RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5227
(693 letters)
>d2fug41 e.18.1.2 (4:35-409) NADH-quinone oxidoreductase chain 4,
Nqo4 {Thermus thermophilus [TaxId: 274]}
Length = 375
Score = 370 bits (951), Expect = e-123
Identities = 178/402 (44%), Positives = 245/402 (60%), Gaps = 27/402 (6%)
Query: 292 PAAHGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNE 351
P+ HGVLRL++ L GE V + PHIG LH EK E RTYLQ++ Y R+DY+ ++
Sbjct: 1 PSTHGVLRLMVTLSGEEVLEVVPHIGYLHTGFEKTMEHRTYLQNITYTPRMDYLHSFAHD 60
Query: 352 HAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLLYAFRERE 411
AY +A+EKLL +P RA+ IRV+ +E++RL +HL+++G+ LD+GA+ YAFRERE
Sbjct: 61 LAYALAVEKLLGAVVPPRAETIRVILNELSRLASHLVFLGTGLLDLGALTPFFYAFRERE 120
Query: 412 DLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENRQGSLLDF 471
+LD +E V+G R H Y R GGV DLPE
Sbjct: 121 TILDLFEWVTGQRFHHNYIRIGGVKEDLPEEFV-------------------------PE 155
Query: 472 IEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGSGVKWDLR 531
++ P IDEYE L ++ I+ +R G+GV+ PE A+ +G TG LR SGV +D+R
Sbjct: 156 LKKLLEVLPHRIDEYEALFAESPIFYERARGVGVIPPEVAIDLGLTGGSLRASGVNYDVR 215
Query: 532 KKQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQCIKWLRSNKGPVISNNN 591
K PY Y FD+P+G+ GD +DR LVRI EMR+S KIIKQ R GPV N
Sbjct: 216 KAYPYSGYETYTFDVPLGERGDVFDRMLVRIREMRESVKIIKQA--LERLEPGPVRDPNP 273
Query: 592 KITSPARINMKSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKPYR 651
+IT P R ++++ME +I+HFK +TEGF+ P GE+Y E +GE G Y+VSDG + PYR
Sbjct: 274 QITPPPRHLLETSMEAVIYHFKHYTEGFHPPKGEVYVPTESARGELGYYIVSDGGSMPYR 333
Query: 652 IKIRSPGFAHLQSLSEMISGHMISDVVTIIGTQDIVFGEIDR 693
+K+R+P F +LQSL G + D+V II + D V G++DR
Sbjct: 334 VKVRAPSFVNLQSLPYACKGEQVPDMVAIIASLDPVMGDVDR 375
>d2fug61 e.19.1.2 (6:15-175) NAD-quinone oxidoreductase chain 6,
Nqo6 {Thermus thermophilus [TaxId: 274]}
Length = 161
Score = 195 bits (497), Expect = 1e-59
Identities = 77/126 (61%), Positives = 102/126 (80%), Gaps = 2/126 (1%)
Query: 27 DKLINWTRTSSMWPMTFGLACCAIEMMHAGASRYDLDRFGI-MFRPSPRQSDVMIVAGTL 85
+KL+ W R++S+WP TFGLACCAIEMM + +R DL RFG +FR SPRQ+DVMIVAG L
Sbjct: 11 EKLVAWGRSNSLWPATFGLACCAIEMMASTDARNDLARFGSEVFRASPRQADVMIVAGRL 70
Query: 86 CNKMAPALRKVYDQMTEPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYIPGCPPT 145
KMAP +R+V++QM +PKWVISMG+CA+ GG ++ +Y++V+ D +VPVDVY+PGCPP
Sbjct: 71 SKKMAPVMRRVWEQMPDPKWVISMGACASSGGMFN-NYAIVQNVDSVVPVDVYVPGCPPR 129
Query: 146 AEALLY 151
EAL+Y
Sbjct: 130 PEALIY 135
>d1cc1l_ e.18.1.1 (L:) Nickel-iron hydrogenase, large subunit
{Desulfomicrobium baculatum [TaxId: 899]}
Length = 487
Score = 178 bits (451), Expect = 2e-49
Identities = 63/471 (13%), Positives = 127/471 (26%), Gaps = 105/471 (22%)
