BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5228
(114 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TT6|A Chain A, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|B Chain B, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|C Chain C, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|D Chain D, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|E Chain E, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|F Chain F, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|G Chain G, Structure Of Clpp From Bacillus Subtilis In Compressed
State
Length = 196
Score = 169 bits (429), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 77/110 (70%), Positives = 96/110 (87%)
Query: 1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
MQFIKP VST+CIG+AASMGAFLLA+G KGKR++LPNS +MIHQPLGGAQGQA++IEI A
Sbjct: 80 MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAA 139
Query: 61 REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKIL 110
+ IL LR +LN++L+E+TG ++ I +DTDRDNF SA+ A+EY LIDKIL
Sbjct: 140 KRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKIL 189
>pdb|3TT7|A Chain A, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|B Chain B, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|C Chain C, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|D Chain D, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|E Chain E, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|F Chain F, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|G Chain G, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
Length = 197
Score = 169 bits (428), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 77/110 (70%), Positives = 96/110 (87%)
Query: 1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
MQFIKP VST+CIG+AASMGAFLLA+G KGKR++LPNS +MIHQPLGGAQGQA++IEI A
Sbjct: 81 MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAA 140
Query: 61 REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKIL 110
+ IL LR +LN++L+E+TG ++ I +DTDRDNF SA+ A+EY LIDKIL
Sbjct: 141 KRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKIL 190
>pdb|3KTG|A Chain A, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|B Chain B, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|C Chain C, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|D Chain D, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|E Chain E, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|F Chain F, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|G Chain G, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTH|A Chain A, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|B Chain B, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|C Chain C, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|D Chain D, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|E Chain E, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|F Chain F, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|G Chain G, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
Length = 199
Score = 169 bits (428), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 77/110 (70%), Positives = 96/110 (87%)
Query: 1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
MQFIKP VST+CIG+AASMGAFLLA+G KGKR++LPNS +MIHQPLGGAQGQA++IEI A
Sbjct: 80 MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAA 139
Query: 61 REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKIL 110
+ IL LR +LN++L+E+TG ++ I +DTDRDNF SA+ A+EY LIDKIL
Sbjct: 140 KRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKIL 189
>pdb|3KTI|A Chain A, Structure Of Clpp In Complex With Adep1
pdb|3KTI|B Chain B, Structure Of Clpp In Complex With Adep1
pdb|3KTI|C Chain C, Structure Of Clpp In Complex With Adep1
pdb|3KTI|D Chain D, Structure Of Clpp In Complex With Adep1
pdb|3KTI|E Chain E, Structure Of Clpp In Complex With Adep1
pdb|3KTI|F Chain F, Structure Of Clpp In Complex With Adep1
pdb|3KTI|G Chain G, Structure Of Clpp In Complex With Adep1
pdb|3KTJ|A Chain A, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|B Chain B, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|C Chain C, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|D Chain D, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|E Chain E, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|F Chain F, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|G Chain G, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTK|A Chain A, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|B Chain B, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|C Chain C, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|D Chain D, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|E Chain E, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|F Chain F, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|G Chain G, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|H Chain H, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|I Chain I, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|J Chain J, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|K Chain K, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|L Chain L, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|M Chain M, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|N Chain N, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
Length = 199
Score = 169 bits (428), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 77/112 (68%), Positives = 96/112 (85%)
Query: 1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
MQFIKP VST+CIG+AASMGAFLLA+G KGKR++LPNS +MIHQPLGGAQGQA++IEI A
Sbjct: 80 MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAA 139
Query: 61 REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112
+ IL LR +LN++L+E+TG ++ I +DTDRDNF SA+ A+EY LIDKIL
