Query psy5228
Match_columns 114
No_of_seqs 120 out of 1142
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 20:57:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5228.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5228hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0740 ClpP Protease subunit 100.0 1.3E-44 2.7E-49 261.4 12.2 113 1-113 81-193 (200)
2 PRK12552 ATP-dependent Clp pro 100.0 2.2E-43 4.8E-48 259.2 12.3 113 1-113 103-215 (222)
3 PRK14513 ATP-dependent Clp pro 100.0 7.7E-43 1.7E-47 253.5 12.5 113 1-113 81-193 (201)
4 PRK14514 ATP-dependent Clp pro 100.0 2.6E-42 5.7E-47 253.7 11.6 114 1-114 108-221 (221)
5 PRK12551 ATP-dependent Clp pro 100.0 8.7E-42 1.9E-46 247.3 11.5 113 1-113 79-191 (196)
6 CHL00028 clpP ATP-dependent Cl 100.0 3.6E-41 7.8E-46 244.7 12.5 113 1-113 84-197 (200)
7 KOG0840|consensus 100.0 2.3E-41 5E-46 250.2 10.1 112 1-112 146-257 (275)
8 PRK14512 ATP-dependent Clp pro 100.0 8.9E-39 1.9E-43 231.8 12.1 113 1-113 77-189 (197)
9 TIGR00493 clpP ATP-dependent C 100.0 1E-38 2.2E-43 230.4 11.4 112 1-112 80-191 (191)
10 PRK00277 clpP ATP-dependent Cl 100.0 1.2E-36 2.5E-41 221.0 12.0 114 1-114 85-198 (200)
11 PF00574 CLP_protease: Clp pro 100.0 1.9E-36 4E-41 215.9 9.8 113 1-113 70-182 (182)
12 cd07013 S14_ClpP Caseinolytic 100.0 2.3E-35 5.1E-40 207.9 11.4 109 1-109 54-162 (162)
13 PRK12553 ATP-dependent Clp pro 100.0 1.9E-35 4E-40 215.7 11.0 113 1-113 89-203 (207)
14 cd07017 S14_ClpP_2 Caseinolyti 100.0 3.3E-35 7.1E-40 208.5 9.8 109 1-109 63-171 (171)
15 cd07016 S14_ClpP_1 Caseinolyti 99.9 1.5E-26 3.3E-31 161.8 11.6 106 2-109 55-160 (160)
16 cd07015 Clp_protease_NfeD Nodu 99.9 1.4E-24 3.1E-29 154.6 9.3 105 1-113 54-166 (172)
17 cd00394 Clp_protease_like Case 99.9 2.7E-23 5.8E-28 145.0 10.5 106 2-109 54-161 (161)
18 cd07020 Clp_protease_NfeD_1 No 99.8 8.4E-19 1.8E-23 125.9 10.9 109 2-113 55-166 (187)
19 cd07021 Clp_protease_NfeD_like 99.8 2.7E-18 5.8E-23 122.9 10.1 104 2-112 55-171 (178)
20 cd07014 S49_SppA Signal peptid 99.6 2.4E-15 5.2E-20 106.8 10.1 101 3-112 69-169 (177)
21 TIGR00706 SppA_dom signal pept 99.4 1.5E-12 3.3E-17 94.8 10.4 103 6-111 62-194 (207)
22 cd07023 S49_Sppa_N_C Signal pe 99.4 1.6E-12 3.4E-17 94.5 10.0 105 4-111 65-199 (208)
23 cd07022 S49_Sppa_36K_type Sign 99.4 5.9E-12 1.3E-16 92.0 10.4 103 5-111 73-205 (214)
24 cd07019 S49_SppA_1 Signal pept 99.3 2.9E-11 6.2E-16 88.3 11.5 107 3-112 68-203 (211)
25 PF01343 Peptidase_S49: Peptid 99.2 8.3E-10 1.8E-14 77.0 11.7 105 4-111 5-139 (154)
26 TIGR00705 SppA_67K signal pept 99.2 3.8E-10 8.2E-15 93.3 11.5 105 4-111 377-510 (584)
27 cd07018 S49_SppA_67K_type Sign 99.0 4.5E-09 9.8E-14 77.2 10.4 104 4-111 77-212 (222)
28 cd06558 crotonase-like Crotona 98.6 2E-07 4.3E-12 66.2 6.9 88 3-112 91-181 (195)
29 COG1030 NfeD Membrane-bound se 98.6 1.7E-07 3.6E-12 75.0 6.8 103 3-112 83-188 (436)
30 COG0616 SppA Periplasmic serin 98.5 7.2E-07 1.6E-11 69.0 9.3 103 7-112 130-262 (317)
31 PRK11778 putative inner membra 98.4 5.8E-06 1.2E-10 64.5 11.4 103 5-112 154-286 (330)
32 PRK06495 enoyl-CoA hydratase; 98.4 1E-06 2.2E-11 65.9 7.0 88 3-112 95-182 (257)
33 PRK10949 protease 4; Provision 98.4 5.7E-06 1.2E-10 69.1 11.2 104 5-111 396-528 (618)
34 PRK06213 enoyl-CoA hydratase; 98.4 1.5E-06 3.2E-11 64.0 6.6 91 2-112 88-180 (229)
35 PRK05869 enoyl-CoA hydratase; 98.3 1.7E-06 3.7E-11 63.6 6.9 91 2-112 96-187 (222)
36 PRK08139 enoyl-CoA hydratase; 98.3 2.2E-06 4.8E-11 64.5 7.2 91 2-112 101-191 (266)
37 PRK08258 enoyl-CoA hydratase; 98.3 1.9E-06 4.1E-11 65.1 6.8 89 2-112 110-202 (277)
38 PRK08150 enoyl-CoA hydratase; 98.3 2.9E-06 6.3E-11 63.5 7.5 90 2-113 89-181 (255)
39 PRK06143 enoyl-CoA hydratase; 98.3 2.2E-06 4.7E-11 64.2 6.5 91 2-112 97-187 (256)
40 PRK07938 enoyl-CoA hydratase; 98.3 2.3E-06 4.9E-11 63.9 6.4 89 2-112 91-179 (249)
41 PRK07112 polyketide biosynthes 98.3 2.9E-06 6.3E-11 63.4 7.0 90 3-112 94-183 (255)
42 PRK06563 enoyl-CoA hydratase; 98.3 4.2E-06 9E-11 62.5 7.5 89 2-112 89-180 (255)
43 PRK09674 enoyl-CoA hydratase-i 98.3 3.4E-06 7.5E-11 63.0 7.0 89 2-112 89-180 (255)
44 PRK07511 enoyl-CoA hydratase; 98.2 5.1E-06 1.1E-10 62.1 7.5 88 3-112 96-186 (260)
45 PRK07468 enoyl-CoA hydratase; 98.2 3.6E-06 7.7E-11 63.1 6.7 88 2-112 97-187 (262)
46 PRK05995 enoyl-CoA hydratase; 98.2 4.4E-06 9.5E-11 62.5 7.1 90 3-112 97-186 (262)
47 PRK03580 carnitinyl-CoA dehydr 98.2 4.6E-06 1E-10 62.5 7.2 88 3-112 92-182 (261)
48 PF01972 SDH_sah: Serine dehyd 98.2 9.8E-06 2.1E-10 61.7 8.5 101 3-105 116-241 (285)
49 PLN02888 enoyl-CoA hydratase 98.2 2.7E-06 5.8E-11 64.0 5.5 89 2-112 96-187 (265)
50 PRK05981 enoyl-CoA hydratase; 98.2 3.9E-06 8.4E-11 62.9 6.3 90 2-113 100-192 (266)
51 PF00378 ECH: Enoyl-CoA hydrat 98.2 2.6E-06 5.7E-11 62.9 5.1 89 3-113 88-179 (245)
52 PRK06494 enoyl-CoA hydratase; 98.2 7.9E-06 1.7E-10 61.2 7.7 88 3-112 92-182 (259)
53 PRK06127 enoyl-CoA hydratase; 98.2 4.9E-06 1.1E-10 62.7 6.5 89 2-112 103-194 (269)
54 PLN03214 probable enoyl-CoA hy 98.2 6.2E-06 1.3E-10 62.6 7.1 92 2-112 104-196 (278)
55 PRK06210 enoyl-CoA hydratase; 98.2 3.9E-06 8.4E-11 63.1 6.0 88 3-112 106-196 (272)
56 PRK05980 enoyl-CoA hydratase; 98.2 3.9E-06 8.4E-11 62.8 5.9 88 3-112 98-188 (260)
57 TIGR03189 dienoyl_CoA_hyt cycl 98.2 4.3E-06 9.3E-11 62.5 6.1 90 3-112 87-176 (251)
58 PRK07396 dihydroxynaphthoic ac 98.2 7.2E-06 1.6E-10 61.9 7.2 88 3-112 105-195 (273)
59 PRK06688 enoyl-CoA hydratase; 98.2 5.1E-06 1.1E-10 62.0 6.3 89 2-112 93-184 (259)
60 PRK09245 enoyl-CoA hydratase; 98.2 4.6E-06 9.9E-11 62.6 6.0 88 3-112 101-191 (266)
61 PRK06190 enoyl-CoA hydratase; 98.2 8.1E-06 1.8E-10 61.3 7.3 89 2-112 91-182 (258)
62 TIGR01929 menB naphthoate synt 98.2 6.2E-06 1.4E-10 61.8 6.5 89 2-112 94-185 (259)
63 PRK09076 enoyl-CoA hydratase; 98.2 7.7E-06 1.7E-10 61.2 7.0 90 2-113 92-184 (258)
64 PRK11423 methylmalonyl-CoA dec 98.2 6.9E-06 1.5E-10 61.6 6.7 89 2-112 93-184 (261)
65 PRK06144 enoyl-CoA hydratase; 98.2 8.3E-06 1.8E-10 61.2 7.0 88 3-112 100-191 (262)
66 PRK06023 enoyl-CoA hydratase; 98.2 4.8E-06 1E-10 62.1 5.7 89 2-112 94-185 (251)
67 PRK05862 enoyl-CoA hydratase; 98.2 5.3E-06 1.1E-10 62.0 5.9 89 2-112 91-182 (257)
68 TIGR03210 badI 2-ketocyclohexa 98.1 9.4E-06 2E-10 60.7 7.2 88 3-112 92-182 (256)
69 PRK07799 enoyl-CoA hydratase; 98.1 7.3E-06 1.6E-10 61.4 6.7 89 3-113 98-189 (263)
70 PRK07509 enoyl-CoA hydratase; 98.1 6.1E-06 1.3E-10 61.7 6.2 87 3-111 100-189 (262)
71 PRK09120 p-hydroxycinnamoyl Co 98.1 7.3E-06 1.6E-10 62.0 6.6 89 2-112 101-192 (275)
72 PRK07658 enoyl-CoA hydratase; 98.1 7.7E-06 1.7E-10 61.0 6.6 89 2-112 91-182 (257)
73 PRK07110 polyketide biosynthes 98.1 7.2E-06 1.6E-10 61.1 6.3 91 2-112 91-182 (249)
74 PRK08259 enoyl-CoA hydratase; 98.1 1.1E-05 2.5E-10 60.3 7.3 87 4-112 92-181 (254)
75 PLN02664 enoyl-CoA hydratase/d 98.1 4.9E-06 1.1E-10 62.8 5.4 89 2-112 108-199 (275)
76 PRK06142 enoyl-CoA hydratase; 98.1 7.1E-06 1.5E-10 61.8 6.3 89 2-112 106-197 (272)
77 PRK08138 enoyl-CoA hydratase; 98.1 1E-05 2.2E-10 60.6 7.0 88 3-112 96-186 (261)
78 PRK08260 enoyl-CoA hydratase; 98.1 8.5E-06 1.8E-10 62.2 6.6 89 2-112 110-201 (296)
79 PRK07260 enoyl-CoA hydratase; 98.1 5.5E-06 1.2E-10 61.8 5.4 89 2-112 95-186 (255)
80 PRK05674 gamma-carboxygeranoyl 98.1 1.1E-05 2.4E-10 60.7 6.9 90 3-112 99-188 (265)
81 PRK07854 enoyl-CoA hydratase; 98.1 1.3E-05 2.8E-10 59.6 7.2 89 3-111 84-173 (243)
82 PRK08252 enoyl-CoA hydratase; 98.1 1.7E-05 3.7E-10 59.2 7.7 88 3-112 89-179 (254)
83 PLN02921 naphthoate synthase 98.1 1.4E-05 3E-10 62.2 7.4 88 3-112 159-249 (327)
84 PRK08290 enoyl-CoA hydratase; 98.1 9E-06 1.9E-10 62.0 6.2 89 3-112 116-204 (288)
85 PRK07657 enoyl-CoA hydratase; 98.1 9.8E-06 2.1E-10 60.6 6.2 89 2-112 94-185 (260)
86 PRK08788 enoyl-CoA hydratase; 98.1 1.9E-05 4.1E-10 60.4 7.8 89 4-112 120-209 (287)
87 TIGR02280 PaaB1 phenylacetate 98.1 1.1E-05 2.3E-10 60.3 6.2 88 3-112 91-181 (256)
88 PRK05864 enoyl-CoA hydratase; 98.1 1E-05 2.2E-10 61.2 5.9 88 3-112 107-198 (276)
89 PLN02600 enoyl-CoA hydratase 98.1 1.1E-05 2.3E-10 60.2 5.9 88 3-112 86-176 (251)
90 PRK05809 3-hydroxybutyryl-CoA 98.1 1.3E-05 2.7E-10 60.0 6.3 89 2-112 94-185 (260)
91 PRK12478 enoyl-CoA hydratase; 98.1 1.5E-05 3.3E-10 61.0 6.8 87 3-112 110-197 (298)
92 PRK07327 enoyl-CoA hydratase; 98.0 1.3E-05 2.9E-10 60.3 6.3 88 3-112 104-194 (268)
93 KOG1680|consensus 98.0 9E-06 2E-10 61.8 5.3 89 3-113 125-216 (290)
94 COG1024 CaiD Enoyl-CoA hydrata 98.0 1.3E-05 2.9E-10 59.8 6.1 89 2-112 95-186 (257)
95 PRK06072 enoyl-CoA hydratase; 98.0 2.1E-05 4.6E-10 58.6 6.7 85 2-109 86-173 (248)
96 PRK08140 enoyl-CoA hydratase; 98.0 1.8E-05 4E-10 59.2 6.4 88 3-112 97-187 (262)
97 PRK07659 enoyl-CoA hydratase; 98.0 9.9E-06 2.2E-10 60.7 4.8 86 3-110 96-184 (260)
98 PRK08321 naphthoate synthase; 98.0 3.6E-05 7.8E-10 59.0 7.8 89 2-112 132-224 (302)
99 PRK05870 enoyl-CoA hydratase; 98.0 7.9E-06 1.7E-10 60.8 3.8 87 2-110 92-181 (249)
100 PLN02267 enoyl-CoA hydratase/i 98.0 3.9E-05 8.5E-10 57.0 7.5 91 3-112 92-184 (239)
101 PRK07827 enoyl-CoA hydratase; 97.9 1.6E-05 3.4E-10 59.5 5.1 86 3-111 99-187 (260)
102 TIGR00705 SppA_67K signal pept 97.9 0.00012 2.7E-09 60.9 10.2 105 4-111 125-268 (584)
103 PRK08272 enoyl-CoA hydratase; 97.9 4.4E-05 9.6E-10 58.4 6.7 88 3-112 125-212 (302)
104 TIGR03200 dearomat_oah 6-oxocy 97.8 5.8E-05 1.3E-09 59.5 6.7 89 3-113 122-213 (360)
105 PLN03230 acetyl-coenzyme A car 97.8 3.4E-05 7.3E-10 61.8 5.2 77 4-112 258-337 (431)
106 PRK08184 benzoyl-CoA-dihydrodi 97.8 4.1E-05 8.9E-10 63.3 5.6 90 3-112 121-216 (550)
107 PRK12319 acetyl-CoA carboxylas 97.8 6.2E-05 1.4E-09 56.8 5.5 77 4-112 135-214 (256)
108 PLN02874 3-hydroxyisobutyryl-C 97.7 0.00012 2.7E-09 57.9 7.3 87 3-112 103-192 (379)
109 PRK05724 acetyl-CoA carboxylas 97.7 0.00018 3.9E-09 56.0 7.3 78 3-112 187-267 (319)
110 TIGR00513 accA acetyl-CoA carb 97.7 0.00021 4.4E-09 55.6 7.1 77 4-112 188-267 (316)
111 PRK05617 3-hydroxyisobutyryl-C 97.6 5.1E-05 1.1E-09 59.2 3.8 88 2-112 97-187 (342)
112 CHL00198 accA acetyl-CoA carbo 97.6 0.00031 6.7E-09 54.7 7.7 78 3-112 190-270 (322)
113 PRK11730 fadB multifunctional 97.6 0.00016 3.5E-09 61.4 6.5 89 2-112 99-190 (715)
114 PLN02157 3-hydroxyisobutyryl-C 97.6 0.00028 6.1E-09 56.4 7.1 87 3-112 131-220 (401)
115 PLN02988 3-hydroxyisobutyryl-C 97.5 0.00034 7.3E-09 55.6 7.1 87 3-112 103-192 (381)
116 TIGR03222 benzo_boxC benzoyl-C 97.5 0.00026 5.6E-09 58.6 6.5 91 2-112 362-465 (546)
117 PRK11154 fadJ multifunctional 97.5 0.00032 7E-09 59.5 6.3 89 2-112 98-191 (708)
118 PLN02851 3-hydroxyisobutyryl-C 97.4 0.00046 9.9E-09 55.3 6.8 88 3-113 136-226 (407)
119 TIGR03222 benzo_boxC benzoyl-C 97.4 0.00024 5.3E-09 58.8 5.4 90 3-112 117-212 (546)
120 TIGR02440 FadJ fatty oxidation 97.4 0.00038 8.3E-09 59.0 6.6 89 2-112 93-186 (699)
121 TIGR02437 FadB fatty oxidation 97.4 0.00046 9.9E-09 58.7 6.4 89 2-112 99-190 (714)
122 PRK10949 protease 4; Provision 97.3 0.0024 5.2E-08 53.7 10.2 104 5-111 145-287 (618)
123 TIGR02441 fa_ox_alpha_mit fatt 97.3 0.00067 1.5E-08 57.9 6.3 88 3-112 106-198 (737)
124 PRK08184 benzoyl-CoA-dihydrodi 97.2 0.00077 1.7E-08 55.9 5.5 91 3-112 367-469 (550)
125 PLN03229 acetyl-coenzyme A car 97.1 0.0022 4.7E-08 54.6 7.0 77 4-112 279-358 (762)
126 TIGR03134 malonate_gamma malon 97.0 0.0057 1.2E-07 45.8 8.1 82 4-113 106-190 (238)
127 COG0825 AccA Acetyl-CoA carbox 96.6 0.0014 3E-08 50.5 2.5 80 1-112 184-266 (317)
128 KOG1681|consensus 96.5 0.00062 1.4E-08 51.1 0.1 93 3-113 124-216 (292)
129 COG3904 Predicted periplasmic 96.4 0.014 3.1E-07 43.2 6.6 92 13-108 140-236 (245)
130 TIGR01117 mmdA methylmalonyl-C 95.3 0.031 6.7E-07 46.1 4.9 90 5-113 388-482 (512)
131 KOG1682|consensus 95.2 0.01 2.2E-07 44.1 1.6 92 1-112 121-212 (287)
132 COG0447 MenB Dihydroxynaphthoi 95.2 0.011 2.4E-07 44.2 1.6 85 1-112 112-204 (282)
133 PLN02820 3-methylcrotonyl-CoA 94.3 0.054 1.2E-06 45.3 3.7 102 4-113 438-541 (569)
134 PF01039 Carboxyl_trans: Carbo 93.6 0.11 2.4E-06 42.6 4.3 94 4-113 366-465 (493)
135 TIGR00515 accD acetyl-CoA carb 92.3 0.35 7.7E-06 37.2 5.2 73 5-113 193-266 (285)
136 PRK05654 acetyl-CoA carboxylas 91.2 0.6 1.3E-05 36.0 5.4 73 5-113 194-267 (292)
137 KOG1679|consensus 89.3 0.24 5.1E-06 37.2 1.7 88 3-113 122-213 (291)
138 KOG0016|consensus 85.1 1.1 2.4E-05 34.1 3.3 84 5-112 107-195 (266)
139 PF00681 Plectin: Plectin repe 76.6 1.9 4.1E-05 23.8 1.5 19 90-108 17-35 (45)
140 smart00250 PLEC Plectin repeat 71.7 2.6 5.5E-05 22.3 1.2 19 91-109 18-36 (38)
141 PF14117 DUF4287: Domain of un 70.7 7.4 0.00016 23.2 3.2 33 69-101 4-37 (61)
142 PF06972 DUF1296: Protein of u 70.6 7.1 0.00015 23.2 3.0 34 69-103 7-41 (60)
143 PF01381 HTH_3: Helix-turn-hel 69.5 10 0.00022 20.9 3.5 32 71-102 12-43 (55)
144 TIGR03133 malonate_beta malona 67.9 8.3 0.00018 29.6 3.7 39 6-46 137-177 (274)
145 TIGR02675 tape_meas_nterm tape 67.0 16 0.00035 22.3 4.3 24 69-92 45-68 (75)
146 PRK07189 malonate decarboxylas 65.9 8.8 0.00019 29.8 3.6 39 6-46 146-186 (301)
147 PRK09726 antitoxin HipB; Provi 64.3 23 0.00049 21.9 4.7 48 52-99 9-56 (88)
148 TIGR03070 couple_hipB transcri 63.4 17 0.00038 19.7 3.7 33 70-102 17-49 (58)
149 PF14574 DUF4445: Domain of un 62.9 16 0.00035 29.6 4.7 52 60-111 300-357 (412)
150 TIGR01729 taurine_ABC_bnd taur 62.5 46 0.00099 24.8 6.9 30 71-100 227-256 (300)
151 PF07553 Lipoprotein_Ltp: Host 61.2 14 0.0003 20.9 2.9 30 71-100 10-41 (48)
152 CHL00174 accD acetyl-CoA carbo 60.6 35 0.00075 26.6 5.9 40 5-46 207-247 (296)
153 PF04033 DUF365: Domain of unk 59.7 7.5 0.00016 25.1 1.8 23 81-103 28-50 (97)
154 TIGR03427 ABC_peri_uca ABC tra 58.6 27 0.00058 27.2 5.1 36 68-103 226-262 (328)
155 PF01466 Skp1: Skp1 family, di 55.2 33 0.00071 20.9 4.2 47 55-101 18-67 (78)
156 PF07027 DUF1318: Protein of u 52.6 60 0.0013 20.9 6.3 48 36-89 24-71 (95)
157 PHA00099 minor capsid protein 50.4 82 0.0018 21.7 6.8 52 53-106 60-114 (147)
158 PF08671 SinI: Anti-repressor 49.1 14 0.0003 18.9 1.5 16 75-90 12-27 (30)
159 PRK02866 cyanate hydratase; Va 48.5 43 0.00094 23.4 4.3 37 67-103 17-53 (147)
160 cd02791 MopB_CT_Nitrate-R-NapA 47.4 20 0.00043 23.0 2.5 15 93-107 37-51 (122)
161 PRK11480 tauA taurine transpor 47.1 1.1E+02 0.0024 23.2 6.8 31 71-101 249-279 (320)
162 COG4799 Acetyl-CoA carboxylase 46.6 14 0.00031 30.9 2.0 94 4-113 396-495 (526)
163 cd02434 Nodulin-21_like_3 Nodu 46.5 82 0.0018 23.2 5.8 41 67-108 83-128 (225)
164 cd02794 MopB_CT_DmsA-EC The Mo 45.9 23 0.0005 22.9 2.6 18 91-108 30-47 (121)
165 PF00216 Bac_DNA_binding: Bact 44.5 33 0.00071 20.9 3.0 24 67-90 3-26 (90)
166 PF13443 HTH_26: Cro/C1-type H 44.4 58 0.0013 18.3 4.0 37 63-99 5-42 (63)
167 smart00411 BHL bacterial (prok 43.9 33 0.00072 21.0 3.0 24 67-90 3-26 (90)
168 PF13171 DUF4004: Protein of u 43.3 69 0.0015 23.5 4.9 43 66-108 52-97 (199)
169 TIGR02607 antidote_HigA addict 43.2 38 0.00082 19.9 3.1 31 71-101 21-51 (78)
170 cd02787 MopB_CT_ydeP The MopB_ 42.9 16 0.00036 23.3 1.5 17 92-108 32-48 (112)
171 PF01568 Molydop_binding: Moly 42.6 16 0.00034 23.1 1.3 16 92-107 31-46 (110)
172 PF12844 HTH_19: Helix-turn-he 41.1 67 0.0014 18.1 4.3 40 63-102 7-46 (64)
173 COG3093 VapI Plasmid maintenan 40.8 41 0.0009 22.2 3.1 34 71-104 26-59 (104)
174 cd02433 Nodulin-21_like_2 Nodu 40.7 79 0.0017 23.5 5.0 43 66-109 99-146 (234)
175 PF12535 Nudix_N: Hydrolase of 40.2 31 0.00066 20.2 2.2 29 60-88 28-56 (58)
176 cd02786 MopB_CT_3 The MopB_CT_ 40.1 20 0.00043 22.9 1.5 17 92-108 32-48 (116)
177 PRK02289 4-oxalocrotonate taut 39.8 16 0.00035 20.9 1.0 37 61-97 15-54 (60)
178 PHA01976 helix-turn-helix prot 39.7 71 0.0015 18.1 3.8 38 62-99 9-46 (67)
179 PRK07857 hypothetical protein; 39.1 67 0.0015 21.2 3.9 39 53-91 27-65 (106)
180 cd02785 MopB_CT_4 The MopB_CT_ 38.9 21 0.00046 23.2 1.5 16 92-107 33-48 (124)
181 cd02792 MopB_CT_Formate-Dh-Na- 38.5 32 0.0007 22.0 2.4 15 93-107 37-51 (122)
182 PF06518 DUF1104: Protein of u 38.1 1.1E+02 0.0024 19.6 5.1 42 64-105 43-93 (93)
183 PF09675 Chlamy_scaf: Chlamydi 37.8 1.2E+02 0.0027 20.2 6.9 59 48-108 22-86 (114)
184 PF04814 HNF-1_N: Hepatocyte n 37.1 58 0.0013 23.6 3.6 27 72-98 135-161 (180)
185 cd00508 MopB_CT_Fdh-Nap-like T 36.5 24 0.00053 22.4 1.6 16 92-107 36-51 (120)
186 cd02775 MopB_CT Molybdopterin- 36.3 25 0.00055 21.5 1.5 18 91-108 23-40 (101)
187 PF01515 PTA_PTB: Phosphate ac 36.3 1.1E+02 0.0024 23.8 5.4 62 49-111 44-122 (319)
188 COG4001 Predicted metal-bindin 36.2 49 0.0011 21.4 2.8 45 61-105 55-99 (102)
189 cd00591 HU_IHF Integration hos 36.1 51 0.0011 19.9 2.9 24 67-90 2-25 (87)
190 TIGR02763 chlamy_scaf chlamydi 35.9 1.3E+02 0.0028 19.9 6.6 41 66-108 46-86 (114)
191 PF14420 Clr5: Clr5 domain 35.2 52 0.0011 18.6 2.6 37 62-99 4-40 (54)
192 PF00165 HTH_AraC: Bacterial r 34.9 71 0.0015 16.6 3.5 32 55-86 10-41 (42)
193 cd02782 MopB_CT_1 The MopB_CT_ 34.7 26 0.00057 22.8 1.5 16 92-107 34-49 (129)
194 PF06833 MdcE: Malonate decarb 34.6 1.1E+02 0.0025 22.9 5.0 79 6-111 106-186 (234)
195 TIGR00673 cynS cyanate hydrata 34.5 88 0.0019 21.9 4.1 37 67-103 20-56 (150)
196 TIGR01580 narG respiratory nit 34.4 35 0.00075 31.6 2.6 45 32-107 1088-1132(1235)
197 TIGR01795 CM_mono_cladeE monof 34.1 53 0.0012 20.9 2.8 31 54-84 3-33 (94)
198 cd02788 MopB_CT_NDH-1_NuoG2-N7 32.9 31 0.00067 21.6 1.6 16 92-107 30-45 (96)
199 COG2865 Predicted transcriptio 32.7 27 0.00059 28.9 1.5 90 14-108 191-282 (467)
200 PF04539 Sigma70_r3: Sigma-70 32.6 1.1E+02 0.0023 18.0 4.7 19 71-89 23-41 (78)
201 PLN02639 oxidoreductase, 2OG-F 32.2 1.7E+02 0.0036 22.7 5.8 40 53-92 149-188 (337)
202 PLN02276 gibberellin 20-oxidas 32.1 1.6E+02 0.0035 23.1 5.7 39 54-92 166-204 (361)
203 PTZ00273 oxidase reductase; Pr 32.1 1.7E+02 0.0036 22.5 5.7 40 53-92 136-175 (320)
204 cd02778 MopB_CT_Thiosulfate-R- 32.1 32 0.00068 22.1 1.5 17 92-108 31-47 (123)
205 KOG0143|consensus 32.0 1.6E+02 0.0036 22.8 5.7 39 53-91 134-172 (322)
206 PF12368 DUF3650: Protein of u 31.7 53 0.0011 16.5 1.9 19 72-90 8-26 (28)
207 PF12668 DUF3791: Protein of u 31.7 49 0.0011 19.2 2.2 23 69-91 6-28 (62)
208 PF05920 Homeobox_KN: Homeobox 31.5 86 0.0019 16.7 3.0 19 71-89 16-34 (40)
209 cd02777 MopB_CT_DMSOR-like The 31.3 33 0.00071 22.4 1.5 16 92-107 35-50 (127)
210 cd02781 MopB_CT_Acetylene-hydr 31.3 32 0.0007 22.4 1.5 16 92-107 34-49 (130)
211 PLN02912 oxidoreductase, 2OG-F 30.9 1.7E+02 0.0037 22.9 5.7 40 53-92 156-195 (348)
212 cd02779 MopB_CT_Arsenite-Ox Th 30.6 35 0.00076 21.9 1.6 25 84-108 25-50 (115)
213 COG1099 Predicted metal-depend 30.5 82 0.0018 23.9 3.6 29 81-110 166-207 (254)
214 PLN02216 protein SRG1 30.3 1.7E+02 0.0036 23.0 5.6 39 53-91 168-206 (357)
215 PLN02515 naringenin,2-oxogluta 30.3 1.6E+02 0.0035 23.2 5.5 40 53-92 154-193 (358)
216 PF09862 DUF2089: Protein of u 30.1 1.7E+02 0.0037 19.5 4.9 22 81-103 90-111 (113)
217 PF08383 Maf_N: Maf N-terminal 30.0 30 0.00064 18.3 0.9 15 89-103 16-31 (35)
218 PLN02904 oxidoreductase 29.4 1.9E+02 0.0042 22.7 5.8 40 53-92 167-206 (357)
219 cd02790 MopB_CT_Formate-Dh_H F 29.0 39 0.00084 21.4 1.5 16 92-107 36-51 (116)
220 PRK06424 transcription factor; 28.9 1.5E+02 0.0034 20.4 4.6 30 71-100 100-129 (144)
221 PLN02758 oxidoreductase, 2OG-F 28.8 1.7E+02 0.0036 23.1 5.3 40 53-92 170-209 (361)
222 COG1460 Uncharacterized protei 28.6 1.6E+02 0.0034 19.8 4.4 49 53-101 50-102 (114)
223 cd02783 MopB_CT_2 The MopB_CT_ 28.6 38 0.00081 23.3 1.5 16 92-107 33-48 (156)
224 cd00093 HTH_XRE Helix-turn-hel 28.5 89 0.0019 15.7 3.6 32 71-102 15-46 (58)
225 TIGR02844 spore_III_D sporulat 28.5 1.3E+02 0.0027 18.7 3.7 41 57-98 9-50 (80)
226 PF14991 MLANA: Protein melan- 28.5 19 0.00041 24.2 -0.0 20 91-110 17-36 (118)
227 PF01039 Carboxyl_trans: Carbo 28.4 43 0.00093 27.5 2.0 40 5-46 131-171 (493)
228 smart00530 HTH_XRE Helix-turn- 28.4 88 0.0019 15.6 3.4 31 71-101 13-43 (56)
229 PLN03001 oxidoreductase, 2OG-F 28.3 2E+02 0.0043 21.6 5.5 39 53-91 75-113 (262)
230 TIGR01117 mmdA methylmalonyl-C 28.1 98 0.0021 25.8 4.1 39 6-46 155-194 (512)
231 PF08004 DUF1699: Protein of u 27.5 37 0.0008 23.3 1.3 22 77-98 102-123 (131)
232 PLN02704 flavonol synthase 27.5 1.9E+02 0.004 22.4 5.4 40 53-92 156-195 (335)
233 PF05049 IIGP: Interferon-indu 27.4 1.5E+02 0.0032 23.9 4.8 40 53-92 269-314 (376)
234 COG4008 Predicted metal-bindin 27.3 1.7E+02 0.0036 20.2 4.4 47 54-102 87-133 (153)
235 TIGR02684 dnstrm_HI1420 probab 27.1 1.7E+02 0.0036 18.4 5.5 43 51-95 28-70 (89)
236 PRK06285 chorismate mutase; Pr 26.9 95 0.0021 19.6 3.1 32 53-84 6-37 (96)
237 PF06152 Phage_min_cap2: Phage 26.9 72 0.0016 25.3 3.0 34 58-91 51-84 (361)
238 PF13404 HTH_AsnC-type: AsnC-t 26.9 1.1E+02 0.0024 16.3 3.5 25 64-88 2-26 (42)
239 TIGR01808 CM_M_hiGC-arch monof 26.8 67 0.0015 19.4 2.3 31 58-88 4-34 (74)
240 TIGR02792 PCA_ligA protocatech 26.7 74 0.0016 21.4 2.6 20 70-89 87-106 (117)
241 cd02789 MopB_CT_FmdC-FwdD The 26.3 46 0.001 21.3 1.5 15 93-107 33-47 (106)
242 PF10593 Z1: Z1 domain; Inter 26.2 1.4E+02 0.0031 22.1 4.3 28 19-46 7-35 (239)
243 PLN02393 leucoanthocyanidin di 26.1 2.3E+02 0.0049 22.3 5.6 40 53-92 169-208 (362)
244 PRK09239 chorismate mutase; Pr 26.0 1.6E+02 0.0035 19.1 4.1 36 53-88 9-44 (104)
245 PRK13378 protocatechuate 4,5-d 25.9 79 0.0017 21.3 2.6 20 70-89 93-112 (117)
246 TIGR03826 YvyF flagellar opero 25.9 76 0.0017 21.8 2.6 42 54-95 30-73 (137)
247 PHA01971 hypothetical protein 25.8 33 0.00071 23.3 0.7 22 80-101 20-41 (123)
248 PF06322 Phage_NinH: Phage Nin 25.6 77 0.0017 19.0 2.2 23 26-48 38-60 (64)
249 PLN02750 oxidoreductase, 2OG-F 25.6 2.5E+02 0.0055 21.8 5.8 39 53-91 152-190 (345)
250 TIGR00987 himA integration hos 25.4 99 0.0022 19.4 3.0 24 67-90 4-27 (96)
251 PRK10753 transcriptional regul 25.3 1E+02 0.0022 19.2 3.0 24 67-90 3-26 (90)
252 KOG2726|consensus 25.3 1.8E+02 0.004 23.5 5.0 51 26-78 261-314 (386)
253 PRK15070 propanediol utilizati 25.2 40 0.00087 25.0 1.2 19 90-108 140-158 (211)
254 cd02793 MopB_CT_DMSOR-BSOR-TMA 25.1 50 0.0011 21.7 1.6 17 92-108 34-50 (129)
255 PRK01964 4-oxalocrotonate taut 24.8 1E+02 0.0022 17.5 2.8 29 61-89 15-43 (64)
256 cd02784 MopB_CT_PHLH The MopB_ 24.5 51 0.0011 22.4 1.5 17 91-107 38-54 (137)
257 PF14048 MBD_C: C-terminal dom 24.4 1.7E+02 0.0036 18.9 3.9 41 34-74 55-96 (96)
258 COG3355 Predicted transcriptio 24.4 1.4E+02 0.003 20.3 3.6 38 74-111 37-77 (126)
259 PF06684 AA_synth: Amino acid 24.2 1.2E+02 0.0026 21.9 3.4 46 38-86 28-73 (175)
260 PRK13377 protocatechuate 4,5-d 24.2 88 0.0019 21.4 2.6 20 70-89 93-112 (129)
261 TIGR03879 near_KaiC_dom probab 24.1 1.6E+02 0.0034 18.0 3.5 33 57-89 10-42 (73)
262 COG2028 Uncharacterized conser 24.0 75 0.0016 21.7 2.2 20 70-89 70-89 (145)
263 PRK10664 transcriptional regul 23.9 1.1E+02 0.0024 19.1 3.0 23 68-90 4-26 (90)
264 COG5201 SKP1 SCF ubiquitin lig 23.6 73 0.0016 22.1 2.1 23 78-100 123-145 (158)
265 TIGR01807 CM_P2 chorismate mut 23.5 79 0.0017 19.0 2.1 25 60-84 5-29 (76)
266 cd01392 HTH_LacI Helix-turn-he 23.4 1.3E+02 0.0029 15.9 3.2 26 74-99 3-28 (52)
267 PF07700 HNOB: Heme NO binding 23.1 1.4E+02 0.0031 20.6 3.7 25 67-91 48-72 (171)
268 cd07925 LigA_like_1 The A subu 23.1 98 0.0021 20.5 2.6 21 70-90 82-102 (106)
269 TIGR02297 HpaA 4-hydroxyphenyl 22.9 1.9E+02 0.004 21.2 4.5 22 63-84 212-233 (287)
270 PF00627 UBA: UBA/TS-N domain; 22.9 1.2E+02 0.0027 15.4 3.3 24 79-103 13-36 (37)
271 PF11569 Homez: Homeodomain le 22.8 1.4E+02 0.0031 17.4 3.0 35 55-89 12-46 (56)
272 PF13348 Y_phosphatase3C: Tyro 22.6 1.7E+02 0.0036 16.8 3.7 36 53-88 28-63 (68)
273 PF10410 DnaB_bind: DnaB-helic 22.6 53 0.0012 18.2 1.2 18 67-84 41-58 (59)
274 PLN02997 flavonol synthase 22.5 2.9E+02 0.0062 21.4 5.6 38 53-90 140-177 (325)
275 PF12732 YtxH: YtxH-like prote 22.3 93 0.002 18.5 2.3 19 12-30 6-24 (74)
276 cd07924 PCA_45_Doxase_A The A 22.3 99 0.0021 20.9 2.5 20 70-89 90-109 (121)
277 PF12928 tRNA_int_end_N2: tRNA 22.2 49 0.0011 19.9 1.0 12 90-101 47-58 (72)
278 smart00354 HTH_LACI helix_turn 22.0 1.8E+02 0.0039 16.9 3.8 28 73-100 5-32 (70)
279 PF10078 DUF2316: Uncharacteri 21.7 2.3E+02 0.005 18.1 5.4 39 52-90 4-45 (89)
280 PF01988 VIT1: VIT family; In 21.7 2.4E+02 0.0053 20.3 4.8 22 67-89 82-103 (213)
281 COG1647 Esterase/lipase [Gener 21.6 22 0.00049 26.8 -0.7 58 37-101 16-76 (243)
282 PRK02220 4-oxalocrotonate taut 21.6 1.3E+02 0.0029 16.7 2.8 28 61-88 15-42 (61)
283 cd07921 PCA_45_Doxase_A_like S 21.4 1E+02 0.0022 20.4 2.4 23 71-93 36-58 (106)
284 cd07321 Extradiol_Dioxygenase_ 21.3 1.1E+02 0.0024 18.7 2.5 23 71-93 26-48 (77)
285 PRK00745 4-oxalocrotonate taut 21.2 1.5E+02 0.0033 16.5 3.0 29 61-89 15-43 (62)
286 PF06078 DUF937: Bacterial pro 21.2 2.3E+02 0.0049 18.8 4.3 31 60-90 92-124 (137)
287 PRK11742 bifunctional NADH:ubi 21.1 4.3E+02 0.0093 22.4 6.6 52 54-107 351-402 (575)
288 PF08587 UBA_2: Ubiquitin asso 21.1 39 0.00084 19.0 0.3 25 68-92 3-27 (46)
289 PF12085 DUF3562: Protein of u 20.6 89 0.0019 18.9 1.9 23 69-91 8-30 (66)
290 PF01361 Tautomerase: Tautomer 20.6 1.1E+02 0.0025 17.0 2.3 35 61-95 14-51 (60)
291 PF06892 Phage_CP76: Phage reg 20.5 1.7E+02 0.0037 20.5 3.6 32 71-102 23-56 (162)
292 TIGR01728 SsuA_fam ABC transpo 20.5 2.8E+02 0.006 19.8 4.9 30 65-94 216-245 (288)
293 PRK07075 isochorismate-pyruvat 20.5 1.4E+02 0.003 19.2 2.9 27 55-81 9-35 (101)
294 PLN02820 3-methylcrotonyl-CoA 20.4 1.6E+02 0.0035 25.0 4.0 39 5-45 205-244 (569)
295 TIGR01565 homeo_ZF_HD homeobox 20.3 77 0.0017 18.5 1.5 40 53-92 13-56 (58)
296 PF09832 DUF2059: Uncharacteri 20.3 1.8E+02 0.0039 16.5 3.2 24 64-89 3-26 (64)
297 KOG2870|consensus 20.2 1.9E+02 0.0041 23.3 4.0 17 94-110 266-282 (452)
No 1
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=100.00 E-value=1.3e-44 Score=261.38 Aligned_cols=113 Identities=67% Similarity=1.051 Sum_probs=111.3
Q ss_pred CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228 1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGH 80 (114)
Q Consensus 1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~ 80 (114)
|+|+|+||+|+|+|+|||||++|++||++|+|+++|||++|||||+++..|+++|++++++++.+.++++.++|+++||+
T Consensus 81 m~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq 160 (200)
T COG0740 81 MQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPSGGAQGQASDIEIHAREILKIKERLNRIYAEHTGQ 160 (200)
T ss_pred HHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCCccCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228 81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113 (114)
Q Consensus 81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~ 113 (114)
+.++|.++|+||+||||+||++|||||+|++.+
T Consensus 161 ~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~ 193 (200)
T COG0740 161 TLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESR 193 (200)
T ss_pred CHHHHHHhhcccccCCHHHHHHcCCcceecccc
Confidence 999999999999999999999999999999875
No 2
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=100.00 E-value=2.2e-43 Score=259.22 Aligned_cols=113 Identities=50% Similarity=0.838 Sum_probs=110.8
Q ss_pred CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228 1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGH 80 (114)
Q Consensus 1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~ 80 (114)
|++++++|+|+|+|+|+|+|++||+||++|+|++.|||++|||||+++..|+++|+++++++|+++++.+.++|+++||+
T Consensus 103 m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~G~A~di~~~a~el~~~r~~l~~iya~~TG~ 182 (222)
T PRK12552 103 MRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGARGQATDIQIRAKEVLHNKRTMLEILSRNTGQ 182 (222)
T ss_pred HHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228 81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113 (114)
Q Consensus 81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~ 113 (114)
+.|+|.++|+||+||||+||++|||||+|++++
T Consensus 183 ~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~~~ 215 (222)
T PRK12552 183 TVEKLSKDTDRMFYLTPQEAKEYGLIDRVLESR 215 (222)
T ss_pred CHHHHHHHhcCCCcCCHHHHHHcCCCcEEeccC
Confidence 999999999999999999999999999999864
No 3
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=7.7e-43 Score=253.51 Aligned_cols=113 Identities=48% Similarity=0.809 Sum_probs=110.6
Q ss_pred CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228 1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGH 80 (114)
Q Consensus 1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~ 80 (114)
|+++++||+|+|+|+|+|||++|++||++|+|++.|||++|||||+++..|+++|+++++++|+++++.+.++|+++||+
T Consensus 81 m~~~~~~V~Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iya~~Tg~ 160 (201)
T PRK14513 81 MRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTDL 160 (201)
T ss_pred HHhcCCCEEEEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228 81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113 (114)
Q Consensus 81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~ 113 (114)
+.++|.++|++|+||||+||++|||||+|++++
T Consensus 161 ~~~~I~~~~~rd~~msa~EA~eyGliD~I~~~~ 193 (201)
T PRK14513 161 PHEKLLRDMERDYFMSPEEAKAYGLIDSVIEPT 193 (201)
T ss_pred CHHHHHHHhccCcccCHHHHHHcCCCcEEeccC
Confidence 999999999999999999999999999999865
No 4
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=2.6e-42 Score=253.66 Aligned_cols=114 Identities=55% Similarity=0.891 Sum_probs=111.5
Q ss_pred CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228 1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGH 80 (114)
Q Consensus 1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~ 80 (114)
|+++++||+|+|+|+|||||++|+++|++|+|++.|||++|||||+++..|+++|+++++++++++++.+.++|+++||+
T Consensus 108 m~~~~~~V~tv~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~ 187 (221)
T PRK14514 108 MQFISSDVATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGT 187 (221)
T ss_pred HHhcCCCEEEEEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHhhhcCCceecHHHHHHcCcceeecccCC
Q psy5228 81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQRK 114 (114)
Q Consensus 81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~~ 114 (114)
+.++|.++|++|+||||+||++|||||+|+++++
T Consensus 188 ~~e~I~~~~~rd~wmtA~EA~eyGliD~Vi~~~~ 221 (221)
T PRK14514 188 PFDKVWADSDRDYWMTAQEAKEYGMIDEVLIKKP 221 (221)
T ss_pred CHHHHHHHhhcCccCCHHHHHHcCCccEEeecCC
Confidence 9999999999999999999999999999999864
No 5
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=8.7e-42 Score=247.29 Aligned_cols=113 Identities=65% Similarity=1.021 Sum_probs=110.6
Q ss_pred CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228 1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGH 80 (114)
Q Consensus 1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~ 80 (114)
|+++++||+|+|+|+|+|+|++|+++|++|+|++.|||++|||||+++..|+++|+++++++|+++++.+.++|+++||+
T Consensus 79 m~~~~~~V~t~~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~ 158 (196)
T PRK12551 79 MQHVKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQ 158 (196)
T ss_pred HHhcCCCEEEEEEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228 81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113 (114)
Q Consensus 81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~ 113 (114)
+.++|.++|++|+||||+||++|||||+|++++
T Consensus 159 ~~~~i~~~~~rd~~msa~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 159 PLERIQEDTDRDFFMSPSEAVEYGLIDLVIDKR 191 (196)
T ss_pred CHHHHHHHhhcCcCCCHHHHHHcCCCcEEeccC
Confidence 999999999999999999999999999999875
No 6
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=100.00 E-value=3.6e-41 Score=244.75 Aligned_cols=113 Identities=44% Similarity=0.777 Sum_probs=110.1
Q ss_pred CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228 1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGG-AQGQASDIEIQAREILYLRQRLNEILSEKTG 79 (114)
Q Consensus 1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~-~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg 79 (114)
|+++++||+|+|+|+|+|+|++||++|++|+|++.|||++|||||+++ ..|+++|+++++++|+++++.+.++|+++||
T Consensus 84 m~~~~~~V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg 163 (200)
T CHL00028 84 MQFVKPDVHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTG 163 (200)
T ss_pred HHhcCCCEEEEEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 578999999999999999999999999999999999999999999988 8999999999999999999999999999999
Q ss_pred CCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228 80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113 (114)
Q Consensus 80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~ 113 (114)
++.++|.++|++|+||||+||++|||||+|+++.
