcCCCcCCCcccchhheeeccCCCCcchhchhheeeeecCceeeecccchhhhhhhHHHHHHHHHHHhhcccchH
Confidence 6667777776532 346799999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHc
Q psy5227 342 LDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLLYAFREREDLLDCYEAVS 421 (693)
Q Consensus 342 IcGic~~ah~~A~~~AvE~a~gievp~ra~~lR~ll~elerI~sHl~~lg~~~~~~g~~~~~~~~~~~Re~~~~i~~~~~ 421 (693)
.++++.++++.|++.|+|++++|+||.||+|||+|+.|+.||+||+++++.++.|+|+.++++|.|+.||++.+..|.++
T Consensus 128 lDYvsmM~nE~a~slavEkLlni~vP~RA~yIRvlf~EitRi~nH~malgt~alDvGA~TPffw~FeEREkl~ef~Ervs 207 (452)
T KOG2870|consen 128 LDYVSMMCNEQAYSLAVEKLLNIDVPLRAKYIRVLFGEITRIANHIMALGTHALDVGAMTPFFWLFEEREKLYEFYERVS 207 (452)
T ss_pred HHHHHHHHHHHHHHhhHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHhhcchhhccccccchhhhhHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCCceeeCccccCCCCCCccchhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccChhhhhccc
Q psy5227 422 GARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLV 501 (693)
Q Consensus 422 G~r~~~~~~~pGGv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~R~~ 501 (693)
|+|+|.++++||||+.|+|-+ +.+++.++++.+...++++.+++..|++|..|..
T Consensus 208 GaRmha~yiRpGGva~DlPlG-------------------------~~ddi~~f~~~F~~rldE~e~~~T~NrIw~~R~~ 262 (452)
T KOG2870|consen 208 GARMHANYIRPGGVAQDLPLG-------------------------LMDDIYDFCDQFAERLDELEDMLTRNRIWKQRTI 262 (452)
T ss_pred hhHhHHhhcCCCcccccCCch-------------------------HHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhcc
Confidence 999999999999999999998 9999999999999999999999999999999999
Q ss_pred cccccChhhhhhcCCcccccCCCCccCCCCCcCCcccccccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy5227 502 GIGVVSPERALSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRS 581 (693)
Q Consensus 502 ~~G~l~~~~a~~~g~~Gp~aRasG~~~D~R~~~py~~Y~~~~~~~~~~~~gd~~aR~~vR~~Ei~~s~~ii~q~l~~l~~ 581 (693)
++|+++.++|+.||++||++||||++||+||.+||..|++++|++|+++.||+|+|+++|+.|++||++||.|||+.+|
T Consensus 263 ~iGiv~aeeAlnwGfSG~mlRgsGi~wDlRk~~pYd~yd~~efdv~vgt~GDcydRYl~R~eEMrqSl~II~Qcln~mP- 341 (452)
T KOG2870|consen 263 DIGIVTAEEALNWGFSGVMLRGSGIKWDLRKTQPYDAYDEMEFDVPVGTKGDCYDRYLCRVEEMRQSLRIIQQCLNKMP- 341 (452)
T ss_pred ccceeeHHHhhccCCcceeeccCCCCchhhccCcccchhhceeccccccCcchHHHHHHhHHHHHHHHHHHHHHHhcCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCCcccchhhhhhchhhhhhhhhhcccccccccCcceEEEEeeCCcceeEEEEEECCCCceeEEEEeCCcccC
Q psy5227 582 NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAH 661 (693)
Q Consensus 582 ~~g~~~~~~~~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~Geg~g~vEapRG~L~h~v~~d~~g~i~r~~i~~PS~~N 661 (693)
.|++++++....+|+..+++.++|++|+||+.++.|+.+|+|+-|.+||||+|+++.++.+|++|++||++|++|+|.|
T Consensus 342 -~Geik~dd~k~~ppkR~~mk~~mE~lihhfk~~t~gf~vppg~tY~avEaPKGEfGvfLisdgS~rPyRckIrapgfah 420 (452)
T KOG2870|consen 342 -PGEIKVDDSKVCPPKRAEMKESMESLIHHFKLFTEGFQVPPGATYVAVEAPKGEFGVFLISDGSGRPYRCKIRAPGFAH 420 (452)
T ss_pred -CCcccccccccCCcccchhhhhhHHHhhhccccCcccccCCCceeEEeecCCCceeEEEEecCCCCceeeeecCCchHH
Confidence 9999999988899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCChhhHHHHhcccccccccCCC
Q psy5227 662 LQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693 (693)
Q Consensus 662 ~~~le~~l~G~~i~d~~~ii~S~DpC~sc~dr 693 (693)
+++|+++.+.+.++|+..|++|+|..++++||
T Consensus 421 la~l~~m~k~h~lADvvaIiGt~DIvfGEvDR 452 (452)
T KOG2870|consen 421 LAALDKMSKRHMLADVVAIIGTLDIVFGEVDR 452 (452)
T ss_pred HHHHHHHHHhhhHHHHHHhhccceeeeeccCC
Confidence 99999999999999999999999999999998
No 11
>TIGR03295 frhA coenzyme F420 hydrogenase, subunit alpha. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein is a member of the Nickel-dependent hydrogenase superfamily represented by Pfam model, pfam00374.
Probab=100.00 E-value=2.4e-67 Score=578.64 Aligned_cols=351 Identities=17% Similarity=0.141 Sum_probs=307.7
Q ss_pred ccCcccCCCCccceEEEEEEcCCe-EEEEEeeeccchhhHHHHhhCCCcCccccccccccccchhhHHHHHHHHHHHHcC
Q psy5227 285 LNFGPQHPAAHGVLRLILELEGEV-VRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLN 363 (693)
Q Consensus 285 ~~~GP~hp~~~G~~r~~l~v~Ge~-I~~~~~~~g~~hRG~Ekllegr~~~~a~~l~~RIcGic~~ah~~A~~~AvE~a~g 363 (693)
+.+.|+- =+|||+++.+.++|+. |.++.+..+..||||||+++||++.|++++++||||+|+++|++||++|+|+++|
T Consensus 5 i~i~p~t-RiEG~~rl~l~vdge~vv~~~~~~~~~~~RG~Ek~~egr~~~~~~~l~~Ricg~c~~ah~~a~~~AvE~a~g 83 (411)
T TIGR03295 5 IEISPTT-RHEGHAKLVLEVDDEGIVEKGDYLSITPVRGFEKLLVGKTAEFAPIIVSRICGICPIAHTLASVEAIEDSID 83 (411)
T ss_pred EEeCCcc-ccccceEEEEEEeCCCcEEEEEEeccCcCcHHHHHHcCCCHHHHHHHHhHHhhcCHHHHHHHHHHHHHHHhC
Confidence 5566664 3599999999999855 5556578889999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhHHH-----HHHHHHHHHHHHHHHHHHccCCccCCceeeCccc
Q psy5227 364 IKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDI--GAMGV-----LLYAFREREDLLDCYEAVSGARMHAAYYRPGGVY 436 (693)
Q Consensus 364 ievp~ra~~lR~ll~elerI~sHl~~lg~~~~~~--g~~~~-----~~~~~~~Re~~~~i~~~~~G~r~~~~~~~pGGv~ 436 (693)
+++|++|+++|+|+.|+|||+||+++++..+.|+ |..+. +++++++||.++++++.+||+|+|+++++||||+
T Consensus 84 i~vp~ra~~lR~l~~e~~ri~sHll~~~~~~~d~~~g~~~~~~~~~~~~~~~~Re~~~~i~e~i~G~r~h~~~~~pGGv~ 163 (411)
T TIGR03295 84 CEVPKDGLLLRELTGCANRLHSHALHHFLIAPDFIPETDTKLVREVIKRIQRMRKIGQTVVDIVGGEGIHPPNIRIGGMY 163 (411)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCChhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeecCCCC
Confidence 9999999999999999999999999998888888 55443 4699999999999999999999999999999999
Q ss_pred cCCCCCCccchhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccChhhhhccccccccChhhhhhcC-
Q psy5227 437 RDLPEIMPQYKSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMG- 515 (693)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~R~~~~G~l~~~~a~~~g- 515 (693)
+|++.+ +++++.+.++.+++.++++.+++.. .+.+|+.|+|.++...+..++
T Consensus 164 ~d~~~~-------------------------~~~~l~~~l~~~~~~~~~~~~~~~~--~~~~~~~g~g~~~~~~~~~~~~ 216 (411)
T TIGR03295 164 YNITEQ-------------------------AKSRLYYLLKQYEPLAIEHVEFMIA--LIENGKTEVGIPEKLGWHDQPY 216 (411)
T ss_pred CCCCHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhcccCcccceecccccc
Confidence 999887 7888889999999999998888774 678889999999999888886
Q ss_pred -CcccccCCCCccCCCCC---cCCccccccccccc------ccC-------------------CCCChHHHHHHHHHHHH
Q psy5227 516 -FTGPMLRGSGVKWDLRK---KQPYEIYNLLNFDI------PIG-------------------KNGDSYDRYLVRIEEMR 566 (693)
Q Consensus 516 -~~Gp~aRasG~~~D~R~---~~py~~Y~~~~~~~------~~~-------------------~~gd~~aR~~vR~~Ei~ 566 (693)
.+||.. +++.++|.|+ ..||.+|++.+++. |.. ..+|+++|+++|+.|+.
T Consensus 217 ~a~G~~~-~~~~~~d~~~~~e~~~~~~Y~~~~~~~~s~~k~p~~~g~~~~vGplAR~~~~~~~~~~~~~aR~~aR~~E~~ 295 (411)
T TIGR03295 217 IATHPTY-GDRPKIDPDRVTEVSPYNWYDDAEYAMQACTTIPLYDGRPVEVGPRARMVKFKNFKEKGAMAIHIARAMENP 295 (411)
T ss_pred CCCcccc-CCCCCCCHHHceecccchhcccCCcCCCeeeeceeECCceEEecHHHHHHhcchhhhccccccHHHHHHHHH
Confidence 779988 8888999977 56899999887765 222 45789999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCcccCCCcccchhhhhhchhhhhhhhhhcccccccccCcceEEEEeeCCcceeEEEEEECCC
Q psy5227 567 QSNKIIKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGA 646 (693)
Q Consensus 567 ~s~~ii~q~l~~l~~~~g~~~~~~~~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~Geg~g~vEapRG~L~h~v~~d~~ 646 (693)
+|+++|+|++++++. +|+..... .| ....|+|+|++|||||+|+||++++ +
T Consensus 296 ~s~~~i~~~l~~~~~-~~~~~~~~----~~-----------------------~~~~~~g~g~vEApRG~L~H~~~i~-~ 346 (411)
T TIGR03295 296 DALYRAIEILDELDC-NGKVRADE----IE-----------------------QGDGKLGWGAHEAPRGCDVHMARVK-D 346 (411)
T ss_pred HHHHHHHHHHHhHHh-hCCccccC----CC-----------------------CCCCceeEEEEEcCCcceeEEEEEc-C
Confidence 999999999999852 34432110 00 0023489999999999999999997 8
Q ss_pred CceeEEEEeCCcccCHHHHHHHHcCCChhhHHHHhcccccccccCCC
Q psy5227 647 NKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693 (693)
Q Consensus 647 g~i~r~~i~~PS~~N~~~le~~l~G~~i~d~~~ii~S~DpC~sc~dr 693 (693)
|+|.+|+|++||+|||++++++++|..++|+++|+||||||+||+||
T Consensus 347 G~i~~y~i~~PT~~N~~~le~~l~G~~~~~~~~iirS~DPC~sC~~h 393 (411)
T TIGR03295 347 GKIQEYTALVPTTWNFPTCGKATEGAPWQYAEVIMRAYDPCVSCATH 393 (411)
T ss_pred CEEeEEeEECCcccccHHHHHHHHhhhhhchhhEeecCCccHhhhhh
Confidence 99999999999999999999999999999999999999999999986
No 12
>PF00346 Complex1_49kDa: Respiratory-chain NADH dehydrogenase, 49 Kd subunit; InterPro: IPR001135 This entry represents subunit D (NuoD) of NADH-quinone oxidoreductase (1.6.99.5 from EC), and subunit H (NdhH) of NAD(P)H-quinone oxidoreductase (1.6.5.- from EC). NADH-quinone (Q) oxidoreductase is a large and complex redox proton pump, which utilises the free energy derived from oxidation of NADH with lipophilic electron/proton carrier Q to translocate protons across the membrane to generate an electrochemical proton gradient []. Subunit D (NuoD) is a 49kDa polypeptide that appears to be evolutionarily important in determining the physiological function of complex I/NDH-1 [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0048038 quinone binding, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2FUG_V 3M9S_4 3I9V_4 3IAS_4 3IAM_4 2YBB_4.
Probab=100.00 E-value=1.1e-62 Score=509.20 Aligned_cols=271 Identities=53% Similarity=0.964 Sum_probs=228.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHccCCccCCceeeCccccCCCCCCccchhhhhhhhhhhhhhhhhhhhhHHHHHHHH
Q psy5227 396 DIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENRQGSLLDFIEDF 475 (693)
Q Consensus 396 ~~g~~~~~~~~~~~Re~~~~i~~~~~G~r~~~~~~~pGGv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 475 (693)
|+|+.++++|+|+.||++++++|.+||+|+|+++++||||++|++.+ +++++.++
T Consensus 1 D~G~~t~f~~~~~~RE~il~l~e~~tG~R~~~~~~~~GGV~~Dl~~~-------------------------~~~~i~~~ 55 (272)
T PF00346_consen 1 DLGAMTPFMYAFREREKILDLFERITGNRMHRSYIRPGGVRRDLPDG-------------------------WLEDILEF 55 (272)
T ss_dssp HTT-HHHHHHHHHHHHHHHHHHHHHHSSSSS-TTBESSBBSS---TT-------------------------HHHHHHHH
T ss_pred CcCcccHHHHHHHHHHHHHHhcCcccceeeeecCCCccCccccCchh-------------------------HHHHHHHH
Confidence 68999999999999999999999999999999999999999999998 89999999
Q ss_pred HHHHHHHHHHHHHHhccChhhhhccccccccChhhhhhcCCcccccCCCCccCCCCCcCCcccccccccccccCCCCChH
Q psy5227 476 TNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSY 555 (693)
Q Consensus 476 l~~~~~~~~~~~~~~~~~~~~~~R~~~~G~l~~~~a~~~g~~Gp~aRasG~~~D~R~~~py~~Y~~~~~~~~~~~~gd~~ 555 (693)
++.+++.++++.+++.+|+++.+|++|+|+++.++|.++|++||++||||+++|+|++.||..|++++|+++++..||+|
T Consensus 56 l~~~~~~~~~~~~l~~~n~~~~~R~~gvGvls~e~A~~~g~~Gp~~RASGv~~D~R~~~pY~~Y~~l~f~v~~~~~GD~~ 135 (272)
T PF00346_consen 56 LDEFEKRVEEYEDLLLDNPIFRDRLRGVGVLSAEDALDLGAVGPVARASGVPYDLRKDEPYAAYDELDFEVPTETEGDVY 135 (272)
T ss_dssp HHHHHHHHHHHHHHHHSSSCHHHHHSSSS-BSHHHHHHHTT-SSSSGGGT-TTTHHHHSS-SSGGGS-------SSBSHH
T ss_pred HHHHHHHHHHHHHhhccCcchhhccCCEeEECHHHHHHhcCCCcccccCCCcccccccCCCCCcccceeeeeeccCCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCC-cccCCCcccchhhhhhchhhhhhhhhhcccccccccCcceEEEEeeCCc
Q psy5227 556 DRYLVRIEEMRQSNKIIKQCIKWLRSNKGP-VISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPK 634 (693)
Q Consensus 556 aR~~vR~~Ei~~s~~ii~q~l~~l~~~~g~-~~~~~~~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~Geg~g~vEapR 634 (693)
||++||+.|+.||++||+|+++++| +|+ +....+...+|++.+++..+|++|+||+++..++++|.||+|+.+||||
T Consensus 136 aR~~VR~~Ei~eSl~iI~q~l~~lp--~g~~~~~~~~~~~~p~~~~~~~~~e~li~~f~~~~~~~~~p~Ge~~~~vE~pr 213 (272)
T PF00346_consen 136 ARFLVRIEEIRESLRIIEQALDRLP--EGPIINVDDPKLAPPSKEEVYNSMESLIHHFKLVSEGFKVPAGEAYARVEAPR 213 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-----S--SB---TTTS---GGGGGT-HHHHHHHHHHHHS-----SEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc--cCCceeccccccccccchhhccccchhhhcceeccCCccCCcccEEEEecCCC
Confidence 9999999999999999999999999 888 5777888888889999999999999999999999999999999999999
Q ss_pred ceeEEEEEECCCCceeEEEEeCCcccCHHHHHHHHcCCChhhHHHHhcccccccccCCC
Q psy5227 635 GEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693 (693)
Q Consensus 635 G~L~h~v~~d~~g~i~r~~i~~PS~~N~~~le~~l~G~~i~d~~~ii~S~DpC~sc~dr 693 (693)
|+++||+++|++++|+|+|||+|||.||++|+++++|+.++|++.|++|+|||++|+||
T Consensus 214 Ge~g~~~~sdg~~~p~R~kiR~psf~n~~~l~~~~~G~~laD~~~i~~Sld~~~~e~DR 272 (272)
T PF00346_consen 214 GELGYYLVSDGSGKPYRVKIRTPSFANLQALPEMLRGNRLADVVAIIGSLDPCMGEVDR 272 (272)
T ss_dssp EEEEEEEEEESSSS-SEEEEE-HHHHTTTTHTTTTTTS-SGGGTHHHHTT---HHHHH-
T ss_pred cceEEEEEECCCCcceEEEEeCccHhHHHHHHHHcCCCChhHHHHHHhccCcccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999998
No 13
>PRK10467 hydrogenase 2 large subunit; Provisional
Probab=100.00 E-value=4.2e-52 Score=465.98 Aligned_cols=366 Identities=19% Similarity=0.186 Sum_probs=248.7
Q ss_pred ccCcccCCCCccceEEEEEEcCCeEEEEEeeeccchhhHHHHhhCCCcCccccccccccccchhhHHHHHHHHHHHHcCC
Q psy5227 285 LNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNI 364 (693)
Q Consensus 285 ~~~GP~hp~~~G~~r~~l~v~Ge~I~~~~~~~g~~hRG~Ekllegr~~~~a~~l~~RIcGic~~ah~~A~~~AvE~a~gi 364 (693)
+.+.|+.- +|||+++++.++|++|++++. .+++||||||+++||++.|++.+++||||+|+++|++|+++|||+|+|+
T Consensus 5 i~i~p~tR-iEG~lri~v~vd~g~V~~a~~-~g~~~RGiEkileGR~p~dal~l~~RICGiC~~aH~~A~~~AlE~a~gi 82 (567)
T PRK10467 5 ITIDPVTR-IEGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHAISSVRAAESALNI 82 (567)
T ss_pred EEeCCcce-eeeEEEEEEEEECCEEEEEEE-cCcccCcHHHHHcCCCHHHHHHHhchhceeCHHHHHHHHHHHHHHHcCC
Confidence 56777653 599999999999999999995 7789999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhHH------------------------------------------
Q psy5227 365 KIPIRAQYIRVMFDEITRLLNHLMWIG-SHSLDIGAMG------------------------------------------ 401 (693)
Q Consensus 365 evp~ra~~lR~ll~elerI~sHl~~lg-~~~~~~g~~~------------------------------------------ 401 (693)
++|++|+++|+|++|+|||+||++|++ +++.|++..+
T Consensus 83 ~vP~~A~~iR~l~~e~eri~sHl~hfy~l~~~D~~~~t~~l~a~~e~~~~l~~~~~~~p~~~~~~~~~v~~~~~~~~~~g 162 (567)
T PRK10467 83 DVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASAMLKGVSTWHLNSAEEFTKVQNKIKDLVASG 162 (567)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999887 4455554321
Q ss_pred ---------------------------HHHHHHHHHHHHHHHHHHHccCCccCCceeeCccccCCCCCCccchhhhhhhh
Q psy5227 402 ---------------------------VLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNN 454 (693)
Q Consensus 402 ---------------------------~~~~~~~~Re~~~~i~~~~~G~r~~~~~~~pGGv~~~~~~~~~~~~~~~~~~~ 454 (693)
.+..+++++.++.+++++++|+.+|+++++||||+++++....++
T Consensus 163 ~l~~f~~~y~g~~~y~l~~e~n~~~~~hYl~Al~~~r~~~~~~aifgGK~PH~~~~vpGGvt~~~~~~~~~~-------- 234 (567)
T PRK10467 163 QLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGV-------- 234 (567)
T ss_pred ccCcccCCCCCCccccCChhHhHHHHHHHHHHHHHHHHHHHheEEeecCCCCCCCeecCccccccccccccC--------
Confidence 344788889999999999999999999999999999965220000
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHH-HHHHHHHhccChhhhh------ccccccccChh-hhhhc-CCcccccCCCC
Q psy5227 455 KATKILNENRQGSLLDFIEDFTNRFPKN-IDEYETLLTDNRIWKQ------RLVGIGVVSPE-RALSM-GFTGPMLRGSG 525 (693)
Q Consensus 455 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~------R~~~~G~l~~~-~a~~~-g~~Gp~aRasG 525 (693)
++..++...+..++++.++++.. +.++..+....+.|.+ ++...|-++.. .-..+ -..|....+.-
T Consensus 235 -----~~~~~l~~~~~~~~~~~~fve~~~~~d~~~~~~~~~~~~~~G~g~~~fls~g~~~~~~~~~~~~~~~Gv~~~g~~ 309 (567)
T PRK10467 235 -----LNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGYIENADL 309 (567)
T ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHhCCCcceEEEcCCccCCCCCCceecCCeEEECCcc
Confidence 11122222444444445555444 2222222211222221 12222211100 00000 00010000000
Q ss_pred ---ccCCCC----------------------CcCC-----------------ccc-----ccccccccc-------c---
Q psy5227 526 ---VKWDLR----------------------KKQP-----------------YEI-----YNLLNFDIP-------I--- 548 (693)
Q Consensus 526 ---~~~D~R----------------------~~~p-----------------y~~-----Y~~~~~~~~-------~--- 548 (693)
.++|.. ..+| |.+ |+...+++- .
T Consensus 310 ~~~~~~D~~~~~~~~~~I~E~v~~swY~~~~~~hP~~g~T~P~~~~~~~~~~YSW~KaPRy~g~~~EvGPLAR~lv~~~~ 389 (567)
T PRK10467 310 STYRPITSHSDEYLIKGIQESAKHAWYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAA 389 (567)
T ss_pred cceeccCcccccccccceEEecceecccCCCCCCCCCCCccCCCCCCCCCCCcccccCcccCCcccccCHHHHHHHHhhc
Confidence 000000 0011 221 333333320 0
Q ss_pred CC--------------------------CCChHHHHHHHHHHHHHHHHHH----HHHHHhcccCCCCcccCCCcccchhh
Q psy5227 549 GK--------------------------NGDSYDRYLVRIEEMRQSNKII----KQCIKWLRSNKGPVISNNNKITSPAR 598 (693)
Q Consensus 549 ~~--------------------------~gd~~aR~~vR~~Ei~~s~~ii----~q~l~~l~~~~g~~~~~~~~~~~p~~ 598 (693)
+. ..+.++|+++|+.|....+..+ .+++++++ .|+.....+ ...|
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~st~gR~~AR~~e~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~-~~~~-- 464 (567)
T PRK10467 390 GRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIG--KGDHTTFVK-PNIP-- 464 (567)
T ss_pred cCcchhhhhhHHHHHhhhccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCccccCc-CcCC--
Confidence 00 1226679999999977666555 35566665 454322111 0011
Q ss_pred hhhchhhhhhhhhhcccccccccCcceEEEEeeCCcceeEEEEEECCCCceeEEEEeCCcccCH---------HHHHHHH
Q psy5227 599 INMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHL---------QSLSEMI 669 (693)
Q Consensus 599 ~~~~~~~~~~i~~~~~~~~~~~~~~Geg~g~vEapRG~L~h~v~~d~~g~i~r~~i~~PS~~N~---------~~le~~l 669 (693)
....++|+|++|||||+|+||+++++ |+|.+|+|++||+||+ +++|++|
T Consensus 465 ---------------------~~~~~~G~G~~EApRG~L~Hwi~i~~-gkI~nyqii~PTtwN~sPRD~~g~~g~~e~aL 522 (567)
T PRK10467 465 ---------------------ATGEFKGVGFLEAPRGMLSHWMVIKD-GIISNYQAVVPSTWNSGPRNFNDDVGPYEQSL 522 (567)
T ss_pred ---------------------CCcceeEEEEEEccCcceEEEEEEcC-CeEEEEEEECCCcccCCccccCCCcchHHHHh
Confidence 00234699999999999999999975 9999999999999999 7999999
Q ss_pred cCCChhh------HHHHhcccccccccCC
Q psy5227 670 SGHMISD------VVTIIGTQDIVFGEID 692 (693)
Q Consensus 670 ~G~~i~d------~~~ii~S~DpC~sc~d 692 (693)
.|+.++| +.+++||||||++|++
T Consensus 523 ~G~~i~d~~~P~Ev~~iirSfDPC~aCav 551 (567)
T PRK10467 523 VGTPVADPNKPLEVVRTIHSFDPCMACAV 551 (567)
T ss_pred CCCccCCCCCcceeeeeeEecccccccce
Confidence 9999999 9999999999999985
No 14
>COG3259 FrhA Coenzyme F420-reducing hydrogenase, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=4.9e-51 Score=430.10 Aligned_cols=347 Identities=19% Similarity=0.169 Sum_probs=249.8
Q ss_pred CccceEEEEEEcC-CeEEEEEeeeccchhhHHHHhhCCCcCccccccccccccchhhHHHHHHHHHHHHcCCCCChhhHH
Q psy5227 294 AHGVLRLILELEG-EVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQY 372 (693)
Q Consensus 294 ~~G~~r~~l~v~G-e~I~~~~~~~g~~hRG~Ekllegr~~~~a~~l~~RIcGic~~ah~~A~~~AvE~a~gievp~ra~~ 372 (693)
++||+.+.+.+++ +.|.++.+. ...+|||||+++||++++++.+++||||+|+++|.+|+++|+|+++|+|+|+.+++
T Consensus 13 iEGhakv~i~vdd~G~V~~~~~~-it~~RgfEk~~~Gkp~EeaP~i~~RICgiC~~sH~LAs~eA~e~a~gveip~~~~~ 91 (441)
T COG3259 13 IEGHAKVTIEVDDDGIVEDARFH-ITEVRGFEKFVLGKPIEEAPRIVPRICGICPASHHLASVEAAEAALGVEIPEEAEK 91 (441)
T ss_pred cCCceEEEEEEcCCCceeeeEEE-ecccchHHHHhcCCChHHhhHHhhhhhccChhHHHHHHHHHHHHhcCCcCChHHHH
Confidence 3999999999998 666777765 67889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hh-h-----------hHHHHHHHHHHHHHHHHHHHHHccCCccCCceeeCccccCC
Q psy5227 373 IRVMFDEITRLLNHLMWIGSHSL-DI-G-----------AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDL 439 (693)
Q Consensus 373 lR~ll~elerI~sHl~~lg~~~~-~~-g-----------~~~~~~~~~~~Re~~~~i~~~~~G~r~~~~~~~pGGv~~~~ 439 (693)
+|.||.-.++|+||.+|++.++. |+ + ....+..++++|+..+.++++++|+.+||.+.+|||+++++
T Consensus 92 LREl~~~g~~i~SHALh~y~La~PDfl~~~d~~~~~i~~~~e~~k~~i~Lr~~gq~Iv~~lGGk~IHp~~~~pGG~~~~l 171 (441)
T COG3259 92 LRELLNIGNIIESHALHLYFLAAPDFLGPPDADPGMIDEYPELAKEAIRLRKIGQTIVEVLGGKAIHPVNAVPGGVAKNL 171 (441)
T ss_pred HHHHHHHHHHHhhhHHHHHHhhCccccCCcccChhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCCCccCCCC
Confidence 99999999999999999987754 32 1 23588999999999999999999999999999999999999
Q ss_pred CCCCccchhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-----hccChh-----hhh--ccccccc-c
Q psy5227 440 PEIMPQYKSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETL-----LTDNRI-----WKQ--RLVGIGV-V 506 (693)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~~-----~~~--R~~~~G~-l 506 (693)
++. .+ .+-.+.+++ .++...+.++.+.+.++.+.+- ....+. +.+ |..+.+- +
T Consensus 172 see------~~---~~l~~~ake-----~~~lA~~~~e~~~~l~er~~~~~~~~~g~v~~g~~~~~y~~~~~~~d~~~~f 237 (441)
T COG3259 172 SEE------AR---EKLLDRAKE-----ALELADRTVELFKELLERMEEEESYHLGLVKKGDHPEPYDGSIRAYDDREKF 237 (441)
T ss_pred CHH------HH---HHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhcccceecccCCCcccccccceEEeccccccC
Confidence 887 11 111111111 2233333333333333332222 000000 000 1111000 1
Q ss_pred Chhhhhh-------------------c----CCcccccCCCCccCCCCCcCCccc--ccccccccccCCCCChHHHHHHH
Q psy5227 507 SPERALS-------------------M----GFTGPMLRGSGVKWDLRKKQPYEI--YNLLNFDIPIGKNGDSYDRYLVR 561 (693)
Q Consensus 507 ~~~~a~~-------------------~----g~~Gp~aRasG~~~D~R~~~py~~--Y~~~~~~~~~~~~gd~~aR~~vR 561 (693)
++++-.+ + ..+||++|-.|.+.- ..|++. |.++. .- ...+.+++++++|
T Consensus 238 d~~~y~d~i~E~~~~~s~~K~~y~k~lG~p~y~vg~larl~~~~~~---~~p~Ar~~~~e~~--~~-~g~~~~~~~h~AR 311 (441)
T COG3259 238 DPDEYEDIIPESVYPYSYLKHPYYKDLGYPDYRVGPLARLDGCPVM---VGPRARELYEENF--EE-LGGTHSFAYHLAR 311 (441)
T ss_pred CHHHHhhhcccccccchhhccccccccCCcccccccchhhcCCccc---cCcHHHHHHHHhH--Hh-hCCccHHHHHHHH
Confidence 1111111 0 124555554333211 112221 11110 00 1125689999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCcccCCCcccchhhhhhchhhhhhhhhhcccccccccCcceEEEEeeCCcceeEEEE
Q psy5227 562 IEEMRQSNKIIKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYL 641 (693)
Q Consensus 562 ~~Ei~~s~~ii~q~l~~l~~~~g~~~~~~~~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~Geg~g~vEapRG~L~h~v 641 (693)
+.|+..+++.+..+|+++.. .|+++.+ ..+..|+|+|++|||||+|+|++
T Consensus 312 aiEi~~~~e~a~~lL~~ld~-~~k~r~~-----------------------------~e~~~geGvg~vEAPRGtlvH~~ 361 (441)
T COG3259 312 AIEILYALERAIELLDELDI-TGKVRAD-----------------------------VEPKAGEGVGVVEAPRGTLVHHY 361 (441)
T ss_pred HHHHHHHHHHHHHHhhcccc-CCCcccc-----------------------------ccCCCCceeEEEecCcceEEEEE
Confidence 99999999999999998873 3333322 12257899999999999999999
Q ss_pred EECCCCceeEEEEeCCcccCHHHHHHHHcCCC-----------hhhHHHHhcccccccccC
Q psy5227 642 VSDGANKPYRIKIRSPGFAHLQSLSEMISGHM-----------ISDVVTIIGTQDIVFGEI 691 (693)
Q Consensus 642 ~~d~~g~i~r~~i~~PS~~N~~~le~~l~G~~-----------i~d~~~ii~S~DpC~sc~ 691 (693)
++|++|+|..++|++||+||.++|++++.+.. ++-+++++|+||||+||.