Query: 295 HGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAY 354
G L++ +E++ V A G + R E++ R S + R+ V + A
Sbjct: 12 EGHLKIEVEVKDGKVVDAKCS-GGMFRGFEQILRGRDPRDSSQIVQRICGVCPTAHCTAS 70
Query: 355 VMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIG----------------------- 391
VMA + +K+ + R + L +H++
Sbjct: 71 VMAQDDAFGVKVTTNGRITRNLIFGANYLQSHILHFYHLAALDYVKGPDVSPFVPRYANA 130
Query: 392 ------------SHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDL 439
+ + + + L A R + G H GG
Sbjct: 131 DLLTDRIKDGAKADATNTYGLNQYLKALEIRRICHEMVAMFGGRMPHVQGMVVGGATEIP 190
Query: 440 -PEIMPQYKSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTDNRIWKQ 498
+ + +Y + + F+ + + T L + I +
Sbjct: 191 TADKVAEYAARFKE---------------VQKFVIEEYLPLIYTLGSVYTDLFETGIGWK 235
Query: 499 RLVGIGVVSPERALSMGFTGP--MLRGSGVKWDLRKKQPYEIYNLLNFDIPIGKNGDSYD 556
++ GV + P + G ++D + + Y ++ + P G + +
Sbjct: 236 NVIAFGVFPEDDDYKTFLLKPGVYIDGKDEEFDSKLVKEYVGHSFFDHSAPGGLHYSVGE 295
Query: 557 -----------------RYLVRIEEMRQSNKIIKQCI-------KWLRSNKGPVISNNNK 592
RY + E+ ++ Q K L+ G
Sbjct: 296 TNPNPDKPGAYSFVKAPRYKDKPCEVGPLARMWVQNPELSPVGQKLLKELYGIEAKKFRD 355
Query: 593 ITSPARINMKSN-------------MEDLIHHFKLFTEGFYVPL----GEIYSCVEHPKG 635
+ A M + +E + + E + E E P+G
Sbjct: 356 LGDKAFSIMGRHVLRAEETWLTAVAVEKWLKQVQPGAETYVKSEIPDAAEGTGFTEAPRG 415
Query: 636 EFGIYLVSDGANKPYRIKIRSP---------GFAHLQSLSEMISGHMISDV 677
YL K +I S + E + G + D+
Sbjct: 416 ALLHYLKIKD-KKIENYQIVSATLWNANPRDDMGQRGPIEEALIGVPVPDI 465
>d1frfl_ e.18.1.1 (L:) Nickel-iron hydrogenase, large subunit
{Desulfovibrio fructosovorans [TaxId: 878]}
Length = 543
Score = 131 bits (330), Expect = 7e-33
Identities = 57/476 (11%), Positives = 118/476 (24%), Gaps = 115/476 (24%)
Query: 295 HGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAY 354
G LR+++E+E V+ A L R E + + R + + R V + A
Sbjct: 19 EGHLRIMVEVENGKVKDAWSSSQL-FRGLEIILKGRDPRDAQHFTQRACGVCTYVHALAS 77
Query: 355 VMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLLY--------- 405
++ + + IP A+ +R + L +HL+
Sbjct: 78 SRCVDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHALDWVDVTAALKADPNKAAK 137
Query: 406 ---------------AFREREDLLDCYEAVSGARMHAAYYRPGGV--YRDLPEIMPQYKS 448
A + +D L + + Y GG Y PE+ +
Sbjct: 138 LAASIDTARTGNSEKALKAVQDKLKAFVESGQLGIFTNAYFLGGHKAYYLPPEVNLIATA 197
Query: 449 SIIRNNKATKILNE---------------------NRQGSLLDFIEDFTNRFPKNIDEYE 487
+ N QG D + ++ +
Sbjct: 198 HYLEALHMQVKAASAMAILGGKNPHTQFTVVGGCSNYQGLTKDPLANYLALSKEVCQFVN 257
Query: 488 TLLTDNRIW-------------KQRLVGIGVVSPERALSMGFTGPMLRGSGV--KWDLRK 532
+ + + G + + + SGV DL K
Sbjct: 258 ECYIPDLLAVAGFYKDWGGIGGTSNYLAFGEFATDDSSPEKHLATSQFPSGVITGRDLGK 317
Query: 533 ------------------------KQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQS 568
K PY+ + K+ S+ + + +