T Consensus 164 ~~~e~i~~~~~r~~~lta~EA~eyGliD~I~~~~ 197 (200)
T CHL00028 164 KPLWVISEDMERDVFMSATEAKAYGIVDLVAVNN 197 (200)
T ss_pred cCHHHHHHHhhcCccCCHHHHHHcCCCcEEeecC
Confidence 9999999999999999999999999999999864
No 7
>KOG0840|consensus
Probab=100.00 E-value=2.3e-41 Score=250.23 Aligned_cols=112 Identities=62% Similarity=0.998 Sum_probs=110.6
Q ss_pred CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228 1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGH 80 (114)
Q Consensus 1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~ 80 (114)
|+|+|.||.|+|+|+|+|+|+|||++|.+|+|++.|||++|||||.+++.|++.|+.++++|+.+.++.+.++|+++||+
T Consensus 146 Mq~ik~~V~Tic~G~Aas~aalLLaaG~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq 225 (275)
T KOG0840|consen 146 MQYIKPDVSTICVGLAASMAALLLAAGAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQ 225 (275)
T ss_pred HHhhCCCceeeehhhHHhHHHHHHhcCCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
|.|+|.++|+||.||+|+||+||||||+|++.
T Consensus 226 ~~e~i~~d~dRd~fmsa~EA~eyGliD~v~~~ 257 (275)
T KOG0840|consen 226 PLEVIEKDMDRDRFMSAEEAKEYGLIDKVIDH 257 (275)
T ss_pred cHHHHHhhhcccccCCHHHHHHhcchhhhhcC
Confidence 99999999999999999999999999999984
No 8
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=8.9e-39 Score=231.77 Aligned_cols=113 Identities=41% Similarity=0.741 Sum_probs=109.9
Q ss_pred CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228 1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGH 80 (114)
Q Consensus 1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~ 80 (114)
|+++++||+|+|+|+|+|+|++|+++|++|+|++.|||++|||||++++.|++++++..+++|+++++.+.++|+++||+
T Consensus 77 i~~~~~~V~t~v~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~ 156 (197)
T PRK14512 77 IRFVKPKVFTIGVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQ 156 (197)
T ss_pred HHhCCCCEEEEEEeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228 81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113 (114)
Q Consensus 81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~ 113 (114)
+.+++.++|++|+||||+||++|||||+|++++
T Consensus 157 ~~~~i~~~~~~d~~lta~EA~~yGliD~I~~~~ 189 (197)
T PRK14512 157 ELDKVEKDTDRDFWLDSSSAVKYGLVFEVVETR 189 (197)
T ss_pred CHHHHHHhhhcCcccCHHHHHHcCCccEeecCc
Confidence 999999999999999999999999999999864
No 9
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=100.00 E-value=1e-38 Score=230.45 Aligned_cols=112 Identities=72% Similarity=1.080 Sum_probs=108.5
Q ss_pred CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228 1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGH 80 (114)
Q Consensus 1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~ 80 (114)
|+++++||+|+|+|+|+|+|++|+++|++++|++.|||++|||||+++..|++.|+++++++++++++.+.++|+++||+
T Consensus 80 l~~~~~~v~t~~~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~ 159 (191)
T TIGR00493 80 MQFIKPDVSTICIGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQ 159 (191)
T ss_pred HHhcCCCEEEEEEEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 56788999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred CHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
+.++++++|++|+||||+||++|||||+|++.
T Consensus 160 ~~~~i~~~~~~~~~lta~EA~~~GliD~ii~~ 191 (191)
T TIGR00493 160 SLEQIEKDTERDFFMSAEEAKEYGLIDSVLTR 191 (191)
T ss_pred CHHHHHHHhhCCccCcHHHHHHcCCccEEecC
Confidence 99999999999999999999999999999863
No 10
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=1.2e-36 Score=221.04 Aligned_cols=114 Identities=75% Similarity=1.143 Sum_probs=110.3
Q ss_pred CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228 1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGH 80 (114)
Q Consensus 1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~ 80 (114)
|++++.||+|+|.|.|+|+|++|+++|++++|++.|||++|||+|+++..|++.+++.++++++++++.+.++|+++||+
T Consensus 85 i~~~~~~v~t~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~ 164 (200)
T PRK00277 85 MQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQ 164 (200)
T ss_pred HHhcCCCEEEEEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 57889999999999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred CHHHHHhhhcCCceecHHHHHHcCcceeecccCC
Q psy5228 81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQRK 114 (114)
Q Consensus 81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~~ 114 (114)
+.++++++|++|+||||+||++|||||+|++.++
T Consensus 165 ~~~~i~~~~~~~~~lsa~EA~e~GliD~Ii~~~~ 198 (200)
T PRK00277 165 PLEKIEKDTDRDNFMSAEEAKEYGLIDEVLTKRK 198 (200)
T ss_pred CHHHHHHHhhCCccccHHHHHHcCCccEEeecCC
Confidence 9999999999999999999999999999998763
No 11
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=100.00 E-value=1.9e-36 Score=215.92 Aligned_cols=113 Identities=43% Similarity=0.710 Sum_probs=105.1
Q ss_pred CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228 1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGH 80 (114)
Q Consensus 1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~ 80 (114)
|+.++.||+|+|.|.|+|+|++|+++|++++|++.|+|+||+|+|+.+..|+..++++.+++++++++.+.++|+++||+
T Consensus 70 i~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~ 149 (182)
T PF00574_consen 70 IRSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGL 149 (182)
T ss_dssp HHHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHhcCCCeEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228 81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113 (114)
Q Consensus 81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~ 113 (114)
++++|.++|++++||||+||++|||||+|++++
T Consensus 150 ~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~~~ 182 (182)
T PF00574_consen 150 SKEEIEELMDRDTWLSAEEALEYGIIDEIIESR 182 (182)
T ss_dssp -HHHHHHHCSSTEEEEHHHHHHHTSSSEEESS-
T ss_pred cHHHHHHHHhCCccccHHHHHHcCCCCEeccCC
Confidence 999999999999999999999999999999875
No 12
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=100.00 E-value=2.3e-35 Score=207.93 Aligned_cols=109 Identities=45% Similarity=0.728 Sum_probs=106.1
Q ss_pred CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228 1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGH 80 (114)
Q Consensus 1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~ 80 (114)
|++++.||+|++.|+|+|+|++|+++|++|+|++.|++++|||||+++..|++.|+++..+++++.++.+.++|+++||+
T Consensus 54 i~~~~~~v~~~~~g~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~ 133 (162)
T cd07013 54 IKFIKADVVTIIDGLAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQ 133 (162)
T ss_pred HHhcCCCceEEEEeehhhHHHHHHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHhhhcCCceecHHHHHHcCcceee
Q psy5228 81 SVKKISQDTDRDNFMSAKMAMEYCLIDKI 109 (114)
Q Consensus 81 s~~~i~~~m~~~~~lta~eA~~~GliD~I 109 (114)
+.++|+++|++++||||+||++|||||+|
T Consensus 134 ~~~~i~~~~~~~~~~sa~eA~~~GliD~i 162 (162)
T cd07013 134 SEEELHADLERDTWLSAREAVEYGFADTI 162 (162)
T ss_pred CHHHHHHHHcCCccccHHHHHHcCCCCcC
Confidence 99999999999999999999999999986
No 13
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=1.9e-35 Score=215.74 Aligned_cols=113 Identities=61% Similarity=0.993 Sum_probs=108.5
Q ss_pred CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCC--ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228 1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPL--GGAQGQASDIEIQAREILYLRQRLNEILSEKT 78 (114)
Q Consensus 1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~--~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~t 78 (114)
|++++.||+|+|.|.|+|+|++|+++|++|+|++.|||++|||||+ ++..|++.+++.++++++++++.+.++|+++|
T Consensus 89 i~~~~~~v~t~~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~t 168 (207)
T PRK12553 89 IQFIRPDVQTVCTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHT 168 (207)
T ss_pred HHhcCCCcEEEEEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999999999999 56799999999999999999999999999999
Q ss_pred CCCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228 79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113 (114)
Q Consensus 79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~ 113 (114)
|++.+++++++++++||||+||++|||||+|++..
T Consensus 169 g~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~~~ 203 (207)
T PRK12553 169 GQSVEKIRKDTDRDKWLTAEEAKDYGLVDQIITSY 203 (207)
T ss_pred CCCHHHHHHHHhcCccccHHHHHHcCCccEEcCch
Confidence 99999999999999999999999999999999864
No 14
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=100.00 E-value=3.3e-35 Score=208.52 Aligned_cols=109 Identities=75% Similarity=1.133 Sum_probs=105.8
Q ss_pred CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228 1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGH 80 (114)
Q Consensus 1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~ 80 (114)
|++++.||+|++.|+|+|+|++|+++|++|+|++.|||++|+|+|+.+..|+++++++.+++|+++++.+.++|+++||+
T Consensus 63 l~~~~~~v~t~~~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~ 142 (171)
T cd07017 63 MQYIKPPVSTICLGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQ 142 (171)
T ss_pred HHhcCCCEEEEEEeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 46778999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHhhhcCCceecHHHHHHcCcceee
Q psy5228 81 SVKKISQDTDRDNFMSAKMAMEYCLIDKI 109 (114)
Q Consensus 81 s~~~i~~~m~~~~~lta~eA~~~GliD~I 109 (114)
+.+++.++|++++||||+||++|||||+|
T Consensus 143 ~~~~i~~~~~~~~~lta~EA~e~GiiD~V 171 (171)
T cd07017 143 PLEKIEKDTDRDRYMSAEEAKEYGLIDKI 171 (171)
T ss_pred CHHHHHHHhhCCccccHHHHHHcCCCccC
Confidence 99999999999999999999999999987
No 15
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.94 E-value=1.5e-26 Score=161.83 Aligned_cols=106 Identities=31% Similarity=0.405 Sum_probs=102.5
Q ss_pred cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy5228 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHS 81 (114)
Q Consensus 2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s 81 (114)
+.++.||+|++.|.|+|+|++|+++|+. |++.|+|+|++|+|+.+..|+..+++...++++++++.+.+.|++++|++
T Consensus 55 ~~~~~pvi~~v~g~a~s~g~~ia~a~d~--~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~ 132 (160)
T cd07016 55 KRHKGKVTVKIDGLAASAASVIAMAGDE--VEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLS 132 (160)
T ss_pred HhcCCCEEEEEcchHHhHHHHHHhcCCe--EEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4678999999999999999999999998 99999999999999998899999999999999999999999999999999
Q ss_pred HHHHHhhhcCCceecHHHHHHcCcceee
Q psy5228 82 VKKISQDTDRDNFMSAKMAMEYCLIDKI 109 (114)
Q Consensus 82 ~~~i~~~m~~~~~lta~eA~~~GliD~I 109 (114)
.+++.+++.+++||+++||+++||||+|
T Consensus 133 ~~~i~~~~~~~~~l~a~eA~~~GliD~v 160 (160)
T cd07016 133 EEEISALMDAETWLTAQEAVELGFADEI 160 (160)
T ss_pred HHHHHHHHhCCeECcHHHHHHcCCCCcC
Confidence 9999999999999999999999999986
No 16
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=99.91 E-value=1.4e-24 Score=154.58 Aligned_cols=105 Identities=20% Similarity=0.271 Sum_probs=93.8
Q ss_pred CcccCCCeEEEEe---hhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCC-----HHHHHHHHHHHHHHHHHHHH
Q psy5228 1 MQFIKPNVSTLCI---GLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQ-----ASDIEIQAREILYLRQRLNE 72 (114)
Q Consensus 1 m~~~~~~V~t~~~---G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~-----~~~l~~~~~~l~~~~~~~~~ 72 (114)
|++.+.||.|+|. |.|+|+|++|+++|++ |+|.|+|+++.|+|..+ .|+ ..+.+....++.+++.
T Consensus 54 i~~~~~pvv~~v~p~g~~AaSag~~I~~a~~~--i~m~p~s~iG~~~pi~~-~g~~~~~~~~~~ki~~~~~~~~r~---- 126 (172)
T cd07015 54 IQQSKIPVIIYVYPPGASAASAGTYIALGSHL--IAMAPGTSIGACRPILG-YSQNGSIIEAPPKITNYFIAYIKS---- 126 (172)
T ss_pred HHhcCcCEEEEEecCCCeehhHHHHHHHhcCc--eEECCCCEEEEcccccc-CCCCCccccchHHHHHHHHHHHHH----
Confidence 3567899999999 9999999999999999 99999999999999754 355 5566777777777765
Q ss_pred HHHHHhCCCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228 73 ILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113 (114)
Q Consensus 73 ~ya~~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~ 113 (114)
|++++|++.+.+++++++++|||++||++||+||.|.+++
T Consensus 127 -~A~~~Gr~~~~a~~~v~~~~~lta~EA~~~G~iD~ia~~~ 166 (172)
T cd07015 127 -LAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDI 166 (172)
T ss_pred -HHHHHCcCHHHHHHHHHhhcCcCHHHHHHcCCceeeeCCH
Confidence 9999999999999999999999999999999999998764
No 17
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.90 E-value=2.7e-23 Score=145.05 Aligned_cols=106 Identities=30% Similarity=0.518 Sum_probs=98.2
Q ss_pred cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQ--ASDIEIQAREILYLRQRLNEILSEKTG 79 (114)
Q Consensus 2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~--~~~l~~~~~~l~~~~~~~~~~ya~~tg 79 (114)
+.++.||.+++.|.|+|+|.+|+++|++ |++.|++.+++|+|+.+..+. ..+.+...+.++.+.+.+.+.+++++|
T Consensus 54 ~~~~kpvva~~~g~~~s~g~~la~~~d~--~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~ 131 (161)
T cd00394 54 QASRKPVIAYVGGQAASAGYYIATAANK--IVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRG 131 (161)
T ss_pred HHhCCCEEEEECChhHHHHHHHHhCCCE--EEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4567899999999999999999999998 999999999999999765554 477888889999999999999999999
Q ss_pred CCHHHHHhhhcCCceecHHHHHHcCcceee
Q psy5228 80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKI 109 (114)
Q Consensus 80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~I 109 (114)
++.+++.+.+.++.||+|+||+++||||+|
T Consensus 132 ~~~~~~~~~~~~~~~~~a~eA~~~GLvD~i 161 (161)
T cd00394 132 QTTEKLEEDIEKDLVLTAQEALEYGLVDAL 161 (161)
T ss_pred CCHHHHHHHhcCCcEEcHHHHHHcCCcCcC
Confidence 999999999999999999999999999986
No 18
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.79 E-value=8.4e-19 Score=125.87 Aligned_cols=109 Identities=18% Similarity=0.164 Sum_probs=91.5
Q ss_pred cccCCCeEEEEe---hhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228 2 QFIKPNVSTLCI---GLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKT 78 (114)
Q Consensus 2 ~~~~~~V~t~~~---G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~t 78 (114)
...+.||.+.+. |.|+|+|++|+++||. |++.|+|+|++|.|..+..+...+.....+.+..+.. ....|++++
T Consensus 55 ~~~~kPvia~v~~~~G~AasgG~~iala~D~--iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~ 131 (187)
T cd07020 55 LASPVPVVVYVYPSGARAASAGTYILLAAHI--AAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVA-YIRSLAELR 131 (187)
T ss_pred HhCCCCEEEEEecCCCCchhHHHHHHHhCCc--eeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHH-HHHHHHHHc
Confidence 456899999998 9999999999999999 9999999999999985433332333444555555554 588899999
Q ss_pred CCCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228 79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113 (114)
Q Consensus 79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~ 113 (114)
|.+.+.+++++.++.||+++||+++||+|+|++..
T Consensus 132 G~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~ 166 (187)
T cd07020 132 GRNAEWAEKAVRESLSLTAEEALKLGVIDLIAADL 166 (187)
T ss_pred CCCHHHHHHHHHcCCeecHHHHHHcCCcccccCCH
Confidence 99999999999999999999999999999998753
No 19
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.77 E-value=2.7e-18 Score=122.89 Aligned_cols=104 Identities=18% Similarity=0.182 Sum_probs=88.4
Q ss_pred cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy5228 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHS 81 (114)
Q Consensus 2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s 81 (114)
...+.||.+++.|.|+|+|++|+++|++ ++|.|++.++.|.|.....+...+ +.+......+.+.|++++|++
T Consensus 55 ~~~~~pvva~V~g~AaSaG~~ia~a~d~--i~m~p~a~iG~~~~v~~~~~~~~~-----~K~~~~~~~~~~~~A~~~gr~ 127 (178)
T cd07021 55 LNSPIPTIAYVNDRAASAGALIALAADE--IYMAPGATIGAAEPIPGDGNGAAD-----EKVQSYWRAKMRAAAEKKGRD 127 (178)
T ss_pred HhCCCCEEEEECCchHHHHHHHHHhCCe--EEECCCCeEecCeeEcCCCccchh-----HHHHHHHHHHHHHHHHHhCCC
Confidence 3567899999999999999999999998 999999999999999755443222 234444556677799999999
Q ss_pred HHHHHhhhcCC-------------ceecHHHHHHcCcceeeccc
Q psy5228 82 VKKISQDTDRD-------------NFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 82 ~~~i~~~m~~~-------------~~lta~eA~~~GliD~Ii~~ 112 (114)
.+.++.+++++ .|||++||+++|++|.|.+.
T Consensus 128 ~~~a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~ 171 (178)
T cd07021 128 PDIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGS 171 (178)
T ss_pred HHHHHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECC
Confidence 99999999999 59999999999999999875
No 20
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.64 E-value=2.4e-15 Score=106.80 Aligned_cols=101 Identities=13% Similarity=0.039 Sum_probs=89.8
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSV 82 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~ 82 (114)
..+.||.+++.|.|+|.|..|+++|+. |++.|++.|++|.++.+ ....-..++.+.+.+.+.+++..|++.
T Consensus 69 ~~~kpVia~v~G~a~g~g~~la~a~D~--i~a~~~a~~~~~G~~~~-------~~~~~~~l~~~~~~~~~~v~~~rg~~~ 139 (177)
T cd07014 69 AAGKPVVASGGGNAASGGYWISTPANY--IVANPSTLVGSIGIFGV-------QLADQLSIENGYKRFITLVADNRHSTP 139 (177)
T ss_pred hCCCCEEEEECCchhHHHHHHHHhCCE--EEECCCCeEEEechHhh-------HHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 357899999999999999999999998 99999999999988754 122334677888899999999999999
Q ss_pred HHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 83 KKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 83 ~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
+.+.+++....|++++||+++||||+|...
T Consensus 140 ~~~~~~l~~g~~~~a~~A~~~GLVD~v~~~ 169 (177)
T cd07014 140 EQQIDKIAQGGVWTGQDAKANGLVDSLGSF 169 (177)
T ss_pred HHhHHHhcCcCeEeHHHHHHcCCcccCCCH
Confidence 999999999999999999999999999763
No 21
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.43 E-value=1.5e-12 Score=94.77 Aligned_cols=103 Identities=15% Similarity=0.176 Sum_probs=81.4
Q ss_pred CCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCc---------------------c--------CCC-CHHH
Q psy5228 6 PNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLG---------------------G--------AQG-QASD 55 (114)
Q Consensus 6 ~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~---------------------~--------~~G-~~~~ 55 (114)
.||.+++.|.|+|.|..|+++|++ |++.|++.+....+.. + +.. +..+
T Consensus 62 kpvia~v~g~a~s~g~~la~aaD~--i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~s~~~ 139 (207)
T TIGR00706 62 KPVVASMGGVAASGGYYIAMAADE--IVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRELTPEE 139 (207)
T ss_pred CCEEEEECCccchHHHHHHhcCCE--EEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCCCHHH
Confidence 899999999999999999999998 9999998753322211 1 001 1223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcCCceecHHHHHHcCcceeecc
Q psy5228 56 IEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILK 111 (114)
Q Consensus 56 l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~ 111 (114)
-+..-..|+.+.+.+.+.+++.-|++.++++++++... ++++||+++||||+|..
T Consensus 140 ~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~~~~~~~~-~~~~~A~~~gLvD~i~~ 194 (207)
T TIGR00706 140 RDILQNLVNESYEQFVQVVAKGRNLPVEDVKKFADGRV-FTGRQALKLRLVDKLGT 194 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCCc-ccHHHHHHcCCCcccCC
Confidence 34444577788888999999999999999999988765 59999999999999975
No 22
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.42 E-value=1.6e-12 Score=94.45 Aligned_cols=105 Identities=18% Similarity=0.187 Sum_probs=84.4
Q ss_pred cCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCcee------eee------------cCCccCCC------------CH
Q psy5228 4 IKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRI------MIH------------QPLGGAQG------------QA 53 (114)
Q Consensus 4 ~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~------miH------------~p~~~~~G------------~~ 53 (114)
.+.||.+++.|.|+|+|..|+++|++ |++.|+|.+ +.| +|.....| +.
T Consensus 65 ~~kpvia~v~g~~~s~g~~lA~aaD~--i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~~s~ 142 (208)
T cd07023 65 AKKPVVASMGDVAASGGYYIAAAADK--IVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLTE 142 (208)
T ss_pred cCCcEEEEECCcchhHHHHHHhhCCE--EEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCCCCH
Confidence 36799999999999999999999998 999999987 444 22111111 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcCCceecHHHHHHcCcceeecc
Q psy5228 54 SDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILK 111 (114)
Q Consensus 54 ~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~ 111 (114)
.+-+.....|+.+.+.+.+.+++..|++.+++.++.+...| ++++|+++||||+|..
T Consensus 143 ~~~e~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~-~a~~A~~~gLiD~i~~ 199 (208)
T cd07023 143 EERAILQALVDDIYDQFVDVVAEGRGMSGERLDKLADGRVW-TGRQALELGLVDELGG 199 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcCCcEE-EHHHHHHcCCCcccCC
Confidence 34455566788889999999999999999999998887665 7999999999999975
No 23
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.38 E-value=5.9e-12 Score=91.99 Aligned_cols=103 Identities=15% Similarity=0.158 Sum_probs=82.9
Q ss_pred CCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCcee------eeecCCcc------------CCC------------CHH
Q psy5228 5 KPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRI------MIHQPLGG------------AQG------------QAS 54 (114)
Q Consensus 5 ~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~------miH~p~~~------------~~G------------~~~ 54 (114)
+.||.+++.|.|+|.|..++++|++ +++.|++.+ +.|..... ..| +..
T Consensus 73 ~KpViA~v~g~a~s~gy~lA~~aD~--i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~ 150 (214)
T cd07022 73 GKPIVAFVNGLAASAAYWIASAADR--IVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDE 150 (214)
T ss_pred CCCEEEEECCchhhHHHHHHhcCCE--EEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHH
Confidence 3899999999999999999999998 999999985 33332100 011 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcCCceecHHHHHHcCcceeecc
Q psy5228 55 DIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILK 111 (114)
Q Consensus 55 ~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~ 111 (114)
+-+..-+.|+.+.+.+.+.+++..|++.+++.+.+ ...+++++|+++||||+|..
T Consensus 151 ~re~~~~~l~~~~~~f~~~V~~~R~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~ 205 (214)
T cd07022 151 ARARLQAEVDALYAMFVAAVARNRGLSAAAVRATE--GGVFRGQEAVAAGLADAVGT 205 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhh--cCeeeHHHHHHcCCCcccCC
Confidence 44555667788899999999999999999999888 66689999999999999975
No 24
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.33 E-value=2.9e-11 Score=88.26 Aligned_cols=107 Identities=12% Similarity=0.015 Sum_probs=83.3
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCC---------------------c-c---CC-C---CH
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPL---------------------G-G---AQ-G---QA 53 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~---------------------~-~---~~-G---~~ 53 (114)
..+.||.+++.|.|+|.|..|+++|+. +++.|++.+...-.. . + .. . +.
T Consensus 68 ~~~kpVia~v~g~a~s~gy~la~~aD~--i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~~s~ 145 (211)
T cd07019 68 AAGKPVVVSAGGAAASGGYWISTPANY--IVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPP 145 (211)
T ss_pred hCCCCEEEEECCeehhHHHHHHHhCCE--EEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCCCCH
Confidence 357899999999999999999999998 999999887433211 1 1 00 0 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 54 SDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 54 ~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
.+-+.....++.+.+.+.+..++..+++++++.+.. ++.+++++||+++||||+|...
T Consensus 146 e~r~~~~~~ld~~~~~f~~~Va~~R~~~~~~l~~~~-~~~~~~~~~A~~~GLvD~i~~~ 203 (211)
T cd07019 146 EAQLGLQLSIENGYKRFITLVADARHSTPEQIDKIA-QGHVWTGQDAKANGLVDSLGDF 203 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHhc-CCcEEeHHHHHHcCCcccCCCH
Confidence 222233456788889999999999999999998865 4679999999999999998753
No 25
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=99.17 E-value=8.3e-10 Score=76.98 Aligned_cols=105 Identities=21% Similarity=0.212 Sum_probs=78.5
Q ss_pred cCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCC---------------------cc-------CCC--CH
Q psy5228 4 IKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPL---------------------GG-------AQG--QA 53 (114)
Q Consensus 4 ~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~---------------------~~-------~~G--~~ 53 (114)
.+.||.+++.|.++|.+=+|+++|++ .++.|.+.+...-.. .+ ... +.
T Consensus 5 ~~KpV~a~~~~~~~S~~Y~lAs~ad~--I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s~ 82 (154)
T PF01343_consen 5 SGKPVVAYAEGYAASGAYYLASAADE--IYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMSE 82 (154)
T ss_dssp TT--EEEEEEEEEETHHHHHHTTSSE--EEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--H
T ss_pred cCCeEEEEECCcchhHHHHHHHcCCE--EEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCCH
Confidence 46799999999999999999999998 999999987765421 11 011 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcCCceecHHHHHHcCcceeecc
Q psy5228 54 SDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILK 111 (114)
Q Consensus 54 ~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~ 111 (114)
.+-+..-+.|+.+.+.+.+..++.-|++.+++.++.+. ..|++++|+++||||+|..
T Consensus 83 ~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~-~~~~~~~A~~~GLiD~i~~ 139 (154)
T PF01343_consen 83 EERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADG-GVFTAQQALELGLIDEIGT 139 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCC-HEEEHHHHHHTTSSSEETS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhh-ccccHHHHHHcCchhhcCC
Confidence 34444556778888899999999999999999998877 7789999999999999975
No 26
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.17 E-value=3.8e-10 Score=93.31 Aligned_cols=105 Identities=14% Similarity=0.074 Sum_probs=86.2
Q ss_pred cCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCcee------eeecC------------C---cc-------C-CCCHH
Q psy5228 4 IKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRI------MIHQP------------L---GG-------A-QGQAS 54 (114)
Q Consensus 4 ~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~------miH~p------------~---~~-------~-~G~~~ 54 (114)
.+.||.+.+.|.|+|.|-.|+++|++ +++.|++.+ +.+.. . ++ . ..+..
T Consensus 377 ~gKPVva~~~g~aaSggY~iA~aaD~--I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~~~~t~~ 454 (584)
T TIGR00705 377 RGKPVIVSMGAMAASGGYWIASAADY--IVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLLRPLTAE 454 (584)
T ss_pred CCCcEEEEECCccccHHHHHHHhCCE--EEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCCCCCCHH
Confidence 35799999999999999999999998 999999976 54421 0 00 1 12455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcCCceecHHHHHHcCcceeecc
Q psy5228 55 DIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILK 111 (114)
Q Consensus 55 ~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~ 111 (114)
+.+.....++...+.+.+..++..|++.++++.+.+...| +++||+++||||+|..
T Consensus 455 ~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~-tg~eA~~~GLVD~ig~ 510 (584)
T TIGR00705 455 DQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVW-TGEDAVSNGLVDALGG 510 (584)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCc-CHHHHHHcCCcccCCC
Confidence 6667777888889999999999999999999998887666 9999999999999854
No 27
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.01 E-value=4.5e-09 Score=77.22 Aligned_cols=104 Identities=14% Similarity=0.050 Sum_probs=82.0
Q ss_pred cCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCcc---------------------C---CC--------
Q psy5228 4 IKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGG---------------------A---QG-------- 51 (114)
Q Consensus 4 ~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~---------------------~---~G-------- 51 (114)
.+.||.+++.| |+|.+-+|+++|++ +++.|++.+.+.-+... - .+
T Consensus 77 ~~kpVia~~~~-~~sggy~lasaad~--I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~ 153 (222)
T cd07018 77 SGKPVIAYADG-YSQGQYYLASAADE--IYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDM 153 (222)
T ss_pred hCCeEEEEeCC-CCchhhhhhhhCCE--EEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccC
Confidence 35799999887 89999999999998 99999999999743311 0 01
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcCCceecHHHHHHcCcceeecc
Q psy5228 52 QASDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILK 111 (114)
Q Consensus 52 ~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~ 111 (114)
+..+-+..-+.++.+.+.+.+..++.-+++.+++++..+ ...+++++|++.||||+|..
T Consensus 154 s~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~-~~~~~~~~A~~~GLvD~i~~ 212 (222)
T cd07018 154 SPEAREQTQALLDSLWDQYLADVAASRGLSPDALEALID-LGGDSAEEALEAGLVDGLAY 212 (222)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH-cCCcHHHHHHHCCCCCcCCc
Confidence 112223334566778888999999999999999998877 66889999999999999875
No 28
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=98.58 E-value=2e-07 Score=66.15 Aligned_cols=88 Identities=17% Similarity=0.158 Sum_probs=66.7
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKTG 79 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~tg 79 (114)
.++.||.+.+.|.|.+.|..+++++|. |++.++++|.+..+..+.. |....+ .++.|
T Consensus 91 ~~~~p~Ia~v~G~a~g~G~~la~~~D~--~i~~~~~~~~~pe~~~G~~p~~g~~~~l------------------~~~~g 150 (195)
T cd06558 91 RLPKPVIAAVNGAALGGGLELALACDI--RIAAEDAKFGLPEVKLGLVPGGGGTQRL------------------PRLVG 150 (195)
T ss_pred cCCCCEEEEECCeeecHHHHHHHhCCE--EEecCCCEEechhhhcCCCCCCcHHHHH------------------HHHhC
Confidence 468899999999999999999999998 9999999999888765532 332222 11112
Q ss_pred CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
.....+++-....++++||+++||+|++++.
T Consensus 151 --~~~a~~~~l~g~~~~a~ea~~~Glv~~~~~~ 181 (195)
T cd06558 151 --PARARELLLTGRRISAEEALELGLVDEVVPD 181 (195)
T ss_pred --HHHHHHHHHcCCccCHHHHHHcCCCCeecCh
Confidence 3333444455788899999999999999875
No 29
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.7e-07 Score=74.97 Aligned_cols=103 Identities=18% Similarity=0.190 Sum_probs=81.6
Q ss_pred ccCCCeEEEEe---hhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228 3 FIKPNVSTLCI---GLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTG 79 (114)
Q Consensus 3 ~~~~~V~t~~~---G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg 79 (114)
.++.||+.++. +.|+|+||+|+++++. -+|.|++.+---+|-... |++.+-+. ..+......+-.++.-|
T Consensus 83 ~s~vPV~~yv~p~ga~AaSAGtyI~m~~hi--aaMAPgT~iGaa~Pi~~~-g~~~~~~~----~~n~~~ay~~~~A~~~g 155 (436)
T COG1030 83 NSPVPVIGYVVPDGARAASAGTYILMATHI--AAMAPGTNIGAATPIAGG-GTSAKEAN----TTNAAVAYIRSLAEERG 155 (436)
T ss_pred cCCCCEEEEEcCCCcchhchhhHHHHhcCh--hhhCCCCcccccceecCC-CCCccchh----hHHHHHHHHHHHHHHcC
Confidence 45778888776 5799999999999998 899999999999997543 22211111 33334455667888999
Q ss_pred CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
+..+-.+++.+++.-++++||.++|+||-|-.+
T Consensus 156 RN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~ 188 (436)
T COG1030 156 RNPTWAERFVTENLSLTAEEALRQGVIDLIARD 188 (436)
T ss_pred CChHHHHHHhhhccCCChhHHHhcCccccccCC
Confidence 999999999999999999999999999987653
No 30
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.54 E-value=7.2e-07 Score=69.00 Aligned_cols=103 Identities=19% Similarity=0.145 Sum_probs=77.8
Q ss_pred CeEEEEehhhhhHHHHHHhcCCCCcEEecCCceee------eecCC-----------------------ccCCCCHH-HH
Q psy5228 7 NVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIM------IHQPL-----------------------GGAQGQAS-DI 56 (114)
Q Consensus 7 ~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~m------iH~p~-----------------------~~~~G~~~-~l 56 (114)
||++.+-++|||.|.+|.+++++ .++.|+|.+- .|... +.+..... +-
T Consensus 130 PV~v~v~~~AASGGY~IA~aAd~--I~a~p~si~GSIGVi~~~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~ 207 (317)
T COG0616 130 PVVVSVGGYAASGGYYIALAADK--IVADPSSITGSIGVISGAPNFEELLEKLGVEKEVITAGEYKDILSPFRPLTEEER 207 (317)
T ss_pred CEEEEECCeecchhhhhhccCCE--EEecCCceeeeceeEEecCCHHHHHHhcCCceeeeeccccccccCcccCCCHHHH
Confidence 89999999999999999999998 9999998653 22210 01111222 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 57 EIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 57 ~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
+..-..++...+.+.+..++..+.+.++ .........+++++|++.||||++.+.
T Consensus 208 ~~~q~~~~e~y~~F~~~V~~~R~~~~~~-~~~~a~g~v~~g~~A~~~gLVDelg~~ 262 (317)
T COG0616 208 EILQKEIDETYDEFVDKVAEGRGLSDEA-VDKLATGRVWTGQQALELGLVDELGGL 262 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCChhH-HHHHhccceecHHHhhhcCCchhcCCH
Confidence 3333567777888899999999999999 555566777799999999999998753
No 31
>PRK11778 putative inner membrane peptidase; Provisional
Probab=98.41 E-value=5.8e-06 Score=64.47 Aligned_cols=103 Identities=16% Similarity=0.104 Sum_probs=71.5
Q ss_pred CCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCc---------------------c--------CCC-CHH
Q psy5228 5 KPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLG---------------------G--------AQG-QAS 54 (114)
Q Consensus 5 ~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~---------------------~--------~~G-~~~ 54 (114)
+.||++.+.++|+|.|=+|+++|++ .++.|.|.+...-+.. | +.. +..
T Consensus 154 ~kpVva~v~~~AASggY~iAsaAD~--I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf~~~see 231 (330)
T PRK11778 154 GIPLTVAVDKVAASGGYMMACVADK--IIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFGENTEE 231 (330)
T ss_pred CCCEEEEECCchhhHHHHHHHhCCE--EEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCCCCCCHH
Confidence 4699999999999999999999998 9999998765443211 0 001 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 55 DIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 55 ~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
+-+..-+.|+...+.+.+..++.-+ ..++++..+. ..+++++|+++||||+|...
T Consensus 232 ~Re~~q~~Ld~~y~~F~~~Va~~R~--~l~~~~va~G-~v~~g~~Al~~GLVD~Ig~~ 286 (330)
T PRK11778 232 GREKFREELEETHQLFKDFVQRYRP--QLDIDKVATG-EHWYGQQALELGLVDEIQTS 286 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC--cCCHHHHHhC-CCcCHHHHHHCCCCCcCCCH
Confidence 3334445666677777777777553 2334444444 45799999999999998753
No 32
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=98.40 E-value=1e-06 Score=65.87 Aligned_cols=88 Identities=16% Similarity=-0.010 Sum_probs=67.4
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSV 82 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~ 82 (114)
.++.||.+.+-|.|.+.|.-|++++|- |++.++++|.+-...-|..|-..- +.+..| .
T Consensus 95 ~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~~~~~~------------------l~~~~g--~ 152 (257)
T PRK06495 95 ECAKPVIAAVNGPALGAGLGLVASCDI--IVASENAVFGLPEIDVGLAGGGKH------------------AMRLFG--H 152 (257)
T ss_pred hCCCCEEEEECCeeehhHHHHHHhCCE--EEecCCCEeeChhhccCccccHHH------------------HHHHhC--H
Confidence 467899999999999999999999998 999999998886666555433211 112222 3
Q ss_pred HHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 83 KKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 83 ~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
....+++-....++++||+++||||+|+++
T Consensus 153 ~~a~~lll~g~~~~a~eA~~~GLv~~vv~~ 182 (257)
T PRK06495 153 SLTRRMMLTGYRVPAAELYRRGVIEACLPP 182 (257)
T ss_pred HHHHHHHHcCCeeCHHHHHHcCCcceecCH
Confidence 344556666778999999999999999864
No 33
>PRK10949 protease 4; Provisional
Probab=98.36 E-value=5.7e-06 Score=69.15 Aligned_cols=104 Identities=13% Similarity=0.125 Sum_probs=78.0
Q ss_pred CCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCcee------eeecCC-------------------cc---CCC-CHHH
Q psy5228 5 KPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRI------MIHQPL-------------------GG---AQG-QASD 55 (114)
Q Consensus 5 ~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~------miH~p~-------------------~~---~~G-~~~~ 55 (114)
+.||.+..-++|+|.|=+|++++++ .++.|++.. +.|.-. .. ... +..+
T Consensus 396 gKPVvas~~~~aASggY~iA~aad~--I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~~~~~~~s~e~ 473 (618)
T PRK10949 396 GKPVVVSMGGMAASGGYWISTPANY--IVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADVSITKALPPEF 473 (618)
T ss_pred CCcEEEEECCCCccHHHHHHHhcCE--EEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCccccCCCCHHH
Confidence 4799999999999999999999998 999997653 333210 00 001 1223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcCCceecHHHHHHcCcceeecc
Q psy5228 56 IEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILK 111 (114)
Q Consensus 56 l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~ 111 (114)
-+..-..++..-+.+.+..++.-+++.+++++.. +..-+|+++|++.||||++..
