Query psy5227
Match_columns 693
No_of_seqs 492 out of 3149
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 20:56:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5227.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5227hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i9v_4 NADH-quinone oxidoreduc 100.0 5E-100 2E-104 828.5 26.1 387 280-693 23-409 (409)
2 2wpn_B Periplasmic [nifese] hy 100.0 1.7E-71 5.9E-76 626.2 26.3 351 284-691 18-493 (495)
3 1wui_L Periplasmic [NIFE] hydr 100.0 4.7E-70 1.6E-74 616.2 24.4 352 284-691 6-532 (534)
4 1yqw_Q Periplasmic [NIFE] hydr 100.0 3.8E-70 1.3E-74 618.2 23.5 347 284-691 15-547 (549)
5 1cc1_L Hydrogenase (large subu 100.0 1.3E-68 4.5E-73 602.7 27.5 355 280-691 9-496 (498)
6 1e3d_B [NIFE] hydrogenase larg 100.0 2.6E-66 8.8E-71 584.9 26.4 354 284-691 14-540 (542)
7 1yq9_H Periplasmic [NIFE] hydr 100.0 1.3E-63 4.6E-68 562.7 27.8 352 284-691 8-534 (536)
8 3ayx_A Membrane-bound hydrogen 100.0 3.9E-63 1.3E-67 562.6 25.4 369 284-691 18-594 (596)
9 3myr_B Nickel-dependent hydrog 100.0 8.5E-55 2.9E-59 487.8 29.8 369 284-691 4-559 (561)
10 3uqy_L Hydrogenase-1 large cha 100.0 1E-54 3.5E-59 486.7 30.0 374 283-691 17-580 (582)
11 3i9v_6 NADH-quinone oxidoreduc 100.0 2.9E-40 9.9E-45 315.7 7.1 144 20-164 17-162 (181)
12 3i9v_5 NADH-quinone oxidoreduc 100.0 3E-39 1E-43 318.9 3.8 164 145-329 30-198 (207)
13 1yq9_A Periplasmic [NIFE] hydr 100.0 1.7E-29 5.9E-34 258.7 5.1 128 33-160 5-166 (264)
14 1wui_S Periplasmic [NIFE] hydr 100.0 1.5E-29 5.3E-34 259.8 4.1 127 33-160 5-168 (267)
15 1h2a_S Hydrogenase; SO ligand, 99.9 3.8E-29 1.3E-33 261.6 4.7 126 32-158 54-216 (317)
16 1cc1_S Hydrogenase (small subu 99.9 8.9E-29 3E-33 255.6 5.8 128 34-161 7-183 (283)
17 2wpn_A Periplasmic [nifese] hy 99.9 1E-28 3.5E-33 258.6 5.0 128 34-161 41-212 (317)
18 3ayx_B Membrane-bound hydrogen 99.9 3.2E-28 1.1E-32 250.8 5.7 126 33-158 11-174 (283)
19 1yqw_A Periplasmic [NIFE] hydr 99.9 3.2E-27 1.1E-31 241.7 4.8 126 33-160 5-165 (264)
20 3rgw_S Membrane-bound hydrogen 99.9 9E-27 3.1E-31 243.6 6.9 127 33-159 5-166 (339)
21 3myr_A Hydrogenase (NIFE) smal 99.9 4.3E-27 1.5E-31 240.4 4.3 127 33-159 2-164 (269)
22 3uqy_S Hydrogenase-1 small cha 99.9 4.4E-27 1.5E-31 246.0 4.1 127 33-159 5-166 (335)
23 3mcr_A NADH dehydrogenase, sub 99.9 1.4E-24 4.7E-29 213.0 7.0 97 152-259 117-213 (213)
24 3rko_A NADH-quinone oxidoreduc 98.3 1.2E-08 4E-13 95.0 -6.6 42 2-43 34-75 (147)
25 2is8_A Molybdopterin biosynthe 30.6 8.5 0.00029 35.8 -0.6 18 75-92 62-79 (164)
26 3r07_C Putative lipoate-protei 29.8 1E+02 0.0036 25.5 6.1 56 628-684 10-69 (91)
27 3r07_C Putative lipoate-protei 29.0 52 0.0018 27.4 4.1 38 296-333 17-60 (91)
28 3lcv_B Sisomicin-gentamicin re 27.8 42 0.0015 34.0 3.9 93 18-110 139-236 (281)
29 2pbq_A Molybdenum cofactor bio 27.0 22 0.00074 33.5 1.5 26 137-162 132-157 (178)
30 2g2c_A Putative molybdenum cof 23.7 20 0.0007 33.2 0.6 15 75-89 69-83 (167)
No 1
>3i9v_4 NADH-quinone oxidoreductase subunit 4; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_4* 2fug_4* 3iam_4* 3ias_4* 3m9s_4*
Probab=100.00 E-value=5.2e-100 Score=828.50 Aligned_cols=387 Identities=48% Similarity=0.847 Sum_probs=371.8
Q ss_pred hccccccCcccCCCCccceEEEEEEcCCeEEEEEeeeccchhhHHHHhhCCCcCccccccccccccchhhHHHHHHHHHH
Q psy5227 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIE 359 (693)
Q Consensus 280 ~~~~~~~~GP~hp~~~G~~r~~l~v~Ge~I~~~~~~~g~~hRG~Ekllegr~~~~a~~l~~RIcGic~~ah~~A~~~AvE 359 (693)
.+.+++|+||+||++|||+||.+.++||+|+++++++||.||||||+++||++.|++++++||||+|+++|++||++|+|
T Consensus 23 ~~~~~l~~GP~Hp~~~G~lrl~l~ldge~V~~a~~~~g~~hRG~Ekl~egr~~~~~~~~~~Ricgic~~~h~~A~~~AvE 102 (409)
T 3i9v_4 23 TEVMTLNVGPQHPSTHGVLRLMVTLSGEEVLEVVPHIGYLHTGFEKTMEHRTYLQNITYTPRMDYLHSFAHDLAYALAVE 102 (409)
T ss_dssp ---CBCCBC-------CCCEECCBCSSSSCCBCCEECCTTCCCHHHHGGGSCTTGGGGTSTTSSSSSCHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCCCCceEEEEEEeCCEEEEEEEEecCCchhHHHHHcCCCHHHHHHHhhhhhhccHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHccCCccCCceeeCccccCC
Q psy5227 360 KLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDL 439 (693)
Q Consensus 360 ~a~gievp~ra~~lR~ll~elerI~sHl~~lg~~~~~~g~~~~~~~~~~~Re~~~~i~~~~~G~r~~~~~~~pGGv~~~~ 439 (693)
+++|+++|++|+++|+|++|+|||+|||+|++.++.|+|+.+.+++++++||.++++++.+||+|+|+++++||||++|+
T Consensus 103 ~~~gievP~ra~~iR~l~~eleRI~sHll~lg~~a~d~G~~t~~~~~~~~RE~~~~i~e~~~G~R~h~~~~~pGGv~~dl 182 (409)
T 3i9v_4 103 KLLGAVVPPRAETIRVILNELSRLASHLVFLGTGLLDLGALTPFFYAFRERETILDLFEWVTGQRFHHNYIRIGGVKEDL 182 (409)
T ss_dssp HHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHSSSSSCCCBCSSBBSSCC
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHcCCccccCceeeCCeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccchhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccChhhhhccccccccChhhhhhcCCccc
Q psy5227 440 PEIMPQYKSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519 (693)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~R~~~~G~l~~~~a~~~g~~Gp 519 (693)
+++ +++++.+.++++++.++++.+++.+|++|.+|++|+|+++.++|.+||+|||
T Consensus 183 ~~~-------------------------~~~~i~~~l~~~~~~~~e~~~l~~~n~i~~~R~~gvGvl~~e~A~~~g~tGp 237 (409)
T 3i9v_4 183 PEE-------------------------FVPELKKLLEVLPHRIDEYEALFAESPIFYERARGVGVIPPEVAIDLGLTGG 237 (409)
T ss_dssp CTT-------------------------HHHHHHHHHHHHHHHHHHHHHHHHSCTTHHHHHSSSSCBCHHHHHHHTCCSS
T ss_pred CHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHhhChHHHhhcCCccccCHHHHHHhCCcCc
Confidence 998 8889999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccCCCCCcCCcccccccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccCCCcccchhhh
Q psy5227 520 MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKGPVISNNNKITSPARI 599 (693)
Q Consensus 520 ~aRasG~~~D~R~~~py~~Y~~~~~~~~~~~~gd~~aR~~vR~~Ei~~s~~ii~q~l~~l~~~~g~~~~~~~~~~~p~~~ 599 (693)
++||||+++|+|+++||..|++++|++|++++||+|||++||+.|+.||++||+|++++|| +|++..+.+...+|.+.
T Consensus 238 ~~RaSGv~~D~R~~~PY~~Y~~~~f~v~~~~~GD~~aR~~VR~~E~~qSl~ii~q~l~~lp--~G~~~~~~~~~~~p~~~ 315 (409)
T 3i9v_4 238 SLRASGVNYDVRKAYPYSGYETYTFDVPLGERGDVFDRMLVRIREMRESVKIIKQALERLE--PGPVRDPNPQITPPPRH 315 (409)
T ss_dssp SSGGGTCCCCHHHHSCCSSGGGSCCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHTCC--CCCCBCCCTTTSCCCGG
T ss_pred ccccCCCccchhhcCcchhhccCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCcccccccccCCchh
Confidence 9999999999999999999999999999999999999999999999999999999999999 89999888877788899
Q ss_pred hhchhhhhhhhhhcccccccccCcceEEEEeeCCcceeEEEEEECCCCceeEEEEeCCcccCHHHHHHHHcCCChhhHHH
Q psy5227 600 NMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVT 679 (693)
Q Consensus 600 ~~~~~~~~~i~~~~~~~~~~~~~~Geg~g~vEapRG~L~h~v~~d~~g~i~r~~i~~PS~~N~~~le~~l~G~~i~d~~~ 679 (693)
+++..+|++|+||++++.++++|+|++|+++|||||+++||+++|++++|+|++||+|||+||++|+.+++|+.++|+++
T Consensus 316 ~~~~~~e~li~hf~~~~~~~~~p~Ge~~~~vEapRGe~~~~~~sdg~~~p~R~kir~Psf~nl~~l~~~~~G~~iaD~~~ 395 (409)
T 3i9v_4 316 LLETSMEAVIYHFKHYTEGFHPPKGEVYVPTESARGELGYYIVSDGGSMPYRVKVRAPSFVNLQSLPYACKGEQVPDMVA 395 (409)
T ss_dssp GGGTCHHHHHHHHHHHHSCCCCCSEEEECCEEETTEEEEEEEEECSSSSCSEEEEECHHHHTTTTTTTTTSSSCSGGGTH
T ss_pred hhhcchHHhhhhhhcccccccCCCceEEEEEEcCCcEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHCCCcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccccccccCCC
Q psy5227 680 IIGTQDIVFGEIDR 693 (693)
Q Consensus 680 ii~S~DpC~sc~dr 693 (693)
|++|||||++|+||
T Consensus 396 i~~S~D~~~~e~DR 409 (409)
T 3i9v_4 396 IIASLDPVMGDVDR 409 (409)
T ss_dssp HHHTTCCCHHHHHC
T ss_pred HHhCcCCCcccccC
Confidence 99999999999998
No 2
>2wpn_B Periplasmic [nifese] hydrogenase, large subunit, selenocysteine-containing; metal-binding, oxidoreductase, oxygen tolerance; HET: FSX SBY PSW; 2.04A {Desulfovibrio vulgaris}
Probab=100.00 E-value=1.7e-71 Score=626.16 Aligned_cols=351 Identities=17% Similarity=0.131 Sum_probs=299.9
Q ss_pred cccCcccCCCCccceEEEEEEcCCeEEEEEeeeccchhhHHHHhhCCCcCccccccccccccchhhHHHHHHHHHHHHcC
Q psy5227 284 KLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLN 363 (693)
Q Consensus 284 ~~~~GP~hp~~~G~~r~~l~v~Ge~I~~~~~~~g~~hRG~Ekllegr~~~~a~~l~~RIcGic~~ah~~A~~~AvE~a~g 363 (693)
.+++||+|| +|||+++.+.++||+|+++++ +||.||||||+++||++.|++.+++||||+|+++|++||++|||+|+|
T Consensus 18 ~i~igP~~r-ieG~lri~l~vd~~~V~~a~~-~g~~~RG~Ekil~gr~~~~a~~i~~RIcGiC~~aH~~A~~~AvE~a~g 95 (495)
T 2wpn_B 18 TIAIDPVTR-IEGHLKAEVVVENGKVVDARL-SGGMYRGFETILRGRDPRDASQIVQRICGVCPTAHSTASVLALDEAFG 95 (495)
T ss_dssp EEEESSCCS-SBSCEEEEEEEETTEEEEEEE-EECBCCCHHHHTTTSCGGGHHHHGGGGCSSSHHHHHHHHHHHHHHHHT
T ss_pred EEEeCCCCC-CcccEEEEEEEeCCEEEEEEE-eccccchHHHHHCCCCHHHHHHHhhhhheeCHHHHHHHHHHHHHHHhC
Confidence 589999999 999999999999999999997 999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhh--------------------------HHHHHHHHHHHHHHHHH
Q psy5227 364 IKIPIRAQYIRVMFDEITRLLNHLMWIGSHS-LDIGA--------------------------MGVLLYAFREREDLLDC 416 (693)
Q Consensus 364 ievp~ra~~lR~ll~elerI~sHl~~lg~~~-~~~g~--------------------------~~~~~~~~~~Re~~~~i 416 (693)
+++|++|+++|+|++|+|||+||++|++.++ .|++. .+.+++++++|+.++++
T Consensus 96 i~vP~~a~~iR~l~~~~eri~sHll~~~~l~~~D~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~a~~~r~~~~~i 175 (495)
T 2wpn_B 96 AKVPNNGRITRNLIFGANYLQSHILHFYHLSAQDFVQGPDTAPFVPRFPKSDLRLSKELNKAGVDQYIEALEVRRICHEM 175 (495)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTSCCCSSTTSCSCCTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccccccccccccchhhhhcChhhchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999886 55542 34799999999999999
Q ss_pred HHHHccCCccCCceeeCccccCCCCCCccchhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH--HHHhccCh
Q psy5227 417 YEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEY--ETLLTDNR 494 (693)
Q Consensus 417 ~~~~~G~r~~~~~~~pGGv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~ 494 (693)
++.++|+++|+++++||||++|++.+ .+.++.+.++++.+.++++ .+++..++
T Consensus 176 ~~~~gG~~~h~~~~~pGGv~~~l~~~-------------------------~~~~~~~~l~~~~~~~~~~~~~d~~~~~~ 230 (495)
T 2wpn_B 176 VALFGGRMPHVQGQVVGGATEIPTKE-------------------------KLVEYAARFKKVRDFVEQKYVPVVYTIGS 230 (495)
T ss_dssp HHHHHSSSSSCSSEETTEESSCCCHH-------------------------HHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHcCCCCCCCceeeCcccCCCCHH-------------------------HHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999999999999999876 4555555556555555544 33333333
Q ss_pred hhhh---cccccc-ccChhhhhhcCCcccccCCCCc-------cCCCCC---cCCccccc--------------------
Q psy5227 495 IWKQ---RLVGIG-VVSPERALSMGFTGPMLRGSGV-------KWDLRK---KQPYEIYN-------------------- 540 (693)
Q Consensus 495 ~~~~---R~~~~G-~l~~~~a~~~g~~Gp~aRasG~-------~~D~R~---~~py~~Y~-------------------- 540 (693)
.+.+ +..++| +++.+.+...+.+||.+|++|+ .+|.|+ +.||.+|+
T Consensus 231 ~~~~~~~~g~g~~~~ls~~~~~~~~~~g~~~~~~Gv~~~g~~~~~D~r~i~e~~~~~~Y~~~~~~~~p~~~~t~p~~~~~ 310 (495)
T 2wpn_B 231 KYKDMFKVGQGFKAALCVGAFPLDNSGKKHLFMPGVYAKGKDMPFDPSKIKEYVKYSWFAEETTGLNYKEGKTIPAPDKA 310 (495)
T ss_dssp TCGGGGSSCCTTCCEEECCEEECSTTSCCEEECCEEEETTEEECCCGGGEEEECTTBSBCGGGTTBCGGGCCCCBCTTCT
T ss_pred HHHHHHhhcCCCCceeehhhccccCCCCceecccceecCCceeecchhhceeecCHHHhcCCCCcCCccccccccccccc
Confidence 3333 455667 8888888778889999999999 789886 44666665
Q ss_pred ------------ccccc-----------------------------------cccCCCCChHHHHHHHHHHHHHHHHHHH
Q psy5227 541 ------------LLNFD-----------------------------------IPIGKNGDSYDRYLVRIEEMRQSNKIIK 573 (693)
Q Consensus 541 ------------~~~~~-----------------------------------~~~~~~gd~~aR~~vR~~Ei~~s~~ii~ 573 (693)
...++ +++...||+++|+++|+.|+.+|+++|+
T Consensus 311 ~~yS~~k~Pry~~~~~evGPLAR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~R~~aR~~E~~~s~~~i~ 390 (495)
T 2wpn_B 311 GAYSFVKAPRYDGLSLEVGPLARMWVNNPELSPVGKKLLKDLFGISAKKFRDLGEEAAFSLMGRHVARAEETYYMLGAIE 390 (495)
T ss_dssp TCCBSSCEEEETTBCCBCSHHHHHHHHCCBCCHHHHHHHHHHHCCCCSBGGGGCHHHHSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccceeeCCceeeccHHHHHHhhccccChHHHHHHHHHHhhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 11122 3344558999999999999999999999
Q ss_pred HHHHhcccCCCCcccCCCcccchhhhhhchhhhhhhhhhcccccccccCcceEEEEeeCCcceeEEEEEECCCCceeEEE
Q psy5227 574 QCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKPYRIK 653 (693)
Q Consensus 574 q~l~~l~~~~g~~~~~~~~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~Geg~g~vEapRG~L~h~v~~d~~g~i~r~~ 653 (693)
|++++++ .|+.....+. . ++.|+|+|++|||||+|+||+++| +|+|+||+
T Consensus 391 ~~l~~l~--~g~~~~~~~~--~-------------------------~~~geg~g~vEApRG~L~H~v~id-~g~i~~~~ 440 (495)
T 2wpn_B 391 GWLKEIK--AGEDTVVMPA--V-------------------------PASAEGTGFTEAPRGSLLHYVKVK-DSKIDNYQ 440 (495)
T ss_dssp HHHHHCC--TTCCCBCCCC--C-------------------------CSSEEEEEEEEETTEEEEEEEEEE-TTEEEEEE
T ss_pred HHHhcCC--CCCccccCCc--c-------------------------CCCceEEEEEECCCeeEEEEEEEc-CCEEEEEE
Confidence 9999998 6654322111 1 257999999999999999999998 69999999
Q ss_pred EeCCcccCHH---------HHHHHHcCCChhhH------HHHhcccccccccC
Q psy5227 654 IRSPGFAHLQ---------SLSEMISGHMISDV------VTIIGTQDIVFGEI 691 (693)
Q Consensus 654 i~~PS~~N~~---------~le~~l~G~~i~d~------~~ii~S~DpC~sc~ 691 (693)
|++||+||++ +++++|.|+.++|+ +++++|||||+||+
T Consensus 441 i~~PT~~N~~p~d~~~~~g~~e~~l~G~~v~d~~~p~~i~~iirSfDPC~~Ca 493 (495)
T 2wpn_B 441 IVSASLWNCNPRDDMGQRGAVEEALIGIPVDDIQNPVNVARLIRAFDPXLGCA 493 (495)
T ss_dssp EECHHHHHSCCCCTTCCCCHHHHHTTTCBCSCTTSCHHHHHHHHHTCCBHHHH
T ss_pred EECCchhhcCCccccchHHHHHHHhcCCChhhhccchhhhHhhhhcCCCcccc
Confidence 9999999998 99999999999998 99999999999995
No 3
>1wui_L Periplasmic [NIFE] hydrogenase large subunit; high resolution [NIFE]hydrogenase, oxidoreductase, NI-A state, unready state; HET: NFC; 1.04A {Desulfovibrio vulgaris str} SCOP: e.18.1.1 PDB: 1ubj_L 1ubh_L 1ubl_L 1ubm_L 1ubo_L 1ubr_L 1ubt_L 1ubu_L 1wuh_L* 1ubk_L* 1wuj_L 1wuk_L 1wul_L 1h2r_L 1h2a_L
Probab=100.00 E-value=4.7e-70 Score=616.25 Aligned_cols=352 Identities=17% Similarity=0.171 Sum_probs=294.6
Q ss_pred cccCcccCCCCccceEEEEEEcCCeEEEEEeeeccchhhHHHHhhCCCcCccccccccccccchhhHHHHHHHHHHHHcC
Q psy5227 284 KLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLN 363 (693)
Q Consensus 284 ~~~~GP~hp~~~G~~r~~l~v~Ge~I~~~~~~~g~~hRG~Ekllegr~~~~a~~l~~RIcGic~~ah~~A~~~AvE~a~g 363 (693)
.+++||+|+ +|||+|+++.++||+|+++++ +|++||||||+++||++.|++.+|+||||+|+++|++||++|||+|+|
T Consensus 6 ~i~i~Pvtr-ieGhlri~l~vd~~~V~~a~~-~g~~~RG~Ekil~gR~~~da~~it~RICGiC~~~H~~A~~~AvE~a~g 83 (534)
T 1wui_L 6 PIVVDPVTR-IEGHLRIEVEVENGKVKNAYS-SSTLFRGLEIILKGRDPRDAQHFTQRTCGVCTYTHALASTRCVDNAVG 83 (534)
T ss_dssp EEEESSCCS-SBSCEEEEEEEETTEEEEEEE-EECBCCCHHHHHTTSCGGGHHHHHHTTCSSSTTHHHHHHHHHHHHHHT
T ss_pred eEeeCCCCC-CccceEEEEEEcCCEEEEEEE-ccccchHHHHHHcCCCHHHHHhHhcccccccHHHHHHHHHHHHHHHhC
Confidence 589999999 999999999999999999997 999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhH------------------------------------------
Q psy5227 364 IKIPIRAQYIRVMFDEITRLLNHLMWIGSHS-LDIGAM------------------------------------------ 400 (693)
Q Consensus 364 ievp~ra~~lR~ll~elerI~sHl~~lg~~~-~~~g~~------------------------------------------ 400 (693)
++||++|++||+|++|+|||+||++|++.++ .|+...