Sbjct: 140 KRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKILTH 191
>pdb|3ST9|A Chain A, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3ST9|B Chain B, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3ST9|C Chain C, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3ST9|D Chain D, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3ST9|E Chain E, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3ST9|F Chain F, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3ST9|G Chain G, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3STA|V Chain V, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|A Chain A, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|B Chain B, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|C Chain C, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|E Chain E, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|F Chain F, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|G Chain G, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|I Chain I, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|K Chain K, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|L Chain L, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|M Chain M, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|N Chain N, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|S Chain S, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|T Chain T, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
Length = 197
Score = 163 bits (412), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 72/110 (65%), Positives = 95/110 (86%)
Query: 1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
+Q IKP+V T+CIG+AASMG+FLLA+G KGKRF+LPN+ +MIHQPLGGAQGQA++IEI A
Sbjct: 83 IQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAA 142
Query: 61 REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKIL 110
IL R++LN ILSE+TG S++KI +DTDRDNF++A+ A EY LID+++
Sbjct: 143 NHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVM 192
>pdb|1TYF|A Chain A, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|B Chain B, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|C Chain C, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|D Chain D, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|E Chain E, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|F Chain F, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|G Chain G, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|H Chain H, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|I Chain I, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|J Chain J, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|K Chain K, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|L Chain L, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|M Chain M, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|N Chain N, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1YG6|A Chain A, Clpp
pdb|1YG6|B Chain B, Clpp
pdb|1YG6|C Chain C, Clpp
pdb|1YG6|D Chain D, Clpp
pdb|1YG6|E Chain E, Clpp
pdb|1YG6|F Chain F, Clpp
pdb|1YG6|G Chain G, Clpp
pdb|1YG6|H Chain H, Clpp
pdb|1YG6|I Chain I, Clpp
pdb|1YG6|J Chain J, Clpp
pdb|1YG6|K Chain K, Clpp
pdb|1YG6|L Chain L, Clpp
pdb|1YG6|M Chain M, Clpp
pdb|1YG6|N Chain N, Clpp
pdb|2FZS|A Chain A, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|B Chain B, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|C Chain C, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|D Chain D, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|E Chain E, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|F Chain F, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|G Chain G, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|H Chain H, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|I Chain I, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|J Chain J, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|K Chain K, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|L Chain L, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|M Chain M, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|N Chain N, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
Length = 193
Score = 163 bits (412), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 74/114 (64%), Positives = 94/114 (82%)
Query: 1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
MQFIKP+VST+C+G AASMGAFLL +G KGKRF LPNSR+MIHQPLGG QGQA+DIEI A
Sbjct: 80 MQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHA 139
Query: 61 REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQRK 114
REIL ++ R+NE+++ TG S+++I +DT+RD F+SA A+EY L+D IL R
Sbjct: 140 REILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 193
>pdb|3QWD|A Chain A, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|B Chain B, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|C Chain C, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|D Chain D, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|E Chain E, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|F Chain F, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|G Chain G, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|H Chain H, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|I Chain I, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|J Chain J, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|K Chain K, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|L Chain L, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|M Chain M, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|N Chain N, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3V5E|A Chain A, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|B Chain B, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|C Chain C, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|D Chain D, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|E Chain E, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|F Chain F, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|G Chain G, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|H Chain H, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|I Chain I, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|J Chain J, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|K Chain K, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|L Chain L, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|M Chain M, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|N Chain N, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