T Consensus 362 ~vdenG~I~~~niIvaT~~N~~ame~~v~~~a~~~~~~~~~~~~~~~E~viRAyDPC~sCa 422 (441)
T COG3259 362 RVDENGRIKKANIIVATTFNVPAMEKAVRGVAERYIETVPEGLLNLVEMVIRAYDPCLSCA 422 (441)
T ss_pred EEcCCCeEEEEEEEeecccchHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhhcCchHHHH
Confidence 99999999999999999999999999998632 444788999999999995
No 15
>PRK10170 hydrogenase 1 large subunit; Provisional
Probab=100.00 E-value=1.8e-50 Score=453.75 Aligned_cols=371 Identities=17% Similarity=0.213 Sum_probs=249.9
Q ss_pred cccCcccCCCCccceEEEEEEcCCeEEEEEeeeccchhhHHHHhhCCCcCccccccccccccchhhHHHHHHHHHHHHcC
Q psy5227 284 KLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLN 363 (693)
Q Consensus 284 ~~~~GP~hp~~~G~~r~~l~v~Ge~I~~~~~~~g~~hRG~Ekllegr~~~~a~~l~~RIcGic~~ah~~A~~~AvE~a~g 363 (693)
.+.+.|+-- +|||+++++.++||.|++..+.+|++|||||++++||++.|++.+++||||+|+++|++|+++|||+|+|
T Consensus 18 ~i~idpitR-iEGhlrv~v~vdge~vv~~a~~~g~~~RG~Ekil~GR~p~dal~iv~RICGiCs~aH~~A~~~AlE~A~g 96 (597)
T PRK10170 18 RLVVDPITR-IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIG 96 (597)
T ss_pred eEEeCCcce-eeeEEEEEEEEcCCcEEEEEEEecccccHHHHHHcCCCHHHHHHHhchhceeCHHHHHHHHHHHHHHHcC
Confidence 366778753 5999999999999888888889999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hh---------------------------------------------
Q psy5227 364 IKIPIRAQYIRVMFDEITRLLNHLMWIGSHSL-DI--------------------------------------------- 397 (693)
Q Consensus 364 ievp~ra~~lR~ll~elerI~sHl~~lg~~~~-~~--------------------------------------------- 397 (693)
+++|++|+++|+|++|+|||+||++||+.+.. |.
T Consensus 97 i~vP~~A~~lR~l~~e~erI~sHl~hfy~l~~pD~~~~~~alkadp~~~~~~a~~~~~~~~~~~~~~~~v~~r~~~~v~~ 176 (597)
T PRK10170 97 IKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEG 176 (597)
T ss_pred CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhhhhcChHHHHHHHhhccCCCCCChHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999987653 21
Q ss_pred -----------hh-------------HHHHHHHHHHHHHHHHHHHHHccCCccCCceeeCccccCCCCCCccchhhhhhh
Q psy5227 398 -----------GA-------------MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRN 453 (693)
Q Consensus 398 -----------g~-------------~~~~~~~~~~Re~~~~i~~~~~G~r~~~~~~~pGGv~~~~~~~~~~~~~~~~~~ 453 (693)
|+ ...++.++.++..+.+++++++|+.+|++ .+||||++.++.+..+
T Consensus 177 g~lgif~~~ywg~~~y~l~~e~n~~~~~hYl~Al~~qr~~~~~~aifGGK~PH~~-~~~GGvt~~~~~~~~~-------- 247 (597)
T PRK10170 177 GQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPN-WIVGGMPCAINIDESG-------- 247 (597)
T ss_pred cccccccCcCCCCccccCChhHhHHHHHHHHHHHHHHHHHHHHheEeecCCCCCC-cccCCCcccccccccc--------
Confidence 10 02345788899999999999999999999 6699999997642000
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHHH-HHHHHHHhccChhhhhc--------cccccccCh--hhh--hhcCCc-cc
Q psy5227 454 NKATKILNENRQGSLLDFIEDFTNRFPKN-IDEYETLLTDNRIWKQR--------LVGIGVVSP--ERA--LSMGFT-GP 519 (693)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~R--------~~~~G~l~~--~~a--~~~g~~-Gp 519 (693)
....++..++......+.++.++++.. +.++..+..-.+.|.+- +...|..+. ++. ..+-+. |.
T Consensus 248 --~~~~~~~~~l~~~~~~l~~~~~fve~~~~~d~~~i~~~~~~~~~~G~g~~~~~fls~G~f~~~~~~~~~~~~~~p~Gv 325 (597)
T PRK10170 248 --AVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGA 325 (597)
T ss_pred --ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhCCCCCCCcEEEecCCCCccccccccccccCCeE
Confidence 000011122222444455555555544 22322211112222221 222222211 000 000001 11
Q ss_pred ccCCCC---ccCC---C------------------CCcCC-----------------------------ccc-----ccc
Q psy5227 520 MLRGSG---VKWD---L------------------RKKQP-----------------------------YEI-----YNL 541 (693)
Q Consensus 520 ~aRasG---~~~D---~------------------R~~~p-----------------------------y~~-----Y~~ 541 (693)
+..+.- .++| . ...+| |.+ |+.
T Consensus 326 ~~~g~~~~~~~~d~~d~~~I~E~v~~swY~~~~~~~~~hP~~g~T~P~~~~~~~~~~~~~~~~~~~~~kYSW~KaPRY~g 405 (597)
T PRK10170 326 VINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRG 405 (597)
T ss_pred EECCccccccccCcccccccEEeccccceecCCCCCCCCCCCCcccCCCCCCcccccccccccccccCCccccccccCCC
Confidence 110000 0111 0 00112 111 333
Q ss_pred ccccc-c------c-----------------------CCCCChHHHHHHHHHHHHHHHHHH----HHHHHhcccCCCCcc
Q psy5227 542 LNFDI-P------I-----------------------GKNGDSYDRYLVRIEEMRQSNKII----KQCIKWLRSNKGPVI 587 (693)
Q Consensus 542 ~~~~~-~------~-----------------------~~~gd~~aR~~vR~~Ei~~s~~ii----~q~l~~l~~~~g~~~ 587 (693)
..+++ | . ....+.++|+++|+.|....+..+ +++++++. .|...
T Consensus 406 ~~~EvGPLAR~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~st~gR~~AR~~e~~~~~~~~~~~~~~~l~~i~--~g~~~ 483 (597)
T PRK10170 406 NAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLK--NGNLA 483 (597)
T ss_pred cccccCHHHHHHHHhhcCCchHHHHHHHHHHhcCCcHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCcc
Confidence 33332 0 0 001236679999999987776666 67777776 44321
Q ss_pred c-CCCcccchhhhhhchhhhhhhhhhcccccccccCcceEEEEeeCCcceeEEEEEECCCCceeEEEEeCCcccCHH---
Q psy5227 588 S-NNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQ--- 663 (693)
Q Consensus 588 ~-~~~~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~Geg~g~vEapRG~L~h~v~~d~~g~i~r~~i~~PS~~N~~--- 663 (693)
. +.+.. .| ..+ +++|+|+|++|||||.|+||++++ +|+|.+|+|++||+||++
T Consensus 484 ~~~~~~~-~p--------------------~~~-p~~~~GvG~~EApRGaL~HWi~Ie-~gkI~nYQiVvPTTWN~sPRD 540 (597)
T PRK10170 484 TASTEKW-EP--------------------ATW-PTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASPRD 540 (597)
T ss_pred cCCcccc-Cc--------------------cCC-CCcceEEEEEecCCccceeeEEEe-CCeEecceEeCCCCCCCCCCC
Confidence 1 11111 00 001 247899999999999999999996 699999999999999984
Q ss_pred ------HHHHHHcCCChhh------HHHHhcccccccccC
Q psy5227 664 ------SLSEMISGHMISD------VVTIIGTQDIVFGEI 691 (693)
Q Consensus 664 ------~le~~l~G~~i~d------~~~ii~S~DpC~sc~ 691 (693)
++|++|.|+.++| +.++|||||||++|+
T Consensus 541 ~~g~~Gp~E~aLiGt~v~d~~~Pvei~riirSFDPClaCa 580 (597)
T PRK10170 541 PKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACS 580 (597)
T ss_pred CCCCcCHHHHHhcCCCcCCCCCcceeeeeeecCCccccce
Confidence 8999999999887 578999999999996
No 16
>COG0374 HyaB Ni,Fe-hydrogenase I large subunit [Energy production and conversion]
Probab=100.00 E-value=6.6e-47 Score=406.66 Aligned_cols=354 Identities=20% Similarity=0.232 Sum_probs=238.8
Q ss_pred CccceEEEEEEcCCeEEEEEeeeccchhhHHHHhhCCCcCccccccccccccchhhHHHHHHHHHHHHcCCCCChhhHHH
Q psy5227 294 AHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYI 373 (693)
Q Consensus 294 ~~G~~r~~l~v~Ge~I~~~~~~~g~~hRG~Ekllegr~~~~a~~l~~RIcGic~~ah~~A~~~AvE~a~gievp~ra~~l 373 (693)
||||+|++++++++.|+++. ..|++.||||++++||+|+||+.+||||||+|+.+|++|+++|||+|+||+||.+|+++
T Consensus 12 IEGhlrievevd~~~ItdA~-ssgtlfRG~E~ILkgRDPrDA~~~tqRICGVCt~~Ha~As~~AlE~AlgItvP~nA~~~ 90 (545)
T COG0374 12 IEGHLRIEVEVEDGVITDAW-SSGTLFRGFEIILKGRDPRDAWAITQRICGVCTTSHALASVRALEDALGITVPVNALLI 90 (545)
T ss_pred eeeeEEEEEEEcCCceeeee-ecceehhhHHHHHcCCChhhhHhhhchhcccCccHHHHHHHHHHHHHhCCCCCchHHHH
Confidence 39999999999999999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhh------------------------------------------------------
Q psy5227 374 RVMFDEITRLLNHLMWIGSHSL-DIG------------------------------------------------------ 398 (693)
Q Consensus 374 R~ll~elerI~sHl~~lg~~~~-~~g------------------------------------------------------ 398 (693)
|+||+..+.+|||+.||+.+.. |..
T Consensus 91 Rni~~~~~~v~dHivhfY~L~~~D~~~~~~al~~dp~~~~~~a~~~~~~~~~~~g~~~~vq~~~~~~v~~g~lg~f~~g~ 170 (545)
T COG0374 91 RNIMQAALFVHDHIVHFYQLHGLDWVDVVSALKADPYKASELAQSYSSWPKNSPGYFKEVQNRLKDFVESGQLGIFANGY 170 (545)
T ss_pred HHHHHHHHHHHHHHHHHHhhccchhhhhHhhcccCchhHhhhhhhcccCcccCcchhhhhhhhhhhhccccccccccccc
Confidence 9999999999999999987642 110
Q ss_pred --h-------------HHHHHHHHHHHHHHHHHHHHHccCCccCCceeeCccccCCCCCCccchhhhhhhhhhhhhhhhh
Q psy5227 399 --A-------------MGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNEN 463 (693)
Q Consensus 399 --~-------------~~~~~~~~~~Re~~~~i~~~~~G~r~~~~~~~pGGv~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 463 (693)
+ ...+..++.....+.++++.++|+.+|+.+..+|||+..++.+. - .++|..
T Consensus 171 w~h~~y~l~p~~nli~~ahyl~~l~~qr~~~~~~a~fggk~Ph~~~~~vggv~~~~~~d~-----~-------~e~l~~- 237 (545)
T COG0374 171 WGHPAYKLPPEVNLIVVAHYLEALEFQREIVKIVALFGGKNPHPQNLAVGGVTCPINLDS-----P-------MERLNE- 237 (545)
T ss_pred cCCccccCCccCCceEeechHHHHHHHHHHHHHHHhhcccCcCCcccccCceecccCccc-----H-------HHHHHH-
Confidence 0 02345678888999999999999999999999999999887651 0 111111
Q ss_pred hhhhHHHHHHHHHHHHHHH-HHH-------HHHHh---------ccChhhhh------ccccccccC-------------
Q psy5227 464 RQGSLLDFIEDFTNRFPKN-IDE-------YETLL---------TDNRIWKQ------RLVGIGVVS------------- 507 (693)
Q Consensus 464 ~~~~~~~~~~~~l~~~~~~-~~~-------~~~~~---------~~~~~~~~------R~~~~G~l~------------- 507 (693)
....+.+.-+++... .++ +.+.+ .+.+.|.+ -+...|++.
T Consensus 238 ----~~~~i~~~~~f~~~~~~~D~~~~a~~y~~~~~~g~g~~~~ls~g~~pd~~~~~~~l~p~g~~~~~~~~~~~~~d~~ 313 (545)
T COG0374 238 ----VKSIIKKLADFINNVYLPDLEAIAAFYKEWVTIGGGLSNMLSYGEFPDDVDNGSLLDPGGVIINNNLSPSDELDIS 313 (545)
T ss_pred ----HHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccCchhhccccccCCcccccceecCcceecCCCccccccccHH
Confidence 222222222222221 111 11111 11111111 000111111
Q ss_pred ---hhhhhhcCCcc----cccCCCCccCCCCC---cCCccc-----cccccccc-------------------------c
Q psy5227 508 ---PERALSMGFTG----PMLRGSGVKWDLRK---KQPYEI-----YNLLNFDI-------------------------P 547 (693)
Q Consensus 508 ---~~~a~~~g~~G----p~aRasG~~~D~R~---~~py~~-----Y~~~~~~~-------------------------~ 547 (693)
+....+|...+ |.-+-+--.+|-.+ ...|.+ |+..++++ |
T Consensus 314 ~I~E~vtHsWY~~~~~lhP~dg~T~p~~~~~~~d~~~~YSWiKAPry~g~~~EVGPLAR~li~~~~~~~~~~~~~~~~~~ 393 (545)
T COG0374 314 KIQEFVTHSWYDDENGLHPWDGTTNPDYDGRSLDEKSKYSWIKAPRYDGKPVEVGPLARMLIAYAPGSTNLQEAKFTELP 393 (545)
T ss_pred HHHHhhhheeeecCCCCCCCCCCcCCCCCccccccccCceeeecCccCCeeeeeCcHHHHHHhhcCCccccccchhcccc
Confidence 00111111000 11000000111111 111221 33333322 1
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcccC--CCCcccCCCcccchhhhhhchhhhhhhhhhcccccccccCcce
Q psy5227 548 IGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSN--KGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGE 625 (693)
Q Consensus 548 ~~~~gd~~aR~~vR~~Ei~~s~~ii~q~l~~l~~~--~g~~~~~~~~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~Ge 625 (693)
.....+++.|.++|+.|+....+.+..+++++-.. .+......+.. | . .-+++
T Consensus 394 ~~~~~St~~R~~AR~~E~~~~~~~l~~~~~el~~n~~~~~~~t~~~~~--~--------------------~---t~e~k 448 (545)
T COG0374 394 LEGIFSTLGRTAARVLEAKAAANILLKWLEELMENLKKGDATTFNPEN--P--------------------A---TWEGK 448 (545)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCC--C--------------------c---ccccc
Confidence 12256889999999999988777666665554311 22211111110 1 0 02578
Q ss_pred EEEEeeCCcceeEEEEEECCCCceeEEEEeCCcccCHH---------HHHHHHcCCChhh------HHHHhccccccccc
Q psy5227 626 IYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQ---------SLSEMISGHMISD------VVTIIGTQDIVFGE 690 (693)
Q Consensus 626 g~g~vEapRG~L~h~v~~d~~g~i~r~~i~~PS~~N~~---------~le~~l~G~~i~d------~~~ii~S~DpC~sc 690 (693)
|+|++|||||.|+||+.++ +|+|.+|++++||+||.+ +.|++|.|+.++| +.+++||||||++|
T Consensus 449 G~G~~EApRGaL~HWi~I~-~gkI~nYQ~VvPSTWN~sPRd~~G~~G~~E~aLiGtki~~~~~Pleilr~~rSFDPClaC 527 (545)
T COG0374 449 GVGLTEAPRGALGHWVVIK-DGKIKNYQAVVPSTWNASPRDAKGQRGPYEQALIGTKIADPEQPLEILRTIHSFDPCLAC 527 (545)
T ss_pred ccceeeccccceeceEEec-CcEeecceeeccccccCCCcccCCCCChHHHHhhCCCCCccccchhhheeccccCcchhc
Confidence 9999999999999999998 799999999999999984 7999999999998 45899999999999
Q ss_pred C
Q psy5227 691 I 691 (693)
Q Consensus 691 ~ 691 (693)
+
T Consensus 528 a 528 (545)
T COG0374 528 A 528 (545)
T ss_pred e
Confidence 6
No 17
>PF00374 NiFeSe_Hases: Nickel-dependent hydrogenase; InterPro: IPR001501 Hydrogenases are enzymes that catalyze the reversible activation of hydrogen and which occur widely in prokaryotes as well as in some eukaryotes. There are various types of hydrogenases, but all of them seem to contain at least one iron-sulphur cluster. They can be broadly divided into two groups: hydrogenases containing nickel and, in some cases, also selenium (the [NiFe] and [NiFeSe] hydrogenases) and those lacking nickel (the [Fe] hydrogenases). The [NiFe] and [NiFeSe] hydrogenases are heterodimer that consist of a small subunit that contains a signal peptide and a large subunit. All the known large subunits seem to be evolutionary related []; they contain two Cys-x-x-Cys motifs; one at their N-terminal end; the other at their C-terminal end. These four cysteines are involved in the binding of nickel []. In the [NiFeSe] hydrogenases the first cysteine of the C-terminal motif is a selenocysteine which has experimentally been shown to be a nickel ligand [].; GO: 0016151 nickel ion binding; PDB: 1E3D_D 3USC_M 3USE_L 3UQY_M 3RGW_L 1CC1_L 1YQ9_I 2FRV_D 1FRV_B 3MYR_F ....
Probab=100.00 E-value=4.2e-47 Score=424.31 Aligned_cols=332 Identities=20% Similarity=0.233 Sum_probs=211.6
Q ss_pred hhHHHHhhCCCcCccccccccccccchhhHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-h---
Q psy5227 321 RATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSL-D--- 396 (693)
Q Consensus 321 RG~Ekllegr~~~~a~~l~~RIcGic~~ah~~A~~~AvE~a~gievp~ra~~lR~ll~elerI~sHl~~lg~~~~-~--- 396 (693)
||||++++||++.|++.+++||||+|+++|++|+++|+|+|+|+++|++|+++|+|+++++||+||++||+.+.. |
T Consensus 1 RG~E~il~gr~~~da~~~~~RiCGvC~~~H~~a~~~A~E~a~gi~~p~~a~~~R~l~~~~~~i~~H~~hfy~l~~~D~~~ 80 (507)
T PF00374_consen 1 RGFEKILEGRDPRDAPYITQRICGVCSAAHALASVRAVEDALGIEVPENARLLRNLILEAERIHDHLLHFYHLHAPDFVD 80 (507)
T ss_dssp --HHHHCTTS-GGGHHHHHHTT-SSSTTHHHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTS-
T ss_pred CcHHHHhcCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhh
Confidence 899999999999999999999999999999999999999999999999999999999999999999999986542 1
Q ss_pred ---------------------------------------------h--------h-------------hHHHHHHHHHHH
Q psy5227 397 ---------------------------------------------I--------G-------------AMGVLLYAFRER 410 (693)
Q Consensus 397 ---------------------------------------------~--------g-------------~~~~~~~~~~~R 410 (693)
+ | ....+..++.++
T Consensus 81 ~~~al~adp~~~~~~a~~~s~~~~~~~~~~~~vq~kl~~~v~~g~lg~f~~~y~~h~~y~l~pe~nl~~v~hYleAL~~q 160 (507)
T PF00374_consen 81 VVSALKADPKKAAALAQSISDWPKSSAGYFKAVQDKLKKFVESGQLGPFANGYWGHPDYKLPPEVNLIAVAHYLEALEIQ 160 (507)
T ss_dssp TGGGGGS-HHHHHHHHHHHSSSSBGSHHHHHHHHHHHHHHHHTTHHGGGTTHTTT-TT--S-HHHHHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHhccCCCCccCCCCCCCccccCChhHhHHHHHHHHHHHHHH
Confidence 0 0 124667899999
Q ss_pred HHHHHHHHHHccCCccCCceeeCccccCCCCCCccchhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHH-HHHHHHH
Q psy5227 411 EDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKN-IDEYETL 489 (693)
Q Consensus 411 e~~~~i~~~~~G~r~~~~~~~pGGv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~ 489 (693)
.++.+++++++|+.+|+++++||||++.++.. .++.+++..+...+.++.++++.. ++++..+
T Consensus 161 r~~~ei~AIfGGK~PH~s~~vpGGVt~~~~~~----------------~~~~erl~~~~~~~~e~~~Fi~~~y~pDv~~i 224 (507)
T PF00374_consen 161 RKAHEIMAIFGGKWPHPSSIVPGGVTCAPNLD----------------DINMERLAEFKSLLEEVRDFIENVYLPDVLAI 224 (507)
T ss_dssp HHHHHHHHHHHSSSSS-SSEETTEESSGCGGS----------------HB-HHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCCccCCCcCCCCCCc----------------hHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 99999999999999999999999999877654 122233333555555555555554 4455444
Q ss_pred hccChhhhhccccc--------cccChhh---hhhcC-CcccccCCCC---ccCCCCC----------------------
Q psy5227 490 LTDNRIWKQRLVGI--------GVVSPER---ALSMG-FTGPMLRGSG---VKWDLRK---------------------- 532 (693)
Q Consensus 490 ~~~~~~~~~R~~~~--------G~l~~~~---a~~~g-~~Gp~aRasG---~~~D~R~---------------------- 532 (693)
....+.+.. ..|. |.+.... ....- -.|.+..+.- .++|..+
T Consensus 225 ~~~y~d~~~-~~G~~~~nfls~G~fp~~~~~~~~~~~~~~Gvi~~g~l~~~~~~D~~~I~E~V~hSwY~~~~~~~~hP~~ 303 (507)
T PF00374_consen 225 ASFYKDWKY-GGGVGDGNFLSYGDFPDDNDYDGGGRLFPPGVIINGDLSEVHPFDPNKITEDVTHSWYKYGDESGLHPWD 303 (507)
T ss_dssp HHHTGGGGG-SSGGCGTEEEEEEEEESSTTTCGGGEEEEEEEEETTETTCEB---GGGEEEE-TTSSBSTSSTSTBEGGG
T ss_pred HHHHhhhhc-cCCCCccceeeccCCCcccccCCCceeccCeeEECCccccccccccccceeccCccccccCCCcCCCCcc
Confidence 443443221 1222 2221110 00000 0111111100 0111111
Q ss_pred -------------cCCccc-----cccccccc------------------------------ccCCCCChHHHHHHHHHH
Q psy5227 533 -------------KQPYEI-----YNLLNFDI------------------------------PIGKNGDSYDRYLVRIEE 564 (693)
Q Consensus 533 -------------~~py~~-----Y~~~~~~~------------------------------~~~~~gd~~aR~~vR~~E 564 (693)
...|.+ |+..++++ +.....++++|+++|+.|
T Consensus 304 G~T~p~y~~~~d~~~kYSW~KaPRy~g~~~EVGPLAR~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~R~~AR~iE 383 (507)
T PF00374_consen 304 GETEPDYTGFKDKDGKYSWIKAPRYDGKPMEVGPLARLLVAYAKGHPLIKELVDEFLKKLGLPPEALFSTLGRHLARAIE 383 (507)
T ss_dssp ---EB-SCCTTBTTSB-BSS-EEEETTB--BESHHHHHHHHHHTTHHHHHHHHHHHHHHHTCHGGGGSSHHHHHHHHHHH
T ss_pred ccccccccccccccccccccceeeECCCCceeCHHHHHHHhhhcCChhHHHHHHHHHHHhcCcccccchhhhhHHHHHHH
Confidence 011221 23322322 111224678999999999
Q ss_pred HHHHHHHHHHHHHhccc--CCCCcccCCCcccchhhhhhchhhhhhhhhhcccccccccCcceEEEEeeCCcceeEEEEE
Q psy5227 565 MRQSNKIIKQCIKWLRS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLV 642 (693)
Q Consensus 565 i~~s~~ii~q~l~~l~~--~~g~~~~~~~~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~Geg~g~vEapRG~L~h~v~ 642 (693)
+..++..+.++++++.. ..|+......... .....+..|+|+|++|||||.|+||++
T Consensus 384 ~~~~~~~~~~~l~~l~~~i~~Gd~~~~~~~~~---------------------~~~~~P~~~~GvG~~EApRG~L~H~~~ 442 (507)
T PF00374_consen 384 AALAAERMEEWLDELLANIKSGDKATFNIPPW---------------------DPSTWPKEGEGVGLVEAPRGALGHWIV 442 (507)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHH--B-BTTB---------------------SGGGS-SEEEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCccccccc---------------------ccccCCCcceEEEEEEecccceEEEEE
Confidence 99888666666665431 0232110000000 000112468999999999999999999
Q ss_pred ECCCCceeEEEEeCCcccCHH---------HHHHHHcCCChhh------HHHHhcccccccccC
Q psy5227 643 SDGANKPYRIKIRSPGFAHLQ---------SLSEMISGHMISD------VVTIIGTQDIVFGEI 691 (693)
Q Consensus 643 ~d~~g~i~r~~i~~PS~~N~~---------~le~~l~G~~i~d------~~~ii~S~DpC~sc~ 691 (693)
++ +|+|.+|+|++||+||++ ++|++|.|..+.| +.++|||||||+||+
T Consensus 443 i~-~G~I~nyqiIvPTtwN~~Prd~~g~~g~~E~aLig~~v~d~~~p~ei~r~irSfDPCisCa 505 (507)
T PF00374_consen 443 IE-DGKIKNYQIIVPTTWNASPRDENGQPGPYEQALIGTPVADPENPLEILRTIRSFDPCISCA 505 (507)
T ss_dssp EE-TTEEEEEEEEEHHHHHHS---TT----HHHHHHTT-B-SSTTS-HHHHHHHHHT--BHHHH
T ss_pred EC-CCeEEEEEEeCCCccchhhhhhccccHHHHHHhcCCCccccccHHHHHHHhhcCCcccccc
Confidence 96 699999999999999996 6999999998876 678999999999995
No 18
>PRK14818 NADH dehydrogenase subunit B; Provisional
Probab=100.00 E-value=3.1e-41 Score=317.14 Aligned_cols=138 Identities=56% Similarity=0.984 Sum_probs=134.1
Q ss_pred cccccccccccccccCCCCCchHHHHHhhcCCccccccccceeccCCCCccEEEEccccCCCcHHHHHHHHHHcCCCceE
Q psy5227 27 DKLINWTRTSSMWPMTFGLACCAIEMMHAGASRYDLDRFGIMFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMTEPKWV 106 (693)
Q Consensus 27 ~~rir~~r~~~lw~~~~~c~gc~~e~l~~~~~~~d~~~~~~~~~~~p~~~Dil~veG~v~~~~~~~~~~~~~~~~~~~~v 106 (693)
+..++|.|++|+|.++++++||++|++++..|.||++|||+.+++||||||+|+|||+||.+|.+.++++|++||+||+|
T Consensus 22 ~~~~~w~r~~Slw~~~~~t~cC~iEi~a~~~p~yD~eRfGi~~~aSPRhADvLlVtG~vT~km~~~l~~~yeqmPePK~V 101 (173)
T PRK14818 22 DNLINLARASSLYYLTFGLACCGIELMQTGGPRADVMRFGAIPRASPRQADFMIVAGTLTYKMAERARLLYDQMPEPKYV 101 (173)
T ss_pred HHHHHHHhhCCceeeEeCCccHHHHHHHhcCCccCHHHcCCeecCCcccccEEEEeCcCccccHHHHHHHHHhCCCCCEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecccCCCCCcCCcCCccccCcceeeecceeccCCCCChhhhHHHHHHHHHHHhhhc
Q psy5227 107 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYIPGCPPTAEALLYDYYSTMKILRDHV 164 (693)
Q Consensus 107 va~G~CA~~GGi~~~~~~~~~~~~~~v~vd~~ipGCPp~p~~i~~~l~~ll~~Lr~~~ 164 (693)
||+|+||++||+|+++|+..+++++++|||++||||||+|++|+++|+.+++.++++.