T Consensus 84 i~vP~~A~~iR~L~~~~~~i~sHllhf~~l~~~D~~~~~~al~adp~~~~~~a~~~~~~~~~~~~~~~vq~~~~~~v~~g 163 (534)
T 1wui_L 84 VHIPKNATYIRNLVLGAQYLHDHIVHFYHLHALDFVDVTAALKADPAKAAKVASSISPRKTTAADLKAVQDKLKTFVETG 163 (534)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTCCTGGGGGCCHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhcCChHHHHHHHhhccCccCChHHHHHHHHHHHhhhhcc
Confidence 9999999999999999999999999999874 554220
Q ss_pred ----------------------------HHHHHHHHHHHHHHHHHHHHccCCccCCceeeCccccC--CCCCCccchhhh
Q psy5227 401 ----------------------------GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRD--LPEIMPQYKSSI 450 (693)
Q Consensus 401 ----------------------------~~~~~~~~~Re~~~~i~~~~~G~r~~~~~~~pGGv~~~--~~~~~~~~~~~~ 450 (693)
..+++++++|+.+++++++++|+|+|+++++||||+++ ++.+
T Consensus 164 ~l~~f~~~~~~~~~~~~~l~p~~~~~~~~~~~~al~~r~~~~~i~~~~gGk~~H~~~~~pGGv~~~~~l~~~-------- 235 (534)
T 1wui_L 164 QLGPFTNAYFLGGHPAYYLDPETNLIATAHYLEALRLQVKAARAMAVFGAKNPHTQFTVVGGVTCYDALTPQ-------- 235 (534)
T ss_dssp CCGGGTTCTTTTCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSSCCCEETTEECCGGGGSHH--------
T ss_pred ccCcccccccccCChhhcCChhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCceEECcEeCCCCCCHH--------
Confidence 15677999999999999999999999999999999999 8766
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH--HHhccChhhhhc-ccccc--ccChhhhhhc--CCcccccCC
Q psy5227 451 IRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYE--TLLTDNRIWKQR-LVGIG--VVSPERALSM--GFTGPMLRG 523 (693)
Q Consensus 451 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~R-~~~~G--~l~~~~a~~~--g~~Gp~aRa 523 (693)
.+.++++.++++.++++++. ++......+.++ ..|+| +++.+++.++ |.+||. |+
T Consensus 236 -----------------~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~G~g~~~ls~~~~~~~~~~~~g~~-~~ 297 (534)
T 1wui_L 236 -----------------RIAEFEALWKETKAFVDEVYIPDLLVVAAAYKDWTQYGGTDNFITFGEFPKDEYDLNSRF-FK 297 (534)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTGGGGGSCCCSCEEEEEEEESSTTCGGGEE-EE
T ss_pred -----------------HHHHHHHHHHHHHHHHHHhccccHHHHHHHhhhHhhcCCCCceeeHhhhcccccCCCCcc-cC
Confidence 45555555555555554432 222222333333 45666 8888777666 778988 99
Q ss_pred CCcc-----------------CCCCCc--------CCcc-----ccccccc-----------------------------
Q psy5227 524 SGVK-----------------WDLRKK--------QPYE-----IYNLLNF----------------------------- 544 (693)
Q Consensus 524 sG~~-----------------~D~R~~--------~py~-----~Y~~~~~----------------------------- 544 (693)
+|+. .|+|+. +||. .|++++|
T Consensus 298 ~Gv~~~~~~~~~~~~d~~~i~edvr~swy~~~~~~~Py~g~t~p~y~~~d~~~~ySw~K~Pry~g~~~evGPLAR~~v~~ 377 (534)
T 1wui_L 298 PGVVFKRDFKNIKPFDKMQIEEHVRHSWYEGAEARHPWKGQTQPKYTDLHGDDRYSWMKAPRYMGEPMETGPLAQVLIAY 377 (534)
T ss_dssp EEEESTTCTTSCBCCCGGGEEEECTTBTBSSSCCBCGGGCCCCBCCCCTTBTTBCBSSCEEEETTBCCBCSHHHHHHHHH
T ss_pred CCeeecCCCccccccchhheEEEeehhhhcccccCCCccCcccCCccccccccccccccceeeCCCceeccHHHHHHhhc
Confidence 9987 788876 7888 6777666
Q ss_pred ------------------ccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhccc--CCCCcccCCCcccchhhhhhchh
Q psy5227 545 ------------------DIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRS--NKGPVISNNNKITSPARINMKSN 604 (693)
Q Consensus 545 ------------------~~~~~~~gd~~aR~~vR~~Ei~~s~~ii~q~l~~l~~--~~g~~~~~~~~~~~p~~~~~~~~ 604 (693)
++|+...+|+++|+++|+.|+.+|+++|+|+++++.. ..|+.....
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~aR~~E~~~s~~~i~~~l~~l~~~i~~g~~~~~~-------------- 443 (534)
T 1wui_L 378 SQGHPKVKAVTDAVLAKLGVGPEALFSTLGRTAARGIETAVIAEYVGVMLQEYKDNIAKGDNVICA-------------- 443 (534)
T ss_dssp HTTCHHHHHHHHHHHHHHTCCGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCBC--------------
T ss_pred cccChHHHHHHHHHHhhcCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccccc--------------
Confidence 5666777999999999999999999999999998841 023221100
Q ss_pred hhhhhhhhccccccccc-CcceEEEEeeCCcceeEEEEEECCCCceeEEEEeCCcccCH---------HHHHHHHcCCCh
Q psy5227 605 MEDLIHHFKLFTEGFYV-PLGEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHL---------QSLSEMISGHMI 674 (693)
Q Consensus 605 ~~~~i~~~~~~~~~~~~-~~Geg~g~vEapRG~L~h~v~~d~~g~i~r~~i~~PS~~N~---------~~le~~l~G~~i 674 (693)
.+.+ +.|+|+|++|||||+|+||++++ +|+|+||+|++||+||+ ++++++|.|+.+
T Consensus 444 -------------~~~~~~~geG~g~vEAPRG~L~H~i~i~-~Gki~~y~ii~PT~~N~~p~d~~g~~g~~e~al~G~~v 509 (534)
T 1wui_L 444 -------------PWEMPKQAEGVGFVNAPRGGLSHWIRIE-DGKIGNFQLVVPSTWTLGPRCDKNKLSPVEASLIGTPV 509 (534)
T ss_dssp -------------CCCCCSSEEEEEEEEETTEEEEEEEEEE-TTEEEEEEEECHHHHHHCCCCTTCCCCHHHHHHTTCBC
T ss_pred -------------CCccCCCeeEEEEEEcCceeEEEEEEEC-CCEEEEEEEECCChhhcccccccchhhHHHHHhcCCch
Confidence 0112 57999999999999999999996 68999999999999999 799999999999
Q ss_pred hhH--H----HHhcccccccccC
Q psy5227 675 SDV--V----TIIGTQDIVFGEI 691 (693)
Q Consensus 675 ~d~--~----~ii~S~DpC~sc~ 691 (693)
+|+ + +++||||||++|+
T Consensus 510 ~d~~~p~~i~~iirSfDPCl~Ca 532 (534)
T 1wui_L 510 ADAKRPVEILRTVHSFDPCIACG 532 (534)
T ss_dssp SCTTSCHHHHHHHHHTCCBHHHH
T ss_pred hhccchHHHHHHHHcCCCeeeee
Confidence 987 4 9999999999995
No 4
>1yqw_Q Periplasmic [NIFE] hydrogenase large subunit; NI-Fe hydrogenase unready state, oxidoreductase; 1.83A {Desulfovibrio fructosovorans} PDB: 1yrq_H 3h3x_Q 3cus_Q 3cur_H 1frf_L
Probab=100.00 E-value=3.8e-70 Score=618.23 Aligned_cols=347 Identities=17% Similarity=0.158 Sum_probs=293.0
Q ss_pred cccCcccCCCCccceEEEEEEcCCeEEEEEeeeccchhhHHHHhhCCCcCccccccccccccchhhHHHHHHHHHHHHcC
Q psy5227 284 KLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLN 363 (693)
Q Consensus 284 ~~~~GP~hp~~~G~~r~~l~v~Ge~I~~~~~~~g~~hRG~Ekllegr~~~~a~~l~~RIcGic~~ah~~A~~~AvE~a~g 363 (693)
.+++||+|+ +|||+||++.++||+|+++++ +||+||||||+++||++.|++.+|+||||+|+++|++||++|||+|+|
T Consensus 15 ~i~i~Pvtr-ieGhlri~v~vd~~~V~~a~~-~g~~~RG~Ekil~gR~~~da~~it~RICGiC~~~H~~A~~~AvE~a~g 92 (549)
T 1yqw_Q 15 PIVVDPITR-IEGHLRIMVEVENGKVKDAWS-SSQLFRGLEIILKGRDPRDAQHFTQRACGVCTYVHALASSRCVDDAVK 92 (549)
T ss_dssp EEEECSCCS-SBSCEEEEEEEETTEEEEEEE-EECBCCCHHHHHTTSCGGGHHHHHHTTCSTTTTHHHHHHHHHHHHHHT
T ss_pred EEEECCCCC-CccceEEEEEEcCCEEEEEEE-ccccchHHHHHHcCCCHHHHHHHhcccccccHHHHHHHHHHHHHHHhC
Confidence 689999999 999999999999999999997 999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhh-------------------------------------------
Q psy5227 364 IKIPIRAQYIRVMFDEITRLLNHLMWIGSHS-LDIGA------------------------------------------- 399 (693)
Q Consensus 364 ievp~ra~~lR~ll~elerI~sHl~~lg~~~-~~~g~------------------------------------------- 399 (693)
++||++|++||+|++|+|||+||++||+.++ .|+..
T Consensus 93 i~vP~~A~~iR~L~~~~e~i~sHllhf~~l~~~D~~~~~~al~adp~~~~~~a~~~~~~~~~~~~~~~~~vq~~~~~~v~ 172 (549)
T 1yqw_Q 93 VSIPANARMMRNLVMASQYLHDHLVHFYHLHALDWVDVTAALKADPNKAAKLAASIAPARPGNSAKALKAVQDKLKAFVE 172 (549)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTCCTGGGGGSCHHHHHHHHHTTSCCCGGGSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhcCChHHHHHHHHhhcccccCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999885 45422
Q ss_pred ----H----------------H---------HHHHHHHHHHHHHHHHHHHccCCccCCceeeCccccC--CCCCCccchh
Q psy5227 400 ----M----------------G---------VLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRD--LPEIMPQYKS 448 (693)
Q Consensus 400 ----~----------------~---------~~~~~~~~Re~~~~i~~~~~G~r~~~~~~~pGGv~~~--~~~~~~~~~~ 448 (693)
. + .+++++++|+.+++++++++|+|+|+++++||||+++ ++.+
T Consensus 173 ~g~lg~f~~~~w~~~~~~~~l~p~~~~~~~~~~~~al~~r~~~~~i~~~~gGk~~H~~~~~pGGv~~~~~l~~~------ 246 (549)
T 1yqw_Q 173 SGQLGIFTNAYFLGGHKAYYLPPEVNLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGCSNYQGLTKD------ 246 (549)
T ss_dssp TTCCGGGTTCTTTTCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSSCCCEETTEECCGGGGSHH------
T ss_pred ccccCcccCCcccCCChhhcCChhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCeEECceeCCCCCCHH------
Confidence 0 1 5799999999999999999999999999999999999 8766
Q ss_pred hhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccChhhhhc------ccccc--ccChhhhhhc--CC--
Q psy5227 449 SIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQR------LVGIG--VVSPERALSM--GF-- 516 (693)
Q Consensus 449 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~R------~~~~G--~l~~~~a~~~--g~-- 516 (693)
.+.++++.++++.++++++. ..+..+..| ..|+| +++.+++..+ +.
T Consensus 247 -------------------~l~~~~~~l~~~~~~~~~~~---~~d~~~~~r~~~~~~~~G~g~~~ls~~~~~~~~~~~~~ 304 (549)
T 1yqw_Q 247 -------------------PLANYLALSKEVCQFVNECY---IPDLLAVAGFYKDWGGIGGTSNYLAFGEFATDDSSPSK 304 (549)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHTH---HHHHHHHHHHTGGGGGSSCCSCEEECCEEESCCSSHHH
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHH---hccHHHHHHhhhhhhhcCCCcceeehhhhcccccCccc
Confidence 45555555555555554432 122222233 46677 8888877766 64
Q ss_pred --cccccCCCCcc----------CCCCCc----------------CCccc-----cccccc-------------------
Q psy5227 517 --TGPMLRGSGVK----------WDLRKK----------------QPYEI-----YNLLNF------------------- 544 (693)
Q Consensus 517 --~Gp~aRasG~~----------~D~R~~----------------~py~~-----Y~~~~~------------------- 544 (693)
+|| +|++|+. +|.|+. +||.. |++++|
T Consensus 305 ~~~g~-~~~~Gv~~~~~~~~~~~~D~~~i~E~v~~swy~~~~~~~~Py~~~t~p~y~~~~~~~~ySw~KaPry~g~~~ev 383 (549)
T 1yqw_Q 305 HLATS-QFPSGVITGRDLGKVDNVDLGAIYEDVKYSWYAPGGDGKHPYDGVTDPKYTKLDDKDHYSWMKAPRYKGKAMEV 383 (549)
T ss_dssp HHHHE-EECCEEECTTCTTCCBCCCGGGEEEECTTBTBCTTCTTBCGGGCCCCBCCCCTTBTTBCBSSCEEEETTBCCBC
T ss_pred ccCCc-ccCCceeecCCCCccccccHHHceeecchhhhccCcccCCCcccccCCCccccccccccccccceeECCcceec
Confidence 588 9999987 777753 36666 666666
Q ss_pred ----------------------------ccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhccc---CCCCcccCCCcc
Q psy5227 545 ----------------------------DIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRS---NKGPVISNNNKI 593 (693)
Q Consensus 545 ----------------------------~~~~~~~gd~~aR~~vR~~Ei~~s~~ii~q~l~~l~~---~~g~~~~~~~~~ 593 (693)
++|+...||+++|+++|+.|+.+|+++|+|++++++. .++++...