T Consensus 474 ~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v~~ia-~Grv~tg~~A~~~GLVD~lG~ 528 (618)
T PRK10949 474 QQMMQLSIENGYKRFITLVADSRHKTPEQIDKIA-QGHVWTGQDAKANGLVDSLGD 528 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHh-cCCcccHHHHHHcCCCccCCC
Confidence 3334456677778889999999999999998754 556789999999999999865
No 34
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=98.35 E-value=1.5e-06 Score=63.96 Aligned_cols=91 Identities=19% Similarity=0.243 Sum_probs=63.3
Q ss_pred cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCC-ceeeeecCCccCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPN-SRIMIHQPLGGAQ-GQASDIEIQAREILYLRQRLNEILSEKTG 79 (114)
Q Consensus 2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~-s~~miH~p~~~~~-G~~~~l~~~~~~l~~~~~~~~~~ya~~tg 79 (114)
..++.||.+.+.|.|.+.|.-|++++|. |++.++ ++|.+-....|.. ... - ...+.++.|
T Consensus 88 ~~~~kPvIAav~G~a~GgG~~lal~~D~--rva~~~~a~f~~pe~~~Gl~~~~~-~---------------~~~l~~~~g 149 (229)
T PRK06213 88 LSHPKPVIVACTGHAIAKGAFLLLSADY--RIGVHGPFKIGLNEVAIGMTMPHA-A---------------IELARDRLT 149 (229)
T ss_pred HcCCCCEEEEEcCeeeHHHHHHHHhCCe--eeEecCCcEEECchhhhCCcCChH-H---------------HHHHHHHcC
Confidence 3568999999999999999999999998 999999 8877644443321 110 0 001111212
Q ss_pred CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
.....+++-....++++||+++||||+|+..
T Consensus 150 --~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~ 180 (229)
T PRK06213 150 --PSAFQRAVINAEMFDPEEAVAAGFLDEVVPP 180 (229)
T ss_pred --HHHHHHHHHcCcccCHHHHHHCCCceeccCh
Confidence 1223344556678999999999999999864
No 35
>PRK05869 enoyl-CoA hydratase; Validated
Probab=98.35 E-value=1.7e-06 Score=63.60 Aligned_cols=91 Identities=20% Similarity=0.192 Sum_probs=65.0
Q ss_pred cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ-GQASDIEIQAREILYLRQRLNEILSEKTGH 80 (114)
Q Consensus 2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~-G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~ 80 (114)
..++.||.+.+.|.|.+.|..+++++|. |++.++++|-+-...-|.. +-.. ...+.+..|
T Consensus 96 ~~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~----------------~~~l~~~ig- 156 (222)
T PRK05869 96 AAIPKPTVAAITGYALGAGLTLALAADW--RVSGDNVKFGATEILAGLAPSGDG----------------MARLTRAAG- 156 (222)
T ss_pred HhCCCCEEEEEcCEeecHHHHHHHhCCE--EEecCCCEEcCchhccCCCCCccH----------------HHHHHHHhC-
Confidence 3568899999999999999999999998 9999999887765554431 1100 011112222
Q ss_pred CHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
.....+++-...+++++||+++||+|+|++.
T Consensus 157 -~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 187 (222)
T PRK05869 157 -PSRAKELVFSGRFFDAEEALALGLIDEMVAP 187 (222)
T ss_pred -HHHHHHHHHcCCCcCHHHHHHCCCCCEeeCc
Confidence 2233445555668999999999999999864
No 36
>PRK08139 enoyl-CoA hydratase; Validated
Probab=98.32 E-value=2.2e-06 Score=64.46 Aligned_cols=91 Identities=18% Similarity=0.189 Sum_probs=65.3
Q ss_pred cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy5228 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHS 81 (114)
Q Consensus 2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s 81 (114)
..++.||.+.+.|.|.+.|.-+++++|- |++.++++|.+-....|......-. .| .+..|
T Consensus 101 ~~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~~~~-----~l-----------~r~vG-- 160 (266)
T PRK08139 101 VALPQPVIARVHGIATAAGCQLVASCDL--AVAADTARFAVPGVNIGLFCSTPMV-----AL-----------SRNVP-- 160 (266)
T ss_pred HhCCCCEEEEECceeeHHHHHHHHhCCE--EEEeCCCEEeCcccCcCCCCCccHH-----HH-----------HHHhC--
Confidence 3568999999999999999999999998 9999999987755554533211100 01 11122
Q ss_pred HHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 82 VKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 82 ~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
...-.+++-....++++||+++||||+|+++
T Consensus 161 ~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~ 191 (266)
T PRK08139 161 RKQAMEMLLTGEFIDAATAREWGLVNRVVPA 191 (266)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCccEeeCh
Confidence 2333455555677899999999999999875
No 37
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=98.32 E-value=1.9e-06 Score=65.15 Aligned_cols=89 Identities=16% Similarity=0.206 Sum_probs=65.9
Q ss_pred cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC----CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5228 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ----GQASDIEIQAREILYLRQRLNEILSEK 77 (114)
Q Consensus 2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~----G~~~~l~~~~~~l~~~~~~~~~~ya~~ 77 (114)
..++.||.+.+-|.|.+.|.-|++++|- |++.++++|.+..+..|.. |...-+. +.
T Consensus 110 ~~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~------------------~~ 169 (277)
T PRK08258 110 RACPQPIIAAVDGVCAGAGAILAMASDL--RLGTPSAKTAFLFTRVGLAGADMGACALLP------------------RI 169 (277)
T ss_pred HhCCCCEEEEECCeeehHHHHHHHhCCE--EEecCCCEEeccccccCcCCCCchHHHHHH------------------HH
Confidence 3568899999999999999999999998 9999999998877765543 2211111 11
Q ss_pred hCCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 78 TGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 78 tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
.| .....+++-....++++||+++||||+|++.
T Consensus 170 vG--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 202 (277)
T PRK08258 170 IG--QGRASELLYTGRSMSAEEGERWGFFNRLVEP 202 (277)
T ss_pred hC--HHHHHHHHHcCCCCCHHHHHHcCCCcEecCH
Confidence 12 1223344445678999999999999999864
No 38
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=98.31 E-value=2.9e-06 Score=63.47 Aligned_cols=90 Identities=13% Similarity=0.128 Sum_probs=64.1
Q ss_pred cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC-C--CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA-Q--GQASDIEIQAREILYLRQRLNEILSEKT 78 (114)
Q Consensus 2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~-~--G~~~~l~~~~~~l~~~~~~~~~~ya~~t 78 (114)
..++.||.+.+.|.|.+.|.-+++++|. |++.++++|.+-....|. - |-..-+ .+..
T Consensus 89 ~~~~kPvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~~~i 148 (255)
T PRK08150 89 QYGRVPVIAALHGAVVGGGLELASAAHI--RVADESTYFALPEGQRGIFVGGGGSVRV------------------PRLI 148 (255)
T ss_pred HhCCCCEEEEECCEEEcHHHHHHHhCCE--EEEeCCCEEeccccccCCCCCccHHHHH------------------HHHh
Confidence 3568999999999999999999999998 999999988765544342 1 211111 1112
Q ss_pred CCCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228 79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113 (114)
Q Consensus 79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~ 113 (114)
| ...-.+++-....|+++||+++||||+|++..
T Consensus 149 G--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 181 (255)
T PRK08150 149 G--VARMTDMMLTGRVYDAQEGERLGLAQYLVPAG 181 (255)
T ss_pred C--HHHHHHHHHcCCcCCHHHHHHcCCccEeeCch
Confidence 2 22233444455679999999999999998753
No 39
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=98.29 E-value=2.2e-06 Score=64.21 Aligned_cols=91 Identities=14% Similarity=0.121 Sum_probs=65.2
Q ss_pred cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy5228 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHS 81 (114)
Q Consensus 2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s 81 (114)
..++.||.+.+-|.|.+.|.-|.++||- |++.++++|.+=....|..+-.. ...+.+..|
T Consensus 97 ~~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G~p~~~~----------------~~~l~~~iG-- 156 (256)
T PRK06143 97 RHFPVPVIARIPGWCLGGGLELAAACDL--RIAAHDAQFGMPEVRVGIPSVIH----------------AALLPRLIG-- 156 (256)
T ss_pred HhCCCCEEEEECCEEeehhHHHHHhCCE--EEecCCCEEeCCccccCCCCccH----------------HHHHHHhcC--
Confidence 3568899999999999999999999998 99999998877444434311100 011222222
Q ss_pred HHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 82 VKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 82 ~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
.....+++-....++++||+++||||+|+++
T Consensus 157 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 187 (256)
T PRK06143 157 WARTRWLLLTGETIDAAQALAWGLVDRVVPL 187 (256)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCcCeecCH
Confidence 2334455556678999999999999999874
No 40
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=98.29 E-value=2.3e-06 Score=63.87 Aligned_cols=89 Identities=11% Similarity=0.054 Sum_probs=65.0
Q ss_pred cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy5228 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHS 81 (114)
Q Consensus 2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s 81 (114)
..++.||.+.+-|.|.+.|.-|+++||- |++.++++|..=...-|..|...- +.+..|
T Consensus 91 ~~~~kPvIAav~G~a~GgG~~Lal~cD~--ria~~~a~f~~pe~~~G~~g~~~~------------------l~~~vg-- 148 (249)
T PRK07938 91 YECAVPVIAAVHGFCLGGGIGLVGNADV--IVASDDATFGLPEVDRGALGAATH------------------LQRLVP-- 148 (249)
T ss_pred HhCCCCEEEEEcCEEeehHHHHHHhCCE--EEEeCCCEeeCccceecCchhHHH------------------HHHhcC--
Confidence 3568899999999999999999999998 999999988774444444332111 111112
Q ss_pred HHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 82 VKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 82 ~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
...-.+++-....++++||+++||||+|+++
T Consensus 149 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 179 (249)
T PRK07938 149 QHLMRALFFTAATITAAELHHFGSVEEVVPR 179 (249)
T ss_pred HHHHHHHHHhCCcCCHHHHHHCCCccEEeCH
Confidence 2333445556678999999999999999864
No 41
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.28 E-value=2.9e-06 Score=63.42 Aligned_cols=90 Identities=14% Similarity=0.024 Sum_probs=63.8
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSV 82 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~ 82 (114)
.++.||.+.+-|.|.+.|..|++++|. |++.++++|.+....-|.... .- ...+..+.| .
T Consensus 94 ~~~kPvIaav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl~p~---~~-------------~~~l~~~vg--~ 153 (255)
T PRK07112 94 TGPYVTIAHVRGKVNAGGIGFVAASDI--VIADETAPFSLSELLFGLIPA---CV-------------LPFLIRRIG--T 153 (255)
T ss_pred cCCCCEEEEEecEEEcchhHHHHcCCE--EEEcCCCEEeCchhhhccCcc---hh-------------hHHHHHHhC--H
Confidence 468899999999999999999999998 999999999776555443211 00 001112222 2
Q ss_pred HHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 83 KKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 83 ~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
....+++-...-++++||+++||||+|+++
T Consensus 154 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 183 (255)
T PRK07112 154 QKAHYMTLMTQPVTAQQAFSWGLVDAYGAN 183 (255)
T ss_pred HHHHHHHHhCCcccHHHHHHcCCCceecCc
Confidence 233344445567999999999999999864
No 42
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=98.26 E-value=4.2e-06 Score=62.47 Aligned_cols=89 Identities=12% Similarity=0.161 Sum_probs=64.2
Q ss_pred cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT 78 (114)
Q Consensus 2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t 78 (114)
+.++.||.+.+.|.|.+.|..+++++|- |++.++++|......-|. .|-...+ .+..
T Consensus 89 ~~~~kPvIAav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~~~v 148 (255)
T PRK06563 89 RRLSKPLVVAVQGYCLTLGIELMLAADI--VVAADNTRFAQLEVQRGILPFGGATLRF------------------PQAA 148 (255)
T ss_pred hcCCCCEEEEEcCeeecHHHHHHHhCCE--EEecCCCEEeChhhhcCCCCCccHHHHH------------------HHHh
Confidence 4578999999999999999999999998 999999998876655442 1221111 1111
Q ss_pred CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
| ...-.+++-....++++||+++||||+|++.
T Consensus 149 G--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 180 (255)
T PRK06563 149 G--WGNAMRYLLTGDEFDAQEALRLGLVQEVVPP 180 (255)
T ss_pred h--HHHHHHHHHcCCCcCHHHHHHcCCCcEeeCH
Confidence 2 1222344445567899999999999999864
No 43
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=98.26 E-value=3.4e-06 Score=62.98 Aligned_cols=89 Identities=18% Similarity=0.119 Sum_probs=65.3
Q ss_pred cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKT 78 (114)
Q Consensus 2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~t 78 (114)
..++.||.+.+.|.|.+.|.-|++++|- |++.++++|..-...-|.. |-..- +.+..
T Consensus 89 ~~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~------------------l~~~i 148 (255)
T PRK09674 89 QAFNKPLIAAVNGYALGAGCELALLCDI--VIAGENARFGLPEITLGIMPGAGGTQR------------------LIRSV 148 (255)
T ss_pred HhCCCCEEEEECCEeehHHHHHHHhCCE--EEecCCCEEeCchhhcCCCCCccHHHH------------------HHHHh
Confidence 3568999999999999999999999998 9999999998766654431 21111 11222
Q ss_pred CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
| ...-.+++-....|+++||+++||||+|+++
T Consensus 149 g--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 180 (255)
T PRK09674 149 G--KSLASQMVLTGESITAQQAQQAGLVSEVFPP 180 (255)
T ss_pred C--HHHHHHHHHcCCccCHHHHHHcCCCcEecCh
Confidence 2 2233444445567999999999999999865
No 44
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=98.24 E-value=5.1e-06 Score=62.11 Aligned_cols=88 Identities=11% Similarity=0.052 Sum_probs=65.0
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKTG 79 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~tg 79 (114)
..+.||.+.+.|.|.+.|..|++++|- |++.++++|-+....-|.. |-..-+ .++.
T Consensus 96 ~~~kpvIAav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~~~v- 154 (260)
T PRK07511 96 AFPKPVIAAVEGAAAGAGFSLALACDL--LVAARDAKFVMAYVKVGLTPDGGGSWFL------------------ARAL- 154 (260)
T ss_pred cCCCCEEEEECCeeehHHHHHHHhCCE--EEeeCCCEEeccccccCcCCCchHHHHH------------------HHHh-
Confidence 468899999999999999999999998 9999999988766554432 211111 1111
Q ss_pred CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
......+++-....++++||+++||||+|++.
T Consensus 155 -g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 186 (260)
T PRK07511 155 -PRQLATELLLEGKPISAERLHALGVVNRLAEP 186 (260)
T ss_pred -CHHHHHHHHHhCCCCCHHHHHHcCCccEeeCc
Confidence 22334445555678999999999999999865
No 45
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=98.24 E-value=3.6e-06 Score=63.13 Aligned_cols=88 Identities=10% Similarity=0.066 Sum_probs=65.1
Q ss_pred cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKT 78 (114)
Q Consensus 2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~t 78 (114)
+.++.||.+.+.|.|.+.|.-|++++|. |++.++++|.+-...-|.. |-.. + ..+
T Consensus 97 ~~~~kPvIaav~G~a~GgG~~lala~D~--ria~~~a~f~~pe~~~Gl~p~~g~~~-~------------------~~~- 154 (262)
T PRK07468 97 NDLPKPLIGRIQGQAFGGGVGLISVCDV--AIAVSGARFGLTETRLGLIPATISPY-V------------------VAR- 154 (262)
T ss_pred HcCCCCEEEEECCEEEhHHHHHHHhCCE--EEEeCCCEEeCchhccCCCcccchhh-H------------------Hhh-
Confidence 4578999999999999999999999998 9999999877655543321 1110 1 112
Q ss_pred CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
.......+++-...-++++||+++||||+|++.
T Consensus 155 -vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~ 187 (262)
T PRK07468 155 -MGEANARRVFMSARLFDAEEAVRLGLLSRVVPA 187 (262)
T ss_pred -ccHHHHHHHHHhCCccCHHHHHHcCCcceecCH
Confidence 222334456666778999999999999999864
No 46
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=98.24 E-value=4.4e-06 Score=62.53 Aligned_cols=90 Identities=12% Similarity=0.019 Sum_probs=63.4
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSV 82 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~ 82 (114)
.++.||.+.+.|.|.+.|.-|++++|- |++.++++|..-...-|.... .- . ..+.+..| .
T Consensus 97 ~~~kPvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~---~g--~-----------~~l~~~vg--~ 156 (262)
T PRK05995 97 RCPKPVIARVHGDAYAGGMGLVAACDI--AVAADHAVFCLSEVRLGLIPA---TI--S-----------PYVIRAMG--E 156 (262)
T ss_pred cCCCCEEEEECCEEEhhHHHHHHhCCE--EEeeCCCEEeCcccccccCcc---ch--H-----------HHHHHHhC--H
Confidence 468899999999999999999999998 999999998775554443211 00 0 00111222 2
Q ss_pred HHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 83 KKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 83 ~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
..-.+++-...-++++||+++||||+|+..
T Consensus 157 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 186 (262)
T PRK05995 157 RAARRYFLTAERFDAAEALRLGLVHEVVPA 186 (262)
T ss_pred HHHHHHHHcCCccCHHHHHHcCCCCeecCH
Confidence 333344445566899999999999999853
No 47
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=98.23 E-value=4.6e-06 Score=62.49 Aligned_cols=88 Identities=14% Similarity=0.125 Sum_probs=62.8
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTG 79 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg 79 (114)
.++.||.+.+.|.|.+.|.-+++++|- |++.++++|..=...-|. .|....+. ++.
T Consensus 92 ~~~kPvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G~~p~~g~~~~l~------------------~~v- 150 (261)
T PRK03580 92 DLDKPVIAAVNGYAFGGGFELALAADF--IVCADNASFALPEAKLGIVPDSGGVLRLP------------------KRL- 150 (261)
T ss_pred hCCCCEEEEECCeeehHHHHHHHHCCE--EEecCCCEEeCcccccCcCCCccHHHHHH------------------HHh-
Confidence 468899999999999999999999998 999999988664443332 12211111 111
Q ss_pred CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
......+++-....++++||+++||||+|++.
T Consensus 151 -g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 182 (261)
T PRK03580 151 -PPAIANEMVMTGRRMDAEEALRWGIVNRVVPQ 182 (261)
T ss_pred -CHHHHHHHHHhCCccCHHHHHHcCCCcEecCH
Confidence 22333444445568999999999999999874
No 48
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=98.22 E-value=9.8e-06 Score=61.66 Aligned_cols=101 Identities=18% Similarity=0.195 Sum_probs=66.3
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCH---HH---------------HHH-HHHHH
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQA---SD---------------IEI-QAREI 63 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~---~~---------------l~~-~~~~l 63 (114)
..+.++++++-..|.|+||+|++++++ .+|.|+|.+.-=.|..+-.-.+ .. +.. .-+.+
T Consensus 116 ~~~~~v~v~VP~~A~SAGTlIALaADe--IvM~p~a~LGpiDPqi~~~pA~sil~~~~~K~~~~i~D~tlIladia~KAi 193 (285)
T PF01972_consen 116 EHPAKVTVIVPHYAMSAGTLIALAADE--IVMGPGAVLGPIDPQIGQYPAASILKAVEQKPPDEIDDQTLILADIAEKAI 193 (285)
T ss_pred hCCCCEEEEECcccccHHHHHHHhCCe--EEECCCCccCCCCccccCCChHHHHHHHHhccccccCHHHHHHHHHHHHHH
Confidence 346799999999999999999999999 9999999998777764311110 00 111 11334
Q ss_pred HHHHHHHHHHHHHHhCC-CHHHHHhhhcC-----CceecHHHHHHcCc
Q psy5228 64 LYLRQRLNEILSEKTGH-SVKKISQDTDR-----DNFMSAKMAMEYCL 105 (114)
Q Consensus 64 ~~~~~~~~~~ya~~tg~-s~~~i~~~m~~-----~~~lta~eA~~~Gl 105 (114)
...++...+++..+.+. -.++|.+.+.. |.-+|++||+++||
T Consensus 194 ~q~~~~v~~lL~~~~~~eka~~ia~~L~~g~~tHdypi~~eea~~lGL 241 (285)
T PF01972_consen 194 RQVREFVKELLKDKMDEEKAEEIAEKLSSGKWTHDYPITVEEAKELGL 241 (285)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCCHHHHHHcCC
Confidence 44455555555444321 23344445544 45589999999997
No 49
>PLN02888 enoyl-CoA hydratase
Probab=98.21 E-value=2.7e-06 Score=64.03 Aligned_cols=89 Identities=11% Similarity=0.137 Sum_probs=62.9
Q ss_pred cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKT 78 (114)
Q Consensus 2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~t 78 (114)
..++.||.+.+-|.|.+.|..|++++|. |++.++++|..=...-|.. |-..-+ .+..
T Consensus 96 ~~~~kPvIaav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~~~v 155 (265)
T PLN02888 96 ERCRKPIIGAINGFAITAGFEIALACDI--LVASRGAKFIDTHAKFGIFPSWGLSQKL------------------SRII 155 (265)
T ss_pred HhCCCCEEEEECCeeechHHHHHHhCCE--EEecCCCEecCccccccCCCCccHhhHH------------------HHHh
Confidence 3568899999999999999999999998 9999999887644433321 211111 1112
Q ss_pred CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
| ...-.+++-....++++||+++||||+|++.
T Consensus 156 G--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 187 (265)
T PLN02888 156 G--ANRAREVSLTAMPLTAETAERWGLVNHVVEE 187 (265)
T ss_pred C--HHHHHHHHHhCCccCHHHHHHcCCccEeeCh
Confidence 2 2223334444567899999999999999864
No 50
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=98.21 E-value=3.9e-06 Score=62.94 Aligned_cols=90 Identities=13% Similarity=0.137 Sum_probs=64.8
Q ss_pred cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT 78 (114)
Q Consensus 2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t 78 (114)
..++.||.+.+.|.|.+.|.-+++++|. |++.++++|.+..+.-|. .|...-+. +..
T Consensus 100 ~~~~kpvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~~e~~lG~~p~~g~~~~l~------------------~~v 159 (266)
T PRK05981 100 RNLPCPIVTAVNGPAAGVGMSFALMGDL--ILCARSAYFLQAFRRIGLVPDGGSTWLLP------------------RLV 159 (266)
T ss_pred HhCCCCEEEEECCEeehHHHHHHHhCCE--EEecCCCEEechHhhcCCCCCccHHHHHH------------------HHh
Confidence 3568899999999999999999999998 999999999877776443 12211111 111
Q ss_pred CCCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228 79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113 (114)
Q Consensus 79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~ 113 (114)
| .....+++-....|+++||+++||||+|++..
T Consensus 160 g--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 192 (266)
T PRK05981 160 G--KARAMELSLLGEKLPAETALQWGLVNRVVDDA 192 (266)
T ss_pred H--HHHHHHHHHhCCCcCHHHHHHcCCceEeeCHh
Confidence 1 12223333345679999999999999998753
No 51
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=98.20 E-value=2.6e-06 Score=62.89 Aligned_cols=89 Identities=16% Similarity=0.106 Sum_probs=61.7
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC-C--CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA-Q--GQASDIEIQAREILYLRQRLNEILSEKTG 79 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~-~--G~~~~l~~~~~~l~~~~~~~~~~ya~~tg 79 (114)
.++.||.+.+-|.|.+.|+.+++++|. |++.+++.|.+-...-|. - |-..-+.. . .|
T Consensus 88 ~~~kp~Iaav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r----------~--------~g 147 (245)
T PF00378_consen 88 NFPKPTIAAVNGHAVGGGFELALACDF--RIAAEDAKFGFPEVRLGIFPGAGGTFRLPR----------L--------IG 147 (245)
T ss_dssp HSSSEEEEEESSEEETHHHHHHHHSSE--EEEETTTEEETGGGGGTSSSTSTHHHHHHH----------H--------HH
T ss_pred hhhhheeecccccccccccccccccce--EEeecccceeeeecccCcccccccccccce----------e--------ee
Confidence 468899999999999999999999998 999999996655444332 1 22122111 1 11
Q ss_pred CCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228 80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113 (114)
Q Consensus 80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~ 113 (114)
.....+++-....++++||+++||||+|+++.
T Consensus 148 --~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~ 179 (245)
T PF00378_consen 148 --PSRARELLLTGEPISAEEALELGLVDEVVPDE 179 (245)
T ss_dssp --HHHHHHHHHHTCEEEHHHHHHTTSSSEEESGG
T ss_pred --cccccccccccccchhHHHHhhcceeEEcCch
Confidence 11112222344678999999999999998764
No 52
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=98.19 E-value=7.9e-06 Score=61.17 Aligned_cols=88 Identities=15% Similarity=0.183 Sum_probs=64.8
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKTG 79 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~tg 79 (114)
.++.||.+.+.|.|.+.|.-+++++|. |++.++++|..-...-|.. |...- +.+..|
T Consensus 92 ~~~kPvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~------------------l~~~vg 151 (259)
T PRK06494 92 DLDKPIIAAVNGVAMGGGFELALACDL--IVAAENATFALPEPRVGLAALAGGLHR------------------LPRQIG 151 (259)
T ss_pred cCCCCEEEEECCEEecHHHHHHHhCCE--EEEeCCCEEeCcccccCCCCCchHHHH------------------HHHHcC
Confidence 357899999999999999999999998 9999999988766654432 22111 112222
Q ss_pred CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
...-.+++-....++++||+++||||+|+..
T Consensus 152 --~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~ 182 (259)
T PRK06494 152 --LKRAMGMILTGRRVTAREGLELGFVNEVVPA 182 (259)
T ss_pred --HHHHHHHHHcCCcCCHHHHHHcCCCcEecCH
Confidence 3333444555668999999999999999864
No 53
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=98.19 E-value=4.9e-06 Score=62.67 Aligned_cols=89 Identities=12% Similarity=0.047 Sum_probs=65.7
Q ss_pred cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKT 78 (114)
Q Consensus 2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~t 78 (114)
..++.||.+.+.|.|.+.|.-|++++|- |++.++++|.+.....|.. |-..-+. +..
T Consensus 103 ~~~~kPvIaav~G~a~GgG~~LalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~------------------~~v 162 (269)
T PRK06127 103 ADYAKPTIACIRGYCIGGGMGIALACDI--RIAAEDSRFGIPAARLGLGYGYDGVKNLV------------------DLV 162 (269)
T ss_pred HhCCCCEEEEECCEEecHHHHHHHhCCE--EEeeCCCEeeCchhhhCCCCCccHHHHHH------------------HHh
Confidence 3568899999999999999999999998 9999999998877664431 2211221 111
Q ss_pred CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
| .....+++-....++++||+++||||+|++.
T Consensus 163 G--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 194 (269)
T PRK06127 163 G--PSAAKDLFYTARRFDAAEALRIGLVHRVTAA 194 (269)
T ss_pred C--HHHHHHHHHcCCCCCHHHHHHcCCCCEeeCH
Confidence 2 2333444445567999999999999999864
No 54
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=98.19 E-value=6.2e-06 Score=62.57 Aligned_cols=92 Identities=11% Similarity=0.031 Sum_probs=66.5
Q ss_pred cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ-GQASDIEIQAREILYLRQRLNEILSEKTGH 80 (114)
Q Consensus 2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~-G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~ 80 (114)
..++.||.+.+-|.|.+.|.-|++++|. |++.++++|.+-....|.. ...- ....+.+..|
T Consensus 104 ~~~~kPvIAaV~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~lGl~~p~~~---------------~~~~l~~~~G- 165 (278)
T PLN03214 104 LRSRLATVCAIRGACPAGGCAVSLCCDY--RLQTTEGTMGLNEVALGIPVPKFW---------------ARLFMGRVID- 165 (278)
T ss_pred HcCCCCEEEEEcCcccchHHHHHHhCCE--EEecCCCEecCcHHHhCCCCCChh---------------HHHHHHHhcC-
Confidence 3567899999999999999999999998 9999999988755544431 1100 0112233333
Q ss_pred CHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
...-.+++-...-|+++||+++||||+|+..
T Consensus 166 -~~~a~~llltg~~~~a~eA~~~Glv~~vv~~ 196 (278)
T PLN03214 166 -RKVAESLLLRGRLVRPAEAKQLGLIDEVVPA 196 (278)
T ss_pred -HHHHHHHHHcCCccCHHHHHHcCCCcEecCh
Confidence 3444455556677999999999999999864
No 55
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=98.19 E-value=3.9e-06 Score=63.13 Aligned_cols=88 Identities=13% Similarity=0.077 Sum_probs=66.0
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTG 79 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg 79 (114)
.++.||.+.+-|.|.+.|.-|++++|- |++.++++|.+..+.-|. .|-..-+.. .
T Consensus 106 ~~~kPvIaav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~------------------~-- 163 (272)
T PRK06210 106 ALRKPVIAAINGACAGIGLTHALMCDV--RFAADGAKFTTAFARRGLIAEHGISWILPR------------------L-- 163 (272)
T ss_pred hCCCCEEEEECCeeehHHHHHHHhCCE--EEEeCCCEEechHHhcCCCCCCchhhhhHh------------------h--
Confidence 468899999999999999999999998 999999999987766442 122111111 1
Q ss_pred CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
.......+++-...-++++||+++||||+|+.+
T Consensus 164 ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 196 (272)
T PRK06210 164 VGHANALDLLLSARTFYAEEALRLGLVNRVVPP 196 (272)
T ss_pred hCHHHHHHHHHcCCccCHHHHHHcCCcceecCH
Confidence 123344555556677899999999999999864
No 56
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=98.19 E-value=3.9e-06 Score=62.76 Aligned_cols=88 Identities=16% Similarity=0.107 Sum_probs=63.4
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTG 79 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg 79 (114)
.++.||.+.+.|.|.+.|.-|++++|- |++.++++|.+=...-|. .|...-+ .+..|
T Consensus 98 ~~~kPvIaav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~~~vG 157 (260)
T PRK05980 98 AFPKPVIAAVNGLAFGGGCEITEAVHL--AIASERALFAKPEIRLGMPPTFGGTQRL------------------PRLAG 157 (260)
T ss_pred hCCCCEEEEEcCEEEhhhhHHhHhCCE--EEecCCCEecCcccccCCCCCchHhhHH------------------HhhcC
Confidence 468899999999999999999999998 999999988775544332 1221111 11112
Q ss_pred CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
...-.+++-....++++||+++||||+|+++
T Consensus 158 --~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 188 (260)
T PRK05980 158 --RKRALELLLTGDAFSAERALEIGLVNAVVPH 188 (260)
T ss_pred --HHHHHHHHHcCCccCHHHHHHcCCCCcccCH
Confidence 2223444445567999999999999999864
No 57
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=98.19 E-value=4.3e-06 Score=62.48 Aligned_cols=90 Identities=13% Similarity=0.105 Sum_probs=64.1
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSV 82 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~ 82 (114)
.++.||.+.+.|.|.+.|.-|.+++|- |++.++++|.+-...-|..... . ...+.+..| .
T Consensus 87 ~~~kPvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~--~--------------~~~l~~~vg--~ 146 (251)
T TIGR03189 87 DSPVPILVAVRGQCLGGGLEVAAAGNL--MFAAPDAKLGQPEIVLGVFAPA--A--------------SCLLPERMG--R 146 (251)
T ss_pred hCCCCEEEEecCeeeeHHHHHHHhCCE--EEEcCCCEEeCchhhcCCCCCc--h--------------HHHHHHHhC--H
Confidence 468899999999999999999999998 9999999887755443432110 0 001222233 2
Q ss_pred HHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 83 KKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 83 ~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
....+++-...-++++||+++||||+|+++
T Consensus 147 ~~a~~l~ltg~~~~a~eA~~~Glv~~v~~~ 176 (251)
T TIGR03189 147 VAAEDLLYSGRSIDGAEGARIGLANAVAED 176 (251)
T ss_pred HHHHHHHHcCCCCCHHHHHHCCCcceecCc
Confidence 334455545567999999999999999864
No 58
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=98.18 E-value=7.2e-06 Score=61.91 Aligned_cols=88 Identities=18% Similarity=0.083 Sum_probs=63.5
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKTG 79 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~tg 79 (114)
.++.||.+.+.|.|.+.|.-|++++|. |++.++++|.+=.+.-|.. |-..-+ .+..|
T Consensus 105 ~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~~~~~~l------------------~~~vG 164 (273)
T PRK07396 105 TCPKPVIAMVAGYAIGGGHVLHLVCDL--TIAADNAIFGQTGPKVGSFDGGYGASYL------------------ARIVG 164 (273)
T ss_pred hCCCCEEEEECCEEehHHHHHHHhCCE--EEeeCCcEEecccccccccCCchHHHHH------------------HHHhh
Confidence 468899999999999999999999998 9999999988765654422 111111 11112
Q ss_pred CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
.....+++-....++++||+++||||+|++.
T Consensus 165 --~~~a~~l~ltg~~~~A~eA~~~GLv~~vv~~ 195 (273)
T PRK07396 165 --QKKAREIWFLCRQYDAQEALDMGLVNTVVPL 195 (273)
T ss_pred --HHHHHHHHHhCCCcCHHHHHHcCCcCeecCH
Confidence 1223344445568999999999999999864
No 59
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=98.18 E-value=5.1e-06 Score=61.96 Aligned_cols=89 Identities=13% Similarity=0.124 Sum_probs=63.2
Q ss_pred cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKT 78 (114)
Q Consensus 2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~t 78 (114)
..++.||.+.+.|.|.+.|.-+++++|. |++.++++|.+....-|.. |-..-+.. ..
T Consensus 93 ~~~~kp~Iaav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~G~~p~~g~~~~l~~------------------~~ 152 (259)
T PRK06688 93 AALPKPVVAAVNGPAVGVGVSLALACDL--VYASESAKFSLPFAKLGLCPDAGGSALLPR------------------LI 152 (259)
T ss_pred HcCCCCEEEEECCeeecHHHHHHHhCCE--EEecCCCEecCchhhcCCCCCcchhhHHHH------------------Hh
Confidence 3468899999999999999999999998 9999999998876654432 22111111 11
Q ss_pred CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
| ...-.+++-....++++||+++||||+|+++
T Consensus 153 G--~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~ 184 (259)
T PRK06688 153 G--RARAAEMLLLGEPLSAEEALRIGLVNRVVPA 184 (259)
T ss_pred h--HHHHHHHHHhCCccCHHHHHHcCCcceecCH
Confidence 1 1122223333456999999999999999864
No 60
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=98.17 E-value=4.6e-06 Score=62.56 Aligned_cols=88 Identities=17% Similarity=0.152 Sum_probs=63.1
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKTG 79 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~tg 79 (114)
.++.||.+.+.|.|.+.|.-|++++|- |++.++++|.+-...-|.. |-..-+ .+..|
T Consensus 101 ~~~kpvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G~~p~~g~~~~l------------------~~~vG 160 (266)
T PRK09245 101 NLEVPVIAAVNGPAIGAGCDLACMCDI--RIASETARFAESFVKLGLIPGDGGAWLL------------------PRIIG 160 (266)
T ss_pred cCCCCEEEEECCEeecHHHHHHHhCCE--EEecCCCEEcccccccCcCCCcchhhhH------------------HHHhh
Confidence 468899999999999999999999998 9999999988755554432 221111 11111
Q ss_pred CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
...-.+++-....++++||+++||||+|++.
T Consensus 161 --~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 191 (266)
T PRK09245 161 --MARAAEMAFTGDAIDAATALEWGLVSRVVPA 191 (266)
T ss_pred --HHHHHHHHHcCCCcCHHHHHHcCCcceecCH
Confidence 1122334445568999999999999999864
No 61
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=98.17 E-value=8.1e-06 Score=61.31 Aligned_cols=89 Identities=17% Similarity=0.192 Sum_probs=64.0
Q ss_pred cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC-C--CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA-Q--GQASDIEIQAREILYLRQRLNEILSEKT 78 (114)
Q Consensus 2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~-~--G~~~~l~~~~~~l~~~~~~~~~~ya~~t 78 (114)
..++.||.+.+.|.|.+.|.-+++++|- |++.++++|.+-...-|. - |-..- +.+..
T Consensus 91 ~~~~kPvIAaV~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~------------------l~r~v 150 (258)
T PRK06190 91 PAMRKPVIGAINGAAVTGGLELALACDI--LIASERARFADTHARVGILPGWGLSVR------------------LPQKV 150 (258)
T ss_pred HhCCCCEEEEECCEeecHHHHHHHhCCE--EEEeCCCEEECcccccCcCCCccHHHH------------------HHHHh
Confidence 3568899999999999999999999998 999999998764443332 1 11111 11112
Q ss_pred CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
| ...-.+++-....++++||+++||||+|+++
T Consensus 151 G--~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~ 182 (258)
T PRK06190 151 G--IGRARRMSLTGDFLDAADALRAGLVTEVVPH 182 (258)
T ss_pred C--HHHHHHHHHhCCccCHHHHHHcCCCeEecCH
Confidence 2 3333445556668999999999999999864
No 62
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=98.16 E-value=6.2e-06 Score=61.77 Aligned_cols=89 Identities=18% Similarity=0.106 Sum_probs=64.0
Q ss_pred cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKT 78 (114)
Q Consensus 2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~t 78 (114)
..++.||.+.+.|.|.+.|.-|++++|- |++.++++|.+-.+.-|.. |-..-+. +..
T Consensus 94 ~~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G~~p~~~~~~~l~------------------~~v 153 (259)
T TIGR01929 94 RTCPKPVIAMVNGYAIGGGHVLHVVCDL--TIAAENARFGQTGPKVGSFDGGYGSSYLA------------------RIV 153 (259)
T ss_pred HhCCCCEEEEEcCEEehHHHHHHHhCCE--EEecCCCEecCcccccccCCCccHHHHHH------------------HHh
Confidence 3468899999999999999999999998 9999999998877765431 2211111 111
Q ss_pred CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
| ...-.+++-...-++++||+++||||+|++.
T Consensus 154 G--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 185 (259)
T TIGR01929 154 G--QKKAREIWFLCRQYDAEQALDMGLVNTVVPL 185 (259)
T ss_pred H--HHHHHHHHHhCCccCHHHHHHcCCcccccCH
Confidence 1 1122333334457999999999999999864
No 63
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=98.16 E-value=7.7e-06 Score=61.18 Aligned_cols=90 Identities=11% Similarity=0.071 Sum_probs=63.9
Q ss_pred cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKT 78 (114)
Q Consensus 2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~t 78 (114)
..++.||.+.+-|.|.+.|.-|++++|- |++.++++|.+-...-|.. |-..-+. +..
T Consensus 92 ~~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~------------------~~i 151 (258)
T PRK09076 92 SAFRGVSIAAINGYAMGGGLECALACDI--RIAEEQAQMALPEASVGLLPCAGGTQNLP------------------WLV 151 (258)
T ss_pred HhCCCCEEEEECCEEecHHHHHHHhCCE--EEecCCCEeeCcccccCCCCCccHHHHHH------------------HHh
Confidence 3568899999999999999999999998 9999999988765554421 2211111 111
Q ss_pred CCCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228 79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113 (114)
Q Consensus 79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~ 113 (114)
| .....+++-....++++||+++||||+|++..
T Consensus 152 G--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 184 (258)
T PRK09076 152 G--EGWAKRMILCGERVDAATALRIGLVEEVVEKG 184 (258)
T ss_pred C--HHHHHHHHHcCCcCCHHHHHHCCCCceecCch
Confidence 2 12223344445678999999999999998753
No 64
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=98.16 E-value=6.9e-06 Score=61.65 Aligned_cols=89 Identities=11% Similarity=0.087 Sum_probs=63.8
Q ss_pred cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC-C--CHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ-G--QASDIEIQAREILYLRQRLNEILSEKT 78 (114)
Q Consensus 2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~-G--~~~~l~~~~~~l~~~~~~~~~~ya~~t 78 (114)
..++.||.+.+.|.|.+.|.-|++++|- |++.++++|.+=...-|.. + -... +.++.
T Consensus 93 ~~~~kPvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~~~~g~~~~------------------l~~~v 152 (261)
T PRK11423 93 QKFPKPVIAMVEGSVWGGAFELIMSCDL--IIAASTSTFAMTPANLGVPYNLSGILN------------------FTNDA 152 (261)
T ss_pred HhCCCCEEEEEecEEechHHHHHHhCCE--EEecCCCEecCchhhcCCCCCccHHHH------------------HHHHh
Confidence 4568899999999999999999999998 9999999887655544431 1 1111 11111
Q ss_pred CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
| ...-.+++-....++++||+++||||+|+++
T Consensus 153 g--~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~ 184 (261)
T PRK11423 153 G--FHIVKEMFFTASPITAQRALAVGILNHVVEV 184 (261)
T ss_pred H--HHHHHHHHHcCCCcCHHHHHHcCCcCcccCH
Confidence 2 2333344445567999999999999999864
No 65
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=98.15 E-value=8.3e-06 Score=61.19 Aligned_cols=88 Identities=15% Similarity=0.185 Sum_probs=63.2
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCC-ccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPL-GGA---QGQASDIEIQAREILYLRQRLNEILSEKT 78 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~-~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t 78 (114)
.++.||.+.+-|.|.+.|.-+++++|- |++.++++|.+=... -|. .|... .+.+..
T Consensus 100 ~~~kPvIaav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~~G~~p~~g~~~------------------~l~~~v 159 (262)
T PRK06144 100 QLRVPTIAAIAGACVGGGAAIAAACDL--RIATPSARFGFPIARTLGNCLSMSNLA------------------RLVALL 159 (262)
T ss_pred hCCCCEEEEECCeeeehHHHHHHhCCE--EEecCCCEeechhHHhccCCCCccHHH------------------HHHHHh
Confidence 468899999999999999999999998 999999988664331 221 12111 122222
Q ss_pred CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
| .....+++-....++++||+++||||+|+++
T Consensus 160 G--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 191 (262)
T PRK06144 160 G--AARVKDMLFTARLLEAEEALAAGLVNEVVED 191 (262)
T ss_pred C--HHHHHHHHHcCCCcCHHHHHHcCCcCeecCH
Confidence 2 2333445556678999999999999999864
No 66
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=98.15 E-value=4.8e-06 Score=62.08 Aligned_cols=89 Identities=18% Similarity=0.034 Sum_probs=63.7
Q ss_pred cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKT 78 (114)
Q Consensus 2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~t 78 (114)
..++.||.+.+-|.|.+.|.-|.+++|. |++.++++|.+-...-|.. |...-+. +..