T Consensus 102 IA~G~CA~sGGif~~sY~~~~gvd~vIpVDvyIPGCPP~PeaIl~gil~L~~~i~~~~ 159 (173)
T PRK14818 102 ISMGSCSNCGGLFQLGYSVCKGVDKVIPVDVYVPGCPPRPEALTEGLLRLQEIVRSEP 159 (173)
T ss_pred EEeccccccCCcccCCcccccCCCCccCCcEEccCCCCCHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999998653
No 19
>COG0377 NuoB NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases [Energy production and conversion]
Probab=100.00 E-value=2.4e-40 Score=309.94 Aligned_cols=138 Identities=71% Similarity=1.216 Sum_probs=134.7
Q ss_pred ccccccccccccccccCCCCCchHHHHHhhcCCccccccccceeccCCCCccEEEEccccCCCcHHHHHHHHHHcCCCce
Q psy5227 26 GDKLINWTRTSSMWPMTFGLACCAIEMMHAGASRYDLDRFGIMFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMTEPKW 105 (693)
Q Consensus 26 ~~~rir~~r~~~lw~~~~~c~gc~~e~l~~~~~~~d~~~~~~~~~~~p~~~Dil~veG~v~~~~~~~~~~~~~~~~~~~~ 105 (693)
-++.+||.|++|||+++||.+||.+|+.++..+.||++|||+.+.+||||+|+++|+|.++++|.+.++++|+|||+||+
T Consensus 26 ~~~l~~W~r~~SLWp~~fg~aCC~iEm~~~~~~r~D~~RfG~~~r~SPRQaDvmIvaGt~t~Kmap~lr~~YdQMPePK~ 105 (194)
T COG0377 26 VDKLINWGRKNSLWPVTFGLACCAVEMMATFASRYDLERFGEVPRASPRQADLMIVAGTLTNKMAPALRRVYDQMPEPKW 105 (194)
T ss_pred hHHHHhhhhhcccchhhhcchhHHHHHHhhccccccHHHhCcCCCCCcccccEEEEeccchHHHHHHHHHHHHhCCCCcE
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecccCCCCCcCCcCCccccCcceeeecceeccCCCCChhhhHHHHHHHHHHHhhh
Q psy5227 106 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYIPGCPPTAEALLYDYYSTMKILRDH 163 (693)
Q Consensus 106 vva~G~CA~~GGi~~~~~~~~~~~~~~v~vd~~ipGCPp~p~~i~~~l~~ll~~Lr~~ 163 (693)
|||+|+||..||+|+.+|++++++|++||||+|||||||+||++++++..|.+.++++
T Consensus 106 VIsMGsCa~~GG~f~~sYsvV~g~D~~vPVDvyIPGCPPrPEAl~~gi~~Lq~KI~~~ 163 (194)
T COG0377 106 VISMGSCANSGGMYWNSYSVVQGVDRVVPVDVYIPGCPPRPEALLYGILLLQEKIRRE 163 (194)
T ss_pred EEEecccccCCCcccccceeeeccceeEeeeeecCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999973
No 20
>PRK14813 NADH dehydrogenase subunit B; Provisional
Probab=100.00 E-value=1.1e-39 Score=311.91 Aligned_cols=137 Identities=58% Similarity=1.093 Sum_probs=132.5
Q ss_pred cccccccccccccccCCCCCchHHHHHhhcCCccccccccceeccCCCCccEEEEccccCCCcHHHHHHHHHHcCCCceE
Q psy5227 27 DKLINWTRTSSMWPMTFGLACCAIEMMHAGASRYDLDRFGIMFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMTEPKWV 106 (693)
Q Consensus 27 ~~rir~~r~~~lw~~~~~c~gc~~e~l~~~~~~~d~~~~~~~~~~~p~~~Dil~veG~v~~~~~~~~~~~~~~~~~~~~v 106 (693)
++.+||+|++|+|+++|+++||++|++++.+|.||++|||+.++++|||+|+++|+|+||++|.+.++++|++||+||+|
T Consensus 19 ~~~~~w~r~~Slw~~~~~t~cC~iE~~a~~~p~yD~eRfGi~~~asPR~ADvllVtG~Vt~km~~~l~~~y~qmPePK~V 98 (189)
T PRK14813 19 DNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRSSPRQSDLMIVAGTVTMKMAERVVRLYEQMPEPRYV 98 (189)
T ss_pred HHHHHHHHhCCCceeeeCcccHHHHHHHhcccCCCHHHcCCeecCCcccceEEEEeccCchhhHHHHHHHHHhCCCCCEE
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecccCCCCCcCC-cCCccccCcceeeecceeccCCCCChhhhHHHHHHHHHHHhhh
Q psy5227 107 ISMGSCANGGGYYH-YSYSVVRGCDRIVPVDVYIPGCPPTAEALLYDYYSTMKILRDH 163 (693)
Q Consensus 107 va~G~CA~~GGi~~-~~~~~~~~~~~~v~vd~~ipGCPp~p~~i~~~l~~ll~~Lr~~ 163 (693)
||+|+||++||+|. ++|+..+|++++||||++||||||+|++|+++++.+.+.++++
T Consensus 99 IA~GaCA~sGG~~~~~sY~~~~gvd~vIpVDv~IPGCPP~PeaIl~gl~~l~~~i~~~ 156 (189)
T PRK14813 99 LSMGSCSNCGGPYWEHGYHVLKGVDRIIPVDVYVPGCPPRPEALIGGLMKVQELIRME 156 (189)
T ss_pred EEecccccCCCCcccCCcccccCCCCccCCcEEccCCCCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999875 5999999999999999999999999999999999999999865
No 21
>COG3260 Ni,Fe-hydrogenase III small subunit [Energy production and conversion]
Probab=100.00 E-value=1.1e-39 Score=291.33 Aligned_cols=129 Identities=41% Similarity=0.751 Sum_probs=122.8
Q ss_pred cccccccC---CCCCchHHHHHhhcCCccccccccceeccCCCCccEEEEccccCCCcHHHHHHHHHHcCCCceEEeecc
Q psy5227 35 TSSMWPMT---FGLACCAIEMMHAGASRYDLDRFGIMFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMTEPKWVISMGS 111 (693)
Q Consensus 35 ~~~lw~~~---~~c~gc~~e~l~~~~~~~d~~~~~~~~~~~p~~~Dil~veG~v~~~~~~~~~~~~~~~~~~~~vva~G~ 111 (693)
++|+|..+ .|||||++|++++++|.||++||||.++++|||||+|+|||+||.+|++.++++|++||+||+|||+|+
T Consensus 6 ~rS~~v~~VdsG~CNgCdIEi~a~~sP~YDaErfgI~~v~sPRhADiLlVTG~vT~~~~e~lkk~Yea~PePKiViA~Ga 85 (148)
T COG3260 6 KRSLHVYHVDSGGCNGCDIEILAALSPRYDAERFGIKVVNSPRHADILLVTGAVTRQMREPLKKAYEAMPEPKIVIAVGA 85 (148)
T ss_pred ccceEEEEeccCCcCceeEEEeeccCcccchHHheeEEeCCCccccEEEEeccccHHHHHHHHHHHHhCCCCcEEEEEcc
Confidence 56777655 489999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcCCcCCccccCcceeeecceeccCCCCChhhhHHHHHHHHHHHhhh
Q psy5227 112 CANGGGYYHYSYSVVRGCDRIVPVDVYIPGCPPTAEALLYDYYSTMKILRDH 163 (693)
Q Consensus 112 CA~~GGi~~~~~~~~~~~~~~v~vd~~ipGCPp~p~~i~~~l~~ll~~Lr~~ 163 (693)
||++||||+++|.+.+|+++++|||++||||||+|++|++++..++..+.+.
T Consensus 86 Ca~~GGIf~~~~~v~gpvd~viPVDv~IPGCPP~P~~il~g~~~al~~~~k~ 137 (148)
T COG3260 86 CALSGGIFKDSYSVWGPVDKVIPVDVEIPGCPPRPEAILAGLVAALGKLEKK 137 (148)
T ss_pred cccCCceecccccccccccceeEeeeEcCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999887754
No 22
>CHL00023 ndhK NADH dehydrogenase subunit K
Probab=100.00 E-value=3.2e-39 Score=314.84 Aligned_cols=138 Identities=48% Similarity=0.959 Sum_probs=133.4
Q ss_pred ccccccccccccccccCCCCCchHHHHHhhcCCccccccccceeccCCCCccEEEEccccCCCcHHHHHHHHHHcCCCce
Q psy5227 26 GDKLINWTRTSSMWPMTFGLACCAIEMMHAGASRYDLDRFGIMFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMTEPKW 105 (693)
Q Consensus 26 ~~~rir~~r~~~lw~~~~~c~gc~~e~l~~~~~~~d~~~~~~~~~~~p~~~Dil~veG~v~~~~~~~~~~~~~~~~~~~~ 105 (693)
-+...||+|++|+|++++|++||++||+++..|.||++|||+.+++||||||+++|+|+||.+|.+.++++|++||+||+
T Consensus 22 ~~~~~~w~r~~Slw~~~~g~sCC~iE~~a~~~p~yDleRfGi~~~aSPRhADvliVtG~VT~km~~~L~rlyeqmPePK~ 101 (225)
T CHL00023 22 LNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKY 101 (225)
T ss_pred HHHHHHHHHhCCcccccCCcchHHHHHHHhCCCccCHHHcCCeecCCcccceEEEEecCCccccHHHHHHHHHhcCCCCe
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecccCCCCCcCC-cCCccccCcceeeecceeccCCCCChhhhHHHHHHHHHHHhhh
Q psy5227 106 VISMGSCANGGGYYH-YSYSVVRGCDRIVPVDVYIPGCPPTAEALLYDYYSTMKILRDH 163 (693)
Q Consensus 106 vva~G~CA~~GGi~~-~~~~~~~~~~~~v~vd~~ipGCPp~p~~i~~~l~~ll~~Lr~~ 163 (693)
|||+|+||++||+|+ ++|++++|++++||||++||||||+|++|+++|..+++.++++
T Consensus 102 VIA~GaCA~sGGif~~dsy~~v~gvd~vIPVDv~IPGCPP~PeaIi~~l~~L~~ki~~~ 160 (225)
T CHL00023 102 VIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160 (225)
T ss_pred EEEEccccccCCcccCCCcccccCccccceeeEEecCCCCCHHHHHHHHHHHHHHHhcc
Confidence 999999999999997 8999999999999999999999999999999999999988865
No 23
>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit. This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2.
Probab=100.00 E-value=2.3e-39 Score=301.44 Aligned_cols=136 Identities=72% Similarity=1.305 Sum_probs=131.5
Q ss_pred cccccccccccccccCCCCCchHHHHHhhcCCcccccccc-ceeccCCCCccEEEEccccCCCcHHHHHHHHHHcCCCce
Q psy5227 27 DKLINWTRTSSMWPMTFGLACCAIEMMHAGASRYDLDRFG-IMFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMTEPKW 105 (693)
Q Consensus 27 ~~rir~~r~~~lw~~~~~c~gc~~e~l~~~~~~~d~~~~~-~~~~~~p~~~Dil~veG~v~~~~~~~~~~~~~~~~~~~~ 105 (693)
+..++|.|++|+|+++++++||++|++++..+.||++||| +.++++|||+|+++|||+||+++.+.++++|++||+||+
T Consensus 8 ~~~~~~~r~~s~w~~~~~t~cC~iE~~~~~~~~~D~erfG~i~~~~sPr~aDvllVtG~vt~~~~~~l~~~~e~~p~pk~ 87 (145)
T TIGR01957 8 DKLLNWGRSNSLWPLTFGLACCAIEMMATGASRYDLDRFGSEVFRASPRQADVMIVAGTVTKKMAPALRRLYDQMPEPKW 87 (145)
T ss_pred HHHHhhhhcCCceeeeeCccHHHHHHHHccCccccHHHhCCceecCCCCcceEEEEecCCcHHHHHHHHHHHHhccCCce
Confidence 4567999999999999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred EEeecccCCCCCcCCcCCccccCcceeeecceeccCCCCChhhhHHHHHHHHHHHhh
Q psy5227 106 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYIPGCPPTAEALLYDYYSTMKILRD 162 (693)
Q Consensus 106 vva~G~CA~~GGi~~~~~~~~~~~~~~v~vd~~ipGCPp~p~~i~~~l~~ll~~Lr~ 162 (693)
|||+|+||++||+|+.+|+...+++++++||++||||||+|++|++++.++++.++.
T Consensus 88 VIA~GsCA~~GGi~~~~y~~~~~v~~~ipVDi~IPGCPp~Pe~i~~~l~~l~~~~~~ 144 (145)
T TIGR01957 88 VISMGACANSGGMFHTSYSVVQGVDRIVPVDVYIPGCPPRPEALIYGLIKLQKKIKR 144 (145)
T ss_pred EEEecceeecCCCccCCCccccCcccccccceEeCCCCCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999988874
No 24
>KOG1687|consensus
Probab=100.00 E-value=2.5e-39 Score=286.83 Aligned_cols=145 Identities=70% Similarity=1.325 Sum_probs=139.1
Q ss_pred CcccccccccccccccccCCCCCchHHHHHhhcCCccccccccceeccCCCCccEEEEccccCCCcHHHHHHHHHHcCCC
Q psy5227 24 EFGDKLINWTRTSSMWPMTFGLACCAIEMMHAGASRYDLDRFGIMFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMTEP 103 (693)
Q Consensus 24 p~~~~rir~~r~~~lw~~~~~c~gc~~e~l~~~~~~~d~~~~~~~~~~~p~~~Dil~veG~v~~~~~~~~~~~~~~~~~~ 103 (693)
..-+...||+|+.|||+++||.+||.+|++.+..|+||++|||+.|.+|||++|+++|.|.+|++|.++++++++|||+|
T Consensus 20 a~ldDl~Nwar~~SlWPltfGlaCCavEmmh~~a~RyD~DRyGvvfRaSPRQaD~iivAGTlTnKMAPalrkvYdQMPEp 99 (168)
T KOG1687|consen 20 ARLDDLLNWARRGSLWPLTFGLACCAVEMMHLAAPRYDMDRYGVVFRASPRQADLIIVAGTLTNKMAPALRKVYDQMPEP 99 (168)
T ss_pred hhHHHHhhhhhhcCccchhhhhHHHHHHHHHhccccccccccceeecCCCccccEEEEeccchhhhcHHHHHHHhhCCCC
Confidence 34466889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEeecccCCCCCcCCcCCccccCcceeeecceeccCCCCChhhhHHHHHHHHHHHhhhccccc
Q psy5227 104 KWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYIPGCPPTAEALLYDYYSTMKILRDHVNFRF 168 (693)
Q Consensus 104 ~~vva~G~CA~~GGi~~~~~~~~~~~~~~v~vd~~ipGCPp~p~~i~~~l~~ll~~Lr~~~~~~f 168 (693)
|+||++|+||..||.|+.+|++++|+|++||||++||||||++|+++++++++.+.++....++|
T Consensus 100 r~VisMGsCangGGyyhysYSvvRGcDriiPVDiYvPGCPPtaEAllygilqLqkKi~R~r~~q~ 164 (168)
T KOG1687|consen 100 RWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALLYGILQLQKKIKRIRPLQF 164 (168)
T ss_pred eeEEEecccccCCceEEEEehhhccccceeeeeeecCCCCCCHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999987766655
No 25
>PRK14816 NADH dehydrogenase subunit B; Provisional
Probab=100.00 E-value=4.8e-39 Score=306.40 Aligned_cols=139 Identities=51% Similarity=1.036 Sum_probs=132.7
Q ss_pred ccccccccccccccccCCCCCchHHHHHhhcCCccccccccceec-cCCCCccEEEEccccCCCcHHHHHHHHHHcCCCc
Q psy5227 26 GDKLINWTRTSSMWPMTFGLACCAIEMMHAGASRYDLDRFGIMFR-PSPRQSDVMIVAGTLCNKMAPALRKVYDQMTEPK 104 (693)
Q Consensus 26 ~~~rir~~r~~~lw~~~~~c~gc~~e~l~~~~~~~d~~~~~~~~~-~~p~~~Dil~veG~v~~~~~~~~~~~~~~~~~~~ 104 (693)
-+..++|.|++|+|+++++.+||++|++++..|.||++|||+.++ +||||||+++|||+||++|.+.+++++++|++||
T Consensus 31 ~~~~~~w~r~~slw~~~~~~~CC~iE~~a~~~p~yD~eRfGi~~~~~sPRhADvllVtG~VT~~m~~~l~~~~e~~p~pK 110 (182)
T PRK14816 31 LDDLINWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMADPK 110 (182)
T ss_pred HHHHHhhhhcCccceeeeCcchHHHHHHHhcCccccHHHhCccccCCCCCcceEEEEecCCcchhHHHHHHHHHhcCCCC
Confidence 356789999999999999889999999999999999999999765 9999999999999999999999999999999999
Q ss_pred eEEeecccCCCCCcCCcCCccccCcceeeecceeccCCCCChhhhHHHHHHHHHHHhhhc
Q psy5227 105 WVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYIPGCPPTAEALLYDYYSTMKILRDHV 164 (693)
Q Consensus 105 ~vva~G~CA~~GGi~~~~~~~~~~~~~~v~vd~~ipGCPp~p~~i~~~l~~ll~~Lr~~~ 164 (693)
+|||+|+||++||+|+++|++..++++++|||++||||||+|++|++++..+++.++.+.
T Consensus 111 ~VIAvGsCA~~GGif~~sy~~~~gvd~vIpVDv~IPGCPP~Pe~Il~~l~~L~~ki~~~~ 170 (182)
T PRK14816 111 YVIAVGGCAVSGGPFKKSYHVLNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVKIEK 170 (182)
T ss_pred EEEEeccccccCCccccCCccCCCccccccccEEeeCcCCCHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999999999999888653
No 26
>PRK06411 NADH dehydrogenase subunit B; Validated
Probab=100.00 E-value=4.7e-39 Score=308.77 Aligned_cols=143 Identities=72% Similarity=1.292 Sum_probs=135.7
Q ss_pred CCC-CcccccccccccccccccCCCCCchHHHHHhhcCCccccccccceeccCCCCccEEEEccccCCCcHHHHHHHHHH
Q psy5227 21 GFK-EFGDKLINWTRTSSMWPMTFGLACCAIEMMHAGASRYDLDRFGIMFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQ 99 (693)
Q Consensus 21 Gf~-p~~~~rir~~r~~~lw~~~~~c~gc~~e~l~~~~~~~d~~~~~~~~~~~p~~~Dil~veG~v~~~~~~~~~~~~~~ 99 (693)
||. ..-+...||+|++|+|+++|+++||++|++++..+.||++|||+.++++|||+|+++|||+||++|.+.+++++++
T Consensus 19 ~~~~~~~~~~~~w~r~~Slw~~~~~~~CC~iE~~~~~~~~yDieRfGi~~~~sPr~aDvllV~G~vt~~~~~~l~~~~e~ 98 (183)
T PRK06411 19 GVVLTTLDDLVNWARKNSLWPLTFGLACCAIEMMAAGTSRYDLDRFGMVFRASPRQADLMIVAGTLTNKMAPALRRLYDQ 98 (183)
T ss_pred CeeeeeHHHHHHHHHhCCccceeeCccHhHHHHHHccCccccHHHhCccccCCCCceeEEEEEeCCCccchHHHHHHHHH
Confidence 444 3335678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEeecccCCCCCcCCcCCccccCcceeeecceeccCCCCChhhhHHHHHHHHHHHhhh
Q psy5227 100 MTEPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYIPGCPPTAEALLYDYYSTMKILRDH 163 (693)
Q Consensus 100 ~~~~~~vva~G~CA~~GGi~~~~~~~~~~~~~~v~vd~~ipGCPp~p~~i~~~l~~ll~~Lr~~ 163 (693)
||+||+|||+|+||++||+|+.+|+...|+++++|||++||||||+|++|+++|..+++.++++
T Consensus 99 mp~pk~VIA~GaCA~~GGif~~sy~~~~gv~~~ipVDv~IPGCPP~Pe~il~~l~~l~~~i~~~ 162 (183)
T PRK06411 99 MPEPKWVISMGSCANSGGMYHYSYSVVQGVDRIVPVDVYVPGCPPRPEALLYGILKLQKKIRQS 162 (183)
T ss_pred cCcCCeEEEEecccccCCcccCCCccccCcccccccceEeCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999865
No 27
>PRK14817 NADH dehydrogenase subunit B; Provisional
Probab=100.00 E-value=1.3e-38 Score=303.26 Aligned_cols=138 Identities=46% Similarity=0.932 Sum_probs=131.6
Q ss_pred ccccccccccccccccCCCCCchHHHHHhhcCCcccccccccee-ccCCCCccEEEEccccCCCcHHHHHHHHHHcCCCc
Q psy5227 26 GDKLINWTRTSSMWPMTFGLACCAIEMMHAGASRYDLDRFGIMF-RPSPRQSDVMIVAGTLCNKMAPALRKVYDQMTEPK 104 (693)
Q Consensus 26 ~~~rir~~r~~~lw~~~~~c~gc~~e~l~~~~~~~d~~~~~~~~-~~~p~~~Dil~veG~v~~~~~~~~~~~~~~~~~~~ 104 (693)
-++.++|.|++|||+++|+++||++||.++..+.||++|||+.+ .++|||+||++|||+||.+|.+.++++|++||+||
T Consensus 25 ~~~~~~w~r~~Slw~~~~~~~CC~iE~~a~~~~~yDleRfGi~~~~~sPR~ADillVeG~VT~~m~~~l~~~~e~~p~pK 104 (181)
T PRK14817 25 VSKSLGWARKYSLFTYPFVTACCGMEYMTMASARYDSDRFGAAMPRFSPRQADLLMVVGTVNCKQAPILQRVYEQMADPK 104 (181)
T ss_pred HHHHHHHHhhCCccccccccchHHHHHHHhcCccccHHHhceeeccCCCcceeEEEEEecCCccchHHHHHHHHHcccCC
Confidence 35678999999999999999999999999999999999999977 59999999999999999999999999999999999
Q ss_pred eEEeecccCCCCCcCCcCCccccCcceeeecceeccCCCCChhhhHHHHHHHHHHHhhhc
Q psy5227 105 WVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYIPGCPPTAEALLYDYYSTMKILRDHV 164 (693)
Q Consensus 105 ~vva~G~CA~~GGi~~~~~~~~~~~~~~v~vd~~ipGCPp~p~~i~~~l~~ll~~Lr~~~ 164 (693)
+|||+|+||++||+| ++|+..+|+++++|||++||||||+|++|+++|..+++.++.+.