T Consensus 384 GPLAR~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~aR~~E~~~s~~~i~~~l~~l~~~~~~~~~~~~~---- 459 (549)
T 1yqw_Q 384 GPLARTFIAYAKGQPDFKKVVDMVLGKLSVPATALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCAK---- 459 (549)
T ss_dssp SHHHHHHHHHHHTCHHHHHHHHHHHHHHTCCGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCBCC----
T ss_pred cHHHHHHhhhcccchHHHHHHHHHhhhcCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcccc----
Confidence 5666777999999999999999999999999999851 03332211
Q ss_pred cchhhhhhchhhhhhhhhhcccccccc-cCcceEEEEeeCCcceeEEEEEECCCCceeEEEEeCCcccCHH---------
Q psy5227 594 TSPARINMKSNMEDLIHHFKLFTEGFY-VPLGEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQ--------- 663 (693)
Q Consensus 594 ~~p~~~~~~~~~~~~i~~~~~~~~~~~-~~~Geg~g~vEapRG~L~h~v~~d~~g~i~r~~i~~PS~~N~~--------- 663 (693)
++ ++.|+|+|++|||||+|+||+++| +|+|+||+|++||+||++
T Consensus 460 -------------------------~~~~~~g~G~g~vEAPRG~L~H~i~i~-~gki~~yqiv~PT~~N~~p~d~~g~~g 513 (549)
T 1yqw_Q 460 -------------------------WEMPEESKGVGLADAPRGALSHWIRIK-GKKIDNFQLVVPATWNLGPRGAQGDKS 513 (549)
T ss_dssp -------------------------CCCCSEEEEEEEEEETTEEEEEEEEEE-TTEEEEEEEECHHHHHHCCCCTTCCCC
T ss_pred -------------------------CccCCCeeEEEEEEcCcccEEEEEEEc-CCEEEEEEEECCChhhcccccccchhh
Confidence 11 157999999999999999999998 699999999999999997
Q ss_pred HHHHHHcCCChhhHH------HHhcccccccccC
Q psy5227 664 SLSEMISGHMISDVV------TIIGTQDIVFGEI 691 (693)
Q Consensus 664 ~le~~l~G~~i~d~~------~ii~S~DpC~sc~ 691 (693)
+++++|.|+.++|+. +++||||||++|+
T Consensus 514 ~~e~al~G~~v~d~~~p~~i~~iirSfDPClsCa 547 (549)
T 1yqw_Q 514 PVEEALIGTPIADPKRPVEILRTVHAFDPCIACG 547 (549)
T ss_dssp HHHHHHTTCBCSCTTSCHHHHHHHHHTCCBHHHH
T ss_pred HHHHHhcCCchhhccchHHHHHHHHhCCCeeecc
Confidence 999999999999973 9999999999995
No 5
>1cc1_L Hydrogenase (large subunit); NI-Fe-Se hydrogenase, oxidoreductase; 2.15A {Desulfomicrobium baculatum} SCOP: e.18.1.1
Probab=100.00 E-value=1.3e-68 Score=602.74 Aligned_cols=355 Identities=17% Similarity=0.169 Sum_probs=283.0
Q ss_pred hccccccCcccCCCCccceEEEEEEcCCeEEEEEeeeccchhhHHHHhhCCCcCccccccccccccchhhHHHHHHHHHH
Q psy5227 280 IKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIE 359 (693)
Q Consensus 280 ~~~~~~~~GP~hp~~~G~~r~~l~v~Ge~I~~~~~~~g~~hRG~Ekllegr~~~~a~~l~~RIcGic~~ah~~A~~~AvE 359 (693)
++...+++||+|+ +|||+++++.++||+|+++++ +||+||||||+++||++.|++.+++||||+|+++|++||++|||
T Consensus 9 ~~~~~i~i~P~tr-ieG~lri~l~vdg~~V~~a~~-~g~~~RG~Ekil~gr~~~~a~~i~~RIcGiC~~aH~~A~~~AvE 86 (498)
T 1cc1_L 9 DGKVKISIDPLTR-VEGHLKIEVEVKDGKVVDAKC-SGGMFRGFEQILRGRDPRDSSQIVQRICGVCPTAHCTASVMAQD 86 (498)
T ss_dssp ---CEEEESSCCS-SBSCEEEEEEEETTEEEEEEE-EECBCCCHHHHTTTSCGGGHHHHGGGGCSSSHHHHHHHHHHHHH
T ss_pred CCceEEEeCCccC-CcCcEEEEEEEeCCEEEEEEE-ecCcCccHHHHhCCCCHHHHHHHhhHHHhcCHHHHHHHHHHHHH
Confidence 3567899999999 899999999999999999998 99999999999999999999999999999999999999999999
Q ss_pred HHcCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH-Hhh------------h----------------------hHHHHH
Q psy5227 360 KLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHS-LDI------------G----------------------AMGVLL 404 (693)
Q Consensus 360 ~a~gievp~ra~~lR~ll~elerI~sHl~~lg~~~-~~~------------g----------------------~~~~~~ 404 (693)
+|+|+++|++|+++|+|++|+|||+||++|++.++ .|+ + ..+.++
T Consensus 87 ~a~gi~vP~~a~~iR~l~~~~eri~sHll~~~~l~~~D~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~~~~~ 166 (498)
T 1cc1_L 87 DAFGVKVTTNGRITRNLIFGANYLQSHILHFYHLAALDYVKGPDVSPFVPRYANADLLTDRIKDGAKADATNTYGLNQYL 166 (498)
T ss_dssp HHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTSCCCSSTTSCSCCTTCCCHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccccccccccccchhHHHHhhhhhcccCchhhhhhHHHHH
Confidence 99999999999999999999999999999999886 354 1 234789
Q ss_pred HHHHHHHHHHHHHHHHccCCccCCceeeCccccCCCCCCccchhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q psy5227 405 YAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNID 484 (693)
Q Consensus 405 ~~~~~Re~~~~i~~~~~G~r~~~~~~~pGGv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 484 (693)
+++++|+.++++++.++|+++|+++++||||++|++.+ .++++++.++++.++++
T Consensus 167 ~a~~~r~~~~~i~~~~gG~~~h~~~~~pGGv~~~l~~~-------------------------~~~~~~~~l~~~~~~~~ 221 (498)
T 1cc1_L 167 KALEIRRICHEMVAMFGGRMPHVQGMVVGGATEIPTAD-------------------------KVAEYAARFKEVQKFVI 221 (498)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSCSSEETTEESSCCCHH-------------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCeecCCccCCCCHH-------------------------HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999876 45555555555555554
Q ss_pred HH--HHHhccChhhhh---------ccccccccChhhh-hhc-CCcccccCCCCccCCCCC---cCCcccccc-------
Q psy5227 485 EY--ETLLTDNRIWKQ---------RLVGIGVVSPERA-LSM-GFTGPMLRGSGVKWDLRK---KQPYEIYNL------- 541 (693)
Q Consensus 485 ~~--~~~~~~~~~~~~---------R~~~~G~l~~~~a-~~~-g~~Gp~aRasG~~~D~R~---~~py~~Y~~------- 541 (693)
++ .+++...+.+.+ |+.+.|.++.+++ ..+ +..|++.|+++.++|.++ +.+|..|+.
T Consensus 222 ~~~~~d~~~~~~~~~~~~~~g~g~~~~l~~g~~~~~~~~~~~~~~~G~~~~g~~~~~d~~~i~ed~~~~~Y~~~~~~~~~ 301 (498)
T 1cc1_L 222 EEYLPLIYTLGSVYTDLFETGIGWKNVIAFGVFPEDDDYKTFLLKPGVYIDGKDEEFDSKLVKEYVGHSFFDHSAPGGLH 301 (498)
T ss_dssp HTHHHHHHHHHHHCGGGGSSCCCCCCEEECCEEESSTTSCCEEECCEEEETTEEECCCGGGEEEECTTBTBCCSSSSCEE
T ss_pred HHHHhhHHHHHHHhhHHHhhCCCcCceeeeccccCCccccccccCCCeeecCCccccchhhceeecChhhhccccccccC
Confidence 44 222221222211 2222333322333 344 567777444433444432 223344432
Q ss_pred ----c----------------------cccc----------------------c------------cCCCCChHHHHHHH
Q psy5227 542 ----L----------------------NFDI----------------------P------------IGKNGDSYDRYLVR 561 (693)
Q Consensus 542 ----~----------------------~~~~----------------------~------------~~~~gd~~aR~~vR 561 (693)
. .|++ + +...||+++|+++|
T Consensus 302 p~~~~t~p~~~~~~~yS~~k~Pr~~g~~~evGPLAR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~R~~aR 381 (498)
T 1cc1_L 302 YSVGETNPNPDKPGAYSFVKAPRYKDKPCEVGPLARMWVQNPELSPVGQKLLKELYGIEAKKFRDLGDKAFSIMGRHVLR 381 (498)
T ss_dssp GGGCCCCBCTTCTTCCBSCCEEEETTBCCBCSHHHHHHHHCCBCCHHHHHHHHHHHCCCCSBGGGGGGGGSSHHHHHHHH
T ss_pred CccccccccccccCCcccccceeECCcceeeCHHHHHHhhhccCChHHHHHHHHHHHhhccccccccccCCCHHHHHHHH
Confidence 1 1443 2 24458999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCcccCCCcccchhhhhhchhhhhhhhhhcccccccccCcceEEEEeeCCcceeEEEE
Q psy5227 562 IEEMRQSNKIIKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYL 641 (693)
Q Consensus 562 ~~Ei~~s~~ii~q~l~~l~~~~g~~~~~~~~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~Geg~g~vEapRG~L~h~v 641 (693)
+.|+.+|+++|+|++++++ .|+.....+. . ++.|+|+|++|||||+|+||+
T Consensus 382 ~~E~~~s~~~i~~~l~~l~--~g~~~~~~~~--~-------------------------~~~geg~g~vEApRG~L~H~v 432 (498)
T 1cc1_L 382 AEETWLTAVAVEKWLKQVQ--PGAETYVKSE--I-------------------------PDAAEGTGFTEAPRGALLHYL 432 (498)
T ss_dssp HHHHHHHHHHHHHHHHHCC--TTCCCBCCCC--C-------------------------CSSEEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCC--cCCccccccC--c-------------------------CCCceEEEEEEcCCeeEEEEE
Confidence 9999999999999999998 6654322111 1 257999999999999999999
Q ss_pred EECCCCceeEEEEeCCcccCHH---------HHHHHHcCCChhhH------HHHhcccccccccC
Q psy5227 642 VSDGANKPYRIKIRSPGFAHLQ---------SLSEMISGHMISDV------VTIIGTQDIVFGEI 691 (693)
Q Consensus 642 ~~d~~g~i~r~~i~~PS~~N~~---------~le~~l~G~~i~d~------~~ii~S~DpC~sc~ 691 (693)
++| +|+|+||+|++||+||++ +++++|.|+.++|+ +++++|||||++|+
T Consensus 433 ~id-~g~i~~~~i~~PT~~N~~p~d~~~~~g~~e~~l~G~~v~d~~~p~~i~~iirSfDPC~~Ca 496 (498)
T 1cc1_L 433 KIK-DKKIENYQIVSATLWNANPRDDMGQRGPIEEALIGVPVPDIKNPVNVGRLVRSYDPXLGCA 496 (498)
T ss_dssp EEE-TTEEEEEEEEETHHHHSCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHHHHHHTCCBHHHH
T ss_pred EEc-CCEEEEEEEECCChhhccCccccchHHHHHHHhcCCChhhhcchhhhhheeeecCCCcccc
Confidence 998 699999999999999998 99999999999998 99999999999995
No 6
>1e3d_B [NIFE] hydrogenase large subunit; molecular modelling, electron transfer; HET: FSX; 1.8A {Desulfovibrio desulfuricans} SCOP: e.18.1.1
Probab=100.00 E-value=2.6e-66 Score=584.86 Aligned_cols=354 Identities=16% Similarity=0.194 Sum_probs=281.1
Q ss_pred cccCcccCCCCccceEEEEEEcCCeEEEEEeeeccchhhHHHHhhCCCcCccccccccccccchhhHHHHHHHHHHHHcC
Q psy5227 284 KLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLN 363 (693)
Q Consensus 284 ~~~~GP~hp~~~G~~r~~l~v~Ge~I~~~~~~~g~~hRG~Ekllegr~~~~a~~l~~RIcGic~~ah~~A~~~AvE~a~g 363 (693)
.+++||+|+ +|||+||++.++||+|++++. +||+||||||+++||++.|++.+|+||||+|+++|++||++|||+|+|
T Consensus 14 ~i~i~P~tr-ieG~lri~~~vd~~~V~~a~~-~g~~~RG~Ekil~gr~~~da~~~t~RICGiC~~~H~~a~~~AvE~a~g 91 (542)
T 1e3d_B 14 PIVVDPLTR-IEGHLRIEVEVEGGVIKEARS-CATLFRGIETILKGRDPRDAQHFTQRTCGVCTYTHALASTRCLEDAIN 91 (542)
T ss_dssp EEEESSCCS-SBSCEEEEEEEETTEEEEEEE-EECBCCCHHHHHTTSCGGGHHHHHHTTCSTTTTHHHHHHHHHHHHHHC
T ss_pred eEEECCCCC-cccceEEEEEEcCCEEEEEEE-ccccccHHHHHHcCCCHHHHHHHhcccccccHhHHHHHHHHHHHHHhC
Confidence 689999999 999999999999999999997 999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHH-HHhh---------------------------------------------
Q psy5227 364 IKIPIRAQYIRVMFDEITRLLNHLMWIGSH-SLDI--------------------------------------------- 397 (693)
Q Consensus 364 ievp~ra~~lR~ll~elerI~sHl~~lg~~-~~~~--------------------------------------------- 397 (693)
++||++|++||+|++|+|||+||++|++.+ +.|+
T Consensus 92 i~vP~~A~~iR~l~~~~~~i~sHl~h~~~l~~~D~~~~~~al~adp~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~g 171 (542)
T 1e3d_B 92 KPIPANATYIRNLVLGNQFMHDHLVHFYHLHALDFVDVTSALLADPAKAAKLANSISPRKATTEEFAAVQAKLKTFVASG 171 (542)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTCCTTGGGGSCHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccChHHHHHHHhhccCccCCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999996 5553
Q ss_pred --hhH-----------------------HHHHHHHHHHHHHHHHHHHHccCCccCCceeeCccccC--CCCCCccchhhh
Q psy5227 398 --GAM-----------------------GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRD--LPEIMPQYKSSI 450 (693)
Q Consensus 398 --g~~-----------------------~~~~~~~~~Re~~~~i~~~~~G~r~~~~~~~pGGv~~~--~~~~~~~~~~~~ 450 (693)
|.. ..+++++++|+.+++++++++|+++|+++++||||+++ ++.+
T Consensus 172 ~lg~~~~~~~~~~~~~~~l~pe~~~~~~~~y~~al~~r~~~~~i~~~~gGk~~H~~~~~~GGv~~~~~l~~~-------- 243 (542)
T 1e3d_B 172 QLGPFTNAYFLGGHEGYYMDPEANLVCTAHYLQALRAQVEVAKGMAVFGAKNPHTQFTVAGGVTCYEALTPE-------- 243 (542)
T ss_dssp CCGGGTTCTTTTCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSSCCCEETTEECCGGGGSHH--------
T ss_pred ccccccCcccccCchhhccChhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCceeeCcEeCCCCCCHH--------
Confidence 211 16778999999999999999999999999999999999 8766
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH--HHhcc---Chhh---h--hccccccccCh-hhhhhcC----
Q psy5227 451 IRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYE--TLLTD---NRIW---K--QRLVGIGVVSP-ERALSMG---- 515 (693)
Q Consensus 451 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~---~~~~---~--~R~~~~G~l~~-~~a~~~g---- 515 (693)
.+.++++.++++.++++++. +++.- .+.+ . .++.+.|.++. +.+.+|+
T Consensus 244 -----------------~~~~~~~~l~~~~~~~~~~~~~dl~~~~~~~~~~~~~G~~~~~l~~g~~~~~~~~~~~~~~~~ 306 (542)
T 1e3d_B 244 -----------------RIKQFRELYVKARAFIEEVYIPDLLLVASYYKDWGKIGGTNNFMAFGEFPAPGGERDLNSRWY 306 (542)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGGGSSCCSCEEEEEECCCTTCTTCGGGSSE
T ss_pred -----------------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhhcCCCcceeEEeccCccccccccccccc
Confidence 44444455555554444432 22211 1111 1 23445555443 2222323
Q ss_pred CcccccCCCCc---cCCCCC---c----------------------------CCccc-----cccccccc----------
Q psy5227 516 FTGPMLRGSGV---KWDLRK---K----------------------------QPYEI-----YNLLNFDI---------- 546 (693)
Q Consensus 516 ~~Gp~aRasG~---~~D~R~---~----------------------------~py~~-----Y~~~~~~~---------- 546 (693)
.+|++.|++|. ++|.|+ + .+|.+ |+...+++
T Consensus 307 ~~G~i~~~~~~~~~~~D~~~I~E~v~~swY~~~~~hP~~g~T~P~~~~~~~~~~YSw~K~Pry~g~~~eVGPLAR~~v~~ 386 (542)
T 1e3d_B 307 KPGVIYDRKVGSVQPFDPSKIEEHVRHSWYEGKARAPFEGETNPHFTFMGDTDKYSWNKAPRYDGHAVETGPLAQMLVAY 386 (542)
T ss_dssp EEEEECTTCGGGCBCCCGGGEEEECTTBTBCSCCBCGGGCCCCBCCCCTTCSSSCBSSCEEEETTBCCBCSHHHHHHHHH
T ss_pred CCceEEcCCCCcccccchHHceEecchhhhcCCCCCcccCcccCCccccccccccccccCcccCCCccccCHHHHHHHhh
Confidence 68999999874 677775 2 23433 33333333
Q ss_pred --------------------ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccCCCcccchhhhhhchhhh
Q psy5227 547 --------------------PIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKGPVISNNNKITSPARINMKSNME 606 (693)
Q Consensus 547 --------------------~~~~~gd~~aR~~vR~~Ei~~s~~ii~q~l~~l~~~~g~~~~~~~~~~~p~~~~~~~~~~ 606 (693)
|+...+|+++|+++|+.|+..|++++++++++++. +++. +.+...