Length = 203
Score = 162 bits (411), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 72/110 (65%), Positives = 95/110 (86%)
Query: 1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
+Q IKP+V T+CIG+AASMG+FLLA+G KGKRF+LPN+ +MIHQPLGGAQGQA++IEI A
Sbjct: 81 IQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAA 140
Query: 61 REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKIL 110
IL R++LN ILSE+TG S++KI +DTDRDNF++A+ A EY LID+++
Sbjct: 141 NHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVM 190
>pdb|1YG8|A Chain A, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|B Chain B, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|C Chain C, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|D Chain D, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|E Chain E, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|F Chain F, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|G Chain G, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|H Chain H, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|I Chain I, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|J Chain J, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|K Chain K, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|L Chain L, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|M Chain M, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|N Chain N, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|O Chain O, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|P Chain P, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|Q Chain Q, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|R Chain R, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|S Chain S, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|T Chain T, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|U Chain U, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|V Chain V, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|W Chain W, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|X Chain X, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|Y Chain Y, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|Z Chain Z, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|AA Chain a, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|BB Chain b, The Structure Of A V6a Variant Of Clpp
Length = 193
Score = 162 bits (411), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 74/114 (64%), Positives = 94/114 (82%)
Query: 1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
MQFIKP+VST+C+G AASMGAFLL +G KGKRF LPNSR+MIHQPLGG QGQA+DIEI A
Sbjct: 80 MQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHA 139
Query: 61 REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQRK 114
REIL ++ R+NE+++ TG S+++I +DT+RD F+SA A+EY L+D IL R
Sbjct: 140 REILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 193
>pdb|3MT6|R Chain R, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|S Chain S, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|T Chain T, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|U Chain U, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|O Chain O, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|P Chain P, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|Q Chain Q, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|Y Chain Y, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|Z Chain Z, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|AA Chain a, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|BB Chain b, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|V Chain V, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|W Chain W, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|X Chain X, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|M Chain M, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|L Chain L, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|K Chain K, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|J Chain J, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|I Chain I, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|H Chain H, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|N Chain N, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|F Chain F, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|E Chain E, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|D Chain D, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|C Chain C, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|B Chain B, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|A Chain A, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|G Chain G, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
Length = 207
Score = 162 bits (411), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 74/114 (64%), Positives = 94/114 (82%)
Query: 1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
MQFIKP+VST+C+G AASMGAFLL +G KGKRF LPNSR+MIHQPLGG QGQA+DIEI A
Sbjct: 94 MQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHA 153
Query: 61 REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQRK 114
