RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5227
(693 letters)
>gnl|CDD|180385 PRK06075, PRK06075, NADH dehydrogenase subunit D; Validated.
Length = 392
Score = 756 bits (1956), Expect = 0.0
Identities = 277/415 (66%), Positives = 332/415 (80%), Gaps = 25/415 (6%)
Query: 279 EIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPY 338
EI++Y LNFGPQHPAAHGVLRLILEL+GEVV +ADPHIG LHR TEKLAE RTYLQ++PY
Sbjct: 3 EIRNYTLNFGPQHPAAHGVLRLILELDGEVVVRADPHIGYLHRGTEKLAEYRTYLQAIPY 62
Query: 339 MDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIG 398
DRLDYVS M NEHAY +A+EKLL I++P RAQYIRV+F E+ R+L+HL+W+G+H+LD+G
Sbjct: 63 FDRLDYVSPMNNEHAYCLAVEKLLGIEVPERAQYIRVLFLELNRILSHLLWLGTHALDLG 122
Query: 399 AMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATK 458
AM V L+ FRERE LLD YEAV+GARMH AY RPGGV RDLP+ + +
Sbjct: 123 AMTVFLWGFREREKLLDLYEAVTGARMHHAYIRPGGVRRDLPDGLLED------------ 170
Query: 459 ILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTG 518
I DF + FPK +D+YETLLTDNRIWKQRLVG+GVVS ERAL++GFTG
Sbjct: 171 -------------IRDFLDYFPKRLDDYETLLTDNRIWKQRLVGVGVVSKERALALGFTG 217
Query: 519 PMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKW 578
PMLR SGV WDLRK QPYE+Y+ L+FD+P+GKNGD YDRYLVR+EEMRQS +II+QC+
Sbjct: 218 PMLRASGVAWDLRKSQPYEVYDELDFDVPVGKNGDCYDRYLVRVEEMRQSLRIIEQCLDR 277
Query: 579 LRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFG 638
LR GPV+ ++ KI PAR+ MK++ME LIHHFKL TEGF VP GE+Y+ VE PKGEFG
Sbjct: 278 LRPPPGPVMVDDPKIAPPARLEMKTSMEALIHHFKLVTEGFRVPAGEVYAAVESPKGEFG 337
Query: 639 IYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+YLVSDG NKPYR+KIR+P FAHLQ+L EM GHM++DVV IIG+ DIVFGE+DR
Sbjct: 338 VYLVSDGGNKPYRVKIRAPSFAHLQALDEMCRGHMLADVVAIIGSLDIVFGEVDR 392
>gnl|CDD|223722 COG0649, NuoD, NADH:ubiquinone oxidoreductase 49 kD subunit 7
[Energy production and conversion].
Length = 398
Score = 650 bits (1678), Expect = 0.0
Identities = 243/418 (58%), Positives = 309/418 (73%), Gaps = 27/418 (6%)
Query: 276 PVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQS 335
++ LNFGPQHP+ HGVLRLILEL+GE+V ADP IG LHR EKLAE RTYLQ+
Sbjct: 8 SEENTENMFLNFGPQHPSTHGVLRLILELDGEIVVDADPDIGYLHRGMEKLAENRTYLQN 67
Query: 336 LPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSL 395
+PY DRLDY+S M NE AYV+A+EKLL I++P RAQYIRVM E+ R+ +HL+W+G+ +L
Sbjct: 68 IPYTDRLDYLSAMNNELAYVLAVEKLLGIEVPERAQYIRVMLSELNRIASHLLWLGTFAL 127
Query: 396 DIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNK 455
D+GAM LYAFRERE ++D +EA++GARMH AY+RPGGV RDLPE
Sbjct: 128 DLGAMTPFLYAFREREKIMDLFEAITGARMHHAYFRPGGVRRDLPE-------------- 173
Query: 456 ATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMG 515
L+ I +F + FPK +DEYE LLT NRIW+ RL G+GV+S E AL G
Sbjct: 174 -----------GWLELIREFLDYFPKRLDEYEKLLTKNRIWRARLEGVGVLSKEEALEWG 222
Query: 516 FTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQC 575
TGPMLR SGV +D+RK +PYE Y+ L+FD+P+GKNGD Y RYLVR+EEMRQS +II+QC
Sbjct: 223 VTGPMLRASGVDYDVRKDEPYEAYDELDFDVPVGKNGDCYARYLVRMEEMRQSIRIIEQC 282
Query: 576 IKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKG 635
+ L KGPV + + K T P++ MK +ME LIHHFKL TEGF VP GE+Y+ VE PKG
Sbjct: 283 LDKLP--KGPVKNEDPKTTPPSKERMKESMEALIHHFKLVTEGFKVPAGEVYAAVEAPKG 340
Query: 636 EFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
E G+Y+VSDG+NKPYR+KIR+P FAHLQ+L E++ GH ++D++ I+G+ DIV GE+DR
Sbjct: 341 ELGVYIVSDGSNKPYRVKIRAPSFAHLQALPELLKGHRLADLIAILGSIDIVMGEVDR 398
>gnl|CDD|233658 TIGR01962, NuoD, NADH dehydrogenase I, D subunit. This model
recognizes specificially the D subunit of NADH
dehydrogenase I complex. It excludes the related chain
of NAD(P)H-quinone oxidoreductases from chloroplast and
Synechocystis, where the quinone may be plastoquinone
rather than ubiquinone. This subunit often appears as a
C/D fusion [Energy metabolism, Electron transport].
Length = 386
Score = 625 bits (1613), Expect = 0.0
Identities = 229/413 (55%), Positives = 297/413 (71%), Gaps = 27/413 (6%)
Query: 281 KSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMD 340
+ LN GPQHP+ HGVLRLILEL+GE V +ADPHIG LHR TEKLAE RTY Q +PY D
Sbjct: 1 EFMILNLGPQHPSTHGVLRLILELDGEYVVRADPHIGYLHRGTEKLAENRTYQQYIPYTD 60
Query: 341 RLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAM 400
RLDY+S NE AY +A+EKLL I++P RAQ IRVM E+ R+ +HL++IG+H+LD+GAM
Sbjct: 61 RLDYLSPFSNELAYCLAVEKLLGIEVPRRAQVIRVMLSELNRISSHLLFIGTHALDLGAM 120
Query: 401 GVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKIL 460
LYAFRERE +LD +EA++GARMH+AY+R GGV DLPE
Sbjct: 121 TPFLYAFREREKILDLFEAITGARMHSAYFRIGGVALDLPE------------------- 161
Query: 461 NENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPM 520
+ L+ I +F +FPK + +YETLL +NRIWKQR G+GVVS + AL G TGPM
Sbjct: 162 ------NWLEEIREFLEQFPKRLRDYETLLNENRIWKQRTQGVGVVSAKDALDWGLTGPM 215
Query: 521 LRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLR 580
LRGSG+ WD+RK +PYE Y+ +FD+P+G NGD YDRYL+R+ EMR+S KII+QC++ +
Sbjct: 216 LRGSGIDWDIRKSEPYEGYDEYDFDVPVGGNGDCYDRYLLRVLEMRESIKIIEQCLEKMP 275
Query: 581 SNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIY 640
GP+ ++N K+ P + M ++ME LIHHFKL TEGF VP GE+Y +E PKGE G Y
Sbjct: 276 --PGPIKADNPKLAPPPKERMLTSMEALIHHFKLVTEGFRVPAGEVYVPIESPKGELGFY 333
Query: 641 LVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
++SDG KPYR+KIR+P FAHLQ+L M GH ++D++ I+G+ D V GE+DR
Sbjct: 334 IISDGGTKPYRLKIRAPSFAHLQALEAMCVGHYLADLIAILGSIDPVMGEVDR 386
>gnl|CDD|183955 PRK13292, PRK13292, trifunctional NADH dehydrogenase I subunit
B/C/D; Provisional.