T Consensus 387 ~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~R~~AR~~E~~~~~~~~~~~l~~l~~-~~~~--~~~~~~------------ 451 (542)
T 1e3d_B 387 GHNHKTIKPTIDAVLGKLNLGPEALFSTLGRTAARGIQTLVIAQQMENWLNEYEN-NIVK--DKQIVE------------ 451 (542)
T ss_dssp HTTCTTHHHHHHHHHHHHTCCGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTT--CCCCBC------------
T ss_pred cccChHHHHHHHHHHHhcCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccCC--CCCccc------------
Confidence 33455899999999999999999999999999872 1111 111000
Q ss_pred hhhhhhcccccccc-cCcceEEEEeeCCcceeEEEEEECCCCceeEEEEeCCcccCHH---------HHHHHHcCCChhh
Q psy5227 607 DLIHHFKLFTEGFY-VPLGEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQ---------SLSEMISGHMISD 676 (693)
Q Consensus 607 ~~i~~~~~~~~~~~-~~~Geg~g~vEapRG~L~h~v~~d~~g~i~r~~i~~PS~~N~~---------~le~~l~G~~i~d 676 (693)
.++ ++.|+|+|++|||||+|+||++++ +|+|+||+|++||+||++ ++|++|.|+.++|
T Consensus 452 -----------~~~~~~~g~GvG~~EApRG~L~H~i~i~-~GkI~~yqiv~PTtwN~~prd~~g~~g~~e~aL~G~~v~d 519 (542)
T 1e3d_B 452 -----------DYAVPTSARGVGFADVSRGGLSHWMTIE-DGKIDNFQLVVPTTWNLGPRDDKGVPSAAEAALVGTPVAD 519 (542)
T ss_dssp -----------CCCCCSSEEEEEEEEETTEEEEEEEEEE-TTEEEEEEEECHHHHHTCCCCTTCCCCHHHHHHTTCBCSC
T ss_pred -----------cccCCCCceEEEEEEcCceeEEEEEEEC-CCEEEEEEEECCChhhcCccccccchhHHHHHhcCCCccc
Confidence 011 257999999999999999999995 899999999999999998 8899999999888
Q ss_pred HH------HHhcccccccccC
Q psy5227 677 VV------TIIGTQDIVFGEI 691 (693)
Q Consensus 677 ~~------~ii~S~DpC~sc~ 691 (693)
.. +++||||||++|+
T Consensus 520 ~~~p~ei~~~irSfDPCl~Ca 540 (542)
T 1e3d_B 520 PKRPVEILRTIHSFDPCIACS 540 (542)
T ss_dssp TTSCHHHHHHHHHTCCBHHHH
T ss_pred ccchhHHHHHHHcCCCcceee
Confidence 55 8999999999995
No 7
>1yq9_H Periplasmic [NIFE] hydrogenase large subunit; oxidoreductase; 2.35A {Desulfovibrio gigas} SCOP: e.18.1.1 PDB: 2frv_L 1frv_B
Probab=100.00 E-value=1.3e-63 Score=562.66 Aligned_cols=352 Identities=17% Similarity=0.190 Sum_probs=270.3
Q ss_pred cccCcccCCCCccceEEEEEEcCCeEEEEEeeeccchhhHHHHhhCCCcCccccccccccccchhhHHHHHHHHHHHHcC
Q psy5227 284 KLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLN 363 (693)
Q Consensus 284 ~~~~GP~hp~~~G~~r~~l~v~Ge~I~~~~~~~g~~hRG~Ekllegr~~~~a~~l~~RIcGic~~ah~~A~~~AvE~a~g 363 (693)
.+++||+|+ +|||+|+++.++||+|++++. .|++||||||+++||++.|++.+++||||+|+++|++||++|+|+|+|
T Consensus 8 ~i~i~Pitr-ieGhlri~~~vd~~~V~~a~~-~g~~~RG~E~il~gr~~~da~~~~~RICGiC~~~H~~a~~~AvE~a~g 85 (536)
T 1yq9_H 8 KIVVDPITR-IEGHLRIEVEVEGGKIKNAWS-MSTLFRGLEMILKGRDPRDAQHFTQRACGVCTYVHALASVRAVDNCVG 85 (536)
T ss_dssp EEEECSCCS-SBSCEEEEEEEETTEEEEEEE-EECBCCCHHHHHTTSCGGGHHHHHHTTCSSSTTHHHHHHHHHHHHHHT
T ss_pred EEEECCCCC-CccceEEEEEEeCCEEEEEEE-cccchHHHHHHHcCCCHHHHHHHhcccccccHHHHHHHHHHHHHHHhC
Confidence 589999999 899999999999999999997 999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHH-Hhh---------------------------------------------
Q psy5227 364 IKIPIRAQYIRVMFDEITRLLNHLMWIGSHS-LDI--------------------------------------------- 397 (693)
Q Consensus 364 ievp~ra~~lR~ll~elerI~sHl~~lg~~~-~~~--------------------------------------------- 397 (693)
++||++|+++|+|++|+|||+||++|++.++ .|+
T Consensus 86 i~vP~~a~~iR~l~~~~e~i~sHl~h~~~l~~~D~~~~~~al~adp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 165 (536)
T 1yq9_H 86 VKIPENATLMRNLTMGAQYMHDHLVHFYHLHALDWVNVANALNADPAKAARLANDLSPRKTTTESLKAVQAKVKALVESG 165 (536)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTCCSGGGGGCCHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhhcccChHHHHHHHHhhccccCChHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999999999998654 464
Q ss_pred --hhH-----------------------HHHHHHHHHHHHHHHHHHHHccCCccCCceeeCccccC--CCCCCccchhhh
Q psy5227 398 --GAM-----------------------GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRD--LPEIMPQYKSSI 450 (693)
Q Consensus 398 --g~~-----------------------~~~~~~~~~Re~~~~i~~~~~G~r~~~~~~~pGGv~~~--~~~~~~~~~~~~ 450 (693)
|.. ..+++++++|+.+++++++++|+|+|+++++||||+++ ++.+
T Consensus 166 ~lg~f~~~~~~~~~~~~~l~pe~~~~~~~~~~~al~~r~~~~~~~~~~gGk~~h~~~~~~GGv~~~~~~~~~-------- 237 (536)
T 1yq9_H 166 QLGIFTNAYFLGGHPAYVLPAEVDLIATAHYLEALRVQVKAARAMAIFGAKNPHTQFTVVGGCTNYDSLRPE-------- 237 (536)
T ss_dssp CCGGGTTCTTTTCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSSCCCEETTEECCGGGGSHH--------
T ss_pred ccCcccccccccCChhhccChhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCceEECCEecCCCCCHH--------
Confidence 211 16688999999999999999999999999999999999 7766
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH--HHhccChhh------hhc--cccccccChhh--hhhcCCcc
Q psy5227 451 IRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYE--TLLTDNRIW------KQR--LVGIGVVSPER--ALSMGFTG 518 (693)
Q Consensus 451 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~------~~R--~~~~G~l~~~~--a~~~g~~G 518 (693)
.+.++...++.+.++++++. +++.-+..+ ..+ +.+.|.+.... ...+...|
T Consensus 238 -----------------~~~~~~~~l~~~~~~~~~~~~~dl~~~~~~~~~~~~~G~~~~~l~~g~~~~~~~~~~~~~~~~ 300 (536)
T 1yq9_H 238 -----------------RIAEFRKLYKEVREFIEQVYITDLLAVAGFYKNWAGIGKTSNFLTCGEFPTDEYDLNSRYTPQ 300 (536)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTGGGGGSSCCCCEEECCBCCSSTTCGGGSSBCC
T ss_pred -----------------HHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhhHHhhCCCcceEEeeccccccccccccccCC
Confidence 34444444444444443332 222111111 111 22222222210 00222345
Q ss_pred cccCC-CCc---cCCCCCc--------------------------------CCccc-----ccccccc------------
Q psy5227 519 PMLRG-SGV---KWDLRKK--------------------------------QPYEI-----YNLLNFD------------ 545 (693)
Q Consensus 519 p~aRa-sG~---~~D~R~~--------------------------------~py~~-----Y~~~~~~------------ 545 (693)
++.|. +|. ++|.++. .+|.+ |+...++
T Consensus 301 G~i~~~~~~~~~~~D~~~i~E~v~~swy~~~~~~hP~~g~T~P~~~~~~~~~~YSw~K~Pr~~g~~~evGPLAR~~v~~~ 380 (536)
T 1yq9_H 301 GVIWGNDLSKVDDFNPDLIEEHVKYSWYEGADAHHPYKGVTKPKWTEFHGEDRYSWMKAPRYKGEAFEVGPLASVLVAYA 380 (536)
T ss_dssp EEECTTCTTCCBCCCGGGEEEECTTTTBSSSCCBCGGGCCCCBCCCCTTGGGCCCSSCEEEETTBCCBCSHHHHHHHHHH
T ss_pred CeEEcCCCCcccccCHHHceEecchhhhcCCCcCCCccCccCCCcccccccCCcccccCcccCCceeeccHHHHHHhhcc
Confidence 55553 343 5666543 23322 2222233
Q ss_pred ------------------cccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhccc----CCCCcccCCCcccchhhhhhch
Q psy5227 546 ------------------IPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRS----NKGPVISNNNKITSPARINMKS 603 (693)
Q Consensus 546 ------------------~~~~~~gd~~aR~~vR~~Ei~~s~~ii~q~l~~l~~----~~g~~~~~~~~~~~p~~~~~~~ 603 (693)
+++...+|+++|+++|+.|+..+++++++++++++. .++++... +. .
T Consensus 381 ~~~~~~~~~~~~~~~~~~l~~~~~~s~~~R~~AR~~E~~~~~~~~~~~l~~l~~~i~~~~~~~~~~-~~--~-------- 449 (536)
T 1yq9_H 381 KKHEPTVKAVDLVLKTLGVGPEALFSTLGRTAARGIQCLTAAQEVEVWLDKLEANVKAGKDDLYTD-WQ--Y-------- 449 (536)
T ss_dssp TTCHHHHHHHHHHHHHHTCCGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCBCC-CC--C--------
T ss_pred cCCHHHHHHHHHHHHhcCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccC-CC--C--------
Confidence 233445899999999999999999999999998762 12332211 00 0
Q ss_pred hhhhhhhhhcccccccccCcceEEEEeeCCcceeEEEEEECCCCceeEEEEeCCcccCHH---------HHHHHHcCCCh
Q psy5227 604 NMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQ---------SLSEMISGHMI 674 (693)
Q Consensus 604 ~~~~~i~~~~~~~~~~~~~~Geg~g~vEapRG~L~h~v~~d~~g~i~r~~i~~PS~~N~~---------~le~~l~G~~i 674 (693)
+++|+|+|++|||||+|+||++++ +|+|++|+|++||+||++ ++|++|.|+++
T Consensus 450 -----------------~~~g~GvG~vEApRG~L~H~i~i~-~GkI~~yqiv~PTtwN~~prd~~g~~g~~E~aL~G~~v 511 (536)
T 1yq9_H 450 -----------------PTESQGVGFVNAPRGMLSHWIVQR-GGKIENFQLVVPSTWNLGPRCAEGKLSAVEQALIGTPI 511 (536)
T ss_dssp -----------------CSEEEEEEEEEETTEEEEEEEEEE-TTEEEEEEEECHHHHHHCCCCTTCCCCHHHHHHTTCBC
T ss_pred -----------------CCCceEEEEEEcCcccEEEEEEEc-CCEEEEEEEECCChhhccccccccchhHHHHHhcCCCc
Confidence 256999999999999999999996 799999999999999998 99999999998
Q ss_pred hhH------HHHhcccccccccC
Q psy5227 675 SDV------VTIIGTQDIVFGEI 691 (693)
Q Consensus 675 ~d~------~~ii~S~DpC~sc~ 691 (693)
+|. .+++||||||++|+
T Consensus 512 ~d~~~p~ei~~~irSfDPClaCa 534 (536)
T 1yq9_H 512 ADPKRPVEILRTVHSYDPCIACG 534 (536)
T ss_dssp SCTTSCHHHHHHHHHTCCBHHHH
T ss_pred ccccchHHHHHHHHcCCCcceee
Confidence 874 49999999999995
No 8
>3ayx_A Membrane-bound hydrogenase large subunit; oxidoreductase, membrane-bound NI-Fe hydrogenase; 1.18A {Hydrogenovibrio marinus} PDB: 3ayy_A 3ayz_A 3rgw_L
Probab=100.00 E-value=3.9e-63 Score=562.57 Aligned_cols=369 Identities=18% Similarity=0.243 Sum_probs=284.3
Q ss_pred cccCcccCCCCccceEEEEEEc-CCeEEEEEeeeccchhhHHHHhhCCCcCccccccccccccchhhHHHHHHHHHHHHc
Q psy5227 284 KLNFGPQHPAAHGVLRLILELE-GEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLL 362 (693)
Q Consensus 284 ~~~~GP~hp~~~G~~r~~l~v~-Ge~I~~~~~~~g~~hRG~Ekllegr~~~~a~~l~~RIcGic~~ah~~A~~~AvE~a~ 362 (693)
.+.+||+ +.+|||+||.+.++ ||+|++++. +||.||||||+++||++.|++++++||||+|+++|++||++|||+++
T Consensus 18 ~I~i~P~-~rieG~lr~~l~~d~ge~V~~a~~-~g~~hRG~Ek~legr~~~~a~~~~~Ricgic~~~h~~a~~~AvE~a~ 95 (596)
T 3ayx_A 18 RVVIDPV-TRIEGHMRCEVNVDENNVIQNAVS-TGTMWRGLEVILRGRDPRDAWAFVERICGVCTGCHALASVRAVEDAL 95 (596)
T ss_dssp EEEECSC-CSSBSCEEEEEEECTTSBEEEEEE-EECBCCCHHHHTTTSCGGGHHHHHHTTCSSSTTHHHHHHHHHHHHHH
T ss_pred EEEECCc-CCccccEEEEEEEeCCCeEEEEEE-CCcchhHHHHHHcCCCHHHHHHHhhhhhhccHHHHHHHHHHHHHHHh
Confidence 6899999 57899999999999 899999995 99999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH-Hhh--------------------------------------------
Q psy5227 363 NIKIPIRAQYIRVMFDEITRLLNHLMWIGSHS-LDI-------------------------------------------- 397 (693)
Q Consensus 363 gievp~ra~~lR~ll~elerI~sHl~~lg~~~-~~~-------------------------------------------- 397 (693)
|+++|++|+++|+|++|+|||+||++|++.++ .|+
T Consensus 96 gi~vP~~a~~iR~l~~e~eri~sHll~~y~L~a~D~v~~~~al~adp~~~~~~~~~~~~~~p~~~~~~~~~v~~~~~~~v 175 (596)
T 3ayx_A 96 DIKIPHNATLIREIMAKTLQIHDHIVHFYHLHALDWVNPVNALKADPQATSELQKLVSPHHPMSSPGYFKDIQIRIQKFV 175 (596)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTCCTTGGGGCCHHHHHHHHHHHCTTCSBCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhccCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998885 443
Q ss_pred -----hhH---------------------HHHHHHHHHHHHHHHHHHHHccCCccCCceeeCccccCCCCCCccchhhhh
Q psy5227 398 -----GAM---------------------GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSII 451 (693)
Q Consensus 398 -----g~~---------------------~~~~~~~~~Re~~~~i~~~~~G~r~~~~~~~pGGv~~~~~~~~~~~~~~~~ 451 (693)
|.. ..+.+++++|+.+++++++++|+.+| ++++||||++++.-+..
T Consensus 176 ~~g~lg~f~~~~wg~p~~~~~pe~~~~~~~hy~~al~~r~~~~~i~ai~GGr~pH-~~~~pGGV~~~~~~~~~------- 247 (596)
T 3ayx_A 176 DSGQLGIFKNGYWSNPAYKLSPEADLMAVTHYLEALDFQKEIVKIHAIFGGKNPH-PNYMVGGVPCAINIDGD------- 247 (596)
T ss_dssp HTTCCGGGTTCCTTCTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSCSSS-CCCBTTBCSCCBCSSST-------
T ss_pred hccccccccccccCCccccCChhhhhHHHHHHHHHHHHHHHHHHHHHHHCCCCcc-ccEeeccEecccccccc-------
Confidence 111 12677899999999999999999999 89999999999322100
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH--HHHhccChhhhhc--ccccc---ccChhhhhhc--CCcccccC
Q psy5227 452 RNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEY--ETLLTDNRIWKQR--LVGIG---VVSPERALSM--GFTGPMLR 522 (693)
Q Consensus 452 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~R--~~~~G---~l~~~~a~~~--g~~Gp~aR 522 (693)
.-+...+... .+.++...++.+.++++++ .+++..+..|.++ ..++| +++.+.+..+ +.+|+. |
T Consensus 248 --~~~~~~l~~~----~l~~~~~~l~~~~~fv~~~~~~Dl~~~~~~~~~~~~g~g~g~~~~ls~g~~~~~~~~~~g~~-~ 320 (596)
T 3ayx_A 248 --MAAGAPINME----RLNFVKSLIEQGRTFNTNVYVPDVIAIAAFYRDWLYGGGLSATNVMDYGAYPKTPYDKSTDQ-L 320 (596)
T ss_dssp --TGGGSSBCHH----HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTCCCCCGGGGTCEEECCEEESSTTCGGGEE-E
T ss_pred --ccccCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCCHhhccccccCCCCCc-c
Confidence 0000001111 3334444444444444442 3444445555555 34566 6776666555 777888 9
Q ss_pred CCCc----------cCCCC---------------------CcCCccccccccccc-------------------------
Q psy5227 523 GSGV----------KWDLR---------------------KKQPYEIYNLLNFDI------------------------- 546 (693)
Q Consensus 523 asG~----------~~D~R---------------------~~~py~~Y~~~~~~~------------------------- 546 (693)
++|+ ++|.| ..+||..|...+|+.