REIL ++ R+NE+++ TG S+++I +DT+RD F+SA A+EY L+D IL R
Sbjct: 154 REILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 207
>pdb|3V5I|A Chain A, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|B Chain B, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|C Chain C, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|D Chain D, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|E Chain E, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|F Chain F, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|G Chain G, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|H Chain H, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|I Chain I, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|J Chain J, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|K Chain K, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|L Chain L, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|M Chain M, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|N Chain N, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|O Chain O, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|P Chain P, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|Q Chain Q, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|R Chain R, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|S Chain S, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|T Chain T, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|U Chain U, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|V Chain V, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|W Chain W, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|X Chain X, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|Y Chain Y, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|Z Chain Z, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|AA Chain a, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|BB Chain b, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
Length = 203
Score = 162 bits (409), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 71/110 (64%), Positives = 95/110 (86%)
Query: 1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
+Q IKP+V T+CIG+AA+MG+FLLA+G KGKRF+LPN+ +MIHQPLGGAQGQA++IEI A
Sbjct: 81 IQHIKPDVQTICIGMAAAMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAA 140
Query: 61 REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKIL 110
IL R++LN ILSE+TG S++KI +DTDRDNF++A+ A EY LID+++
Sbjct: 141 NHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVM 190
>pdb|3HLN|A Chain A, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|B Chain B, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|C Chain C, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|D Chain D, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|E Chain E, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|F Chain F, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|G Chain G, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|H Chain H, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|I Chain I, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|J Chain J, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|K Chain K, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|L Chain L, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|M Chain M, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|N Chain N, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|O Chain O, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|P Chain P, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|Q Chain Q, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|R Chain R, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|S Chain S, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|T Chain T, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|U Chain U, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|V Chain V, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|W Chain W, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|X Chain X, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|Y Chain Y, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|Z Chain Z, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|1 Chain 1, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|2 Chain 2, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
Length = 193
Score = 160 bits (406), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 73/114 (64%), Positives = 93/114 (81%)
Query: 1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
MQFIKP+VST+C+G AASMGAFLL +G KGKRF LPNSR+MIHQPLGG QGQA+DIEI
Sbjct: 80 MQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHC 139
Query: 61 REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQRK 114
REIL ++ R+NE+++ TG S+++I +DT+RD F+SA A+EY L+D IL R
Sbjct: 140 REILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 193
>pdb|2ZL0|A Chain A, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|B Chain B, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|C Chain C, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|D Chain D, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|E Chain E, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|F Chain F, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|G Chain G, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|H Chain H, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|I Chain I, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|J Chain J, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|K Chain K, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|L Chain L, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|M Chain M, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|N Chain N, Crystal Structure Of H.Pylori Clpp