Length = 788
Score = 490 bits (1262), Expect = e-164
Identities = 219/579 (37%), Positives = 322/579 (55%), Gaps = 67/579 (11%)
Query: 142 CPPTAEALLYDYYSTMKILRDHVNFRFEQLIDLCGIDYSIYNKNINSDNSNKNLRFAIVL 201
CPP L+ + ++ L+ + F +L DL +D S K F +
Sbjct: 250 CPP---ELVPE---VLRHLKKRASSPFRRLEDLAAVDESCRRDR------EKFPDFTVNY 297
Query: 202 HLLSLNYNWRLRVRVFAENNELPRLHSITSLWSSANWYEREAFDLFGIFFDGHDDLRRLL 261
HLLS + +R++ P L S T ++ +ANWYEREAFD+FGI F GH +LRR+L
Sbjct: 298 HLLSFDTPGHVRIKTELRGRT-PELPSATGVFPAANWYEREAFDMFGIRFAGHPNLRRIL 356
Query: 262 TDYGFVGHPFRKDFPV---------------------------IEIKSYKLNFGPQHPAA 294
+ GHP RK+ P ++ ++ LN GPQHP
Sbjct: 357 MPPDWEGHPLRKEHPFRATEMPPYTRDDARRLQPLPAGDFFDRVDEETLILNLGPQHPGT 416
Query: 295 HGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAY 354
HG++R +L+L+GE + D IG HR EK+ E++ + Q +PY DR+DY++ + N AY
Sbjct: 417 HGIIRFVLKLDGEEIVDMDSDIGYHHRGAEKIGERQHWNQFIPYTDRIDYLAGVQNNLAY 476
Query: 355 VMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLLYAFREREDLL 414
V ++E L I++P RA YIRVM E+ R+ NHL+W+G+ + D+GAM + Y F +RE +
Sbjct: 477 VNSVETLCGIEVPDRAIYIRVMLSELFRIANHLVWLGTFAADVGAMTPVFYTFTDREKIF 536
Query: 415 DCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENRQGSLLDFIED 474
D E ++G RMH A++R GGV DLPE + +E
Sbjct: 537 DIVEMITGGRMHPAWFRIGGVAEDLPE-------------------------GWKEAVEA 571
Query: 475 FTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGSGVKWDLRKKQ 534
F FP + EYE LLT N I+K RL G+GV++ + A+ G +GP LR G+ WDLRKK
Sbjct: 572 FLRWFPGRLKEYEDLLTGNPIFKARLKGVGVITRDEAVEWGISGPNLRACGLAWDLRKKM 631
Query: 535 PYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKGPVISNNNKIT 594
PY Y+ +F++P + GD Y RYLVR+EEMRQS +I++Q + G IS++ +
Sbjct: 632 PYGGYDRFDFEVPTAEGGDCYARYLVRMEEMRQSLRIVRQAAAGMPG--GRWISDDYRYV 689
Query: 595 SPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKPYRIKI 654
P + + ++E LIHHF T G P GE Y+ +E PKGE G ++VSDG N YR++I
Sbjct: 690 LPQKRDTLKDIESLIHHFVNVTRGPAPPKGECYAAIEAPKGENGYFVVSDGLNIAYRMRI 749
Query: 655 RSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
R+P F H+Q+L + G +++D + IIG+ D V ++DR
Sbjct: 750 RTPSFPHIQALPLLSRGWLVADFLAIIGSIDFVLADLDR 788
Score = 198 bits (505), Expect = 6e-54
Identities = 76/125 (60%), Positives = 99/125 (79%), Gaps = 2/125 (1%)
Query: 27 DKLINWTRTSSMWPMTFGLACCAIEMMHAGASRYDLDRFGI-MFRPSPRQSDVMIVAGTL 85
D LINW R +S+WPM FGL+CC +EMM + SRYD+ RFG + R +PR++D+M++AGT+
Sbjct: 13 DDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDISRFGAEVLRGTPREADLMVIAGTV 72
Query: 86 CNKMAPALRKVYDQMTEPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYIPGCPPT 145
KMAP++ ++Y+QM EPKWVISMGSCAN GG Y YSVV+G ++I+PVDVYIPGCPP
Sbjct: 73 FKKMAPSILRLYEQMAEPKWVISMGSCANSGGMYDV-YSVVQGVNQILPVDVYIPGCPPR 131
Query: 146 AEALL 150
EA L
Sbjct: 132 PEAFL 136
>gnl|CDD|236965 PRK11742, PRK11742, bifunctional NADH:ubiquinone oxidoreductase
subunit C/D; Provisional.
Length = 575
Score = 468 bits (1206), Expect = e-158
Identities = 199/561 (35%), Positives = 304/561 (54%), Gaps = 67/561 (11%)
Query: 168 FEQLIDLCGIDYSIYNKNINSDNSNKNLRFAIVLHLLSLNYNWRLRVRVFAENNELPRLH 227
+ L DL GID + + F + HL+S+ N + ++V A + +
Sbjct: 47 YVMLFDLHGIDERLRTHREGLPAA----DFTVFYHLISIERNRDIMLKV-ALSENDLHVP 101
Query: 228 SITSLWSSANWYEREAFDLFGIFFDGHDDLRRLLTDYGFVGHPFRKDFPV---------- 277
+IT ++ +ANWYERE +D+FGI FDGH LRR+L + GHP RKD+P
Sbjct: 102 TITKIFPNANWYERETWDMFGITFDGHPHLRRILMPPTWEGHPLRKDYPARATEFDPFEL 161
Query: 278 ------IEIKSYK-------------------LNFGPQHPAAHGVLRLILELEGEVVRKA 312
+E+++ + LN GP HP+AHG R++L+L+GE +
Sbjct: 162 TKAKQDLEMEALRFKPEEWGMKRGTDNEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDC 221
Query: 313 DPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQY 372
P IG HR EK+ E++++ +PY DR+DY+ NE YV+A+EKL I +P R
Sbjct: 222 VPDIGYHHRGAEKMGERQSWHSYIPYTDRIDYLGGCMNEMPYVLAVEKLAGITVPDRVNV 281
Query: 373 IRVMFDEITRLLNHLMWIGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRP 432
IRVM E+ R+ +HL++IG+ D+GAM + +AF +R+ + D EA++G RMH A++R
Sbjct: 282 IRVMLSELFRINSHLLYIGTFIQDVGAMTPVFFAFTDRQKIYDVIEAITGFRMHPAWFRI 341
Query: 433 GGVYRDLPEIMPQYKSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTD 492
GGV DLP +R + +F + PK +DEYE
Sbjct: 342 GGVAHDLPR-------------------GWDR------LLREFLDWMPKRLDEYEKAALR 376
Query: 493 NRIWKQRLVGIGVVSPERALSMGFTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNG 552
N I K R G+ + + AL G TG LR +G+ +D+RK +PY Y +F++P+G NG
Sbjct: 377 NSILKGRTQGVAAYNAKEALEWGVTGAGLRATGIDFDVRKARPYSGYENFDFEVPVGGNG 436
Query: 553 DSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHF 612
D YDR +V++EEMRQS +II+QC+ + GP +++ T P + ++E LI HF
Sbjct: 437 DCYDRVMVKVEEMRQSLRIIEQCLDNMPE--GPFKADHPLTTPPPKERTLQHIETLITHF 494
Query: 613 KLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGH 672
+ G +P E + +E KG YL SDG+ YR +IR+P FAHLQ + +I G
Sbjct: 495 LQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQQIPSVIRGS 554
Query: 673 MISDVVTIIGTQDIVFGEIDR 693
++SD++ +G+ D V ++DR
Sbjct: 555 LVSDLIVYLGSIDFVMSDVDR 575
>gnl|CDD|183437 PRK12322, PRK12322, NADH dehydrogenase subunit D; Provisional.
Length = 366
Score = 420 bits (1081), Expect = e-142
Identities = 161/409 (39%), Positives = 239/409 (58%), Gaps = 51/409 (12%)
Query: 285 LNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDY 344
LN GPQHP+ HGV RL+L+++GE++ +A P IG LHR TEKLAE Y Q +PY DR+DY
Sbjct: 9 LNVGPQHPSTHGVFRLVLKIDGEIIVEATPVIGYLHRGTEKLAESLQYTQIIPYTDRMDY 68
Query: 345 VSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLL 404
+S M N + Y A+E ++ +++P RA+Y+RV+ E+ R+ +HL+W G++ LDIGA+ L
Sbjct: 69 LSAMTNNYVYCHAVETMMGLEVPERAEYLRVIAMELGRIASHLVWWGTYLLDIGAVSPFL 128
Query: 405 YAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENR 464
YAFRERE +++ + GAR+ Y R GGV D P+
Sbjct: 129 YAFREREMIINLLNELCGARLTFNYMRIGGVKWDAPD----------------------- 165
Query: 465 QGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGS 524
++ +++F + + Y L+T N I+ R+ G+G+ S E A+S +G LR +
Sbjct: 166 --GWIEKVKEFVPYMREQLAGYHDLVTGNEIFLNRVKGVGIYSAEEAISYSLSGVNLRCT 223
Query: 525 GVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKG 584
GV WDLRK +PY IY+ +FDIP+G GD +DRY+ R++E+ QS KII+Q ++ G
Sbjct: 224 GVNWDLRKDEPYSIYDRFDFDIPVGSVGDCWDRYVCRMQEIEQSLKIIEQAVEQFPKE-G 282
Query: 585 PVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSD 644
PV++ KI P GE Y +E P+GE G Y+ SD
Sbjct: 283 PVLAKVPKIIKA-------------------------PKGEAYVRIESPRGEIGCYIASD 317
Query: 645 GANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
G KPYR+K R P F +LQ L +++ G I++++ I+G+ DIV GE+D
Sbjct: 318 GKKKPYRLKFRRPSFYNLQILPKLLKGENIANLIAILGSIDIVLGEVDG 366
>gnl|CDD|215871 pfam00346, Complex1_49kDa, Respiratory-chain NADH dehydrogenase, 49
Kd subunit.