T Consensus 321 ~~Gvi~~g~~~~~~~~D~~~~~~I~E~v~~SwY~~~~~~~~~hP~~~~t~p~~~~~~~~~~~~~~~~~~~~~~~YSw~Ka 400 (596)
T 3ayx_A 321 PGGAIINGDWGKIHPVDPRDPEQVQEFVTHSWYKYPDETKGLHPWDGITEPNYELGSKTKGSRTNIIEIDESAKYSWIKS 400 (596)
T ss_dssp CCEEECTTCTTCCBCCCTTCTTTEEEECTTSSBCCSSTTCCBCGGGCCCCBCCCCCTTCEEETTEEEECCTTSCCCSSCE
T ss_pred CCceEEcCCCCcccccCcchhcceEEeecchhhccccccccCCCcccccccCcccccccccccccccccccccccccccc
Confidence 9998 88988 356777777766662
Q ss_pred -----------ccC--------------------------------CC-----------CChHHHHHHHHHHHHHHHHHH
Q psy5227 547 -----------PIG--------------------------------KN-----------GDSYDRYLVRIEEMRQSNKII 572 (693)
Q Consensus 547 -----------~~~--------------------------------~~-----------gd~~aR~~vR~~Ei~~s~~ii 572 (693)
|+. .. +|+++|+++|+.|+.+|++++
T Consensus 401 Pry~g~~~EVGPLAR~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~R~~AR~~E~~~~~~~~ 480 (596)
T 3ayx_A 401 PRWRGHAVEVGPLARYILAYAQGVEYVKTQVHTSLNRFNAVCRLLDPNHKDITDLKAFLGSTIGRTLARALESEYCGDMM 480 (596)
T ss_dssp EEETTBCCBCSHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCHHHHHSSHHHHHHHHHHHHHHHHHHH
T ss_pred eeECCcccchhHHHHHHHhcccCChHHHHHHHHHHHhhcccccccCcccccccccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 211 11 699999999999999999999
Q ss_pred HHHHHhccc--CCCCcccCCCcccchhhhhhchhhhhhhhhhcccccccccCcceEEEEeeCCcceeEEEEEECCCCcee
Q psy5227 573 KQCIKWLRS--NKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKPY 650 (693)
Q Consensus 573 ~q~l~~l~~--~~g~~~~~~~~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~Geg~g~vEapRG~L~h~v~~d~~g~i~ 650 (693)
+|+++++.. ..|+.....+...+| ..-+++|+|+|++|||||+|+||++++ +|+|+
T Consensus 481 ~~~l~~l~~~i~~g~~~~~~~~~~~~---------------------~~~~~~g~GvG~vEAPRG~L~H~i~i~-~GkI~ 538 (596)
T 3ayx_A 481 LDDFNQLISNIKNGDSSTANTDKWDP---------------------SSWPEHAKGVGTVAAPRGALAHWIVIE-KGKIK 538 (596)
T ss_dssp HHHHHHHHHHHHTTCCCCBCCTTCSG---------------------GGSCSEEEEEEEEEETTEEEEEEEEEE-TTEEE
T ss_pred HHHHHHHHHhccCCCcccccccccCC---------------------cCCCCCeeEEEEEECCCccEEEEEEEc-CCEEE
Confidence 999877641 023322111000000 000136889999999999999999996 69999
Q ss_pred EEEEeCCcccCHH---------HHHHHHcCCChhhH------HHHhcccccccccC
Q psy5227 651 RIKIRSPGFAHLQ---------SLSEMISGHMISDV------VTIIGTQDIVFGEI 691 (693)
Q Consensus 651 r~~i~~PS~~N~~---------~le~~l~G~~i~d~------~~ii~S~DpC~sc~ 691 (693)
||+|++||+||++ ++|++|.|+.++|. .+++||||||+||+
T Consensus 539 ~yqivvPTtwN~~Prd~~g~~g~~e~aL~G~~vad~~~p~ei~r~irSfDPClsCa 594 (596)
T 3ayx_A 539 NYQCVVPTTWNGSPRDPKGNIGAFEASLMGTPMERPDEPVEVLRTLHSFDPCLACS 594 (596)
T ss_dssp EEEEECHHHHHHCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHHHHHHTCCBHHHH
T ss_pred EEEEECCchhhcccccccchhHHHHHHhcCCccCCccchHHHHHHHHhCCcccccc
Confidence 9999999999994 99999999999874 56999999999995
No 9
>3myr_B Nickel-dependent hydrogenase large subunit; [NIFE] hydrogenase, photosynthetic P sulfur bacterium, iron-sulfur cluster, NI-A state; HET: SF4; 2.10A {Allochromatium vinosum} SCOP: e.18.1.0
Probab=100.00 E-value=8.5e-55 Score=487.76 Aligned_cols=369 Identities=19% Similarity=0.266 Sum_probs=264.1
Q ss_pred cccCcccCCCCccceEEEEEEcCCeEEEEEeeeccchhhHHHHhhCCCcCccccccccccccchhhHHHHHHHHHHHHcC
Q psy5227 284 KLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLN 363 (693)
Q Consensus 284 ~~~~GP~hp~~~G~~r~~l~v~Ge~I~~~~~~~g~~hRG~Ekllegr~~~~a~~l~~RIcGic~~ah~~A~~~AvE~a~g 363 (693)
.+.+||++. +|||+||.+.++||+|++++. +||+||||||+++||++.|++++++||||+|+++|++||++|||+|+|
T Consensus 4 ~i~i~PitR-ieG~lri~l~ldge~V~~a~~-~g~~hRG~Ekilegr~~~~a~~l~~RIcGiC~~ah~~A~~~AvE~a~G 81 (561)
T 3myr_B 4 RIVVDPITR-IEGHLRIEAQMDGATIAQAYS-SGTMVRGIETILKGRDPRDAWAFVQRICGVCTLVHGIASVRAVEDALR 81 (561)
T ss_dssp CEEECSCCS-SBSCEEEEEEEETTEEEEEEE-EECBCCCHHHHTTTSCGGGHHHHHHTTCSTTTTHHHHHHHHHHHHHHT
T ss_pred eeEeCCCCC-ccccEEEEEEEeCCEEEEEEE-ecCcchHHHHHHcCCCHHHHHHHhcccccccHhHHHHHHHHHHHHHhC
Confidence 478999997 699999999999999999995 899999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHH-HHhh---------------------------------------------
Q psy5227 364 IKIPIRAQYIRVMFDEITRLLNHLMWIGSH-SLDI--------------------------------------------- 397 (693)
Q Consensus 364 ievp~ra~~lR~ll~elerI~sHl~~lg~~-~~~~--------------------------------------------- 397 (693)
+++|++|+++|+|++|+|||+||++|++.+ +.|.
T Consensus 82 ievP~rA~~iR~l~~elerI~sHll~~~~l~a~D~~~~~~al~adp~~~~~la~~~~~~~~~~~~~~~~v~~r~~~~v~~ 161 (561)
T 3myr_B 82 IELPLNAQLIRNLMIGAQYIHDHVMHFYHLHALDWVDVVSALSADPRATSELAQSISAWPKSSPGYFADTQKRIKTFVES 161 (561)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTCCHHHHTTCCHHHHHHHHHHHCCCSBCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccCChHHHHHHHhhcccCcccChHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999843 2221
Q ss_pred ---h---------------------hHHHHHHHHHHHHHHHHHHHHHccCCccCCceeeCccccCCCCCCccchhhhhhh
Q psy5227 398 ---G---------------------AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRN 453 (693)
Q Consensus 398 ---g---------------------~~~~~~~~~~~Re~~~~i~~~~~G~r~~~~~~~pGGv~~~~~~~~~~~~~~~~~~ 453 (693)
| ..+.+..++.+|..+.+++++++|+.+|++ ++||||++.++.+.
T Consensus 162 g~lgpf~~~ywg~~~y~l~pe~nl~~~~hYleAL~~qr~~~~i~ai~GGK~PHp~-~~pGGvt~~~~~~~---------- 230 (561)
T 3myr_B 162 GQLGIFANGYWGHPAYRLPPEANLMAVAHYLEALAWQRDTAKFHAIFGGKNPHPN-FVVGGVPSPIDLDS---------- 230 (561)
T ss_dssp TCCGGGTTCCTTCTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSSSSCC-CBTTBCSCCBCTTC----------
T ss_pred cccCCccCcccCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcC-cccCceeccccccc----------
Confidence 0 014568899999999999999999999999 99999999865441
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHHH-HHHHHHHhccChhhhhccccc------cccChhhh---hhcCC-cccccC
Q psy5227 454 NKATKILNENRQGSLLDFIEDFTNRFPKN-IDEYETLLTDNRIWKQRLVGI------GVVSPERA---LSMGF-TGPMLR 522 (693)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~R~~~~------G~l~~~~a---~~~g~-~Gp~aR 522 (693)
-..++.+++...+..+.++.++++.. ++++..+....+.+..-..|. |.+..... ..+-+ .|.+..
T Consensus 231 ---~~~~~~~~l~~~~~~~~~~~~Fi~~~y~~D~~~i~~~y~~~~~~G~g~~~~ls~G~f~~~~~~~~~~~~~~~Gvi~~ 307 (561)
T 3myr_B 231 ---DSALNAKRLAEVRNLIQSMRTFVDQVYVPDTLAIAGFYKDWGERGEGLGNFLCYGDLPTGASLDPATFLFPRGAILD 307 (561)
T ss_dssp ---TTSBCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCGGGGSSSCCCCCEEECCEEESSSSCCGGGEEECCEEECT
T ss_pred ---cCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcccHHHhCCCccceeEecCCCCCCCCcccccccCCcEEEC
Confidence 01233444444666667777777666 356666655555554222221 11111000 00000 111111
Q ss_pred CC--C-ccCCCC-------------------------------------------------CcCCccc-----ccccccc
Q psy5227 523 GS--G-VKWDLR-------------------------------------------------KKQPYEI-----YNLLNFD 545 (693)
Q Consensus 523 as--G-~~~D~R-------------------------------------------------~~~py~~-----Y~~~~~~ 545 (693)
+. - .++|.+ +...|.+ |+...++
T Consensus 308 g~l~~~~~~D~~~~~~I~E~v~hSwY~~~~g~~~~~hP~~g~T~P~~~~~~~~~~~~~~~~~~~kYSW~KaPRy~g~~~E 387 (561)
T 3myr_B 308 RDLSTIHEVDLEATGEIQEFVNHSWYEYSVGNDRGLHPYEGQTNLEYDRRGGVAPPYKQLDVSDGYSWLKAPRWKGRSVE 387 (561)
T ss_dssp TCTTCCBCCCSSCTTTEEEECTTSSBCCTTCTTSCBCGGGCCCCBCSTTTTCCCSSCSSCCTTSCCCSSCEEEETTBCCB
T ss_pred CeeceeeccCCCCCcceEEecCccccccccCCCCCCCCCCCcccCCcccCCCCCcchhhcCccCCcceeecceECCcccc
Confidence 10 0 012211 0111111 2222222
Q ss_pred c------------------------------ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhccc--CCCCcccCCCcc
Q psy5227 546 I------------------------------PIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRS--NKGPVISNNNKI 593 (693)
Q Consensus 546 ~------------------------------~~~~~gd~~aR~~vR~~Ei~~s~~ii~q~l~~l~~--~~g~~~~~~~~~ 593 (693)
+ |...-.++++|+++|+.|+..++..+.+++++|.. ..|+........
T Consensus 388 vGPLAR~~v~~~~g~~~~~~~v~~~l~~~g~~~~~l~stlgR~~AR~~E~~~~a~~~~~~l~~l~~~i~~gd~~~~~~~~ 467 (561)
T 3myr_B 388 VGPLARVLMLYATGHDQARELVDSTLSRLDLPVDALYSTLGRTAARALESKILVDAMQGWYDGLIANVKSGDTKTFNETL 467 (561)
T ss_dssp CSHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCBCCTT
T ss_pred ccHHHHHHHhhccCChhHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccc
Confidence 1 00001268999999999999998888877776521 034332211000
Q ss_pred cchhhhhhchhhhhhhhhhcccccccc-cCcceEEEEeeCCcceeEEEEEECCCCceeEEEEeCCcccCHH---------
Q psy5227 594 TSPARINMKSNMEDLIHHFKLFTEGFY-VPLGEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQ--------- 663 (693)
Q Consensus 594 ~~p~~~~~~~~~~~~i~~~~~~~~~~~-~~~Geg~g~vEapRG~L~h~v~~d~~g~i~r~~i~~PS~~N~~--------- 663 (693)
-.| .. +.+++|+|++|||||.|+||++++ +|+|.+|+|++||+||.+
T Consensus 468 ~~~----------------------~~~p~~~~GvG~~EApRGaL~Hwi~I~-dGkI~nYQ~VvPTTWN~sPRD~~G~~G 524 (561)
T 3myr_B 468 WEP----------------------SSWPSRAQGVGIMEAPRGALGHWIVIE-DGRIANYQAVVPSTWNAGPRDGRGQAG 524 (561)
T ss_dssp CSG----------------------GGSCSEEEEEEEEEETTEEEEEEEEEE-TTEEEEEEEECHHHHHHCCCCTTCCCC
T ss_pred cCC----------------------CCCCCceeEEEEEEecCccceeEEEEe-CCEEeEEEEECCCcCcCCCCCCCCCcC
Confidence 000 11 246899999999999999999998 599999999999999994
Q ss_pred HHHHHHc-CCChhh------HHHHhcccccccccC
Q psy5227 664 SLSEMIS-GHMISD------VVTIIGTQDIVFGEI 691 (693)
Q Consensus 664 ~le~~l~-G~~i~d------~~~ii~S~DpC~sc~ 691 (693)
++|++|. |++++| +.++|||||||++|+
T Consensus 525 p~E~aLi~gtpv~d~~~Plei~r~irSFDPClaCa 559 (561)
T 3myr_B 525 AYEAALQDNHQLVDVKQPIEILRTIHSFDPCIACA 559 (561)
T ss_dssp HHHHHHHSSCBCSCTTSCHHHHHHHHHTCCBHHHH
T ss_pred HHHHHHhCCCCCCCCCchHhHHHHHHhcCCccccc
Confidence 7999999 999987 678999999999995
No 10
>3uqy_L Hydrogenase-1 large chain; membrane-bound hydrogenase, oxidoreductase; HET: LMT; 1.47A {Escherichia coli} PDB: 3usc_L* 3use_L*
Probab=100.00 E-value=1e-54 Score=486.68 Aligned_cols=374 Identities=16% Similarity=0.199 Sum_probs=265.4
Q ss_pred ccccCcccCCCCccceEEEEEEcCCeEEEEEeeeccchhhHHHHhhCCCcCccccccccccccchhhHHHHHHHHHHHHc
Q psy5227 283 YKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLL 362 (693)
Q Consensus 283 ~~~~~GP~hp~~~G~~r~~l~v~Ge~I~~~~~~~g~~hRG~Ekllegr~~~~a~~l~~RIcGic~~ah~~A~~~AvE~a~ 362 (693)
-.+.+||+|. +|||+||.+.++||.|++.++.+||+||||||+++||++.|++++++||||+|+++|++||++|||+++
T Consensus 17 ~~i~V~Pvtr-ieG~lrl~l~ldgE~vV~~a~~~G~~hRG~Ekilegr~~~da~~~t~RIcGic~~ah~~A~~~AvE~a~ 95 (582)
T 3uqy_L 17 RRLVVDPITR-IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDAI 95 (582)
T ss_dssp EEEEECSCCS-SBSCEEEEEEECTTSBEEEEEEEECBCCCHHHHTTTSCGGGHHHHHHTTCSSSTTHHHHHHHHHHHHHH
T ss_pred ceEEECCCCc-eeeeEEEEEEEcCCcEEEEEEcCCccchHHHHHHcCCCHHHHHHHhchhhhccHHHHHHHHHHHHHHHh
Confidence 3589999996 799999999999987777778999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hh-h------------------------------------------
Q psy5227 363 NIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSL-DI-G------------------------------------------ 398 (693)
Q Consensus 363 gievp~ra~~lR~ll~elerI~sHl~~lg~~~~-~~-g------------------------------------------ 398 (693)
|++||++|++||+|++|+|||+||++|++.++. |. +
T Consensus 96 GievP~rA~~iR~l~~elerI~sHll~~~~L~~pD~~~~~~a~~adP~~~~~la~~~s~~p~~~~~~~~~v~~r~~~~v~ 175 (582)
T 3uqy_L 96 GIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVE 175 (582)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGTSCTGGGGGCCHHHHHHHHHHHCCCSBCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccCChHHHHHHHhhcccCccCChHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999987752 21 0
Q ss_pred --------------------------hHHHHHHHHHHHHHHHHHHHHHccCCccCCceeeCccccCCCCCCccchhhhhh
Q psy5227 399 --------------------------AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIR 452 (693)
Q Consensus 399 --------------------------~~~~~~~~~~~Re~~~~i~~~~~G~r~~~~~~~pGGv~~~~~~~~~~~~~~~~~ 452 (693)
..+.+..++.++..+.+++++++|+.+|++ .+||||++.++.+...
T Consensus 176 ~g~lgpF~~~ywgh~~y~l~pe~nl~~~~hYleAL~~qr~~~e~~aifGGK~PHps-~~vGGvt~~~~~~~~~------- 247 (582)
T 3uqy_L 176 GGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPN-WIVGGMPCAINIDESG------- 247 (582)
T ss_dssp TSCCGGGTTCCTTCTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSSSSCC-CBTTBCSCCBCSSSTT-------
T ss_pred ccccCCcCCcccCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCC-cccCcccccccccccc-------
Confidence 024578899999999999999999999996 5999999987554100
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHHHHH-HHHHHHHhccChhhhhccccc--------cccChhhh----hh-cCCcc
Q psy5227 453 NNKATKILNENRQGSLLDFIEDFTNRFPKN-IDEYETLLTDNRIWKQRLVGI--------GVVSPERA----LS-MGFTG 518 (693)
Q Consensus 453 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~R~~~~--------G~l~~~~a----~~-~g~~G 518 (693)
+...++.+++......+.++.++++.. ++++..+....+.|.....|. |.+..... .. +--.|
T Consensus 248 ---~~~~~~~~rl~~~~~~~~~~~~Fv~~~y~pD~~~i~~~y~~~~~~G~g~~~~n~ls~G~fp~~~~~~~~~~~~~~~G 324 (582)
T 3uqy_L 248 ---AVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGG 324 (582)
T ss_dssp ---GGGSBCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGGGSCCGGGGTCEEECCEEESSTTCCSTTTEEECCE
T ss_pred ---cccCCCHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhccHHHhCCCCCCCCeEEecCCcCCCccccccccccCCe
Confidence 011133344444666666666666665 456655544444444322221 21211110 00 10112
Q ss_pred cccCCC--C-ccCCCC---------------------CcCCccc----------------------------------cc
Q psy5227 519 PMLRGS--G-VKWDLR---------------------KKQPYEI----------------------------------YN 540 (693)
Q Consensus 519 p~aRas--G-~~~D~R---------------------~~~py~~----------------------------------Y~ 540 (693)
.+..+. . .++|.. ..+||.. |+
T Consensus 325 vi~~g~l~~~~~~D~~~~~~I~E~v~hSwY~y~~~~~~~hP~~g~T~P~~~~~~~~~~~~~~~~~d~~~kYSW~KaPRy~ 404 (582)
T 3uqy_L 325 AVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWR 404 (582)
T ss_dssp EECTTCTTCCBCCCSSCTTTEEEECTTSSBCCSCTTSCBCGGGCCCCBCCCCCSCEEETTEEEECCTTSCCCSSCEEEET
T ss_pred EEECCccccccccCCCCccCeeecccccccccCCCCCCCCCCCCcCCCCCcccccCCCCCcccccCCcCCcccccCcccC
Confidence 211110 0 122321 0112111 11
Q ss_pred cccccc------------------------------ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhccc--CCCCccc
Q psy5227 541 LLNFDI------------------------------PIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRS--NKGPVIS 588 (693)
Q Consensus 541 ~~~~~~------------------------------~~~~~gd~~aR~~vR~~Ei~~s~~ii~q~l~~l~~--~~g~~~~ 588 (693)
...+++ +.....++++|+++|+.|....+..+.+++++|.. ..|....