Sbjct: 318 VDNVDLGAIYEDVKYSWYAPGGDGKHPYDGVTDPKYTKLDDKDHYSWMKAPRYKGKAMEV 377
Query: 569 NKIIKQCIKWLRSNK--------------GPVISNNNKITS-PARIN------------M 601
+ + I + + P + ++ + AR +
Sbjct: 378 GPLARTFIAYAKGQPDFKKVVDMVLGKLSVPATALHSTLGRTAARGIETAIVCANMEKWI 437
Query: 602 KSNMEDLIHHFKLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSP 657
K + L + + + P+G ++ G K ++ P
Sbjct: 438 KEMADSGAKDNTLCAKWEMPEESKGVGLADAPRGSLSHWIRIKG-KKIDNFQLVVP 492
>d1yq9h1 e.18.1.1 (H:7-536) Nickel-iron hydrogenase, large subunit
{Desulfovibrio gigas [TaxId: 879]}
Length = 530
Score = 128 bits (323), Expect = 5e-32
Identities = 67/509 (13%), Positives = 145/509 (28%), Gaps = 118/509 (23%)
Query: 295 HGVLRLILELEGEVVRKADPHIGLLHR--------------------------------- 321
G LR+ +E+EG ++ A L R
Sbjct: 12 EGHLRIEVEVEGGKIKNAWSM-STLFRGLEMILKGRDPRDAQHFTQRACGVCTYVHALAS 70
Query: 322 --ATEKLAEQR---------------TYLQS----LPYMDRLDYVSMMCNEHAYVMAIEK 360
A + + Y+ ++ LD+V++ +A +
Sbjct: 71 VRAVDNCVGVKIPENATLMRNLTMGAQYMHDHLVHFYHLHALDWVNVANALNADPAKAAR 130
Query: 361 LLNIKIPIR--AQYIRVMFDEITRL--------LNHLMWIGSHS-------LDIGAMGVL 403
L N P + + ++ + ++ L + ++G H +D+ A
Sbjct: 131 LANDLSPRKTTTESLKAVQAKVKALVESGQLGIFTNAYFLGGHPAYVLPAEVDLIATAHY 190
Query: 404 LYAFREREDLLDCYEAVSGARMHAAYYRPGGVYRDL---PEIMPQYKSSIIRNNKATKIL 460
L A R + H + GG PE + +++ + + +
Sbjct: 191 LEALRVQVKAARAMAIFGAKNPHTQFTVVGGCTNYDSLRPERIAEFRKLYKEVREFIEQV 250
Query: 461 NENRQGSLLDFIEDFTNRFP-KNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGP 519
++ F +++ N TD R GV+ + P
Sbjct: 251 YITDLLAVAGFYKNWAGIGKTSNFLTCGEFPTDEYDLNSRYTPQGVIWGNDLSKVDDFNP 310
Query: 520 MLRGSGVKWDLRK----KQPYEIYNLLNFDIPIGKNGDSYDRYLVRIEEMRQSNKIIKQC 575
L VK+ + PY+ + G++ S+ + E + +
Sbjct: 311 DLIEEHVKYSWYEGADAHHPYKGVTKPKWTEFHGEDRYSWMKAPRYKGEAFEVGPLASVL 370
Query: 576 IKWLRSNK---------------GPVISNNNKITSPAR-INMKSNMEDLIHHF------- 612
+ + + ++ GP + + AR I + +++
Sbjct: 371 VAYAKKHEPTVKAVDLVLKTLGVGPEALFSTLGRTAARGIQCLTAAQEVEVWLDKLEANV 430
Query: 613 -----KLFTEGFYVPLGEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSP---------G 658
L+T+ Y + V P+G ++V G K ++ P
Sbjct: 431 KAGKDDLYTDWQYPTESQGVGFVNAPRGMLSHWIVQRG-GKIENFQLVVPSTWNLGPRCA 489
Query: 659 FAHLQSLSEMISGHMISDVVTIIGTQDIV 687
L ++ + + G I+D + V
Sbjct: 490 EGKLSAVEQALIGTPIADPKRPVEILRTV 518
>d2fug51 d.307.1.1 (5:1-196) NADH-quinone oxidoreductase chain 5,
Nqo5 {Thermus thermophilus [TaxId: 274]}
Length = 196
Score = 113 bits (284), Expect = 2e-29
Identities = 53/135 (39%), Positives = 70/135 (51%), Gaps = 16/135 (11%)
Query: 152 DYYSTMKILRDHVNFRFEQLIDLCGIDYSIYNKNINSDNSNKNLRFAIVLHLLSLNY--- 208
+ M + F L D+ G+DY Y + RFA+V L+SL
Sbjct: 33 RFKEEMAHYKA---MGFNFLADIVGLDYLTYPDP-------RPERFAVVYELVSLPGWKD 82