Length = 272
Score = 372 bits (956), Expect = e-125
Identities = 158/302 (52%), Positives = 201/302 (66%), Gaps = 34/302 (11%)
Query: 396 DIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNK 455
D+GA+ + F ERE L+D YEAVSGARMHAAY+R GGV +DLP
Sbjct: 1 DVGALTPFFWIFEEREKLMDFYEAVSGARMHAAYFRIGGVAQDLPY-------------- 46
Query: 456 ATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMG 515
+D + +F + F K +DEYE LLT NRI+K RL G+G V+ E AL+ G
Sbjct: 47 -----------GWMDDLLEFCDYFLKRVDEYEELLTQNRIFKLRLRGVGFVTAEDALNWG 95
Query: 516 FTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQC 575
+G MLRGSG++WDLRK QPYE Y+ +FD+P+G NGD YDRYL+R+EEMRQS +II+QC
Sbjct: 96 LSGVMLRGSGIQWDLRKSQPYECYDQFDFDVPVGFNGDCYDRYLLRVEEMRQSLRIIQQC 155
Query: 576 IKWLRSNKGPVISNNN----KITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVE 631
+ NK P K+T P R MK +E LIHHFKL++ GF VP GE Y+ VE
Sbjct: 156 L-----NKMPGGPGEKVEAFKLTPPKRSEMKDFIETLIHHFKLYSPGFKVPAGESYAAVE 210
Query: 632 HPKGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEI 691
PKGE G+YLVSDG+ PYR KIR+PGFAHLQ L + GH+++D+V I+G+ DIVFGE+
Sbjct: 211 APKGELGVYLVSDGSTFPYRWKIRAPGFAHLQILDHLSRGHLLADLVAILGSIDIVFGEV 270
Query: 692 DR 693
DR
Sbjct: 271 DR 272
>gnl|CDD|180969 PRK07415, PRK07415, NAD(P)H-quinone oxidoreductase subunit H;
Validated.
Length = 394
Score = 360 bits (926), Expect = e-119
Identities = 170/412 (41%), Positives = 237/412 (57%), Gaps = 33/412 (8%)
Query: 285 LNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDY 344
LNFGP HP+ HGVLRLI+ L+GE V +P IG LHR EK+AE RT + +PY+ R DY
Sbjct: 13 LNFGPHHPSMHGVLRLIVTLDGEDVVDCEPVIGYLHRGMEKIAENRTNVMYVPYVSRWDY 72
Query: 345 VSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLL 404
+ M NE V A EKL NI +P RA YIRV+ E+ R+ NHL+W+G D+GA
Sbjct: 73 AAGMFNEAITVNAPEKLANIPVPKRASYIRVIMLELNRIANHLLWLGPFLADVGAQTPFF 132
Query: 405 YAFREREDLLDCYEAVSGARM-HAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNEN 463
Y FRERE + D +EA +G R+ + Y+R GGV DLP
Sbjct: 133 YIFREREMIYDLWEAATGQRLINNNYFRIGGVAADLPY---------------------- 170
Query: 464 RQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRG 523
L+ DF + F IDEYE L+T+N I+++R+ G+G +S E A++ G +GPMLR
Sbjct: 171 ---GWLEKCLDFCDYFGPKIDEYEKLITNNPIFRRRIEGLGTISREEAINWGLSGPMLRA 227
Query: 524 SGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNK 583
SGVKWDLRK YE Y+ ++D+ GD RY VRIEEMR+S KII+Q K +
Sbjct: 228 SGVKWDLRKVDHYECYDDFDWDVAWETEGDCLARYRVRIEEMRESVKIIRQACKGIPG-- 285
Query: 584 GPVISNNNKITSPARINMKSNMEDLIHHF--KLFTEGFYVPLGEIYSCVEHPKGEFGIYL 641
GP + K + + KS + + K F +P GE+Y +E KGE GI++
Sbjct: 286 GPYENLEAKRMAEGK---KSEWNGFDYQYVAKKVAPTFKIPNGELYVRLESGKGELGIFI 342
Query: 642 VSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+ P+R KIR+ F +LQ L ++ G ++D++ I+G+ D++ G +DR
Sbjct: 343 QGNNDVTPWRWKIRAADFNNLQILPHLLKGAKVADIMAILGSIDVIMGSVDR 394
>gnl|CDD|176960 CHL00017, ndhH, NADH dehydrogenase subunit 7.
Length = 393
Score = 345 bits (886), Expect = e-113
Identities = 170/420 (40%), Positives = 242/420 (57%), Gaps = 32/420 (7%)
Query: 276 PVIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQS 335
P +N GP HP+ HGVLRLI+ L+GE V +P +G LHR EK+AE RT +Q
Sbjct: 4 PATRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQY 63
Query: 336 LPYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSL 395
LPY+ R DY++ M E V A E+L NI++P RA YIRV+ E++R+ +HL+W+G
Sbjct: 64 LPYVTRWDYLATMFTEAITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMA 123
Query: 396 DIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNK 455
DIGA Y FRERE + D +EA +G RM Y+R GGV DLP
Sbjct: 124 DIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPY-------------- 169
Query: 456 ATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMG 515
+D DF + F + EY+ L+T N I+ +R+ G+G++ E A++ G
Sbjct: 170 -----------GWIDKCLDFCDYFLTGVAEYQKLITRNPIFLERVEGVGIIGGEEAINWG 218
Query: 516 FTGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQC 575
+GPMLR SG++WDLRK YE Y+ ++++ K GDS RYLVRI EM +S KII+Q
Sbjct: 219 LSGPMLRASGIQWDLRKVDHYECYDEFDWEVQWQKEGDSLARYLVRIGEMTESIKIIQQA 278
Query: 576 IKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHF--KLFTEGFYVPLGEIYSCVEHP 633
++ + GP N + R S D + F K + F + E+Y VE P
Sbjct: 279 LEGIPG--GPY--ENLEARRFDRE-KDSEWNDFEYRFISKKPSPTFELSKQELYVRVEAP 333
Query: 634 KGEFGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
KGE GI+L+ D + P+R KIR PGF +LQ L +++ ++D++TI+G+ DI+ GE+DR
Sbjct: 334 KGELGIFLIGDDSVFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gnl|CDD|235797 PRK06411, PRK06411, NADH dehydrogenase subunit B; Validated.
Length = 183
Score = 298 bits (764), Expect = 1e-97
Identities = 100/125 (80%), Positives = 112/125 (89%)
Query: 27 DKLINWTRTSSMWPMTFGLACCAIEMMHAGASRYDLDRFGIMFRPSPRQSDVMIVAGTLC 86
D L+NW R +S+WP+TFGLACCAIEMM AG SRYDLDRFG++FR SPRQ+D+MIVAGTL
Sbjct: 26 DDLVNWARKNSLWPLTFGLACCAIEMMAAGTSRYDLDRFGMVFRASPRQADLMIVAGTLT 85
Query: 87 NKMAPALRKVYDQMTEPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYIPGCPPTA 146
NKMAPALR++YDQM EPKWVISMGSCAN GG YHYSYSVV+G DRIVPVDVY+PGCPP
Sbjct: 86 NKMAPALRRLYDQMPEPKWVISMGSCANSGGMYHYSYSVVQGVDRIVPVDVYVPGCPPRP 145
Query: 147 EALLY 151
EALLY
Sbjct: 146 EALLY 150
>gnl|CDD|223454 COG0377, NuoB, NADH:ubiquinone oxidoreductase 20 kD subunit and
related Fe-S oxidoreductases [Energy production and
conversion].