T Consensus 405 g~~~EvGPLAR~lv~ya~g~~~~~~~v~~~l~~~g~~~~~~~StlgR~~AR~~E~~~~a~~~~~~~~~l~~ni~~gd~~t 484 (582)
T 3uqy_L 405 GNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLAT 484 (582)
T ss_dssp TBCCBCSHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CcccccCHHHHHHHhhccCchHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc
Confidence 111111 00111478999999999999888777777765531 0343221
Q ss_pred -CCCcccchhhhhhchhhhhhhhhhcccccccccCcceEEEEeeCCcceeEEEEEECCCCceeEEEEeCCcccCH-----
Q psy5227 589 -NNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHL----- 662 (693)
Q Consensus 589 -~~~~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~Geg~g~vEapRG~L~h~v~~d~~g~i~r~~i~~PS~~N~----- 662 (693)
+.....++ ..+.+|+|+|++|||||.|+||++++ +|+|.+|+|++||+||+
T Consensus 485 ~~~~~~~~~----------------------~~p~e~~G~G~~EApRGaL~Hwi~I~-~gkI~nYQ~v~PTtWN~sPRD~ 541 (582)
T 3uqy_L 485 ASTEKWEPA----------------------TWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASPRDP 541 (582)
T ss_dssp BCCTTCSGG----------------------GSCSEEEEEEEEEETTEEEEEEEEEE-TTEEEEEEEECHHHHHTCCCCT
T ss_pred ccccccCCC----------------------CCCCCceEEEEEecCCcccceeEEEe-CCEeceeEEECCCCCcCCCCCC
Confidence 00000000 01246899999999999999999998 79999999999999998
Q ss_pred ----HHHHHHHcCCChhh------HHHHhcccccccccC
Q psy5227 663 ----QSLSEMISGHMISD------VVTIIGTQDIVFGEI 691 (693)
Q Consensus 663 ----~~le~~l~G~~i~d------~~~ii~S~DpC~sc~ 691 (693)
+++|++|.|++++| +.++|||||||++|+
T Consensus 542 ~G~~Gp~E~ALigtpv~d~~~Plei~R~irSFDPClaCa 580 (582)
T 3uqy_L 542 KGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACS 580 (582)
T ss_dssp TCCCCHHHHHHTTCBCSSTTSCHHHHHHHHHTCCBHHHH
T ss_pred CCCCCHHHHHhcCCCCCCCcchHHHHHHHHhcCCccccc
Confidence 48999999999987 678999999999995
No 11
>3i9v_6 NADH-quinone oxidoreductase subunit 6; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_6* 2fug_6* 3iam_6* 3ias_6* 3m9s_6*
Probab=100.00 E-value=2.9e-40 Score=315.69 Aligned_cols=144 Identities=56% Similarity=1.074 Sum_probs=121.1
Q ss_pred cCCCCcc-cccccccccccccccCCCCCchHHHHHhhcCCccccccccc-eeccCCCCccEEEEccccCCCcHHHHHHHH
Q psy5227 20 CGFKEFG-DKLINWTRTSSMWPMTFGLACCAIEMMHAGASRYDLDRFGI-MFRPSPRQSDVMIVAGTLCNKMAPALRKVY 97 (693)
Q Consensus 20 CGf~p~~-~~rir~~r~~~lw~~~~~c~gc~~e~l~~~~~~~d~~~~~~-~~~~~p~~~Dil~veG~v~~~~~~~~~~~~ 97 (693)
-||.... +...+|.|++|+|+++|+|+||++||+++..|.||+++||+ .++++|+|+|+++|||+|+++|.+.+++++
T Consensus 17 ~~~~~~~~~~l~~w~R~~slW~~~~gc~cC~iEll~~~~p~yDl~rfGi~~~~aSPrqaDiliVeG~Vt~~m~~~l~~~~ 96 (181)
T 3i9v_6 17 EGILFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDARNDLARFGSEVFRASPRQADVMIVAGRLSKKMAPVMRRVW 96 (181)
T ss_dssp TSHHHHHHHHHHHHHHTTSCCCEEEECSTHHHHHTTTTTTC----------------CCCCEEEESCCBTTTHHHHHHHH
T ss_pred CCchHHHHHHHHhhcccCCcccccCCCCchHHHHHHhhhchhhHHHcCcccccCCCCCceEEEEeccCCcccHHHHHHHH
Confidence 3454333 66889999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHcCCCceEEeecccCCCCCcCCcCCccccCcceeeecceeccCCCCChhhhHHHHHHHHHHHhhhc
Q psy5227 98 DQMTEPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYIPGCPPTAEALLYDYYSTMKILRDHV 164 (693)
Q Consensus 98 ~~~~~~~~vva~G~CA~~GGi~~~~~~~~~~~~~~v~vd~~ipGCPp~p~~i~~~l~~ll~~Lr~~~ 164 (693)
++|++||+|||+|+||++||+| ++|+..+|+++++|||+|||||||+|++|+++|+++++.++++.
T Consensus 97 e~~p~pk~VIAvGsCA~~GGi~-~~y~~~~gvd~iipVDv~IPGCPP~Pe~il~~l~~l~~ki~~~~ 162 (181)
T 3i9v_6 97 EQMPDPKWVISMGACASSGGMF-NNYAIVQNVDSVVPVDVYVPGCPPRPEALIYAVMQLQKKVRGQA 162 (181)
T ss_dssp HSSCSSCCEEEEHHHHHSCTTC-CSTTBCSCGGGTSCCSEEECCSSCCHHHHHHHHHHHHHHHTTCC
T ss_pred HHcCCCceEEEeecccccCCCC-CCCcccCCcccCCCccEEeeCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999 89999999999999999999999999999999999999998653
No 12
>3i9v_5 NADH-quinone oxidoreductase subunit 5; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_5* 2fug_5* 3iam_5* 3ias_5* 3m9s_5*
Probab=100.00 E-value=3e-39 Score=318.93 Aligned_cols=164 Identities=35% Similarity=0.527 Sum_probs=140.3
Q ss_pred ChhhhHHHHHHHHHHHhhhcccccccccccccccccccccccCCCCCCCCCcEEEEEEeeccc-----cCeEEEEEEeec
Q psy5227 145 TAEALLYDYYSTMKILRDHVNFRFEQLIDLCGIDYSIYNKNINSDNSNKNLRFAIVLHLLSLN-----YNWRLRVRVFAE 219 (693)
Q Consensus 145 ~p~~i~~~l~~ll~~Lr~~~~~~fd~L~~~~~vd~~~~~~~~~~~~~~~~~~~~~vyh~~~~~-----~~~~l~v~v~~~ 219 (693)
.++.+. .++++|++ .+|++|.++||+||..+.. ..+++|+++|||.|+. .+.+++++|.++
T Consensus 30 ~~e~l~----~v~~~Lk~---~gf~~L~~l~gvD~~~~~~-------~~~~~f~vvYhl~s~~~~~~~~~~~v~vkv~v~ 95 (207)
T 3i9v_5 30 PRERFK----EEMAHYKA---MGFNFLADIVGLDYLTYPD-------PRPERFAVVYELVSLPGWKDGDGSRFFVRVYVP 95 (207)
T ss_dssp CHHHHH----HHHHHHHH---TTCCCEEEEEEEECTTCSS-------CCSSSEEEEEEECCCTTSSSCCCCCEEEEEEEC
T ss_pred cHHHHH----HHHHHHHH---CCCCeEEEEEeEECCccCC-------CCCCeEEEEEEEeeccccccCCCcEEEEEEEec
Confidence 455444 55777775 5799999999999963321 1357899999999987 778899999998
Q ss_pred CCCCCCcCcccccccccchhhhhhccccCceecCCCCCccccccCCCCCCCCCCCCcchhhccccccCcccCCCCccceE
Q psy5227 220 NNELPRLHSITSLWSSANWYEREAFDLFGIFFDGHDDLRRLLTDYGFVGHPFRKDFPVIEIKSYKLNFGPQHPAAHGVLR 299 (693)
Q Consensus 220 ~~~~~~~~s~~~~~~~a~~~Ere~~d~~Gi~~~g~pd~r~~~~~~~~~~~plrk~~~~~~~~~~~~~~GP~hp~~~G~~r 299 (693)
+ ++|++|||+++||+|+|+|||+||||||.|+||||+||||+|++|.+||||||||..+ .++++.|++++++++
T Consensus 96 ~-~~p~vPSit~i~p~A~w~ERE~~DmfGI~F~GhPdlRRiLl~~~w~ghPLRKDfpl~~-----~p~~~~~agiiEPgh 169 (207)
T 3i9v_5 96 E-EDPRLPTVTDLWGSANFLEREVYDLFGIVFEGHPDLRKILTPEDLEGHPLRKDYPLGE-----TPTLFREGRYIIPAE 169 (207)
T ss_dssp S-SCCBCCCCTTTCSTHHHHHHHHHHTSCCBCTTCSCCCCCSSCTTCCSCTTSTTSCCCC-----CCEECTTSCEECGGG
T ss_pred C-CCCcCCchhhhhcccChhHhhhhhhcCcEeCCCCCCccccCCCCCCCCCCCCCCCCcC-----CCCcCcccccccCcc
Confidence 7 6899999999999999999999999999999999999999999999999999999754 367778999966666
Q ss_pred EEEEEcCCeEEEEEeeeccchhhHHHHhhC
Q psy5227 300 LILELEGEVVRKADPHIGLLHRATEKLAEQ 329 (693)
Q Consensus 300 ~~l~v~Ge~I~~~~~~~g~~hRG~Eklleg 329 (693)
|++.+.||+|.++++++|| |||+|++++-
T Consensus 170 Frf~~~GE~i~~le~Rlgy-hkG~~~~~~~ 198 (207)
T 3i9v_5 170 FRAALTGKDPGLTFYKGGS-RKGYRSLWAD 198 (207)
T ss_dssp TCCSCCSSCCCSSSCCCGG-GSCCCCCC--
T ss_pred EEEEEcCccEEEeEEeccc-hHhHHHHHHH
Confidence 6668899999999999999 9999999875
No 13
>1yq9_A Periplasmic [NIFE] hydrogenase small subunit; oxidoreductase; 2.35A {Desulfovibrio gigas} SCOP: e.19.1.1 PDB: 2frv_S 1frv_A
Probab=99.95 E-value=1.7e-29 Score=258.70 Aligned_cols=128 Identities=17% Similarity=0.257 Sum_probs=117.8
Q ss_pred cccccccccCCCCCchHHHHHhhcCCccc---cccccceeccCC----------------CCccEEEEccccCCCcH---
Q psy5227 33 TRTSSMWPMTFGLACCAIEMMHAGASRYD---LDRFGIMFRPSP----------------RQSDVMIVAGTLCNKMA--- 90 (693)
Q Consensus 33 ~r~~~lw~~~~~c~gc~~e~l~~~~~~~d---~~~~~~~~~~~p----------------~~~Dil~veG~v~~~~~--- 90 (693)
.+.+++|++.++|+||++||+++..|.+| ++++++.+++++ +++|||+|||+|++++.
T Consensus 5 ~~~~v~wl~~~~C~GC~isll~~~~p~~~~ll~~~i~i~~~~s~~~~~g~~a~~~~~~~~~~~diliVeGsV~~~~~g~~ 84 (264)
T 1yq9_A 5 KRPSVVYLHNAECTGCSESVLRTVDPYVDELILDVISMDYHETLMAGAGHAVEEALHEAIKGDFVCVIEGGIPMGDGGYW 84 (264)
T ss_dssp CSCEEEEEECBCCSHHHHHHHTCTTTTHHHHHHHTCEEEECTTTCSSCTHHHHHHHHHHTTSSEEEEEESBEECGGGSTT
T ss_pred CCCcEEEEeCCccCchHHHHHhcCCcCHHHHHhhheeeEecCChhhhcchhHHHHHhhhccCCeEEEEeCCcccCCCcce
Confidence 36789999999999999999999999888 489999999998 89999999999999984
Q ss_pred ------HHHHHHHHHcCCCceEEeecccCCCCCcCCc--CCccccCcceeee----cceeccCCCCChhhhHHHHHHHHH
Q psy5227 91 ------PALRKVYDQMTEPKWVISMGSCANGGGYYHY--SYSVVRGCDRIVP----VDVYIPGCPPTAEALLYDYYSTMK 158 (693)
Q Consensus 91 ------~~~~~~~~~~~~~~~vva~G~CA~~GGi~~~--~~~~~~~~~~~v~----vd~~ipGCPp~p~~i~~~l~~ll~ 158 (693)
+.+++++++|++||+|||+||||++||||+. +|+...|++++++ +|+|||||||+|++|+++|.++++
T Consensus 85 ~~~~~~~~~~~l~~~~~~~k~VIA~GsCA~~GGi~a~~~n~~~~~gv~~~l~~~~~~di~IPGCPP~Pe~i~~~l~~ll~ 164 (264)
T 1yq9_A 85 GKVGGRNMYDICAEVAPKAKAVIAIGTCATYGGVQAAKPNPTGTVGVNEALGKLGVKAINIAGCPPNPMNFVGTVVHLLT 164 (264)
T ss_dssp BEETTEEHHHHHHHHGGGSSEEEEEHHHHHHCCGGGSTTCTTCEECHHHHHGGGTCCCEEECSSSCCHHHHHHHHHHHHH
T ss_pred eecCcHHHHHHHHHHhccCCEEEEeccccccCCCCCCCCCCccccChhHhccCCCCeEEEEECCCCCHHHHHHHHHHHHh
Confidence 7889999999999999999999999999976 6677789999998 899999999999999999998887
Q ss_pred HH
Q psy5227 159 IL 160 (693)
Q Consensus 159 ~L 160 (693)
..
T Consensus 165 ~~ 166 (264)
T 1yq9_A 165 KG 166 (264)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 14
>1wui_S Periplasmic [NIFE] hydrogenase small subunit; high resolution [NIFE]hydrogenase, oxidoreductase, NI-A state, unready state; HET: NFC; 1.04A {Desulfovibrio vulgaris str} SCOP: e.19.1.1 PDB: 1h2r_S 1ubj_S 1ubh_S 1ubl_S 1ubm_S 1ubo_S 1ubr_S 1ubt_S 1ubu_S 1wuh_S* 1ubk_S* 1wuj_S 1wuk_S 1wul_S 1e3d_A*
Probab=99.95 E-value=1.5e-29 Score=259.76 Aligned_cols=127 Identities=22% Similarity=0.334 Sum_probs=113.5
Q ss_pred cccccccccCCCCCchHHHHHhhcCCccc---cccccceec-------------------cCCCCccEEEEccccCCCcH
Q psy5227 33 TRTSSMWPMTFGLACCAIEMMHAGASRYD---LDRFGIMFR-------------------PSPRQSDVMIVAGTLCNKMA 90 (693)
Q Consensus 33 ~r~~~lw~~~~~c~gc~~e~l~~~~~~~d---~~~~~~~~~-------------------~~p~~~Dil~veG~v~~~~~ 90 (693)
.+..++|++.++|+||++||+++..|.+| ++.+++.|+ .+|++ |||+|||+|++++.
T Consensus 5 ~r~~v~wl~~~~C~GC~isll~~~~p~~d~lll~~i~l~y~~~l~~~~g~~~e~~~~~~~~~p~~-Dil~VeG~V~~~~~ 83 (267)
T 1wui_S 5 RRPSVVYLHNAECTGCSESVLRAFEPYIDTLILDTLSLDYHETIMAAAGDAAEAALEQAVNSPHG-FIAVVEGGIPTAAN 83 (267)
T ss_dssp SSCEEEEEECBCCSHHHHHHHTCTTTTHHHHHHTTCEEEECTTTCSCCHHHHHHHHHHHHTCTTC-EEEEEESBEECGGG
T ss_pred CCccEEEEecCccCcHHHHHHhcCCCCHHHHHhhheeeeecchhhhhhhHHHHHHHHHHhcCCCC-eEEEEeCCCccCCC
Confidence 46789999999999999999999999888 555555554 46899 99999999999997
Q ss_pred ---------HHHHHHHHHcCCCceEEeecccCCCCCcCCcCCc--cccCcceeee---c-ceeccCCCCChhhhHHHHHH
Q psy5227 91 ---------PALRKVYDQMTEPKWVISMGSCANGGGYYHYSYS--VVRGCDRIVP---V-DVYIPGCPPTAEALLYDYYS 155 (693)
Q Consensus 91 ---------~~~~~~~~~~~~~~~vva~G~CA~~GGi~~~~~~--~~~~~~~~v~---v-d~~ipGCPp~p~~i~~~l~~ 155 (693)
+.+++++++|++||+|||+||||++||||+.+|+ .+.|++++++ | |+|||||||+|++|+++|.+
T Consensus 84 g~~~~~~g~~~l~~~~e~~~~ak~VIAvGsCA~~GGi~a~~~n~t~~~gv~~vv~~~~vpdi~IPGCPP~Pe~i~~~l~~ 163 (267)
T 1wui_S 84 GIYGKVANHTMLDICSRILPKAQAVIAYGTCATFGGVQAAKPNPTGAKGVNDALKHLGVKAINIAGCPPNPYNLVGTIVY 163 (267)
T ss_dssp GTTBEETTEEHHHHHHHHGGGSSEEEEESHHHHHCCGGGSTTCTTCEECHHHHHGGGTCCCEEECSSSCCHHHHHHHHHH
T ss_pred cceeecCChHHHHHHHHHhccCCEEEEeeeccccCCCCCCcCCCcCCCCHHHhcCcCCceEEEEeCCCCCHHHHHHHHHH
Confidence 8899999999999999999999999999988666 5689999999 7 99999999999999999998
Q ss_pred HHHHH
Q psy5227 156 TMKIL 160 (693)
Q Consensus 156 ll~~L 160 (693)
++.+-
T Consensus 164 ll~~g 168 (267)
T 1wui_S 164 YLKNK 168 (267)
T ss_dssp HHHHS
T ss_pred HHHcC
Confidence 77543
No 15
>1h2a_S Hydrogenase; SO ligand, hydrogen metabolism, Mg center, MIR, MAD, oxidoreductase; 1.80A {Desulfovibrio vulgaris str} SCOP: e.19.1.1
Probab=99.95 E-value=3.8e-29 Score=261.59 Aligned_cols=126 Identities=22% Similarity=0.338 Sum_probs=114.8
Q ss_pred ccccccccccCCCCCchHHHHHhhcCCccc---cccccceecc-------------------CCCCccEEEEccccCCCc
Q psy5227 32 WTRTSSMWPMTFGLACCAIEMMHAGASRYD---LDRFGIMFRP-------------------SPRQSDVMIVAGTLCNKM 89 (693)
Q Consensus 32 ~~r~~~lw~~~~~c~gc~~e~l~~~~~~~d---~~~~~~~~~~-------------------~p~~~Dil~veG~v~~~~ 89 (693)
..+..++|++.++|+||++||+++..|.+| ++.+++.|++ +|++ |||+|||+|++++
T Consensus 54 ~~r~~v~Wl~~~~C~GC~is~l~~~~p~~d~lll~~i~l~y~~~lm~~~G~~ae~~~~~~~~~pr~-DIliVeGsV~~~~ 132 (317)
T 1h2a_S 54 PRRPSVVYLHNAECTGCSESVLRAFEPYIDTLILDTLSLDYHETIMAAAGDAAEAALEQAVNSPHG-FIAVVEGGIPTAA 132 (317)
T ss_dssp SSSCEEEEEECBCCSHHHHHHTTCTTTTHHHHHHTTCEEEECTTTCSCCHHHHHHHHHHHHSCTTC-CEEEEESBEECGG
T ss_pred CCCCeEEEeeCCccCcHHHHHHhcCCCCHHHHHhhceeeeecchhhhhchhHHHHHHHHHhcCCCC-eEEEEeCCCcCCC
Confidence 457899999999999999999999999998 5777777766 6889 9999999999999
Q ss_pred ---------HHHHHHHHHHcCCCceEEeecccCCCCCcCCcC--CccccCcceeee---c-ceeccCCCCChhhhHHHHH
Q psy5227 90 ---------APALRKVYDQMTEPKWVISMGSCANGGGYYHYS--YSVVRGCDRIVP---V-DVYIPGCPPTAEALLYDYY 154 (693)
Q Consensus 90 ---------~~~~~~~~~~~~~~~~vva~G~CA~~GGi~~~~--~~~~~~~~~~v~---v-d~~ipGCPp~p~~i~~~l~ 154 (693)
.+.+++++++|++||+|||+||||++||||+.. ++.+.|++++|+ | |+|||||||+|++|+++|.