T Consensus 105 ~VIAvGaCA~~GGi~-~~y~~~~gv~~vvpVDv~IPGCPP~Pe~il~~l~~l~~ki~~~~ 163 (181)
T PRK14817 105 WVMAFGVCASSGGFY-DNYATVQGIDRIIPVDVYVPGCPPRPEQVLDGIMLLQKKIQNQS 163 (181)
T ss_pred EEEEeccccccCCcC-CCcccccCccccceeeEEecCCCCCHHHHHHHHHHHHHHhhcCC
Confidence 999999999999988 78999999999999999999999999999999999999988653
No 28
>PRK14815 NADH dehydrogenase subunit B; Provisional
Probab=100.00 E-value=2.9e-38 Score=300.78 Aligned_cols=137 Identities=59% Similarity=1.080 Sum_probs=130.7
Q ss_pred cccccccccccccccCCCCCchHHHHHhhcCCcccccccccee-ccCCCCccEEEEccccCCCcHHHHHHHHHHcCCCce
Q psy5227 27 DKLINWTRTSSMWPMTFGLACCAIEMMHAGASRYDLDRFGIMF-RPSPRQSDVMIVAGTLCNKMAPALRKVYDQMTEPKW 105 (693)
Q Consensus 27 ~~rir~~r~~~lw~~~~~c~gc~~e~l~~~~~~~d~~~~~~~~-~~~p~~~Dil~veG~v~~~~~~~~~~~~~~~~~~~~ 105 (693)
+..++|.|++|||+.+|+|+||++|+.++..+.||++|||+.+ .++|||+|+++|||+||.+|.+.++++|++||+||+
T Consensus 24 ~~~~~w~r~~Slw~~~~~~sCC~iE~~a~~~~~yDieRfGi~~~~~SPR~ADillVtG~VT~~m~~~l~r~ye~~p~pK~ 103 (183)
T PRK14815 24 DAAINWIRKNSLWPMPMGLACCAIELMAVACSRFDISRFGAEVMRFSPRQADVMIVAGTVTYKMALAVRRIYDQMPEPKW 103 (183)
T ss_pred HHHHHHHHhCCccceeEccchHHHHHHHhcCccccHHHhCcccCCCCCccccEEEEeCcCchhhHHHHHHHHHhCCCCCE
Confidence 4577999999999999999999999999999999999999865 599999999999999999999999999999999999
Q ss_pred EEeecccCCCCCcCCcCCccccCcceeeecceeccCCCCChhhhHHHHHHHHHHHhhhc
Q psy5227 106 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYIPGCPPTAEALLYDYYSTMKILRDHV 164 (693)
Q Consensus 106 vva~G~CA~~GGi~~~~~~~~~~~~~~v~vd~~ipGCPp~p~~i~~~l~~ll~~Lr~~~ 164 (693)
|||+|+||++||+|+ +|+..+|+++++|||++||||||+|++|+++|..+++.++.+.
T Consensus 104 VIAvGsCA~~GGi~~-sy~~~~gv~~~ipVDv~IPGCPP~Pe~il~~l~~l~~~i~~~~ 161 (183)
T PRK14815 104 VIAMGACASSGGMYR-SYSVLQGVDRILPVDVYISGCPPRPEAILDALIKLQKKIDTER 161 (183)
T ss_pred EEEeccccccCCCcc-ccccccCccccccccEEecCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 999999999999995 8999999999999999999999999999999999999998653
No 29
>PRK14820 NADH dehydrogenase subunit B; Provisional
Probab=100.00 E-value=2.1e-37 Score=295.66 Aligned_cols=136 Identities=47% Similarity=0.986 Sum_probs=130.8
Q ss_pred cccccccccccccccCCCCCchHHHHHhhcCCccccccccc-eeccCCCCccEEEEccccCCCcHHHHHHHHHHcCCCce
Q psy5227 27 DKLINWTRTSSMWPMTFGLACCAIEMMHAGASRYDLDRFGI-MFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMTEPKW 105 (693)
Q Consensus 27 ~~rir~~r~~~lw~~~~~c~gc~~e~l~~~~~~~d~~~~~~-~~~~~p~~~Dil~veG~v~~~~~~~~~~~~~~~~~~~~ 105 (693)
+..+||+|++|+|+++|+.+||++|++++..+.||++|||+ .+.++|||+|+++|||+||++|.+.++++|++||+||+
T Consensus 24 ~~~~~w~r~~Slw~~~~~~sCC~iE~~a~~~~~yDi~RfGi~~~~~sPR~aDillVeG~VT~~m~~~l~~~~e~~p~pk~ 103 (180)
T PRK14820 24 DSVIGLARKNSLWPLPFATSCCGIEFMATMASHYDLARFGSERPSFSPRQADMLMVMGTIAKKMAPVLKQVYLQMAEPRW 103 (180)
T ss_pred HHHHHHHhhCCCceeeecccHHHHHHHHhcCccccHHHhCccccCCCCccceEEEEEecCCcccHHHHHHHHHhcCCCCe
Confidence 56789999999999999989999999999999999999999 57899999999999999999999999999999999999
Q ss_pred EEeecccCCCCCcCCcCCccccCcceeeecceeccCCCCChhhhHHHHHHHHHHHhhh
Q psy5227 106 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYIPGCPPTAEALLYDYYSTMKILRDH 163 (693)
Q Consensus 106 vva~G~CA~~GGi~~~~~~~~~~~~~~v~vd~~ipGCPp~p~~i~~~l~~ll~~Lr~~ 163 (693)
|||+|+||++||+| .+|++..+++++++||++||||||+|++|+++|+++++.++++
T Consensus 104 VIAvGaCA~~GGi~-~~y~~~~~v~~~ipVDv~IPGCPP~Pe~il~~l~~l~~~i~~~ 160 (180)
T PRK14820 104 VVAVGACASSGGIF-DTYSVLQGIDRIIPVDVYVPGCPPRPEQIIDGVMRVQELVKNE 160 (180)
T ss_pred EEEEecccccCCcc-ccccccccccccccccEEecCCCCCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999 6899999999999999999999999999999999999999865
No 30
>PRK14814 NADH dehydrogenase subunit B; Provisional
Probab=100.00 E-value=2.5e-37 Score=296.09 Aligned_cols=137 Identities=50% Similarity=0.994 Sum_probs=130.5
Q ss_pred ccccccccccccccccCCCCCchHHHHHhhcCCccccccccc-eeccCCCCccEEEEccccCCCcHHHHHHHHHHcCCCc
Q psy5227 26 GDKLINWTRTSSMWPMTFGLACCAIEMMHAGASRYDLDRFGI-MFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMTEPK 104 (693)
Q Consensus 26 ~~~rir~~r~~~lw~~~~~c~gc~~e~l~~~~~~~d~~~~~~-~~~~~p~~~Dil~veG~v~~~~~~~~~~~~~~~~~~~ 104 (693)
-+..+||+|++|+|+++++++||.+|+.++..+.||++|||+ .++++|||+||++|||+||++|.+.++++|++||+||
T Consensus 23 ~~~~~~w~r~~Slw~~~~~~~CC~iE~~~~~~~~yD~eRfGi~~~~~sPR~ADvllVtG~VT~~m~~~l~~~yeqmp~pk 102 (186)
T PRK14814 23 LESVIQWGRSFSLWPYPFATACCGIEYMSTACSDYDIARFGAERPSFSPRQADMILVLGTITYKMAPVLRQIYDQMAEPK 102 (186)
T ss_pred HHHHHHHHHhCCCceeeeCCccHHHHHHHhcCccccHHHhCccccCCCcccceEEEEeccCchhhHHHHHHHHHhcCCCC
Confidence 456789999999999999999999999999999999999999 5799999999999999999999999999999999999
Q ss_pred eEEeecccCCCCCcCCcCCccccCcceeeecceeccCCCCChhhhHHHHHHHHHHHhhh
Q psy5227 105 WVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYIPGCPPTAEALLYDYYSTMKILRDH 163 (693)
Q Consensus 105 ~vva~G~CA~~GGi~~~~~~~~~~~~~~v~vd~~ipGCPp~p~~i~~~l~~ll~~Lr~~ 163 (693)
+|||+|+||++||+|+ +|+...|+++++|||++||||||+|++|++++..+++.++.+
T Consensus 103 ~VIAvGsCA~~GGi~~-~y~~~~gv~~vvpVDv~IPGCPP~Pe~il~~l~~L~~~i~~~ 160 (186)
T PRK14814 103 FVISVGACASSGGMFH-TYGVLQGVDRILPVDVYVPGCPPRPEAILDALVKLQTKLKTQ 160 (186)
T ss_pred eEEEeccccccCCccC-cCCCCcCccccccccEEecCCCCCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999996 688889999999999999999999999999999999988854
No 31
>PRK14819 NADH dehydrogenase subunit B; Provisional
Probab=100.00 E-value=3.7e-37 Score=304.44 Aligned_cols=134 Identities=60% Similarity=1.138 Sum_probs=129.3
Q ss_pred cccccccccccccccCCCCCchHHHHHhhcCCccccccccc-eeccCCCCccEEEEccccCCCcHHHHHHHHHHcCCCce
Q psy5227 27 DKLINWTRTSSMWPMTFGLACCAIEMMHAGASRYDLDRFGI-MFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMTEPKW 105 (693)
Q Consensus 27 ~~rir~~r~~~lw~~~~~c~gc~~e~l~~~~~~~d~~~~~~-~~~~~p~~~Dil~veG~v~~~~~~~~~~~~~~~~~~~~ 105 (693)
+..+||+|++|+|+++|+|+||++|++++..+.||++|||+ .++++|||+||++|||+||++|.+.+.++|++||+||+
T Consensus 22 ~~~~~W~r~~Slw~~~~gt~CC~iEila~l~p~yDieRFGi~~~~~sPRhADIlLVtG~VT~km~~~L~rlyeqmP~PK~ 101 (264)
T PRK14819 22 NRFYNWGRRSSVWPMAFGLACCAIEMMATGLSRYDLARFGAELFRASPRQADLMIVAGTVTKKMAPQVVRLYNQMPEPRY 101 (264)
T ss_pred HHHHHHHHhCCcceeeeCCcccHHHHHHhccccccHHHhCcccccCCCCcceEEEEecCCchhhHHHHHHHHHhccCCCe
Confidence 56789999999999999999999999999999999999999 58999999999999999999999999999999999999
Q ss_pred EEeecccCCCCCcCCcCCccccCcceeeecceeccCCCCChhhhHHHHHHHHHHH
Q psy5227 106 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYIPGCPPTAEALLYDYYSTMKIL 160 (693)
Q Consensus 106 vva~G~CA~~GGi~~~~~~~~~~~~~~v~vd~~ipGCPp~p~~i~~~l~~ll~~L 160 (693)
|||+|+||++||+|+++|++..+++++|+||++||||||+|++|+++|.++++.+
T Consensus 102 VIAvGaCA~~GGIf~~sY~v~~gId~vIPVDv~IPGCPP~Pe~Il~gLl~L~~ki 156 (264)
T PRK14819 102 VISMGACATSGGPFRDGYNVLRGIDLLIPVDVYIPGCPPRPEALLHALMTLQKQI 156 (264)
T ss_pred EEEEccccccCCccccCCCccCCccccccccEEecCCCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999998888654
No 32
>COG0852 NuoC NADH:ubiquinone oxidoreductase 27 kD subunit [Energy production and conversion]
Probab=99.97 E-value=1.5e-32 Score=264.64 Aligned_cols=113 Identities=48% Similarity=0.902 Sum_probs=102.6
Q ss_pred HHHHHHHHhhhcccccccccccccccccccccccCCCCCCCCCcEEEEEEeeccccCeEEEEEEeecCCCCCCcCccccc
Q psy5227 153 YYSTMKILRDHVNFRFEQLIDLCGIDYSIYNKNINSDNSNKNLRFAIVLHLLSLNYNWRLRVRVFAENNELPRLHSITSL 232 (693)
Q Consensus 153 l~~ll~~Lr~~~~~~fd~L~~~~~vd~~~~~~~~~~~~~~~~~~~~~vyh~~~~~~~~~l~v~v~~~~~~~~~~~s~~~~ 232 (693)
+..++.+||+.. |++|.++|||||+.. +.+|+++|||.|+..+.+++|||.+++ ++|++||+++|
T Consensus 40 ~~~~l~~Lk~~~---f~~l~d~~gvD~~~~-----------~~~FevvYhL~s~~~~~~v~vkv~~~~-~~~~vpSv~~I 104 (176)
T COG0852 40 LIDVLKALKDEG---FDHLLDLTGVDYPQE-----------TERFEVVYHLLSYKDNRRVRVKVRLSE-DDPHVPSVTDI 104 (176)
T ss_pred HHHHHHHHhhhh---HHHHHHhhccccccc-----------CCcEEEEEEeeecCCCCEEEEEEEcCC-CCCcCCchHHh
Confidence 336678888765 999999999999832 223999999999999999999999988 67899999999
Q ss_pred ccccchhhhhhccccCceecCCCCCccccccCCCCCCCCCCCCcchhh
Q psy5227 233 WSSANWYEREAFDLFGIFFDGHDDLRRLLTDYGFVGHPFRKDFPVIEI 280 (693)
Q Consensus 233 ~~~a~~~Ere~~d~~Gi~~~g~pd~r~~~~~~~~~~~plrk~~~~~~~ 280 (693)
||+|+|+|||+||||||.|+|||||||++++++|.+||||||||..+.
T Consensus 105 ~~~A~W~ERE~yDmfGI~FeGHP~LrRilm~~~~~GhPLRKDfpl~~~ 152 (176)
T COG0852 105 WPAANWYEREAYDMFGIVFEGHPDLRRILMPDDWEGHPLRKDFPLRGY 152 (176)
T ss_pred cccCchhhhhhheeeeeEEcCCcccccccCCCCCCCCCccCCcCCCcc
Confidence 999999999999999999999999999999999999999999998763
No 33
>CHL00012 ndhJ NADH dehydrogenase subunit J
Probab=99.97 E-value=3.8e-31 Score=248.45 Aligned_cols=121 Identities=30% Similarity=0.537 Sum_probs=104.7
Q ss_pred CChhhhHHHHHHHHHHHhhhcccccccccccccccccccccccCCCCCCCCCcEEEEEEeeccccC----eEEEEEEeec
Q psy5227 144 PTAEALLYDYYSTMKILRDHVNFRFEQLIDLCGIDYSIYNKNINSDNSNKNLRFAIVLHLLSLNYN----WRLRVRVFAE 219 (693)
Q Consensus 144 p~p~~i~~~l~~ll~~Lr~~~~~~fd~L~~~~~vd~~~~~~~~~~~~~~~~~~~~~vyh~~~~~~~----~~l~v~v~~~ 219 (693)
..|+.+. .++.+||+ .+|++|.++||+||. .+++|+++||+.|+..+ .+++|+|.++
T Consensus 31 V~~~~l~----~v~~~Lk~---~gf~~L~~lt~vD~~------------~~~~fevvYhl~s~~~~~~~~~~v~vkv~ip 91 (158)
T CHL00012 31 IKPEDWH----SIAVILYV---YGYNYLRSQCAYDVA------------PGGLLASVYHLTRIQYGVDQPEEVCIKVFVP 91 (158)
T ss_pred EcHHHHH----HHHHHHHH---cCCCceeEEEEEEcC------------CCCeEEEEEEEEecccCCCCceEEEEEEEcC
Confidence 4566444 56777874 579999999999985 25689999999999653 6899999988
Q ss_pred CCCCCCcCcccccccccchhhhhhccccCceecCCCCCccccccCCCCCCCCCCCCcchhhcccc
Q psy5227 220 NNELPRLHSITSLWSSANWYEREAFDLFGIFFDGHDDLRRLLTDYGFVGHPFRKDFPVIEIKSYK 284 (693)
Q Consensus 220 ~~~~~~~~s~~~~~~~a~~~Ere~~d~~Gi~~~g~pd~r~~~~~~~~~~~plrk~~~~~~~~~~~ 284 (693)
+ ++|++|||+++||+|+|+|||+||||||.|+||||+|||++|++|++|||||||+.++...++
T Consensus 92 r-d~p~ipSi~~i~p~A~w~ERE~~DmfGI~F~GhPdlrrillpedw~g~PLRKD~~~~~~~e~~ 155 (158)
T CHL00012 92 R-KNPRIPSVFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQ 155 (158)
T ss_pred C-CCCCCCchHHhhhCCChHHHHHHHHcCcccCCCCCCccccCCCCCCCCCCCCCCCCCCceeec
Confidence 7 689999999999999999999999999999999999999999999999999999988754443
No 34
>PRK07735 NADH dehydrogenase subunit C; Validated
Probab=99.97 E-value=2.7e-31 Score=278.72 Aligned_cols=111 Identities=41% Similarity=0.774 Sum_probs=103.5
Q ss_pred HHHHHHHHHhhhcccccccccccccccccccccccCCCCCCCCCcEEEEEEeeccccCeEEEEEEeecCCCCCCcCcccc
Q psy5227 152 DYYSTMKILRDHVNFRFEQLIDLCGIDYSIYNKNINSDNSNKNLRFAIVLHLLSLNYNWRLRVRVFAENNELPRLHSITS 231 (693)
Q Consensus 152 ~l~~ll~~Lr~~~~~~fd~L~~~~~vd~~~~~~~~~~~~~~~~~~~~~vyh~~~~~~~~~l~v~v~~~~~~~~~~~s~~~ 231 (693)
.|..++.+|+++..++|++|+++|||||+ ++|+|+|||+|+..+.+|+|+|.+++ ++|.||||++
T Consensus 315 ~L~eV~~~Lrd~~~l~Fd~LsdLtGVDy~--------------~rFeVVYhLlS~~~n~rV~VKv~l~~-d~P~VPSIt~ 379 (430)
T PRK07735 315 KYYEVAELLRFHEQLAFDYLSELHGTDFV--------------THMEVYVHLYSYGKRQSVAVKVKLDR-EAPQVESVTP 379 (430)
T ss_pred HHHHHHHHHHhCcccCCCeeeeEEeEecC--------------CcEEEEEEEEecCCCCEEEEEEecCC-CCCCCCChHH
Confidence 45677889999888999999999999986 38999999999998899999999876 6789999999
Q ss_pred cccccchhhhhhccccCceecCCCCCccccccCCCCCCCCCCCCcc
Q psy5227 232 LWSSANWYEREAFDLFGIFFDGHDDLRRLLTDYGFVGHPFRKDFPV 277 (693)
Q Consensus 232 ~~~~a~~~Ere~~d~~Gi~~~g~pd~r~~~~~~~~~~~plrk~~~~ 277 (693)
+||+|+|||||+||||||.|+|||||||||+|++|++|||||||+.
T Consensus 380 I~P~AnW~EREa~DMFGI~FeGHPDLRRILLpddw~GhPLRKDF~~ 425 (430)
T PRK07735 380 LWKGANWPEREAYDLLGIVFKGHPNLSRILLPDDWVGHPLRKDYEP 425 (430)
T ss_pred hhccCChHHHHHHHHhCcccCCCCCCccCCCCCCCCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999975
No 35
>PRK07785 NADH dehydrogenase subunit C; Provisional
Probab=99.97 E-value=8.3e-31 Score=261.27 Aligned_cols=117 Identities=35% Similarity=0.652 Sum_probs=106.9
Q ss_pred HHHHHHHHHhhhcccccccccccccccccccccccCCCCCCCCCcEEEEEEeeccccCeEEEEEEeecCCCCCCcCcccc
Q psy5227 152 DYYSTMKILRDHVNFRFEQLIDLCGIDYSIYNKNINSDNSNKNLRFAIVLHLLSLNYNWRLRVRVFAENNELPRLHSITS 231 (693)
Q Consensus 152 ~l~~ll~~Lr~~~~~~fd~L~~~~~vd~~~~~~~~~~~~~~~~~~~~~vyh~~~~~~~~~l~v~v~~~~~~~~~~~s~~~ 231 (693)
.+..++++||++.+++|++|+++|||||+.. .+.+|+++|||.|+..+.+++++|.+++ ++|++|||++
T Consensus 99 ~l~~v~~~Lkd~~~l~F~~l~~vtgVDyp~~----------~g~~f~vvYhL~S~~~~~~v~lkv~vp~-~~p~iPSIt~ 167 (235)
T PRK07785 99 HLVEVAQTLRDDPALRFELCLGVSGVHYPHD----------TGRELHAVYHLTSITHNRRIRLEVAVPD-ADPHIPSLVS 167 (235)
T ss_pred HHHHHHHHHHhCccCCcceEeeEEEEecCCC----------CCCEEEEEEEeccCCCCeEEEEEEeccC-CCCcCCcchh
Confidence 4556788899988899999999999999721 2458999999999999999999999887 6799999999
Q ss_pred cccccchhhhhhccccCceecCCCCCccccccCCCCCCCCCCCCcchh
Q psy5227 232 LWSSANWYEREAFDLFGIFFDGHDDLRRLLTDYGFVGHPFRKDFPVIE 279 (693)
Q Consensus 232 ~~~~a~~~Ere~~d~~Gi~~~g~pd~r~~~~~~~~~~~plrk~~~~~~ 279 (693)
+||+|+|+|||+||||||.|+||||+||||+|++|.+|||||||+..+
T Consensus 168 I~P~A~W~EREvyDmfGI~FeGHPDLRRiLlpddw~ghPLRKDyPl~G 215 (235)
T PRK07785 168 VYPTNDWHERETYDFFGIVFDGHPALTRIEMPDDWVGHPQRKDYPLGG 215 (235)
T ss_pred hcccCCchHHHHHHhcCceeCCCCCCccccCCCCCCCCCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999865
No 36
>TIGR01961 NuoC_fam NADH (or F420H2) dehydrogenase, subunit C. This model describes the C subunit of the NADH dehydrogenase complex I in bacteria, as well as many instances of the corresponding mitochondrial subunit (NADH dehydrogenase subunit 9) and of the F420H2 dehydrogenase in Methanosarcina. Complex I contains subunits designated A-N. This C subunit often occurs as a fusion protein with the D subunit. This model excludes the NAD(P)H and plastoquinone-dependent form of chloroplasts and
Probab=99.95 E-value=6.3e-28 Score=222.17 Aligned_cols=113 Identities=46% Similarity=0.899 Sum_probs=99.0
Q ss_pred HHHHHHHHHhhhcccccccccccccccccccccccCCCCCCCCCcEEEEEEeeccccCeEEEEEEeecCCCCCCcCcccc
Q psy5227 152 DYYSTMKILRDHVNFRFEQLIDLCGIDYSIYNKNINSDNSNKNLRFAIVLHLLSLNYNWRLRVRVFAENNELPRLHSITS 231 (693)
Q Consensus 152 ~l~~ll~~Lr~~~~~~fd~L~~~~~vd~~~~~~~~~~~~~~~~~~~~~vyh~~~~~~~~~l~v~v~~~~~~~~~~~s~~~ 231 (693)
.+.+++..|++. ..+|.+|.+++|+|++ .+++|+++||+.+...+..+.+++.+++ +++ +|||++
T Consensus 9 ~l~~v~~~l~~~-~~~~~~l~~i~a~D~~------------~~~~~~~~y~~~~~~~~~~~~~~~~~~~-~~~-ipSis~ 73 (121)
T TIGR01961 9 QLLEVLTFLKDP-ALGFELLTDVSGVDYP------------KEKRFEVVYHLLSIKKNRRIRLKVRLSE-DDP-VPSLTS 73 (121)
T ss_pred HHHHHHHHHHhc-cCCCCeEeEEEEEecC------------CCCeEEEEEEEEeCCCCcEEEEEEECCC-CCC-CCchHH
Confidence 355667777754 5679999999999975 2457999999999988888889888876 456 999999
Q ss_pred cccccchhhhhhccccCceecCCCCCccccccCCCCCCCCCCCCcchh
Q psy5227 232 LWSSANWYEREAFDLFGIFFDGHDDLRRLLTDYGFVGHPFRKDFPVIE 279 (693)
Q Consensus 232 ~~~~a~~~Ere~~d~~Gi~~~g~pd~r~~~~~~~~~~~plrk~~~~~~ 279 (693)
+||+|+|+|||+||||||.|+||||+|||++|++|++|||||||+..|
T Consensus 74 i~p~A~~~EREi~DmfGi~f~Ghpd~rr~ll~~~~~~~PLrKd~~~~~ 121 (121)
T TIGR01961 74 VFPTANWYERETYDMYGIVFDGHPDLRRILMPDDFEGHPLRKDYPLTG 121 (121)
T ss_pred hhhcccHHHHHHHhhcCcEeCCCCCCccccCCCCCCCCCcccCcCCCC
Confidence 999999999999999999999999999999999999999999998653
No 37
>PRK06074 NADH dehydrogenase subunit C; Provisional
Probab=99.94 E-value=1.1e-27 Score=235.90 Aligned_cols=115 Identities=57% Similarity=1.043 Sum_probs=103.2
Q ss_pred HHHHHHHHHhhhcccccccccccccccccccccccCCCCCCCCCcEEEEEEeeccccCeEEEEEEeecCCCCCCcCcccc
Q psy5227 152 DYYSTMKILRDHVNFRFEQLIDLCGIDYSIYNKNINSDNSNKNLRFAIVLHLLSLNYNWRLRVRVFAENNELPRLHSITS 231 (693)
Q Consensus 152 ~l~~ll~~Lr~~~~~~fd~L~~~~~vd~~~~~~~~~~~~~~~~~~~~~vyh~~~~~~~~~l~v~v~~~~~~~~~~~s~~~ 231 (693)
.+.+++.+|+++..++|.+|.+++|+|++. .+++|+++|||.+...+.++++++.+++ + |++|||++
T Consensus 37 ~l~~v~~~L~~~~~~~f~~L~~l~avD~~~-----------~~~~f~vvY~l~s~~~~~~v~lk~~~~~-~-~~ipSIt~ 103 (189)
T PRK06074 37 KILEVLTFLRDDPELRFEQLIDLTGVDYPE-----------RGKRFEVVYHLLSYKHNVRLRVKVRAPE-D-PVVPSVVD 103 (189)
T ss_pred HHHHHHHHHHhCcccCCCeEEEEEEEecCC-----------CCCcEEEEEEEecCCCCeEEEEEEECCC-C-CCCCchHH
Confidence 455678888877557899999999999862 2468999999999988889999998877 4 89999999
Q ss_pred cccccchhhhhhccccCceecCCCCCccccccCCCCCCCCCCCCcchh
Q psy5227 232 LWSSANWYEREAFDLFGIFFDGHDDLRRLLTDYGFVGHPFRKDFPVIE 279 (693)
Q Consensus 232 ~~~~a~~~Ere~~d~~Gi~~~g~pd~r~~~~~~~~~~~plrk~~~~~~ 279 (693)
+||+|+|+|||+||||||.|+||||+|||++|++|++|||||||+..+
T Consensus 104 i~p~A~w~EREi~DmfGI~f~GhPdlrrlllpe~w~g~PLRKd~~~~~ 151 (189)
T PRK06074 104 IWPSANWYEREAYDLYGIVFEGHPDLRRILTDYGFEGHPLRKDFPLTG 151 (189)
T ss_pred hhhccChHHHHHHHhhCceeCCCCCCccccCCCCCCCCCcccCCCCCC
Confidence 999999999999999999999999999999999999999999998764
No 38
>PRK08491 NADH dehydrogenase subunit C; Provisional
Probab=99.94 E-value=1.4e-27 Score=242.19 Aligned_cols=111 Identities=36% Similarity=0.702 Sum_probs=99.1
Q ss_pred HHHHHHHHhhhcccccccccccccccccccccccCCCCCCCCCcEEEEEEeeccccCeEEEEEEeecCCCCCCcCccccc
Q psy5227 153 YYSTMKILRDHVNFRFEQLIDLCGIDYSIYNKNINSDNSNKNLRFAIVLHLLSLNYNWRLRVRVFAENNELPRLHSITSL 232 (693)
Q Consensus 153 l~~ll~~Lr~~~~~~fd~L~~~~~vd~~~~~~~~~~~~~~~~~~~~~vyh~~~~~~~~~l~v~v~~~~~~~~~~~s~~~~ 232 (693)
+..++.+|+ .++|++|.++||+||.. ..++|+++|||.|...+.+++|++.+++ + +.+|||+++
T Consensus 68 l~~V~~~Lk---~~gf~~L~~itaVD~~~-----------~~~~FeVvYhL~s~~~~~~V~VKv~v~~-~-~~IpSIt~I 131 (263)
T PRK08491 68 NFKVLKILK---HLGYECLSEMSAIDFLA-----------KKGGFEVFYQLLSMSKRKRVRVKCFLKE-K-EALQSVSFL 131 (263)
T ss_pred HHHHHHHHH---HcCCCeEEEEEeEecCC-----------CCCcEEEEEEEeeCCCCcEEEEEEECCC-C-CCCCchHHh
Confidence 445677777 46799999999999962 2468999999999988889999999876 3 479999999
Q ss_pred ccccchhhhhhccccCceecCCCCCccccccCCCCCCCCCCCCcchh
Q psy5227 233 WSSANWYEREAFDLFGIFFDGHDDLRRLLTDYGFVGHPFRKDFPVIE 279 (693)
Q Consensus 233 ~~~a~~~Ere~~d~~Gi~~~g~pd~r~~~~~~~~~~~plrk~~~~~~ 279 (693)
||+|+|+|||+||||||.|+||||+||||||++|.+||||||||..+
T Consensus 132 fpsAnW~ERE~~DMFGI~FeGHPDlRRiLLpedw~ghPLRKdfPl~g 178 (263)
T PRK08491 132 FKSANWSEREMYDMFGIVINNHPYLKRILMPDDWVGHPLLKSYPLKG 178 (263)
T ss_pred hhcCCchHHHHHHhhCceeCCCCCCcccCCCCCCCCCCcCCCCCCCC
Confidence 99999999999999999999999999999999999999999998865
No 39
>PF00329 Complex1_30kDa: Respiratory-chain NADH dehydrogenase, 30 Kd subunit; InterPro: IPR001268 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. The 30 kDa subunit from NADH:ubiquinone oxidoreductase is found in both eukaryotes and prokaryotes. In mammals and in Neurospora crassa, it is nuclear-encoded as a precursor form with a transit peptide, while in Paramecium (protein P1), in the Dictyostelium discoideum (Slime mold) it is mitochondrial-encoded and it is chloroplast-encoded in various higher plants. It is also present in bacteria.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0055114 oxidation-reduction process; PDB: 2YBB_5 3IAS_E 2FUG_E 3I9V_5 3M9S_E 3IAM_5 3MCR_A.