Length = 194
Score = 277 bits (711), Expect = 1e-89
Identities = 98/135 (72%), Positives = 111/135 (82%)
Query: 27 DKLINWTRTSSMWPMTFGLACCAIEMMHAGASRYDLDRFGIMFRPSPRQSDVMIVAGTLC 86
DKLINW R +S+WP+TFGLACCA+EMM ASRYDL+RFG + R SPRQ+D+MIVAGTL
Sbjct: 27 DKLINWGRKNSLWPVTFGLACCAVEMMATFASRYDLERFGEVPRASPRQADLMIVAGTLT 86
Query: 87 NKMAPALRKVYDQMTEPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYIPGCPPTA 146
NKMAPALR+VYDQM EPKWVISMGSCAN GG Y SYSVV+G DR+VPVDVYIPGCPP
Sbjct: 87 NKMAPALRRVYDQMPEPKWVISMGSCANSGGMYWNSYSVVQGVDRVVPVDVYIPGCPPRP 146
Query: 147 EALLYDYYSTMKILR 161
EALLY + +R
Sbjct: 147 EALLYGILLLQEKIR 161
>gnl|CDD|233656 TIGR01957, nuoB_fam, NADH-quinone oxidoreductase, B subunit. This
model describes the B chain of complexes that resemble
NADH-quinone oxidoreductases. The electron acceptor is a
quinone, ubiquinone, in mitochondria and most bacteria,
including Escherichia coli, where the recommended gene
symbol is nuoB. The quinone is plastoquinone in
Synechocystis (where the chain is designated K) and in
chloroplast, where NADH may be replaced by NADPH. In the
methanogenic archaeal genus Methanosarcina, NADH is
replaced by F420H2 [Energy metabolism, Electron
transport].
Length = 145
Score = 271 bits (694), Expect = 7e-88
Identities = 97/126 (76%), Positives = 111/126 (88%), Gaps = 1/126 (0%)
Query: 27 DKLINWTRTSSMWPMTFGLACCAIEMMHAGASRYDLDRFG-IMFRPSPRQSDVMIVAGTL 85
DKL+NW R++S+WP+TFGLACCAIEMM GASRYDLDRFG +FR SPRQ+DVMIVAGT+
Sbjct: 8 DKLLNWGRSNSLWPLTFGLACCAIEMMATGASRYDLDRFGSEVFRASPRQADVMIVAGTV 67
Query: 86 CNKMAPALRKVYDQMTEPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYIPGCPPT 145
KMAPALR++YDQM EPKWVISMG+CAN GG +H SYSVV+G DRIVPVDVYIPGCPP
Sbjct: 68 TKKMAPALRRLYDQMPEPKWVISMGACANSGGMFHTSYSVVQGVDRIVPVDVYIPGCPPR 127
Query: 146 AEALLY 151
EAL+Y
Sbjct: 128 PEALIY 133
>gnl|CDD|225800 COG3261, HycE, Ni,Fe-hydrogenase III large subunit [Energy
production and conversion].
Length = 382
Score = 227 bits (582), Expect = 3e-68
Identities = 115/417 (27%), Positives = 188/417 (45%), Gaps = 52/417 (12%)
Query: 277 VIEIKSYKLNFGPQHPAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSL 336
+++ GP HP L ++GE + AD +G +HR EK+AE Y ++L
Sbjct: 3 KGGEGEFEIPVGPVHPGLIEPGHFRLFVDGEKIVDADIRLGYVHRGIEKIAEGLPYNKAL 62
Query: 337 PYMDRLDYVSMMCNEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLD 396
+R+ + + A+V+A+E L I++P RAQYIR + E+ R+ +HL+ +G D
Sbjct: 63 FLAERVCGICSFAHAVAFVLAVEDALGIEVPERAQYIRAIILELERIHSHLLNLGLLCHD 122
Query: 397 IGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKA 456
+G + FR RE ++ E ++G R+ GGV RD+ E +
Sbjct: 123 VGFETGFMQFFRLREKVMRLIELLTGNRVLYGLNVIGGVRRDILESDLE----------- 171
Query: 457 TKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGF 516
+L+ IED + + E +L + + RL G+GV+ E A +
Sbjct: 172 ----------QILELIEDIR----EEVKEIVEVLLSDPNIEDRLQGVGVLDKEDARKLSA 217
Query: 517 TGPMLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCI 576
GP R SG+ D R P Y+ L F++ + GD + R+LVRI+E+ +S K+I+Q +
Sbjct: 218 VGPTARASGIADDARIDHPPVYYDELPFEVIVRDEGDVFARFLVRIDEIFESLKLIEQAL 277
Query: 577 KWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGE 636
L G ++ + GE VE P+GE
Sbjct: 278 DNLPGGPGGLLREKLE---------------------------LKGHGEGLGRVEAPRGE 310
Query: 637 FGIYLVSDGANKPYRIKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
Y+ K R KIR+P +A+L +L M+ G+ ++D II + D + DR
Sbjct: 311 LVHYVKLGDNGKIKRWKIRTPSYANLPALKYMLRGNTVADAPLIIASLDPCYSCTDR 367
>gnl|CDD|237821 PRK14815, PRK14815, NADH dehydrogenase subunit B; Provisional.
Length = 183
Score = 202 bits (516), Expect = 2e-61
Identities = 80/125 (64%), Positives = 98/125 (78%), Gaps = 2/125 (1%)
Query: 27 DKLINWTRTSSMWPMTFGLACCAIEMMHAGASRYDLDRFGI-MFRPSPRQSDVMIVAGTL 85
D INW R +S+WPM GLACCAIE+M SR+D+ RFG + R SPRQ+DVMIVAGT+
Sbjct: 24 DAAINWIRKNSLWPMPMGLACCAIELMAVACSRFDISRFGAEVMRFSPRQADVMIVAGTV 83
Query: 86 CNKMAPALRKVYDQMTEPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYIPGCPPT 145
KMA A+R++YDQM EPKWVI+MG+CA+ GG Y SYSV++G DRI+PVDVYI GCPP
Sbjct: 84 TYKMALAVRRIYDQMPEPKWVIAMGACASSGGMYR-SYSVLQGVDRILPVDVYISGCPPR 142
Query: 146 AEALL 150
EA+L
Sbjct: 143 PEAIL 147
>gnl|CDD|237822 PRK14819, PRK14819, NADH dehydrogenase subunit B; Provisional.
Length = 264
Score = 204 bits (519), Expect = 1e-60
Identities = 79/126 (62%), Positives = 99/126 (78%), Gaps = 1/126 (0%)
Query: 27 DKLINWTRTSSMWPMTFGLACCAIEMMHAGASRYDLDRFGI-MFRPSPRQSDVMIVAGTL 85
++ NW R SS+WPM FGLACCAIEMM G SRYDL RFG +FR SPRQ+D+MIVAGT+
Sbjct: 22 NRFYNWGRRSSVWPMAFGLACCAIEMMATGLSRYDLARFGAELFRASPRQADLMIVAGTV 81
Query: 86 CNKMAPALRKVYDQMTEPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYIPGCPPT 145
KMAP + ++Y+QM EP++VISMG+CA GG + Y+V+RG D ++PVDVYIPGCPP
Sbjct: 82 TKKMAPQVVRLYNQMPEPRYVISMGACATSGGPFRDGYNVLRGIDLLIPVDVYIPGCPPR 141
Query: 146 AEALLY 151
EALL+
Sbjct: 142 PEALLH 147
>gnl|CDD|173274 PRK14813, PRK14813, NADH dehydrogenase subunit B; Provisional.
Length = 189
Score = 198 bits (504), Expect = 2e-59
Identities = 79/125 (63%), Positives = 100/125 (80%), Gaps = 1/125 (0%)
Query: 27 DKLINWTRTSSMWPMTFGLACCAIEMMHAGASRYDLDRFGIMFRPSPRQSDVMIVAGTLC 86
D ++NW R SS+WPM FGLACCAIEMM AS YDL+RFGI R SPRQSD+MIVAGT+
Sbjct: 19 DNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRSSPRQSDLMIVAGTVT 78
Query: 87 NKMAPALRKVYDQMTEPKWVISMGSCANGGG-YYHYSYSVVRGCDRIVPVDVYIPGCPPT 145
KMA + ++Y+QM EP++V+SMGSC+N GG Y+ + Y V++G DRI+PVDVY+PGCPP
Sbjct: 79 MKMAERVVRLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVLKGVDRIIPVDVYVPGCPPR 138
Query: 146 AEALL 150
EAL+
Sbjct: 139 PEALI 143
>gnl|CDD|173279 PRK14818, PRK14818, NADH dehydrogenase subunit B; Provisional.
Length = 173
Score = 196 bits (500), Expect = 4e-59
Identities = 75/124 (60%), Positives = 91/124 (73%)
Query: 27 DKLINWTRTSSMWPMTFGLACCAIEMMHAGASRYDLDRFGIMFRPSPRQSDVMIVAGTLC 86
D LIN R SS++ +TFGLACC IE+M G R D+ RFG + R SPRQ+D MIVAGTL
Sbjct: 22 DNLINLARASSLYYLTFGLACCGIELMQTGGPRADVMRFGAIPRASPRQADFMIVAGTLT 81
Query: 87 NKMAPALRKVYDQMTEPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYIPGCPPTA 146
KMA R +YDQM EPK+VISMGSC+N GG + YSV +G D+++PVDVY+PGCPP
Sbjct: 82 YKMAERARLLYDQMPEPKYVISMGSCSNCGGLFQLGYSVCKGVDKVIPVDVYVPGCPPRP 141
Query: 147 EALL 150
EAL
Sbjct: 142 EALT 145
>gnl|CDD|235691 PRK06074, PRK06074, NADH dehydrogenase subunit C; Provisional.