Query: 209 --NWRLRVRVFAENNELPRLHSITSLWSSANWYEREAFDLFGIFFDGHDDLRRLLTDYGF 266
R VRV+ E PRL ++T LW SAN+ ERE +DLFGI F+GH DLR++LT
Sbjct: 83 GDGSRFFVRVYV-PEEDPRLPTVTDLWGSANFLEREVYDLFGIVFEGHPDLRKILTPEDL 141
Query: 267 VGHPFRKDFPVIEIK 281
GHP RKD+P+ E
Sbjct: 142 EGHPLRKDYPLGETP 156
>d1wuil1 e.18.1.1 (L:19-552) Nickel-iron hydrogenase, large subunit
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 534
Score = 119 bits (299), Expect = 5e-29
Identities = 33/219 (15%), Positives = 67/219 (30%), Gaps = 8/219 (3%)
Query: 295 HGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAY 354
G LR+ +E+E V+ A L R E + + R + + R V + A
Sbjct: 16 EGHLRIEVEVENGKVKNAYSS-STLFRGLEIILKGRDPRDAQHFTQRTCGVCTYTHALAS 74
Query: 355 VMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGV----LLYAFRER 410
++ + + IP A YIR + L +H++ A +
Sbjct: 75 TRCVDNAVGVHIPKNATYIRNLVLGAQYLHDHIVHFYHLHALDFVDVTAALKADPAKAAK 134
Query: 411 EDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENRQGSLLD 470
+ A + A + + ++ P + + + A + E +
Sbjct: 135 VASSISPRKTTAADL-KAVQDKLKTFVETGQLGPFTNAYFLGGHPAYYLDPETNLIATAH 193
Query: 471 FIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPE 509
++E + + Q V GV +
Sbjct: 194 YLEALRLQ--VKAARAMAVFGAKNPHTQFTVVGGVTCYD 230
Score = 109 bits (272), Expect = 1e-25
Identities = 52/443 (11%), Positives = 109/443 (24%), Gaps = 55/443 (12%)
Query: 292 PAAHGVLRLILELEGEVVRKAD--PHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMC 349
A + L+L + D H LH +S
Sbjct: 88 KNATYIRNLVLGAQ----YLHDHIVHFYHLHALDFVDVTAALKADPAKAAKVASSISPRK 143
Query: 350 NEHAYVMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGSHSLDIGAMGVLLYAFRE 409
A + A++ L + F L H + ++ A L A R
Sbjct: 144 TTAADLKAVQDKLKTFVETGQLGP---FTNAYFLGGHPAYYLDPETNLIATAHYLEALRL 200
Query: 410 REDLLDCYEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRNNKATKILNENRQGSLL 469
+ H + GGV + + ++E LL
Sbjct: 201 QVKAARAMAVFGAKNPHTQFTVVGGVTCYDALTPQRIAEFEALWKETKAFVDEVYIPDLL 260
Query: 470 DFIEDFTNRF----PKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGFTGPMLRGSG 525
+ + N + D R GVV ++ M
Sbjct: 261 VVAAAYKDWTQYGGTDNFITFGEFPKDEYDLNSRFFKPGVVFKRDFKNIKPFDKMQIEEH 320
Query: 526 VKWDLRK----KQPYEIYNLLNFDIPIGKNGDSYD---RYLVRIEEMRQSNKIIKQCIKW 578
V+ + + P++ + G + S+ RY+ E +++ +
Sbjct: 321 VRHSWYEGAEARHPWKGQTQPKYTDLHGDDRYSWMKAPRYMGEPMETGPLAQVLIAYSQG 380
Query: 579 LRSNKGPVISNNNKITSP------------------------ARINMKSNMEDLIHHFKL 614
K + K+ + ++ +++ +
Sbjct: 381 HPKVKAVTDAVLAKLGVGPEALFSTLGRTAARGIETAVIAEYVGVMLQEYKDNIAKGDNV 440
Query: 615 FTEGFYVPL-GEIYSCVEHPKGEFGIYLVSDGANKPYRIKIRSPGFAH---------LQS 664
+ +P E V P+G ++ + K ++ P L
Sbjct: 441 ICAPWEMPKQAEGVGFVNAPRGGLSHWIRIED-GKIGNFQLVVPSTWTLGPRCDKNKLSP 499
Query: 665 LSEMISGHMISDVVTIIGTQDIV 687