Probab=99.94 E-value=1.7e-27 Score=212.93 Aligned_cols=102 Identities=42% Similarity=0.749 Sum_probs=83.9
Q ss_pred HHHHHhhhcccccccccccccccccccccccCCCCCCCCCcEEEEEEeeccccCeEEEEEEeecCCCCCCcCcccccccc
Q psy5227 156 TMKILRDHVNFRFEQLIDLCGIDYSIYNKNINSDNSNKNLRFAIVLHLLSLNYNWRLRVRVFAENNELPRLHSITSLWSS 235 (693)
Q Consensus 156 ll~~Lr~~~~~~fd~L~~~~~vd~~~~~~~~~~~~~~~~~~~~~vyh~~~~~~~~~l~v~v~~~~~~~~~~~s~~~~~~~ 235 (693)
++++||++ .|.+|..+||+|+. .+++|+++|||.+...+..+.+++.+++ ++|++|||+++||+
T Consensus 2 ~~~~L~~~---~~~~l~~i~~~D~~------------~~~~~~v~y~~~~~~~~~~~~v~~~v~~-~~~~ipSit~i~p~ 65 (103)
T PF00329_consen 2 VAKFLKDE---GGARLVTITAVDYP------------EEGRFEVVYHFASDGDGTLVRVKVKVPR-ENPEIPSITPIFPA 65 (103)
T ss_dssp HHHHHHHT---T--EEEEEEEEE-T------------TSTSEEEEEEEEETTTTEEEEEEEEE-T-TS-EEE--TTT-TT
T ss_pred HHHHHHHC---CCCeEEEEEEEECC------------CCCeEEEEEEEEECCCCcEEEEEEEecc-CCCcccceeEEEcC
Confidence 57788876 68999999999997 2348999999999999888999999986 78999999999999
Q ss_pred cchhhhhhccccCceecCCCCCccccccCCCCCCCCCC
Q psy5227 236 ANWYEREAFDLFGIFFDGHDDLRRLLTDYGFVGHPFRK 273 (693)
Q Consensus 236 a~~~Ere~~d~~Gi~~~g~pd~r~~~~~~~~~~~plrk 273 (693)
|+|+|||+||||||.|+||||+|||++|++|++|||||
T Consensus 66 A~~~ERE~~DmfGI~f~GhPd~rrlll~~~~~~~PLrK 103 (103)
T PF00329_consen 66 ADWYEREIYDMFGIRFEGHPDLRRLLLPEDWPGHPLRK 103 (103)
T ss_dssp HHHHHHHHHHHCHHECCT-CCGS-SSSSTTSSS-TTST
T ss_pred ceecCcHHHhhcCCEeCCCCCCccccCCCCCCCCCCCC
Confidence 99999999999999999999999999999999999998
No 40
>PRK12494 NADH dehydrogenase subunit J; Provisional
Probab=99.94 E-value=7.4e-27 Score=225.91 Aligned_cols=121 Identities=31% Similarity=0.590 Sum_probs=101.5
Q ss_pred CChhhhHHHHHHHHHHHhhhcccccccccccccccccccccccCCCCCCCCCcEEEEEEeeccccC----eEEEEEEeec
Q psy5227 144 PTAEALLYDYYSTMKILRDHVNFRFEQLIDLCGIDYSIYNKNINSDNSNKNLRFAIVLHLLSLNYN----WRLRVRVFAE 219 (693)
Q Consensus 144 p~p~~i~~~l~~ll~~Lr~~~~~~fd~L~~~~~vd~~~~~~~~~~~~~~~~~~~~~vyh~~~~~~~----~~l~v~v~~~ 219 (693)
..++.+. .+++.|++ ..|++|..++++|+. .+.+|.++||+.|+..+ .++++||.++
T Consensus 45 V~~~~l~----~v~~~L~~---~g~~~l~~~~~vD~~------------~~~~~~vvY~l~s~~~~~~~~~~v~lkv~~~ 105 (172)
T PRK12494 45 VEPDFLL----PIATALYA---YGFNYLQCQGGYDEG------------PGKELVSFYHLIKVSDNADKPREVRLKVFLP 105 (172)
T ss_pred EcHHHHH----HHHHHHHH---CCCCEEEEEEeEccC------------CCCEEEEEEEEccccccCCCceEEEEEEEcc
Confidence 5566444 45666664 368999999999985 24579999999987543 5778888877
Q ss_pred CCCCCCcCcccccccccchhhhhhccccCceecCCCCCccccccCCCCCCCCCCCCcchhhcccc
Q psy5227 220 NNELPRLHSITSLWSSANWYEREAFDLFGIFFDGHDDLRRLLTDYGFVGHPFRKDFPVIEIKSYK 284 (693)
Q Consensus 220 ~~~~~~~~s~~~~~~~a~~~Ere~~d~~Gi~~~g~pd~r~~~~~~~~~~~plrk~~~~~~~~~~~ 284 (693)
+ ++|.+|||+++||+|+|+|||+||||||.|+||||+||||+|++|++|||||||+..+...++
T Consensus 106 ~-~~p~iPSIt~i~p~A~w~EREi~DmfGI~FeGHPDlRriLlpe~w~~~PLRKDf~~~~~~~~~ 169 (172)
T PRK12494 106 R-DDPRVPSVYWIWKGADWQERETYDMYGINFEGHPNLKRILMPEDWVGWPLRKDYIQPDFYELQ 169 (172)
T ss_pred C-CCCCCCchhHhhhcCChHHHHHHHhcCceeCCCCCCccccCCCCCCCCCCCCCCCCCCceeee
Confidence 6 568999999999999999999999999999999999999999999999999999998755443
No 41
>PF01058 Oxidored_q6: NADH ubiquinone oxidoreductase, 20 Kd subunit; InterPro: IPR006137 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 20 kDa (in mammals) [], which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 4Fe-4S iron-sulphur cluster. The 20 kDa subunit has been found to be nuclear encoded, as a precursor form with a transit peptide in mammals, and in Neurospora crassa. It is and chloroplast encoded in various higher plants (gene ndhK or psbG).; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0048038 quinone binding, 0051539 4 iron, 4 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 3MYR_E 3RGW_S 2FUG_F 3IAS_6 3I9V_F 3IAM_F 2YBB_6 3M9S_F 2FRV_G 1YQ9_B ....
Probab=99.93 E-value=1.1e-27 Score=223.24 Aligned_cols=112 Identities=33% Similarity=0.525 Sum_probs=89.8
Q ss_pred CCchHHHHHhhcCCcccc-----ccccceeccCCC---------CccEEEEccccCCCcHHHHHHHHHHcCCCceEEeec
Q psy5227 45 LACCAIEMMHAGASRYDL-----DRFGIMFRPSPR---------QSDVMIVAGTLCNKMAPALRKVYDQMTEPKWVISMG 110 (693)
Q Consensus 45 c~gc~~e~l~~~~~~~d~-----~~~~~~~~~~p~---------~~Dil~veG~v~~~~~~~~~~~~~~~~~~~~vva~G 110 (693)
|+||++||++...+.+|+ .+|+..+..+++ ++||++|||+|+.++.+.++++++++++||+|||+|
T Consensus 1 C~GC~~s~~~~~~~~~dll~~i~~~~~~~l~~~~~~~~~~~~~~~~diliVeG~v~~~~~~~~e~~~~~~~~a~~vIAvG 80 (131)
T PF01058_consen 1 CTGCTISFLALEPSLLDLLELIEIRYHPSLMASPGEQDEENGEEEADILIVEGSVPRNMEEALEWLKELRPKAKAVIAVG 80 (131)
T ss_dssp -SHHHHHHTTTTTTHHHHHHTEEEEEETTT-SS-HHHHHHHHTTTTEEEEEESBEETGGEEHHHHHHHHHGCSSEEEEEH
T ss_pred CCCcHHHHhhCCCCHHHHHhhhHHHhCCEehhhcCCccccccccCceEEEEEeeccCCchHHHHHHHHHccCCceeEcCC
Confidence 999999998888888896 444443444455 999999999999999999999999999999999999
Q ss_pred ccCCCCCcCC--cCCcc---ccCcceeeecceeccCCCCChhhhHHHHHHH
Q psy5227 111 SCANGGGYYH--YSYSV---VRGCDRIVPVDVYIPGCPPTAEALLYDYYST 156 (693)
Q Consensus 111 ~CA~~GGi~~--~~~~~---~~~~~~~v~vd~~ipGCPp~p~~i~~~l~~l 156 (693)
+||++|||++ .+++. ..++.++++||++||||||+|+||+++|.+|
T Consensus 81 tCA~~GGi~~~~~~~~~~~~~~~~~~~~~VDi~IpGCPp~pd~i~~~l~~L 131 (131)
T PF01058_consen 81 TCASFGGIPAARNNPSVGDSVGPLLEVVPVDINIPGCPPHPDWILETLLAL 131 (131)
T ss_dssp HHHHH-TGGGSTTSTTEEE-HHHHHGCS-ECEEE-SSS--HHHHHHHHHHH
T ss_pred CccccCCcccccccccccccccCcCCCccEEEEeeCCCCCHHHHHHHHhhC
Confidence 9999999994 44443 4578888999999999999999999998765
No 42
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=99.93 E-value=4.5e-26 Score=231.54 Aligned_cols=124 Identities=23% Similarity=0.465 Sum_probs=107.7
Q ss_pred cccccccCCCCCchHHHHHhhcCCcccc-ccc-cceeccC------CCCccEEEEccccCCCcHHHHHHHHHHcCCCceE
Q psy5227 35 TSSMWPMTFGLACCAIEMMHAGASRYDL-DRF-GIMFRPS------PRQSDVMIVAGTLCNKMAPALRKVYDQMTEPKWV 106 (693)
Q Consensus 35 ~~~lw~~~~~c~gc~~e~l~~~~~~~d~-~~~-~~~~~~~------p~~~Dil~veG~v~~~~~~~~~~~~~~~~~~~~v 106 (693)
.+.+|++..+|+||++||+++..+.+|+ +.+ .+.|+++ ..++||++|||+|++++.+.++.+++++++||+|
T Consensus 2 ~~v~~~~~~~C~GC~~s~l~~~~~~~~ll~~~i~~~y~~~~~~~~~~~~~dil~VeG~i~~~~~~~~~~~~~~~~~ak~v 81 (228)
T TIGR03294 2 ITVGYVHLSGCTGCLVSLTDNYEGLLDILDNIADLVYCQTLADAREIPEMDVALVEGSVCLQDEHSLEEIKELREKAKVV 81 (228)
T ss_pred ceEEEEECCCCCChHHHHHccCCcHHHHHHHhhHheecHhhhhhccCCCccEEEEeCCCCCCccHHHHHHHHHhccCCEE
Confidence 3578999999999999999998887774 444 6666663 2359999999999999999999999999999999
Q ss_pred EeecccCCCCCcCCcCCc---------cccCcceeeecceeccCCCCChhhhHHHHHHHHH
Q psy5227 107 ISMGSCANGGGYYHYSYS---------VVRGCDRIVPVDVYIPGCPPTAEALLYDYYSTMK 158 (693)
Q Consensus 107 va~G~CA~~GGi~~~~~~---------~~~~~~~~v~vd~~ipGCPp~p~~i~~~l~~ll~ 158 (693)
||+||||++||||+.+++ ..++++++|+||++||||||+|++|+++|.+++.
T Consensus 82 VA~GtCA~~GGi~~~~~~~~~~~~~~~~~~~~~~~V~vdi~IpGCPp~p~~i~~~l~~ll~ 142 (228)
T TIGR03294 82 VALGACAATGNFTRYSRGGQQAQPQHESFVPITDVIDVDLAIPGCPPSPEAIRNVCVALLN 142 (228)
T ss_pred EEeecccccCCcccccCCcccCCCCCCCCcCHHHcccCCEEeeCCCCCHHHHHHHHHHHHc
Confidence 999999999999876543 3578899999999999999999999999988763
No 43
>KOG1713|consensus
Probab=99.92 E-value=1.4e-26 Score=212.14 Aligned_cols=112 Identities=46% Similarity=0.931 Sum_probs=103.9
Q ss_pred HHHHHHhhhcccccccccccccccccccccccCCCCCCCCCcEEEEEEeeccccCeEEEEEEeecCCCCCCcCccccccc
Q psy5227 155 STMKILRDHVNFRFEQLIDLCGIDYSIYNKNINSDNSNKNLRFAIVLHLLSLNYNWRLRVRVFAENNELPRLHSITSLWS 234 (693)
Q Consensus 155 ~ll~~Lr~~~~~~fd~L~~~~~vd~~~~~~~~~~~~~~~~~~~~~vyh~~~~~~~~~l~v~v~~~~~~~~~~~s~~~~~~ 234 (693)
.++.||+.....+|..+.|++|+|.+. .+++|+++|.++|...+.+++|++..++ -+| |||+.++|+
T Consensus 41 ~vl~flk~h~y~r~q~~~Diagvdvp~-----------rk~rfevvynl~svr~nsrirVkt~tde-~tp-I~sv~~vfk 107 (191)
T KOG1713|consen 41 PVLLFLKGHTYARFQNLYDIAGVDVPT-----------RKNRFEVVYNLLSVRYNSRIRVKTYTDE-STP-IDSVVSVFK 107 (191)
T ss_pred EEEeeeecccceeeeEeEeecCCCccc-----------ccceeEEeeeeccccccceEEEEEeccc-Ccc-CCcceEeee
Confidence 457899999999999999999999873 3568999999999999999999999876 456 999999999
Q ss_pred ccchhhhhhccccCceecCCCCCccccccCCCCCCCCCCCCcchh
Q psy5227 235 SANWYEREAFDLFGIFFDGHDDLRRLLTDYGFVGHPFRKDFPVIE 279 (693)
Q Consensus 235 ~a~~~Ere~~d~~Gi~~~g~pd~r~~~~~~~~~~~plrk~~~~~~ 279 (693)
+|+|+|||+||||||.|.+||||||++++++|.|||||||||..+
T Consensus 108 sad~~EREv~DM~GV~f~nHPdLrRIltdygfeGhPlRKDyplsg 152 (191)
T KOG1713|consen 108 SADWQEREVWDMFGVTFDNHPDLRRILTDYGFEGHPLRKDYPLSG 152 (191)
T ss_pred cCChHHHHHHhhhceeccCCcchhhhcccccccCCcccccCCCCC
Confidence 999999999999999999999999999999999999999999865
No 44
>PRK10468 hydrogenase 2 small subunit; Provisional
Probab=99.89 E-value=1.6e-23 Score=221.21 Aligned_cols=128 Identities=18% Similarity=0.348 Sum_probs=110.0
Q ss_pred ccccccccccCCCCCchHHHHHhhcCCccc--cccc-cceeccCC-------------------CCccEEEEccccCCCc
Q psy5227 32 WTRTSSMWPMTFGLACCAIEMMHAGASRYD--LDRF-GIMFRPSP-------------------RQSDVMIVAGTLCNKM 89 (693)
Q Consensus 32 ~~r~~~lw~~~~~c~gc~~e~l~~~~~~~d--~~~~-~~~~~~~p-------------------~~~Dil~veG~v~~~~ 89 (693)
..+...||++..+|+||++||+++..|.++ +.++ .+.|+++- ..-|||+|||+|+.++
T Consensus 46 ~~r~~viWLq~~~CtGcs~SlL~a~~P~~~~ll~~~i~l~yH~tl~aa~G~~a~~~l~~~~~~~~~~~ILvVEGaIp~~~ 125 (371)
T PRK10468 46 PQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKD 125 (371)
T ss_pred CCCCcEEEEeCCCCCCcHHHHhccCCCCHHHHHhcCceeeeccHHHHHhHHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 466789999999999999999999998776 4444 56777762 2368999999999874
Q ss_pred ---------HHHHHHHHHHcCCCceEEeecccCCCCCcCCcCCccc--cCcceeeecc--eeccCCCCChhhhHHHHHHH
Q psy5227 90 ---------APALRKVYDQMTEPKWVISMGSCANGGGYYHYSYSVV--RGCDRIVPVD--VYIPGCPPTAEALLYDYYST 156 (693)
Q Consensus 90 ---------~~~~~~~~~~~~~~~~vva~G~CA~~GGi~~~~~~~~--~~~~~~v~vd--~~ipGCPp~p~~i~~~l~~l 156 (693)
++.++.+++++++||+|||+||||++|||++..++++ .+++++++.. ||||||||||+||+++|+++
T Consensus 126 ~G~y~~~gg~~~~e~l~~~a~~A~aVVAvGtCAs~GGI~aa~pnptga~gv~~~l~~~PVINIPGCPp~P~~i~~tL~~l 205 (371)
T PRK10468 126 NGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 (371)
T ss_pred CcceeeECCchHHHHHHHHhccCCEEEEEecccccCCcccCCCCCCCCccHHHhcCCCCeEEcCCCCCCHHHHHHHHHHH
Confidence 6789999999999999999999999999998877774 4888888553 99999999999999999988
Q ss_pred HHH
Q psy5227 157 MKI 159 (693)
Q Consensus 157 l~~ 159 (693)
+.+
T Consensus 206 ~~~ 208 (371)
T PRK10468 206 ITY 208 (371)
T ss_pred Hhc
Confidence 855
No 45
>TIGR00391 hydA hydrogenase (NiFe) small subunit (hydA). Called (hupA/hydA/hupS/hoxK/vhtG) Involved in hydrogenase reactions performing different specific functions in different species eg (EC 1.12.2.1) in Desulfovibrio gigas,(EC 1.12.99.3) in Wolinella succinogenes and (EC 1.18.99.1) in E.coli and a number of other species and (EC 1.12.99.-) in the archea.
Probab=99.88 E-value=1e-22 Score=215.39 Aligned_cols=128 Identities=14% Similarity=0.349 Sum_probs=109.5
Q ss_pred ccccccccccCCCCCchHHHHHhhcCCccc--cccc-cceeccCC-------------------CCccEEEEccccCCCc
Q psy5227 32 WTRTSSMWPMTFGLACCAIEMMHAGASRYD--LDRF-GIMFRPSP-------------------RQSDVMIVAGTLCNKM 89 (693)
Q Consensus 32 ~~r~~~lw~~~~~c~gc~~e~l~~~~~~~d--~~~~-~~~~~~~p-------------------~~~Dil~veG~v~~~~ 89 (693)
-.+...+|++..+|+||++||+++..|.++ +.++ .+.|+|+- ...|||+|||+|++++
T Consensus 48 ~~~~~viWL~~~~CtGCs~SlL~s~~P~~~~~ll~~isl~yhptlmaa~G~~ae~~l~~~~~~~~g~~ILvVEGaIp~~~ 127 (365)
T TIGR00391 48 PQRPPVIWIHAQECTGCTESLLRSAHPTVENLILETISLEYHETLMAAFGHQAEENKHDAIEKYKGQYILVVEGSIPLGD 127 (365)
T ss_pred CCCCCEEEEeCCCCCCcHHHHhccCCCCHHHHHhcCceEEechHhHHhhHHHHHHHHHHHHhccCCCeEEEEeCCCCCCC
Confidence 467789999999999999999999999887 5444 66777762 1269999999999876
Q ss_pred ---------HHHHHHHHHHcCCCceEEeecccCCCCCcCCcCCcc--ccCcceeee--cceeccCCCCChhhhHHHHHHH
Q psy5227 90 ---------APALRKVYDQMTEPKWVISMGSCANGGGYYHYSYSV--VRGCDRIVP--VDVYIPGCPPTAEALLYDYYST 156 (693)
Q Consensus 90 ---------~~~~~~~~~~~~~~~~vva~G~CA~~GGi~~~~~~~--~~~~~~~v~--vd~~ipGCPp~p~~i~~~l~~l 156 (693)
.+.++.+++++++||+|||+||||++|||++..+++ ..+|+++++ .+++||||||+|++|+++|.++
T Consensus 128 ~G~y~~~~g~~~~e~l~~~a~~A~aVIAvGtCAs~GGI~aa~pnptga~~v~~vi~~~pvinIPGCPp~Pe~i~~tl~~~ 207 (365)
T TIGR00391 128 NGIYCMVAGEPIVEHIRKAAEGAAAIIAIGTCSSWGGVQAAGPNPTGAVPLQKVIPDKPVINVPGCPPNPHNFLATVAYI 207 (365)
T ss_pred CceeeeeCCcHHHHHHHHHhhcCCEEEEEeccccccCccCCCCCCCCCcchhHhcCCCCeEEeCCCCCCHHHHHHHHHHH
Confidence 678999999999999999999999999999877666 458899883 3599999999999999999887
Q ss_pred HHH
Q psy5227 157 MKI 159 (693)
Q Consensus 157 l~~ 159 (693)
+.+
T Consensus 208 ll~ 210 (365)
T TIGR00391 208 ITF 210 (365)
T ss_pred HHc
Confidence 643
No 46
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=99.86 E-value=2.9e-22 Score=197.17 Aligned_cols=114 Identities=29% Similarity=0.549 Sum_probs=94.2
Q ss_pred ccCCCCCchHHHHHhhcCCcccc-ccccceeccC-------CCCccEEEEccccCCCcHHHHHHHHHHcCCCceEEeecc
Q psy5227 40 PMTFGLACCAIEMMHAGASRYDL-DRFGIMFRPS-------PRQSDVMIVAGTLCNKMAPALRKVYDQMTEPKWVISMGS 111 (693)
Q Consensus 40 ~~~~~c~gc~~e~l~~~~~~~d~-~~~~~~~~~~-------p~~~Dil~veG~v~~~~~~~~~~~~~~~~~~~~vva~G~ 111 (693)
.+..||+||.+||+++....+|+ +.+++.|.|. |. .||++|||+|.+ .+.++.+.++++++|+|||+|+
T Consensus 9 ~~L~gC~GC~~slldl~E~L~dll~~~div~~~~l~D~keiPE-vDValVEGsV~~--ee~lE~v~ElRekakivVA~Gs 85 (247)
T COG1941 9 VWLTGCSGCHMSLLDLYEKLLDLLEDADIVYCPTLVDEKEIPE-VDVALVEGSVCD--EEELELVKELREKAKIVVALGS 85 (247)
T ss_pred EEeccccchHHHHHhHHHHHHHhhhhhcEEEeecccccccCCc-ccEEEEecccCc--HHHHHHHHHHHHhCcEEEEEec
Confidence 34568999999999998888884 4456666554 44 999999999995 4566669999999999999999
Q ss_pred cCCCCCcCCc-----------CC---------ccccCcceeeecceeccCCCCChhhhHHHHHHH
Q psy5227 112 CANGGGYYHY-----------SY---------SVVRGCDRIVPVDVYIPGCPPTAEALLYDYYST 156 (693)
Q Consensus 112 CA~~GGi~~~-----------~~---------~~~~~~~~~v~vd~~ipGCPp~p~~i~~~l~~l 156 (693)
||++||+..- .| ..+.|+.++|+||++||||||+|+.|.+++..+
T Consensus 86 CA~~Ggv~~~~~~s~~e~l~~~y~~~~~~~~~~~v~Pl~evI~VD~~IpGCPP~~e~I~~al~al 150 (247)
T COG1941 86 CAVTGGVQGLRNKSGEELLRPVYGDAKSTFNEESVVPLGEVIDVDYAIPGCPPSPEEIARALTAL 150 (247)
T ss_pred chhcCCchhhhhccccccchhhhhcccCCCCccceEEchheeeeeeecCCCCcCHHHHHHHHHHH
Confidence 9999999531 12 336799999999999999999999999988776
No 47
>COG1740 HyaA Ni,Fe-hydrogenase I small subunit [Energy production and conversion]
Probab=99.82 E-value=1.4e-20 Score=192.66 Aligned_cols=129 Identities=16% Similarity=0.329 Sum_probs=107.6
Q ss_pred cccccccccccCCCCCchHHHHHhhcCCccc--cccc-cceeccCC-------------------CCccEEEEccccCCC
Q psy5227 31 NWTRTSSMWPMTFGLACCAIEMMHAGASRYD--LDRF-GIMFRPSP-------------------RQSDVMIVAGTLCNK 88 (693)
Q Consensus 31 r~~r~~~lw~~~~~c~gc~~e~l~~~~~~~d--~~~~-~~~~~~~p-------------------~~~Dil~veG~v~~~ 88 (693)
+-.+...||++...|.||++||+++..|..+ +.+| .+.|+++- ..-+||+|||+|+..