Length = 189
Score = 183 bits (467), Expect = 5e-54
Identities = 66/126 (52%), Positives = 80/126 (63%), Gaps = 13/126 (10%)
Query: 152 DYYSTMKILRDHVNFRFEQLIDLCGIDYSIYNKNINSDNSNKNLRFAIVLHLLSLNYNWR 211
+ LRD RFEQLIDL G+DY K RF +V HLLS +N R
Sbjct: 37 KILEVLTFLRDDPELRFEQLIDLTGVDYPERGK-----------RFEVVYHLLSYKHNVR 85
Query: 212 LRVRVFAENNELPRLHSITSLWSSANWYEREAFDLFGIFFDGHDDLRRLLTDYGFVGHPF 271
LRV+V A + P + S+ +W SANWYEREA+DL+GI F+GH DLRR+LTDYGF GHP
Sbjct: 86 LRVKVRAPED--PVVPSVVDIWPSANWYEREAYDLYGIVFEGHPDLRRILTDYGFEGHPL 143
Query: 272 RKDFPV 277
RKDFP+
Sbjct: 144 RKDFPL 149
>gnl|CDD|173277 PRK14816, PRK14816, NADH dehydrogenase subunit B; Provisional.
Length = 182
Score = 182 bits (462), Expect = 1e-53
Identities = 72/126 (57%), Positives = 96/126 (76%), Gaps = 1/126 (0%)
Query: 27 DKLINWTRTSSMWPMTFGLACCAIEMMHAGASRYDLDRFGI-MFRPSPRQSDVMIVAGTL 85
D LINW R++S+WP+TF +CC IE M GA+RYD+ RFG + R SPRQ+D+++V GT+
Sbjct: 32 DDLINWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFEVARASPRQADMIMVCGTI 91
Query: 86 CNKMAPALRKVYDQMTEPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYIPGCPPT 145
NKMAP L+++YDQM +PK+VI++G CA GG + SY V+ G D+I+PVDVYIPGCPP
Sbjct: 92 TNKMAPVLKRLYDQMADPKYVIAVGGCAVSGGPFKKSYHVLNGVDKILPVDVYIPGCPPR 151
Query: 146 AEALLY 151
EA Y
Sbjct: 152 PEAFYY 157
>gnl|CDD|184833 PRK14820, PRK14820, NADH dehydrogenase subunit B; Provisional.
Length = 180
Score = 165 bits (420), Expect = 1e-47
Identities = 66/126 (52%), Positives = 92/126 (73%), Gaps = 4/126 (3%)
Query: 27 DKLINWTRTSSMWPMTFGLACCAIEMMHAGASRYDLDRFGIMFRP--SPRQSDVMIVAGT 84
D +I R +S+WP+ F +CC IE M AS YDL RFG RP SPRQ+D+++V GT
Sbjct: 24 DSVIGLARKNSLWPLPFATSCCGIEFMATMASHYDLARFG-SERPSFSPRQADMLMVMGT 82
Query: 85 LCNKMAPALRKVYDQMTEPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYIPGCPP 144
+ KMAP L++VY QM EP+WV+++G+CA+ GG + +YSV++G DRI+PVDVY+PGCPP
Sbjct: 83 IAKKMAPVLKQVYLQMAEPRWVVAVGACASSGGIFD-TYSVLQGIDRIIPVDVYVPGCPP 141
Query: 145 TAEALL 150
E ++
Sbjct: 142 RPEQII 147
>gnl|CDD|214337 CHL00023, ndhK, NADH dehydrogenase subunit K.
Length = 225
Score = 165 bits (419), Expect = 6e-47
Identities = 65/123 (52%), Positives = 93/123 (75%), Gaps = 1/123 (0%)
Query: 29 LINWTRTSSMWPMTFGLACCAIEMMHAGASRYDLDRFGIMFRPSPRQSDVMIVAGTLCNK 88
L NW+R SS+WP+ +G +CC IE SR+D DR+G++ R SPRQ+D+++ AGT+ K
Sbjct: 25 LSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMK 84
Query: 89 MAPALRKVYDQMTEPKWVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDVYIPGCPPTAE 147
MAP+L ++Y+QM EPK+VI+MG+C GG + SYS VRG D+++PVDVY+PGCPP E
Sbjct: 85 MAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPE 144
Query: 148 ALL 150
A++
Sbjct: 145 AVI 147
>gnl|CDD|173275 PRK14814, PRK14814, NADH dehydrogenase subunit B; Provisional.
Length = 186
Score = 162 bits (410), Expect = 3e-46
Identities = 70/126 (55%), Positives = 93/126 (73%), Gaps = 4/126 (3%)
Query: 27 DKLINWTRTSSMWPMTFGLACCAIEMMHAGASRYDLDRFGIMFRPS--PRQSDVMIVAGT 84
+ +I W R+ S+WP F ACC IE M S YD+ RFG RPS PRQ+D+++V GT
Sbjct: 24 ESVIQWGRSFSLWPYPFATACCGIEYMSTACSDYDIARFGAE-RPSFSPRQADMILVLGT 82
Query: 85 LCNKMAPALRKVYDQMTEPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYIPGCPP 144
+ KMAP LR++YDQM EPK+VIS+G+CA+ GG +H +Y V++G DRI+PVDVY+PGCPP
Sbjct: 83 ITYKMAPVLRQIYDQMAEPKFVISVGACASSGGMFH-TYGVLQGVDRILPVDVYVPGCPP 141
Query: 145 TAEALL 150
EA+L
Sbjct: 142 RPEAIL 147
>gnl|CDD|173278 PRK14817, PRK14817, NADH dehydrogenase subunit B; Provisional.
Length = 181
Score = 157 bits (397), Expect = 2e-44
Identities = 66/147 (44%), Positives = 97/147 (65%), Gaps = 6/147 (4%)
Query: 28 KLINWTRTSSMWPMTFGLACCAIEMMHAGASRYDLDRFGIMF-RPSPRQSDVMIVAGTLC 86
K + W R S++ F ACC +E M ++RYD DRFG R SPRQ+D+++V GT+
Sbjct: 27 KSLGWARKYSLFTYPFVTACCGMEYMTMASARYDSDRFGAAMPRFSPRQADLLMVVGTVN 86
Query: 87 NKMAPALRKVYDQMTEPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYIPGCPPTA 146
K AP L++VY+QM +PKWV++ G CA+ GG+Y +Y+ V+G DRI+PVDVY+PGCPP
Sbjct: 87 CKQAPILQRVYEQMADPKWVMAFGVCASSGGFYD-NYATVQGIDRIIPVDVYVPGCPPRP 145
Query: 147 EALLYDYYSTMKILRDHVNFRFEQLID 173
E +L + +L+ + + +LID
Sbjct: 146 EQVL----DGIMLLQKKIQNQSHKLID 168
>gnl|CDD|233657 TIGR01961, NuoC_fam, NADH (or F420H2) dehydrogenase, subunit C.
This model describes the C subunit of the NADH
dehydrogenase complex I in bacteria, as well as many
instances of the corresponding mitochondrial subunit
(NADH dehydrogenase subunit 9) and of the F420H2
dehydrogenase in Methanosarcina. Complex I contains
subunits designated A-N. This C subunit often occurs as
a fusion protein with the D subunit. This model excludes
the NAD(P)H and plastoquinone-dependent form of
chloroplasts and [Energy metabolism, Electron
transport].
Length = 121
Score = 148 bits (377), Expect = 3e-42
Identities = 50/134 (37%), Positives = 72/134 (53%), Gaps = 15/134 (11%)
Query: 144 PTAEALLYDYYSTMKILRDHVNFRFEQLIDLCGIDYSIYNKNINSDNSNKNLRFAIVLHL 203
+ L+D FE L D+ G+DY RF +V HL
Sbjct: 1 LVVWIKKEQLLEVLTFLKDP-ALGFELLTDVSGVDYPKEK------------RFEVVYHL 47
Query: 204 LSLNYNWRLRVRVFAENNELPRLHSITSLWSSANWYEREAFDLFGIFFDGHDDLRRLLTD 263
LS+ N R+R++V ++ + S+TS++ +ANWYERE +D++GI FDGH DLRR+L
Sbjct: 48 LSIKKNRRIRLKVRLSEDDP--VPSLTSVFPTANWYERETYDMYGIVFDGHPDLRRILMP 105
Query: 264 YGFVGHPFRKDFPV 277
F GHP RKD+P+
Sbjct: 106 DDFEGHPLRKDYPL 119
>gnl|CDD|223921 COG0852, NuoC, NADH:ubiquinone oxidoreductase 27 kD subunit [Energy
production and conversion].