+ + G ++D + V
Sbjct: 500 VEASLIGTPVADAKRPVEILRTV 522
>d1e3db_ e.18.1.1 (B:) Nickel-iron hydrogenase, large subunit
{Desulfovibrio desulfuricans [TaxId: 876]}
Length = 537
Score = 118 bits (297), Expect = 1e-28
Identities = 41/227 (18%), Positives = 81/227 (35%), Gaps = 11/227 (4%)
Query: 295 HGVLRLILELEGEVVRKADPHIGLLHRATEKLAEQRTYLQSLPYMDRLDYVSMMCNEHAY 354
G LR+ +E+EG V+++A L R E + + R + + R V + A
Sbjct: 19 EGHLRIEVEVEGGVIKEARSC-ATLFRGIETILKGRDPRDAQHFTQRTCGVCTYTHALAS 77
Query: 355 VMAIEKLLNIKIPIRAQYIRVMFDEITRLLNHLMWIGS-HSLDIGAMGVLLYAFREREDL 413
+E +N IP A YIR + + +HL+ H+LD + L A +
Sbjct: 78 TRCLEDAINKPIPANATYIRNLVLGNQFMHDHLVHFYHLHALDFVDVTSALLADPAKAAK 137
Query: 414 LDCYEAVSGARMHAAYYRPGG----VYRDLPEIMPQYKSSIIRNNKATKILNENRQGSLL 469
L ++S + + + ++ P + + ++ + E
Sbjct: 138 L--ANSISPRKATTEEFAAVQAKLKTFVASGQLGPFTNAYFLGGHEGYYMDPEANLVCTA 195
Query: 470 DFIEDFTNRFPKNIDEYETLLTDNRIWKQRLVGIGVVSPERALSMGF 516
+++ R + + + Q V G V+ AL+
Sbjct: 196 HYLQAL--RAQVEVAKGMAVFGAKNPHTQFTV-AGGVTCYEALTPER 239
>d1wuis1 e.19.1.1 (S:1-267) Nickel-iron hydrogenase, small subunit
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 267
Score = 75.7 bits (186), Expect = 8e-16
Identities = 24/154 (15%), Positives = 47/154 (30%), Gaps = 36/154 (23%)
Query: 34 RTSSMWPMTFGLACCAIEMMHAGASRYD---LDRFGIMFRPS------------------ 72
R S ++ C+ ++ A D LD + + +
Sbjct: 6 RPSVVYLHNAECTGCSESVLRAFEPYIDTLILDTLSLDYHETIMAAAGDAAEAALEQAVN 65
Query: 73 PRQSDVMIVAGTLCNKMA---------PALRKVYDQMTEPKWVISMGSCANGGGYYH--Y 121
+ +V G + L + + + VI+ G+CA GG
Sbjct: 66 SPHGFIAVVEGGIPTAANGIYGKVANHTMLDICSRILPKAQAVIAYGTCATFGGVQAAKP 125
Query: 122 SYSVVRGCDRIVP----VDVYIPGCPPTAEALLY 151
+ + +G + + + I GCPP L+
Sbjct: 126 NPTGAKGVNDALKHLGVKAINIAGCPPNPYNLVG 159
>d1yq9a1 e.19.1.1 (A:4-264) Nickel-iron hydrogenase, small subunit
{Desulfovibrio gigas [TaxId: 879]}
Length = 261
Score = 70.0 bits (171), Expect = 6e-14
Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 15/99 (15%)
Query: 68 MFRPSPRQSDVMIVAGTLCNKMA---------PALRKVYDQMTEPKWVISMGSCANGGGY 118
+ + V ++ G + + + K VI++G+CA GG
Sbjct: 56 ALHEAIKGDFVCVIEGGIPMGDGGYWGKVGGRNMYDICAEVAPKAKAVIAIGTCATYGGV 115
Query: 119 Y--HYSYSVVRGCDRI----VPVDVYIPGCPPTAEALLY 151
+ + G + + I GCPP +
Sbjct: 116 QAAKPNPTGTVGVNEALGKLGVKAINIAGCPPNPMNFVG 154
>d1cc1s_ e.19.1.1 (S:) Nickel-iron hydrogenase, small subunit
{Desulfomicrobium baculatum [TaxId: 899]}
Length = 278
Score = 67.8 bits (165), Expect = 4e-13
Identities = 20/150 (13%), Positives = 44/150 (29%), Gaps = 33/150 (22%)
Query: 52 MMHAGASRYDLDRFGIMFRPSPRQSDVMIVAGTLCNKM-------------------APA 92
M G + ++V G +
Sbjct: 45 MASEGE---MALAHMYEIAEKFNGNFFLLVEGAIPTAKEGRYCIVGETLDAKAHHHEVTM 101
Query: 93 LRKVYDQMTEPKWVISMGSCANGGGYYHYSYSV--------VRGCDRIVPVDVYIPGCPP 144