T Consensus 94 ~~~~kPvIAav~G~a~GgG~~la~acD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~l~------------------~~~ 153 (251)
T PRK06023 94 AEAEKPIVSGVDGLAIGIGTTIHLHCDL--TFASPRSLFRTPFVDLALVPEAGSSLLAP------------------RLM 153 (251)
T ss_pred HhCCCCEEEEeCCceecHHHHHHHhCCE--EEEeCCCEecCcccccCCCCCchHHHHHH------------------HHH
Confidence 4568999999999999999999999998 9999999998765554431 2111111 111
Q ss_pred CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
......+++-....++++||+++||||+|++.
T Consensus 154 --g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 185 (251)
T PRK06023 154 --GHQRAFALLALGEGFSAEAAQEAGLIWKIVDE 185 (251)
T ss_pred --hHHHHHHHHHhCCCCCHHHHHHcCCcceeeCH
Confidence 12222333334567999999999999999864
No 67
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=98.15 E-value=5.3e-06 Score=62.00 Aligned_cols=89 Identities=17% Similarity=0.111 Sum_probs=63.3
Q ss_pred cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT 78 (114)
Q Consensus 2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t 78 (114)
..++.||.+.+-|.|.+.|.-+++++|. |++.++++|.+=...-|. .|...- +.+..
T Consensus 91 ~~~~kpvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~------------------l~~~v 150 (257)
T PRK05862 91 ARIRKPVIAAVAGYALGGGCELAMMCDI--IIAADTAKFGQPEIKLGVLPGMGGSQR------------------LTRAV 150 (257)
T ss_pred HhCCCCEEEEEccEEeHHHHHHHHHCCE--EEEeCCCEEeCchhccCcCCCccHHHH------------------HHHHh
Confidence 4568899999999999999999999998 999999988765444332 121111 11122
Q ss_pred CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
| ...-.+++-....++++||+++||||+|++.
T Consensus 151 G--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 182 (257)
T PRK05862 151 G--KAKAMDLCLTGRMMDAAEAERAGLVSRVVPA 182 (257)
T ss_pred C--HHHHHHHHHhCCccCHHHHHHcCCCCEeeCH
Confidence 2 1222334445568999999999999999864
No 68
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=98.15 E-value=9.4e-06 Score=60.72 Aligned_cols=88 Identities=15% Similarity=0.077 Sum_probs=62.1
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKTG 79 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~tg 79 (114)
.++.||.+.+.|.|.+.|.-|+++||. |++.++++|.+-.+.-|.. +-..-+ .+..|
T Consensus 92 ~~~kPvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G~~~~~~~~~~l------------------~~~vG 151 (256)
T TIGR03210 92 DVPKPVIARVQGYAIGGGNVLVTICDL--TIASEKAQFGQVGPKVGSVDPGYGTALL------------------ARVVG 151 (256)
T ss_pred hCCCCEEEEECCEEehhhHHHHHhCCE--EEEeCCCEEecccccccccCCccHHHHH------------------HHHhC
Confidence 468899999999999999999999998 9999999988755544321 111111 11112
Q ss_pred CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
...-.+++-....|+++||+++||||+|+..
T Consensus 152 --~~~A~~lll~g~~~~a~eA~~~Glv~~vv~~ 182 (256)
T TIGR03210 152 --EKKAREIWYLCRRYTAQEALAMGLVNAVVPH 182 (256)
T ss_pred --HHHHHHHHHhCCCcCHHHHHHcCCceeeeCH
Confidence 1122233333467999999999999999864
No 69
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=98.15 E-value=7.3e-06 Score=61.44 Aligned_cols=89 Identities=15% Similarity=0.096 Sum_probs=64.8
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTG 79 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg 79 (114)
.++.||.+.+.|.|.+.|.-|++++|- |++.++++|..-...-|. .|...-+ .+..
T Consensus 98 ~~~kpvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~r~v- 156 (263)
T PRK07799 98 RLTKPLIAAVEGPAIAGGTEILQGTDI--RVAGESAKFGISEAKWSLFPMGGSAVRL------------------VRQI- 156 (263)
T ss_pred cCCCCEEEEECCeEeccHHHHHHhCCE--EEecCCCEecCcccccCcCCCccHHHHH------------------HHHh-
Confidence 468899999999999999999999998 999999998775555442 1221111 1111
Q ss_pred CCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228 80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113 (114)
Q Consensus 80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~ 113 (114)
......+++-....++++||+++||||+|++..
T Consensus 157 -G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 189 (263)
T PRK07799 157 -PYTVACDLLLTGRHITAAEAKEIGLIGHVVPDG 189 (263)
T ss_pred -CHHHHHHHHHcCCCCCHHHHHHcCCccEecCcc
Confidence 223334455556679999999999999998753
No 70
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=98.15 E-value=6.1e-06 Score=61.71 Aligned_cols=87 Identities=15% Similarity=0.140 Sum_probs=64.2
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKTG 79 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~tg 79 (114)
.++.||.+.+-|.|.+.|.-|++++|- |++.++++|.+.....|.. |-..-+ .+..
T Consensus 100 ~~~kpvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~~~~- 158 (262)
T PRK07509 100 RLPVPVIAALEGVCFGGGLQIALGADI--RIAAPDTKLSIMEAKWGLVPDMAGTVSL------------------RGLV- 158 (262)
T ss_pred hCCCCEEEEECCeeecchHHHHHhCCE--EEecCCCEeecchhccCCCCCchHHHHH------------------HHHh-
Confidence 468899999999999999999999998 9999999988876654432 211111 1111
Q ss_pred CCHHHHHhhhcCCceecHHHHHHcCcceeecc
Q psy5228 80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILK 111 (114)
Q Consensus 80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~ 111 (114)
......+++-....++++||+++||||+|++
T Consensus 159 -g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~ 189 (262)
T PRK07509 159 -RKDVARELTYTARVFSAEEALELGLVTHVSD 189 (262)
T ss_pred -CHHHHHHHHHcCCCcCHHHHHHcCChhhhhc
Confidence 2233344454567799999999999999975
No 71
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=98.14 E-value=7.3e-06 Score=62.00 Aligned_cols=89 Identities=10% Similarity=0.113 Sum_probs=63.8
Q ss_pred cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKT 78 (114)
Q Consensus 2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~t 78 (114)
..++.||.+.+.|.|.+.|.-|++++|. |++.++++|.+=....|.. |-..-+ .+..
T Consensus 101 ~~~~kPvIAav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~~~i 160 (275)
T PRK09120 101 RWYQKPTIAMVNGWCFGGGFSPLVACDL--AIAADEAQFGLSEINWGIPPGGGVSKAM------------------ADTV 160 (275)
T ss_pred HhCCCCEEEEEcCEEechhHHHHHhCCE--EEEeCCcEecCCccccCCCCCcchHHHH------------------HHHc
Confidence 3468899999999999999999999998 9999999988744433321 221111 1112
Q ss_pred CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
| ...-.+++-....++++||+++||||+|++.
T Consensus 161 G--~~~a~~llltg~~~~A~eA~~~Glv~~vv~~ 192 (275)
T PRK09120 161 G--HRDALYYIMTGETFTGRKAAEMGLVNESVPL 192 (275)
T ss_pred C--HHHHHHHHhcCCccCHHHHHHcCCcceecCH
Confidence 2 2233444445567999999999999999864
No 72
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=98.14 E-value=7.7e-06 Score=61.00 Aligned_cols=89 Identities=15% Similarity=0.133 Sum_probs=63.9
Q ss_pred cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT 78 (114)
Q Consensus 2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t 78 (114)
..++.||.+.+.|.|.+.|.-+++++|- |++.++++|-+-...-|. .|....+ .+..
T Consensus 91 ~~~~kpvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~~~v 150 (257)
T PRK07658 91 EKFSKPVIAAIHGAALGGGLELAMSCHI--RFATESAKLGLPELNLGLIPGFAGTQRL------------------PRYV 150 (257)
T ss_pred HhCCCCEEEEEcCeeeeHHHHHHHhCCE--EEecCCCcccCcccccCCCCCCcHHHHH------------------HHHh
Confidence 3568899999999999999999999998 999999988765544332 1221111 1111
Q ss_pred CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
| ...-.+++-....++++||+++||||+|++.
T Consensus 151 G--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 182 (257)
T PRK07658 151 G--KAKALEMMLTSEPITGAEALKWGLVNGVFPE 182 (257)
T ss_pred C--HHHHHHHHHcCCCcCHHHHHHcCCcCeecCh
Confidence 2 2223344546677999999999999999864
No 73
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.14 E-value=7.2e-06 Score=61.12 Aligned_cols=91 Identities=14% Similarity=-0.041 Sum_probs=65.0
Q ss_pred cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ-GQASDIEIQAREILYLRQRLNEILSEKTGH 80 (114)
Q Consensus 2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~-G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~ 80 (114)
..++.||.+.+.|.|.+.|..+++++|- |++.++++|......-|.. +-.. ...+.++.
T Consensus 91 ~~~~kPvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g~----------------~~~l~~~~-- 150 (249)
T PRK07110 91 LNCPIPVIAAMQGHAIGGGLVLGLYADI--VVLSRESVYTANFMKYGFTPGMGA----------------TAILPEKL-- 150 (249)
T ss_pred HcCCCCEEEEecCceechHHHHHHhCCE--EEEeCCCEecCchhccCCCCCchH----------------HHHHHHHh--
Confidence 3568899999999999999999999998 9999999886644443321 1100 00111122
Q ss_pred CHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
......+++-...-++++||+++||||+|++.
T Consensus 151 g~~~a~~llltg~~~~a~eA~~~Glv~~vv~~ 182 (249)
T PRK07110 151 GLALGQEMLLTARYYRGAELKKRGVPFPVLPR 182 (249)
T ss_pred CHHHHHHHHHcCCccCHHHHHHcCCCeEEeCh
Confidence 23344556666778999999999999999864
No 74
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=98.13 E-value=1.1e-05 Score=60.26 Aligned_cols=87 Identities=14% Similarity=0.096 Sum_probs=63.2
Q ss_pred cCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228 4 IKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTGH 80 (114)
Q Consensus 4 ~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~ 80 (114)
++.||.+.+.|.|.+.|.-++++||. |++.++++|..-....|. .|-..-+ .+..|
T Consensus 92 ~~kPvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~~~iG- 150 (254)
T PRK08259 92 LSKPVIAAVSGYAVAGGLELALWCDL--RVAEEDAVFGVFCRRWGVPLIDGGTVRL------------------PRLIG- 150 (254)
T ss_pred CCCCEEEEECCEEEhHHHHHHHhCCE--EEecCCCEecCcccccCCCCCccHHHHH------------------HHHhC-
Confidence 57899999999999999999999998 999999988664443332 1211111 11222
Q ss_pred CHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
...-.+++-....|+++||+++||||+|++.
T Consensus 151 -~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~ 181 (254)
T PRK08259 151 -HSRAMDLILTGRPVDADEALAIGLANRVVPK 181 (254)
T ss_pred -HHHHHHHHHcCCccCHHHHHHcCCCCEeeCh
Confidence 3334555556678999999999999999875
No 75
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=98.13 E-value=4.9e-06 Score=62.83 Aligned_cols=89 Identities=11% Similarity=0.098 Sum_probs=64.1
Q ss_pred cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKT 78 (114)
Q Consensus 2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~t 78 (114)
..++.||.+.+-|.|.+.|..|++++|- |++.++++|.+-...-|.. |...-+ .+..
T Consensus 108 ~~~~kPvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~~~v 167 (275)
T PLN02664 108 EQCRKPVIAAIHGACIGGGVDIVTACDI--RYCSEDAFFSVKEVDLAITADLGTLQRL------------------PSIV 167 (275)
T ss_pred HhCCCCEEEEECCccccchHHHHHhCCE--EEecCCCEeccHHHhhCCCCCccHHHHH------------------HHHh
Confidence 3568899999999999999999999998 9999999988755544422 221111 1111
Q ss_pred CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
| ...-.+++-....++++||+++||||+|+++
T Consensus 168 G--~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~ 199 (275)
T PLN02664 168 G--YGNAMELALTGRRFSGSEAKELGLVSRVFGS 199 (275)
T ss_pred C--HHHHHHHHHhCCCCCHHHHHHcCCCceeeCC
Confidence 1 2223444445568999999999999999863
No 76
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=98.13 E-value=7.1e-06 Score=61.77 Aligned_cols=89 Identities=12% Similarity=0.147 Sum_probs=63.6
Q ss_pred cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT 78 (114)
Q Consensus 2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t 78 (114)
..++.||.+.+-|.|.+.|.-|++++|- |++.++++|..-...-|. .|...-+. +..
T Consensus 106 ~~~~kpvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~------------------~~~ 165 (272)
T PRK06142 106 ADCRKPVIAAVQGWCIGGGVDLISACDM--RYASADAKFSVREVDLGMVADVGSLQRLP------------------RII 165 (272)
T ss_pred HhCCCCEEEEecCccccchHHHHHhCCE--EEecCCCeecchhhhhCCCCCchHHHHHH------------------HHh
Confidence 3468899999999999999999999998 999999988766655442 22211111 111
Q ss_pred CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
| .....+++-...-++++||+++||||+|+++
T Consensus 166 G--~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~ 197 (272)
T PRK06142 166 G--DGHLRELALTGRDIDAAEAEKIGLVNRVYDD 197 (272)
T ss_pred C--HHHHHHHHHhCCCcCHHHHHHcCCccEecCC
Confidence 1 1223344444556999999999999999864
No 77
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=98.12 E-value=1e-05 Score=60.59 Aligned_cols=88 Identities=14% Similarity=0.060 Sum_probs=63.5
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTG 79 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg 79 (114)
.++.||.+.+-|.|.+.|.-+++++|- |++.++++|.+=...-|. .|...-+ .+..|
T Consensus 96 ~~~kPvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~~~vG 155 (261)
T PRK08138 96 QCPKPVIAAVNGYALGGGCELAMHADI--IVAGESASFGQPEIKVGLMPGAGGTQRL------------------VRAVG 155 (261)
T ss_pred hCCCCEEEEEccEEEcHHHHHHHhCCE--EEecCCCEeeCcccccccCCCCcHHHHH------------------HHHhC
Confidence 468899999999999999999999998 999999988775554442 1221111 12222
Q ss_pred CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
...-.+++-....++++||+++||||+|++.
T Consensus 156 --~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 186 (261)
T PRK08138 156 --KFKAMRMALTGCMVPAPEALAIGLVSEVVED 186 (261)
T ss_pred --HHHHHHHHHcCCCCCHHHHHHCCCCcEecCc
Confidence 2223344445567999999999999999864
No 78
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=98.12 E-value=8.5e-06 Score=62.19 Aligned_cols=89 Identities=13% Similarity=0.042 Sum_probs=64.7
Q ss_pred cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKT 78 (114)
Q Consensus 2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~t 78 (114)
..++.||.+.+.|.|.+.|.-|++++|- |++.++++|.+-....|.. |-..-+. +..
T Consensus 110 ~~~pkPvIAav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~l~------------------r~v 169 (296)
T PRK08260 110 FDSLKPVIAAVNGPAVGVGATMTLAMDI--RLASTAARFGFVFGRRGIVPEAASSWFLP------------------RLV 169 (296)
T ss_pred HhCCCCEEEEECCeeehHhHHHHHhCCE--EEeeCCCEEecchhhcCcCCCcchhhhHH------------------Hhh
Confidence 3468899999999999999999999998 9999999998876654421 2111111 111
Q ss_pred CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
| ...-.+++-....++++||+++||||+|++.
T Consensus 170 G--~~~A~~llltg~~~~a~eA~~~GLv~~vv~~ 201 (296)
T PRK08260 170 G--LQTALEWVYSGRVFDAQEALDGGLVRSVHPP 201 (296)
T ss_pred C--HHHHHHHHHcCCccCHHHHHHCCCceeecCH
Confidence 1 2233445545567999999999999999864
No 79
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=98.12 E-value=5.5e-06 Score=61.82 Aligned_cols=89 Identities=12% Similarity=0.137 Sum_probs=63.8
Q ss_pred cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT 78 (114)
Q Consensus 2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t 78 (114)
..++.||.+.+.|.|.+.|.-+++++|- |++.++++|..=...-|. .|...-+ .+.-
T Consensus 95 ~~~~kPvIaav~G~a~GgG~~lala~D~--ria~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~~~v 154 (255)
T PRK07260 95 KQLPKPVIMCVDGAVAGAAANMAVAADF--CIASTKTKFIQAFVGVGLAPDAGGLFLL------------------TRAI 154 (255)
T ss_pred HcCCCCEEEEecCeeehhhHHHHHhCCE--EEEeCCCEEechHhhcCCCCCCchhhhh------------------HHhh
Confidence 3568899999999999999999999998 999999988753322222 1221111 1111
Q ss_pred CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
| .....+++-....+|++||+++||||+|++.
T Consensus 155 g--~~~a~~l~l~g~~~sa~eA~~~Glv~~vv~~ 186 (255)
T PRK07260 155 G--LNRATHLAMTGEALTAEKALEYGFVYRVAES 186 (255)
T ss_pred C--HHHHHHHHHhCCccCHHHHHHcCCcceecCH
Confidence 2 2334455556678999999999999999864
No 80
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=98.11 E-value=1.1e-05 Score=60.67 Aligned_cols=90 Identities=10% Similarity=0.053 Sum_probs=61.8
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSV 82 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~ 82 (114)
.++.||.+.+-|.|.+.|.-+++++|- |++.++++|.+=...-|... ..- .. .+.+..| .
T Consensus 99 ~~~kPvIaaV~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gi~p---~~~--~~-----------~l~~~vG--~ 158 (265)
T PRK05674 99 RLKIPTLAVVQGAAFGGALGLISCCDM--AIGADDAQFCLSEVRIGLAP---AVI--SP-----------FVVKAIG--E 158 (265)
T ss_pred cCCCCEEEEEcCEEEechhhHhhhcCE--EEEeCCCEEeCcccccCCCc---chh--HH-----------HHHHHhC--H
Confidence 468899999999999999999999998 99999998887443333221 110 00 0111112 1
Q ss_pred HHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 83 KKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 83 ~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
..-.+++-...-|+++||+++||||+|++.
T Consensus 159 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 188 (265)
T PRK05674 159 RAARRYALTAERFDGRRARELGLLAESYPA 188 (265)
T ss_pred HHHHHHHHhCcccCHHHHHHCCCcceecCH
Confidence 222333334456899999999999999864
No 81
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=98.10 E-value=1.3e-05 Score=59.57 Aligned_cols=89 Identities=16% Similarity=0.030 Sum_probs=61.8
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA-QGQASDIEIQAREILYLRQRLNEILSEKTGHS 81 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~-~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s 81 (114)
.++.||.+.+.|.|.+.|.-+++++|- |++.++++|.+=...-|. -+.. ....+.+..|
T Consensus 84 ~~~kP~Iaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G~~p~~g----------------~~~~l~~~~G-- 143 (243)
T PRK07854 84 AAPVPVIAAINGPAIGAGLQLAMACDL--RVVAPEAYFQFPVAKYGIALDNW----------------TIRRLSSLVG-- 143 (243)
T ss_pred hCCCCEEEEecCcccccHHHHHHhCCE--EEEcCCCEEeccccccccCCCcc----------------HHHHHHHHhC--
Confidence 468899999999999999999999998 999999988753333332 1110 0111122222
Q ss_pred HHHHHhhhcCCceecHHHHHHcCcceeecc
Q psy5228 82 VKKISQDTDRDNFMSAKMAMEYCLIDKILK 111 (114)
Q Consensus 82 ~~~i~~~m~~~~~lta~eA~~~GliD~Ii~ 111 (114)
.....+++-....++++||+++||||+|.+
T Consensus 144 ~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~ 173 (243)
T PRK07854 144 GGRARAMLLGAEKLTAEQALATGMANRIGT 173 (243)
T ss_pred HHHHHHHHHcCCCcCHHHHHHCCCcccccC
Confidence 223334444567899999999999999853
No 82
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=98.10 E-value=1.7e-05 Score=59.23 Aligned_cols=88 Identities=13% Similarity=0.087 Sum_probs=63.9
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKTG 79 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~tg 79 (114)
.++.||.+.+-|.|.+.|.-+++++|- |++.++++|..-...-|.. |-..- +.++.|
T Consensus 89 ~~~kPvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~------------------l~~~vg 148 (254)
T PRK08252 89 PPRKPLIAAVEGYALAGGFELALACDL--IVAARDAKFGLPEVKRGLVAAGGGLLR------------------LPRRIP 148 (254)
T ss_pred cCCCCEEEEECCEEehHHHHHHHhCCE--EEEeCCCEEeCchhhcCCCCCchHHHH------------------HHHHcC
Confidence 367899999999999999999999998 9999999887644443321 21111 122222
Q ss_pred CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
...-.+++-...-++++||+++||||+|+.+
T Consensus 149 --~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 179 (254)
T PRK08252 149 --YHIAMELALTGDMLTAERAHELGLVNRLTEP 179 (254)
T ss_pred --HHHHHHHHHcCCccCHHHHHHcCCcceecCc
Confidence 2334455555667999999999999999875
No 83
>PLN02921 naphthoate synthase
Probab=98.10 E-value=1.4e-05 Score=62.19 Aligned_cols=88 Identities=18% Similarity=0.138 Sum_probs=65.2
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKTG 79 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~tg 79 (114)
.++.||.+.+-|.|.+.|..|++++|- |++.+++.|.+..+..|.. |-..-+ .+..|
T Consensus 159 ~~~kPvIAaVnG~a~GGG~~LalacD~--riA~~~A~f~~pe~~~Gl~p~~gg~~~L------------------~rliG 218 (327)
T PLN02921 159 RLPKPVIAMVAGYAVGGGHILHMVCDL--TIAADNAVFGQTGPKVGSFDAGYGSSIM------------------ARLVG 218 (327)
T ss_pred hCCCCEEEEECCEEecHHHHHHHhCCE--EEEeCCCEEeCcccccCCCCCccHHHHH------------------HHHhC
Confidence 468899999999999999999999998 9999999998877765532 111111 11111
Q ss_pred CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
...-.+++-....|+++||+++||||+|+..
T Consensus 219 --~~~A~ellltG~~~~A~eA~~~GLV~~vv~~ 249 (327)
T PLN02921 219 --QKKAREMWFLARFYTASEALKMGLVNTVVPL 249 (327)
T ss_pred --HHHHHHHHHcCCcCCHHHHHHCCCceEEeCH
Confidence 2233445555668999999999999999864
No 84
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=98.09 E-value=9e-06 Score=61.97 Aligned_cols=89 Identities=9% Similarity=-0.018 Sum_probs=63.2
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSV 82 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~ 82 (114)
.++.||.+.+.|.|.+.|.-|++++|. |++.++++|.+=...-|..|.. .+. + . ... ..
T Consensus 116 ~~pkPvIAaVnG~a~GgG~~lalacD~--ria~e~a~f~~pe~~lGl~~~~-~~~-----l---~--------~~i--G~ 174 (288)
T PRK08290 116 DLPKPTIAQVQGACIAGGLMLAWVCDL--IVASDDAFFSDPVVRMGIPGVE-YFA-----H---P--------WEL--GP 174 (288)
T ss_pred hCCCCEEEEECCEeeHHHHHHHHhCCE--EEeeCCCEecCcccccCcCcch-HHH-----H---H--------HHh--hH
Confidence 468899999999999999999999998 9999999987544444443311 000 0 0 011 12
Q ss_pred HHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 83 KKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 83 ~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
....+++-....++++||+++||||+|++.
T Consensus 175 ~~A~~llltG~~i~A~eA~~~GLV~~vv~~ 204 (288)
T PRK08290 175 RKAKELLFTGDRLTADEAHRLGMVNRVVPR 204 (288)
T ss_pred HHHHHHHHcCCCCCHHHHHHCCCccEeeCH
Confidence 233444445568999999999999999864
No 85
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=98.08 E-value=9.8e-06 Score=60.65 Aligned_cols=89 Identities=16% Similarity=0.126 Sum_probs=63.8
Q ss_pred cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT 78 (114)
Q Consensus 2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t 78 (114)
..++.||.+.+-|.|.+.|.-|.+++|- |++.++++|.+-...-|. .|...-+... .
T Consensus 94 ~~~~kPvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~------------------v 153 (260)
T PRK07657 94 EQLPQPVIAAINGIALGGGLELALACDF--RIAAESASLGLTETTLAIIPGAGGTQRLPRL------------------I 153 (260)
T ss_pred HhCCCCEEEEEcCEeechHHHHHHhCCE--EEeeCCCEEcCchhccCcCCCccHHHHHHHH------------------h
Confidence 3568899999999999999999999998 999999988876665443 2222222111 1
Q ss_pred CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
| ...-.+++-....++++||+++||||+|+++
T Consensus 154 G--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 185 (260)
T PRK07657 154 G--VGRAKELIYTGRRISAQEAKEIGLVEFVVPA 185 (260)
T ss_pred C--HHHHHHHHHhCCCCCHHHHHHcCCCCeecCH
Confidence 1 1122333334456999999999999999864
No 86
>PRK08788 enoyl-CoA hydratase; Validated
Probab=98.08 E-value=1.9e-05 Score=60.39 Aligned_cols=89 Identities=15% Similarity=0.073 Sum_probs=62.9
Q ss_pred cCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q psy5228 4 IKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ-GQASDIEIQAREILYLRQRLNEILSEKTGHSV 82 (114)
Q Consensus 4 ~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~-G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~ 82 (114)
.+.||.+.+.|.|.+.|.-|++++|. |++.++++|.+-...-|.. +-- ....+.+..| .
T Consensus 120 ~pkPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pev~lGl~p~~g----------------~~~~l~~~vG--~ 179 (287)
T PRK08788 120 AGAISIALVQGDALGGGFEAALSHHT--IIAERGAKMGFPEILFNLFPGMG----------------AYSFLARRVG--P 179 (287)
T ss_pred CCCCEEEEECCeeehHHHHHHHhCCE--EEecCCCEeeCchhhhCcCCCch----------------HHHHHHHHhh--H
Confidence 57899999999999999999999998 9999999877544433321 110 0111222222 2
Q ss_pred HHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 83 KKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 83 ~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
....+++-....|+++||+++||||+|++.
T Consensus 180 ~~A~ellltG~~l~A~eA~~~GLV~~vv~~ 209 (287)
T PRK08788 180 KLAEELILSGKLYTAEELHDMGLVDVLVED 209 (287)
T ss_pred HHHHHHHHcCCCCCHHHHHHCCCCcEecCc
Confidence 333445556667999999999999999865
No 87
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=98.07 E-value=1.1e-05 Score=60.31 Aligned_cols=88 Identities=17% Similarity=0.134 Sum_probs=62.2
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTG 79 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg 79 (114)
.++.||.+.+.|.|.+.|..|++++|- |++.+++.|.+-...-|. .|-..-+. +..|
T Consensus 91 ~~~kPvIaav~G~a~GgG~~lala~D~--ria~~~a~f~~pe~~lG~~p~~g~~~~l~------------------~~vG 150 (256)
T TIGR02280 91 ALPLPVVCAVNGVAAGAGANLALACDI--VLAAESARFIQAFAKIGLIPDSGGTWSLP------------------RLVG 150 (256)
T ss_pred hCCCCEEEEECCeeehHHHHHHHhCCE--EEecCCCEEeChhhhcCCCCCccHHHHHH------------------HHhC
Confidence 468899999999999999999999998 999999998764444332 12211111 1111
Q ss_pred CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
...-.+++-...-++++||+++||||+|++.
T Consensus 151 --~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 181 (256)
T TIGR02280 151 --RARAMGLAMLGEKLDARTAASWGLIWQVVDD 181 (256)
T ss_pred --HHHHHHHHHcCCCCCHHHHHHcCCcceeeCh
Confidence 1122334445567999999999999999864
No 88
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=98.06 E-value=1e-05 Score=61.15 Aligned_cols=88 Identities=15% Similarity=0.067 Sum_probs=62.4
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ----GQASDIEIQAREILYLRQRLNEILSEKT 78 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~----G~~~~l~~~~~~l~~~~~~~~~~ya~~t 78 (114)
.++.||.+.+-|.|.+.|.-|++++|- |++.++++|.+-....|.. |...- +.+..
T Consensus 107 ~~~kPvIaav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl~p~~~g~~~~------------------l~~~v 166 (276)
T PRK05864 107 RLHQPVIAAVNGPAIGGGLCLALAADI--RVASSSAYFRAAGINNGLTASELGLSYL------------------LPRAI 166 (276)
T ss_pred hCCCCEEEEECCEeehhHHHHHHhCCE--EEeeCCCEecCcccccCCCCCCcchhee------------------hHhhh
Confidence 468899999999999999999999998 9999999887654443321 21111 11222
Q ss_pred CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
| .....+++-....++++||+++||||+|++.
T Consensus 167 G--~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~ 198 (276)
T PRK05864 167 G--SSRAFEIMLTGRDVDAEEAERIGLVSRQVPD 198 (276)
T ss_pred C--HHHHHHHHHcCCccCHHHHHHcCCcceeeCH
Confidence 2 2233344334446899999999999999864
No 89
>PLN02600 enoyl-CoA hydratase
Probab=98.05 E-value=1.1e-05 Score=60.24 Aligned_cols=88 Identities=11% Similarity=0.007 Sum_probs=62.5
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKTG 79 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~tg 79 (114)
.++.||.+.+-|.|.+.|.-|.+++|- |++.++++|..-....|.. |...-+ .+..
T Consensus 86 ~~~kPvIAav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~~~~- 144 (251)
T PLN02600 86 ALSIPTIAVVEGAALGGGLELALSCDL--RICGEEAVFGLPETGLAIIPGAGGTQRL------------------PRLV- 144 (251)
T ss_pred hCCCCEEEEecCeecchhHHHHHhCCE--EEeeCCCEEeCcccccCcCCCchHHHHH------------------HHHh-
Confidence 468899999999999999999999998 9999999988744433321 221111 1111
Q ss_pred CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
....-.+++-....++++||+++||||+|++.
T Consensus 145 -G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 176 (251)
T PLN02600 145 -GRSRAKELIFTGRRIGAREAASMGLVNYCVPA 176 (251)
T ss_pred -CHHHHHHHHHhCCccCHHHHHHcCCCcEeeCh
Confidence 12222344444567999999999999999864
No 90
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=98.05 E-value=1.3e-05 Score=59.99 Aligned_cols=89 Identities=16% Similarity=0.169 Sum_probs=63.3
Q ss_pred cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKT 78 (114)
Q Consensus 2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~t 78 (114)
..++.||.+.+.|.|.+.|.-|++++|- |++.++++|..-...-|.. |....+ .+..
T Consensus 94 ~~~~kPvIaav~G~a~GgG~~lal~cD~--~va~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~~~v 153 (260)
T PRK05809 94 ENLDKPVIAAINGFALGGGCELSMACDI--RIASEKAKFGQPEVGLGITPGFGGTQRL------------------ARIV 153 (260)
T ss_pred HcCCCCEEEEEcCeeecHHHHHHHhCCE--EEeeCCCEEeCcccccCCCCCccHHHHH------------------HHHh
Confidence 3568899999999999999999999998 9999999988755544432 111111 1111
Q ss_pred CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
| ...-.+++-....++++||+++||||+|++.
T Consensus 154 G--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 185 (260)
T PRK05809 154 G--PGKAKELIYTGDMINAEEALRIGLVNKVVEP 185 (260)
T ss_pred C--HHHHHHHHHhCCCCCHHHHHHcCCCCcccCh
Confidence 1 1223334444567899999999999999864
No 91
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=98.05 E-value=1.5e-05 Score=61.03 Aligned_cols=87 Identities=13% Similarity=-0.021 Sum_probs=65.8
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCc-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLG-GAQGQASDIEIQAREILYLRQRLNEILSEKTGHS 81 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~-~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s 81 (114)
.++.||.+.+.|.|.+.|.-|+++||- |++.++++|.+-.... +...- .. +..+ ..
T Consensus 110 ~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~A~f~~pe~~l~G~~~~--~~-----------------~~~~--vG 166 (298)
T PRK12478 110 RASKPVIAQVHGWCVGGASDYALCADI--VIASDDAVIGTPYSRMWGAYLT--GM-----------------WLYR--LS 166 (298)
T ss_pred hCCCCEEEEEccEEehhHHHHHHHCCE--EEEcCCcEEeccccccccCCch--hH-----------------HHHH--hh
Confidence 468899999999999999999999998 9999999988866552 33210 00 0011 23
Q ss_pred HHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 82 VKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 82 ~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
.....+++-....++++||+++||||+|+..
T Consensus 167 ~~~A~~llltg~~i~A~eA~~~GLV~~vv~~ 197 (298)
T PRK12478 167 LAKVKWHSLTGRPLTGVQAAEAELINEAVPF 197 (298)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCcceecCH
Confidence 4445566667788999999999999999864
No 92
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=98.05 E-value=1.3e-05 Score=60.28 Aligned_cols=88 Identities=14% Similarity=0.021 Sum_probs=61.5
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKTG 79 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~tg 79 (114)
.++.||.+.+-|.|.+.|.-|++++|- |++.++++|.+=....|.. |-..-+.. ..|
T Consensus 104 ~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~------------------~vG 163 (268)
T PRK07327 104 NCDKPIVSAIHGPAVGAGLVAALLADI--SIAAKDARIIDGHTRLGVAAGDHAAIVWPL------------------LCG 163 (268)
T ss_pred cCCCCEEEEEcCeeeehhhHHHHhCCE--EEecCCCEEeCcccccCCCCCcchhhHHHH------------------HhC
Confidence 467899999999999999999999998 9999999887643333322 22111111 011
Q ss_pred CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
...-.+++-....|+++||+++||||+|++.
T Consensus 164 --~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 194 (268)
T PRK07327 164 --MAKAKYYLLLCEPVSGEEAERIGLVSLAVDD 194 (268)
T ss_pred --HHHHHHHHHcCCccCHHHHHHcCCcceecCH
Confidence 1122234445567999999999999999864
No 93
>KOG1680|consensus
Probab=98.04 E-value=9e-06 Score=61.84 Aligned_cols=89 Identities=15% Similarity=0.066 Sum_probs=69.1
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTG 79 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg 79 (114)
.++.||...+-|+|...|.-|.+.||- |+|.|+|.|..-++..|. .|-.+.|.. --
T Consensus 125 ~~~KPvIaainG~AlgGG~ELalmCDi--rva~~~Akfg~~~~~~Gi~p~~GGT~rl~r------------------~v- 183 (290)
T KOG1680|consen 125 RLKKPVIAAINGFALGGGLELALMCDI--RVAGEGAKFGFFEIRMGIIPSWGGTQRLPR------------------IV- 183 (290)
T ss_pred hcccceeEeeeceeeccchhhhhhcce--EeccCCCeecccccccCCccCCCchhhHHH------------------Hh-
Confidence 368899999999999999999999999 999999999999988552 333333222 11
Q ss_pred CCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228 80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113 (114)
Q Consensus 80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~ 113 (114)
....-.+++-....++++||++.|||++|+...
T Consensus 184 -G~s~Ale~~ltg~~~~AqeA~~~GlVn~Vvp~~ 216 (290)
T KOG1680|consen 184 -GKSRALEMILTGRRLGAQEAKKIGLVNKVVPSG 216 (290)
T ss_pred -ChHHHHHHHHhcCcccHHHHHhCCceeEeecch
Confidence 223334556678889999999999999998753
No 94
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=98.03 E-value=1.3e-05 Score=59.79 Aligned_cols=89 Identities=18% Similarity=0.153 Sum_probs=65.9
Q ss_pred cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC-C--CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA-Q--GQASDIEIQAREILYLRQRLNEILSEKT 78 (114)
Q Consensus 2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~-~--G~~~~l~~~~~~l~~~~~~~~~~ya~~t 78 (114)
..++.||.+.+.|.|.+.|.-|++++|. |++.++++|.+....-|. - |...-+.. . .
T Consensus 95 ~~~~kPvIAav~G~a~GgG~eLal~~D~--ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r-------~-----------~ 154 (257)
T COG1024 95 ADLPKPVIAAVNGYALGGGLELALACDI--RIAAEDAKFGLPEVNLGLLPGDGGTQRLPR-------L-----------L 154 (257)
T ss_pred HhCCCCEEEEEcceEeechhhhhhcCCe--EEecCCcEecCcccccccCCCCcHHHHHHH-------h-----------c
Confidence 4678999999999999999999999999 999999999998887553 2 33222211 1 1
Q ss_pred CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
| ...-.+++-...-++++||+++||||+|+..
T Consensus 155 G--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 186 (257)
T COG1024 155 G--RGRAKELLLTGEPISAAEALELGLVDEVVPD 186 (257)
T ss_pred C--HHHHHHHHHcCCcCCHHHHHHcCCcCeeeCC
Confidence 1 1111114445677999999999999998864
No 95
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=98.01 E-value=2.1e-05 Score=58.57 Aligned_cols=85 Identities=15% Similarity=0.068 Sum_probs=59.1
Q ss_pred cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKT 78 (114)
Q Consensus 2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~t 78 (114)
..++.||.+.+.|.|.+.|.-+++++|- |++.++++|.+..+.-|.. |-..-+ .+..
T Consensus 86 ~~~~kPvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~~~~~~Gl~p~~g~~~~l------------------~~~~ 145 (248)
T PRK06072 86 RFSDKIYISAINGVTAGACIGIALSTDF--KFASRDVKFVTAFQRLGLASDTGVAYFL------------------LKLT 145 (248)
T ss_pred HhCCCCEEEEECCeeehHHHHHHHhCCE--EEEcCCCEEecchhhcCcCCCchHHHHH------------------HHHh
Confidence 3568899999999999999999999998 9999999998765554432 111111 1111
Q ss_pred CCCHHHHHhhhcCCceecHHHHHHcCcceee
Q psy5228 79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKI 109 (114)
Q Consensus 79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~I 109 (114)
| . ...+++-....++++||+++||||++
T Consensus 146 g--~-~a~~lll~g~~~~a~eA~~~Glv~~~ 173 (248)
T PRK06072 146 G--Q-RFYEILVLGGEFTAEEAERWGLLKIS 173 (248)
T ss_pred h--H-HHHHHHHhCCccCHHHHHHCCCcccc
Confidence 2 1 12223323455899999999999964
No 96
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=98.01 E-value=1.8e-05 Score=59.17 Aligned_cols=88 Identities=17% Similarity=0.103 Sum_probs=62.4
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTG 79 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg 79 (114)
.++.||.+.+-|.|.+.|.-|++++|- |++.++++|.+-...-|. .|-..-+ .+.-|
T Consensus 97 ~~~kPvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G~~p~~g~~~~l------------------~~~vG 156 (262)
T PRK08140 97 ALPLPVIAAVNGVAAGAGANLALACDI--VLAARSASFIQAFVKIGLVPDSGGTWFL------------------PRLVG 156 (262)
T ss_pred hCCCCEEEEECCeeehhHHHHHHhCCE--EEecCCCEEeccccccCCCCCccHHHHH------------------HHHhC
Confidence 468899999999999999999999998 999999998764443332 1211111 11111
Q ss_pred CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
.....+++-...-++++||+++||||+|++.
T Consensus 157 --~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 187 (262)
T PRK08140 157 --MARALGLALLGEKLSAEQAEQWGLIWRVVDD 187 (262)
T ss_pred --HHHHHHHHHcCCCcCHHHHHHcCCccEeeCh
Confidence 1222344445567999999999999999864
No 97
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=97.99 E-value=9.9e-06 Score=60.66 Aligned_cols=86 Identities=16% Similarity=0.105 Sum_probs=64.0
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKTG 79 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~tg 79 (114)
.++.||.+.+.|.|.+.|.-|++++|. |++.++++|-+....-|.. |...-+ .++
T Consensus 96 ~~~~pvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~L------------------~~~-- 153 (260)
T PRK07659 96 TMPKLTISAIHGPAAGLGLSIALTADY--VIADISAKLAMNFIGIGLIPDGGGHFFL------------------QKR-- 153 (260)
T ss_pred hCCCCEEEEecCceecHHHHHHHhCCE--EEEcCCCEEcCchhhcCCCCCCchhhhH------------------HHh--
Confidence 468899999999999999999999998 9999999987766554432 221111 111
Q ss_pred CCHHHHHhhhcCCceecHHHHHHcCcceeec
Q psy5228 80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKIL 110 (114)
Q Consensus 80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii 110 (114)
.......+++-....++++||+++||||+|+
T Consensus 154 vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv 184 (260)
T PRK07659 154 VGENKAKQIIWEGKKLSATEALDLGLIDEVI 184 (260)
T ss_pred cCHHHHHHHHHhCCccCHHHHHHcCChHHHh
Confidence 1233344555566789999999999999997
No 98
>PRK08321 naphthoate synthase; Validated
Probab=97.99 E-value=3.6e-05 Score=59.04 Aligned_cols=89 Identities=18% Similarity=0.144 Sum_probs=62.7
Q ss_pred cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEec-CCceeeeecCCccCC-C--CHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5228 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSL-PNSRIMIHQPLGGAQ-G--QASDIEIQAREILYLRQRLNEILSEK 77 (114)
Q Consensus 2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~-p~s~~miH~p~~~~~-G--~~~~l~~~~~~l~~~~~~~~~~ya~~ 77 (114)
..++.||.+.+.|.|.+.|.-|++++|- |++. ++++|.+=.+..|.. + -..- +.+.
T Consensus 132 ~~~pkP~IAaV~G~a~GgG~~lalacD~--ria~~~~a~f~~pe~~~Gl~p~~~~~~~------------------L~r~ 191 (302)
T PRK08321 132 RFMPKVVIAVVPGWAAGGGHSLHVVCDL--TLASREHARFKQTDADVGSFDGGYGSAY------------------LARQ 191 (302)
T ss_pred HcCCCCEEEEEcCeeehHHHHHHHhCCE--EEEecCCCEEECCccccccCCCchHHHH------------------HHHH
Confidence 3468899999999999999999999998 9999 689887644443321 1 1111 1122
Q ss_pred hCCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 78 TGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 78 tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
.| ...-.+++-....++++||+++||||+|++.