Length = 176
Score = 147 bits (374), Expect = 3e-41
Identities = 54/121 (44%), Positives = 75/121 (61%), Gaps = 15/121 (12%)
Query: 157 MKILRDHVNFRFEQLIDLCGIDYSIYNKNINSDNSNKNLRFAIVLHLLSLNYNWRLRVRV 216
+K L+D F+ L+DL G+DY + RF +V HLLS N R+RV+V
Sbjct: 44 LKALKDEG---FDHLLDLTGVDYPQETE-----------RFEVVYHLLSYKDNRRVRVKV 89
Query: 217 FAENNELPRLHSITSLWSSANWYEREAFDLFGIFFDGHDDLRRLLTDYGFVGHPFRKDFP 276
++ P + S+T +W +ANWYEREA+D+FGI F+GH DLRR+L + GHP RKDFP
Sbjct: 90 RLSEDD-PHVPSVTDIWPAANWYEREAYDMFGIVFEGHPDLRRILMPDDWEGHPLRKDFP 148
Query: 277 V 277
+
Sbjct: 149 L 149
>gnl|CDD|225799 COG3260, COG3260, Ni,Fe-hydrogenase III small subunit [Energy
production and conversion].
Length = 148
Score = 141 bits (357), Expect = 3e-39
Identities = 51/120 (42%), Positives = 75/120 (62%)
Query: 48 CAIEMMHAGASRYDLDRFGIMFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMTEPKWVI 107
C IE++ A + RYD +RFGI SPR +D+++V G + +M L+K Y+ M EPK VI
Sbjct: 22 CDIEILAALSPRYDAERFGIKVVNSPRHADILLVTGAVTRQMREPLKKAYEAMPEPKIVI 81
Query: 108 SMGSCANGGGYYHYSYSVVRGCDRIVPVDVYIPGCPPTAEALLYDYYSTMKILRDHVNFR 167
++G+CA GG + SYSV D+++PVDV IPGCPP EA+L + + L ++
Sbjct: 82 AVGACALSGGIFKDSYSVWGPVDKVIPVDVEIPGCPPRPEAILAGLVAALGKLEKKIHAE 141
>gnl|CDD|216271 pfam01058, Oxidored_q6, NADH ubiquinone oxidoreductase, 20 Kd
subunit.
Length = 122
Score = 125 bits (317), Expect = 5e-34
Identities = 41/114 (35%), Positives = 60/114 (52%), Gaps = 10/114 (8%)
Query: 48 CAIEMMHAGASRYDL----DRFGIMFRPSPR--QSDVMIVAGTLCNKMAPALRKVYDQMT 101
C+I ++ DL R+ I PR +DV++V G + K AL ++Y+
Sbjct: 4 CSISLLALHPPLLDLLDISLRYHITLMADPREEHADVLLVEGAVTRKPKEALERLYELAP 63
Query: 102 EPKWVISMGSCANGGG---YYHYSYSV-VRGCDRIVPVDVYIPGCPPTAEALLY 151
+ K VI++G+CA GG + SY V V +VPVD+ IPGCPP EA+L
Sbjct: 64 KAKAVIAVGTCAAYGGIPAAGNNSYGVGVGPVLEVVPVDINIPGCPPHPEAILG 117
>gnl|CDD|201159 pfam00329, Complex1_30kDa, Respiratory-chain NADH dehydrogenase, 30
Kd subunit.
Length = 103
Score = 121 bits (307), Expect = 7e-33
Identities = 47/119 (39%), Positives = 66/119 (55%), Gaps = 16/119 (13%)
Query: 155 STMKILRDHVNFRFEQLIDLCGIDYSIYNKNINSDNSNKNLRFAIVLHLLSLNYNWRLRV 214
+ L++ F++L DL G+DY RF +V HL SL R+R+
Sbjct: 1 EVARFLKED---GFDRLSDLTGVDYP------------DEGRFEVVYHLASLGDGERVRL 45
Query: 215 RVFAENNELPRLHSITSLWSSANWYEREAFDLFGIFFDGHDDLRRLLTDYGFVGHPFRK 273
+V ++ P + SIT ++ ANWYERE +D+FGI F+GH DLRRLL + GHP RK
Sbjct: 46 KVKLPRDD-PEIPSITDIFPGANWYEREVYDMFGIVFEGHPDLRRLLLPEDWPGHPLRK 103
>gnl|CDD|181115 PRK07785, PRK07785, NADH dehydrogenase subunit C; Provisional.
Length = 235
Score = 96.6 bits (241), Expect = 2e-22
Identities = 42/119 (35%), Positives = 66/119 (55%), Gaps = 11/119 (9%)
Query: 158 KILRDHVNFRFEQLIDLCGIDYSIYNKNINSDNSNKNLRFAIVLHLLSLNYNWRLRVRVF 217
+ LRD RFE + + G+ Y ++ + L V HL S+ +N R+R+ V
Sbjct: 105 QTLRDDPALRFELCLGVSGVHYP--------HDTGRELH--AVYHLTSITHNRRIRLEVA 154
Query: 218 AENNELPRLHSITSLWSSANWYEREAFDLFGIFFDGHDDLRRLLTDYGFVGHPFRKDFP 276
+ + P + S+ S++ + +W+ERE +D FGI FDGH L R+ +VGHP RKD+P
Sbjct: 155 VPDAD-PHIPSLVSVYPTNDWHERETYDFFGIVFDGHPALTRIEMPDDWVGHPQRKDYP 212
>gnl|CDD|181449 PRK08491, PRK08491, NADH dehydrogenase subunit C; Provisional.
Length = 263
Score = 95.9 bits (239), Expect = 5e-22
Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 16/125 (12%)
Query: 152 DYYSTMKILRDHVNFRFEQLIDLCGIDYSIYNKNINSDNSNKNLRFAIVLHLLSLNYNWR 211
D + +KIL+ + +E L ++ ID+ + F + LLS++ R
Sbjct: 67 DNFKVLKILK---HLGYECLSEMSAIDF------LAKKGG-----FEVFYQLLSMSKRKR 112
Query: 212 LRVRVFAENNELPRLHSITSLWSSANWYEREAFDLFGIFFDGHDDLRRLLTDYGFVGHPF 271
+RV+ F + E L S++ L+ SANW ERE +D+FGI + H L+R+L +VGHP
Sbjct: 113 VRVKCFLKEKE--ALQSVSFLFKSANWSEREMYDMFGIVINNHPYLKRILMPDDWVGHPL 170
Query: 272 RKDFP 276
K +P
Sbjct: 171 LKSYP 175
>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated.
Length = 430
Score = 98.1 bits (244), Expect = 9e-22
Identities = 45/123 (36%), Positives = 63/123 (51%), Gaps = 15/123 (12%)
Query: 153 YYSTMKILRDHVNFRFEQLIDLCGIDYSIYNKNINSDNSNKNLRFAIVLHLLSLNYNWRL 212
YY ++LR H F+ L +L G D+ + +HL S +
Sbjct: 316 YYEVAELLRFHEQLAFDYLSELHGTDFVT--------------HMEVYVHLYSYGKRQSV 361
Query: 213 RVRVFAENNELPRLHSITSLWSSANWYEREAFDLFGIFFDGHDDLRRLLTDYGFVGHPFR 272
V+V + E P++ S+T LW ANW EREA+DL GI F GH +L R+L +VGHP R
Sbjct: 362 AVKVKLDR-EAPQVESVTPLWKGANWPEREAYDLLGIVFKGHPNLSRILLPDDWVGHPLR 420
Query: 273 KDF 275
KD+
Sbjct: 421 KDY 423
>gnl|CDD|183557 PRK12494, PRK12494, NADH dehydrogenase subunit J; Provisional.
Length = 172
Score = 70.4 bits (173), Expect = 4e-14
Identities = 27/63 (42%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 213 RVRVFAENNELPRLHSITSLWSSANWYEREAFDLFGIFFDGHDDLRRLLTDYGFVGHPFR 272
R++VF + PR+ S+ +W A+W ERE +D++GI F+GH +L+R+L +VG P R
Sbjct: 99 RLKVFL-PRDDPRVPSVYWIWKGADWQERETYDMYGINFEGHPNLKRILMPEDWVGWPLR 157
Query: 273 KDF 275
KD+
Sbjct: 158 KDY 160
>gnl|CDD|176955 CHL00012, ndhJ, NADH dehydrogenase subunit J.