pdb|2ZL2|A Chain A, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|B Chain B, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|C Chain C, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|D Chain D, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|E Chain E, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|F Chain F, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|G Chain G, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|H Chain H, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|I Chain I, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|J Chain J, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|K Chain K, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|L Chain L, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|M Chain M, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|N Chain N, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
Length = 196
Score = 160 bits (405), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 76/112 (67%), Positives = 96/112 (85%)
Query: 1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
M FI+P+VST+CIG AASMGAFLL+ G KGKRFSLP+SRIMIHQPLGGAQGQASDIEI +
Sbjct: 82 MNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIIS 141
Query: 61 REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112
EIL L+ +N IL++ +G S+++I++DTDRD +MSAK A EY LIDK+L++
Sbjct: 142 NEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVLQK 193
>pdb|2ZL3|A Chain A, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|B Chain B, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|C Chain C, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|D Chain D, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|E Chain E, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|F Chain F, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|G Chain G, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|H Chain H, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|I Chain I, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|J Chain J, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|K Chain K, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|L Chain L, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|M Chain M, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|N Chain N, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL4|A Chain A, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|B Chain B, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|C Chain C, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|D Chain D, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|E Chain E, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|F Chain F, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|G Chain G, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|H Chain H, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|I Chain I, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|J Chain J, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|K Chain K, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|L Chain L, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|M Chain M, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|N Chain N, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
Length = 196
Score = 159 bits (402), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 75/112 (66%), Positives = 96/112 (85%)
Query: 1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
M FI+P+VST+CIG AA+MGAFLL+ G KGKRFSLP+SRIMIHQPLGGAQGQASDIEI +
Sbjct: 82 MNFIRPDVSTICIGQAAAMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIIS 141
Query: 61 REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112
EIL L+ +N IL++ +G S+++I++DTDRD +MSAK A EY LIDK+L++
Sbjct: 142 NEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVLQK 193
>pdb|3P2L|A Chain A, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
pdb|3P2L|B Chain B, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
pdb|3P2L|C Chain C, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
pdb|3P2L|D Chain D, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
pdb|3P2L|E Chain E, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
pdb|3P2L|F Chain F, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
pdb|3P2L|G Chain G, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
Length = 201
Score = 148 bits (373), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 68/113 (60%), Positives = 88/113 (77%)
Query: 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAR 61
QFIKP+VST+CIGLAAS G+ LLA G KGKR+SLP+S+I IHQPLGG +GQASDIEI A+
Sbjct: 85 QFIKPDVSTICIGLAASXGSLLLAGGAKGKRYSLPSSQIXIHQPLGGFRGQASDIEIHAK 144
Query: 62 EILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQRK 114
IL ++ RLN++L+ TG ++ I +DTDRDNF A A Y LID +++ R+
Sbjct: 145 NILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFXXADEAKAYGLIDHVIESRE 197
>pdb|2F6I|A Chain A, Crystal Structure Of The Clpp Protease Catalytic Domain
From Plasmodium Falciparum
pdb|2F6I|B Chain B, Crystal Structure Of The Clpp Protease Catalytic Domain
From Plasmodium Falciparum
pdb|2F6I|C Chain C, Crystal Structure Of The Clpp Protease Catalytic Domain
From Plasmodium Falciparum
pdb|2F6I|D Chain D, Crystal Structure Of The Clpp Protease Catalytic Domain
From Plasmodium Falciparum
pdb|2F6I|E Chain E, Crystal Structure Of The Clpp Protease Catalytic Domain
From Plasmodium Falciparum
pdb|2F6I|F Chain F, Crystal Structure Of The Clpp Protease Catalytic Domain
From Plasmodium Falciparum
pdb|2F6I|G Chain G, Crystal Structure Of The Clpp Protease Catalytic Domain
From Plasmodium Falciparum
Length = 215
Score = 121 bits (304), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 79/113 (69%)
Query: 1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
+IK ++ T+ GL ASM + +LASG KGKR SLPN RIMIHQPLG A G DIEIQ
Sbjct: 92 FNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQT 151