T Consensus 45 ~~~~~~viWLhg~eCTGcteSfLrs~~P~~~~li~~~IsL~Yhetlmaa~G~~aee~l~~~i~~~kg~yILvVEG~v~~~ 124 (355)
T COG1740 45 NKPRTPVIWLHGLECTGCTESFLRSEHPTANDLILELISLEYHETLMAASGTQAEELLEDAILKYKGKYILVVEGAVPLG 124 (355)
T ss_pred cCCCCceEEEecccccCchHHHhccCCCCHHHHHHHHHhhhhhhhhhhhcchhHHHHHHHHHHhcCCceEEEEeCCccCC
Confidence 3345589999999999999999999998876 4444 44666651 136799999999998
Q ss_pred c---------HHHHHHHHHHcCCCceEEeecccCCCCCcCCcCC--ccccCcceeee--cceeccCCCCChhhhHHHHHH
Q psy5227 89 M---------APALRKVYDQMTEPKWVISMGSCANGGGYYHYSY--SVVRGCDRIVP--VDVYIPGCPPTAEALLYDYYS 155 (693)
Q Consensus 89 ~---------~~~~~~~~~~~~~~~~vva~G~CA~~GGi~~~~~--~~~~~~~~~v~--vd~~ipGCPp~p~~i~~~l~~ 155 (693)
. ++.++.+.++...|++|||||+||++|||.+..+ +...+++++++ ..||||||||+|+||+.+|.+
T Consensus 125 ~~G~y~~vgg~~~~e~l~~aA~~A~aIiAvGtCAs~GgI~AA~pnps~a~~i~ev~~~kpVINiPGCPp~pd~iv~tl~~ 204 (355)
T COG1740 125 ENGMYCIVGGEPFKEILRKAAEGASAIIAVGTCASWGGIQAAKPNPTGAGPLSEVIKDKPVINIPGCPPNPDWIVATLLH 204 (355)
T ss_pred CCceEEEEcChhHHHHHHHHhhcCceEEEEecccccCCeeccCCCCCCcccceecccCCceeeCCCCCCCchhHHHHHHH
Confidence 4 7888889999999999999999999999997654 45678899883 349999999999999999998
Q ss_pred HHHH
Q psy5227 156 TMKI 159 (693)
Q Consensus 156 ll~~ 159 (693)
++.+
T Consensus 205 ~~~~ 208 (355)
T COG1740 205 IVTF 208 (355)
T ss_pred HHHc
Confidence 8876
No 48
>COG3262 HycE Ni,Fe-hydrogenase III component G [Energy production and conversion]
Probab=99.76 E-value=1.2e-18 Score=160.42 Aligned_cols=108 Identities=29% Similarity=0.378 Sum_probs=83.9
Q ss_pred HHHHHHHHhhhcccccccccccccccccccccccCCCCCCCCCcEEEEEEeeccccC--eEEEEEEeecCCCCCCcCccc
Q psy5227 153 YYSTMKILRDHVNFRFEQLIDLCGIDYSIYNKNINSDNSNKNLRFAIVLHLLSLNYN--WRLRVRVFAENNELPRLHSIT 230 (693)
Q Consensus 153 l~~ll~~Lr~~~~~~fd~L~~~~~vd~~~~~~~~~~~~~~~~~~~~~vyh~~~~~~~--~~l~v~v~~~~~~~~~~~s~~ 230 (693)
+...+++|....+ ..+..+.|.|.. ..++.|. +|.|++++.. ..+.|++.++. ++|++||++
T Consensus 41 l~~~~e~l~~~~d---~~~~~liG~~e~-----------~~~~~~~-v~~fLs~~~a~~~~v~vk~~vp~-dnpe~pSva 104 (165)
T COG3262 41 LPDVVEFLYYELD---GWLSVLIGNDED-----------ALNGHFA-VYLFLSMEQAPKCWVIVKVSVPA-DNPEFPSVA 104 (165)
T ss_pred hHHHHHHHHHhhc---ccceeeeccccc-----------cccCcee-EEEEEEEccCCCeEEEEEEecCC-CCCcCCccc
Confidence 4445566653222 345556666543 1345555 6777777754 47899999887 889999999
Q ss_pred ccccccchhhhhhccccCceecCCCCCccccccCCCC--CCCCCCCCc
Q psy5227 231 SLWSSANWYEREAFDLFGIFFDGHDDLRRLLTDYGFV--GHPFRKDFP 276 (693)
Q Consensus 231 ~~~~~a~~~Ere~~d~~Gi~~~g~pd~r~~~~~~~~~--~~plrk~~~ 276 (693)
+++|+|.|+|||+.||||+.|.||||.|||++|++|+ .||||||..
T Consensus 105 ~i~P~A~wfEREi~Dm~Gl~~vg~PD~RRLvLpddwPeg~yPLRkd~~ 152 (165)
T COG3262 105 PIFPAALWFEREIRDMYGLDPVGAPDPRRLVLPDDWPEGIYPLRKDAM 152 (165)
T ss_pred cccchhHHHHHHHHHhhCcccCCCCCcceeeccccCCcccccchhhcc
Confidence 9999999999999999999999999999999999995 599999864
No 49
>KOG4662|consensus
Probab=98.55 E-value=9e-09 Score=91.02 Aligned_cols=40 Identities=33% Similarity=0.647 Sum_probs=35.7
Q ss_pred ccCCCCCCCCCCCCcccCCCCcccccccccccccccccCC
Q psy5227 4 ILGPYKPNPQKNSPYECGFKEFGDKLINWTRTSSMWPMTF 43 (693)
Q Consensus 4 ~l~~~~~~~~K~~pyECGf~p~~~~rir~~r~~~lw~~~~ 43 (693)
++++++..+||.+||||||||++++|++|++++++..+.|
T Consensus 30 ~~s~~~~~~EKsspYECGFdP~~~arlpFsirfflvaI~F 69 (122)
T KOG4662|consen 30 LLSTSSVGKEKSSPYECGFDPLGDARLPFSIRFFLVAITF 69 (122)
T ss_pred hhhhcccChhcCCccccCCCcCccccCchhhHHHHHHHHH
Confidence 4466677899999999999999999999999999988776
No 50
>MTH00092 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=98.38 E-value=5.7e-08 Score=87.86 Aligned_cols=42 Identities=24% Similarity=0.297 Sum_probs=37.3
Q ss_pred CcccCCCCCCCCCCCCcccCCCCcccccccccccccccccCC
Q psy5227 2 GRILGPYKPNPQKNSPYECGFKEFGDKLINWTRTSSMWPMTF 43 (693)
Q Consensus 2 ~~~l~~~~~~~~K~~pyECGf~p~~~~rir~~r~~~lw~~~~ 43 (693)
++++++|+++++|.+||||||+|.+++|.+++.++++.++.|
T Consensus 22 ~~~l~~~~~~~~K~s~yECGf~p~~~~r~~Fsi~FfliailF 63 (111)
T MTH00092 22 NFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMF 63 (111)
T ss_pred HHHhCcCCCCcccCCccCCCCCCCCCccCccceehHHHHHHH
Confidence 456788888899999999999999999999999999887654
No 51
>CHL00022 ndhC NADH dehydrogenase subunit 3
Probab=98.29 E-value=1.2e-07 Score=86.91 Aligned_cols=42 Identities=29% Similarity=0.601 Sum_probs=37.3
Q ss_pred CcccCCCCCCCCCCCCcccCCCCcccccccccccccccccCC
Q psy5227 2 GRILGPYKPNPQKNSPYECGFKEFGDKLINWTRTSSMWPMTF 43 (693)
Q Consensus 2 ~~~l~~~~~~~~K~~pyECGf~p~~~~rir~~r~~~lw~~~~ 43 (693)
++++++|+++++|.+||||||+|.+++|.+++.++++.++.|
T Consensus 28 ~~~l~~~~~~~~k~s~yECGf~p~~~~~~~fsv~FfliallF 69 (120)
T CHL00022 28 SGLLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVF 69 (120)
T ss_pred HHHhCCCCCCcccCCCcCCCCCCCCCCCCccceeHHHHHHHH
Confidence 456788888899999999999999999999999999877654
No 52
>MTH00136 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=98.25 E-value=1.8e-07 Score=85.39 Aligned_cols=42 Identities=29% Similarity=0.545 Sum_probs=36.8
Q ss_pred CcccCCCCCCCCCCCCcccCCCCcccccccccccccccccCC
Q psy5227 2 GRILGPYKPNPQKNSPYECGFKEFGDKLINWTRTSSMWPMTF 43 (693)
Q Consensus 2 ~~~l~~~~~~~~K~~pyECGf~p~~~~rir~~r~~~lw~~~~ 43 (693)
++++++++++++|.+||||||+|.+++|.+++.++++.++.|
T Consensus 22 ~~~l~~~~~~~~K~s~yECGf~p~~~~~~~fsi~FfliallF 63 (116)
T MTH00136 22 SFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILF 63 (116)
T ss_pred HHHHcCCCCCcCCCccccCCCCCCCCccccCceehHHHHHHH
Confidence 345788888999999999999999999999999999876554
No 53
>PRK06602 NADH:ubiquinone oxidoreductase subunit A; Validated
Probab=98.23 E-value=1.9e-07 Score=85.82 Aligned_cols=42 Identities=40% Similarity=0.842 Sum_probs=37.1
Q ss_pred CcccCCCCCCCCCCCCcccCCCCcccccccccccccccccCC
Q psy5227 2 GRILGPYKPNPQKNSPYECGFKEFGDKLINWTRTSSMWPMTF 43 (693)
Q Consensus 2 ~~~l~~~~~~~~K~~pyECGf~p~~~~rir~~r~~~lw~~~~ 43 (693)
++++++|+++++|.+||||||+|.+++|.+++.++++.++.|
T Consensus 29 ~~~l~~~~~~~~K~s~yECGf~p~~~~~~~fsi~ffliallF 70 (121)
T PRK06602 29 GKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILF 70 (121)
T ss_pred HHHHcCCCCCCCCCcccCCCcCCCcccccCCCchHHHHHHHH
Confidence 456788888999999999999999999999999999887654
No 54
>MTH00042 ND3 NADH dehydrogenase subunit 3; Validated
Probab=98.22 E-value=2.1e-07 Score=84.88 Aligned_cols=42 Identities=29% Similarity=0.603 Sum_probs=37.2
Q ss_pred CcccCCCCCCCCCCCCcccCCCCcccccccccccccccccCC
Q psy5227 2 GRILGPYKPNPQKNSPYECGFKEFGDKLINWTRTSSMWPMTF 43 (693)
Q Consensus 2 ~~~l~~~~~~~~K~~pyECGf~p~~~~rir~~r~~~lw~~~~ 43 (693)
++++++++++++|.+||||||+|.+++|.+++.++++.++.|
T Consensus 22 ~~~l~~~~~~~~k~s~yECGf~~~~~~~~~fsi~ffliallF 63 (116)
T MTH00042 22 GHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILF 63 (116)
T ss_pred HHHHcccCCCcccCccccCCCCCCCccccCCCcchHHHHHHH
Confidence 456788888999999999999999999999999999887654
No 55
>MTH00106 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=98.22 E-value=2.2e-07 Score=84.65 Aligned_cols=42 Identities=29% Similarity=0.510 Sum_probs=36.6
Q ss_pred CcccCCCCCCCCCCCCcccCCCCcccccccccccccccccCC
Q psy5227 2 GRILGPYKPNPQKNSPYECGFKEFGDKLINWTRTSSMWPMTF 43 (693)
Q Consensus 2 ~~~l~~~~~~~~K~~pyECGf~p~~~~rir~~r~~~lw~~~~ 43 (693)
++++++++++++|.+||||||+|.+++|.+++.++++.++.|
T Consensus 21 ~~~l~~~~~~~~k~s~yECGf~~~~~~~~~fs~~FfliallF 62 (115)
T MTH00106 21 AFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITF 62 (115)
T ss_pred HHHHcCCCCCcCCCCccCCCCCCCCcccccCCchHHHHHHHH
Confidence 345678888899999999999999999999999999876554
No 56
>MTH00069 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=98.21 E-value=2.1e-07 Score=84.61 Aligned_cols=42 Identities=29% Similarity=0.535 Sum_probs=36.6
Q ss_pred CcccCCCCCCCCCCCCcccCCCCcccccccccccccccccCC
Q psy5227 2 GRILGPYKPNPQKNSPYECGFKEFGDKLINWTRTSSMWPMTF 43 (693)
Q Consensus 2 ~~~l~~~~~~~~K~~pyECGf~p~~~~rir~~r~~~lw~~~~ 43 (693)
++++++++++++|.+||||||+|.+++|.+++.++++.++.|
T Consensus 20 ~~~l~~~~~~~~K~s~yECGf~p~~~~~~~fs~~FfliallF 61 (114)
T MTH00069 20 SFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILF 61 (114)
T ss_pred HHHHcCCCCCcCcCCcCCCCcCCCCCccCccchHHHHHHHHH
Confidence 355677888999999999999999999999999999876554
No 57
>MTH00018 ND3 NADH dehydrogenase subunit 3; Validated
Probab=98.20 E-value=2.2e-07 Score=84.42 Aligned_cols=42 Identities=31% Similarity=0.506 Sum_probs=36.8
Q ss_pred CcccCCCCCCCCCCCCcccCCCCcccccccccccccccccCC
Q psy5227 2 GRILGPYKPNPQKNSPYECGFKEFGDKLINWTRTSSMWPMTF 43 (693)
Q Consensus 2 ~~~l~~~~~~~~K~~pyECGf~p~~~~rir~~r~~~lw~~~~ 43 (693)
++++++++++++|.+||||||+|.+++|.+++.++++.++.|
T Consensus 21 ~~~l~~~~~~~~k~s~yECGf~~~~~~~~~fsi~ffliailF 62 (113)
T MTH00018 21 SYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILF 62 (113)
T ss_pred HHHHcCcCCCcccCcccccCcCCCcccccCCCchHHHHHHHH
Confidence 456788888899999999999999999999999999876554
No 58
>COG0838 NuoA NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]
Probab=98.20 E-value=2.4e-07 Score=84.39 Aligned_cols=42 Identities=38% Similarity=0.819 Sum_probs=39.4
Q ss_pred CcccCCCCCCCCCCCCcccCCCCcccccccccccccccccCC
Q psy5227 2 GRILGPYKPNPQKNSPYECGFKEFGDKLINWTRTSSMWPMTF 43 (693)
Q Consensus 2 ~~~l~~~~~~~~K~~pyECGf~p~~~~rir~~r~~~lw~~~~ 43 (693)
+++|++++++++|++|||||++|.++++.+++.++++.++.|
T Consensus 29 ~~lL~p~~~~~~K~~~YE~G~~p~g~a~~~f~~qyyl~ailF 70 (123)
T COG0838 29 SKLLGPRRPNPEKLSPYECGNPPFGGARLRFSVQYYLVAILF 70 (123)
T ss_pred HHHhCCCCCCccccCccccCCCCCCccccccccHHHHHHHHH
Confidence 568899999999999999999999999999999999998776
No 59
>PRK07928 NADH dehydrogenase subunit A; Validated
Probab=98.19 E-value=2.8e-07 Score=84.33 Aligned_cols=42 Identities=24% Similarity=0.372 Sum_probs=36.2
Q ss_pred CcccCCCCCCCCCCCCcccCCCCcccc--cccccccccccccCC
Q psy5227 2 GRILGPYKPNPQKNSPYECGFKEFGDK--LINWTRTSSMWPMTF 43 (693)
Q Consensus 2 ~~~l~~~~~~~~K~~pyECGf~p~~~~--rir~~r~~~lw~~~~ 43 (693)
++++++|+++++|.+||||||+|.+++ +.+++.++++.++.|
T Consensus 25 ~~~l~~~~~~~~K~s~yECGf~p~~~~~~~~~Fsi~ffliallF 68 (119)
T PRK07928 25 ASLVGPKRYNRAKLEAYECGIEPTPQPAGGGRFPVKYYLTAMLF 68 (119)
T ss_pred HHHhCCCCCCcccCCccCCCCCCCCCccccceeeeehHHHHHHH
Confidence 456788888899999999999999996 789999999887654
No 60
>MTH00113 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=98.18 E-value=2.5e-07 Score=84.21 Aligned_cols=42 Identities=31% Similarity=0.560 Sum_probs=36.5
Q ss_pred CcccCCCCCCCCCCCCcccCCCCcccccccccccccccccCC
Q psy5227 2 GRILGPYKPNPQKNSPYECGFKEFGDKLINWTRTSSMWPMTF 43 (693)
Q Consensus 2 ~~~l~~~~~~~~K~~pyECGf~p~~~~rir~~r~~~lw~~~~ 43 (693)
++++++++++++|.+||||||+|.+++|.+++.++++.++.|
T Consensus 21 ~~~l~~~~~~~~k~s~yECGf~~~~~~~~~fsi~FfliailF 62 (114)
T MTH00113 21 NFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILF 62 (114)
T ss_pred HHHHcCCCCCcccCCeecCCcCCCccccccCCchHHHHHHHH
Confidence 345778888999999999999999999999999998876554
No 61
>MTH00202 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=98.18 E-value=2.7e-07 Score=84.26 Aligned_cols=42 Identities=21% Similarity=0.415 Sum_probs=36.0
Q ss_pred CcccCCCC-CCCCCCCCcccCCCCcccccccccccccccccCC
Q psy5227 2 GRILGPYK-PNPQKNSPYECGFKEFGDKLINWTRTSSMWPMTF 43 (693)
Q Consensus 2 ~~~l~~~~-~~~~K~~pyECGf~p~~~~rir~~r~~~lw~~~~ 43 (693)
++++++|+ ++++|.+||||||+|.+++|.+++.++++.++.|
T Consensus 22 ~~~l~~~~~~~~~k~s~yECGf~p~~~~~~~Fsi~FfliallF 64 (117)
T MTH00202 22 SWMLSFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIF 64 (117)
T ss_pred HHHHCCCCCCCcccCcccCCCcCCCccccCCCChhHHHHHHHH
Confidence 34577764 7899999999999999999999999999887654
No 62
>PRK06073 NADH dehydrogenase subunit A; Validated
Probab=98.18 E-value=3e-07 Score=84.40 Aligned_cols=42 Identities=26% Similarity=0.320 Sum_probs=38.9
Q ss_pred CcccCCCCCCCCCCCCcccCCCCcccccccccccccccccCC
Q psy5227 2 GRILGPYKPNPQKNSPYECGFKEFGDKLINWTRTSSMWPMTF 43 (693)
Q Consensus 2 ~~~l~~~~~~~~K~~pyECGf~p~~~~rir~~r~~~lw~~~~ 43 (693)
++++++++++++|.+|||||++|+++.+.+++.++++.++.|
T Consensus 28 ~~ll~p~~~~~~K~~~YEcG~~p~g~~r~~f~i~yyl~allF 69 (124)
T PRK06073 28 LKLILPSKPTPLKVSRYEAGNPPTGPAKLWLPMQYYGYLLLF 69 (124)
T ss_pred HHHhcCCCCCcccCCcccCCCCCCCCCCccccchHHHHHHHH
Confidence 467899999999999999999999999999999999988776
No 63
>PRK07756 NADH dehydrogenase subunit A; Validated
Probab=98.15 E-value=3.4e-07 Score=84.30 Aligned_cols=42 Identities=33% Similarity=0.666 Sum_probs=37.2
Q ss_pred CcccCCCCCCCCCCCCcccCCCCcccccccccccccccccCC
Q psy5227 2 GRILGPYKPNPQKNSPYECGFKEFGDKLINWTRTSSMWPMTF 43 (693)
Q Consensus 2 ~~~l~~~~~~~~K~~pyECGf~p~~~~rir~~r~~~lw~~~~ 43 (693)
++++++|+++++|.+||||||+|.+++|.+++.++++.++.|
T Consensus 30 ~~~l~~~~~~~~K~~~yECGf~p~~~~~~~fsi~fyliallF 71 (122)
T PRK07756 30 GRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLF 71 (122)
T ss_pred HHHHccCCCCcccCCCcCCCCCCCCCCCCcccHHHHHHHHHH
Confidence 456788888899999999999999999999999999887654
No 64
>MTH00148 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=98.15 E-value=3.6e-07 Score=83.49 Aligned_cols=42 Identities=24% Similarity=0.499 Sum_probs=35.9
Q ss_pred CcccCCC-CCCCCCCCCcccCCCCcccccccccccccccccCC
Q psy5227 2 GRILGPY-KPNPQKNSPYECGFKEFGDKLINWTRTSSMWPMTF 43 (693)
Q Consensus 2 ~~~l~~~-~~~~~K~~pyECGf~p~~~~rir~~r~~~lw~~~~ 43 (693)
+.++++| +++++|.+||||||+|.+++|.+++.++++.++.|
T Consensus 22 ~~~l~~~~~~~~~K~s~yECGf~p~~~~~~~Fsi~FfliallF 64 (117)
T MTH00148 22 GLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILF 64 (117)
T ss_pred HHHHcCccCCCcccCccccCCcCCCCCCcCcCCcchHHHHHHH
Confidence 3456775 47899999999999999999999999999887654
No 65
>MTH00055 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=98.15 E-value=3.2e-07 Score=83.93 Aligned_cols=42 Identities=31% Similarity=0.558 Sum_probs=37.0
Q ss_pred CcccCCCCCCCCCCCCcccCCCCcccccccccccccccccCC
Q psy5227 2 GRILGPYKPNPQKNSPYECGFKEFGDKLINWTRTSSMWPMTF 43 (693)
Q Consensus 2 ~~~l~~~~~~~~K~~pyECGf~p~~~~rir~~r~~~lw~~~~ 43 (693)
++++++++++++|.+||||||+|.++.|.+++.++++.++.|
T Consensus 26 ~~~l~~~~~~~~k~s~yECGf~p~~~~~~~Fsi~FfliallF 67 (118)
T MTH00055 26 SYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILF 67 (118)
T ss_pred HHHHcCcCCCcccCCccccCcCCCccccCCCChHHHHHHHHH
Confidence 456788888899999999999999999999999999887654
No 66
>MTH00203 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=98.12 E-value=4.1e-07 Score=82.54 Aligned_cols=41 Identities=29% Similarity=0.573 Sum_probs=35.6
Q ss_pred cccCCCCCCCCCCCCcccCCCCcccccccccccccccccCC
Q psy5227 3 RILGPYKPNPQKNSPYECGFKEFGDKLINWTRTSSMWPMTF 43 (693)
Q Consensus 3 ~~l~~~~~~~~K~~pyECGf~p~~~~rir~~r~~~lw~~~~ 43 (693)
+++++++++++|.+||||||+|.++++.+++.++++.++.|
T Consensus 23 ~~l~~~~~~~~K~s~yECGf~~~~~~~~~fsi~FfliailF 63 (112)
T MTH00203 23 FWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSF 63 (112)
T ss_pred HHHcccCCCcccCcccCCCcCCCcccccCCChHHHHHHHHH
Confidence 45567778899999999999999999999999999876554
No 67
>MTH00161 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=98.07 E-value=6.1e-07 Score=81.55 Aligned_cols=42 Identities=21% Similarity=0.456 Sum_probs=35.8
Q ss_pred CcccCCCC-CCCCCCCCcccCCCCcccccccccccccccccCC
Q psy5227 2 GRILGPYK-PNPQKNSPYECGFKEFGDKLINWTRTSSMWPMTF 43 (693)
Q Consensus 2 ~~~l~~~~-~~~~K~~pyECGf~p~~~~rir~~r~~~lw~~~~ 43 (693)
+.++++++ ++++|.+||||||+|.+++|.+++.++++.+..|
T Consensus 20 ~~~l~~~~~~~~~k~spyECGf~~~~~~~~~fsi~ffliallF 62 (113)
T MTH00161 20 ASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIF 62 (113)
T ss_pred HHHHcCCCCCCcccCccccCCcCCCCCcccCCcchhHHHHHHH
Confidence 34567765 7899999999999999999999999999876554
No 68
>MTH00012 ND3 NADH dehydrogenase subunit 3; Validated
Probab=98.06 E-value=7e-07 Score=81.65 Aligned_cols=41 Identities=24% Similarity=0.512 Sum_probs=34.8
Q ss_pred cccCCC-CCCCCCCCCcccCCCCcccccccccccccccccCC
Q psy5227 3 RILGPY-KPNPQKNSPYECGFKEFGDKLINWTRTSSMWPMTF 43 (693)
Q Consensus 3 ~~l~~~-~~~~~K~~pyECGf~p~~~~rir~~r~~~lw~~~~ 43 (693)
.+++++ +++++|.+||||||+|.+++|.+++.++++.++.|
T Consensus 23 ~~l~~~~~~~~~k~spyECGf~p~~~~~~~fsi~FfliallF 64 (117)
T MTH00012 23 WVLAARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIF 64 (117)
T ss_pred HHHCCCCCCCcccCcccCCCcCCCcccCCCCChhhHHHHHHH
Confidence 456654 46799999999999999999999999999887654
No 69
>MTH00030 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=98.04 E-value=7.7e-07 Score=81.56 Aligned_cols=42 Identities=36% Similarity=0.594 Sum_probs=35.5
Q ss_pred CcccCCC-----CCCCCCCCCcccCCCCcccccccccccccccccCC
Q psy5227 2 GRILGPY-----KPNPQKNSPYECGFKEFGDKLINWTRTSSMWPMTF 43 (693)
Q Consensus 2 ~~~l~~~-----~~~~~K~~pyECGf~p~~~~rir~~r~~~lw~~~~ 43 (693)
+.+|+++ +++++|.+||||||+|.++.+.+++.++++.++.|
T Consensus 26 ~~~l~~~~~~~~~~~~~k~spyECGf~p~~~~~~~Fsi~FfliallF 72 (123)
T MTH00030 26 SFTLGNSRIGLTKPDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILF 72 (123)
T ss_pred HHHhccccccccCCCcccCccccCCCCCCCCccCccchhHHHHHHHH
Confidence 3456664 67899999999999999999999999999876554
No 70
>PRK08489 NADH dehydrogenase subunit A; Validated
Probab=97.82 E-value=4.5e-06 Score=77.27 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=32.1
Q ss_pred ccCCCCCCCCCCCCcccCCCCcccccccccccccccccCC
Q psy5227 4 ILGPYKPNPQKNSPYECGFKEFGDKLINWTRTSSMWPMTF 43 (693)
Q Consensus 4 ~l~~~~~~~~K~~pyECGf~p~~~~rir~~r~~~lw~~~~ 43 (693)
++++++++++|.+||||||+|.++. .+++.++++.++.|
T Consensus 37 ~l~~~~~~~~K~s~yECGf~p~~~~-~~Fsi~FyliallF 75 (129)
T PRK08489 37 KLAQKNTEKLKLAIYECGPEPVKQP-NRISSHFYIMALLF 75 (129)
T ss_pred hhccCCCCcccCCccccCCCCCCCC-ceeeeehHHHHHHH
Confidence 3445889999999999999998775 57999999876654
No 71
>PF00507 Oxidored_q4: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; InterPro: IPR000440 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family contains chain 3 of the NADH-ubiquinone / plastoquinone oxidoreductase.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0055114 oxidation-reduction process; PDB: 3RKO_A.