Length = 158
Score = 61.3 bits (149), Expect = 5e-11
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 198 AIVLHLLSLNYNW----RLRVRVFAENNELPRLHSITSLWSSANWYEREAFDLFGIFFDG 253
A V HL + Y + ++VF PR+ S+ +W SA++ ERE++D+ GI +D
Sbjct: 66 ASVYHLTRIQYGVDQPEEVCIKVFVPRKN-PRIPSVFWVWKSADFQERESYDMLGISYDN 124
Query: 254 HDDLRRLLTDYGFVGHPFRKDF 275
H L+R+L ++G P RKD+
Sbjct: 125 HPRLKRILMPESWIGWPLRKDY 146
>gnl|CDD|225801 COG3262, HycE, Ni,Fe-hydrogenase III component G [Energy production
and conversion].
Length = 165
Score = 55.5 bits (134), Expect = 6e-09
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 15/85 (17%)
Query: 212 LRVRVFAENNELPRLHSITSLWSSANWYEREAFDLFGIFFDGHDDLRRLL--TDYGFVGH 269
++V V A+N E P S+ ++ +A W+ERE D++G+ G D RRL+ D+ +
Sbjct: 89 VKVSVPADNPEFP---SVAPIFPAALWFEREIRDMYGLDPVGAPDPRRLVLPDDWPEGIY 145
Query: 270 PFRKDFPVIEIKSYKLNFGPQHPAA 294
P RKD Y P+ P
Sbjct: 146 PLRKDA-----MDY-----PERPVP 160
>gnl|CDD|224852 COG1941, FrhG, Coenzyme F420-reducing hydrogenase, gamma subunit
[Energy production and conversion].
Length = 247
Score = 48.1 bits (115), Expect = 4e-06
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 22/95 (23%)
Query: 77 DVMIVAGTLCNKMAPALRKVYDQMTEPKWVISMGSCANGGG--------------YYHYS 122
DV +V G++C+ L V + + K V+++GSCA GG +
Sbjct: 53 DVALVEGSVCD--EEELELVKELREKAKIVVALGSCAVTGGVQGLRNKSGEELLRPVYGD 110
Query: 123 YSVVRGCDRIVP------VDVYIPGCPPTAEALLY 151
+ +VP VD IPGCPP+ E +
Sbjct: 111 AKSTFNEESVVPLGEVIDVDYAIPGCPPSPEEIAR 145
>gnl|CDD|132337 TIGR03294, FrhG, coenzyme F420 hydrogenase, subunit gamma. This
model represents that clade of F420-dependent
hydrogenases (FRH) beta subunits found exclusively and
universally in methanogenic archaea. This protein
contains two 4Fe-4S cluster binding domains (pfam00037)
and scores above the trusted cutoff to model pfam01058
for the "NADH ubiquinone oxidoreductase, 20 Kd subunit"
family.
Length = 228
Score = 47.5 bits (113), Expect = 6e-06
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 17/86 (19%)
Query: 77 DVMIVAGTLCNKMAPALRKVYDQMTEPKWVISMGSCANGGGYYHYSYSVVRGCDRIVP-- 134
DV +V G++C + +L ++ + + K V+++G+CA G + YS RG + P
Sbjct: 52 DVALVEGSVCLQDEHSLEEIKELREKAKVVVALGACAATGNFTRYS----RGGQQAQPQH 107
Query: 135 -----------VDVYIPGCPPTAEAL 149
VD+ IPGCPP+ EA+
Sbjct: 108 ESFVPITDVIDVDLAIPGCPPSPEAI 133
>gnl|CDD|180638 PRK06602, PRK06602, NADH:ubiquinone oxidoreductase subunit A;
Validated.
Length = 121
Score = 44.5 bits (106), Expect = 1e-05
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 1 MGRILGPYKPNPQKNSPYECGFKEFGD 27
G++LGP P+ +KNSPYE GF+ FGD
Sbjct: 28 AGKLLGPRAPDREKNSPYESGFEAFGD 54
>gnl|CDD|223908 COG0838, NuoA, NADH:ubiquinone oxidoreductase subunit 3 (chain A)
[Energy production and conversion].
Length = 123
Score = 42.6 bits (101), Expect = 8e-05
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 1 MGRILGPYKPNPQKNSPYECGFKEFGD 27
+ ++LGP +PNP+K SPYECG FG
Sbjct: 28 LSKLLGPRRPNPEKLSPYECGNPPFGG 54
>gnl|CDD|225798 COG3259, FrhA, Coenzyme F420-reducing hydrogenase, alpha subunit
[Energy production and conversion].
Length = 441
Score = 39.3 bits (92), Expect = 0.005
Identities = 41/173 (23%), Positives = 63/173 (36%), Gaps = 41/173 (23%)
Query: 295 HGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCN---- 350
H + + ++ +G +V A HI R EK + P + V +C
Sbjct: 16 HAKVTIEVDDDG-IVEDARFHI-TEVRGFEKFVLGK------PIEEAPRIVPRICGICPA 67
Query: 351 EH--AYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSL------------- 395
H A V A E L ++IP A+ +R E+ + N I SH+L
Sbjct: 68 SHHLASVEAAEAALGVEIPEEAEKLR----ELLNIGNI---IESHALHLYFLAAPDFLGP 120
Query: 396 ------DIGAMG-VLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDLPE 441
I + A R R+ E + G +H PGGV ++L E
Sbjct: 121 PDADPGMIDEYPELAKEAIRLRKIGQTIVEVLGGKAIHPVNAVPGGVAKNLSE 173
>gnl|CDD|177117 MTH00042, ND3, NADH dehydrogenase subunit 3; Validated.
Length = 116
Score = 36.5 bits (85), Expect = 0.008
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 1 MGRILGPYKPNPQKNSPYECGF 22
G L P+ +K+SPYECGF
Sbjct: 21 AGHFLPSRSPDLEKSSPYECGF 42
>gnl|CDD|177175 MTH00113, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 114
Score = 34.1 bits (79), Expect = 0.056
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 9 KPNPQKNSPYECGFKEFGD 27
KP+ +K SPYECGF G
Sbjct: 28 KPDNEKLSPYECGFDPLGS 46
>gnl|CDD|223451 COG0374, HyaB, Ni,Fe-hydrogenase I large subunit [Energy production
and conversion].
Length = 545
Score = 36.2 bits (84), Expect = 0.063
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 296 GVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYV 355
G LR+ +E+E V+ A G L R E + + R + R+ V + A V
Sbjct: 14 GHLRIEVEVEDGVITDAWSS-GTLFRGFEIILKGRDPRDAWAITQRICGVCTTSHALASV 72
Query: 356 MAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWI 390
A+E L I +P+ A IR + + +H++
Sbjct: 73 RALEDALGITVPVNALLIRNIMQAALFVHDHIVHF 107
>gnl|CDD|182482 PRK10467, PRK10467, hydrogenase 2 large subunit; Provisional.
Length = 567
Score = 35.9 bits (83), Expect = 0.069
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 296 GVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAYV 355
G LR+ E+E VV KA G + R E++ + R + + R+ V + + V
Sbjct: 15 GHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHAISSV 73
Query: 356 MAIEKLLNIKIPIRAQYIRVM 376
A E LNI +P+ AQYIR +
Sbjct: 74 RAAESALNIDVPVNAQYIRNI 94
>gnl|CDD|215958 pfam00507, Oxidored_q4, NADH-ubiquinone/plastoquinone
oxidoreductase, chain 3.
Length = 102
Score = 31.3 bits (72), Expect = 0.33
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 1 MGRILGPYKPNP-QKNSPYECGFKEFGD 27
+ +L P KP+ +K SPYECGF G
Sbjct: 9 LSFLLSPKKPSDREKLSPYECGFDPLGK 36
>gnl|CDD|169084 PRK07756, PRK07756, NADH dehydrogenase subunit A; Validated.