Query: 61 REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113
+EILYL++ L LS T +V+ I +D+DRD +M+A A +Y +ID++++ +
Sbjct: 152 KEILYLKKLLYHYLSSFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVIETK 204
>pdb|1TG6|A Chain A, Crystallography And Mutagenesis Point To An Essential Role
For The N- Terminus Of Human Mitochondrial Clpp
pdb|1TG6|B Chain B, Crystallography And Mutagenesis Point To An Essential Role
For The N- Terminus Of Human Mitochondrial Clpp
pdb|1TG6|C Chain C, Crystallography And Mutagenesis Point To An Essential Role
For The N- Terminus Of Human Mitochondrial Clpp
pdb|1TG6|D Chain D, Crystallography And Mutagenesis Point To An Essential Role
For The N- Terminus Of Human Mitochondrial Clpp
pdb|1TG6|E Chain E, Crystallography And Mutagenesis Point To An Essential Role
For The N- Terminus Of Human Mitochondrial Clpp
pdb|1TG6|F Chain F, Crystallography And Mutagenesis Point To An Essential Role
For The N- Terminus Of Human Mitochondrial Clpp
pdb|1TG6|G Chain G, Crystallography And Mutagenesis Point To An Essential Role
For The N- Terminus Of Human Mitochondrial Clpp
Length = 277
Score = 120 bits (301), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 79/110 (71%)
Query: 1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
MQ+I + T C+G AASMG+ LLA+GT G R SLPNSRIMIHQP GGA+GQA+DI IQA
Sbjct: 136 MQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQA 195
Query: 61 REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKIL 110
EI+ L+++L I ++ T S++ I +RD +MS A E+ ++DK+L
Sbjct: 196 EEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVL 245
>pdb|2CE3|A Chain A, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|B Chain B, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|C Chain C, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|D Chain D, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|E Chain E, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|F Chain F, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|G Chain G, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|H Chain H, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|I Chain I, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|J Chain J, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|K Chain K, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|L Chain L, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|M Chain M, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|N Chain N, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
Length = 200
Score = 114 bits (286), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 78/106 (73%)
Query: 7 NVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYL 66
+++T +G+AASMG FLLA+GTKGKR++LP++RI++HQPLGG G A+DI IQA + +
Sbjct: 87 DIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVI 146
Query: 67 RQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112
++ + + +E TG +++I D+DRD + +A A+EY +D I+ +
Sbjct: 147 KKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITR 192
>pdb|2C8T|A Chain A, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|B Chain B, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|C Chain C, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|D Chain D, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|E Chain E, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|F Chain F, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|G Chain G, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|H Chain H, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|I Chain I, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|J Chain J, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|K Chain K, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|L Chain L, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|M Chain M, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|N Chain N, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
Length = 206
Score = 114 bits (286), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 78/106 (73%)
Query: 7 NVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYL 66
+++T +G+AASMG FLLA+GTKGKR++LP++RI++HQPLGG G A+DI IQA + +
Sbjct: 88 DIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVI 147
Query: 67 RQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112
++ + + +E TG +++I D+DRD + +A A+EY +D I+ +
Sbjct: 148 KKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITR 193
>pdb|2CBY|A Chain A, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CBY|B Chain B, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CBY|C Chain C, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CBY|D Chain D, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CBY|E Chain E, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CBY|F Chain F, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CBY|G Chain G, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
Length = 208
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 78/106 (73%)
Query: 7 NVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYL 66
+++T +G+AASMG FLLA+GTKGKR++LP++RI++HQPLGG G A+DI IQA + +
Sbjct: 87 DIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVI 146
Query: 67 RQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112
++ + + +E TG +++I D+DRD + +A A+EY +D I+ +
Sbjct: 147 KKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITR 192