T Consensus 192 vG--~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~ 224 (302)
T PRK08321 192 VG--QKFAREIFFLGRTYSAEEAHDMGAVNAVVPH 224 (302)
T ss_pred hC--HHHHHHHHHcCCccCHHHHHHCCCceEeeCH
Confidence 22 2223344445568999999999999999864
No 99
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=97.97 E-value=7.9e-06 Score=60.83 Aligned_cols=87 Identities=13% Similarity=-0.026 Sum_probs=62.4
Q ss_pred cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT 78 (114)
Q Consensus 2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t 78 (114)
..++.||.+.+-|.|.+.|.-+++++|- |++.++++|.+....-|. .|-..-+ .+..
T Consensus 92 ~~~~kPvIaav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~G~~p~~g~~~~l------------------~~~~ 151 (249)
T PRK05870 92 ASCPLPTIAAVNGAAVGAGLNLALAADV--RIAGPKALFDARFQKLGLHPGGGATWML------------------QRAV 151 (249)
T ss_pred HhCCCCEEEEECCEeEchhHHHHHhCCE--EEEcCCCEEeCcccccCcCCCCcceeeH------------------Hhhh
Confidence 3568899999999999999999999998 999999999866554442 1221111 1111
Q ss_pred CCCHHHHHhhhcCCceecHHHHHHcCcceeec
Q psy5228 79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKIL 110 (114)
Q Consensus 79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii 110 (114)
......+++-....++++||+++||||+|+
T Consensus 152 --G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv 181 (249)
T PRK05870 152 --GPQVARAALLFGMRFDAEAAVRHGLALMVA 181 (249)
T ss_pred --CHHHHHHHHHhCCccCHHHHHHcCCHHHHH
Confidence 122333444455679999999999999987
No 100
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=97.97 E-value=3.9e-05 Score=56.96 Aligned_cols=91 Identities=16% Similarity=0.114 Sum_probs=61.8
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecC-CceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLP-NSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHS 81 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p-~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s 81 (114)
.++.||.+.+.|.|.+.|..|++++|. |++.+ .++|.+-....|.... .. ....+..+.|.+
T Consensus 92 ~~~kPvIAaV~G~a~GgG~~lalacD~--ria~~~~a~f~~pe~~~Gl~~p--~~-------------~~~~l~~~vG~~ 154 (239)
T PLN02267 92 SLPMPTIAAVTGHASAAGFILALSHDY--VLMRKDRGVLYMSEVDIGLPLP--DY-------------FMALLRAKIGSP 154 (239)
T ss_pred cCCCCEEEEECCcchHHHHHHHHHCCE--EEecCCCCeEeccccccCCCCC--hH-------------HHHHHHHHcChH
Confidence 468899999999999999999999998 99985 4567655544443211 10 011122233321
Q ss_pred HHHH-HhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 82 VKKI-SQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 82 ~~~i-~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
.. .+++-....|+++||+++||||+|+++
T Consensus 155 --~a~~~llltG~~~~a~eA~~~Glv~~vv~~ 184 (239)
T PLN02267 155 --AARRDVLLRAAKLTAEEAVEMGIVDSAHDS 184 (239)
T ss_pred --HHHHHHHHcCCcCCHHHHHHCCCcceecCC
Confidence 22 244556677999999999999999863
No 101
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=97.94 E-value=1.6e-05 Score=59.50 Aligned_cols=86 Identities=12% Similarity=-0.019 Sum_probs=58.9
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTG 79 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg 79 (114)
.++.||.+.+.|.|.+.|.-|+++||. |++.++++|..=...-|. .|-..-+.. +-.
T Consensus 99 ~~~kPvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~----l~~-------------- 158 (260)
T PRK07827 99 ELPKPVIAAIDGHVRAGGFGLVGACDI--VVAGPESTFALTEARIGVAPAIISLTLLPR----LSP-------------- 158 (260)
T ss_pred hCCCCEEEEEcCeeecchhhHHHhCCE--EEEcCCCEEeCcccccCCCCCcccchhHHh----hhH--------------
Confidence 468899999999999999999999998 999999988764443332 121111110 100
Q ss_pred CCHHHHHhhhcCCceecHHHHHHcCcceeecc
Q psy5228 80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILK 111 (114)
Q Consensus 80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~ 111 (114)
....+++-....++++||+++||||+|.+
T Consensus 159 ---~~a~~l~l~g~~~~a~eA~~~Glv~~v~~ 187 (260)
T PRK07827 159 ---RAAARYYLTGEKFGAAEAARIGLVTAAAD 187 (260)
T ss_pred ---HHHHHHHHhCCccCHHHHHHcCCcccchH
Confidence 01122222345689999999999999864
No 102
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=97.91 E-value=0.00012 Score=60.88 Aligned_cols=105 Identities=12% Similarity=0.027 Sum_probs=79.0
Q ss_pred cCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCc---------------------c--------C-C-C-
Q psy5228 4 IKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLG---------------------G--------A-Q-G- 51 (114)
Q Consensus 4 ~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~---------------------~--------~-~-G- 51 (114)
...||.++..+. +|.+=+|++++++ .++.|.+.+.++-... | + . .
T Consensus 125 sgKpVvA~~~~~-~s~~YylAs~AD~--I~~~p~G~v~~~G~~~~~~~~k~~ldKlGV~~~v~r~G~yKsa~epf~r~~m 201 (584)
T TIGR00705 125 SGKPVYAYGTNY-SQGQYYLASFADE--IILNPMGSVDLHGFYTETLFYKGMLDKLGVRWHXFRVGTYKGAVEPFSRKDM 201 (584)
T ss_pred cCCeEEEEEccc-cchhhhhhhhCCE--EEECCCceEEeeceecccccHHHHHHHcCCeEEEeeccccccccCcccCCCC
Confidence 357999988765 6888888888988 9999999987754221 1 0 0 1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcCCce-------ecHHHHHHcCcceeecc
Q psy5228 52 QASDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNF-------MSAKMAMEYCLIDKILK 111 (114)
Q Consensus 52 ~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~~~-------lta~eA~~~GliD~Ii~ 111 (114)
+..+-+..-..|+.+.+.+.+..++.-+++.+++....+.-.| .++++|++.||||+|..
T Consensus 202 S~e~re~~~~~l~~l~~~f~~~Va~~R~l~~~~~~~~a~~~~~~~~~~~g~~a~~A~~~gLVD~l~~ 268 (584)
T TIGR00705 202 SPEARRNYQRWLGELWQNYLSSVSRNRAIPVQQLAPYAQGLLELLQKLNGDGARYALAEKLVTAVCS 268 (584)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhHHHHHHHhhCCchHHHHHHCCCcccCCC
Confidence 1223333445667888899999999999999999988776555 38999999999999974
No 103
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=97.88 E-value=4.4e-05 Score=58.40 Aligned_cols=88 Identities=8% Similarity=0.039 Sum_probs=62.9
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSV 82 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~ 82 (114)
.++.||.+.+.|.|.+.|+-|+++||- |++.+++.|.+=... ..|-+... .+..+. ..
T Consensus 125 ~~~kPvIAaV~G~a~GgG~~lalacD~--~ias~~a~f~~pe~~--~gg~~~~~----------------~~~~~v--G~ 182 (302)
T PRK08272 125 HAHKPTVAKVHGYCVAGGTDIALHCDQ--VIAADDAKIGYPPTR--VWGVPATG----------------MWAYRL--GP 182 (302)
T ss_pred hCCCCEEEEEccEeehhhHHHHHhCCE--EEEeCCCEecCcchh--cccCChHH----------------HHHHHh--hH
Confidence 467899999999999999999999998 999999977543332 11211110 011122 23
Q ss_pred HHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 83 KKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 83 ~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
..-.+++-....++++||+++||||+|++.
T Consensus 183 ~~A~~llltG~~i~a~eA~~~GLv~~vv~~ 212 (302)
T PRK08272 183 QRAKRLLFTGDCITGAQAAEWGLAVEAVPP 212 (302)
T ss_pred HHHHHHHHcCCccCHHHHHHcCCCceecCH
Confidence 444556666778999999999999999864
No 104
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=97.83 E-value=5.8e-05 Score=59.48 Aligned_cols=89 Identities=12% Similarity=0.026 Sum_probs=63.1
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKTG 79 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg 79 (114)
.++.||.+.+-|.|.+.|.-|.++||. |++.++++|-.-.+.-|. .|-..-+... .|
T Consensus 122 ~~pKPVIAAVnG~AiGGGleLALaCDl--rIAse~A~Fg~PE~rlGl~P~~Ggt~rLprl------------------vG 181 (360)
T TIGR03200 122 GCDKPVICRVNGMRIGGGQEIGMAADF--TIAQDLANFGQAGPKHGSAPIGGATDFLPLM------------------IG 181 (360)
T ss_pred hCCCCEEEEECCEeeeHHHHHHHhCCE--EEEcCCCEEeCchhccCCCCCccHHHHHHHh------------------hC
Confidence 468899999999999999999999998 999999998886665442 2222222111 11
Q ss_pred CCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228 80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113 (114)
Q Consensus 80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~ 113 (114)
...-..++-....++++||+++||||+|++..
T Consensus 182 --~~rA~~llltGe~~sA~EA~~~GLVd~VVp~~ 213 (360)
T TIGR03200 182 --CEQAMVSGTLCEPWSAHKAKRLGIIMDVVPAL 213 (360)
T ss_pred --HHHHHHHHHhCCcCcHHHHHHcCChheecCch
Confidence 11122222234589999999999999998753
No 105
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=97.82 E-value=3.4e-05 Score=61.79 Aligned_cols=77 Identities=17% Similarity=0.259 Sum_probs=58.0
Q ss_pred cCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCcc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228 4 IKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGG---AQGQASDIEIQAREILYLRQRLNEILSEKTGH 80 (114)
Q Consensus 4 ~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~---~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~ 80 (114)
++.|+.++++|-+.|.|++.+.+|+. .+|.|+|.+.+=.|.+. .+.+...
T Consensus 258 l~VPiISVViGeGgSGGAlalg~aD~--VlMle~A~ysVisPEgaAsILwkd~~~------------------------- 310 (431)
T PLN03230 258 LRVPIIATVIGEGGSGGALAIGCGNR--MLMMENAVYYVASPEACAAILWKSAAA------------------------- 310 (431)
T ss_pred CCCCEEEEEeCCCCcHHHHHhhcCCE--EEEecCCEEEecCHHHHHHHHhccccc-------------------------
Confidence 46899999999999999999999987 99999999888888642 1222111
Q ss_pred CHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
.++-. +..-+||+++++.|+||+||..
T Consensus 311 -A~eAA----ealkitA~dL~~~GiID~II~E 337 (431)
T PLN03230 311 -APKAA----EALRITAAELVKLGVVDEIVPE 337 (431)
T ss_pred -hHHHH----HHcCCCHHHHHhCCCCeEeccC
Confidence 00111 1226899999999999999974
No 106
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=97.80 E-value=4.1e-05 Score=63.31 Aligned_cols=90 Identities=14% Similarity=0.117 Sum_probs=60.5
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCC--ceeeeecCC-ccC---CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPN--SRIMIHQPL-GGA---QGQASDIEIQAREILYLRQRLNEILSE 76 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~--s~~miH~p~-~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~ 76 (114)
.++.||.+.+-|.|.+.|..|.+++|. |++.++ ++|.+-... .+. .|.... +..
T Consensus 121 ~~pkPvIAAVnG~a~GGG~~LALacD~--rIas~~~~a~fg~pEv~~~Gl~P~~gg~~r------------------l~~ 180 (550)
T PRK08184 121 HSGLKFIAAVNGTCAGGGYELALACDE--IVLVDDRSSAVSLPEVPLLGVLPGTGGLTR------------------VTD 180 (550)
T ss_pred hCCCCEEEEECCEeehHHHHHHHhCCE--EEEecCCCcEEEccchhccccCCCcchHHH------------------hhh
Confidence 468899999999999999999999998 999987 555443321 221 111111 111
Q ss_pred HhCCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 77 KTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 77 ~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
..........+++-....++++||+++||||+|+++
T Consensus 181 ~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~ 216 (550)
T PRK08184 181 KRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKP 216 (550)
T ss_pred hhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCH
Confidence 112223333344445568999999999999999864
No 107
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=97.75 E-value=6.2e-05 Score=56.85 Aligned_cols=77 Identities=21% Similarity=0.273 Sum_probs=58.7
Q ss_pred cCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCcc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228 4 IKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGG---AQGQASDIEIQAREILYLRQRLNEILSEKTGH 80 (114)
Q Consensus 4 ~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~---~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~ 80 (114)
.+.|+.++++|-|.|.|++.+..++. ++|.|++.+.+=.|.+. .+.+. .
T Consensus 135 ~~VP~IsVI~G~~~gGgA~a~~~~D~--v~m~~~a~~~v~~pe~~a~il~~~~--------------------------~ 186 (256)
T PRK12319 135 LKVPIIAIIIGEGGSGGALALAVADQ--VWMLENTMYAVLSPEGFASILWKDG--------------------------S 186 (256)
T ss_pred CCCCEEEEEeCCcCcHHHHHhhcCCE--EEEecCceEEEcCHHHHHHHHhcCc--------------------------c
Confidence 36899999999999999999998887 99999999999888642 11110 1
Q ss_pred CHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
..++..+.+ -+||.++.+.|+||+||+.
T Consensus 187 ~a~~aa~~~----~~~a~~l~~~g~iD~ii~e 214 (256)
T PRK12319 187 RATEAAELM----KITAGELLEMGVVDKVIPE 214 (256)
T ss_pred cHHHHHHHc----CCCHHHHHHCCCCcEecCC
Confidence 222223333 3499999999999999975
No 108
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=97.74 E-value=0.00012 Score=57.89 Aligned_cols=87 Identities=15% Similarity=0.026 Sum_probs=61.7
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKTG 79 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~tg 79 (114)
.++.||.+.+.|.|.+.|.-|++++|. |++.++++|.+=...-|.. |...-+ -++-.. ...
T Consensus 103 ~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~iGl~p~~g~~~~L-------~rl~g~-~a~------ 166 (379)
T PLN02874 103 TYKKTQVALVHGLVMGGGAGLMVPMKF--RVVTEKTVFATPEASVGFHTDCGFSYIL-------SRLPGH-LGE------ 166 (379)
T ss_pred hCCCCEEEEecCeEEecHHHHHHhCCe--EEEeCCeEEeccccccCcCCChhHHHHH-------HhhhHH-HHH------
Confidence 468999999999999999999999998 9999999887766554432 221111 111000 111
Q ss_pred CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
.++-....++++||+++||||+|++.
T Consensus 167 -------~l~ltG~~i~a~eA~~~GLv~~vv~~ 192 (379)
T PLN02874 167 -------YLALTGARLNGKEMVACGLATHFVPS 192 (379)
T ss_pred -------HHHHcCCcccHHHHHHcCCccEEeCH
Confidence 22223457999999999999999864
No 109
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=97.69 E-value=0.00018 Score=55.96 Aligned_cols=78 Identities=22% Similarity=0.255 Sum_probs=58.6
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCcc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGG---AQGQASDIEIQAREILYLRQRLNEILSEKTG 79 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~---~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg 79 (114)
..+.|+.++++|-+.|.|++.+..++. ++|.|+|.+.+=.|.+. .+.+.
T Consensus 187 ~~~VP~IsVIiGeg~sGGAla~~~aD~--v~m~~~A~~svisPEg~a~Il~~~~-------------------------- 238 (319)
T PRK05724 187 RLKVPIICTVIGEGGSGGALAIGVGDR--VLMLEYSTYSVISPEGCASILWKDA-------------------------- 238 (319)
T ss_pred CCCCCEEEEEeCCccHHHHHHHhccCe--eeeecCceEeecCHHHHHHHHhcCc--------------------------
Confidence 346899999999999999999988887 99999999988888642 11110
Q ss_pred CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
...++..+ ...+||+++++.|+||+|+..
T Consensus 239 ~~a~~aae----~~~ita~~l~~~g~iD~II~E 267 (319)
T PRK05724 239 SKAPEAAE----AMKITAQDLKELGIIDEIIPE 267 (319)
T ss_pred hhHHHHHH----HcCCCHHHHHHCCCceEeccC
Confidence 11222222 334899999999999999974
No 110
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.65 E-value=0.00021 Score=55.55 Aligned_cols=77 Identities=27% Similarity=0.247 Sum_probs=57.6
Q ss_pred cCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCcc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228 4 IKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGG---AQGQASDIEIQAREILYLRQRLNEILSEKTGH 80 (114)
Q Consensus 4 ~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~---~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~ 80 (114)
.+.|+.++++|-+.|.|++.+..++. ++|.|++.+.+=.|.+. .+.+...
T Consensus 188 ~~VP~IsVViGeggsGGAla~~~aD~--v~m~~~a~~sVisPEg~a~Il~kd~~~------------------------- 240 (316)
T TIGR00513 188 LGVPVICTVIGEGGSGGALAIGVGDK--VNMLEYSTYSVISPEGCAAILWKDASK------------------------- 240 (316)
T ss_pred CCCCEEEEEecccccHHHhhhccCCE--EEEecCceEEecCHHHHHHHhccchhh-------------------------
Confidence 46899999999999999998888887 99999999999888643 1222100
Q ss_pred CHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
.++..+. .-+||+++.+.|+||+||..
T Consensus 241 -a~~aae~----~~~ta~~l~~~G~iD~II~e 267 (316)
T TIGR00513 241 -APKAAEA----MKITAPDLKELGLIDSIIPE 267 (316)
T ss_pred -HHHHHHH----ccCCHHHHHHCCCCeEeccC
Confidence 1111221 33589999999999999974
No 111
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=97.65 E-value=5.1e-05 Score=59.22 Aligned_cols=88 Identities=16% Similarity=0.066 Sum_probs=62.0
Q ss_pred cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT 78 (114)
Q Consensus 2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t 78 (114)
..++.||.+.+-|.|.+.|.-|.++||- |++.++++|.+=...-|. .|...-+.. + .
T Consensus 97 ~~~~kPvIAaVnG~a~GgG~~LalacD~--ria~~~a~f~~pe~~lGl~P~~g~~~~L~r----~--------------~ 156 (342)
T PRK05617 97 ARYPKPYIALMDGIVMGGGVGISAHGSH--RIVTERTKMAMPETGIGFFPDVGGTYFLSR----A--------------P 156 (342)
T ss_pred HhCCCCEEEEEcCEEEccHhHHhhhCCE--EEEcCCCEeeCCccccCcCCCccceeEehh----c--------------c
Confidence 3468899999999999999999999998 999999998876655442 222111111 0 0
Q ss_pred CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
| ..-.+++-....++++||+++||||+|++.
T Consensus 157 g---~~a~~llltG~~i~A~eA~~~GLv~~vv~~ 187 (342)
T PRK05617 157 G---ALGTYLALTGARISAADALYAGLADHFVPS 187 (342)
T ss_pred c---HHHHHHHHcCCCCCHHHHHHcCCcceecCH
Confidence 0 011222224456999999999999999864
No 112
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=97.62 E-value=0.00031 Score=54.70 Aligned_cols=78 Identities=15% Similarity=0.106 Sum_probs=58.5
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCcc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGG---AQGQASDIEIQAREILYLRQRLNEILSEKTG 79 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~---~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg 79 (114)
..+.|+.++++|-+.|.|++.+..++. ++|.|+|.+.+=.|.+. .+.+.+.-. --|+
T Consensus 190 ~~~VP~IsVViGeggsGGAlal~~aD~--V~m~e~a~~sVisPEg~a~Il~~d~~~a~---------------~aA~--- 249 (322)
T CHL00198 190 SFEVPIICTIIGEGGSGGALGIGIGDS--IMMLEYAVYTVATPEACAAILWKDSKKSL---------------DAAE--- 249 (322)
T ss_pred cCCCCEEEEEeCcccHHHHHhhhcCCe--EEEeCCeEEEecCHHHHHHHHhcchhhHH---------------HHHH---
Confidence 346899999999999999998888887 99999999999999642 122211111 1122
Q ss_pred CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
-.-+||++-+++|+||+||..
T Consensus 250 ------------~~~ita~dL~~~giiD~ii~E 270 (322)
T CHL00198 250 ------------ALKITSEDLKVLGIIDEIIPE 270 (322)
T ss_pred ------------HcCCCHHHHHhCCCCeEeccC
Confidence 233789999999999999974
No 113
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.60 E-value=0.00016 Score=61.35 Aligned_cols=89 Identities=15% Similarity=0.133 Sum_probs=64.7
Q ss_pred cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKT 78 (114)
Q Consensus 2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~t 78 (114)
..++.||.+.+-|.|.+.|.-|+++||. |++.++++|.+=...-|.. |-...+. +..
T Consensus 99 ~~~~kPvIAav~G~a~GgG~~LAlacD~--ria~~~a~f~~pe~~lGl~p~~g~~~~L~------------------rlv 158 (715)
T PRK11730 99 EDLPVPTVAAINGYALGGGCECVLATDY--RVASPDARIGLPETKLGIMPGFGGTVRLP------------------RLI 158 (715)
T ss_pred HcCCCCEEEEECCEeehHHHHHHHhCCE--EEEcCCCEEeCchhhcCCCCCchHHHHHH------------------Hhc
Confidence 3568899999999999999999999998 9999999888755554421 2221111 111
Q ss_pred CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
| ...-.+++-....++++||+++||||+|++.
T Consensus 159 G--~~~A~~llltG~~~~A~eA~~~GLv~~vv~~ 190 (715)
T PRK11730 159 G--ADNALEWIAAGKDVRAEDALKVGAVDAVVAP 190 (715)
T ss_pred C--HHHHHHHHHcCCcCCHHHHHHCCCCeEecCH
Confidence 2 2233444545667999999999999999864
No 114
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=97.58 E-value=0.00028 Score=56.38 Aligned_cols=87 Identities=13% Similarity=0.069 Sum_probs=62.2
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKTG 79 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~tg 79 (114)
.++.||.+.+.|.|.+.|.-|.++|+. |++.++++|-.=...-|.. |-..-+. ++-.. ...|.--
T Consensus 131 ~~pkPvIA~v~G~a~GGG~~Lal~cD~--rvate~a~fa~PE~~iGl~Pd~G~s~~L~-------rl~G~-~a~~L~L-- 198 (401)
T PLN02157 131 TYLKPHVAILNGVTMGGGTGVSIPGTF--RVATDRTIFATPETIIGFHPDAGASFNLS-------HLPGR-LGEYLGL-- 198 (401)
T ss_pred hCCCCEEEEEeCeEeehhHHHHHhCCE--EEEeCCCEEEChhhhcCCCCCccHHHHHH-------HhhhH-HHHHHHH--
Confidence 468899999999999999999999998 9999999887665554432 3222221 11111 1222223
Q ss_pred CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
....|+++||+++||+|+++..
T Consensus 199 -----------TG~~i~A~eA~~~GLv~~vVp~ 220 (401)
T PLN02157 199 -----------TGLKLSGAEMLACGLATHYIRS 220 (401)
T ss_pred -----------cCCcCCHHHHHHcCCceEEeCH
Confidence 3468999999999999999865
No 115
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=97.54 E-value=0.00034 Score=55.57 Aligned_cols=87 Identities=14% Similarity=0.064 Sum_probs=61.3
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKTG 79 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~tg 79 (114)
.++.||.+.+.|.|.+.|.-|.++|+. |++.++++|-.=...-|.. |...-+ -++-.. ...|.--||
T Consensus 103 ~~pKPvIa~v~G~a~GGG~~Lal~~D~--rvate~a~f~mPE~~iGl~Pd~G~s~~L-------~rl~G~-~~~~l~LTG 172 (381)
T PLN02988 103 TYSKAQVSILNGIVMGGGAGVSVHGRF--RIATENTVFAMPETALGLFPDVGASYFL-------SRLPGF-FGEYVGLTG 172 (381)
T ss_pred HCCCCEEEEecCeEeehhhHHhhcCCe--EEEcCCcEEeChhhhcCcCCCccHHHHH-------HHHHHH-HHHHHHHcC
Confidence 468899999999999999999999998 9999999876544443422 222222 111111 122333333
Q ss_pred CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
..++++||++.||+|+++..
T Consensus 173 -------------~~i~a~eA~~~GLv~~vv~~ 192 (381)
T PLN02988 173 -------------ARLDGAEMLACGLATHFVPS 192 (381)
T ss_pred -------------CCCCHHHHHHcCCceEecCH
Confidence 57999999999999999864
No 116
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=97.52 E-value=0.00026 Score=58.60 Aligned_cols=91 Identities=12% Similarity=0.067 Sum_probs=64.5
Q ss_pred cccCCCeEEEE-ehhhhhHH-HHHHhcCCCCcEEe-------cCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHH
Q psy5228 2 QFIKPNVSTLC-IGLAASMG-AFLLASGTKGKRFS-------LPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQR 69 (114)
Q Consensus 2 ~~~~~~V~t~~-~G~aaS~a-s~i~~ag~~~~R~~-------~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~ 69 (114)
..++.||.+.+ -|.|.+.| .=|+++||. |++ .++++|.+-...-|.. |-..-+
T Consensus 362 ~~~~kpviAav~~G~a~GgG~~eLalacD~--~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~~~L------------- 426 (546)
T TIGR03222 362 DVSSRSLFALIEPGSCFAGTLAELAFAADR--SYMLAFPDNNDPEPAITLSELNFGLYPMVNGLSRL------------- 426 (546)
T ss_pred HcCCCCEEEEECCCeEeHHHHHHHHHhCce--eeecCCCCCCCCCCEEeCCccccccCCCcCcHHHH-------------
Confidence 34688999999 79999999 999999998 999 8999988877765532 332222
Q ss_pred HHHHHHHHh-CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 70 LNEILSEKT-GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 70 ~~~~ya~~t-g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
.++. |.+.-.-.+++-....++++||+++|||++|++.
T Consensus 427 -----~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~ 465 (546)
T TIGR03222 427 -----ATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDD 465 (546)
T ss_pred -----HHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCc
Confidence 1222 2222222222224567999999999999999765
No 117
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.45 E-value=0.00032 Score=59.50 Aligned_cols=89 Identities=16% Similarity=0.141 Sum_probs=63.4
Q ss_pred cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCc--eeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5228 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNS--RIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSE 76 (114)
Q Consensus 2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s--~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~ 76 (114)
..++.||.+.+-|.|.+.|.-|+++||. |++.+++ +|.+....-|. .|-..-+ .+
T Consensus 98 ~~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~a~a~fg~pe~~lGl~p~~gg~~~L------------------~r 157 (708)
T PRK11154 98 EALPIPVVAAIHGACLGGGLELALACHY--RVCTDDPKTVLGLPEVQLGLLPGSGGTQRL------------------PR 157 (708)
T ss_pred HhCCCCEEEEECCeeechHHHHHHhCCE--EEEeCCCCceEeCccccCCCCCCccHHhHH------------------Hh
Confidence 3578899999999999999999999998 9999986 55555544342 1221111 11
Q ss_pred HhCCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 77 KTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 77 ~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
..| ...-.+++-....++++||+++||||+|+..
T Consensus 158 ~vG--~~~A~~llltG~~i~a~eA~~~GLv~~vv~~ 191 (708)
T PRK11154 158 LIG--VSTALDMILTGKQLRAKQALKLGLVDDVVPH 191 (708)
T ss_pred hcC--HHHHHHHHHhCCcCCHHHHHHCCCCcEecCh
Confidence 112 2333455556677999999999999999864
No 118
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=97.45 E-value=0.00046 Score=55.31 Aligned_cols=88 Identities=13% Similarity=0.009 Sum_probs=63.1
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ---GQASDIEIQAREILYLRQRLNEILSEKTG 79 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~---G~~~~l~~~~~~l~~~~~~~~~~ya~~tg 79 (114)
..+.||.+.+.|.|.+.|.-|.++|+. |++.++++|..=...-|.. |-..- |-++-... ..|.--|
T Consensus 136 ~~pKPvIA~v~G~amGGG~gLal~~D~--rVate~a~famPE~~iGl~PdvG~s~~-------L~rl~g~~-g~~L~LT- 204 (407)
T PLN02851 136 TYLKPNVAIMDGITMGCGAGISIPGMF--RVVTDKTVFAHPEVQMGFHPDAGASYY-------LSRLPGYL-GEYLALT- 204 (407)
T ss_pred hCCCCEEEEEcCEEeeHHHHHHHhCCE--EEEeCCceEecchhccCCCCCccHHHH-------HHHhcCHH-HHHHHHh-
Confidence 467899999999999999999999998 9999999888766654432 22111 22221111 2233334
Q ss_pred CCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228 80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113 (114)
Q Consensus 80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~ 113 (114)
...++++||+++||+|+++...
T Consensus 205 ------------G~~i~a~eA~~~GLa~~~v~~~ 226 (407)
T PLN02851 205 ------------GQKLNGVEMIACGLATHYCLNA 226 (407)
T ss_pred ------------CCcCCHHHHHHCCCceeecCHh
Confidence 4679999999999999998653
No 119
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=97.44 E-value=0.00024 Score=58.75 Aligned_cols=90 Identities=16% Similarity=0.131 Sum_probs=57.8
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCC--ceeeeecCC-ccC---CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPN--SRIMIHQPL-GGA---QGQASDIEIQAREILYLRQRLNEILSE 76 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~--s~~miH~p~-~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~ 76 (114)
.++.||.+.+-|.|.+.|.-|.++||- |++.++ ++|.+=... .|. .|-...+ ..
T Consensus 117 ~~pkPvIAAVnG~a~GGG~~LALacD~--rvAs~~a~a~f~~pEv~~lGl~P~~gg~~~l------------------~~ 176 (546)
T TIGR03222 117 HSGLKFLAAVNGTCAGGGYELALACDE--IMLVDDRSSSVSLPEVPLLGVLPGTGGLTRV------------------TD 176 (546)
T ss_pred hCCCCEEEEECCEeehHHHHHHHhCCE--EEEecCCCcEEEccchhccCcCCccchhhhc------------------cc
Confidence 468899999999999999999999998 999987 455442221 121 1111110 00
Q ss_pred HhCCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 77 KTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 77 ~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
........-.+++-...-++++||+++||||+|++.
T Consensus 177 ~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~ 212 (546)
T TIGR03222 177 KRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKP 212 (546)
T ss_pred cchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeCh
Confidence 001112222233334456899999999999999864
No 120
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=97.44 E-value=0.00038 Score=59.00 Aligned_cols=89 Identities=17% Similarity=0.149 Sum_probs=61.9
Q ss_pred cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCc--eeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5228 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNS--RIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSE 76 (114)
Q Consensus 2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s--~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~ 76 (114)
..++.||.+.+-|.|.+.|.-|+++||. |++.+++ +|.+-...-|. .|-..-+. +
T Consensus 93 ~~~~kPvIAaVnG~a~GgG~~LaLacD~--ria~~~~~a~fg~pev~lGl~p~~g~~~~L~------------------r 152 (699)
T TIGR02440 93 EALPIPVVAAIHGACLGGGLELALACHS--RVCSDDDKTVLGLPEVQLGLLPGSGGTQRLP------------------R 152 (699)
T ss_pred HhCCCCEEEEECCEeecHHHHHHHhCCE--EEEcCCCCcEEechhhcccCCCCccHHHHHH------------------H
Confidence 3568899999999999999999999998 9999874 55554444342 12211111 1
Q ss_pred HhCCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 77 KTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 77 ~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
..| ...-.+++-....++++||+++||||+|+++
T Consensus 153 ~vG--~~~A~~llltG~~~~a~eA~~~GLV~~vv~~ 186 (699)
T TIGR02440 153 LIG--VSTALDMILTGKQLRAKQALKLGLVDDVVPQ 186 (699)
T ss_pred hcC--HHHHHHHHHcCCcCCHHHHHhCCCCcEecCh
Confidence 111 2222344556677999999999999999864
No 121
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=97.38 E-value=0.00046 Score=58.70 Aligned_cols=89 Identities=12% Similarity=0.078 Sum_probs=63.7
Q ss_pred cccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228 2 QFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEKT 78 (114)
Q Consensus 2 ~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~t 78 (114)
..++.||.+.+.|.|.+.|.-|+++|+. |++.++++|.+=...-|. .|-...+. +..
T Consensus 99 ~~~pkPvIAai~G~alGGGleLalacD~--ria~~~a~fglPEv~lGl~Pg~Ggt~rL~------------------rli 158 (714)
T TIGR02437 99 EDLPVPTVAAINGIALGGGCECVLATDF--RIADDTAKIGLPETKLGIMPGFGGTVRLP------------------RVI 158 (714)
T ss_pred HhCCCCEEEEECCeeecHHHHHHHhCCE--EEEeCCCEEecchhhcCCCCCccHHHHHH------------------HHh
Confidence 3568899999999999999999999998 999999998876555442 12222211 111
Q ss_pred CCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
| ...-.+++-....++++||+++||||+|+..
T Consensus 159 G--~~~A~~llltG~~~~A~eA~~~GLvd~vv~~ 190 (714)
T TIGR02437 159 G--ADNALEWIASGKENRAEDALKVGAVDAVVTA 190 (714)
T ss_pred C--HHHHHHHHHcCCcCCHHHHHHCCCCcEeeCh
Confidence 1 1122344445567999999999999999864
No 122
>PRK10949 protease 4; Provisional
Probab=97.35 E-value=0.0024 Score=53.66 Aligned_cols=104 Identities=13% Similarity=0.065 Sum_probs=72.6
Q ss_pred CCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCcc-----------------------------C--CCCH
Q psy5228 5 KPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGG-----------------------------A--QGQA 53 (114)
Q Consensus 5 ~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~-----------------------------~--~G~~ 53 (114)
..||.++.. .++|.+=+|++++++ .++.|.+.+.++-.... + ..-.
T Consensus 145 GKpVvA~~~-~~~s~~YyLASaAD~--I~l~P~G~v~~~G~~~~~~~~k~lLdKlGV~~~v~r~G~yKsA~epf~r~~mS 221 (618)
T PRK10949 145 GKPVYAVGD-SYSQGQYYLASFANK--IYLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMS 221 (618)
T ss_pred CCeEEEEec-CccchhhhhhhhCCE--EEECCCceEEEeeeecchhhHHHHHHHcCCeEEEEEecCCCCCCCcccCCCCC
Confidence 468888743 345777777778887 99999999887754321 0 0111
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHhCCCHHHHHhhh----cC---CceecHHHHHHcCcceeecc
Q psy5228 54 SDIEI-QAREILYLRQRLNEILSEKTGHSVKKISQDT----DR---DNFMSAKMAMEYCLIDKILK 111 (114)
Q Consensus 54 ~~l~~-~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m----~~---~~~lta~eA~~~GliD~Ii~ 111 (114)
.+-++ .-..|+.+.+.+.+..++.-+++.+++.... +. ..-++|++|++.||||+|..
T Consensus 222 ~e~Re~~~~ll~~l~~~f~~~VA~~R~l~~~~v~~~a~~~~~~l~~~~~~~a~~Al~~GLVD~l~~ 287 (618)
T PRK10949 222 PAAREADSRWIGELWQNYLNTVAANRQITPQQLFPGAQGILEGLTKVGGDTAKYALDNKLVDALAS 287 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCccHHHHHHCCCCCcCCC
Confidence 22233 3345677888899999999999999996433 22 12369999999999999975
No 123
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=97.28 E-value=0.00067 Score=57.92 Aligned_cols=88 Identities=14% Similarity=0.118 Sum_probs=61.4
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCc--eeeeecCCccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNS--RIMIHQPLGGA---QGQASDIEIQAREILYLRQRLNEILSEK 77 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s--~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~~~~ya~~ 77 (114)
.++.||...+-|.|.+.|.-|+++||. |++.+++ +|.+....-|. .|-...+. +.
T Consensus 106 ~~~kPvIAav~G~a~GgG~eLALacD~--ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLp------------------rl 165 (737)
T TIGR02441 106 KSQKPIVAAISGSCLGGGLELALACHY--RIATKDRKTLLGLPEVMLGLLPGAGGTQRLP------------------KL 165 (737)
T ss_pred hCCCCEEEEECCEeecHHHHHHHhCCE--EEEcCCCCCeEecchhhhCCCCCccHhhhHH------------------Hh
Confidence 468899999999999999999999998 9999985 45554443332 12221111 11
Q ss_pred hCCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 78 TGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 78 tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
.| ...-.+++-....++++||+++||||+|++.
T Consensus 166 iG--~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~ 198 (737)
T TIGR02441 166 TG--VPAALDMMLTGKKIRADRAKKMGIVDQLVDP 198 (737)
T ss_pred hC--HHHHHHHHHcCCcCCHHHHHHCCCCeEecCC
Confidence 12 1222334446678999999999999999874
No 124
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=97.18 E-value=0.00077 Score=55.90 Aligned_cols=91 Identities=15% Similarity=0.087 Sum_probs=61.5
Q ss_pred ccCCCeEEEEe-hhhhhHH-HHHHhcCCCCcEEec-------CCceeeeecCCccC---CCCHHHHHHHHHHHHHHHHHH
Q psy5228 3 FIKPNVSTLCI-GLAASMG-AFLLASGTKGKRFSL-------PNSRIMIHQPLGGA---QGQASDIEIQAREILYLRQRL 70 (114)
Q Consensus 3 ~~~~~V~t~~~-G~aaS~a-s~i~~ag~~~~R~~~-------p~s~~miH~p~~~~---~G~~~~l~~~~~~l~~~~~~~ 70 (114)
.++.||.+.+- |.|.+.| .-|+++||. |++. |+++|.+-...-|. .|-..-+....
T Consensus 367 ~~~kPvIAaV~~G~a~GgG~~eLalacD~--~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~~~L~r~~---------- 434 (550)
T PRK08184 367 VTSRSLFALIEPGSCFAGTLAELALAADR--SYMLALPDDNDPAPAITLSALNFGLYPMVNGLSRLARRF---------- 434 (550)
T ss_pred hCCCCEEEEECCCceehhHHHHHHHHCCh--hhhcCCCCCCCCCCEEECccccccCCCCCCcHHHhHHHh----------
Confidence 45789999996 9999999 999999998 9999 99998887776553 22322221110
Q ss_pred HHHHHHHhCCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 71 NEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 71 ~~~ya~~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
-|.+.-.-..++-....++++||+++||||+|++.
T Consensus 435 -------vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~ 469 (550)
T PRK08184 435 -------YGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDD 469 (550)
T ss_pred -------cChHHHHHHHHHHhCCcCCHHHHHHcCCcccccCh
Confidence 01110000000113467999999999999999864
No 125
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=97.06 E-value=0.0022 Score=54.65 Aligned_cols=77 Identities=21% Similarity=0.245 Sum_probs=56.9
Q ss_pred cCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCcc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228 4 IKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGG---AQGQASDIEIQAREILYLRQRLNEILSEKTGH 80 (114)
Q Consensus 4 ~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~---~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~ 80 (114)
.+.|+.++++|-|+|.|++.+..++. ++|.|+|.+.+-.|.+. .+.+.+. ..--|+.
T Consensus 279 l~VP~ISVViGeggSGGAlA~g~aD~--VlMle~A~~sVisPEgaAsILwkd~~~---------------A~eAAe~--- 338 (762)
T PLN03229 279 LKVPIVSIVIGEGGSGGALAIGCANK--LLMLENAVFYVASPEACAAILWKSAKA---------------APKAAEK--- 338 (762)
T ss_pred CCCCEEEEEeCCcchHHHHHhhcCCE--EEEecCCeEEecCHHHHHHHHhcCccc---------------HHHHHHH---
Confidence 46899999999999999999999988 99999999888777542 1221111 0111222
Q ss_pred CHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
.-+||++=+++|+||+||..
T Consensus 339 ------------lkiTa~dL~~lGiiD~IIpE 358 (762)
T PLN03229 339 ------------LRITAQELCRLQIADGIIPE 358 (762)
T ss_pred ------------cCCCHHHHHhCCCCeeeccC
Confidence 23788999999999999964
No 126
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=96.98 E-value=0.0057 Score=45.82 Aligned_cols=82 Identities=13% Similarity=0.038 Sum_probs=56.4
Q ss_pred cCCCeEEEEehhhhhHHHHHHhc-CCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q psy5228 4 IKPNVSTLCIGLAASMGAFLLAS-GTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSV 82 (114)
Q Consensus 4 ~~~~V~t~~~G~aaS~as~i~~a-g~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~ 82 (114)
.+.|+.+++.|.+.|.|.+-+.. ++. .++.|++.+-.=.|.+. ++-+.++.
T Consensus 106 ~~vP~IsvI~g~a~ggg~lamg~~ad~--v~Alp~A~i~vm~~e~a--------------------------a~I~~~~~ 157 (238)
T TIGR03134 106 AGHPVIGLIYGKAISGAFLAHGLQADR--IIALPGAMVHVMDLESM--------------------------ARVTKRSV 157 (238)
T ss_pred CCCCEEEEEeCCccHHHHHHHccCcCe--EEEcCCcEEEecCHHHH--------------------------HHHHccCH
Confidence 35899999999999988887753 554 99999998777666432 11111333
Q ss_pred HHHHhhhc--CCceecHHHHHHcCcceeecccC
Q psy5228 83 KKISQDTD--RDNFMSAKMAMEYCLIDKILKQR 113 (114)
Q Consensus 83 ~~i~~~m~--~~~~lta~eA~~~GliD~Ii~~~ 113 (114)
++..+..+ ..+-.+++.+.+.|+||+|+++.
T Consensus 158 ~~~~e~a~~~~~~a~~~~~~~~~G~vd~vi~~~ 190 (238)
T TIGR03134 158 EELEALAKSSPVFAPGIENFVKLGGVHALLDVA 190 (238)
T ss_pred hHHHHHHHhhhhhccCHHHHHhCCCccEEeCCC
Confidence 33333322 23457888999999999999853
No 127
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=96.64 E-value=0.0014 Score=50.49 Aligned_cols=80 Identities=25% Similarity=0.294 Sum_probs=60.2
Q ss_pred CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCcc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5228 1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGG---AQGQASDIEIQAREILYLRQRLNEILSEK 77 (114)
Q Consensus 1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~---~~G~~~~l~~~~~~l~~~~~~~~~~ya~~ 77 (114)
|-.++.||.+++.|--.|-|++-+..|++ .+|..||.+.+-.|.+- .+-+++.- .--++.