T Consensus 133 ~g~~~~~~g~~~l~~l~e~~~~ak~VIAvGsCA~~GGi~a~~~npt~~~gv~~vvp~~~vpdi~IPGCPP~Pe~i~~~l~ 212 (317)
T 1h2a_S 133 NGIYGKVANHTMLDICSRILPKAQAVIAYGTCATFGGVQAAKPNPTGAKGVNDALKHLGVKAINIAGCPPNPYNLVGTIV 212 (317)
T ss_dssp GGTTBEETTEEHHHHHHHHGGGCSEEEEESHHHHHCCGGGSTTCTTCEECHHHHHGGGTCCCBCCCCSSCCHHHHHHHHH
T ss_pred CCcceeeCChHHHHHHHHHhccCCEEEEeccccccCCcCCCCCCCccCcCHHHhcCcCCceEEEEeCCCCCHHHHHHHHH
Confidence 688999999999999999999999999999874 457899999999 8 9999999999999999998
Q ss_pred HHHH
Q psy5227 155 STMK 158 (693)
Q Consensus 155 ~ll~ 158 (693)
+++.
T Consensus 213 ~lL~ 216 (317)
T 1h2a_S 213 YYLK 216 (317)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8764
No 16
>1cc1_S Hydrogenase (small subunit); NI-Fe-Se hydrogenase, oxidoreductase; 2.15A {Desulfomicrobium baculatum} SCOP: e.19.1.1
Probab=99.95 E-value=8.9e-29 Score=255.56 Aligned_cols=128 Identities=16% Similarity=0.355 Sum_probs=118.0
Q ss_pred ccccccccCCCCCchHHHHHhhcCCcccc---ccccceeccCC-------------------CCccEEEEccccCCCcH-
Q psy5227 34 RTSSMWPMTFGLACCAIEMMHAGASRYDL---DRFGIMFRPSP-------------------RQSDVMIVAGTLCNKMA- 90 (693)
Q Consensus 34 r~~~lw~~~~~c~gc~~e~l~~~~~~~d~---~~~~~~~~~~p-------------------~~~Dil~veG~v~~~~~- 90 (693)
+...+|++.++|+||++||+++..|.+|. +++++.|++++ +++|||+|||+|++++.
T Consensus 7 ~~~v~wl~~~~C~GC~isll~~~~p~~~~ll~~~i~l~~~~sl~~~~g~~a~~~l~~~~~~~~~~DilvVEGsV~~~~~g 86 (283)
T 1cc1_S 7 KAPVIWVQGQGCTGCSVSLLNAVHPRIKEILLDVISLEFHPTVMASEGEMALAHMYEIAEKFNGNFFLLVEGAIPTAKEG 86 (283)
T ss_dssp CEEEEEEESBCCSHHHHHHHTCBTTBHHHHHHHTEEEEECTTTCSCCHHHHHHHHHHHHHHTTTSSEEEEESBEECGGGG
T ss_pred CccEEEEecCccCcHHHHHHhccCCCHHHHHhhceeEEeccchhhhcchHHHHHHHHHHhcCCCceEEEEeCCcccCCCc
Confidence 56899999999999999999999998885 89999999986 89999999999999998
Q ss_pred ------------------HHHHHHHHHcCCCceEEeecccCCCCCcCCc--CCccccCcceee-----ec-ceeccCCCC
Q psy5227 91 ------------------PALRKVYDQMTEPKWVISMGSCANGGGYYHY--SYSVVRGCDRIV-----PV-DVYIPGCPP 144 (693)
Q Consensus 91 ------------------~~~~~~~~~~~~~~~vva~G~CA~~GGi~~~--~~~~~~~~~~~v-----~v-d~~ipGCPp 144 (693)
+.+++++++|++||+|||+||||++||||+. +|+...++++++ ++ |+|||||||
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~le~l~~~~~~ak~VIAvGtCA~~GGI~a~~~n~t~~~gv~~vl~~~~~~~p~i~IPGCPP 166 (283)
T 1cc1_S 87 RYCIVGETLDAKAHHHEVTMMELIRDLAPKSLATVAVGTCSAYGGIPAAEGNVTGSKSVRDFFADEKIEKLLVNVPGCPP 166 (283)
T ss_dssp TTBEEEC---CCSSSCCEEHHHHHHHHGGGSSEEEEESHHHHHCTGGGSTTCCSCEECHHHHHHHHTCCCCEEEECCSSC
T ss_pred eeeeecCccccccccccccHHHHHHHHhccCCEEEEEeeccccCCcCCCCCCCcccccHHHHhhcccCCCceEEeeCCCC
Confidence 8899999999999999999999999999975 667788999987 77 899999999
Q ss_pred ChhhhHHHHHHHHHHHh
Q psy5227 145 TAEALLYDYYSTMKILR 161 (693)
Q Consensus 145 ~p~~i~~~l~~ll~~Lr 161 (693)
+|++|+++|.+++..+.
T Consensus 167 ~Pe~i~~~L~~l~~~~~ 183 (283)
T 1cc1_S 167 HPDWMVGTLVAAWSHVL 183 (283)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhh
Confidence 99999999999877555
No 17
>2wpn_A Periplasmic [nifese] hydrogenase, small subunit; metal-binding, oxidoreductase, oxygen tolerance; HET: FSX SBY PSW; 2.04A {Desulfovibrio vulgaris}
Probab=99.95 E-value=1e-28 Score=258.62 Aligned_cols=128 Identities=16% Similarity=0.353 Sum_probs=118.7
Q ss_pred ccccccccCCCCCchHHHHHhhcCCcccc---ccccceeccCC-------------------CCccEEEEccccCCCcH-
Q psy5227 34 RTSSMWPMTFGLACCAIEMMHAGASRYDL---DRFGIMFRPSP-------------------RQSDVMIVAGTLCNKMA- 90 (693)
Q Consensus 34 r~~~lw~~~~~c~gc~~e~l~~~~~~~d~---~~~~~~~~~~p-------------------~~~Dil~veG~v~~~~~- 90 (693)
+...+|++.++|+||++||+++..|.+|. +++++.|++++ +++|||+|||+|++++.
T Consensus 41 ~~~v~wl~~~~C~GC~isll~~~~p~~d~ll~~~i~l~~~~slm~~~g~~a~~~l~~~~~~~~~~DIliVEGsV~~~~~g 120 (317)
T 2wpn_A 41 RPPVFWLQGQGCTGCSVTLLNSVHPSIADVLLKVISLEFHPTVMAWEGEHAIEHMRKVAEKFKGKFFLVIEGSVPVEADG 120 (317)
T ss_dssp CCEEEEEESBCCSHHHHHHHTCCCTTHHHHHHHTCEEEECTTTCSCCHHHHHHHHHHHHHHTTTTEEEEEESBEECTGGG
T ss_pred CceEEEEeCCcCCcHHHHHHhcCCCCHHHHHhhceeeEecCchhhhcchHHHHHHHHHhccCCCCeEEEEeCCcccCCCc
Confidence 56899999999999999999999998885 89999999975 78999999999999987
Q ss_pred -------------HHHHHHHHHcCCCceEEeecccCCCCCcCC--cCCccccCcceee-----ec-ceeccCCCCChhhh
Q psy5227 91 -------------PALRKVYDQMTEPKWVISMGSCANGGGYYH--YSYSVVRGCDRIV-----PV-DVYIPGCPPTAEAL 149 (693)
Q Consensus 91 -------------~~~~~~~~~~~~~~~vva~G~CA~~GGi~~--~~~~~~~~~~~~v-----~v-d~~ipGCPp~p~~i 149 (693)
+.+++++++|++||+|||+||||++||||+ .+|+...+|++++ ++ |+|||||||+|++|
T Consensus 121 ~~~~~~~~~~~~~~~~e~l~e~~~~ak~VIAvGsCA~~GGI~a~~~n~t~~~gv~~il~~~~~~vp~I~IPGCPP~Pe~i 200 (317)
T 2wpn_A 121 KYCIIGEANHHEISMVDALKEFGPNAAAVLAVGTCAAYGGIPAAEGSETGATAVSKFLGDNGIKTPVVNIPGCPPHPDWI 200 (317)
T ss_dssp TTBEEEEETTEEEEHHHHHHHHGGGEEEEEEEHHHHHHCTGGGSTTCCSCEECHHHHHHHTTCCCCEEEECSSSCCHHHH
T ss_pred ceeeecccccCCcCHHHHHHHHhccCCEEEEeccccccCCCCCCCCCCccccCHHHHhhccCCCCCeEEeeCCCCCHHHH
Confidence 789999999999999999999999999997 4777888999998 67 99999999999999
Q ss_pred HHHHHHHHHHHh
Q psy5227 150 LYDYYSTMKILR 161 (693)
Q Consensus 150 ~~~l~~ll~~Lr 161 (693)
+++|.+++...+
T Consensus 201 ~~~L~~ll~~~~ 212 (317)
T 2wpn_A 201 VGTVVLALDAIK 212 (317)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhccc
Confidence 999999998875
No 18
>3ayx_B Membrane-bound hydrogenase small subunit; oxidoreductase, membrane-bound NI-Fe hydrogenase; 1.18A {Hydrogenovibrio marinus} PDB: 3ayy_B 3ayz_B
Probab=99.94 E-value=3.2e-28 Score=250.83 Aligned_cols=126 Identities=20% Similarity=0.353 Sum_probs=114.4
Q ss_pred cccccccccCCCCCchHHHHHhhcCCcc-c-cc-cccceeccCC-------------------CCccEEEEccccCCCcH
Q psy5227 33 TRTSSMWPMTFGLACCAIEMMHAGASRY-D-LD-RFGIMFRPSP-------------------RQSDVMIVAGTLCNKMA 90 (693)
Q Consensus 33 ~r~~~lw~~~~~c~gc~~e~l~~~~~~~-d-~~-~~~~~~~~~p-------------------~~~Dil~veG~v~~~~~ 90 (693)
.+...+|++..+|+||++||+++..|.+ | +. .+++.|++++ +++|||+|||+|++++.
T Consensus 11 ~~~~v~wl~~~~C~GC~islL~~~~P~~~d~l~~~i~l~~~~tl~~a~g~~a~~~l~~~~~~~~~~dilvVeG~V~~~~~ 90 (283)
T 3ayx_B 11 PRTPVIWLHGLECTCCSESFIRSAHPLAKDVVLSMISLDYDDTLMAASGHAAEAILDEIKEKYKGNYILAVEGNPPLNQD 90 (283)
T ss_dssp CCEEEEEEECBCCSHHHHHHHTCSSSCHHHHHHHTEEEEEETTTCSCCHHHHHHHHHHHHHHTTTTEEEEEESBCBCSGG
T ss_pred CCceEEEEeCCccCcHHHHHHhcCCCcHHHHHhhceeEEEecchhhhcchhHHHHHHHHhccCCCCeEEEEeCCCccCCC
Confidence 3678999999999999999999999988 6 34 4688888764 78999999999999997
Q ss_pred ---------HHHHHHHHHcCCCceEEeecccCCCCCcCCc--CCccccCcceeee--cc---eeccCCCCChhhhHHHHH
Q psy5227 91 ---------PALRKVYDQMTEPKWVISMGSCANGGGYYHY--SYSVVRGCDRIVP--VD---VYIPGCPPTAEALLYDYY 154 (693)
Q Consensus 91 ---------~~~~~~~~~~~~~~~vva~G~CA~~GGi~~~--~~~~~~~~~~~v~--vd---~~ipGCPp~p~~i~~~l~ 154 (693)
+.+++++++|++||+|||+|+||++||||+. +|+.+.|++++++ || +|||||||+|++|+++|.
T Consensus 91 g~~~~~~g~~~l~~~~~~~~~ak~VIA~GsCA~~GGi~a~~pn~~~~~gv~~~i~~~vd~pvi~IPGCPP~Pe~i~~~l~ 170 (283)
T 3ayx_B 91 GMSCIIGGRPFSEQLKRMADDAKAIISWGSCASWGCVQAAKPNPTQATPVHKFLGGGYDKPIIKVPGCPPIAEVMTGVIT 170 (283)
T ss_dssp GTTBEETTEEHHHHHHHHHHTEEEEEEEHHHHHTCTGGGSTTCTTCBCCHHHHHCTTCCSCEEEECSSSCCHHHHHHHHH
T ss_pred cceeeeCCcHHHHHHHHHcccCCEEEEeeeccccCCCCCCCCCCccCcChhHhccccCCCceEEeeCCCCCHHHHHHHHH
Confidence 8899999999999999999999999999986 6788899999999 99 999999999999999998
Q ss_pred HHHH
Q psy5227 155 STMK 158 (693)
Q Consensus 155 ~ll~ 158 (693)
+++.
T Consensus 171 ~~Ll 174 (283)
T 3ayx_B 171 YMLT 174 (283)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8654
No 19
>1yqw_A Periplasmic [NIFE] hydrogenase small subunit; NI-Fe hydrogenase unready state, oxidoreductase; 1.83A {Desulfovibrio fructosovorans} PDB: 3cur_A 3cus_A 3h3x_A 1yrq_A 1frf_S
Probab=99.93 E-value=3.2e-27 Score=241.69 Aligned_cols=126 Identities=21% Similarity=0.352 Sum_probs=112.2
Q ss_pred cccccccccCCCCCchHHHHHhhcCCccc-c--ccccceeccCC-------------------CCccEEEEccccCCCcH
Q psy5227 33 TRTSSMWPMTFGLACCAIEMMHAGASRYD-L--DRFGIMFRPSP-------------------RQSDVMIVAGTLCNKMA 90 (693)
Q Consensus 33 ~r~~~lw~~~~~c~gc~~e~l~~~~~~~d-~--~~~~~~~~~~p-------------------~~~Dil~veG~v~~~~~ 90 (693)
.+...+|+...+|+||++||+++..|.+| + +.+++.|++++ ++ |||+|||+|++++.