>pdb|3Q7H|A Chain A, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|B Chain B, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|C Chain C, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|D Chain D, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|E Chain E, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|F Chain F, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|G Chain G, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|H Chain H, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|I Chain I, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|J Chain J, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|K Chain K, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|L Chain L, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|M Chain M, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|N Chain N, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
Length = 195
Score = 110 bits (274), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 83/112 (74%)
Query: 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAR 61
QF+KP+V TLCIG AAS GA LLA G KGKR LP+S + IHQ LGG QGQ +DI+I A+
Sbjct: 83 QFVKPDVRTLCIGQAASAGALLLAGGAKGKRHCLPHSSVXIHQVLGGYQGQGTDIQIHAK 142
Query: 62 EILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113
+ + +LN+IL++ TG ++++ +DT+RD F++ + A+EY LID I K+R
Sbjct: 143 QTQRVSDQLNQILAKHTGKDIERVEKDTNRDYFLTPEEAVEYGLIDSIFKER 194
>pdb|1Y7O|A Chain A, The Structure Of Streptococcus Pneumoniae A153p Clpp
pdb|1Y7O|B Chain B, The Structure Of Streptococcus Pneumoniae A153p Clpp
pdb|1Y7O|C Chain C, The Structure Of Streptococcus Pneumoniae A153p Clpp
pdb|1Y7O|D Chain D, The Structure Of Streptococcus Pneumoniae A153p Clpp
pdb|1Y7O|E Chain E, The Structure Of Streptococcus Pneumoniae A153p Clpp
pdb|1Y7O|F Chain F, The Structure Of Streptococcus Pneumoniae A153p Clpp
pdb|1Y7O|G Chain G, The Structure Of Streptococcus Pneumoniae A153p Clpp
Length = 218
Score = 92.4 bits (228), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 66/110 (60%), Gaps = 2/110 (1%)
Query: 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQP--LGGAQGQASDIEIQ 59
FIK +V T+ G AAS G + +SG KGKRF LPN+ IHQP G Q +D+ I
Sbjct: 100 NFIKADVQTIVXGXAASXGTVIASSGAKGKRFXLPNAEYXIHQPXGGTGGGTQQTDMAIA 159
Query: 60 AREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKI 109
+L R L +IL+E +G S +K+ D +RDN+ SA+ +EY ID+I
Sbjct: 160 PEHLLKTRNTLEKILAENSGQSXEKVHADAERDNWXSAQETLEYGFIDEI 209
>pdb|4HNK|A Chain A, Crystal Structure Of An Enzyme
pdb|4HNK|B Chain B, Crystal Structure Of An Enzyme
pdb|4HNK|C Chain C, Crystal Structure Of An Enzyme
pdb|4HNK|D Chain D, Crystal Structure Of An Enzyme
pdb|4HNK|E Chain E, Crystal Structure Of An Enzyme
pdb|4HNK|F Chain F, Crystal Structure Of An Enzyme
pdb|4HNK|G Chain G, Crystal Structure Of An Enzyme
pdb|4HNK|H Chain H, Crystal Structure Of An Enzyme
pdb|4HNK|I Chain I, Crystal Structure Of An Enzyme
pdb|4HNK|J Chain J, Crystal Structure Of An Enzyme
pdb|4HNK|K Chain K, Crystal Structure Of An Enzyme
pdb|4HNK|L Chain L, Crystal Structure Of An Enzyme
pdb|4HNK|M Chain M, Crystal Structure Of An Enzyme
pdb|4HNK|N Chain N, Crystal Structure Of An Enzyme
Length = 219
Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ-GQASDIEIQ 59
+ +I +V T C+G A + L +SG KG RFSL NS ++Q QA++IEIQ
Sbjct: 106 INYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIPFNQATNIEIQ 165
Query: 60 AREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113
+EI+ ++++ EI+S+ T IS +RD + +A A+++ LID IL++
Sbjct: 166 NKEIMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILEKE 219
>pdb|4GM2|A Chain A, The Crystal Structure Of A Peptidase From Plasmodium
Falciparum
pdb|4GM2|B Chain B, The Crystal Structure Of A Peptidase From Plasmodium
Falciparum
pdb|4GM2|C Chain C, The Crystal Structure Of A Peptidase From Plasmodium
Falciparum
pdb|4GM2|D Chain D, The Crystal Structure Of A Peptidase From Plasmodium
Falciparum
pdb|4GM2|E Chain E, The Crystal Structure Of A Peptidase From Plasmodium
Falciparum
pdb|4GM2|F Chain F, The Crystal Structure Of A Peptidase From Plasmodium
Falciparum
pdb|4GM2|G Chain G, The Crystal Structure Of A Peptidase From Plasmodium
Falciparum
Length = 205
Score = 75.9 bits (185), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ-GQASDIEIQ 59
+ +I +V T C+G A + L +SG KG RFSL NS ++Q QA++IEIQ
Sbjct: 92 INYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIPFNQATNIEIQ 151
Query: 60 AREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113
+EI+ ++++ EI+S+ T IS +RD + +A A+++ LID IL++
Sbjct: 152 NKEIMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILEKE 205
>pdb|1S7Q|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2kb In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7R|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2kb In Complex With
Lcmv-Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7R|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2kb In Complex With
Lcmv-Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7S|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2kb In Complex With
Lcmv-derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7T|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2kb In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7T|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2kb In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
Length = 348
Score = 30.0 bits (66), Expect = 0.38, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 20 GAFLLASGTKGKRFSLPNSRIMIHQP 45
G + LA G++ SLP+ ++M+H P
Sbjct: 319 GDYALAPGSQTSDLSLPDCKVMVHDP 344
>pdb|3M6I|A Chain A, L-Arabinitol 4-Dehydrogenase
pdb|3M6I|B Chain B, L-Arabinitol 4-Dehydrogenase
Length = 363
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 4 IKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAR 61
I+P V+ C G+ +S+ A + A GK F + + I P A + D++ Q R
Sbjct: 251 IEPAVALECTGVESSIAAAIWAVKFGGKVFVIGVGKNEIQIPFMRASVREVDLQFQYR 308
>pdb|3R6H|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase (Echa3) From
Mycobacterium Marinum
Length = 233
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 1 MQFIKPNVSTLCIGLAASMGAFLLASG 27
+ + KP V C G A +MGAFLL SG
Sbjct: 92 LSYPKP-VVIACTGHAIAMGAFLLCSG 117
>pdb|1MWK|A Chain A, Parm From Plasmid R1 Apo Form