T Consensus 184 m~~LkvPiI~iVIGEGgSGGALAi~vad~--V~mle~s~ySVisPEG~AsILWkD~~ka---------------~eAAe~ 246 (317)
T COG0825 184 MARLKVPIISIVIGEGGSGGALAIGVADR--VLMLENSTYSVISPEGCASILWKDASKA---------------KEAAEA 246 (317)
T ss_pred HhCCCCCEEEEEecCCCchhhHHhhHHHH--HHHHHhceeeecChhhhhhhhhcChhhh---------------HHHHHH
Confidence 34578999999999999999999999998 99999999999999742 23332221 112223
Q ss_pred hCCCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 78 TGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 78 tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
.+ +|+++=+++|+||.||..
T Consensus 247 mk---------------ita~dLk~lgiID~II~E 266 (317)
T COG0825 247 MK---------------ITAHDLKELGIIDGIIPE 266 (317)
T ss_pred cC---------------CCHHHHHhCCCcceeccC
Confidence 33 567777899999999875
No 128
>KOG1681|consensus
Probab=96.55 E-value=0.00062 Score=51.06 Aligned_cols=93 Identities=12% Similarity=0.113 Sum_probs=65.2
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSV 82 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~ 82 (114)
..+.||.+-+-|.|.++|.=|..||+. ||+...+.|.+...-.+...+.- .|+++-+.+- +.
T Consensus 124 ~CpKPVIaavHg~CiGagvDLiTAcDI--RycsqDAffsvkEVDvglaADvG-------TL~RlpkvVG---------n~ 185 (292)
T KOG1681|consen 124 RCPKPVIAAVHGACIGAGVDLITACDI--RYCSQDAFFSVKEVDVGLAADVG-------TLNRLPKVVG---------NQ 185 (292)
T ss_pred hCChhHHHHHHhhhccccccceeecce--eeecccceeeeeeeeeehhhchh-------hHhhhhHHhc---------ch
Confidence 457788888889999999999999999 99999999999998765432221 2333332211 01
Q ss_pred HHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228 83 KKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113 (114)
Q Consensus 83 ~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~ 113 (114)
.-..++--..+-|++.||+++||+-+|...+
T Consensus 186 s~~~elafTar~f~a~EAl~~GLvSrvf~dk 216 (292)
T KOG1681|consen 186 SLARELAFTARKFSADEALDSGLVSRVFPDK 216 (292)
T ss_pred HHHHHHHhhhhhcchhhhhhcCcchhhcCCH
Confidence 1112222234568999999999999998764
No 129
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=96.43 E-value=0.014 Score=43.15 Aligned_cols=92 Identities=13% Similarity=0.031 Sum_probs=63.8
Q ss_pred ehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcC
Q psy5228 13 IGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQG-QASDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDR 91 (114)
Q Consensus 13 ~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G-~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~ 91 (114)
..+|+|+-.++|++|.+ |++.|.+++-+|||.....- ..... ++...+...-.=...|-...|....-+......
T Consensus 140 ~A~CasaCpl~fagGvr--Rvve~~ayiGVHq~~~~g~~~r~~~~--~a~Sanq~~tar~a~ylrEMgigpgLlq~ml~t 215 (245)
T COG3904 140 GAMCASACPLMFAGGVR--RVVEDFAYIGVHQITTTGRRERIVNG--KAKSANQKVTARLAAYLREMGIGPGLLQMMLAT 215 (245)
T ss_pred hhhhhccchhhhhccee--eeecccceeeeeeccccCCccccCcH--hhhhhhhhhHHHHHHHHHHcCCCHHHHHHHhcC
Confidence 36899999999999998 99999999999999865322 11111 111111111111455888899988877776633
Q ss_pred ----CceecHHHHHHcCccee
Q psy5228 92 ----DNFMSAKMAMEYCLIDK 108 (114)
Q Consensus 92 ----~~~lta~eA~~~GliD~ 108 (114)
=.+++.+|-.+|.|+.+
T Consensus 216 pp~dir~l~~kem~~~~L~t~ 236 (245)
T COG3904 216 PPSDIRQLGLKEMTAMKLVTS 236 (245)
T ss_pred ChHhhhhhhHHHHhhhccccc
Confidence 37799999999988764
No 130
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=95.34 E-value=0.031 Score=46.10 Aligned_cols=90 Identities=19% Similarity=0.251 Sum_probs=53.9
Q ss_pred CCCeEEEEehhhhhHHHHHHhc----CCCCcEEecCCceeeeecCCccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228 5 KPNVSTLCIGLAASMGAFLLAS----GTKGKRFSLPNSRIMIHQPLGGA-QGQASDIEIQAREILYLRQRLNEILSEKTG 79 (114)
Q Consensus 5 ~~~V~t~~~G~aaS~as~i~~a----g~~~~R~~~p~s~~miH~p~~~~-~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg 79 (114)
..|..+++.|.+++.|.+.+++ ++. .++.|++.+.+=.|.+.. .-..+++... +.-...+
T Consensus 388 ~vP~isvi~g~~~Gga~~am~~~~~~~d~--~~a~p~a~~~v~~pe~a~~i~~~~~l~~~-~~~~~~~------------ 452 (512)
T TIGR01117 388 TVPKVTIITRKAYGGAYLAMCSKHLGADQ--VYAWPTAEIAVMGPAGAANIIFRKDIKEA-KDPAATR------------ 452 (512)
T ss_pred CCCEEEEEcCCCchHHHHHhccccCCCCE--EEEcCCCeEeecCHHHHHHHHhhhhcccc-cCHHHHH------------
Confidence 5789999999999987666643 443 888999988888886531 0011111100 0000000
Q ss_pred CCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228 80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113 (114)
Q Consensus 80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~ 113 (114)
.+++.+. .+.+.+|..+.+.|+||.||+++
T Consensus 453 --~~~~~~~--~~~~~~~~~~a~~g~vD~VI~P~ 482 (512)
T TIGR01117 453 --KQKIAEY--REEFANPYKAAARGYVDDVIEPK 482 (512)
T ss_pred --HHHHHHH--HHhhcCHHHHHhcCCCCeeEChH
Confidence 0111111 12356899999999999999864
No 131
>KOG1682|consensus
Probab=95.23 E-value=0.01 Score=44.06 Aligned_cols=92 Identities=18% Similarity=0.136 Sum_probs=65.6
Q ss_pred CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy5228 1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGH 80 (114)
Q Consensus 1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~ 80 (114)
++.+|.||..-+-|.|+.+|+-+.+++|- .++.++|.|..--.-.|.+-+..-+ .|.+.--+=+..|.--||+
T Consensus 121 Irn~pVPVia~VNG~AaAAGcQLVaSCD~--vVa~k~SkF~tPG~~vGlFCSTPGv-----AlaRavpRkva~~ML~Tg~ 193 (287)
T KOG1682|consen 121 IRNLPVPVIAKVNGYAAAAGCQLVASCDM--VVATKNSKFSTPGAGVGLFCSTPGV-----ALARAVPRKVAAYMLMTGL 193 (287)
T ss_pred HhcCCCceEEEecchhhhccceEEEeeeE--EEEecCccccCCCCceeeEecCcch-----hHhhhcchhHHHHHHHhCC
Confidence 35678899999999999999999999998 8999999997655444432221111 1223333335556666765
Q ss_pred CHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 81 SVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 81 s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
| .|+|||+--|++.+|++.
T Consensus 194 P-------------i~~eeAl~sGlvskvVp~ 212 (287)
T KOG1682|consen 194 P-------------ITGEEALISGLVSKVVPA 212 (287)
T ss_pred C-------------CchHHHHHhhhhhhcCCH
Confidence 4 689999999999988764
No 132
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=95.16 E-value=0.011 Score=44.20 Aligned_cols=85 Identities=20% Similarity=0.282 Sum_probs=61.9
Q ss_pred CcccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCC--CC-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5228 1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQ--GQ-ASDIEIQAREILYLRQRLNEILSEK 77 (114)
Q Consensus 1 m~~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~--G~-~~~l~~~~~~l~~~~~~~~~~ya~~ 77 (114)
++.+|.||.+.+-|+|.+-|-++-+.|+- -++..|+.|-=--|..+.+ |- +.-|. ++
T Consensus 112 IR~~PKpViA~V~G~AiGGGhvlhvvCDL--TiAa~nA~FgQTgp~VGSFD~G~Gs~yla--------------r~---- 171 (282)
T COG0447 112 IRTMPKPVIAMVAGYAIGGGHVLHVVCDL--TIAADNAIFGQTGPKVGSFDGGYGSSYLA--------------RI---- 171 (282)
T ss_pred HHhCCcceEEEEeeEeccCccEEEEEeee--eeehhcchhcCCCCCcccccCcccHHHHH--------------HH----
Confidence 46789999999999999999999999998 7899999999888986532 21 11111 11
Q ss_pred hCCCHHHHHhhhcCCce-----ecHHHHHHcCcceeeccc
Q psy5228 78 TGHSVKKISQDTDRDNF-----MSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 78 tg~s~~~i~~~m~~~~~-----lta~eA~~~GliD~Ii~~ 112 (114)
-| +.-.|+.| .+++||++.|+|..|+..
T Consensus 172 VG-------qKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~ 204 (282)
T COG0447 172 VG-------QKKAREIWFLCRQYDAEEALDMGLVNTVVPH 204 (282)
T ss_pred hh-------hhhhHHhhhhhhhccHHHHHhcCceeeeccH
Confidence 11 01113333 499999999999998763
No 133
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=94.27 E-value=0.054 Score=45.29 Aligned_cols=102 Identities=14% Similarity=0.085 Sum_probs=53.0
Q ss_pred cCCCeEEEEehhhhhHHHHHHhcC--CCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy5228 4 IKPNVSTLCIGLAASMGAFLLASG--TKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHS 81 (114)
Q Consensus 4 ~~~~V~t~~~G~aaS~as~i~~ag--~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s 81 (114)
.+.|..|+++|.+++.|.+.+++. .....++.|++.+-+=.|.+.. .+ .+..++.+..+.....-.+....-
T Consensus 438 ~~VP~isvi~g~a~G~g~~aM~g~~~~~d~~~awp~A~i~vmg~e~aa-----~i-l~~~e~~~~~~~~~~~~~~~~~~~ 511 (569)
T PLN02820 438 AKVPKITIIVGGSFGAGNYGMCGRAYSPNFLFMWPNARIGVMGGAQAA-----GV-LAQIERENKKRQGIQWSKEEEEAF 511 (569)
T ss_pred CCCCEEEEEECCcchHHHHHhcCcCCCCCEEEECCCCeEEecCHHHHH-----HH-HHHHHhhhhhhccccCCccHHHHH
Confidence 457999999999999988888633 2223666666666555553221 11 011111111110000000000000
Q ss_pred HHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228 82 VKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113 (114)
Q Consensus 82 ~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~ 113 (114)
.+++.+..+ ...+|-.|-+.|+||.||+++
T Consensus 512 ~~~~~~~~~--~~~~p~~aa~~~~vD~VIdP~ 541 (569)
T PLN02820 512 KAKTVEAYE--REANPYYSTARLWDDGVIDPA 541 (569)
T ss_pred HHHHHHHHH--HhCCHHHHHHcCCcCcccCHH
Confidence 112222222 256899999999999999875
No 134
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=93.61 E-value=0.11 Score=42.56 Aligned_cols=94 Identities=16% Similarity=0.117 Sum_probs=52.6
Q ss_pred cCCCeEEEEehhhhhHHHHHHhcCC--CCcEEecCCceeeeecCCccC-CCCHHHHHHHH---HHHHHHHHHHHHHHHHH
Q psy5228 4 IKPNVSTLCIGLAASMGAFLLASGT--KGKRFSLPNSRIMIHQPLGGA-QGQASDIEIQA---REILYLRQRLNEILSEK 77 (114)
Q Consensus 4 ~~~~V~t~~~G~aaS~as~i~~ag~--~~~R~~~p~s~~miH~p~~~~-~G~~~~l~~~~---~~l~~~~~~~~~~ya~~ 77 (114)
.+.|+.|+++|.+.|.|.+.+++.. ....++-|++.+.+-.|.+.. .--..++.... ++.........+.|
T Consensus 366 ~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~vm~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 442 (493)
T PF01039_consen 366 ATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIGVMGPEGAASILYRDELEAAEAEGADPEAQRAEKIAEY--- 442 (493)
T ss_dssp H-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEESS-HHHHHHHHTHHHHHHSCHCCHSHHHHHHHHHHHH---
T ss_pred CCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceeeecChhhhheeeehhhhhhhhcccchhHHHHHHHHHHH---
Confidence 3679999999999998777766551 223788888888888776431 11111111110 01111111111111
Q ss_pred hCCCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228 78 TGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113 (114)
Q Consensus 78 tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~ 113 (114)
.+...++..|.+.|++|.|+++.
T Consensus 443 -------------~~~~~~~~~~a~~~~~D~ii~p~ 465 (493)
T PF01039_consen 443 -------------EDELSSPYRAASRGYVDDIIDPA 465 (493)
T ss_dssp -------------HHHHSSHHHHHHTTSSSEESSGG
T ss_pred -------------HHhcCCHHHHHhcCCCCCccCHH
Confidence 12235789999999999999875
No 135
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=92.30 E-value=0.35 Score=37.17 Aligned_cols=73 Identities=14% Similarity=0.145 Sum_probs=52.0
Q ss_pred CCCeEEEEehhhhhHHHHHHh-cCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Q psy5228 5 KPNVSTLCIGLAASMGAFLLA-SGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSVK 83 (114)
Q Consensus 5 ~~~V~t~~~G~aaS~as~i~~-ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~ 83 (114)
..|..+++.|-+.+.++..+. .++- .++-|++.+.+--|.. +.+-++
T Consensus 193 ~vP~IsVv~gpt~GG~aas~a~~~D~--iia~p~A~ig~aGprV--------------------------ie~ti~---- 240 (285)
T TIGR00515 193 GLPYISVLTDPTTGGVSASFAMLGDL--NIAEPKALIGFAGPRV--------------------------IEQTVR---- 240 (285)
T ss_pred CCCEEEEEeCCcchHHHHHHHhCCCE--EEEECCeEEEcCCHHH--------------------------HHHHhc----
Confidence 468999999999887766664 7777 8999999888766631 111222
Q ss_pred HHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228 84 KISQDTDRDNFMSAKMAMEYCLIDKILKQR 113 (114)
Q Consensus 84 ~i~~~m~~~~~lta~eA~~~GliD~Ii~~~ 113 (114)
+.+. +-+-+|+-+.+.|+||.|++++
T Consensus 241 ---e~lp-e~~q~ae~~~~~G~vD~iv~~~ 266 (285)
T TIGR00515 241 ---EKLP-EGFQTSEFLLEHGAIDMIVHRP 266 (285)
T ss_pred ---Cccc-hhcCCHHHHHhCCCCcEEECcH
Confidence 2222 3366888889999999999864
No 136
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=91.20 E-value=0.6 Score=36.02 Aligned_cols=73 Identities=19% Similarity=0.196 Sum_probs=48.9
Q ss_pred CCCeEEEEehhhhhHHHHHHh-cCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Q psy5228 5 KPNVSTLCIGLAASMGAFLLA-SGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSVK 83 (114)
Q Consensus 5 ~~~V~t~~~G~aaS~as~i~~-ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~ 83 (114)
..|..++++|-+.+.++..+. .++- .++-|++.+.+--|.. + .+-++ +
T Consensus 194 ~vP~IsVv~gpt~GG~aas~a~~~D~--iia~p~A~ig~aGprv--------i------------------e~~~~---e 242 (292)
T PRK05654 194 GLPYISVLTDPTTGGVSASFAMLGDI--IIAEPKALIGFAGPRV--------I------------------EQTVR---E 242 (292)
T ss_pred CCCEEEEEeCCCchHHHHHHHHcCCE--EEEecCcEEEecCHHH--------H------------------Hhhhh---h
Confidence 468899999999887766655 4776 8899999888766621 0 01111 1
Q ss_pred HHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228 84 KISQDTDRDNFMSAKMAMEYCLIDKILKQR 113 (114)
Q Consensus 84 ~i~~~m~~~~~lta~eA~~~GliD~Ii~~~ 113 (114)
++. +-+-+++-+.+.|+||.|++++
T Consensus 243 ~lp-----e~~~~ae~~~~~G~vD~Vv~~~ 267 (292)
T PRK05654 243 KLP-----EGFQRAEFLLEHGAIDMIVHRR 267 (292)
T ss_pred hhh-----hhhcCHHHHHhCCCCcEEECHH
Confidence 111 1255778888999999999864
No 137
>KOG1679|consensus
Probab=89.32 E-value=0.24 Score=37.22 Aligned_cols=88 Identities=15% Similarity=0.120 Sum_probs=62.7
Q ss_pred ccCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCc----cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228 3 FIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLG----GAQGQASDIEIQAREILYLRQRLNEILSEKT 78 (114)
Q Consensus 3 ~~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~----~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~t 78 (114)
.++.||..-++|.|-+-|-=++++||. |.+..++.+-+-.-.. |..|+ +.+-. .+
T Consensus 122 ~Lp~P~IAAidG~ALGGGLElALACDi--Rva~s~akmGLvET~laiiPGaGGt-QRLpR----------~v-------- 180 (291)
T KOG1679|consen 122 RLPQPVIAAIDGAALGGGLELALACDI--RVAASSAKMGLVETKLAIIPGAGGT-QRLPR----------IV-------- 180 (291)
T ss_pred hCCccceehhcchhcccchhhhhhccc--eehhhhccccccccceeeecCCCcc-chhHH----------HH--------
Confidence 467899999999999999999999999 9999999998876542 23443 22211 11
Q ss_pred CCCHHHHHhhhcCCceecHHHHHHcCcceeecccC
Q psy5228 79 GHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113 (114)
Q Consensus 79 g~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~~ 113 (114)
.+..-++++-...-|++.||.+.|+|.++++..
T Consensus 181 --g~alaKELIftarvl~g~eA~~lGlVnhvv~qn 213 (291)
T KOG1679|consen 181 --GVALAKELIFTARVLNGAEAAKLGLVNHVVEQN 213 (291)
T ss_pred --hHHHHHhHhhhheeccchhHHhcchHHHHHhcC
Confidence 111122344455678899999999999888753
No 138
>KOG0016|consensus
Probab=85.06 E-value=1.1 Score=34.09 Aligned_cols=84 Identities=17% Similarity=0.173 Sum_probs=54.7
Q ss_pred CCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCcc----CCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy5228 5 KPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGG----AQG-QASDIEIQAREILYLRQRLNEILSEKTG 79 (114)
Q Consensus 5 ~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~----~~G-~~~~l~~~~~~l~~~~~~~~~~ya~~tg 79 (114)
+.|+.+.+-|-|.+.++.|+--+|- .++... .-+|-|.+. ..| +.-.+-..
T Consensus 107 ~Kplia~vNGPAIGlgasil~lcD~--V~A~Dk--a~F~TPfa~lGq~PEG~Ss~t~p~i-------------------- 162 (266)
T KOG0016|consen 107 PKPLVALVNGPAIGLGASILPLCDY--VWASDK--AWFQTPFAKLGQSPEGCSSVTLPKI-------------------- 162 (266)
T ss_pred CCCEEEEecCCccchhhHHhhhhhe--EEeccc--eEEeccchhcCCCCCcceeeeehHh--------------------
Confidence 6789999999999999999999997 787644 445667642 123 11111110
Q ss_pred CCHHHHHhhhcCCceecHHHHHHcCcceeeccc
Q psy5228 80 HSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQ 112 (114)
Q Consensus 80 ~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~~ 112 (114)
.....-.++|=-..-|+++||.++|||++|...
T Consensus 163 mG~~~A~E~ll~~~kltA~Ea~~~glVskif~~ 195 (266)
T KOG0016|consen 163 MGSASANEMLLFGEKLTAQEACEKGLVSKIFPA 195 (266)
T ss_pred hchhhHHHHHHhCCcccHHHHHhcCchhhhcCh
Confidence 011112223333456899999999999999764
No 139
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=76.55 E-value=1.9 Score=23.76 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=15.4
Q ss_pred cCCceecHHHHHHcCccee
Q psy5228 90 DRDNFMSAKMAMEYCLIDK 108 (114)
Q Consensus 90 ~~~~~lta~eA~~~GliD~ 108 (114)
.....||-+||++.||||.
T Consensus 17 ~tg~~lsv~~A~~~glId~ 35 (45)
T PF00681_consen 17 ETGERLSVEEAIQRGLIDS 35 (45)
T ss_dssp TTTEEEEHHHHHHTTSS-H
T ss_pred CCCeEEcHHHHHHCCCcCH
Confidence 3567799999999999995
No 140
>smart00250 PLEC Plectin repeat.
Probab=71.74 E-value=2.6 Score=22.31 Aligned_cols=19 Identities=26% Similarity=0.226 Sum_probs=15.8
Q ss_pred CCceecHHHHHHcCcceee
Q psy5228 91 RDNFMSAKMAMEYCLIDKI 109 (114)
Q Consensus 91 ~~~~lta~eA~~~GliD~I 109 (114)
...-||-.||++.|+||.-
T Consensus 18 t~~~lsv~eA~~~glid~~ 36 (38)
T smart00250 18 TGQKLSVEEALRRGLIDPE 36 (38)
T ss_pred CCCCcCHHHHHHcCCCCcc
Confidence 4456899999999999964
No 141
>PF14117 DUF4287: Domain of unknown function (DUF4287)
Probab=70.68 E-value=7.4 Score=23.15 Aligned_cols=33 Identities=9% Similarity=0.061 Sum_probs=24.4
Q ss_pred HHHHHHHHHhCCCHHHHHhhhcCC-ceecHHHHH
Q psy5228 69 RLNEILSEKTGHSVKKISQDTDRD-NFMSAKMAM 101 (114)
Q Consensus 69 ~~~~~ya~~tg~s~~~i~~~m~~~-~~lta~eA~ 101 (114)
.+.+-+.++||+|.+++.+.++.. -.....|-+
T Consensus 4 sy~~~Ie~kTGk~~~~W~~~~~~~~~~~k~~e~v 37 (61)
T PF14117_consen 4 SYLPNIEKKTGKTLDEWLALAREGGPLTKHGEIV 37 (61)
T ss_pred HHHhHhHHHHCcCHHHHHHHHHHhCCCCcHHHHH
Confidence 455667889999999999998766 555555544
No 142
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=70.62 E-value=7.1 Score=23.19 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=24.7
Q ss_pred HHHHHHHHHhCC-CHHHHHhhhcCCceecHHHHHHc
Q psy5228 69 RLNEILSEKTGH-SVKKISQDTDRDNFMSAKMAMEY 103 (114)
Q Consensus 69 ~~~~~ya~~tg~-s~~~i~~~m~~~~~lta~eA~~~ 103 (114)
.+++-+.+-+|. |.++|...+ ++..|.|.||++.
T Consensus 7 k~VQ~iKEiv~~hse~eIya~L-~ecnMDpnea~qr 41 (60)
T PF06972_consen 7 KTVQSIKEIVGCHSEEEIYAML-KECNMDPNEAVQR 41 (60)
T ss_pred HHHHHHHHHhcCCCHHHHHHHH-HHhCCCHHHHHHH
Confidence 456667777787 888887765 5677888888764
No 143
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=69.48 E-value=10 Score=20.90 Aligned_cols=32 Identities=25% Similarity=0.152 Sum_probs=26.8
Q ss_pred HHHHHHHhCCCHHHHHhhhcCCceecHHHHHH
Q psy5228 71 NEILSEKTGHSVKKISQDTDRDNFMSAKMAME 102 (114)
Q Consensus 71 ~~~ya~~tg~s~~~i~~~m~~~~~lta~eA~~ 102 (114)
..-+++.+|.|+..|.++.......+.+.+..
T Consensus 12 ~~~la~~~gis~~~i~~~~~g~~~~~~~~~~~ 43 (55)
T PF01381_consen 12 QKELAEKLGISRSTISRIENGKRNPSLDTLKK 43 (55)
T ss_dssp HHHHHHHHTS-HHHHHHHHTTSSTSBHHHHHH
T ss_pred HHHHHHHhCCCcchhHHHhcCCCCCCHHHHHH
Confidence 46689999999999999999998899888764
No 144
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=67.94 E-value=8.3 Score=29.56 Aligned_cols=39 Identities=10% Similarity=-0.064 Sum_probs=34.8
Q ss_pred CCeEEEEehh--hhhHHHHHHhcCCCCcEEecCCceeeeecCC
Q psy5228 6 PNVSTLCIGL--AASMGAFLLASGTKGKRFSLPNSRIMIHQPL 46 (114)
Q Consensus 6 ~~V~t~~~G~--aaS~as~i~~ag~~~~R~~~p~s~~miH~p~ 46 (114)
.|+.+++.|- |++.++++++.++. .+|.|++++.+--|.
T Consensus 137 vP~Isvv~Gp~gc~GG~a~~a~l~D~--vim~~~a~i~~aGP~ 177 (274)
T TIGR03133 137 VPVIGVIGGRVGCFGGMGIAAGLCSY--LIMTEEGRLGLSGPE 177 (274)
T ss_pred CCEEEEEeCCCCcchHHHHHHhcCCE--EEEeCCcEEeccCHH
Confidence 6999999999 78888888889988 999999999988885
No 145
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=67.02 E-value=16 Score=22.28 Aligned_cols=24 Identities=8% Similarity=0.076 Sum_probs=20.4
Q ss_pred HHHHHHHHHhCCCHHHHHhhhcCC
Q psy5228 69 RLNEILSEKTGHSVKKISQDTDRD 92 (114)
Q Consensus 69 ~~~~~ya~~tg~s~~~i~~~m~~~ 92 (114)
.+.+.+++.+|.|..++.++++..
T Consensus 45 ~~~~~lAk~~G~t~~~l~~~~~~G 68 (75)
T TIGR02675 45 GALQALAKAMGVTRGELRKMLSDG 68 (75)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHCC
Confidence 356788999999999999988765
No 146
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=65.94 E-value=8.8 Score=29.83 Aligned_cols=39 Identities=15% Similarity=-0.032 Sum_probs=34.8
Q ss_pred CCeEEEEehh--hhhHHHHHHhcCCCCcEEecCCceeeeecCC
Q psy5228 6 PNVSTLCIGL--AASMGAFLLASGTKGKRFSLPNSRIMIHQPL 46 (114)
Q Consensus 6 ~~V~t~~~G~--aaS~as~i~~ag~~~~R~~~p~s~~miH~p~ 46 (114)
.|+.+++.|- |++.+++++..++. .+|.|++++.+--|.
T Consensus 146 VP~I~vv~G~~gc~GG~a~~a~l~D~--iIm~~~a~iglaGP~ 186 (301)
T PRK07189 146 VPVIGLIGGRVGCFGGMGIAAALCSY--LIVSEEGRLGLSGPE 186 (301)
T ss_pred CCEEEEEcCCCCCcHHHHHHHhcCCE--EEEECCcEEeccCHH
Confidence 6999999998 88888888989988 999999999888875
No 147
>PRK09726 antitoxin HipB; Provisional
Probab=64.34 E-value=23 Score=21.94 Aligned_cols=48 Identities=10% Similarity=0.059 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcCCceecHHH
Q psy5228 52 QASDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKM 99 (114)
Q Consensus 52 ~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~~~lta~e 99 (114)
++..+....+.+...+..-..-+|+++|.+...|.++.......+.+.
T Consensus 9 ~~~~l~~~lk~~R~~~gltq~elA~~~gvs~~tis~~e~g~~~ps~~~ 56 (88)
T PRK09726 9 SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTT 56 (88)
T ss_pred CHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHH
Confidence 345666666666665555578899999999999999988766666554
No 148
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=63.41 E-value=17 Score=19.72 Aligned_cols=33 Identities=9% Similarity=0.113 Sum_probs=25.3
Q ss_pred HHHHHHHHhCCCHHHHHhhhcCCceecHHHHHH
Q psy5228 70 LNEILSEKTGHSVKKISQDTDRDNFMSAKMAME 102 (114)
Q Consensus 70 ~~~~ya~~tg~s~~~i~~~m~~~~~lta~eA~~ 102 (114)
-..-+++.+|.+...+.++.....-.+.++...
T Consensus 17 tq~~lA~~~gvs~~~vs~~e~g~~~~~~~~~~~ 49 (58)
T TIGR03070 17 TQADLADLAGVGLRFIRDVENGKPTVRLDKVLR 49 (58)
T ss_pred CHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHH
Confidence 356789999999999999987766666666543
No 149
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=62.91 E-value=16 Score=29.58 Aligned_cols=52 Identities=23% Similarity=0.270 Sum_probs=33.3
Q ss_pred HHHHHHHHHH---HHHHHHHHhCCCHHHHHhhh---cCCceecHHHHHHcCcceeecc
Q psy5228 60 AREILYLRQR---LNEILSEKTGHSVKKISQDT---DRDNFMSAKMAMEYCLIDKILK 111 (114)
Q Consensus 60 ~~~l~~~~~~---~~~~ya~~tg~s~~~i~~~m---~~~~~lta~eA~~~GliD~Ii~ 111 (114)
.++++..+.. -.+++.++.|++.++|++.. .=..|++++.|+..||+-.+..
T Consensus 300 Ir~~qlAKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~iGLlP~~~~ 357 (412)
T PF14574_consen 300 IREFQLAKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIRIGLLPDVPA 357 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHHTTSS--S-G
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhhcCCCCCccc
Confidence 3444444433 36788899999999999976 4478999999999999977643
No 150
>TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein. This model identifies a cluster of ABC transporter periplasmic substrate binding proteins, apparently specific for taurine. Transport systems for taurine (NH2-CH2-CH2-SO3H), sulfonates, and sulfate esters import sulfur when sulfate levels are low. The most closely related proteins outside this family are putative aliphatic sulfonate binding proteins (TIGR01728).
Probab=62.48 E-value=46 Score=24.76 Aligned_cols=30 Identities=13% Similarity=0.111 Sum_probs=24.9
Q ss_pred HHHHHHHhCCCHHHHHhhhcCCceecHHHH
Q psy5228 71 NEILSEKTGHSVKKISQDTDRDNFMSAKMA 100 (114)
Q Consensus 71 ~~~ya~~tg~s~~~i~~~m~~~~~lta~eA 100 (114)
.+++++.+|.+.+.+...+....|.+.++.
T Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (300)
T TIGR01729 227 VQKMAKLIGGDAEGVPQLLKGLSFPTADEQ 256 (300)
T ss_pred HHHHHHHhCcCHHHHHHHHhcCCCCCHHHh
Confidence 477899999999999999988888777553
No 151
>PF07553 Lipoprotein_Ltp: Host cell surface-exposed lipoprotein; InterPro: IPR011434 This domain is found as 1-3 copies in a small family of proteins of unknown function.
Probab=61.21 E-value=14 Score=20.89 Aligned_cols=30 Identities=7% Similarity=0.005 Sum_probs=25.3
Q ss_pred HHHHHHHhCCCHHHHHhhhcCC--ceecHHHH
Q psy5228 71 NEILSEKTGHSVKKISQDTDRD--NFMSAKMA 100 (114)
Q Consensus 71 ~~~ya~~tg~s~~~i~~~m~~~--~~lta~eA 100 (114)
.+.|.+..+.|.+.|.+.+..+ -=||++||
T Consensus 10 Ak~Y~~~~~~Sk~~l~~QL~se~ge~Ft~e~A 41 (48)
T PF07553_consen 10 AKSYLKTMHMSKQGLYDQLTSEYGEGFTEEEA 41 (48)
T ss_pred HHHHHHhccCCHHHHHHHHHhhcccCCCHHHH
Confidence 5678999999999999998776 46888887
No 152
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=60.63 E-value=35 Score=26.56 Aligned_cols=40 Identities=13% Similarity=-0.011 Sum_probs=31.0
Q ss_pred CCCeEEEEehhhhhHHHHHHh-cCCCCcEEecCCceeeeecCC
Q psy5228 5 KPNVSTLCIGLAASMGAFLLA-SGTKGKRFSLPNSRIMIHQPL 46 (114)
Q Consensus 5 ~~~V~t~~~G~aaS~as~i~~-ag~~~~R~~~p~s~~miH~p~ 46 (114)
..|..+++.|-+.+.++..++ .||- .++.|++.+-+--|.
T Consensus 207 ~vP~Isvl~gPt~GG~aas~a~l~Di--iiae~~A~IgfAGPr 247 (296)
T CHL00174 207 KLFYISILTSPTTGGVTASFGMLGDI--IIAEPNAYIAFAGKR 247 (296)
T ss_pred CCCEEEEEcCCCchHHHHHHHHcccE--EEEeCCeEEEeeCHH
Confidence 358889999988877777765 4887 888888888777664
No 153
>PF04033 DUF365: Domain of unknown function (DUF365); InterPro: IPR007176 This is an archaeal family of unknown function.; PDB: 2KKU_A.
Probab=59.66 E-value=7.5 Score=25.06 Aligned_cols=23 Identities=13% Similarity=0.244 Sum_probs=17.3
Q ss_pred CHHHHHhhhcCCceecHHHHHHc
Q psy5228 81 SVKKISQDTDRDNFMSAKMAMEY 103 (114)
Q Consensus 81 s~~~i~~~m~~~~~lta~eA~~~ 103 (114)
++++|-+......|||++|..+|
T Consensus 28 n~~ei~ekygd~lFLT~eE~r~Y 50 (97)
T PF04033_consen 28 NPEEIIEKYGDRLFLTKEELRKY 50 (97)
T ss_dssp -THHHHHHTSTTBSS-HHHHHHH
T ss_pred CHHHHHHHhCcceecCHHHHHHH
Confidence 46777777788899999998876
No 154
>TIGR03427 ABC_peri_uca ABC transporter periplasmic binding protein, urea carboxylase region. Members of this family are ABC transporter periplasmic binding proteins associated with the urea carboxylase/allophanate hydrolase pathway, an alternative to urease for urea degradation. The protein is restricted to bacteria with the pathway, with its gene close to the urea carboxylase and allophanate hydrolase genes. The substrate for this transporter therefore is likely to be urea or a compound from which urea is easily derived.
Probab=58.65 E-value=27 Score=27.17 Aligned_cols=36 Identities=11% Similarity=0.261 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhCCCHHHHHhhhcCCcee-cHHHHHHc
Q psy5228 68 QRLNEILSEKTGHSVKKISQDTDRDNFM-SAKMAMEY 103 (114)
Q Consensus 68 ~~~~~~ya~~tg~s~~~i~~~m~~~~~l-ta~eA~~~ 103 (114)
+...+++++.+|.+.+++.+.+++..|+ ++++.+.+
T Consensus 226 ~ea~~~~ak~~g~~~~~~~~~l~~~~~~~~~~~~~~~ 262 (328)
T TIGR03427 226 KAALEAMAKASGTDLAGYKAQLKTTKMFYTPKEAVAF 262 (328)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHhhccccCCHHHHHhh
Confidence 4578999999999999999999888874 56655543
No 155
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=55.23 E-value=33 Score=20.85 Aligned_cols=47 Identities=15% Similarity=0.078 Sum_probs=28.4
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHh-CCCHHHHHhhhcCCceecHHHHH
Q psy5228 55 DIEIQAREI--LYLRQRLNEILSEKT-GHSVKKISQDTDRDNFMSAKMAM 101 (114)
Q Consensus 55 ~l~~~~~~l--~~~~~~~~~~ya~~t-g~s~~~i~~~m~~~~~lta~eA~ 101 (114)
+|-..+..| ..+.+...+.+|... |+|+++|++.+.=..-+|++|.-
T Consensus 18 ~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t~eee~ 67 (78)
T PF01466_consen 18 DLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLTPEEEE 67 (78)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSSHHHHH
T ss_pred HHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCCHHHHH
Confidence 344445444 345555566666654 89999999998766668887753
No 156
>PF07027 DUF1318: Protein of unknown function (DUF1318); InterPro: IPR008309 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=52.62 E-value=60 Score=20.87 Aligned_cols=48 Identities=13% Similarity=0.234 Sum_probs=38.9
Q ss_pred CCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhh
Q psy5228 36 PNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDT 89 (114)
Q Consensus 36 p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m 89 (114)
+++++-++.+ ...+++...+..+.-|+.+=..++++.|.|++++....
T Consensus 24 ~dGyL~~v~~------~~~~~~~lV~~~N~~R~~~Y~~iA~~ng~t~~~V~~~~ 71 (95)
T PF07027_consen 24 NDGYLGVVTS------ASAEVRALVAAINADRRALYQEIAKKNGITVEQVAATA 71 (95)
T ss_pred CCceEEecCC------CCHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 4667766664 33578888999999999999999999999999998754
No 157
>PHA00099 minor capsid protein
Probab=50.44 E-value=82 Score=21.74 Aligned_cols=52 Identities=12% Similarity=0.093 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHhCCCHHHHHhhhcCCceecHHHHHHcCcc
Q psy5228 53 ASDIEIQAREIL---YLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLI 106 (114)
Q Consensus 53 ~~~l~~~~~~l~---~~~~~~~~~ya~~tg~s~~~i~~~m~~~~~lta~eA~~~Gli 106 (114)
+-|.+...+-+- ...+.+-.-+.++.|.+++++.+++.+.- +-+||+.+||+
T Consensus 60 p~D~qeAl~~V~~~qeaFdsLPA~iR~~F~NdP~eml~~L~dp~--NydEa~~LGl~ 114 (147)
T PHA00099 60 PMDYQEALNVVIEAQEAFDSLPAKIRERFGNDPEEMLDFLSDPE--NYDEAKALGLV 114 (147)
T ss_pred chhHHHHHHHHHHHHHHHHhhhHHHHHHhCCCHHHHHHHHcChh--hHHHHHhccee
Confidence 334444444333 33445566688899999999999997654 45899999998
No 158
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=49.11 E-value=14 Score=18.86 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=11.3
Q ss_pred HHHhCCCHHHHHhhhc
Q psy5228 75 SEKTGHSVKKISQDTD 90 (114)
Q Consensus 75 a~~tg~s~~~i~~~m~ 90 (114)
|...|+|.+++++.+.
T Consensus 12 A~~~Gls~eeir~FL~ 27 (30)
T PF08671_consen 12 AKESGLSKEEIREFLE 27 (30)
T ss_dssp HHHTT--HHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHH
Confidence 5678999999998764
No 159
>PRK02866 cyanate hydratase; Validated
Probab=48.45 E-value=43 Score=23.38 Aligned_cols=37 Identities=14% Similarity=-0.027 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHhhhcCCceecHHHHHHc
Q psy5228 67 RQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEY 103 (114)
Q Consensus 67 ~~~~~~~ya~~tg~s~~~i~~~m~~~~~lta~eA~~~ 103 (114)
+..-.+-+|+.+|+|+.-+........-+++++|...
T Consensus 17 kGLTw~~IA~~iG~S~v~vaaa~lGQ~~ls~e~A~kl 53 (147)
T PRK02866 17 KGLTWADIAEAIGLSEVWVTAALLGQMTLPAEEAEKV 53 (147)
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHhCCCCCCHHHHHHH
Confidence 3334567888899999988888888888999988654
No 160
>cd02791 MopB_CT_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. This CD (MopB_CT_Nitrate-R-Nap) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs
Probab=47.38 E-value=20 Score=23.00 Aligned_cols=15 Identities=13% Similarity=-0.011 Sum_probs=14.0
Q ss_pred ceecHHHHHHcCcce
Q psy5228 93 NFMSAKMAMEYCLID 107 (114)
Q Consensus 93 ~~lta~eA~~~GliD 107 (114)
.||+++.|.++||.|
T Consensus 37 v~in~~dA~~lgi~~ 51 (122)
T cd02791 37 VEIHPEDAARLGLKE 51 (122)
T ss_pred EEECHHHHHHcCCCC
Confidence 799999999999985
No 161
>PRK11480 tauA taurine transporter substrate binding subunit; Provisional
Probab=47.11 E-value=1.1e+02 Score=23.17 Aligned_cols=31 Identities=6% Similarity=0.140 Sum_probs=25.4
Q ss_pred HHHHHHHhCCCHHHHHhhhcCCceecHHHHH
Q psy5228 71 NEILSEKTGHSVKKISQDTDRDNFMSAKMAM 101 (114)
Q Consensus 71 ~~~ya~~tg~s~~~i~~~m~~~~~lta~eA~ 101 (114)
..++++.+|.+.+++...+....|.+++|..
T Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (320)
T PRK11480 249 ISKLARLSGVPEGDVPGLVKGNTYLTPQQQT 279 (320)
T ss_pred HHHHHHHhCcCHHHHHHHHccCCCCCHHHHH
Confidence 4588889999999999999888888765543
No 162
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=46.62 E-value=14 Score=30.87 Aligned_cols=94 Identities=11% Similarity=0.114 Sum_probs=49.4
Q ss_pred cCCCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCcc--CCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhCC
Q psy5228 4 IKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGG--AQGQASDIE-IQAREILYLRQRLNEILSEKTGH 80 (114)
Q Consensus 4 ~~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~--~~G~~~~l~-~~~~~l~~~~~~~~~~ya~~tg~ 80 (114)
.+.|..|++.|.+.+.|-..+.+..- +..+++-.|... ..|-..-.. .+.+++....+. ..
T Consensus 396 atVPkitvI~rkayGga~~~M~~~~~-------~~~~~~AwP~a~iaVMG~egAv~i~~~k~l~~~~~~---------~~ 459 (526)
T COG4799 396 ATVPKITVITRKAYGGAYYVMGGKAL-------GPDFNYAWPTAEIAVMGPEGAVSILYRKELAAAERP---------EE 459 (526)
T ss_pred ccCCeEEEEecccccceeeeecCccC-------CCceeEecCcceeeecCHHHHHHHHHHHHhhcccCc---------hh
Confidence 35789999999999887766653332 256777777643 334211111 111222222211 00
Q ss_pred CHHHHHhhh---cCCceecHHHHHHcCcceeecccC
Q psy5228 81 SVKKISQDT---DRDNFMSAKMAMEYCLIDKILKQR 113 (114)
Q Consensus 81 s~~~i~~~m---~~~~~lta~eA~~~GliD~Ii~~~ 113 (114)
..+.+.+.. -++.+-+|--|-+.|+||.|+++.