Probab=97.67 E-value=7.4e-07 Score=79.57 Aligned_cols=42 Identities=38% Similarity=0.696 Sum_probs=14.7
Q ss_pred CcccCCCCCCC-CCCCCcccCCCCcccccccccccccccccCC
Q psy5227 2 GRILGPYKPNP-QKNSPYECGFKEFGDKLINWTRTSSMWPMTF 43 (693)
Q Consensus 2 ~~~l~~~~~~~-~K~~pyECGf~p~~~~rir~~r~~~lw~~~~ 43 (693)
++++++|+++. +|.+||||||+|.++++.+++.++++.++.|
T Consensus 10 ~~~l~~~~~~~~~k~s~yECG~~p~~~~~~~fs~~ff~i~ilF 52 (102)
T PF00507_consen 10 SFLLSPKKPNNREKLSPYECGFDPFGSSRSPFSIQFFLIAILF 52 (102)
T ss_dssp HHHHHHHHH----------------------HHHHHHHHHHHH
T ss_pred HHHHcCCCCCchhhcChhhcCCCCCCcccCCchHHHHHHHHHH
Confidence 34566666554 9999999999999999999999998876654
No 72
>PRK06432 NADH dehydrogenase subunit A; Validated
Probab=97.60 E-value=1.9e-05 Score=73.39 Aligned_cols=33 Identities=15% Similarity=-0.043 Sum_probs=29.7
Q ss_pred CCCCCCCcccCCCCcccccccccccccccccCC
Q psy5227 11 NPQKNSPYECGFKEFGDKLINWTRTSSMWPMTF 43 (693)
Q Consensus 11 ~~~K~~pyECGf~p~~~~rir~~r~~~lw~~~~ 43 (693)
+++|.+||||||+|.++++.+|+.++++.++.|
T Consensus 60 ~~~k~spYECGFdp~g~~r~~FSirFfLIAILF 92 (144)
T PRK06432 60 DQSYLEPYESGEVAREIWGGPSINQYYIVVLLF 92 (144)
T ss_pred CcCCCcCccCCCCCCCCccCccceehHHHHHHH
Confidence 567999999999999999999999999887654
No 73
>MTH00060 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=97.59 E-value=1.7e-05 Score=71.89 Aligned_cols=35 Identities=23% Similarity=0.193 Sum_probs=31.1
Q ss_pred CCCCCCCCCcccCCCCcccccccccccccccccCC
Q psy5227 9 KPNPQKNSPYECGFKEFGDKLINWTRTSSMWPMTF 43 (693)
Q Consensus 9 ~~~~~K~~pyECGf~p~~~~rir~~r~~~lw~~~~ 43 (693)
+++++|.+||||||+|.++++.+++.++++.++.|
T Consensus 32 ~~~~~K~spyECGf~~~~~~~~~Fsi~FfliallF 66 (116)
T MTH00060 32 SGGFSWVSSFECGFFSSGLSENCFSFTYFFLLVFF 66 (116)
T ss_pred CCCcccCCccCCCCCCCCCccCccceehHHHHHHH
Confidence 35789999999999999999999999999887654
No 74
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=78.41 E-value=2.3 Score=37.63 Aligned_cols=67 Identities=19% Similarity=0.302 Sum_probs=40.0
Q ss_pred chHHHHHhhcCCccccccccceeccCCCCccEEEEcc-ccCCCc----HHHHHHHHHHcCCCceEEeecccCC
Q psy5227 47 CCAIEMMHAGASRYDLDRFGIMFRPSPRQSDVMIVAG-TLCNKM----APALRKVYDQMTEPKWVISMGSCAN 114 (693)
Q Consensus 47 gc~~e~l~~~~~~~d~~~~~~~~~~~p~~~Dil~veG-~v~~~~----~~~~~~~~~~~~~~~~vva~G~CA~ 114 (693)
||+++..++..-.-.+.+.|...+..|..||+++|.- +|+.+. ...+.++.+.- +|+..|.+.-|-.
T Consensus 8 GC~~N~~Dse~i~~~l~~~G~~~~~~~e~AD~iiiNTC~V~~~Ae~k~~~~i~~l~~~~-~~~~~ivv~GC~a 79 (98)
T PF00919_consen 8 GCQMNQYDSERIASILQAAGYEIVDDPEEADVIIINTCTVRESAEQKSRNRIRKLKKLK-KPGAKIVVTGCMA 79 (98)
T ss_pred CCcccHHHHHHHHHHHHhcCCeeecccccCCEEEEEcCCCCcHHHHHHHHHHHHHHHhc-CCCCEEEEEeCcc
Confidence 4555555554444457778888889999999877754 444433 23344444433 3566666665644
No 75
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=61.62 E-value=4.4 Score=45.57 Aligned_cols=74 Identities=11% Similarity=0.117 Sum_probs=43.1
Q ss_pred ccccCCCCCchHHHHHhhcCCccccccccceeccCCCCccEEEEcc-ccCCCcHH-HHHHHHHHcCCCceEEeecccCCC
Q psy5227 38 MWPMTFGLACCAIEMMHAGASRYDLDRFGIMFRPSPRQSDVMIVAG-TLCNKMAP-ALRKVYDQMTEPKWVISMGSCANG 115 (693)
Q Consensus 38 lw~~~~~c~gc~~e~l~~~~~~~d~~~~~~~~~~~p~~~Dil~veG-~v~~~~~~-~~~~~~~~~~~~~~vva~G~CA~~ 115 (693)
+++.++||.=++.+ +..-.-.|.+.|...+..+..||+++|.- +|+.+... ..+.+.+.... +..|.+|-|...
T Consensus 2 ~~i~t~GC~~N~~d---s~~~~~~l~~~g~~~~~~~~~aD~viinTC~v~~~a~~~~~~~i~~~~~~-~~~vvvgGc~a~ 77 (430)
T TIGR01125 2 IGFISLGCPKNLVD---SEVMLGILREAGYEVTPNYEDADYVIVNTCGFIEDARQESIDTIGELADA-GKKVIVTGCLVQ 77 (430)
T ss_pred EEEEECCCCCcHHH---HHHHHHHHHHCcCEECCCcccCCEEEEeCCCccchHHHHHHHHHHHHHhc-CCCEEEECCccc
Confidence 45556666443333 32223345666777777788999999997 66665543 44444444322 334777777544
No 76
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=59.05 E-value=13 Score=35.43 Aligned_cols=25 Identities=20% Similarity=0.301 Sum_probs=17.4
Q ss_pred eeccCCCCChhhhHHHHHHHHHHHh
Q psy5227 137 VYIPGCPPTAEALLYDYYSTMKILR 161 (693)
Q Consensus 137 ~~ipGCPp~p~~i~~~l~~ll~~Lr 161 (693)
+.+||||......+..+..+++.+.
T Consensus 125 ~~LPG~P~aa~~~~~~v~P~l~~~~ 149 (152)
T cd00886 125 FNLPGSPKAVREALEVILPELPHLL 149 (152)
T ss_pred EECCCCHHHHHHHHHHHHHHHHHHH
Confidence 8899999977666665555555443
No 77
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=49.41 E-value=9.3 Score=42.95 Aligned_cols=73 Identities=14% Similarity=0.165 Sum_probs=41.2
Q ss_pred cccCCCCCchHHHHHhhcCCccccccccceeccCCCCccEEEEc--cccCCCcHHHHHHHHHHc---CCCceEEeecccC
Q psy5227 39 WPMTFGLACCAIEMMHAGASRYDLDRFGIMFRPSPRQSDVMIVA--GTLCNKMAPALRKVYDQM---TEPKWVISMGSCA 113 (693)
Q Consensus 39 w~~~~~c~gc~~e~l~~~~~~~d~~~~~~~~~~~p~~~Dil~ve--G~v~~~~~~~~~~~~~~~---~~~~~vva~G~CA 113 (693)
...++||.=++.+-- .-.-.+.+.|+..++.+..||+++|+ +.......+..+.+.+.. ++++ .|.+|-|-
T Consensus 3 ~~~t~GC~~N~~ds~---~~~~~l~~~g~~~~~~~~~aD~v~intC~v~~~a~~~~~~~i~~~~~~~~~~~-~vvvgGc~ 78 (429)
T TIGR00089 3 YIETYGCQMNEADSE---IMAGLLKEAGYEVTDDPEEADVIIINTCAVREKAEQKVRSRLGELAKLKKKNA-KIVVAGCL 78 (429)
T ss_pred EEEEcCCCCcHHHHH---HHHHHHHHCcCEECCCcccCCEEEEecceeechHHHHHHHHHHHHHHhCcCCC-EEEEECcc
Confidence 455666654444332 22224566677788888999999997 444444445554444443 3221 45666664
Q ss_pred CC
Q psy5227 114 NG 115 (693)
Q Consensus 114 ~~ 115 (693)
+.
T Consensus 79 a~ 80 (429)
T TIGR00089 79 AQ 80 (429)
T ss_pred cc
Confidence 43
No 78
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=46.75 E-value=13 Score=41.84 Aligned_cols=75 Identities=17% Similarity=0.270 Sum_probs=41.2
Q ss_pred ccccCCCCCchHHHHHhhcCCccccccccceeccCCCCccEEEEcc-ccCCCc-HHHHHHHHHH---cCCCceEEeeccc
Q psy5227 38 MWPMTFGLACCAIEMMHAGASRYDLDRFGIMFRPSPRQSDVMIVAG-TLCNKM-APALRKVYDQ---MTEPKWVISMGSC 112 (693)
Q Consensus 38 lw~~~~~c~gc~~e~l~~~~~~~d~~~~~~~~~~~p~~~Dil~veG-~v~~~~-~~~~~~~~~~---~~~~~~vva~G~C 112 (693)
++..++||. ++..++..-.-.|...|+..++.+.+||+++|.- +++.+. .+..+.+.+. ..+....|.+|-|
T Consensus 3 ~~i~t~GC~---~N~~ds~~~~~~l~~~g~~~~~~~~~aDlvvinTC~v~~~a~~~~~~~i~~~~~~~r~~~~~vvv~Gc 79 (434)
T PRK14330 3 FYIKTFGCQ---MNENDSETMAGLLKKEGFEPASNPEEADVVIINTCAVRRKSEEKAYSELGQLLKLKRKKNLIIGVAGC 79 (434)
T ss_pred EEEEEcCCC---CcHHHHHHHHHHHHHCcCEECCCcccCCEEEEEccceeehHHHHHHHHHHHHHHhcccCCCEEEEECc
Confidence 445566654 4433333223345666777777788999999952 233222 3333333333 2334667888888
Q ss_pred CCC
Q psy5227 113 ANG 115 (693)
Q Consensus 113 A~~ 115 (693)
...
T Consensus 80 ~a~ 82 (434)
T PRK14330 80 VAE 82 (434)
T ss_pred ccc
Confidence 655
No 79
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=43.23 E-value=17 Score=40.97 Aligned_cols=74 Identities=16% Similarity=0.240 Sum_probs=42.7
Q ss_pred ccccCCCCCchHHHHHhhcCCccccccccceeccCCCCccEEEEc-cccCCCcH----HHHHHHHHHcCCCceEEeeccc
Q psy5227 38 MWPMTFGLACCAIEMMHAGASRYDLDRFGIMFRPSPRQSDVMIVA-GTLCNKMA----PALRKVYDQMTEPKWVISMGSC 112 (693)
Q Consensus 38 lw~~~~~c~gc~~e~l~~~~~~~d~~~~~~~~~~~p~~~Dil~ve-G~v~~~~~----~~~~~~~~~~~~~~~vva~G~C 112 (693)
++..++||. ++..++..-.-.|.+.|...+..+.+||++||- =+|+.+.. ..+.++.+..++.+.+|.+..|
T Consensus 3 ~~i~t~GC~---~N~~ds~~~~~~l~~~G~~~~~~~~~ADi~iiNTC~v~~~a~~~~~~~i~~~~~~~~~~~~~v~v~GC 79 (440)
T PRK14334 3 AHIITYGCQ---MNEYDTHLVESELVSLGAEIVDSVDEADFVLVNTCAVRGKPVEKVRSLLGELRKEKAQRPLVVGMMGC 79 (440)
T ss_pred EEEEecCCC---CcHHHHHHHHHHHHHCcCEECCCcccCCEEEEeccceeehHHHHHHHHHHHHHhhCcCCCcEEEEEcc
Confidence 455667664 333333222334677788888889999987764 44554332 3344444444444566777667
Q ss_pred CC
Q psy5227 113 AN 114 (693)
Q Consensus 113 A~ 114 (693)
-.
T Consensus 80 ~a 81 (440)
T PRK14334 80 LA 81 (440)
T ss_pred hh
Confidence 44
No 80
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=42.60 E-value=17 Score=41.15 Aligned_cols=78 Identities=14% Similarity=0.208 Sum_probs=42.5
Q ss_pred cccccccCCCCCchHHHHHhhcCCccccccccceeccCCCCccEEEEcc-ccCCCcHH-H---HHHHHHHc-CCCceEEe
Q psy5227 35 TSSMWPMTFGLACCAIEMMHAGASRYDLDRFGIMFRPSPRQSDVMIVAG-TLCNKMAP-A---LRKVYDQM-TEPKWVIS 108 (693)
Q Consensus 35 ~~~lw~~~~~c~gc~~e~l~~~~~~~d~~~~~~~~~~~p~~~Dil~veG-~v~~~~~~-~---~~~~~~~~-~~~~~vva 108 (693)
...+++.++||.=+.. ++..-.-.+...|...+..+..||+++|.= +|+.+... . +..+.++. .+|+..|.
T Consensus 10 ~~~~~i~t~GC~~N~~---dse~~~~~l~~~G~~~~~~~~~ADvviiNTC~v~~~a~~~~~~~i~~~~~~k~~~p~~~iv 86 (449)
T PRK14332 10 LGKVYIETYGCQMNEY---DSGIVSSLMRDAEYSTSNDPENSDIIFLNTCAIRENAHAKIYNRLQSLGYLKKRNPNLVIG 86 (449)
T ss_pred CCEEEEEecCCCCCHH---HHHHHHHHHHHCcCEECCCcccCCEEEEEccCeechHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 3447777887743333 222212246667777778889999888864 33333221 1 11222211 34667777
Q ss_pred ecccCCC
Q psy5227 109 MGSCANG 115 (693)
Q Consensus 109 ~G~CA~~ 115 (693)
+|-|-..
T Consensus 87 v~GC~a~ 93 (449)
T PRK14332 87 VLGCMAQ 93 (449)
T ss_pred EECcccc
Confidence 8777543
No 81
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=41.09 E-value=22 Score=41.02 Aligned_cols=77 Identities=14% Similarity=0.188 Sum_probs=43.9
Q ss_pred ccccccCCCCCchHHHHHhhcCCccccccccceeccCCCCccEEEE-ccccCCCcHHH----HHHHHHHc-CCCceEEee
Q psy5227 36 SSMWPMTFGLACCAIEMMHAGASRYDLDRFGIMFRPSPRQSDVMIV-AGTLCNKMAPA----LRKVYDQM-TEPKWVISM 109 (693)
Q Consensus 36 ~~lw~~~~~c~gc~~e~l~~~~~~~d~~~~~~~~~~~p~~~Dil~v-eG~v~~~~~~~----~~~~~~~~-~~~~~vva~ 109 (693)
+.++..++||.=+ ..++..-.-.|.+.|...+..+.+||+++| |=+|+.+.... +..+.++. .+++..|.+
T Consensus 14 ~~~~i~T~GC~~N---~~dse~~~~~L~~~G~~~~~~~e~ADvvviNTCtv~~~A~~k~~~~i~~~~~~k~~~p~~~Vvv 90 (502)
T PRK14326 14 RTYQVRTYGCQMN---VHDSERLAGLLEAAGYVRAAEGQDADVVVFNTCAVRENADNRLYGNLGHLAPVKRANPGMQIAV 90 (502)
T ss_pred CEEEEEecCCCCc---HHHHHHHHHHHHHCCCEECCCcCCCCEEEEECCCeeehHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 3467777766533 333322223466667777888889998877 45555544222 22332222 236677888
Q ss_pred cccCCC
Q psy5227 110 GSCANG 115 (693)
Q Consensus 110 G~CA~~ 115 (693)
|-|-..
T Consensus 91 gGc~a~ 96 (502)
T PRK14326 91 GGCLAQ 96 (502)
T ss_pred ECcccc
Confidence 877554
No 82
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=40.99 E-value=17 Score=40.71 Aligned_cols=75 Identities=12% Similarity=0.251 Sum_probs=42.9
Q ss_pred ccccCCCCCchHHHHHhhcCCccccccccceeccCCCCccEEEEccccCCCc-H-HHH---HHHHHHc-CCCceEEeecc
Q psy5227 38 MWPMTFGLACCAIEMMHAGASRYDLDRFGIMFRPSPRQSDVMIVAGTLCNKM-A-PAL---RKVYDQM-TEPKWVISMGS 111 (693)
Q Consensus 38 lw~~~~~c~gc~~e~l~~~~~~~d~~~~~~~~~~~p~~~Dil~veG~v~~~~-~-~~~---~~~~~~~-~~~~~vva~G~ 111 (693)
++..++||.= +...+..-.-.+.+.|+..++.+..||+++|..-.-++. . +.. ..+.++. .+|...|.++-
T Consensus 4 ~~i~t~GC~~---N~~dse~~~~~l~~~G~~~~~~~~~AD~viiNTC~v~~~a~~~~~~~i~~~~~~~~~~~~~~ivv~G 80 (418)
T PRK14336 4 YYLWTIGCQM---NQAESERLGRLFELWGYSLADKAEDAELVLVNSCVVREHAENKVINRLHLLRKLKNKNPKLKIALTG 80 (418)
T ss_pred EEEEecCCCC---cHHHHHHHHHHHHHCcCEECCCcccCCEEEEecccEecHHHHHHHHHHHHHHHHHhhCCCCEEEEEC
Confidence 5666776653 333333333357778888888889999988876433322 2 222 2332222 23556677777
Q ss_pred cCCC
Q psy5227 112 CANG 115 (693)
Q Consensus 112 CA~~ 115 (693)
|.+.
T Consensus 81 C~~~ 84 (418)
T PRK14336 81 CLVG 84 (418)
T ss_pred Chhc
Confidence 7555
No 83
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=40.65 E-value=20 Score=40.70 Aligned_cols=75 Identities=12% Similarity=0.134 Sum_probs=43.8
Q ss_pred ccccCCCCCchHHHHHhhcCCccccccccceeccCCCCccEEEEc-cccCCCcHHH-HH---HHHHHcCCCceEEeeccc
Q psy5227 38 MWPMTFGLACCAIEMMHAGASRYDLDRFGIMFRPSPRQSDVMIVA-GTLCNKMAPA-LR---KVYDQMTEPKWVISMGSC 112 (693)
Q Consensus 38 lw~~~~~c~gc~~e~l~~~~~~~d~~~~~~~~~~~p~~~Dil~ve-G~v~~~~~~~-~~---~~~~~~~~~~~vva~G~C 112 (693)
++..++|| .++...+..-.-.|.+.|...++.+..||++||- =+|+.+.... +. .+.+...+++..|.+|-|
T Consensus 3 ~~i~t~GC---~~N~~dse~~~~~l~~~G~~~~~~~~~ADv~iiNTC~v~~~A~~k~~~~~~~~~~~k~~~~~~ivv~GC 79 (455)
T PRK14335 3 YFFETYGC---QMNVAESASMEQLLLARGWTKAVDAETCDVLIINTCSVRITAETRVFGRLGLFSSLKKKRAFFIILMGC 79 (455)
T ss_pred EEEEEcCC---CCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEeccceechHHHHHHHHHHHHHHhhhCCCcEEEEecc
Confidence 44556655 4444444333334666788888889999988774 3454433222 12 333334567777888878
Q ss_pred CCC
Q psy5227 113 ANG 115 (693)
Q Consensus 113 A~~ 115 (693)
-+.
T Consensus 80 ~a~ 82 (455)
T PRK14335 80 MAE 82 (455)
T ss_pred ccc
Confidence 544
No 84
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=40.55 E-value=16 Score=40.83 Aligned_cols=67 Identities=21% Similarity=0.333 Sum_probs=38.7
Q ss_pred chHHHHHhhcCCccccccccceeccCCCCccEEEEccc-cCCCc----HHHHHHHHHHcCCCceEEeecccCCC
Q psy5227 47 CCAIEMMHAGASRYDLDRFGIMFRPSPRQSDVMIVAGT-LCNKM----APALRKVYDQMTEPKWVISMGSCANG 115 (693)
Q Consensus 47 gc~~e~l~~~~~~~d~~~~~~~~~~~p~~~Dil~veG~-v~~~~----~~~~~~~~~~~~~~~~vva~G~CA~~ 115 (693)
||.++..++..-.-.|...|+..++.+..||+++|..- ++.+. ...++.+++. .|+..|.+|-|-..
T Consensus 5 GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aD~v~intctv~~~a~~~~~~~i~~~k~~--~p~~~vvvgGc~a~ 76 (414)
T TIGR01579 5 GCRVNQYESESLKNQLIQKGYEVVPDEDKADVYIINTCTVTAKADSKARRAIRRARRQ--NPTAKIIVTGCYAQ 76 (414)
T ss_pred CCCCCHHHHHHHHHHHHHCcCEECCCcccCCEEEEeccccchHHHHHHHHHHHHHHhh--CCCcEEEEECCccc
Confidence 45555544433333456667777777889999999874 33322 2233333332 35566777777654
No 85
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=38.68 E-value=17 Score=41.07 Aligned_cols=75 Identities=17% Similarity=0.204 Sum_probs=41.4
Q ss_pred ccccCCCCCchHHHHHhhcCCccccccccceeccCCCCccEEEEc-cccCCCcHHH-HHHH---HHHc-CCCceEEeecc
Q psy5227 38 MWPMTFGLACCAIEMMHAGASRYDLDRFGIMFRPSPRQSDVMIVA-GTLCNKMAPA-LRKV---YDQM-TEPKWVISMGS 111 (693)
Q Consensus 38 lw~~~~~c~gc~~e~l~~~~~~~d~~~~~~~~~~~p~~~Dil~ve-G~v~~~~~~~-~~~~---~~~~-~~~~~vva~G~ 111 (693)
++..++||.=++.+ +..-.-.+.+.|+..++.+..||+++|. =+|+.+.... ...+ .++. ..|+..|.+|.
T Consensus 3 ~~i~t~GC~~N~~d---s~~~~~~l~~~G~~~~~~~~~aDviiiNTC~v~~~a~~k~~~~i~~~~~~k~~~p~~~ivv~G 79 (437)
T PRK14331 3 YYIKTFGCQMNFND---SEKIKGILQTLGYEPADDWEEADLILVNTCTIREKPDQKVLSHLGEYKKIKEKNPNALIGVCG 79 (437)
T ss_pred EEEEecCCCCcHHH---HHHHHHHHHHCcCEECCCcccCCEEEEeCcceecHHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 45566766543333 3222223666788888888899988775 4455433222 2222 2222 24777777777
Q ss_pred cCCC
Q psy5227 112 CANG 115 (693)
Q Consensus 112 CA~~ 115 (693)
|-..
T Consensus 80 c~a~ 83 (437)
T PRK14331 80 CLAQ 83 (437)
T ss_pred chhc
Confidence 7443
No 86
>KOG1748|consensus
Probab=38.52 E-value=21 Score=33.15 Aligned_cols=36 Identities=28% Similarity=0.351 Sum_probs=30.9
Q ss_pred HHHHHHHHHHcCCCCCh-hhHHHHHHHHHHHHHHHHH
Q psy5227 352 HAYVMAIEKLLNIKIPI-RAQYIRVMFDEITRLLNHL 387 (693)
Q Consensus 352 ~A~~~AvE~a~gievp~-ra~~lR~ll~elerI~sHl 387 (693)
+=-+||+|+=+|+|+|+ .|+.+..+-.-++.|++|.
T Consensus 91 VEiVMAlEEEFgiEIpd~dAdki~t~~da~~yI~~~~ 127 (131)
T KOG1748|consen 91 VEIVMALEEEFGIEIPDEDADKIKTVRDAADYIADKP 127 (131)
T ss_pred chhhhhhHHHhCCccCcchhhhhCCHHHHHHHHHhcc
Confidence 34689999999999885 6899999999999998874
No 87
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=37.89 E-value=23 Score=40.43 Aligned_cols=77 Identities=13% Similarity=0.160 Sum_probs=44.9
Q ss_pred ccccccCCCCCchHHHHHhhcCCccccccccceeccCCCCccEEEEccccCCCc-----HHHHHHHHHHc-CCCceEEee
Q psy5227 36 SSMWPMTFGLACCAIEMMHAGASRYDLDRFGIMFRPSPRQSDVMIVAGTLCNKM-----APALRKVYDQM-TEPKWVISM 109 (693)
Q Consensus 36 ~~lw~~~~~c~gc~~e~l~~~~~~~d~~~~~~~~~~~p~~~Dil~veG~v~~~~-----~~~~~~~~~~~-~~~~~vva~ 109 (693)
..++..++||.=++.+-- .-.-.|...|+..+..+..||+++|..---++. ...+..+.++. ..|...|.+
T Consensus 24 ~~~~i~t~GC~~N~~dse---~~~~~l~~~G~~~~~~~~~ADiviiNTC~v~~~a~~k~~~~i~~~~~~k~~~p~~~ivv 100 (467)
T PRK14329 24 KKLFIESYGCQMNFADSE---IVASILQMAGYNTTENLEEADLVLVNTCSIRDNAEQKVRKRLEKFNALKKKNPKLIVGV 100 (467)
T ss_pred CEEEEEecCCCCcHHHHH---HHHHHHHHCcCEECCCcccCCEEEEeCcceechHHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 447788887754433321 112235667777788889999999977544432 12221112222 246777888
Q ss_pred cccCCC
Q psy5227 110 GSCANG 115 (693)
Q Consensus 110 G~CA~~ 115 (693)
|-|-..
T Consensus 101 gGc~a~ 106 (467)
T PRK14329 101 LGCMAE 106 (467)
T ss_pred ECChhc
Confidence 878655
No 88
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=37.16 E-value=26 Score=39.64 Aligned_cols=42 Identities=19% Similarity=0.225 Sum_probs=27.8
Q ss_pred ccccCCCCCchHHHHHhhcCCccccccccceeccCCCCccEEEEc
Q psy5227 38 MWPMTFGLACCAIEMMHAGASRYDLDRFGIMFRPSPRQSDVMIVA 82 (693)
Q Consensus 38 lw~~~~~c~gc~~e~l~~~~~~~d~~~~~~~~~~~p~~~Dil~ve 82 (693)
++..++||. ++..++..-.-.|...|...++.+.+||+++|.
T Consensus 10 ~~i~t~GC~---~N~~dse~~~~~l~~~G~~~~~~~~~aD~ivin 51 (440)
T PRK14862 10 IGFVSLGCP---KALVDSERILTQLRAEGYEISPSYDGADLVIVN 51 (440)
T ss_pred EEEEEcCCC---CcHHHHHHHHHHHHHCcCEECCCcccCCEEEEe
Confidence 566677664 443333322334666788888889999999997
No 89
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=36.37 E-value=22 Score=40.15 Aligned_cols=75 Identities=15% Similarity=0.276 Sum_probs=42.3
Q ss_pred ccccCCCCCchHHHHHhhcCCccccccccceeccCCCCccEEEEccccCCCc-H-HH---HHHHHHHc-CCCceEEeecc
Q psy5227 38 MWPMTFGLACCAIEMMHAGASRYDLDRFGIMFRPSPRQSDVMIVAGTLCNKM-A-PA---LRKVYDQM-TEPKWVISMGS 111 (693)
Q Consensus 38 lw~~~~~c~gc~~e~l~~~~~~~d~~~~~~~~~~~p~~~Dil~veG~v~~~~-~-~~---~~~~~~~~-~~~~~vva~G~ 111 (693)
+...++||.=++.+--.+ .-.|...|...++.+..||+++|.----++. . +. +..+.++. ..|+..|.+|-
T Consensus 6 ~~i~t~GC~~N~~ds~~~---~~~l~~~g~~~~~~~~~aDvviinTC~v~~~a~~~~~~~i~~~~~~k~~~p~~~vvvgG 82 (444)
T PRK14325 6 LYIKTYGCQMNEYDSSKM---ADLLGAEGYELTDDPEEADLILLNTCSIREKAQEKVFSELGRWRKLKEKNPDLIIGVGG 82 (444)
T ss_pred EEEEEcCCCCcHHHHHHH---HHHHHHCcCEECCCcCCCCEEEEEcceeeehHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 455677775444443222 2245667777888889999999976443332 2 22 22232222 23666777777
Q ss_pred cCCC
Q psy5227 112 CANG 115 (693)
Q Consensus 112 CA~~ 115 (693)
|..+
T Consensus 83 c~as 86 (444)
T PRK14325 83 CVAQ 86 (444)
T ss_pred chhc
Confidence 7554
No 90
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=35.25 E-value=17 Score=40.76 Aligned_cols=71 Identities=13% Similarity=0.266 Sum_probs=38.0
Q ss_pred cccCCCCCchHHHHHhhcCCccccccccceeccCCCCccEEEEccccCCCc--HHHHHHHHHHc-CCCceEEeecccCC
Q psy5227 39 WPMTFGLACCAIEMMHAGASRYDLDRFGIMFRPSPRQSDVMIVAGTLCNKM--APALRKVYDQM-TEPKWVISMGSCAN 114 (693)
Q Consensus 39 w~~~~~c~gc~~e~l~~~~~~~d~~~~~~~~~~~p~~~Dil~veG~v~~~~--~~~~~~~~~~~-~~~~~vva~G~CA~ 114 (693)
...++|| .++...+..-.-.|.+.|+..+..+..||+++|.----++. .+.+..+.++. .+++ |.+|-|-.