Length = 122
Score = 31.6 bits (72), Expect = 0.40
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 1 MGRILGPYKPNPQKNSPYECGFKEFGD 27
+GR+L P KP+ K + YE G + F D
Sbjct: 29 LGRMLRPNKPSAAKATTYESGIEPFHD 55
>gnl|CDD|164603 MTH00030, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 123
Score = 31.4 bits (71), Expect = 0.57
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 5 LGPYKPNPQKNSPYECGFKEFG 26
+G KP+ +K+S YECGF FG
Sbjct: 34 IGLTKPDSEKSSIYECGFDPFG 55
>gnl|CDD|177128 MTH00055, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 118
Score = 30.8 bits (70), Expect = 0.82
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 4 ILGPYKPNPQKNSPYECGFKEFG 26
I+G +P+ +K S YECGF F
Sbjct: 28 IVGVKQPDSEKVSVYECGFDPFE 50
>gnl|CDD|177194 MTH00136, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 116
Score = 30.3 bits (69), Expect = 1.2
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 10 PNPQKNSPYECGFKEFG 26
P+ +K SPYECGF G
Sbjct: 30 PDHEKLSPYECGFDPLG 46
>gnl|CDD|214433 MTH00148, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 117
Score = 29.8 bits (68), Expect = 1.4
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 13 QKNSPYECGFKEFG 26
+K+SP+ECGF
Sbjct: 34 EKSSPFECGFDPIS 47
>gnl|CDD|99846 cd06143, PAN2_exo, DEDDh 3'-5' exonuclease domain of the eukaryotic
exoribonuclease PAN2. PAN2 is the catalytic subunit of
poly(A) nuclease (PAN), a Pab1p-dependent 3'-5'
exoribonuclease which plays an important role in the
posttranscriptional maturation of pre-mRNAs. PAN
catalyzes the deadenylation of poly(A) tails, which are
initially synthesized to default lengths of 70 to 90, to
mRNA-specific lengths of 55 to 71. Pab1p and PAN also
play a role in the export and decay of mRNA. PAN2
contains a DEDDh-type DnaQ-like 3'-5' exonuclease domain
with three conserved sequence motifs termed ExoI, ExoII
and ExoIII, with a specific Hx(4)D conserved pattern at
ExoIII. These motifs are clustered around the active
site and contain four conserved acidic residues that
serve as ligands for the two metal ions required for
catalysis.
Length = 174
Score = 30.7 bits (70), Expect = 1.5
Identities = 15/24 (62%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 259 RLLTDYG--FVGHPFRKDFPVIEI 280
RLL D G FVGH KDF VI I
Sbjct: 96 RLLVDLGCIFVGHGLAKDFRVINI 119
>gnl|CDD|164592 MTH00018, ND3, NADH dehydrogenase subunit 3; Validated.
Length = 113
Score = 29.6 bits (67), Expect = 2.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 4 ILGPYKPNPQKNSPYECGFKEFG 26
LG +P+ +K S YECGF FG
Sbjct: 23 FLGVKQPDREKVSAYECGFDPFG 45
>gnl|CDD|146336 pfam03643, Vps26, Vacuolar protein sorting-associated protein 26.
Vacuolar protein sorting-associated protein (Vps) 26 is
one of around 50 proteins involved in protein
trafficking. In particular, Vps26 assembles into a
retromer complex with at least four other proteins Vps5,
Vps17, Vps29 and Vps35. This family also contains Down
syndrome critical region 3/A.
Length = 275
Score = 30.9 bits (70), Expect = 2.2
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 21/98 (21%)
Query: 534 QPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKGPVISNNNKI 593
+PYE Y +N + RY +R+ +R+ I K+ W+ + +NN+
Sbjct: 108 KPYESYIGVNVRL----------RYFLRVTVVRRLTDITKEKDFWVHNFTTYPETNNS-- 155
Query: 594 TSPARINMKSNMEDLIHHFKLFTEGFY----VPLGEIY 627
I M+ +ED +H + + Y V +G+IY
Sbjct: 156 -----IKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIY 188
>gnl|CDD|177141 MTH00069, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 114
Score = 29.2 bits (66), Expect = 3.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 9 KPNPQKNSPYECGFKEFG 26
P+ +K SPYECGF G
Sbjct: 27 NPDSEKLSPYECGFDPLG 44
>gnl|CDD|215883 pfam00374, NiFeSe_Hases, Nickel-dependent hydrogenase.
Length = 502
Score = 30.5 bits (69), Expect = 3.1
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 353 AYVMAIEKLLNIKIPIRAQYIR 374
A V A+E L IKIP A+ IR
Sbjct: 33 ASVRAVEDALGIKIPKNARLIR 54
>gnl|CDD|151298 pfam10849, DUF2654, Protein of unknown function (DUF2654). Some
members in this family of proteins are annotated as
a-gt.4 however currently no function is known.
Length = 70
Score = 28.1 bits (63), Expect = 3.2
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 349 CNEHAYVMAIEKLLNI-KIPIRAQYIRVMFDEITR 382
N+ YV AI+KL +I K P+ + + M+ E +R
Sbjct: 30 NNKEQYVYAIKKLRDIYKQPLNDELLETMW-ETSR 63
>gnl|CDD|235690 PRK06073, PRK06073, NADH dehydrogenase subunit A; Validated.
Length = 124
Score = 29.2 bits (66), Expect = 3.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 1 MGRILGPYKPNPQKNSPYECGFKEFGD 27
+ +++ P KP P K S YE G G
Sbjct: 27 LLKLILPSKPTPLKVSRYEAGNPPTGP 53
>gnl|CDD|236433 PRK09259, PRK09259, putative oxalyl-CoA decarboxylase; Validated.
Length = 569
Score = 30.0 bits (68), Expect = 4.5
Identities = 13/22 (59%), Positives = 13/22 (59%), Gaps = 8/22 (36%)
Query: 419 AVSGARMHAAYYRPGGVYRDLP 440
AVSG RPGGVY DLP
Sbjct: 156 AVSG--------RPGGVYLDLP 169
>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the
Serine/Threonine Kinase, p38alpha Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs),
p38alpha subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38alpha subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38alpha, also called MAPK14, is expressed in
most tissues and is the major isoform involved in the
immune and inflammatory response. It is the central p38
MAPK involved in myogenesis. It plays a role in
regulating cell cycle check-point transition and
promoting cell differentiation. p38alpha also regulates
cell proliferation and death through crosstalk with the
JNK pathway. Its substrates include MAPK activated
protein kinase 2 (MK2), MK5, and the transcription
factors ATF2 and Mitf.
Length = 345
Score = 30.0 bits (67), Expect = 4.8
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 11/67 (16%)
Query: 298 LRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDY--VSMMCNEHAYV 355
L+LIL L G P LL + + + A R Y+QSL M ++++ V + N A V
Sbjct: 227 LKLILRLVGT------PGAELLKKISSESA--RNYIQSLTQMPKMNFANVFIGANPLA-V 277
Query: 356 MAIEKLL 362
+EK+L
Sbjct: 278 DLLEKML 284
>gnl|CDD|214456 MTH00203, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 112
Score = 28.3 bits (64), Expect = 5.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 5 LGPYKPNPQKNSPYECGFKEFG 26
L P+ +K SPYECGF G
Sbjct: 25 LPKVNPDGEKLSPYECGFDPLG 46
>gnl|CDD|177217 MTH00161, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 113
Score = 27.8 bits (63), Expect = 8.6
Identities = 7/9 (77%), Positives = 9/9 (100%)
Query: 14 KNSPYECGF 22
K+SP+ECGF
Sbjct: 33 KSSPFECGF 41
>gnl|CDD|221193 pfam11735, CAP59_mtransfer, Cryptococcal mannosyltransferase 1.
The capsule of pathogenic fungi is a complex
polysaccharide whose formation is determined by a number
of enzymes including, most importantly,
alpha-1,3-mannosyltransferase 1, EC:2.4.1.-.
Length = 244
Score = 28.8 bits (65), Expect = 9.3
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 153 YYSTMKILRDHVNFRFEQLIDLCGIDY---SIYNKNINSDNSNKNLR-FAIVLHLLSLNY 208
+++ +IL D +LI L G + SIY ++ + D + + LR L L +
Sbjct: 9 HWNNEEILPDLWGAAVVELIRLLGPENVFVSIY-ESGSGDGTKEALRALDPELDALGVRR 67
Query: 209 NWRLRVRV-FAENNELPRLHSITSL 232
+ L E++ PRL I L
Sbjct: 68 SITLSEITHLDEDSLPPRLRRIPYL 92
>gnl|CDD|216259 pfam01039, Carboxyl_trans, Carboxyl transferase domain. All of the
members in this family are biotin dependent
carboxylases. The carboxyl transferase domain carries
out the following reaction; transcarboxylation from
biotin to an acceptor molecule. There are two recognised
types of carboxyl transferase. One of them uses acyl-CoA
and the other uses 2-oxoacid as the acceptor molecule of
carbon dioxide. All of the members in this family
utilise acyl-CoA as the acceptor molecule.
Length = 487
Score = 29.1 bits (66), Expect = 9.3
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 11/58 (18%)
Query: 103 PKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVD----VYIPGCPPTAEALLYDYYST 156
P+ + G CA GG Y D I+ V +++ G P + + + ++
Sbjct: 131 PQISLVTGPCAGGGAY------SPALGDFIIMVKGTSPMFLTG-PDVVKKVTGEEVTS 181
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.141 0.436
Gapped
Lambda K H
0.267 0.0758 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 37,084,302
Number of extensions: 3775732
Number of successful extensions: 3228
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3173
Number of HSP's successfully gapped: 80
Length of query: 693
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 589
Effective length of database: 6,324,786
Effective search space: 3725298954
Effective search space used: 3725298954
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (27.6 bits)