T Consensus 460 ~~~~~~~~~~~eY~~~~~~p~~aa~r~~iD~vI~p~ 495 (526)
T COG4799 460 REALLRKQLIAEYEEQFSNPYYAAERGYIDAVIDPA 495 (526)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHhCCCCcccCHH
Confidence 011111111 133445677788999999999863
No 163
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=46.55 E-value=82 Score=23.20 Aligned_cols=41 Identities=32% Similarity=0.300 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHhhh-----cCCceecHHHHHHcCccee
Q psy5228 67 RQRLNEILSEKTGHSVKKISQDT-----DRDNFMSAKMAMEYCLIDK 108 (114)
Q Consensus 67 ~~~~~~~ya~~tg~s~~~i~~~m-----~~~~~lta~eA~~~GliD~ 108 (114)
++.+.++|..+ |.++++..+.. +++.|+..--..|+|+.+.
T Consensus 83 ~~el~~iy~~k-G~~~~~a~~v~~~l~~~~~~~~~~m~~~elg~~~~ 128 (225)
T cd02434 83 KSEMVEIYSLK-GLSEEVADQVVELLSKYRKLFVDIMMTEELGLIPD 128 (225)
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHHHhCchhhHHHHHHhhccCCCC
Confidence 45578888777 88887776633 4577777776778887543
No 164
>cd02794 MopB_CT_DmsA-EC The MopB_CT_DmsA-EC CD includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=45.94 E-value=23 Score=22.95 Aligned_cols=18 Identities=11% Similarity=0.121 Sum_probs=15.4
Q ss_pred CCceecHHHHHHcCccee
Q psy5228 91 RDNFMSAKMAMEYCLIDK 108 (114)
Q Consensus 91 ~~~~lta~eA~~~GliD~ 108 (114)
...|++|+.|.++||-|.
T Consensus 30 ~~v~i~p~~A~~~gi~~G 47 (121)
T cd02794 30 QEVWINPLDAAARGIKDG 47 (121)
T ss_pred CCEEECHHHHHHcCCCCC
Confidence 357999999999999873
No 165
>PF00216 Bac_DNA_binding: Bacterial DNA-binding protein; InterPro: IPR000119 Bacteria synthesise a set of small, usually basic proteins of about 90 residues that bind DNA and are known as histone-like proteins [, ]. Examples include the HU protein in Escherichia coli is a dimer of closely related alpha and beta chains and in other bacteria can be a dimer of identical chains. HU-type proteins have been found in a variety of eubacteria, cyanobacteria and archaebacteria, and are also encoded in the chloroplast genome of some algae []. The integration host factor (IHF), a dimer of closely related chains which seem to function in genetic recombination as well as in translational and transcriptional control [] is found in enterobacteria and viral proteins include the African Swine fever virus protein A104R (or LMW5-AR) []. The exact function of these proteins is not yet clear but they are capable of wrapping DNA and stabilising it from denaturation under extreme environmental conditions. The structure is known for one of these proteins []. The protein exists as a dimer and two "beta-arms" function as the non-specific binding site for bacterial DNA. ; GO: 0003677 DNA binding; PDB: 3C4I_B 2O97_A 1MUL_A 1P78_A 1P51_C 1P71_B 2HT0_A 1OWG_A 2IIF_A 1OUZ_A ....
Probab=44.52 E-value=33 Score=20.90 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHhhhc
Q psy5228 67 RQRLNEILSEKTGHSVKKISQDTD 90 (114)
Q Consensus 67 ~~~~~~~ya~~tg~s~~~i~~~m~ 90 (114)
++.+.+.+++++|.|..++.+.++
T Consensus 3 k~eli~~ia~~~~~s~~~v~~vl~ 26 (90)
T PF00216_consen 3 KKELIKRIAEKTGLSKKDVEAVLD 26 (90)
T ss_dssp HHHHHHHHHHHHTSSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHH
Confidence 456888999999999999888764
No 166
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=44.36 E-value=58 Score=18.26 Aligned_cols=37 Identities=22% Similarity=0.129 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHhhhcCC-ceecHHH
Q psy5228 63 ILYLRQRLNEILSEKTGHSVKKISQDTDRD-NFMSAKM 99 (114)
Q Consensus 63 l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~-~~lta~e 99 (114)
+..-+..=..-+++.+|++...+.++.... ..++.+.
T Consensus 5 ~m~~~~it~~~La~~~gis~~tl~~~~~~~~~~~~~~~ 42 (63)
T PF13443_consen 5 LMAERGITQKDLARKTGISRSTLSRILNGKPSNPSLDT 42 (63)
T ss_dssp HHHHTT--HHHHHHHHT--HHHHHHHHTTT-----HHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHhcccccccHHH
Confidence 333444445668899999999999998877 4566554
No 167
>smart00411 BHL bacterial (prokaryotic) histone like domain.
Probab=43.90 E-value=33 Score=20.95 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHhhhc
Q psy5228 67 RQRLNEILSEKTGHSVKKISQDTD 90 (114)
Q Consensus 67 ~~~~~~~ya~~tg~s~~~i~~~m~ 90 (114)
++.+.+.+++++|.+..++...++
T Consensus 3 k~eli~~ia~~~~~~~~~v~~vl~ 26 (90)
T smart00411 3 KSELIDAIAEKAGLSKKDAKAAVD 26 (90)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHH
Confidence 356788899999999998888764
No 168
>PF13171 DUF4004: Protein of unknown function (DUF4004)
Probab=43.30 E-value=69 Score=23.54 Aligned_cols=43 Identities=12% Similarity=0.225 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHhhh---cCCceecHHHHHHcCccee
Q psy5228 66 LRQRLNEILSEKTGHSVKKISQDT---DRDNFMSAKMAMEYCLIDK 108 (114)
Q Consensus 66 ~~~~~~~~ya~~tg~s~~~i~~~m---~~~~~lta~eA~~~GliD~ 108 (114)
.-+++.++..-+-..|.|++.++. ..+.-++.++-++.|+++.
T Consensus 52 IL~RIekI~~mKd~~SLDELA~mfSp~~~~~~~~~~~l~~~~ivs~ 97 (199)
T PF13171_consen 52 ILERIEKIQKMKDDLSLDELAEMFSPNVSDVVFTEEELLKRNIVSQ 97 (199)
T ss_pred HHHHHHHHHHhcccCCHHHHHHHcCCCcccceecHHHHHHcCcccH
Confidence 344566666667779999999998 5788999999999999874
No 169
>TIGR02607 antidote_HigA addiction module antidote protein, HigA family. Members of this family form a distinct clade within the larger family HTH_3 of helix-turn-helix proteins, described by Pfam model pfam01381. Members of this clade are strictly bacterial and nearly always shorter than 110 amino acids. This family includes the characterized member HigA, without which the killer protein HigB cannot be cloned. The hig (host inhibition of growth) system is noted to be unusual in that killer protein is uncoded by the upstream member of the gene pair.
Probab=43.16 E-value=38 Score=19.90 Aligned_cols=31 Identities=23% Similarity=0.233 Sum_probs=23.7
Q ss_pred HHHHHHHhCCCHHHHHhhhcCCceecHHHHH
Q psy5228 71 NEILSEKTGHSVKKISQDTDRDNFMSAKMAM 101 (114)
Q Consensus 71 ~~~ya~~tg~s~~~i~~~m~~~~~lta~eA~ 101 (114)
..-+++++|.+...|..+......++++.+.
T Consensus 21 ~~~lA~~~gis~~tis~~~~g~~~~~~~~~~ 51 (78)
T TIGR02607 21 IRALAKALGVSRSTLSRIVNGRRGITADMAL 51 (78)
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCCCCHHHHH
Confidence 5568888888888888888776667776644
No 170
>cd02787 MopB_CT_ydeP The MopB_CT_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=42.86 E-value=16 Score=23.30 Aligned_cols=17 Identities=18% Similarity=0.047 Sum_probs=15.1
Q ss_pred CceecHHHHHHcCccee
Q psy5228 92 DNFMSAKMAMEYCLIDK 108 (114)
Q Consensus 92 ~~~lta~eA~~~GliD~ 108 (114)
..||+|+.|.++||-|.
T Consensus 32 ~v~i~p~dA~~lgI~dG 48 (112)
T cd02787 32 VVFMNPDDIARLGLKAG 48 (112)
T ss_pred EEEECHHHHHHhCCCCC
Confidence 37999999999999884
No 171
>PF01568 Molydop_binding: Molydopterin dinucleotide binding domain; InterPro: IPR006657 A domain in this entry corresponds to the C-terminal domain IV in dimethyl sulphoxide (DMSO)reductase which interacts with the 2-amino pyrimidone ring of both molybdopterin guanine dinucleotide molecules [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2IVF_A 1OGY_G 3ML1_A 3O5A_A 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E ....
Probab=42.63 E-value=16 Score=23.07 Aligned_cols=16 Identities=13% Similarity=-0.047 Sum_probs=12.8
Q ss_pred CceecHHHHHHcCcce
Q psy5228 92 DNFMSAKMAMEYCLID 107 (114)
Q Consensus 92 ~~~lta~eA~~~GliD 107 (114)
-.||++++|.++||-|
T Consensus 31 ~v~inp~dA~~~Gi~~ 46 (110)
T PF01568_consen 31 FVEINPEDAAKLGIKD 46 (110)
T ss_dssp EEEEEHHHHHHCT--T
T ss_pred EEEEcHHHHHHhcCcC
Confidence 4789999999999987
No 172
>PF12844 HTH_19: Helix-turn-helix domain; PDB: 3LIS_B 3LFP_A 2XIU_B 2GZU_B 2XJ3_A 1UTX_A 2XI8_B 3F6W_C 3EUS_B.
Probab=41.08 E-value=67 Score=18.05 Aligned_cols=40 Identities=20% Similarity=0.063 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHhhhcCCceecHHHHHH
Q psy5228 63 ILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAME 102 (114)
Q Consensus 63 l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~~~lta~eA~~ 102 (114)
+...+..-..-+++.+|.+...+..+......+++.....
T Consensus 7 ~r~~~~lt~~~~a~~~~i~~~~i~~~e~g~~~~~~~~l~~ 46 (64)
T PF12844_consen 7 LREEKGLTQKDLAEKLGISRSTISKIENGKRKPSVSTLKK 46 (64)
T ss_dssp HHHHCT--HHHHHHHHTS-HHHHHHHHTTSS--BHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHCCCcCCCHHHHHH
Confidence 3333333456678889999999999888887777776643
No 173
>COG3093 VapI Plasmid maintenance system antidote protein [General function prediction only]
Probab=40.79 E-value=41 Score=22.16 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=24.2
Q ss_pred HHHHHHHhCCCHHHHHhhhcCCceecHHHHHHcC
Q psy5228 71 NEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYC 104 (114)
Q Consensus 71 ~~~ya~~tg~s~~~i~~~m~~~~~lta~eA~~~G 104 (114)
..-+|+..|.++..|.+++....-+|++-|+.++
T Consensus 26 ~~~lA~~lgV~r~~is~ling~~~iT~dmAlrL~ 59 (104)
T COG3093 26 QTELAEALGVTRNTISELINGRRAITADMALRLA 59 (104)
T ss_pred HHHHHHHhCCCHHHHHHHHcCCcCCCHHHHHHHH
Confidence 4556777777777777777777777777776543
No 174
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=40.67 E-value=79 Score=23.52 Aligned_cols=43 Identities=16% Similarity=0.137 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHhhh-----cCCceecHHHHHHcCcceee
Q psy5228 66 LRQRLNEILSEKTGHSVKKISQDT-----DRDNFMSAKMAMEYCLIDKI 109 (114)
Q Consensus 66 ~~~~~~~~ya~~tg~s~~~i~~~m-----~~~~~lta~eA~~~GliD~I 109 (114)
.++.+.++|.++ |.++++.+... +++.|+...-..|+|+.++-
T Consensus 99 e~~el~~iy~~~-G~~~~~a~~~~~~l~~~~~~~~~~~~~~e~g~~~~~ 146 (234)
T cd02433 99 EAAELALIYRAK-GLDEEEAKRVASQLMNDPEQALDTLAREELGLDPEL 146 (234)
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHhCcchhHHHHHHHhcCCCccc
Confidence 356788899777 99888777543 35678877777888886653
No 175
>PF12535 Nudix_N: Hydrolase of X-linked nucleoside diphosphate N terminal ; PDB: 3Q1P_B 3Q4I_B.
Probab=40.18 E-value=31 Score=20.17 Aligned_cols=29 Identities=21% Similarity=0.186 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHhh
Q psy5228 60 AREILYLRQRLNEILSEKTGHSVKKISQD 88 (114)
Q Consensus 60 ~~~l~~~~~~~~~~ya~~tg~s~~~i~~~ 88 (114)
.+...++++...++++..|+.+.++|..+
T Consensus 28 ~ERy~~lr~ia~ella~~s~~~~e~i~~l 56 (58)
T PF12535_consen 28 RERYEELREIAAELLAEYSDLPPEEIKEL 56 (58)
T ss_dssp HHHHHHHHHHHHHHHCCHTT--HHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 45566778888899999999999998764
No 176
>cd02786 MopB_CT_3 The MopB_CT_3 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=40.13 E-value=20 Score=22.90 Aligned_cols=17 Identities=12% Similarity=0.036 Sum_probs=15.1
Q ss_pred CceecHHHHHHcCccee
Q psy5228 92 DNFMSAKMAMEYCLIDK 108 (114)
Q Consensus 92 ~~~lta~eA~~~GliD~ 108 (114)
..||+|+.|.++||-|.
T Consensus 32 ~v~i~p~dA~~lgi~~G 48 (116)
T cd02786 32 TLLIHPADAAARGIADG 48 (116)
T ss_pred EEEECHHHHHHcCCCCC
Confidence 48999999999999973
No 177
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=39.79 E-value=16 Score=20.93 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHH---hhhcCCceecH
Q psy5228 61 REILYLRQRLNEILSEKTGHSVKKIS---QDTDRDNFMSA 97 (114)
Q Consensus 61 ~~l~~~~~~~~~~ya~~tg~s~~~i~---~~m~~~~~lta 97 (114)
++..++-+.+.+.+++.+|.+.+.+. ..++++.|+.+
T Consensus 15 EqK~~L~~~it~a~~~~~~~p~~~v~V~i~ev~~~~~~~~ 54 (60)
T PRK02289 15 EQKNALAREVTEVVSRIAKAPKEAIHVFINDMPEGTYYPQ 54 (60)
T ss_pred HHHHHHHHHHHHHHHHHhCcCcceEEEEEEEeChhheEEC
Confidence 44566777888999999999877665 34567777653
No 178
>PHA01976 helix-turn-helix protein
Probab=39.73 E-value=71 Score=18.11 Aligned_cols=38 Identities=16% Similarity=0.035 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHhhhcCCceecHHH
Q psy5228 62 EILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKM 99 (114)
Q Consensus 62 ~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~~~lta~e 99 (114)
.+...+..-..-+|+++|.+...|.++.....-.+.+.
T Consensus 9 ~~R~~~glt~~~lA~~~gvs~~~v~~~e~g~~~p~~~~ 46 (67)
T PHA01976 9 KARNARAWSAPELSRRAGVRHSLIYDFEADKRLPNLKT 46 (67)
T ss_pred HHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHH
Confidence 33333333456788899999988888776665555443
No 179
>PRK07857 hypothetical protein; Provisional
Probab=39.08 E-value=67 Score=21.17 Aligned_cols=39 Identities=15% Similarity=0.095 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcC
Q psy5228 53 ASDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDR 91 (114)
Q Consensus 53 ~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~ 91 (114)
..++...-++++.+++.|++++++|.....+.-.-....
T Consensus 27 ~~~L~~lR~eID~ID~eIl~LL~eR~~la~eIg~~K~~~ 65 (106)
T PRK07857 27 DAEIDELREEIDRLDAEILALVKRRTEVSQAIGKARMAS 65 (106)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456777778888889999999999998776655544433
No 180
>cd02785 MopB_CT_4 The MopB_CT_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=38.86 E-value=21 Score=23.24 Aligned_cols=16 Identities=6% Similarity=-0.141 Sum_probs=14.6
Q ss_pred CceecHHHHHHcCcce
Q psy5228 92 DNFMSAKMAMEYCLID 107 (114)
Q Consensus 92 ~~~lta~eA~~~GliD 107 (114)
-.|++|+.|.++||.|
T Consensus 33 ~v~i~p~dA~~~gi~~ 48 (124)
T cd02785 33 RVKINPIDAAARGIAH 48 (124)
T ss_pred eEEECHHHHHHcCCCC
Confidence 3799999999999997
No 181
>cd02792 MopB_CT_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. This CD (MopB_CT_Formate-Dh-Na-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=38.48 E-value=32 Score=21.99 Aligned_cols=15 Identities=20% Similarity=0.164 Sum_probs=14.0
Q ss_pred ceecHHHHHHcCcce
Q psy5228 93 NFMSAKMAMEYCLID 107 (114)
Q Consensus 93 ~~lta~eA~~~GliD 107 (114)
.|++++.|.++||-|
T Consensus 37 v~i~p~dA~~lgi~~ 51 (122)
T cd02792 37 VEISPELAAERGIKN 51 (122)
T ss_pred EEECHHHHHHcCCCC
Confidence 899999999999985
No 182
>PF06518 DUF1104: Protein of unknown function (DUF1104); InterPro: IPR009488 This family consists of several hypothetical proteins of unknown function which appear to be found exclusively in Helicobacter pylori.; PDB: 2XRH_A.
Probab=38.10 E-value=1.1e+02 Score=19.65 Aligned_cols=42 Identities=24% Similarity=0.199 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHhC-CCHHHHHhhh--------cCCceecHHHHHHcCc
Q psy5228 64 LYLRQRLNEILSEKTG-HSVKKISQDT--------DRDNFMSAKMAMEYCL 105 (114)
Q Consensus 64 ~~~~~~~~~~ya~~tg-~s~~~i~~~m--------~~~~~lta~eA~~~Gl 105 (114)
..+...+.+.+.+++. +|.++..+.+ .+---||+.|+.+.||
T Consensus 43 k~f~~~~~~~~~kn~~~ms~~e~~k~~~ev~k~~~~~~~~mS~kE~~~~gL 93 (93)
T PF06518_consen 43 KDFKKQFKEAARKNLSKMSVEERKKRREEVRKALEKRIKKMSVKEAKESGL 93 (93)
T ss_dssp HHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHT----S---------
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhccccccccccC
Confidence 3455666777777766 5766655544 3445699999999986
No 183
>PF09675 Chlamy_scaf: Chlamydia-phage Chp2 scaffold (Chlamy_scaf); InterPro: IPR014131 Members of this entry are encoded by genes in chlamydiaphage such as Vp3. These viruses have around eight genes and infect obligately intracellular bacterial pathogens of the genus Chlamydia. This protein is annotated as VP3 or structural protein (as if a protein of mature viral particles), however, it is displaced from procapsids as DNA is packaged, and therefore is more correctly described as a scaffolding protein.
Probab=37.82 E-value=1.2e+02 Score=20.20 Aligned_cols=59 Identities=10% Similarity=0.112 Sum_probs=37.9
Q ss_pred cCCCCH---HHHHHHHHHHHHHH---HHHHHHHHHHhCCCHHHHHhhhcCCceecHHHHHHcCccee
Q psy5228 48 GAQGQA---SDIEIQAREILYLR---QRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDK 108 (114)
Q Consensus 48 ~~~G~~---~~l~~~~~~l~~~~---~~~~~~ya~~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~ 108 (114)
..+|.- -|.++..+-+.+.+ +.+-.-..++.|.+++++-+++.+.. +.+|++++||++.
T Consensus 22 ~~Ygd~s~~~DyqeAln~V~e~~eaFd~LPa~iRe~F~N~P~efl~f~~dp~--N~ee~~~Lgl~~~ 86 (114)
T PF09675_consen 22 PEYGDCSSPFDYQEALNMVAEANEAFDELPAHIRERFNNDPEEFLEFLNDPK--NYEEAIKLGLLEP 86 (114)
T ss_pred CcccccCCHHhHHHHHHHHHHHHHHHHHchHHHHHHhCCCHHHHHHHHhCcc--CHHHHHHhccccC
Confidence 355643 34444433333333 34455577889999999888775543 6899999999864
No 184
>PF04814 HNF-1_N: Hepatocyte nuclear factor 1 (HNF-1), N terminus; InterPro: IPR006899 This domain consists of the N terminus of homeobox-containing transcription factor HNF-1. This region contains a dimerisation sequence [] and an acidic region that may be involved in transcription activation. Mutations and the common Ala/Val 98 polymorphism in HNF-1 cause the type 3 form of maturity-onset diabetes of the young (MODY3) [].; GO: 0045893 positive regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2GYP_B 1IC8_B 2H8R_B 1G2Y_D 1F93_H 1G39_D 1G2Z_B 1JB6_B.
Probab=37.09 E-value=58 Score=23.56 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=17.1
Q ss_pred HHHHHHhCCCHHHHHhhhcCCceecHH
Q psy5228 72 EILSEKTGHSVKKISQDTDRDNFMSAK 98 (114)
Q Consensus 72 ~~ya~~tg~s~~~i~~~m~~~~~lta~ 98 (114)
+..++.||++...|..++.+.+-|+.+
T Consensus 135 ~~V~q~TGisQS~lSq~L~kGt~Mk~q 161 (180)
T PF04814_consen 135 REVVQVTGISQSHLSQHLNKGTPMKEQ 161 (180)
T ss_dssp HHHHHHHT--HHHHHHHHCTB----HH
T ss_pred HHHHHHhhhhHHHHHHHHHcCCCccHH
Confidence 345678999999999999999888765
No 185
>cd00508 MopB_CT_Fdh-Nap-like This CD includes formate dehydrogenases (Fdh) H and N; nitrate reductases, Nap and Nas; and other related proteins. Formate dehydrogenase H is a component of the anaerobic formate hydrogen lyase complex and catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. Formate dehydrogenase N (alpha subunit) is the major electron donor to the bacterial nitrate respiratory chain and nitrate reductases, Nap and Nas, catalyze the reduction of nitrate to nitrite. This CD (MopB_CT_Fdh-Nap-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=36.54 E-value=24 Score=22.36 Aligned_cols=16 Identities=13% Similarity=-0.087 Sum_probs=14.6
Q ss_pred CceecHHHHHHcCcce
Q psy5228 92 DNFMSAKMAMEYCLID 107 (114)
Q Consensus 92 ~~~lta~eA~~~GliD 107 (114)
-.|++++.|.++||-|
T Consensus 36 ~v~inp~dA~~lgi~~ 51 (120)
T cd00508 36 FVEIHPEDAARLGIKD 51 (120)
T ss_pred EEEECHHHHHHcCCCC
Confidence 3899999999999987
No 186
>cd02775 MopB_CT Molybdopterin-Binding, C-terminal (MopB_CT) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=36.32 E-value=25 Score=21.50 Aligned_cols=18 Identities=11% Similarity=-0.071 Sum_probs=15.5
Q ss_pred CCceecHHHHHHcCccee
Q psy5228 91 RDNFMSAKMAMEYCLIDK 108 (114)
Q Consensus 91 ~~~~lta~eA~~~GliD~ 108 (114)
...||++++|.++||-|.
T Consensus 23 ~~v~~~~~da~~lgl~~G 40 (101)
T cd02775 23 PVVEINPEDAAALGIKDG 40 (101)
T ss_pred CEEEECHHHHHHcCCCCC
Confidence 458999999999999863
No 187
>PF01515 PTA_PTB: Phosphate acetyl/butaryl transferase; InterPro: IPR002505 This entry contains both phosphate acetyltransferase 2.3.1.8 from EC: Acetyl-CoA + phosphate = CoA + acetyl phosphate and phosphate butaryltransferase 2.3.1.19 from EC: Butanoyl-CoA + phosphate = CoA + butanoyl phosphate These enzymes catalyse the transfer of an acetyl or butaryl group to orthophosphate.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 2AF3_D 1QZT_D 2AF4_D 1VMI_A 3UF6_B 3U9E_A 3TNG_A 4E4R_A 1R5J_A 1YCO_A ....
Probab=36.30 E-value=1.1e+02 Score=23.78 Aligned_cols=62 Identities=18% Similarity=0.193 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHHHHH--------------HHHHHHHHHHHH---HHhCCCHHHHHhhhcCCceecHHHHHHcCcceeecc
Q psy5228 49 AQGQASDIEIQAREI--------------LYLRQRLNEILS---EKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILK 111 (114)
Q Consensus 49 ~~G~~~~l~~~~~~l--------------~~~~~~~~~~ya---~~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~Ii~ 111 (114)
..|+..+++..++++ ....+.+.+.|. ++-|.+.+++.+.+. +....+-..++.|=+|-++.
T Consensus 44 LvG~~~~I~~~a~~~~l~l~~~eIid~~~~~~~~~y~~~~~~lr~rKG~~~~~a~~~~~-~~~~~a~~mv~~G~aD~lv~ 122 (319)
T PF01515_consen 44 LVGDREEIREIAKELGLDLDGFEIIDPEDSEKLEEYAEEYYELRQRKGMTPEEARREVR-DPNYFAAMMVRLGDADALVK 122 (319)
T ss_dssp EES-HHHHHHHHHHTTC--TTSEEE-TTTSTTHHHHHHHHHHHHTTCTS-HHHHHHHTT-SHHHHHHHHHHTTSSSEEEE
T ss_pred EEeChHHhcchhhhcccccccceecCccccHHHHHHHHHHHHHhccccCCHHHHHHHHH-HHHHHHHHHHHcCCCCEEec
Confidence 357777777777665 111234444443 345679999999999 88888889999999998763
No 188
>COG4001 Predicted metal-binding protein [General function prediction only]
Probab=36.21 E-value=49 Score=21.39 Aligned_cols=45 Identities=9% Similarity=0.108 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHhhhcCCceecHHHHHHcCc
Q psy5228 61 REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCL 105 (114)
Q Consensus 61 ~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~~~lta~eA~~~Gl 105 (114)
+.+.++-+.+++.=+...|...++|.+.|..+.|..+--.+-.||
T Consensus 55 ra~a~ivkkive~garAfgVdee~iRE~~~d~ywrrGlasvl~GI 99 (102)
T COG4001 55 RALASIVKKIVERGARAFGVDEEDIREQMHDQYWRRGLASVLRGI 99 (102)
T ss_pred HHHHHHHHHHHHhcchhcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555666666677889999999999999987655554443
No 189
>cd00591 HU_IHF Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and higher-order nucleoprotein complex assembly. The dimer subunits associate to form a compact globular core from which two beta ribbon arms (one from each subunit) protrude. The beta arms track and bind the DNA minor groove. Despite sequence and structural similarity, IHF and HU can be distinguished by their different DNA substrate preferences.
Probab=36.09 E-value=51 Score=19.87 Aligned_cols=24 Identities=38% Similarity=0.459 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHhhhc
Q psy5228 67 RQRLNEILSEKTGHSVKKISQDTD 90 (114)
Q Consensus 67 ~~~~~~~ya~~tg~s~~~i~~~m~ 90 (114)
++.+++.+++++|.+..++...++
T Consensus 2 K~~l~~~ia~~~~~~~~~v~~vl~ 25 (87)
T cd00591 2 KSELIEAIAEKTGLSKKDAEAAVD 25 (87)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHH
Confidence 356788899999999988887764
No 190
>TIGR02763 chlamy_scaf chlamydiaphage internal scaffolding protein. Members of this protein family are encoded by genes in chlamydiaphage such as Chp2, viruses with around eight genes that infect obligately intracellular bacterial pathogens of the genus Chlamydia. This protein, initially designated VP3 (as if a structural protein of mature viral particles), is displaced from procapsids as DNA is packaged, and therefore is described as a scafolding protein.
Probab=35.91 E-value=1.3e+02 Score=19.93 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHhhhcCCceecHHHHHHcCccee
Q psy5228 66 LRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDK 108 (114)
Q Consensus 66 ~~~~~~~~ya~~tg~s~~~i~~~m~~~~~lta~eA~~~GliD~ 108 (114)
..+.+-.-..++.|.+++++.++++++. +-+|++.+||.|.
T Consensus 46 aFdsLPAkvRe~FgNdPeeml~~L~d~~--nyde~~algll~~ 86 (114)
T TIGR02763 46 AFDSLPAKVRENFGNDPEEMLSWLEDEA--NYDEVEALGLLDP 86 (114)
T ss_pred HHHHhhHHHHHHhCCCHHHHHHHHhChh--hHHHHHHhccccc
Confidence 3445566678899999999999986643 2357889999885
No 191
>PF14420 Clr5: Clr5 domain
Probab=35.25 E-value=52 Score=18.62 Aligned_cols=37 Identities=3% Similarity=0.106 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHhhhcCCceecHHH
Q psy5228 62 EILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKM 99 (114)
Q Consensus 62 ~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~~~lta~e 99 (114)
+-+..+..|.++|. .-++|.++|.+.|....=|.|.+
T Consensus 4 ~We~~K~~I~~LY~-~e~~tl~~v~~~M~~~~~F~at~ 40 (54)
T PF14420_consen 4 DWEPHKEEIERLYI-DENKTLEEVMEIMKEEHGFKATK 40 (54)
T ss_pred hHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHhCCCcCH
Confidence 34566777888886 44689999999998877776654
No 192
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=34.85 E-value=71 Score=16.57 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Q psy5228 55 DIEIQAREILYLRQRLNEILSEKTGHSVKKIS 86 (114)
Q Consensus 55 ~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~ 86 (114)
.+.+.++.+---...+.+.+.+.+|.++.+..
T Consensus 10 ~l~~iA~~~g~S~~~f~r~Fk~~~g~tp~~y~ 41 (42)
T PF00165_consen 10 TLEDIAEQAGFSPSYFSRLFKKETGMTPKQYR 41 (42)
T ss_dssp -HHHHHHHHTS-HHHHHHHHHHHTSS-HHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHCcCHHHHh
Confidence 34445555555566778888888888877653
No 193
>cd02782 MopB_CT_1 The MopB_CT_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=34.72 E-value=26 Score=22.83 Aligned_cols=16 Identities=19% Similarity=0.034 Sum_probs=14.6
Q ss_pred CceecHHHHHHcCcce
Q psy5228 92 DNFMSAKMAMEYCLID 107 (114)
Q Consensus 92 ~~~lta~eA~~~GliD 107 (114)
..||+++.|.++||-|
T Consensus 34 ~v~i~p~dA~~~gi~~ 49 (129)
T cd02782 34 TLRIHPDDAAALGLAD 49 (129)
T ss_pred eEEECHHHHHHcCCCC
Confidence 4799999999999986
No 194
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=34.56 E-value=1.1e+02 Score=22.94 Aligned_cols=79 Identities=16% Similarity=0.121 Sum_probs=44.1
Q ss_pred CCeEEEEehhhhhHHHHHHhcCCCCcEEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Q psy5228 6 PNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSVKKI 85 (114)
Q Consensus 6 ~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i 85 (114)
-||.+.+.|.|.|-|.+-.- -.-++-+++| -.++|-.. ...-++-|.+|.|++
T Consensus 106 HpvI~Lv~G~A~SGaFLA~G-lqA~rl~AL~--ga~i~vM~------------------------~~s~ARVTk~~ve~L 158 (234)
T PF06833_consen 106 HPVIGLVYGKAMSGAFLAHG-LQANRLIALP--GAMIHVMG------------------------KPSAARVTKRPVEEL 158 (234)
T ss_pred CCeEEEEecccccHHHHHHH-HHhcchhcCC--CCeeecCC------------------------hHHhHHHhhcCHHHH
Confidence 48999999999997765432 2222367777 45566442 122344556666666
Q ss_pred HhhhcCCcee--cHHHHHHcCcceeecc
Q psy5228 86 SQDTDRDNFM--SAKMAMEYCLIDKILK 111 (114)
Q Consensus 86 ~~~m~~~~~l--ta~eA~~~GliD~Ii~ 111 (114)
+++-+..--| ..+-=...|.++++++
T Consensus 159 e~la~s~PvfA~gi~ny~~lG~l~~l~~ 186 (234)
T PF06833_consen 159 EELAKSVPVFAPGIENYAKLGALDELWD 186 (234)
T ss_pred HHHhhcCCCcCCCHHHHHHhccHHHHhc
Confidence 6655433222 3334445555555544
No 195
>TIGR00673 cynS cyanate hydratase. Alternate names include cyanate lyase, cyanase and cyanate hydrolase.
Probab=34.46 E-value=88 Score=21.94 Aligned_cols=37 Identities=8% Similarity=-0.099 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHhhhcCCceecHHHHHHc
Q psy5228 67 RQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEY 103 (114)
Q Consensus 67 ~~~~~~~ya~~tg~s~~~i~~~m~~~~~lta~eA~~~ 103 (114)
+..-.+-+|+.+|+|+.-+....-.-..+++++|...
T Consensus 20 KGLTwe~IAe~iG~sevwvaaa~lGQ~~ls~e~A~kl 56 (150)
T TIGR00673 20 KGLTFADIADGLGLAEVFVAAALYGQAAAPADEARLV 56 (150)
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHhCCCCCCHHHHHHH
Confidence 3334677888999998888888888899999998764
No 196
>TIGR01580 narG respiratory nitrate reductase, alpha subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the alpha subunit for nitrate reductase I (narG) and nitrate reductase II (narZ) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model The seed members used to make the model include Nitrate reductases from Pseudomonas fluorescens, E.coli and B.subtilis. All seed members are experimentally characterized. Some unpublished nitrate reductases, that are shorter sequences, and probably fragments fall in between the noise and trusted cutoffs. P
Probab=34.44 E-value=35 Score=31.60 Aligned_cols=45 Identities=18% Similarity=0.261 Sum_probs=31.4
Q ss_pred EEecCCceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcCCceecHHHHHHcCcce
Q psy5228 32 RFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLID 107 (114)
Q Consensus 32 R~~~p~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~~~lta~eA~~~GliD 107 (114)
||..||+++.||.-+. .| + .|.. ..|-| -..|||++.|.+.|+.|
T Consensus 1088 ~~~TpH~kW~IHSty~---dn----------~-----~MLt--L~RGg-----------p~vw~s~~DA~~~Gi~D 1132 (1235)
T TIGR01580 1088 NFLTPHQKWGIHSTYS---DN----------L-----LMLT--LGRGG-----------PVVWLSEADAKDLGIAD 1132 (1235)
T ss_pred EEeCCCCCCccccccc---cc----------H-----HHHh--hccCC-----------CeEEeCHHHHHHcCCCC
Confidence 7999999999997643 22 1 1111 11222 46899999999999998
No 197
>TIGR01795 CM_mono_cladeE monofunctional chorismate mutase, alpha proteobacterial type. The alpha proteobacterial members are trusted because the pathways of CM are evident and there is only one plausible CM in the genome. In S. coelicolor, however, there is another aparrent monofunctional CM.
Probab=34.14 E-value=53 Score=20.90 Aligned_cols=31 Identities=10% Similarity=0.172 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Q psy5228 54 SDIEIQAREILYLRQRLNEILSEKTGHSVKK 84 (114)
Q Consensus 54 ~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~ 84 (114)
.+|...-.+++.+++.+.+++++|++...+.
T Consensus 3 ~~L~~lR~~ID~ID~qLv~LL~~R~~~~~~i 33 (94)
T TIGR01795 3 AELKALRQSIDNIDAAVIHMLAERFKCTSQV 33 (94)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666788888889999999998765443
No 198
>cd02788 MopB_CT_NDH-1_NuoG2-N7 MopB_CT_NDH-1_NuoG2-N7: C-terminal region of the NuoG-like subunit (of the variant with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain, is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups
Probab=32.93 E-value=31 Score=21.57 Aligned_cols=16 Identities=25% Similarity=0.077 Sum_probs=14.3
Q ss_pred CceecHHHHHHcCcce
Q psy5228 92 DNFMSAKMAMEYCLID 107 (114)
Q Consensus 92 ~~~lta~eA~~~GliD 107 (114)
-.||+|+.|.++||-|
T Consensus 30 ~v~inp~dA~~lGi~~ 45 (96)
T cd02788 30 YARLSPADAARLGLAD 45 (96)
T ss_pred EEEECHHHHHHcCCCC
Confidence 3789999999999985
No 199
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=32.73 E-value=27 Score=28.86 Aligned_cols=90 Identities=11% Similarity=0.029 Sum_probs=51.4
Q ss_pred hhhhhHHHHHHhcCCCCcEEecCCceee--eecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcC
Q psy5228 14 GLAASMGAFLLASGTKGKRFSLPNSRIM--IHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDR 91 (114)
Q Consensus 14 G~aaS~as~i~~ag~~~~R~~~p~s~~m--iH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~ 91 (114)
....-.|++||.|.++ +.-.|++.+- .|+-.. .....|=++--..|-..-+++.+.+.+++ ...-++..+-.+
T Consensus 191 ~~~~T~agiLlf~kd~--~~~lpqa~V~~~~~~g~~--~~~~~d~~e~~g~l~~~v~~~i~fikrn~-~~~~~v~~l~r~ 265 (467)
T COG2865 191 DGKPTNAGILLFAKDP--RAFLPQARVRIIRYKGKN--KIEILDRKEIRGNLPEQVERAISFIKRNL-NVPYVVEGLRRV 265 (467)
T ss_pred ccchhhHhHHHhcCCh--hHhCCccEEEEEEEecCC--CcchhhHHHhccCHHHHHHHHHHHHHHhc-CCceeecceeEe
Confidence 3445567788888886 8888877443 333211 11122222222233334445666777777 455555556677
Q ss_pred CceecHHHHHHcCccee
Q psy5228 92 DNFMSAKMAMEYCLIDK 108 (114)
Q Consensus 92 ~~~lta~eA~~~GliD~ 108 (114)
+.|.-|++|+.-=++..
T Consensus 266 ~v~dyP~~alREai~NA 282 (467)
T COG2865 266 EVWDYPLEALREAIINA 282 (467)
T ss_pred ecccCCHHHHHHHHHHH
Confidence 88888888876544443
No 200
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=32.62 E-value=1.1e+02 Score=17.96 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=15.0
Q ss_pred HHHHHHHhCCCHHHHHhhh
Q psy5228 71 NEILSEKTGHSVKKISQDT 89 (114)
Q Consensus 71 ~~~ya~~tg~s~~~i~~~m 89 (114)
..-+|+.+|+|.+++.+.+
T Consensus 23 ~eEiA~~lgis~~~v~~~l 41 (78)
T PF04539_consen 23 DEEIAEELGISVEEVRELL 41 (78)
T ss_dssp HHHHHHHHTS-HHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHH
Confidence 4557899999999999877
No 201
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=32.21 E-value=1.7e+02 Score=22.75 Aligned_cols=40 Identities=25% Similarity=0.232 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcCC
Q psy5228 53 ASDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRD 92 (114)
Q Consensus 53 ~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~ 92 (114)
...+..+.+.+.++-..+.+++++..|++.+.+.+.....
T Consensus 149 r~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~ 188 (337)
T PLN02639 149 KEIVSTYCREVRELGFRLQEAISESLGLEKDYIKNVLGEQ 188 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCC
Confidence 4567788899999999999999999999998887766443
No 202
>PLN02276 gibberellin 20-oxidase
Probab=32.13 E-value=1.6e+02 Score=23.14 Aligned_cols=39 Identities=10% Similarity=0.019 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcCC
Q psy5228 54 SDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRD 92 (114)
Q Consensus 54 ~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~ 92 (114)
..++.+.+.+.++-..+.+++++..|++.+.+.+.....
T Consensus 166 ~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~ 204 (361)
T PLN02276 166 KVYQEYCEAMKTLSLKIMELLGISLGVDRGYYRKFFEDG 204 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCc
Confidence 356788899999999999999999999988888776543
No 203
>PTZ00273 oxidase reductase; Provisional
Probab=32.09 E-value=1.7e+02 Score=22.46 Aligned_cols=40 Identities=15% Similarity=0.038 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcCC
Q psy5228 53 ASDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRD 92 (114)
Q Consensus 53 ~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~ 92 (114)
.+.++.+.+.+..+-..+.+++++..|++.+.+.+.+...
T Consensus 136 r~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~ 175 (320)
T PTZ00273 136 MELMETHYRDMQALALVLLRALALAIGLREDFFDSKFMEP 175 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhCCC
Confidence 4578889999999999999999999999999888876543
No 204
>cd02778 MopB_CT_Thiosulfate-R-like The MopB_CT_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Also included in this CD is the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), which has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. The MopB_CT_Thiosulfate-R-like CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=32.07 E-value=32 Score=22.12 Aligned_cols=17 Identities=12% Similarity=0.184 Sum_probs=14.9
Q ss_pred CceecHHHHHHcCccee
Q psy5228 92 DNFMSAKMAMEYCLIDK 108 (114)
Q Consensus 92 ~~~lta~eA~~~GliD~ 108 (114)
-.||+|+.|.++||-|.
T Consensus 31 ~v~i~p~dA~~~gi~~G 47 (123)
T cd02778 31 TLWINPETAARLGIKDG 47 (123)
T ss_pred eEEECHHHHHHcCCCCC
Confidence 47899999999999863
No 205
>KOG0143|consensus
Probab=32.01 E-value=1.6e+02 Score=22.81 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcC
Q psy5228 53 ASDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDR 91 (114)
Q Consensus 53 ~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~ 91 (114)
.+.+.++++++.++.+.+.+++++..|+..+.+.+.+..
T Consensus 134 re~~~eY~~~~~~L~~~l~~~l~eslgl~~~~~~~~~~~ 172 (322)
T KOG0143|consen 134 RETMEEYAKEVMELSEKLLRLLSESLGLEPEYLEKLFGE 172 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHhhCC
Confidence 356889999999999999999999999887777777766
No 206
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=31.67 E-value=53 Score=16.51 Aligned_cols=19 Identities=11% Similarity=0.195 Sum_probs=15.4
Q ss_pred HHHHHHhCCCHHHHHhhhc
Q psy5228 72 EILSEKTGHSVKKISQDTD 90 (114)
Q Consensus 72 ~~ya~~tg~s~~~i~~~m~ 90 (114)
+.|.+.-|+|.+++.+-+.
T Consensus 8 NrYV~eh~ls~ee~~~RL~ 26 (28)
T PF12368_consen 8 NRYVKEHGLSEEEVAERLA 26 (28)
T ss_pred hhhHHhcCCCHHHHHHHHH
Confidence 5788899999999887653
No 207
>PF12668 DUF3791: Protein of unknown function (DUF3791); InterPro: IPR024269 This entry represents proteins of unknown function.