pdb|1MWK|B Chain B, Parm From Plasmid R1 Apo Form
pdb|1MWM|A Chain A, Parm From Plasmid R1 Adp Form
pdb|1MWM|B Chain B, Parm From Plasmid R1 Adp Form
pdb|2QU4|A Chain A, Model For Bacterial Parm Filament
pdb|2ZGY|A Chain A, Parm With Gdp
pdb|2ZGY|B Chain B, Parm With Gdp
pdb|2ZGZ|A Chain A, Parm With Gmppnp
pdb|2ZGZ|B Chain B, Parm With Gmppnp
pdb|2ZHC|A Chain A, Parm Filament
pdb|3IKU|A Chain A, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|B Chain B, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|C Chain C, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|D Chain D, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|E Chain E, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|F Chain F, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|G Chain G, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|H Chain H, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|I Chain I, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|J Chain J, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|K Chain K, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|L Chain L, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKY|A Chain A, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|B Chain B, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|C Chain C, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|D Chain D, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|E Chain E, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|F Chain F, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|G Chain G, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|H Chain H, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|I Chain I, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|J Chain J, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|K Chain K, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|L Chain L, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|4A6J|A Chain A, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|B Chain B, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|C Chain C, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|D Chain D, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|E Chain E, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|F Chain F, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|G Chain G, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|H Chain H, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|I Chain I, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|J Chain J, Structural Model Of Parm Filament Based On Cryoem Map
Length = 320
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 14/76 (18%)
Query: 17 ASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNE---- 72
+S+G L+ S K SL ++ G+ A DI I ++ YL+QR+N+
Sbjct: 195 SSLGVSLVTSAVK-DALSLARTK--------GSSYLADDIIIHRKDNNYLKQRINDENKI 245
Query: 73 -ILSEKTGHSVKKISQ 87
I++E +++K+ Q
Sbjct: 246 SIVTEAMNEALRKLEQ 261
>pdb|4A62|A Chain A, Parm From R1 Plasmid In Complex With Peptide From C-
Terminus Of Parr
pdb|4A62|B Chain B, Parm From R1 Plasmid In Complex With Peptide From C-
Terminus Of Parr
Length = 320
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 14/76 (18%)
Query: 17 ASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNE---- 72
+S+G L+ S K SL ++ G+ A DI I ++ YL+QR+N+
Sbjct: 195 SSLGVSLVTSAVK-DALSLARTK--------GSSYLADDIIIHRKDNNYLKQRINDENKI 245
Query: 73 -ILSEKTGHSVKKISQ 87
I++E +++K+ Q
Sbjct: 246 SIVTEAMNEALRKLEQ 261
>pdb|4A61|A Chain A, Parm From Plasmid R1 In Complex With Amppnp
Length = 326
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 14/76 (18%)
Query: 17 ASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNE---- 72
+S+G L+ S K SL ++ G+ A DI I ++ YL+QR+N+
Sbjct: 201 SSLGVSLVTSAVK-DALSLARTK--------GSSYLADDIIIHRKDNNYLKQRINDENKI 251
Query: 73 -ILSEKTGHSVKKISQ 87
I++E +++K+ Q
Sbjct: 252 SIVTEAMNEALRKLEQ 267
>pdb|4AP6|A Chain A, Crystal Structure Of Human Pofut2 E54a Mutant In Complex
With Gdp- Fucose
pdb|4AP6|B Chain B, Crystal Structure Of Human Pofut2 E54a Mutant In Complex
With Gdp- Fucose
pdb|4AP6|C Chain C, Crystal Structure Of Human Pofut2 E54a Mutant In Complex
With Gdp- Fucose
pdb|4AP6|D Chain D, Crystal Structure Of Human Pofut2 E54a Mutant In Complex
With Gdp- Fucose
Length = 422
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 7/96 (7%)
Query: 7 NVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYL 66
NVS L + +AS+ A LL T + L + ++H GG + R +
Sbjct: 182 NVSCLSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKE------YWDTRRSMVF 235
Query: 67 RQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAME 102
+ L E+ E + + D DR F M M+
Sbjct: 236 ARHLREVGDEFRSRHLNS-TDDADRIPFQEDWMKMK 270
>pdb|4AP5|A Chain A, Crystal Structure Of Human Pofut2
pdb|4AP5|B Chain B, Crystal Structure Of Human Pofut2
Length = 408
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 7/96 (7%)
Query: 7 NVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYL 66
NVS L + +AS+ A LL T + L + ++H GG + R +
Sbjct: 168 NVSCLSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKE------YWDTRRSMVF 221
Query: 67 RQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAME 102
+ L E+ E + + D DR F M M+
Sbjct: 222 ARHLREVGDEFRSRHLNS-TDDADRIPFQEDWMKMK 256
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,807,737
Number of Sequences: 62578
Number of extensions: 88653
Number of successful extensions: 248
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 219
Number of HSP's gapped (non-prelim): 31
length of query: 114
length of database: 14,973,337
effective HSP length: 77
effective length of query: 37
effective length of database: 10,154,831
effective search space: 375728747
effective search space used: 375728747
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)