T Consensus 3 ~~~t~GC---~~N~~ds~~~~~~l~~~G~~~~~~~~~ADviiinTC~v~~~a~~~~~~~i~~~~~~~~~--vvv~GC~a 76 (420)
T TIGR01578 3 YVETYGC---TLNNGDSEIMKNSLAAYGHELVNNAEEADLAILNTCTVKNKTEDTMLYRIESLMRNGKH--VVVAGCMP 76 (420)
T ss_pred EEEecCC---CCcHHHHHHHHHHHHHCCCEECCCcccCCEEEEEeeeeeehHHHHHHHHHHHHHhcCCC--EEEECCcC
Confidence 3445555 44444333223346677877778888999998875433322 22333344432 2333 55655643
No 91
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=34.21 E-value=32 Score=38.82 Aligned_cols=75 Identities=13% Similarity=0.307 Sum_probs=42.5
Q ss_pred ccccCCCCCchHHHHHhhcCCccccccc-cceeccCCCCccEEEEcc-ccCCCcH-HHHHHH---HHHc-CCCceEEeec
Q psy5227 38 MWPMTFGLACCAIEMMHAGASRYDLDRF-GIMFRPSPRQSDVMIVAG-TLCNKMA-PALRKV---YDQM-TEPKWVISMG 110 (693)
Q Consensus 38 lw~~~~~c~gc~~e~l~~~~~~~d~~~~-~~~~~~~p~~~Dil~veG-~v~~~~~-~~~~~~---~~~~-~~~~~vva~G 110 (693)
++..++||. ++...+..-.-.|.+. |+..++.+..||+++|.= +|+.+.. +....+ .++. .+|+..|.+|
T Consensus 2 ~~i~t~GC~---~N~~dse~~~~~l~~~~G~~~~~~~~~aDv~iiNTC~v~~~a~~k~~~~i~~~~~~k~~~~~~~ivv~ 78 (438)
T TIGR01574 2 LFIQTYGCQ---MNVRDSEHMAALLTAKEGYALTEDAKEADVLLINTCSVREKAEHKVFGELGGFKKLKKKNPDLIIGVC 78 (438)
T ss_pred eEEEeCCCC---CcHHHHHHHHHHHHhcCCcEECCCcccCCEEEEeccCeechHHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 345566654 4444333333456667 888888888999888754 4443332 222222 3332 2466777787
Q ss_pred ccCCC
Q psy5227 111 SCANG 115 (693)
Q Consensus 111 ~CA~~ 115 (693)
-|...
T Consensus 79 GC~a~ 83 (438)
T TIGR01574 79 GCMAS 83 (438)
T ss_pred Ccccc
Confidence 78655
No 92
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=30.32 E-value=33 Score=38.75 Aligned_cols=75 Identities=13% Similarity=0.197 Sum_probs=42.1
Q ss_pred ccccCCCCCchHHHHHhhcCCccccccccceeccCCCCccEEEEcc-ccCCCcH-HH---HHHHHHHc-CCCceEEeecc
Q psy5227 38 MWPMTFGLACCAIEMMHAGASRYDLDRFGIMFRPSPRQSDVMIVAG-TLCNKMA-PA---LRKVYDQM-TEPKWVISMGS 111 (693)
Q Consensus 38 lw~~~~~c~gc~~e~l~~~~~~~d~~~~~~~~~~~p~~~Dil~veG-~v~~~~~-~~---~~~~~~~~-~~~~~vva~G~ 111 (693)
+...++||.=++.+--.+ .-.|...|+..+..+..||+++|.= +|+.+.. +. +..+.++. .+++..|.+|-
T Consensus 4 ~~~~t~GC~~N~~ds~~~---~~~l~~~G~~~~~~~~~ADv~iiNTC~v~~~a~~k~~~~i~~~~~~~~~~~~~~vvv~G 80 (439)
T PRK14328 4 YFIETYGCQMNEEDSEKL---AGMLKSMGYERTENREEADIIIFNTCCVRENAENKVFGNLGELKKLKEKNPNLIIGVCG 80 (439)
T ss_pred EEEEEeCCCCCHHHHHHH---HHHHHHCcCEECCCcCcCCEEEEecccEechHHHHHHHHHHHHHHHHhhCCCCEEEEEC
Confidence 556677775444443222 2245667888888889999888754 3333322 22 23343332 24666677766
Q ss_pred cCCC
Q psy5227 112 CANG 115 (693)
Q Consensus 112 CA~~ 115 (693)
|.+.
T Consensus 81 C~a~ 84 (439)
T PRK14328 81 CMMQ 84 (439)
T ss_pred chhc
Confidence 7443
No 93
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=28.84 E-value=38 Score=38.38 Aligned_cols=76 Identities=17% Similarity=0.281 Sum_probs=44.7
Q ss_pred cccccCCCCCchHHHHHhhcCCccccccccceeccCCCCccEEEEcc-ccCCCcH-HHHHHHHHH----cCCCceEEeec
Q psy5227 37 SMWPMTFGLACCAIEMMHAGASRYDLDRFGIMFRPSPRQSDVMIVAG-TLCNKMA-PALRKVYDQ----MTEPKWVISMG 110 (693)
Q Consensus 37 ~lw~~~~~c~gc~~e~l~~~~~~~d~~~~~~~~~~~p~~~Dil~veG-~v~~~~~-~~~~~~~~~----~~~~~~vva~G 110 (693)
.++..++||.=+.. .+..-.-.|.+.|+..+..+.+||++||.- +|+.+.. +.+..+.++ ...|+..|.+|
T Consensus 8 ~~~i~t~GC~~N~~---ds~~~~~~l~~~G~~~~~~~~~ADiiiiNTC~v~~~a~~~~~~~i~~~~~~k~~~p~~~vvv~ 84 (448)
T PRK14333 8 SYWITTFGCQMNKA---DSERMAGILEDMGYQWAEDELQADLVLYNTCTIRDNAEQKVYSYLGRQAKRKHKNPDLTLVVA 84 (448)
T ss_pred EEEEEEcCCCCcHH---HHHHHHHHHHHCcCEECCCcccCCEEEEEeeeeeehHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 56677777643333 322222346777888888889999888754 4444332 222223222 23477788888
Q ss_pred ccCCC
Q psy5227 111 SCANG 115 (693)
Q Consensus 111 ~CA~~ 115 (693)
-|...
T Consensus 85 Gc~a~ 89 (448)
T PRK14333 85 GCVAQ 89 (448)
T ss_pred CccCc
Confidence 88655
No 94
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=28.08 E-value=53 Score=30.94 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=18.3
Q ss_pred CCccEEEEccccCCCcHHHHHHHHH
Q psy5227 74 RQSDVMIVAGTLCNKMAPALRKVYD 98 (693)
Q Consensus 74 ~~~Dil~veG~v~~~~~~~~~~~~~ 98 (693)
.++|+++++|.++.........+.+
T Consensus 65 ~~~DliIttGG~g~g~~D~t~~ai~ 89 (144)
T TIGR00177 65 DEADVVLTTGGTGVGPRDVTPEALE 89 (144)
T ss_pred hCCCEEEECCCCCCCCCccHHHHHH
Confidence 3799999999998876655444444
No 95
>COG3976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.22 E-value=1.5e+02 Score=27.42 Aligned_cols=68 Identities=16% Similarity=0.188 Sum_probs=46.8
Q ss_pred ccceEEEEEEcCCeEEEEEeeeccc--hhhHHHHhhCCCcCccccccccccccch-hhHHHHHHHHHHHHcC
Q psy5227 295 HGVLRLILELEGEVVRKADPHIGLL--HRATEKLAEQRTYLQSLPYMDRLDYVSM-MCNEHAYVMAIEKLLN 363 (693)
Q Consensus 295 ~G~~r~~l~v~Ge~I~~~~~~~g~~--hRG~Ekllegr~~~~a~~l~~RIcGic~-~ah~~A~~~AvE~a~g 363 (693)
-|.+.+.+.+.+++|..+++ +++. .|.+++.+++-+.+-.-.-.--++-++. ..-+-|..+|||+++.
T Consensus 61 ~g~lqv~vtIk~grItaikv-l~h~~d~~~~~~a~evvp~eivkAQStdVD~iSgAT~tS~aiI~svekaLe 131 (135)
T COG3976 61 YGILQVQVTIKGGRITAIKV-LKHPSDRRTNRQALEVVPDEIVKAQSTDVDIISGATLTSRAIIQSVEKALE 131 (135)
T ss_pred cceEEEEEEEecCcEEEEEE-ecCCCCcchhhhhcccccHHHhhccccccceeeccccchHHHHHHHHHHHh
Confidence 57789999999999999994 5544 3778898888776533322223333332 3445788999999875
No 96
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=26.13 E-value=49 Score=38.18 Aligned_cols=78 Identities=10% Similarity=0.213 Sum_probs=44.3
Q ss_pred ccccccccCCCCCchHHHHHhhcCCccccccccceeccCCCCccEEEEc-cccCCCcH-HHHHHH---HHH-cCCCceEE
Q psy5227 34 RTSSMWPMTFGLACCAIEMMHAGASRYDLDRFGIMFRPSPRQSDVMIVA-GTLCNKMA-PALRKV---YDQ-MTEPKWVI 107 (693)
Q Consensus 34 r~~~lw~~~~~c~gc~~e~l~~~~~~~d~~~~~~~~~~~p~~~Dil~ve-G~v~~~~~-~~~~~~---~~~-~~~~~~vv 107 (693)
+...+++.+|||.= +..++..-.-.|++.|...+..+.+||++||. =+|+.+.. +....+ .++ ..+|+.+|
T Consensus 65 ~~~~~~i~T~GC~~---N~~Dse~~~~~L~~~Gy~~~~~~~~ADviiiNTC~V~~~Ae~k~~~~i~~l~~~k~~~p~~~i 141 (509)
T PRK14327 65 NGRKFYIRTYGCQM---NEHDTEVMAGIFEALGYEPTDDTEDADVILLNTCAIRENAENKVFGEIGHLKHLKRENPDLLI 141 (509)
T ss_pred CCCEEEEEeCCCCc---cHHHHHHHHHHHHHCcCEECCCcCCCCEEEEECCCCccHHHHHHHHHHHHHHHHHhhCCCCEE
Confidence 33456777776643 33333222234677788888888999987774 45554332 222222 332 23477777
Q ss_pred eecccCC
Q psy5227 108 SMGSCAN 114 (693)
Q Consensus 108 a~G~CA~ 114 (693)
++.-|-.
T Consensus 142 ~v~GCma 148 (509)
T PRK14327 142 GVCGCMS 148 (509)
T ss_pred EEEcchh
Confidence 7776743
No 97
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=25.60 E-value=40 Score=38.22 Aligned_cols=75 Identities=11% Similarity=0.183 Sum_probs=43.9
Q ss_pred ccccCCCCCchHHHHHhhcCCccccccccceeccCCCCccEEEEcc-ccCCCcHHHH----HHHHHH-cCCCceEEeecc
Q psy5227 38 MWPMTFGLACCAIEMMHAGASRYDLDRFGIMFRPSPRQSDVMIVAG-TLCNKMAPAL----RKVYDQ-MTEPKWVISMGS 111 (693)
Q Consensus 38 lw~~~~~c~gc~~e~l~~~~~~~d~~~~~~~~~~~p~~~Dil~veG-~v~~~~~~~~----~~~~~~-~~~~~~vva~G~ 111 (693)
+++.++||.=+..+ +..-.-.|.+.|...+..+.+||++||.- +|+.+..... ..+.++ ..+|+..|.++-
T Consensus 9 ~~i~tlGC~~N~~d---se~~~~~l~~~G~~~~~~~~~ADviiiNTC~v~~~A~~k~~~~i~~~~~~k~~~~~~~ivv~G 85 (445)
T PRK14340 9 FYIHTFGCQMNQAD---SEIITALLQDEGYVPAASEEDADIVLLNTCAVRENAVERIGHYLQHLKGAKRRRKGLLVGVLG 85 (445)
T ss_pred EEEEecCCCCcHHH---HHHHHHHHHHCcCEECCCcccCCEEEEEeeeeeccHHHHHHHHHHHHHHHhhcCCCCEEEEeC
Confidence 66677776544333 22222246667888888899999888753 4444333222 222222 235778888888
Q ss_pred cCCC
Q psy5227 112 CANG 115 (693)
Q Consensus 112 CA~~ 115 (693)
|-..
T Consensus 86 C~a~ 89 (445)
T PRK14340 86 CVPQ 89 (445)
T ss_pred cccc
Confidence 8654
No 98
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=24.37 E-value=27 Score=36.28 Aligned_cols=103 Identities=16% Similarity=0.196 Sum_probs=61.0
Q ss_pred CCCCCCcccCCCCcccccccccccccccccCCCCCchHHHHH----hhcCCccccccccceeccCCCCccEEEEccccCC
Q psy5227 12 PQKNSPYECGFKEFGDKLINWTRTSSMWPMTFGLACCAIEMM----HAGASRYDLDRFGIMFRPSPRQSDVMIVAGTLCN 87 (693)
Q Consensus 12 ~~K~~pyECGf~p~~~~rir~~r~~~lw~~~~~c~gc~~e~l----~~~~~~~d~~~~~~~~~~~p~~~Dil~veG~v~~ 87 (693)
+++..=.=||++|+.-.++++.-....|..++.-. .++|+ +...+..+..-.++...+.+..+|+.++==.++.
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~--~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQ--LVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLPC 183 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHH--HHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HHH
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHH--HHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHHH
Confidence 44444566999999999999988788888888433 34444 3455555544444444445667999888655543
Q ss_pred Cc---HHHHHHHHHHcCCCceEEeecccCCCC
Q psy5227 88 KM---APALRKVYDQMTEPKWVISMGSCANGG 116 (693)
Q Consensus 88 ~~---~~~~~~~~~~~~~~~~vva~G~CA~~G 116 (693)
=+ ......+.+...-+.+||++-+=+..|
T Consensus 184 le~q~~g~g~~ll~~~~~~~~vVSfPtrSL~g 215 (251)
T PF07091_consen 184 LERQRRGAGLELLDALRSPHVVVSFPTRSLGG 215 (251)
T ss_dssp HHHHSTTHHHHHHHHSCESEEEEEEES-----
T ss_pred HHHHhcchHHHHHHHhCCCeEEEecccccccc
Confidence 11 223345677778899999987766665
No 99
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.93 E-value=49 Score=37.64 Aligned_cols=75 Identities=15% Similarity=0.218 Sum_probs=40.6
Q ss_pred ccccCCCCCchHHHHHhhcCCccccccccceeccCCCCccEEEEcc-ccCCCcHHH-H---HHHHHHc-CCCceEEeecc
Q psy5227 38 MWPMTFGLACCAIEMMHAGASRYDLDRFGIMFRPSPRQSDVMIVAG-TLCNKMAPA-L---RKVYDQM-TEPKWVISMGS 111 (693)
Q Consensus 38 lw~~~~~c~gc~~e~l~~~~~~~d~~~~~~~~~~~p~~~Dil~veG-~v~~~~~~~-~---~~~~~~~-~~~~~vva~G~ 111 (693)
++..++||.=+..+ +..-.-.+...|+..+..+.+||+++|.- +|+.+.... . ..+.++. ..|...|.++-
T Consensus 23 ~~i~t~GC~~N~~d---se~~~~~l~~~G~~~~~~~~~AD~~iiNTC~v~~~a~~~~~~~i~~~~~~k~~~p~~~ivv~G 99 (459)
T PRK14338 23 YYVWTVGCQMNVSD---SERLEAALQGVGYSPAERPEDADFIVLNSCSVRASAEERILGKLGELQRLKRQRPDTRIVLWG 99 (459)
T ss_pred EEEEecCCCCCHHH---HHHHHHHHHHCcCEECCCcccCCEEEEeccceeeHHHHHHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 67777877433333 22222246667777888889999887743 444433222 1 1232222 23555677766
Q ss_pred cCCC
Q psy5227 112 CANG 115 (693)
Q Consensus 112 CA~~ 115 (693)
|-..
T Consensus 100 C~a~ 103 (459)
T PRK14338 100 CMVG 103 (459)
T ss_pred Cccc
Confidence 7443
No 100
>KOG2990|consensus
Probab=23.58 E-value=64 Score=33.85 Aligned_cols=54 Identities=19% Similarity=0.499 Sum_probs=34.0
Q ss_pred cccccccccccccCCCCCchHHHHHhhcCCcccccc--cc--------------------ceeccCCCCccEEEEccccC
Q psy5227 29 LINWTRTSSMWPMTFGLACCAIEMMHAGASRYDLDR--FG--------------------IMFRPSPRQSDVMIVAGTLC 86 (693)
Q Consensus 29 rir~~r~~~lw~~~~~c~gc~~e~l~~~~~~~d~~~--~~--------------------~~~~~~p~~~Dil~veG~v~ 86 (693)
-+||-..|.|| |+||.--+- ..-+|..+. .| |...-.|..+|.+|++|+=.
T Consensus 44 vIRFEMPynIW-----C~gC~nhIg--mGvRyNAeKkkvGnYYtTpiw~FrmKchlC~n~i~iqTDP~NceYvI~SGaqR 116 (317)
T KOG2990|consen 44 VIRFEMPYNIW-----CDGCKNHIG--MGVRYNAEKKKVGNYYTTPIWSFRMKCHLCDNYIVIQTDPKNCEYVITSGAQR 116 (317)
T ss_pred EEEEecccchh-----hccHHHhhh--ccceechhhhhccccccCcccchhhcccccCCceeeecCCCCceEEEeccccc
Confidence 46788888888 999987764 222232221 11 12222388999999999876
Q ss_pred CCc
Q psy5227 87 NKM 89 (693)
Q Consensus 87 ~~~ 89 (693)
..+
T Consensus 117 Kee 119 (317)
T KOG2990|consen 117 KEE 119 (317)
T ss_pred ccc
Confidence 533
No 101
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=23.46 E-value=1.5e+02 Score=28.09 Aligned_cols=39 Identities=15% Similarity=0.243 Sum_probs=29.8
Q ss_pred CCCccEEEEccccC----CCcHHHHHHHHHHcCCCceEEeecc
Q psy5227 73 PRQSDVMIVAGTLC----NKMAPALRKVYDQMTEPKWVISMGS 111 (693)
Q Consensus 73 p~~~Dil~veG~v~----~~~~~~~~~~~~~~~~~~~vva~G~ 111 (693)
+...|+++|-|... .+....++++.++.++.++|+|+++
T Consensus 59 ~~~~D~lvvpg~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~ 101 (166)
T PF13278_consen 59 APDFDILVVPGGPGFDAAAKDPALLDWLRQQHAQGTYIAAICT 101 (166)
T ss_dssp CSCCSEEEEE-STTHHHHTT-HHHHHHHHHHHCCTSEEEEETT
T ss_pred cccCCEEEeCCCCCchhcccCHHHHHHhhhhhccceEEeeeeh
Confidence 46799999999888 4556667778888888999998864
No 102
>PRK12449 acyl carrier protein; Provisional
Probab=22.86 E-value=1.1e+02 Score=25.33 Aligned_cols=43 Identities=19% Similarity=0.219 Sum_probs=29.8
Q ss_pred cccchhhHHHHHHHHHHHHcCCCCChhh-HHHHHHHHHHHHHHHH
Q psy5227 343 DYVSMMCNEHAYVMAIEKLLNIKIPIRA-QYIRVMFDEITRLLNH 386 (693)
Q Consensus 343 cGic~~ah~~A~~~AvE~a~gievp~ra-~~lR~ll~elerI~sH 386 (693)
=|..|+. .+..+.++|+.+|+++|+.. ..++++-.-.+.|.+|
T Consensus 35 lg~DSl~-~~~li~~lE~~f~i~i~~~~~~~~~ti~~l~~~l~~~ 78 (80)
T PRK12449 35 LAVDSIE-LVEFIINVEDEFHIAIPDEDVEDMVSMGDLLDYLVQR 78 (80)
T ss_pred cCCcHHH-HHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHHHh
Confidence 3566766 57889999999999999763 4455555555555444
No 103
>PRK09271 flavodoxin; Provisional
Probab=21.94 E-value=1.5e+02 Score=28.21 Aligned_cols=90 Identities=16% Similarity=0.179 Sum_probs=45.4
Q ss_pred CccEEEEcc------ccCCCcHHHHHHHHHHcCCCceEEeeccc-CCCCC-cCCcCCcc-ccCcceeeecceeccCCCCC
Q psy5227 75 QSDVMIVAG------TLCNKMAPALRKVYDQMTEPKWVISMGSC-ANGGG-YYHYSYSV-VRGCDRIVPVDVYIPGCPPT 145 (693)
Q Consensus 75 ~~Dil~veG------~v~~~~~~~~~~~~~~~~~~~~vva~G~C-A~~GG-i~~~~~~~-~~~~~~~v~vd~~ipGCPp~ 145 (693)
.+|++++-- ..+..+...++.+.+...+.|.+..+|++ ..++| .|...... ..-++...+. +.+..+|-.
T Consensus 51 ~~d~vilgt~T~~~G~~p~~~~~f~~~l~~~~~~~k~~avfgsgd~~~~~~~f~~a~~~~~~~l~~~~~~-l~~~~~p~~ 129 (160)
T PRK09271 51 DYDLYLLGTWTDNAGRTPPEMKRFIAELAETIGKPPNVAVFGTGETQWGEEYYCGAVHRMARFFGSSYPR-LKIEQMPHG 129 (160)
T ss_pred cCCEEEEECcccCCCcCCHHHHHHHHHHHHHhccCCeEEEEecCCCCcCccHHHHHHHHHHHHHhccCCc-eeeecCCcc
Confidence 456555533 23334566666666655567888888887 34554 12111000 0001111111 445556654
Q ss_pred ---hhhhHHHHHHHHHHHhhhcc
Q psy5227 146 ---AEALLYDYYSTMKILRDHVN 165 (693)
Q Consensus 146 ---p~~i~~~l~~ll~~Lr~~~~ 165 (693)
.+.+.+-+..++..++++.+
T Consensus 130 ~~d~~~~~~~~~~~~~~~~~~~~ 152 (160)
T PRK09271 130 ERDAAAIDNWTDKVLALCKNDPD 152 (160)
T ss_pred chhHHHHHHHHHHHHHHhhcCCC
Confidence 35666666667767766543
No 104
>PRK07117 acyl carrier protein; Validated
Probab=21.02 E-value=88 Score=26.46 Aligned_cols=44 Identities=18% Similarity=0.089 Sum_probs=32.6
Q ss_pred cccchhhHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHHHHHHHHH
Q psy5227 343 DYVSMMCNEHAYVMAIEKLLNIKIPIR-AQYIRVMFDEITRLLNHL 387 (693)
Q Consensus 343 cGic~~ah~~A~~~AvE~a~gievp~r-a~~lR~ll~elerI~sHl 387 (693)
-|+.|+- .+-.+.++|+-+|+++|+. ++.++++-.-...|.+|+
T Consensus 35 Lg~DSlD-~veiv~~led~f~i~I~~~~~~~i~Tv~d~v~~i~~~~ 79 (79)
T PRK07117 35 LGANSMD-RAEIVIMTLESLSLKIPLVEFAGAKNIGELADLLYAKL 79 (79)
T ss_pred cCCChHH-HHHHHHHHHHHHCCccCHHHHHhcCCHHHHHHHHHHhC
Confidence 4555544 5778899999999999965 455888877777777663
No 105
>KOG3210|consensus
Probab=20.89 E-value=75 Score=30.86 Aligned_cols=40 Identities=25% Similarity=0.512 Sum_probs=29.6
Q ss_pred CCccEEEEccccCCCcHH------HHHHHHHHcCCCceEEeecccCC
Q psy5227 74 RQSDVMIVAGTLCNKMAP------ALRKVYDQMTEPKWVISMGSCAN 114 (693)
Q Consensus 74 ~~~Dil~veG~v~~~~~~------~~~~~~~~~~~~~~vva~G~CA~ 114 (693)
.++|.|++-|.=++.|.. ....+++...+|.. +.+|+||.
T Consensus 55 aq~DaLIIPGGEST~mslia~~tgL~d~L~~fVhn~~k-~~WGTCAG 100 (226)
T KOG3210|consen 55 AQCDALIIPGGESTAMSLIAERTGLYDDLYAFVHNPSK-VTWGTCAG 100 (226)
T ss_pred hhCCEEEecCCchhHHHHHHhhhhhHHHHHHHhcCCCc-cceeechh
Confidence 579999999999987743 33456777777754 45999994
No 106
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=20.74 E-value=97 Score=28.62 Aligned_cols=24 Identities=8% Similarity=0.129 Sum_probs=17.4
Q ss_pred CccEEEEccccCCCcHHHHHHHHH
Q psy5227 75 QSDVMIVAGTLCNKMAPALRKVYD 98 (693)
Q Consensus 75 ~~Dil~veG~v~~~~~~~~~~~~~ 98 (693)
.+|+++++|.+..........+.+
T Consensus 58 ~~DlvittGG~g~g~~D~t~~ai~ 81 (133)
T cd00758 58 EADLVLTTGGTGVGRRDVTPEALA 81 (133)
T ss_pred cCCEEEECCCCCCCCCcchHHHHH
Confidence 489999999998776555444444
No 107
>TIGR01113 mtrE N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit E. coenzyme M methyltransferase subunit E in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=20.26 E-value=87 Score=32.32 Aligned_cols=40 Identities=25% Similarity=0.322 Sum_probs=31.8
Q ss_pred EEEEeeeccchhhHHHHhhCCCcCccccccccccccchhhHHHHHHHH
Q psy5227 310 RKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMA 357 (693)
Q Consensus 310 ~~~~~~~g~~hRG~Ekllegr~~~~a~~l~~RIcGic~~ah~~A~~~A 357 (693)
+++.+++||.||-|.|..-|-++.-.+ -|+++-.+|++..
T Consensus 34 VQLAPQmg~~HR~fNKAiSGEP~aygl--------~~~i~g~vA~~l~ 73 (283)
T TIGR01113 34 VQLAPQMGNLHRIFNKAISGEPVSYGL--------YCGIAGAVAYVLM 73 (283)
T ss_pred hhhchhcccHHHHhhhhccCCCchhHH--------HHHHHHHHHHHHH
Confidence 357789999999999999999876543 4777877887764
Done!