+ + D + +++G+C+ GG +V ++I + V +PGCPP
Sbjct: 102 MELIRDLAPKSLATVAVGTCSAYGGIPAAEGNVTGSKSVRDFFADEKIEKLLVNVPGCPP 161
Query: 145 TAEALLYDYYSTMKILRDHVNFRFEQLIDL 174
+ ++ + + +N L +L
Sbjct: 162 HPDWMV---GTLVAAWSHVLNPTEHPLPEL 188
>d1frfs_ e.19.1.1 (S:) Nickel-iron hydrogenase, small subunit
{Desulfovibrio fructosovorans [TaxId: 878]}
Length = 261
Score = 66.1 bits (161), Expect = 1e-12
Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 12/92 (13%)
Query: 72 SPRQSDVMIVAGTLCNKM---------APALRKVYDQMTEPKWVISMGSCANGGGYYH-- 120
+ ++V G L P + + K +I +G+C+ GG
Sbjct: 62 EGKDGYYLVVEGGLPTIDGGQWGMVAGHPMIETCKKAAAKAKGIICIGTCSPYGGVQKAK 121
Query: 121 YSYSVVRGCDRIVPVDV-YIPGCPPTAEALLY 151
+ S +G + V IPGCPP +
Sbjct: 122 PNPSQAKGVSEALGVKTINIPGCPPNPINFVG 153
>d1a81a2 d.93.1.1 (A:138-262) Syk tyrosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 125
Score = 28.9 bits (64), Expect = 1.0
Identities = 7/66 (10%), Positives = 18/66 (27%), Gaps = 2/66 (3%)
Query: 558 YLVRIEEMRQSNKIIKQCIKWLRSNKGPVISNNNKITSPARINMKSNMEDLIHHFKLFTE 617
+L+R + S + + + + + L+ H+ +
Sbjct: 55 FLIRARDNNGSYALCLLHEGKVLHYRIDKDKTGKLSIPEGKK--FDTLWQLVEHYSYKAD 112
Query: 618 GFYVPL 623
G L
Sbjct: 113 GLLRVL 118
>d3bona1 d.92.1.7 (A:3-419) Botulinum neurotoxin {Clostridium
botulinum, serotype A [TaxId: 1491]}
Length = 417
Score = 29.4 bits (66), Expect = 1.5
Identities = 5/32 (15%), Positives = 10/32 (31%)
Query: 164 VNFRFEQLIDLCGIDYSIYNKNINSDNSNKNL 195
+ FE+L G D + ++
Sbjct: 254 LEVSFEELRTFGGHDAKFIDSLQENEFRLYYY 285
>d2j12a1 b.21.1.1 (A:184-365) Adenovirus fiber protein "knob" domain
{Human adenovirus type 37 [TaxId: 52275]}
Length = 182
Score = 28.3 bits (63), Expect = 2.5
Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 3/72 (4%)
Query: 180 SIYNKNINSDNSNKNLRFAIVLHLLSLNYNWRLRVRVFAENNELPRLHSITSLWSSANWY 239
Y K NS +++ + + + ++ N E +SIT +S + Y
Sbjct: 108 VAYPKPSNSKKYARDIVYGTIYLGGKPDQPAVIKTTF---NQETGCEYSITFNFSWSKTY 164
Query: 240 EREAFDLFGIFF 251
E F+ F
Sbjct: 165 ENVEFETTSFTF 176
>d1krqa_ a.25.1.1 (A:) Non-hem ferritin {Campylobacter jejuni
[TaxId: 197]}
Length = 165
Score = 28.0 bits (62), Expect = 2.5
Identities = 13/116 (11%), Positives = 40/116 (34%), Gaps = 7/116 (6%)
Query: 384 LNHLMWIGSHSLDIGAMGVLLYAFREREDLLDCYEAVSGARMHA---AYYRPGGVYRDLP 440
L+ W +SLD + +A E + ++ H +P ++ L
Sbjct: 25 LSMSSWCYENSLDGAGAFLFAHASEESDHAKKLITYLNETDSHVELQEVKQPEQNFKSLL 84
Query: 441 EIMPQY----KSSIIRNNKATKILNENRQGSLLDFIEDFTNRFPKNIDEYETLLTD 492
++ + + N + + ++ S +F++ + + + + ++
Sbjct: 85 DVFEKTYEHEQFITKSINTLVEHMLTHKDYSTFNFLQWYVSEQHEEEALFRGIVDK 140
>d1nkta2 a.172.1.1 (A:616-835) Helical scaffold and wing domains of
SecA {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 220