T Consensus 5 ~~~~v~wl~~~~C~GC~isll~~~~P~~d~ll~~~i~l~~~~tlm~a~g~~a~~~~~~~~~~~~~-dil~VeG~V~~~~~ 83 (264)
T 1yqw_A 5 HRPSVVWLHNAECTGCTEAAIRTIKPYIDALILDTISLDYQETIMAAAGEAAEAALHQALEGKDG-YYLVVEGGLPTIDG 83 (264)
T ss_dssp CCCEEEEEECBCCSHHHHHHTTCBTTBHHHHHHHTCEEEEETTTCSCCHHHHHHHHHHHHTCTTC-EEEEEESBEECGGG
T ss_pred CCceEEEEeCCccCcHHHHHHHcCCCCHHHHHhcceEEEEecchhhhchhhHHHHHHHHhccCCC-eEEEEeCCcccCCC
Confidence 35688999999999999999999999998 4 66788888763 57 99999999999998
Q ss_pred ---------HHHHHHHHHcCCCceEEeecccCCCCCcCCc--CCccccCcce--eeecceeccCCCCChhhhHHHHHHHH
Q psy5227 91 ---------PALRKVYDQMTEPKWVISMGSCANGGGYYHY--SYSVVRGCDR--IVPVDVYIPGCPPTAEALLYDYYSTM 157 (693)
Q Consensus 91 ---------~~~~~~~~~~~~~~~vva~G~CA~~GGi~~~--~~~~~~~~~~--~v~vd~~ipGCPp~p~~i~~~l~~ll 157 (693)
+.+++++++|++||+|||+|+||++||||+. +++...++++ ++|| +|||||||+|++|+++|++++
T Consensus 84 g~~~~~~g~~~~~~~~~~~~~~k~VIA~GsCA~~GGi~a~~~n~~~~~gv~~v~~~PV-i~IPGCPP~Pe~i~~~l~~ll 162 (264)
T 1yqw_A 84 GQWGMVAGHPMIETTKKAAAKAKGIICIGTCSAYGGVQKAKPNPSQAKGVSEALGVKT-INIPGCPPNPINFVGAVVHVL 162 (264)
T ss_dssp GTTBEETTEEHHHHHHHHHHTCSCEEEESHHHHHCCGGGSTTCTTCEECHHHHHTSCC-EEECSSSCCHHHHHHHHHHHH
T ss_pred ccceeeCChHHHHHHHHHhcCCCEEEEeccccccCCccCCCCCCcccccccccCCCCE-EEeeCCCCCHHHHHHHHHHHH
Confidence 8899999999999999999999999999987 4556778987 6788 999999999999999998887
Q ss_pred HHH
Q psy5227 158 KIL 160 (693)
Q Consensus 158 ~~L 160 (693)
+.-
T Consensus 163 ~~~ 165 (264)
T 1yqw_A 163 TKG 165 (264)
T ss_dssp HTC
T ss_pred hCC
Confidence 644
No 20
>3rgw_S Membrane-bound hydrogenase (NIFE) small subunit H; [NIFE] hydrogenase, high-resolution knallgasbacteria, proteobacteria; 1.50A {Ralstonia eutropha}
Probab=99.93 E-value=9e-27 Score=243.62 Aligned_cols=127 Identities=19% Similarity=0.350 Sum_probs=111.8
Q ss_pred cccccccccCCCCCchHHHHHhhcCCccc---cccccceeccC-------------------CCCccEEEEccccCCCc-
Q psy5227 33 TRTSSMWPMTFGLACCAIEMMHAGASRYD---LDRFGIMFRPS-------------------PRQSDVMIVAGTLCNKM- 89 (693)
Q Consensus 33 ~r~~~lw~~~~~c~gc~~e~l~~~~~~~d---~~~~~~~~~~~-------------------p~~~Dil~veG~v~~~~- 89 (693)
.|...+|++..+|+||++||+++..|.+| ++...+.|+|+ ++++|||+|||+|++++
T Consensus 5 ~r~~ViWl~~~~CtGCt~SlL~~~~P~l~~ll~~~I~L~yhptlm~~~G~~a~~~l~~~~~~~~~~dILlVEGsV~~~~~ 84 (339)
T 3rgw_S 5 PRTPVLWLHGLECTCCSESFIRSAHPLAKDVVLSMISLDYDDTLMAAAGHQAEAILEEIMTKYKGNYILAVEGNPPLNQD 84 (339)
T ss_dssp CCEEEEEEECBCCSHHHHHHTTCBTTBHHHHHHHTEEEEEETTTCSCCHHHHHHHHHHHHHHTTTCSEEEEESBCBCSGG
T ss_pred CCCcEEEEECCcCCchHHHHHcCCCCCHHHHHhCCeeEEecchhhhhhhHHHHHHHHHHHhccCCCcEEEEeeeccCCCC
Confidence 46789999999999999999999999887 34455677774 35789999999999998
Q ss_pred --------HHHHHHHHHHcCCCceEEeecccCCCCCcCCcCC--ccccCcceeee--cceeccCCCCChhhhHHHHHHHH
Q psy5227 90 --------APALRKVYDQMTEPKWVISMGSCANGGGYYHYSY--SVVRGCDRIVP--VDVYIPGCPPTAEALLYDYYSTM 157 (693)
Q Consensus 90 --------~~~~~~~~~~~~~~~~vva~G~CA~~GGi~~~~~--~~~~~~~~~v~--vd~~ipGCPp~p~~i~~~l~~ll 157 (693)
++.+++++++|++||+|||+|+||++||||+.++ +...+++++++ ||++||||||+|++|+++|++++
T Consensus 85 g~y~~~gg~~~~e~l~e~~~~~k~VIAvGtCA~~GGi~a~~~n~~~~~gv~~~i~~~vdi~IPGCPP~Pe~i~~~l~~ll 164 (339)
T 3rgw_S 85 GMSCIIGGRPFIEQLKYVAKDAKAIISWGSCASWGCVQAAKPNPTQATPVHKVITDKPIIKVPGCPPIAEVMTGVITYML 164 (339)
T ss_dssp GTTBEETTEEHHHHHHHHHTTCSEEEEEHHHHHTCTGGGSTTCTTCBCCGGGTCCSSCEEEECSSSCCHHHHHHHHHHHH
T ss_pred cceeccCChHHHHHHHHHccCCCEEEEeccccccCCcCCCCCCccccCCHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHH
Confidence 4779999999999999999999999999998765 45679999998 99999999999999999998887
Q ss_pred HH
Q psy5227 158 KI 159 (693)
Q Consensus 158 ~~ 159 (693)
.+
T Consensus 165 ~~ 166 (339)
T 3rgw_S 165 TF 166 (339)
T ss_dssp HH
T ss_pred hc
Confidence 65
No 21
>3myr_A Hydrogenase (NIFE) small subunit HYDA; [NIFE] hydrogenase, photosynthetic P sulfur bacterium, iron-sulfur cluster, NI-A state; HET: SF4; 2.10A {Allochromatium vinosum} SCOP: e.19.1.0
Probab=99.93 E-value=4.3e-27 Score=240.43 Aligned_cols=127 Identities=20% Similarity=0.317 Sum_probs=110.8
Q ss_pred cccccccccCCCCCchHHHHHhhcCCccc---cccccceeccCC-------------------CCccEEEEccccC--CC
Q psy5227 33 TRTSSMWPMTFGLACCAIEMMHAGASRYD---LDRFGIMFRPSP-------------------RQSDVMIVAGTLC--NK 88 (693)
Q Consensus 33 ~r~~~lw~~~~~c~gc~~e~l~~~~~~~d---~~~~~~~~~~~p-------------------~~~Dil~veG~v~--~~ 88 (693)
.|...+|++..+|+||++||+++..|.++ ++...+.|+++- +.+|||+|||+|+ ++
T Consensus 2 ~r~~viWl~~~~C~GCt~SlL~~~~p~l~~ll~~~I~l~yhptl~~~~G~~a~~~l~~~~~~~~~~dilvVEGsV~~p~~ 81 (269)
T 3myr_A 2 RRPSVIWLSFQECTGCTESLTRAHAPTLEDLILDFISLDYHHTLQAASGEAAEAARLQAMDENRGQYLVIVDGSIPGPDA 81 (269)
T ss_dssp CSCEEEEEECBCCSHHHHHHHHCCSSCHHHHHHHTCEEEECTTTCSSCHHHHHHHHHHHHHHTTTTCEEEEESBEECTTS
T ss_pred CCCeEEEEeCCccCchHHHHHCCCCCCHHHHHhCCeeEEechhhhhhhhHHHHHHHHHHHhcCCCCeEEEEeccCCCCcC
Confidence 35678999999999999999999999888 344566777752 4689999999999 77
Q ss_pred c--------HHHHHHHHHHcCCCceEEeecccCCCCCcCCcCC--ccccCcceee--ecceeccCCCCChhhhHHHHHHH
Q psy5227 89 M--------APALRKVYDQMTEPKWVISMGSCANGGGYYHYSY--SVVRGCDRIV--PVDVYIPGCPPTAEALLYDYYST 156 (693)
Q Consensus 89 ~--------~~~~~~~~~~~~~~~~vva~G~CA~~GGi~~~~~--~~~~~~~~~v--~vd~~ipGCPp~p~~i~~~l~~l 156 (693)
+ ++.+++++++|++||+|||+|+||++||||+.++ +...|+++++ +||++||||||+|++|+++|+++
T Consensus 82 ~~g~~~~gg~~~~e~l~e~~~~~k~VIA~G~CA~~GGi~a~~~n~~~~~gv~~~i~~~vdi~IPGCPp~Pe~i~~~l~~l 161 (269)
T 3myr_A 82 NPGFSTVAGHSNYSILMETVEHAAAVIAVGTCAAFGGLPQARPNPTGAMSVMDLVRDKPVINVPGCPPIPMVITGVIAHY 161 (269)
T ss_dssp CGGGBEETTEEHHHHHHHHHTTCSEEEEEHHHHHHCHHHHSTTCTTCEECHHHHCCSSCEEEECSSSCCHHHHHHHHHHH
T ss_pred CCccceeCChHHHHHHHHHcccCCEEEEeccccccCCccCCCCCccccCCHHHhCCCCCEEEecCCCCCHHHHHHHHHHH
Confidence 7 5788899999999999999999999999997654 4567999999 99999999999999999999888
Q ss_pred HHH
Q psy5227 157 MKI 159 (693)
Q Consensus 157 l~~ 159 (693)
+.+
T Consensus 162 l~~ 164 (269)
T 3myr_A 162 LVF 164 (269)
T ss_dssp HHH
T ss_pred HHc
Confidence 753
No 22
>3uqy_S Hydrogenase-1 small chain; membrane-bound hydrogenase, oxidoreductase; HET: LMT; 1.47A {Escherichia coli} PDB: 3usc_S* 3use_S*
Probab=99.93 E-value=4.4e-27 Score=245.97 Aligned_cols=127 Identities=16% Similarity=0.311 Sum_probs=112.1
Q ss_pred cccccccccCCCCCchHHHHHhhcCCccc---cccccceeccCC-------------------CCccEEEEccccCCCcH
Q psy5227 33 TRTSSMWPMTFGLACCAIEMMHAGASRYD---LDRFGIMFRPSP-------------------RQSDVMIVAGTLCNKMA 90 (693)
Q Consensus 33 ~r~~~lw~~~~~c~gc~~e~l~~~~~~~d---~~~~~~~~~~~p-------------------~~~Dil~veG~v~~~~~ 90 (693)
.|...+|++..+|+||++||+++..|.+| ++...+.|+|+- +.+|||+|||+|++++.
T Consensus 5 ~r~~ViWl~~~~CtGCs~SlL~~~~P~l~~lll~~I~L~yhptlm~~~G~~ae~~l~~~~~~~~~~dILlVeGsV~~~~~ 84 (335)
T 3uqy_S 5 PRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQ 84 (335)
T ss_dssp CCEEEEEEECBCCSHHHHHHHTCBTTBHHHHHHHTEEEEEETTTCSCCHHHHHHHHHHHHHHTTTTEEEEEESBCBCGGG
T ss_pred CCCcEEEEeCCccCchHHHHHCCCCCCHHHHHhcCceEeechhhhhhhhHHHHHHHHHHHhcCCCCeEEEEeccCCCCCC
Confidence 46789999999999999999999999988 344566777742 56899999999999987
Q ss_pred ---------HHHHHHHHHcCCCceEEeecccCCCCCcCCcCCc--cccCcceeee--cceeccCCCCChhhhHHHHHHHH
Q psy5227 91 ---------PALRKVYDQMTEPKWVISMGSCANGGGYYHYSYS--VVRGCDRIVP--VDVYIPGCPPTAEALLYDYYSTM 157 (693)
Q Consensus 91 ---------~~~~~~~~~~~~~~~vva~G~CA~~GGi~~~~~~--~~~~~~~~v~--vd~~ipGCPp~p~~i~~~l~~ll 157 (693)
+.+++++++|++||+|||+|+||++||||+.+|+ .+.||+++++ +|+|||||||+|++|+++|++++
T Consensus 85 G~y~~~gg~~~l~~l~e~~~~ak~VIAvGsCA~~GGi~a~~~npt~~~gv~~vi~~~~di~IPGCPP~Pe~i~~~l~~ll 164 (335)
T 3uqy_S 85 GMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMV 164 (335)
T ss_dssp GTTBEETTEEHHHHHHHHHHHEEEEEEEHHHHHTCHHHHSTTCTTCBCCGGGTCCSSCEEEECSSSCCHHHHHHHHHHHH
T ss_pred cceeccCCcHHHHHHHHHccCCCEEEEeccccccCCccCCCCCcccCcCHHHhCCCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 8899999999999999999999999999987654 5679999998 79999999999999999998877
Q ss_pred HH
Q psy5227 158 KI 159 (693)
Q Consensus 158 ~~ 159 (693)
.+
T Consensus 165 ~~ 166 (335)
T 3uqy_S 165 TF 166 (335)
T ss_dssp HH
T ss_pred hC
Confidence 55
No 23
>3mcr_A NADH dehydrogenase, subunit C; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.65A {Thermobifida fusca}
Probab=99.90 E-value=1.4e-24 Score=213.02 Aligned_cols=97 Identities=34% Similarity=0.619 Sum_probs=87.1
Q ss_pred HHHHHHHHHhhhcccccccccccccccccccccccCCCCCCCCCcEEEEEEeeccccCeEEEEEEeecCCCCCCcCcccc
Q psy5227 152 DYYSTMKILRDHVNFRFEQLIDLCGIDYSIYNKNINSDNSNKNLRFAIVLHLLSLNYNWRLRVRVFAENNELPRLHSITS 231 (693)
Q Consensus 152 ~l~~ll~~Lr~~~~~~fd~L~~~~~vd~~~~~~~~~~~~~~~~~~~~~vyh~~~~~~~~~l~v~v~~~~~~~~~~~s~~~ 231 (693)
.+..++++||++.+++|++|.++||+||+.. .+.+|+++|||.|+..+.+++|+|.+++ ++|++|||++
T Consensus 117 ~l~~v~~~Lkd~~~~~F~~L~dltgVDy~~~----------~g~rFeVVYhL~S~~~n~rIrVKv~v~~-~~P~vPSIt~ 185 (213)
T 3mcr_A 117 HLLDVATRLRDDPALRFELCLGVTGVHYPED----------EGNELHAVYALRSITHNYEIRLEVSCPD-SDPHIPSIVS 185 (213)
T ss_dssp GHHHHHHHHHHCTTTCCCEEEEEEEEECTTS----------TTCCEEEEEEEEETTTTEEEEEEEEECT-TSCEEECCTT
T ss_pred HHHHHHHHHHhCcCCCcceEEEEEeeccccc----------CCCeeEEEEeeeecCCCcEEEEEEEecC-CCCccCChhh
Confidence 3446789999988899999999999999721 2358999999999999999999999987 6799999999
Q ss_pred cccccchhhhhhccccCceecCCCCCcc
Q psy5227 232 LWSSANWYEREAFDLFGIFFDGHDDLRR 259 (693)
Q Consensus 232 ~~~~a~~~Ere~~d~~Gi~~~g~pd~r~ 259 (693)
+||+|+|+|||+||||||.|+|||||||
T Consensus 186 I~P~AnW~ERE~~DMFGI~FeGHPDLRR 213 (213)
T 3mcr_A 186 VYPTNDWHEREAWDFFGIIFDGHPALTR 213 (213)
T ss_dssp TCTTHHHHHHHHHHHHCCEEETCGGGC-
T ss_pred hhhccCHHHHHHHHhcCceeCCCCCCCC
Confidence 9999999999999999999999999997
No 24
>3rko_A NADH-quinone oxidoreductase subunit A; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=98.26 E-value=1.2e-08 Score=94.98 Aligned_cols=42 Identities=26% Similarity=0.434 Sum_probs=19.8
Q ss_pred CcccCCCCCCCCCCCCcccCCCCcccccccccccccccccCC
Q psy5227 2 GRILGPYKPNPQKNSPYECGFKEFGDKLINWTRTSSMWPMTF 43 (693)
Q Consensus 2 ~~~l~~~~~~~~K~~pyECGf~p~~~~rir~~r~~~lw~~~~ 43 (693)
++++++|+++++|.+||||||+|.+++|.+|+.++++.++.|
T Consensus 34 ~~~l~~~~~~~eK~spyECGfdp~~~ar~~FsirFfLiAilF 75 (147)
T 3rko_A 34 GWFLGGRARARSKNVPFESGIDSVGSARLRLSAKFYLVAMFF 75 (147)
T ss_dssp HHHHHHHHHCC-----------------CCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCcccCCCcccCCCCCCCCCCCCcchhHHHHHHH
Confidence 346677778999999999999999999999999998877654
No 25
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=30.61 E-value=8.5 Score=35.80 Aligned_cols=18 Identities=11% Similarity=0.056 Sum_probs=14.2
Q ss_pred CccEEEEccccCCCcHHH
Q psy5227 75 QSDVMIVAGTLCNKMAPA 92 (693)
Q Consensus 75 ~~Dil~veG~v~~~~~~~ 92 (693)
.+|+++++|.++...+..
T Consensus 62 ~~DlVittGG~g~g~~D~ 79 (164)
T 2is8_A 62 GLDLILTNGGTGLAPRDR 79 (164)
T ss_dssp CCSEEEEESCCSSSTTCC
T ss_pred CCCEEEEcCCCCCCCCCC
Confidence 689999999998765433
No 26
>3r07_C Putative lipoate-protein ligase A subunit 2; adenylate-forming enzyme, BI-partite, ATP-binding, transferase; 2.70A {Thermoplasma acidophilum dsm 1728}
Probab=29.75 E-value=1e+02 Score=25.48 Aligned_cols=56 Identities=25% Similarity=0.303 Sum_probs=44.5
Q ss_pred EEeeCCcceeEEEEEECCCCceeEEEEeCCcccC----HHHHHHHHcCCChhhHHHHhccc
Q psy5227 628 SCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAH----LQSLSEMISGHMISDVVTIIGTQ 684 (693)
Q Consensus 628 g~vEapRG~L~h~v~~d~~g~i~r~~i~~PS~~N----~~~le~~l~G~~i~d~~~ii~S~ 684 (693)
+-.-.|-|.+-..+.++ +|+|..++|-.=-+-. +..++.+|.|.+..++..+++++
T Consensus 10 ~~~kf~~G~v~v~l~v~-~G~I~~vki~GDFf~~p~~~i~~le~~L~G~~~~~i~~~l~~~ 69 (91)
T 3r07_C 10 KNWKAKKGLIRVTLDLD-GNRIKDIHISGDFFMFPEDSINRLEDMLRGSSIEKINDIIRDF 69 (91)
T ss_dssp EEEECSSCEEEEEEEEE-TTEEEEEEEEEEBCCBSTTHHHHHHHHHTTSBTTSHHHHHHHH
T ss_pred EEEEcCCcEEEEEEEEc-CCEEEEEEEEcccCCCcchhHHHHHHHHCCCCHHHHHHHHHhh
Confidence 33455667777777775 6999999999887744 78999999999988888888766
No 27
>3r07_C Putative lipoate-protein ligase A subunit 2; adenylate-forming enzyme, BI-partite, ATP-binding, transferase; 2.70A {Thermoplasma acidophilum dsm 1728}
Probab=29.02 E-value=52 Score=27.36 Aligned_cols=38 Identities=16% Similarity=0.333 Sum_probs=30.2
Q ss_pred cceEEEEEEcCCeEEEEEeeeccc------hhhHHHHhhCCCcC
Q psy5227 296 GVLRLILELEGEVVRKADPHIGLL------HRATEKLAEQRTYL 333 (693)
Q Consensus 296 G~~r~~l~v~Ge~I~~~~~~~g~~------hRG~Ekllegr~~~ 333 (693)
|.+++.+.+++++|.++.+.-=+. -.-+|..|.|.++.
T Consensus 17 G~v~v~l~v~~G~I~~vki~GDFf~~p~~~i~~le~~L~G~~~~ 60 (91)
T 3r07_C 17 GLIRVTLDLDGNRIKDIHISGDFFMFPEDSINRLEDMLRGSSIE 60 (91)
T ss_dssp CEEEEEEEEETTEEEEEEEEEEBCCBSTTHHHHHHHHHTTSBTT
T ss_pred cEEEEEEEEcCCEEEEEEEEcccCCCcchhHHHHHHHHCCCCHH
Confidence 788999999999999998643322 24779999999887
No 28
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=27.85 E-value=42 Score=33.99 Aligned_cols=93 Identities=11% Similarity=0.099 Sum_probs=60.1
Q ss_pred cccCCCCcccccccccccccccccCCCCCchHHHH--HhhcCCccccccccceeccCCCCccEEEEccccCCCc---HHH
Q psy5227 18 YECGFKEFGDKLINWTRTSSMWPMTFGLACCAIEM--MHAGASRYDLDRFGIMFRPSPRQSDVMIVAGTLCNKM---APA 92 (693)
Q Consensus 18 yECGf~p~~~~rir~~r~~~lw~~~~~c~gc~~e~--l~~~~~~~d~~~~~~~~~~~p~~~Dil~veG~v~~~~---~~~ 92 (693)
.=||++|++-.+..+.-...+|+.++.-..+++-= +........++-.+....+-+..+|+.++-=.+..-+ +..
T Consensus 139 LGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~Le~q~kg~ 218 (281)
T 3lcv_B 139 LACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPCLETQQRGS 218 (281)
T ss_dssp TTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHHHHHHSTTH
T ss_pred eccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHHhhhhhhHH
Confidence 45999999999999988889999999544444322 2222333334433444444567899998765554322 123
Q ss_pred HHHHHHHcCCCceEEeec
Q psy5227 93 LRKVYDQMTEPKWVISMG 110 (693)
Q Consensus 93 ~~~~~~~~~~~~~vva~G 110 (693)
.-++.++..-+.++|..=
T Consensus 219 g~~ll~aL~~~~vvVSfp 236 (281)
T 3lcv_B 219 GWEVIDIVNSPNIVVTFP 236 (281)
T ss_dssp HHHHHHHSSCSEEEEEEE
T ss_pred HHHHHHHhCCCCEEEecc
Confidence 336888888888888773
No 29
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=27.05 E-value=22 Score=33.50 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=18.3
Q ss_pred eeccCCCCChhhhHHHHHHHHHHHhh
Q psy5227 137 VYIPGCPPTAEALLYDYYSTMKILRD 162 (693)
Q Consensus 137 ~~ipGCPp~p~~i~~~l~~ll~~Lr~ 162 (693)
+.+||+|......++.+..++.+|+.
T Consensus 132 ~~LPG~P~~~~~~~~~~~~v~p~l~~ 157 (178)
T 2pbq_A 132 VNLPGKPQSIKVCLDAVMPAIPYCID 157 (178)
T ss_dssp EEECSSHHHHHHHHHHHGGGHHHHHH
T ss_pred EECCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88999998888777766434444443
No 30
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=23.71 E-value=20 Score=33.25 Aligned_cols=15 Identities=20% Similarity=0.228 Sum_probs=12.5
Q ss_pred CccEEEEccccCCCc
Q psy5227 75 QSDVMIVAGTLCNKM 89 (693)
Q Consensus 75 ~~Dil~veG~v~~~~ 89 (693)
.+|+++.+|.++...
T Consensus 69 ~~DlVittGG~g~~~ 83 (167)
T 2g2c_A 69 GARFIITAGGTGIRA 83 (167)
T ss_dssp TCSEEEEESCCSSST
T ss_pred CCCEEEECCCCCCCC
Confidence 499999999997644
Done!