Score = 27.5 bits (60), Expect = 4.2
Identities = 19/156 (12%), Positives = 45/156 (28%), Gaps = 13/156 (8%)
Query: 97 YDQMTEPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYIPGCPPTAEALLYDYYST 156
+ + +G Y+ +Y G + +
Sbjct: 53 LKDQALDMVRDVITAYVDGATGEGYAEDWDLDALWTALKTLYPVGITADSLTRKDHEFER 112
Query: 157 MKILRDHVNFRFEQLIDLCGIDYSIYNKNINSDNSNKNLRFAIVLHLLSLNYNWRLRVRV 216
+ R+ + + + + I + + + L ++L+ ++ WR
Sbjct: 113 DDLTREELLEALLKDAERAYAAREAELEEIAGEGAMRQLERNVLLN--VIDRKWR----- 165
Query: 217 FAENNELPRLHSITSLWSSA-----NWYEREAFDLF 247
E+ L L + A Y+RE +D+F
Sbjct: 166 -EHLYEMDYLKEGIGLRAMAQRDPLVEYQREGYDMF 200
>d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 147
Score = 27.2 bits (59), Expect = 4.5
Identities = 13/100 (13%), Positives = 28/100 (28%), Gaps = 1/100 (1%)
Query: 78 VMIVAGTLCNKMAPALRKVYDQMTEPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDV 137
MI GT M +R + + + + +
Sbjct: 22 GMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDILLRPELEELRNKHSARFKL 81
Query: 138 YIPGCPPTAEALLYDYYSTMKILRDHVNFRFEQ-LIDLCG 176
+ + +++RDH+ E+ L+ +CG
Sbjct: 82 WYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLMCG 121
>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase
{Thermotoga maritima [TaxId: 2336]}
Length = 376
Score = 27.3 bits (59), Expect = 6.9
Identities = 10/95 (10%), Positives = 20/95 (21%), Gaps = 7/95 (7%)
Query: 7 PYKPNPQKNSPYECGFKEFGDKLINWTRTSSMWPMTFGLACCAIEMMHAGASRYDLDRFG 66
K+ G + + + + + + L +G
Sbjct: 256 EELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLSVSFPNIRGSTLQNLLSGYG 315
Query: 67 IMFR-------PSPRQSDVMIVAGTLCNKMAPALR 94
I R V+ G A+R
Sbjct: 316 IYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIR 350
>d2bvla1 c.68.1.22 (A:1-542) Toxin B {Clostridium difficile [TaxId:
1496]}
Length = 542
Score = 27.2 bits (60), Expect = 7.2
Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 417 YEAVSGARMHAAYYRPGGVYRDLPEIMPQYKSSIIRN-NKATKILNENRQGSLLDFIEDF 475
A S +A GG+Y D+ +++P + + + K + + + + + L+ I
Sbjct: 265 LAAASDILRISALKEIGGMYLDV-DMLPGIQPDLFESIEKPSSVTVDFWEMTKLEAIMK- 322
Query: 476 TNRFPKNIDEYETLLTDN 493
+ + I EY + D
Sbjct: 323 ---YKEYIPEYTSEHFDM 337
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.141 0.436
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,839,464
Number of extensions: 144725
Number of successful extensions: 441
Number of sequences better than 10.0: 1
Number of HSP's gapped: 418
Number of HSP's successfully gapped: 32
Length of query: 693
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 601
Effective length of database: 1,144,436
Effective search space: 687806036
Effective search space used: 687806036
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.6 bits)