Probab=31.65 E-value=49 Score=19.18 Aligned_cols=23 Identities=17% Similarity=-0.036 Sum_probs=19.3
Q ss_pred HHHHHHHHHhCCCHHHHHhhhcC
Q psy5228 69 RLNEILSEKTGHSVKKISQDTDR 91 (114)
Q Consensus 69 ~~~~~ya~~tg~s~~~i~~~m~~ 91 (114)
.+++.||++-|+|.+++.+.+.+
T Consensus 6 ~~Ie~~A~~~~~s~~ea~~~~~~ 28 (62)
T PF12668_consen 6 FCIEEFAKKLNISGEEAYNYFKR 28 (62)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHH
Confidence 46788999999999999888754
No 208
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=31.50 E-value=86 Score=16.70 Aligned_cols=19 Identities=42% Similarity=0.372 Sum_probs=13.8
Q ss_pred HHHHHHHhCCCHHHHHhhh
Q psy5228 71 NEILSEKTGHSVKKISQDT 89 (114)
Q Consensus 71 ~~~ya~~tg~s~~~i~~~m 89 (114)
...+++.||+|..+|....
T Consensus 16 k~~L~~~tgls~~Qi~~WF 34 (40)
T PF05920_consen 16 KEELAKQTGLSRKQISNWF 34 (40)
T ss_dssp HHHHHHHHTS-HHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHH
Confidence 3456888999999998753
No 209
>cd02777 MopB_CT_DMSOR-like The MopB_CT_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB hom
Probab=31.35 E-value=33 Score=22.39 Aligned_cols=16 Identities=13% Similarity=0.056 Sum_probs=14.7
Q ss_pred CceecHHHHHHcCcce
Q psy5228 92 DNFMSAKMAMEYCLID 107 (114)
Q Consensus 92 ~~~lta~eA~~~GliD 107 (114)
..|++++.|.++||-|
T Consensus 35 ~v~i~p~dA~~lgi~~ 50 (127)
T cd02777 35 PVWINPLDAAARGIKD 50 (127)
T ss_pred eEEECHHHHHHcCCCC
Confidence 4899999999999996
No 210
>cd02781 MopB_CT_Acetylene-hydratase The MopB_CT_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=31.33 E-value=32 Score=22.36 Aligned_cols=16 Identities=13% Similarity=0.102 Sum_probs=14.6
Q ss_pred CceecHHHHHHcCcce
Q psy5228 92 DNFMSAKMAMEYCLID 107 (114)
Q Consensus 92 ~~~lta~eA~~~GliD 107 (114)
-.||+|+.|.++||-|
T Consensus 34 ~v~inp~dA~~~gi~~ 49 (130)
T cd02781 34 VAEINPETAAKLGIAD 49 (130)
T ss_pred EEEECHHHHHHcCCCC
Confidence 3899999999999986
No 211
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=30.85 E-value=1.7e+02 Score=22.89 Aligned_cols=40 Identities=20% Similarity=0.156 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcCC
Q psy5228 53 ASDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRD 92 (114)
Q Consensus 53 ~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~ 92 (114)
.+.+..+.+++.++-..+.+++++..|++.+.+.+.+..+
T Consensus 156 r~~~~~y~~~~~~l~~~il~~la~~Lgl~~~~f~~~~~~~ 195 (348)
T PLN02912 156 REVTAEYATSVRALVLTLLEAISESLGLEKDRVSNTLGKH 195 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCc
Confidence 3456778889999999999999999999988888766543
No 212
>cd02779 MopB_CT_Arsenite-Ox This CD contains the molybdopterin_binding C-terminal (MopB_CT) region of Arsenite oxidase (Arsenite-Ox) and related proteins. Arsenite oxidase oxidizes arsenite to the less toxic arsenate; it transfers the electrons obtained from the oxidation of arsenite towards the soluble periplasmic electron carriers cytochrome c and/or amicyanin.
Probab=30.56 E-value=35 Score=21.92 Aligned_cols=25 Identities=12% Similarity=-0.023 Sum_probs=18.0
Q ss_pred HHHhhhcCC-ceecHHHHHHcCccee
Q psy5228 84 KISQDTDRD-NFMSAKMAMEYCLIDK 108 (114)
Q Consensus 84 ~i~~~m~~~-~~lta~eA~~~GliD~ 108 (114)
.+.+.+... .+|+++.|.++||-|.
T Consensus 25 ~l~~~~~~~~v~in~~dA~~lgi~~G 50 (115)
T cd02779 25 EIAERVPLPYIEVNPEDAKREGLKNG 50 (115)
T ss_pred HHHhhCCCCEEEECHHHHHHcCCCCC
Confidence 344444333 7899999999999873
No 213
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=30.49 E-value=82 Score=23.89 Aligned_cols=29 Identities=17% Similarity=0.456 Sum_probs=19.5
Q ss_pred CHHHHHhhhcCCce---------ecHHHHH----HcCcceeec
Q psy5228 81 SVKKISQDTDRDNF---------MSAKMAM----EYCLIDKIL 110 (114)
Q Consensus 81 s~~~i~~~m~~~~~---------lta~eA~----~~GliD~Ii 110 (114)
+.|.+...++++.| ||++||+ +|| .++++
T Consensus 166 N~etv~~vld~e~~vGlTvqPgKlt~~eAveIV~ey~-~~r~i 207 (254)
T COG1099 166 NEETVDEVLDEEFYVGLTVQPGKLTVEEAVEIVREYG-AERII 207 (254)
T ss_pred cHHHHHHHHhccceEEEEecCCcCCHHHHHHHHHHhC-cceEE
Confidence 45666667777766 5889995 577 55554
No 214
>PLN02216 protein SRG1
Probab=30.33 E-value=1.7e+02 Score=23.03 Aligned_cols=39 Identities=10% Similarity=0.086 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcC
Q psy5228 53 ASDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDR 91 (114)
Q Consensus 53 ~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~ 91 (114)
...+..+.+++.++-..+.+++++..|++.+.+.+....
T Consensus 168 r~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~ 206 (357)
T PLN02216 168 RDTLETYSAEVKSIAKILFAKMASALEIKPEEMEKLFDD 206 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcc
Confidence 456778899999999999999999999999988887754
No 215
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=30.30 E-value=1.6e+02 Score=23.16 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcCC
Q psy5228 53 ASDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRD 92 (114)
Q Consensus 53 ~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~ 92 (114)
...+..+.+++.++...+.+++++..|++.+.+.+.+...
T Consensus 154 r~~~~~y~~~~~~L~~~ll~~la~~Lgl~~~~f~~~~~~~ 193 (358)
T PLN02515 154 RAVTEEYSEKLMGLACKLLEVLSEAMGLEKEALTKACVDM 193 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHhhcCc
Confidence 4567888999999999999999999999998888776544
No 216
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=30.09 E-value=1.7e+02 Score=19.48 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=13.7
Q ss_pred CHHHHHhhhcCCceecHHHHHHc
Q psy5228 81 SVKKISQDTDRDNFMSAKMAMEY 103 (114)
Q Consensus 81 s~~~i~~~m~~~~~lta~eA~~~ 103 (114)
+..+|.+.+. +--+|++||++.
T Consensus 90 ~~~~IL~~L~-~GeIs~eeA~~~ 111 (113)
T PF09862_consen 90 ERKEILDKLE-KGEISVEEALEI 111 (113)
T ss_pred hHHHHHHHHH-cCCCCHHHHHHH
Confidence 3445555555 445888988763
No 217
>PF08383 Maf_N: Maf N-terminal region; InterPro: IPR013592 This region is found in various leucine zipper transcription factors of the Maf family. These are implicated in the regulation of insulin gene expression [], in erythroid differentiation [], and in differentiation of the neuroretina [].
Probab=30.00 E-value=30 Score=18.33 Aligned_cols=15 Identities=13% Similarity=0.297 Sum_probs=10.2
Q ss_pred hcCCce-ecHHHHHHc
Q psy5228 89 TDRDNF-MSAKMAMEY 103 (114)
Q Consensus 89 m~~~~~-lta~eA~~~ 103 (114)
|.-+.. |||++|+|.
T Consensus 16 ~~pe~l~LtpEDAvEa 31 (35)
T PF08383_consen 16 MNPEALGLTPEDAVEA 31 (35)
T ss_pred cChhhcCCCHHHHHHH
Confidence 333444 899999885
No 218
>PLN02904 oxidoreductase
Probab=29.43 E-value=1.9e+02 Score=22.70 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcCC
Q psy5228 53 ASDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRD 92 (114)
Q Consensus 53 ~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~ 92 (114)
...+..+.+.+.++...+.+++++..|++.+.+.+.+...
T Consensus 167 r~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~ 206 (357)
T PLN02904 167 KEKVGKYAEATHVLHKQLIEAISESLGLEKNYLQEEIEEG 206 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCc
Confidence 4567788899999999999999999999998888776554
No 219
>cd02790 MopB_CT_Formate-Dh_H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. This CD (MopB_CT_Formate-Dh_H) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=28.98 E-value=39 Score=21.35 Aligned_cols=16 Identities=13% Similarity=-0.056 Sum_probs=14.5
Q ss_pred CceecHHHHHHcCcce
Q psy5228 92 DNFMSAKMAMEYCLID 107 (114)
Q Consensus 92 ~~~lta~eA~~~GliD 107 (114)
..|++++.|.++||-|
T Consensus 36 ~v~in~~dA~~lgi~~ 51 (116)
T cd02790 36 YVEINPEDAKRLGIED 51 (116)
T ss_pred EEEECHHHHHHcCCCC
Confidence 3799999999999986
No 220
>PRK06424 transcription factor; Provisional
Probab=28.87 E-value=1.5e+02 Score=20.38 Aligned_cols=30 Identities=20% Similarity=0.037 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCHHHHHhhhcCCceecHHHH
Q psy5228 71 NEILSEKTGHSVKKISQDTDRDNFMSAKMA 100 (114)
Q Consensus 71 ~~~ya~~tg~s~~~i~~~m~~~~~lta~eA 100 (114)
..-+|+++|.+...|.++...+.-.+.+.+
T Consensus 100 Q~eLA~~iGvs~stIskiE~G~~~Ps~~~l 129 (144)
T PRK06424 100 QADLAAKIFERKNVIASIERGDLLPDIKTA 129 (144)
T ss_pred HHHHHHHhCCCHHHHHHHHCCCCCCCHHHH
Confidence 445677777777777777766666665544
No 221
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=28.75 E-value=1.7e+02 Score=23.06 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcCC
Q psy5228 53 ASDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRD 92 (114)
Q Consensus 53 ~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~ 92 (114)
...+..+.+++.++-..+.+++++..|++.+.+.+.+...
T Consensus 170 r~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~ 209 (361)
T PLN02758 170 SETLEVYSREIRELCQRLLKYIAMTLGLKEDRFEEMFGEA 209 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhHHHhcCc
Confidence 3567788889999999999999999999998888776543
No 222
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.64 E-value=1.6e+02 Score=19.78 Aligned_cols=49 Identities=6% Similarity=0.125 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHhCCCHHHHHhhhcCCce-ecHHHHH
Q psy5228 53 ASDIEIQAREILY---LRQRLNEILSEKTGHSVKKISQDTDRDNF-MSAKMAM 101 (114)
Q Consensus 53 ~~~l~~~~~~l~~---~~~~~~~~ya~~tg~s~~~i~~~m~~~~~-lta~eA~ 101 (114)
+...++-.++|.. +.+.++.-++.-+-.|.++++..+..+.+ +|++++-
T Consensus 50 pe~a~e~veEL~~i~~~~e~~avkIadI~P~t~~ElRsIla~e~~~~s~E~l~ 102 (114)
T COG1460 50 PEKARELVEELLSIVKMSEKIAVKIADIMPRTPDELRSILAKERVMLSDEELD 102 (114)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHhCCCCHHHHHHHHHHccCCCCHHHHH
Confidence 4445555555544 35677777888899999999999988777 4666553
No 223
>cd02783 MopB_CT_2 The MopB_CT_2 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=28.61 E-value=38 Score=23.29 Aligned_cols=16 Identities=31% Similarity=0.299 Sum_probs=14.7
Q ss_pred CceecHHHHHHcCcce
Q psy5228 92 DNFMSAKMAMEYCLID 107 (114)
Q Consensus 92 ~~~lta~eA~~~GliD 107 (114)
..||+|+.|.++||.|
T Consensus 33 ~v~inp~dA~~~GI~d 48 (156)
T cd02783 33 YLYMHPKTAKELGIKD 48 (156)
T ss_pred EEEECHHHHHHcCCCC
Confidence 4799999999999988
No 224
>cd00093 HTH_XRE Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.
Probab=28.49 E-value=89 Score=15.71 Aligned_cols=32 Identities=28% Similarity=0.180 Sum_probs=24.0
Q ss_pred HHHHHHHhCCCHHHHHhhhcCCceecHHHHHH
Q psy5228 71 NEILSEKTGHSVKKISQDTDRDNFMSAKMAME 102 (114)
Q Consensus 71 ~~~ya~~tg~s~~~i~~~m~~~~~lta~eA~~ 102 (114)
..-+++.+|.+...+.+++....-.+...+..
T Consensus 15 ~~~~a~~~~~~~~~v~~~~~g~~~~~~~~~~~ 46 (58)
T cd00093 15 QEELAEKLGVSRSTISRIENGKRNPSLETLEK 46 (58)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHH
Confidence 45678888999999988887766666666543
No 225
>TIGR02844 spore_III_D sporulation transcriptional regulator SpoIIID. Members of this protein are the transcriptional regulator SpoIIID, or stage III sporulation protein D. It is present in genomes if and only if the species is capable of endospore formation as occurs in the model species Bacillus subtilis. SpoIIID is a DNA binding protein that, in B. subtilis, downregulates many genes but also turns on ten genes.
Probab=28.47 E-value=1.3e+02 Score=18.74 Aligned_cols=41 Identities=10% Similarity=0.025 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcCC-ceecHH
Q psy5228 57 EIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRD-NFMSAK 98 (114)
Q Consensus 57 ~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~-~~lta~ 98 (114)
.+..+.|.. ...-..-.++.+|.|..-+..++... -.++++
T Consensus 9 ~~I~e~l~~-~~~ti~dvA~~~gvS~~TVsr~L~~~~~~Vs~~ 50 (80)
T TIGR02844 9 LEIGKYIVE-TKATVRETAKVFGVSKSTVHKDVTERLPEINPE 50 (80)
T ss_pred HHHHHHHHH-CCCCHHHHHHHhCCCHHHHHHHhcCCCCCCCHH
Confidence 345555666 55557778999999999999998765 567754
No 226
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=28.46 E-value=19 Score=24.22 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=2.9
Q ss_pred CCceecHHHHHHcCcceeec
Q psy5228 91 RDNFMSAKMAMEYCLIDKIL 110 (114)
Q Consensus 91 ~~~~lta~eA~~~GliD~Ii 110 (114)
+-.|+|+|||+-.||.--|+
T Consensus 17 ~~syitAEEAaGIGiL~VIL 36 (118)
T PF14991_consen 17 GHSYITAEEAAGIGILIVIL 36 (118)
T ss_dssp -----------SSS------
T ss_pred CcceeeHHHhccceeHHHHH
Confidence 56799999999999876665
No 227
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=28.38 E-value=43 Score=27.54 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=34.4
Q ss_pred CCCeEEEEehhhhhHHHHHHhcCCCCcEEecCC-ceeeeecCC
Q psy5228 5 KPNVSTLCIGLAASMGAFLLASGTKGKRFSLPN-SRIMIHQPL 46 (114)
Q Consensus 5 ~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~-s~~miH~p~ 46 (114)
..|+.+++.|.|.+.++++...++. .++.++ +.+.+.-|.
T Consensus 131 ~iP~I~vv~G~~~Gg~A~~~~~~d~--~i~~~~~a~i~l~GP~ 171 (493)
T PF01039_consen 131 GIPQISVVTGPCTGGGAYLAALSDF--VIMVKGTARIFLAGPR 171 (493)
T ss_dssp TS-EEEEEESEEEGGGGHHHHHSSE--EEEETTTCEEESSTHH
T ss_pred CCCeEEEEccccccchhhcccccCc--cccCccceEEEecccc
Confidence 5689999999999999999999987 899997 999888775
No 228
>smart00530 HTH_XRE Helix-turn-helix XRE-family like proteins.
Probab=28.37 E-value=88 Score=15.59 Aligned_cols=31 Identities=26% Similarity=0.164 Sum_probs=22.7
Q ss_pred HHHHHHHhCCCHHHHHhhhcCCceecHHHHH
Q psy5228 71 NEILSEKTGHSVKKISQDTDRDNFMSAKMAM 101 (114)
Q Consensus 71 ~~~ya~~tg~s~~~i~~~m~~~~~lta~eA~ 101 (114)
..-+++.+|.+...+.++.......+.+.+.
T Consensus 13 ~~~la~~~~i~~~~i~~~~~~~~~~~~~~~~ 43 (56)
T smart00530 13 QEELAEKLGVSRSTLSRIENGKRKPSLETLK 43 (56)
T ss_pred HHHHHHHhCCCHHHHHHHHCCCCCCCHHHHH
Confidence 4567888899999998887766555666553
No 229
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=28.33 E-value=2e+02 Score=21.62 Aligned_cols=39 Identities=18% Similarity=0.132 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcC
Q psy5228 53 ASDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDR 91 (114)
Q Consensus 53 ~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~ 91 (114)
.+.+.++.+.+.++...+.+.+++..|++.+.+.+....
T Consensus 75 ~~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~ 113 (262)
T PLN03001 75 REVVGEYGDCMKALAQKLLAFISESLGLPCSCIEDAVGD 113 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcC
Confidence 456778899999999999999999999998888776643
No 230
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=28.09 E-value=98 Score=25.77 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=33.4
Q ss_pred CCeEEEEehhhhhHHHHHHhcCCCCcEEecCC-ceeeeecCC
Q psy5228 6 PNVSTLCIGLAASMGAFLLASGTKGKRFSLPN-SRIMIHQPL 46 (114)
Q Consensus 6 ~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p~-s~~miH~p~ 46 (114)
.|..+++.|-|.+.++..+..+|. ++|.|+ +.+.+--|.
T Consensus 155 iP~Isvv~G~~~GG~a~~~al~D~--vim~~~~a~i~~aGP~ 194 (512)
T TIGR01117 155 VPQISAIMGPCAGGAVYSPALTDF--IYMVDNTSQMFITGPQ 194 (512)
T ss_pred CcEEEEEecCCCcHHHHHHHhcCc--eEEeccceEEEecChH
Confidence 589999999999999999999998 999996 467776664
No 231
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=27.54 E-value=37 Score=23.25 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.4
Q ss_pred HhCCCHHHHHhhhcCCceecHH
Q psy5228 77 KTGHSVKKISQDTDRDNFMSAK 98 (114)
Q Consensus 77 ~tg~s~~~i~~~m~~~~~lta~ 98 (114)
.-|+|.++|.+.+.+++-|+|+
T Consensus 102 ~eG~s~eei~~ki~~e~kl~pd 123 (131)
T PF08004_consen 102 SEGKSEEEIAEKISRETKLSPD 123 (131)
T ss_pred HcCCCHHHHHHHHHHhhcCCHH
Confidence 4689999999999999999886
No 232
>PLN02704 flavonol synthase
Probab=27.48 E-value=1.9e+02 Score=22.45 Aligned_cols=40 Identities=15% Similarity=0.087 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcCC
Q psy5228 53 ASDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRD 92 (114)
Q Consensus 53 ~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~ 92 (114)
.+.+.++.+.+.++...+.+++++..|++.+.+.+....+
T Consensus 156 r~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~ 195 (335)
T PLN02704 156 REVNEEYAKYLRGVADKLFKTLSLGLGLEEDELKEAVGGE 195 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCC
Confidence 4567888999999999999999999999999888776543
No 233
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=27.40 E-value=1.5e+02 Score=23.88 Aligned_cols=40 Identities=23% Similarity=0.300 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHhCCCHHHHHhhhcCC
Q psy5228 53 ASDIEIQAREILYLR------QRLNEILSEKTGHSVKKISQDTDRD 92 (114)
Q Consensus 53 ~~~l~~~~~~l~~~~------~~~~~~ya~~tg~s~~~i~~~m~~~ 92 (114)
+.|+....+.|..++ +.-.+.+|+.+|+|++++...|...
T Consensus 269 ~~D~~~L~~~l~~Yr~~FGLDd~SL~~lA~~~g~~~~~lk~~iksp 314 (376)
T PF05049_consen 269 ACDLEILEKCLNQYRSSFGLDDESLQKLAQDTGKPVEELKSIIKSP 314 (376)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SHHHHHHHHHHTTS-HHHHHCTSSGG
T ss_pred ccCHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCHHHHHHHHcCH
Confidence 556767777777665 3457889999999999999987543
No 234
>COG4008 Predicted metal-binding transcription factor [Transcription]
Probab=27.25 E-value=1.7e+02 Score=20.22 Aligned_cols=47 Identities=19% Similarity=0.281 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcCCceecHHHHHH
Q psy5228 54 SDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAME 102 (114)
Q Consensus 54 ~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~~~lta~eA~~ 102 (114)
+.+...-++.+.+++++.+-+..++-.+.++++-+.+.- .+++||.+
T Consensus 87 ~ri~mS~~EYM~lKkqLae~il~~s~~~~e~v~v~a~a~--v~~eeAr~ 133 (153)
T COG4008 87 NRINMSPEEYMELKKQLAEYILGHSEPPVEEVEVLADAF--VTPEEARE 133 (153)
T ss_pred HhcCCCHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHhc--CCHHHHHH
Confidence 344444567788888888877777777777777666554 78887754
No 235
>TIGR02684 dnstrm_HI1420 probable addiction module antidote protein. gene pairs, when found on the bacterial chromosome, are located often with prophage regions, but also both in integrated plasmid regions and in housekeeping gene regions. Analysis suggests that the gene pair may serve as an addiction module.
Probab=27.09 E-value=1.7e+02 Score=18.40 Aligned_cols=43 Identities=21% Similarity=0.163 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcCCcee
Q psy5228 51 GQASDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFM 95 (114)
Q Consensus 51 G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~~~l 95 (114)
|++..+....+++.+.+ .+. .+|+++|.+...|.++.....--
T Consensus 28 ~~~~~~~~~l~~~r~~~-glS-qLAe~~GIs~stLs~iE~g~~~P 70 (89)
T TIGR02684 28 GDPAYIAHALGYIARAR-GMT-QLARKTGLSRESLYKALSGKGNP 70 (89)
T ss_pred CCHHHHHHHHHHHHHHC-ChH-HHHHHHCCCHHHHHHHHcCCCCC
Confidence 56667777777776665 344 49999999999999998776533
No 236
>PRK06285 chorismate mutase; Provisional
Probab=26.95 E-value=95 Score=19.60 Aligned_cols=32 Identities=9% Similarity=0.206 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Q psy5228 53 ASDIEIQAREILYLRQRLNEILSEKTGHSVKK 84 (114)
Q Consensus 53 ~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~ 84 (114)
..+|...-.+++.+++.|++++++|.....+.
T Consensus 6 ~~~L~elR~~ID~ID~~iv~Ll~~R~~l~~~I 37 (96)
T PRK06285 6 EKRLNEIRKRIDEIDEQIIDLIAERTSLAKEI 37 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777788888899999999998765443
No 237
>PF06152 Phage_min_cap2: Phage minor capsid protein 2; InterPro: IPR009319 This entry is represented by Bacteriophage A118, Gp4, the minor capsid protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=26.92 E-value=72 Score=25.27 Aligned_cols=34 Identities=18% Similarity=0.282 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcC
Q psy5228 58 IQAREILYLRQRLNEILSEKTGHSVKKISQDTDR 91 (114)
Q Consensus 58 ~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~ 91 (114)
+.+.+|-.+++.+.+++++.+|.+.++|.++++.
T Consensus 51 ~kL~~lg~~~~~i~k~I~~~~~~s~~~i~~~i~~ 84 (361)
T PF06152_consen 51 EKLQELGMLNKEIKKIIAKYLGISEEEIRELIEN 84 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888899999999999999999999998865
No 238
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=26.88 E-value=1.1e+02 Score=16.32 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHhh
Q psy5228 64 LYLRQRLNEILSEKTGHSVKKISQD 88 (114)
Q Consensus 64 ~~~~~~~~~~ya~~tg~s~~~i~~~ 88 (114)
+.++..|.+.+.+....|..+|.+.
T Consensus 2 D~~D~~Il~~Lq~d~r~s~~~la~~ 26 (42)
T PF13404_consen 2 DELDRKILRLLQEDGRRSYAELAEE 26 (42)
T ss_dssp -HHHHHHHHHHHH-TTS-HHHHHHH
T ss_pred CHHHHHHHHHHHHcCCccHHHHHHH
Confidence 4455555555555555555555543
No 239
>TIGR01808 CM_M_hiGC-arch monofunctional chorismate mutase, high GC gram positive type. This model represents the monofunctional chorismate mutase from high GC gram-positive bacteria and archaea. Trusted annotations from Corynebacterium and Pyrococcus are aparrently the sole chorismate mutase enzymes in their respective genomes. This is coupled with the presence in those genomes of the enzymes of the chorismate pathways both up- and downstream of chorismate mutase.
Probab=26.84 E-value=67 Score=19.43 Aligned_cols=31 Identities=13% Similarity=0.022 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHhh
Q psy5228 58 IQAREILYLRQRLNEILSEKTGHSVKKISQD 88 (114)
Q Consensus 58 ~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~ 88 (114)
..-.+++.++..+++.+++|+....+.-.-.
T Consensus 4 ~lR~~ID~ID~~ii~LL~~R~~~~~~i~~~K 34 (74)
T TIGR01808 4 TLREEIDRLDAEILALVKRRAEISQAIGKAR 34 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445777888889999999987665544433
No 240
>TIGR02792 PCA_ligA protocatechuate 4,5-dioxygenase, alpha subunit. Protocatechuate (PCA) 4,5-dioxygenase is the first enzyme in the PCA 4,5-cleavage pathway that is an alternative to PCA 3,4-cleavage and PCA 2,3 cleavage pathways. PCA is an intermediate in the breakdown of lignin (hence the gene symbol ligA) and other compounds. Members of this family are the alpha chain of PCA 4,5-dioxygenase, or the equivalent domain of a fusion protein.
Probab=26.74 E-value=74 Score=21.42 Aligned_cols=20 Identities=15% Similarity=0.217 Sum_probs=17.3
Q ss_pred HHHHHHHHhCCCHHHHHhhh
Q psy5228 70 LNEILSEKTGHSVKKISQDT 89 (114)
Q Consensus 70 ~~~~ya~~tg~s~~~i~~~m 89 (114)
...+|+.-||.|.|+..++|
T Consensus 87 ~q~i~a~mtG~t~eef~~mm 106 (117)
T TIGR02792 87 FQQMAGSMTGMTEEEYRQMM 106 (117)
T ss_pred HHHHHHHhcCCCHHHHHHHH
Confidence 56789999999999998877
No 241
>cd02789 MopB_CT_FmdC-FwdD The MopB_FmdC-FwdD CD includes the C-terminus of subunit C of molybdenum formylmethanofuran dehydrogenase (FmdC) and subunit D of tungsten formylmethanofuran dehydrogenase (FwdD), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding superfamily of proteins. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=26.33 E-value=46 Score=21.27 Aligned_cols=15 Identities=0% Similarity=-0.312 Sum_probs=14.0
Q ss_pred ceecHHHHHHcCcce
Q psy5228 93 NFMSAKMAMEYCLID 107 (114)
Q Consensus 93 ~~lta~eA~~~GliD 107 (114)
.+++|+.|.++||-|
T Consensus 33 v~i~p~dA~~lgi~~ 47 (106)
T cd02789 33 CEINPEDYKLLGKPE 47 (106)
T ss_pred EEECHHHHHHcCCCC
Confidence 789999999999995
No 242
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=26.17 E-value=1.4e+02 Score=22.12 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=15.3
Q ss_pred HHHHHHhcCCCCcE-EecCCceeeeecCC
Q psy5228 19 MGAFLLASGTKGKR-FSLPNSRIMIHQPL 46 (114)
Q Consensus 19 ~as~i~~ag~~~~R-~~~p~s~~miH~p~ 46 (114)
+-.||+.++-+--| .-.+|..+|||...
T Consensus 7 i~~Fll~~Air~~rg~~~~~~SMLIH~S~ 35 (239)
T PF10593_consen 7 IRWFLLACAIRRLRGQGNKHNSMLIHTSR 35 (239)
T ss_pred HHHHHHHHHHHHHhCCCCCCceeEEECcc
Confidence 33455554443112 12367899999875
No 243
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=26.11 E-value=2.3e+02 Score=22.31 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcCC
Q psy5228 53 ASDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRD 92 (114)
Q Consensus 53 ~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~ 92 (114)
...+..+.+.+.++-..+.+++++..|++.+.+.+.+..+
T Consensus 169 r~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~f~~~~~~~ 208 (362)
T PLN02393 169 RELIEEYGEEVVKLCGRLMKVLSVNLGLEEDRLQNAFGGE 208 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCC
Confidence 3567788889999999999999999999999888877543
No 244
>PRK09239 chorismate mutase; Provisional
Probab=25.96 E-value=1.6e+02 Score=19.06 Aligned_cols=36 Identities=11% Similarity=0.077 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhh
Q psy5228 53 ASDIEIQAREILYLRQRLNEILSEKTGHSVKKISQD 88 (114)
Q Consensus 53 ~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~ 88 (114)
..+|...-.+++.+++.|++++++|.....+.-.-.
T Consensus 9 ~~~L~~lR~~ID~ID~eIv~LLa~R~~l~~~Ia~~K 44 (104)
T PRK09239 9 PAELAALRQSIDNIDAALIHMLAERFKCTQAVGVLK 44 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677888888999999999988655444433
No 245
>PRK13378 protocatechuate 4,5-dioxygenase subunit alpha; Provisional
Probab=25.95 E-value=79 Score=21.29 Aligned_cols=20 Identities=15% Similarity=0.338 Sum_probs=16.6
Q ss_pred HHHHHHHHhCCCHHHHHhhh
Q psy5228 70 LNEILSEKTGHSVKKISQDT 89 (114)
Q Consensus 70 ~~~~ya~~tg~s~~~i~~~m 89 (114)
...+|+.-||.|.|+..++|
T Consensus 93 ~q~i~a~mtG~t~eef~~mm 112 (117)
T PRK13378 93 MQDIGAQQTGMTKEEFKAKL 112 (117)
T ss_pred HHHHHHHhcCCCHHHHHHHH
Confidence 46788888999999988876
No 246
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=25.86 E-value=76 Score=21.82 Aligned_cols=42 Identities=17% Similarity=0.051 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHhCCCHHHHHhhhcCCcee
Q psy5228 54 SDIEIQAREILYLRQ--RLNEILSEKTGHSVKKISQDTDRDNFM 95 (114)
Q Consensus 54 ~~l~~~~~~l~~~~~--~~~~~ya~~tg~s~~~i~~~m~~~~~l 95 (114)
.++++..+.|..... .-+.-.++.||.|.+.|..++......
T Consensus 30 ~~f~kV~~yLr~~p~~~ati~eV~e~tgVs~~~I~~~IreGRL~ 73 (137)
T TIGR03826 30 REFEKVYKFLRKHENRQATVSEIVEETGVSEKLILKFIREGRLQ 73 (137)
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHCcCHHHHHHHHHcCCee
Confidence 455555666665544 456778999999999999999877654
No 247
>PHA01971 hypothetical protein
Probab=25.83 E-value=33 Score=23.31 Aligned_cols=22 Identities=9% Similarity=0.188 Sum_probs=20.0
Q ss_pred CCHHHHHhhhcCCceecHHHHH
Q psy5228 80 HSVKKISQDTDRDNFMSAKMAM 101 (114)
Q Consensus 80 ~s~~~i~~~m~~~~~lta~eA~ 101 (114)
.|+++|+..+.++.||++.+.+
T Consensus 20 vT~~~Ie~~I~~e~Yfta~~gv 41 (123)
T PHA01971 20 ITPQHIESIIASEHYFTAADGV 41 (123)
T ss_pred CCHHHHHHHhhheeeeeccccc
Confidence 6999999999999999988754
No 248
>PF06322 Phage_NinH: Phage NinH protein; InterPro: IPR010454 This entry is represented by Bacteriophage 933W, NinH. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=25.56 E-value=77 Score=19.00 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=18.7
Q ss_pred cCCCCcEEecCCceeeeecCCcc
Q psy5228 26 SGTKGKRFSLPNSRIMIHQPLGG 48 (114)
Q Consensus 26 ag~~~~R~~~p~s~~miH~p~~~ 48 (114)
.-.+++|.+--|..+|.|+-|.+
T Consensus 38 ~D~~a~~HaIvNgvLMvhrG~~~ 60 (64)
T PF06322_consen 38 RDKDAKRHAIVNGVLMVHRGWSG 60 (64)
T ss_pred cccccceEEEEcCEEEEEeCCCC
Confidence 34457789999999999998865
No 249
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=25.55 E-value=2.5e+02 Score=21.82 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcC
Q psy5228 53 ASDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDR 91 (114)
Q Consensus 53 ~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~ 91 (114)
...+.++.+.+.++...+.+++++..|++.+.+.+....
T Consensus 152 r~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~ 190 (345)
T PLN02750 152 RELCQEYARQVEKLAFKLLELISLSLGLPADRLNGYFKD 190 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcC
Confidence 346778888999999999999999999999888877654
No 250
>TIGR00987 himA integration host factor, alpha subunit. This protein forms a site-specific DNA-binding heterodimer with the integration host factor beta subunit. It is closely related to the DNA-binding protein HU.
Probab=25.45 E-value=99 Score=19.35 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHhhhc
Q psy5228 67 RQRLNEILSEKTGHSVKKISQDTD 90 (114)
Q Consensus 67 ~~~~~~~ya~~tg~s~~~i~~~m~ 90 (114)
.+.+.+.++++++.|..++...++
T Consensus 4 k~eli~~ia~~~~~s~~~v~~vv~ 27 (96)
T TIGR00987 4 KAEMSEYLFDELGLSKREAKELVE 27 (96)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHH
Confidence 345788889999999888887764
No 251
>PRK10753 transcriptional regulator HU subunit alpha; Provisional
Probab=25.35 E-value=1e+02 Score=19.23 Aligned_cols=24 Identities=13% Similarity=0.296 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHhhhc
Q psy5228 67 RQRLNEILSEKTGHSVKKISQDTD 90 (114)
Q Consensus 67 ~~~~~~~ya~~tg~s~~~i~~~m~ 90 (114)
+..+++.+++++++|..++...++
T Consensus 3 K~eli~~ia~~~~~s~~~~~~~v~ 26 (90)
T PRK10753 3 KTQLIDVIADKAELSKTQAKAALE 26 (90)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHH
Confidence 345778889999999888887664
No 252
>KOG2726|consensus
Probab=25.32 E-value=1.8e+02 Score=23.52 Aligned_cols=51 Identities=24% Similarity=0.250 Sum_probs=40.0
Q ss_pred cCCCCcEEecCCceeeeecCCcc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5228 26 SGTKGKRFSLPNSRIMIHQPLGG---AQGQASDIEIQAREILYLRQRLNEILSEKT 78 (114)
Q Consensus 26 ag~~~~R~~~p~s~~miH~p~~~---~~G~~~~l~~~~~~l~~~~~~~~~~ya~~t 78 (114)
+|.. +--..++.-+.|-|.+- +.+..++.+..+..+.+++.++..+|.+.-
T Consensus 261 GGQh--vNktdsaVrl~HiPTGIvv~cq~eRSq~~Nr~~A~~~L~akL~~~~~~~~ 314 (386)
T KOG2726|consen 261 GGQH--VNKTDSAVRLTHIPTGIVVECQEERSQHKNRALALKRLRAKLAVIYREEK 314 (386)
T ss_pred Cccc--ccccccceEEEeecCceEEEeecHHhHHhhHHHHHHHHHHHHHHHHHhhh
Confidence 4554 55567889999999964 677788889999999999988888876543
No 253
>PRK15070 propanediol utilization phosphotransacylase; Provisional
Probab=25.17 E-value=40 Score=24.96 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=16.7
Q ss_pred cCCceecHHHHHHcCccee
Q psy5228 90 DRDNFMSAKMAMEYCLIDK 108 (114)
Q Consensus 90 ~~~~~lta~eA~~~GliD~ 108 (114)
.|...|||++|..||+-|.
T Consensus 140 ~RHIHm~p~dA~~~gvkdg 158 (211)
T PRK15070 140 KRHIHMSPEDAEKFGVKDG 158 (211)
T ss_pred ecccCCCHHHHHHhCCCCC
Confidence 5788899999999999884
No 254
>cd02793 MopB_CT_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO.This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=25.06 E-value=50 Score=21.70 Aligned_cols=17 Identities=12% Similarity=-0.054 Sum_probs=15.1
Q ss_pred CceecHHHHHHcCccee
Q psy5228 92 DNFMSAKMAMEYCLIDK 108 (114)
Q Consensus 92 ~~~lta~eA~~~GliD~ 108 (114)
..||+++.|.++||-|.
T Consensus 34 ~v~i~p~dA~~~gi~~G 50 (129)
T cd02793 34 PIRINPADAAARGIADG 50 (129)
T ss_pred EEEECHHHHHHcCCCCC
Confidence 48999999999999874
No 255
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=24.84 E-value=1e+02 Score=17.50 Aligned_cols=29 Identities=14% Similarity=0.149 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHhhh
Q psy5228 61 REILYLRQRLNEILSEKTGHSVKKISQDT 89 (114)
Q Consensus 61 ~~l~~~~~~~~~~ya~~tg~s~~~i~~~m 89 (114)
++..++-+.+.+.+++.+|.+.+.+.-.+
T Consensus 15 eqk~~l~~~it~~l~~~lg~p~~~v~V~i 43 (64)
T PRK01964 15 EKIKNLIREVTEAISATLDVPKERVRVIV 43 (64)
T ss_pred HHHHHHHHHHHHHHHHHhCcChhhEEEEE
Confidence 44566777889999999999999887554
No 256
>cd02784 MopB_CT_PHLH The MopB_CT_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding proteins. This CD is of the PHLH region homologous to the conserved molybdopterin-binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=24.47 E-value=51 Score=22.40 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=15.2
Q ss_pred CCceecHHHHHHcCcce
Q psy5228 91 RDNFMSAKMAMEYCLID 107 (114)
Q Consensus 91 ~~~~lta~eA~~~GliD 107 (114)
...|++|+.|.++||-|
T Consensus 38 ~~v~InP~dA~~lGI~d 54 (137)
T cd02784 38 NAALVSPRTAEALGLLQ 54 (137)
T ss_pred ceEEECHHHHHHcCCCC
Confidence 34899999999999988
No 257
>PF14048 MBD_C: C-terminal domain of methyl-CpG binding protein 2 and 3; PDB: 2L2L_B.
Probab=24.43 E-value=1.7e+02 Score=18.87 Aligned_cols=41 Identities=32% Similarity=0.327 Sum_probs=19.8
Q ss_pred ecCCceeeeecCCccC-CCCHHHHHHHHHHHHHHHHHHHHHH
Q psy5228 34 SLPNSRIMIHQPLGGA-QGQASDIEIQAREILYLRQRLNEIL 74 (114)
Q Consensus 34 ~~p~s~~miH~p~~~~-~G~~~~l~~~~~~l~~~~~~~~~~y 74 (114)
+.|+..+-.-||.+.. .=+..||+.+-+.+.+.|+++.+++
T Consensus 55 ~~P~~~~~~~QPLc~~~~VT~eDIr~QE~rVk~aR~RLaeAL 96 (96)
T PF14048_consen 55 KNPGVGLNPPQPLCKQFVVTEEDIRRQERRVKKARKRLAEAL 96 (96)
T ss_dssp --------------T-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccccCCCcccccCCccCHHHHHHHHHHHHHHHHHHHHHC
Confidence 3444444445666542 2456899999999999999988753
No 258
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=24.35 E-value=1.4e+02 Score=20.32 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=28.0
Q ss_pred HHHHhCCCHHHHHhhhcCCc---eecHHHHHHcCcceeecc
Q psy5228 74 LSEKTGHSVKKISQDTDRDN---FMSAKMAMEYCLIDKILK 111 (114)
Q Consensus 74 ya~~tg~s~~~i~~~m~~~~---~lta~eA~~~GliD~Ii~ 111 (114)
+..+.+.+.|+|.+.++++. +-+-+.=++.|||++.=.
T Consensus 37 L~~~~~~tvdelae~lnr~rStv~rsl~~L~~~GlV~Rek~ 77 (126)
T COG3355 37 LEENGPLTVDELAEILNRSRSTVYRSLQNLLEAGLVEREKV 77 (126)
T ss_pred HhhcCCcCHHHHHHHHCccHHHHHHHHHHHHHcCCeeeeee
Confidence 33678899999999998874 345555678899987643
No 259
>PF06684 AA_synth: Amino acid synthesis; InterPro: IPR009569 This family consists of several hypothetical bacterial proteins of around 180 residues in length. The function of this family is unknown.; PDB: 3BYQ_A 2QTP_A.
Probab=24.17 E-value=1.2e+02 Score=21.86 Aligned_cols=46 Identities=20% Similarity=0.178 Sum_probs=23.2
Q ss_pred ceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Q psy5228 38 SRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSEKTGHSVKKIS 86 (114)
Q Consensus 38 s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~ 86 (114)
+.--|+|||.+- ..+||....+....+-..+.+...+..|. .+.|+
T Consensus 28 ~aAVi~NP~AGr--~veDL~pl~~~~~~LG~~L~~r~~~alg~-~~~ie 73 (175)
T PF06684_consen 28 AAAVIKNPWAGR--YVEDLSPLMEIGPELGELLTRRLVAALGG-PEAIE 73 (175)
T ss_dssp EEEEEE-TTTTS----S--HHHHHHHHHHHHHHHHHHHHHHT--GGG--
T ss_pred EEEEEcCCCccc--chhhhHHHHHhhHHHHHHHHHHHHHHhCC-Cchhh
Confidence 356789999764 33355554555555555666666666665 44444
No 260
>PRK13377 protocatechuate 4,5-dioxygenase subunit alpha; Provisional
Probab=24.15 E-value=88 Score=21.42 Aligned_cols=20 Identities=15% Similarity=0.217 Sum_probs=17.6
Q ss_pred HHHHHHHHhCCCHHHHHhhh
Q psy5228 70 LNEILSEKTGHSVKKISQDT 89 (114)
Q Consensus 70 ~~~~ya~~tg~s~~~i~~~m 89 (114)
...+|+.-||.|.|+..++|
T Consensus 93 ~q~i~a~mtG~t~eef~~mm 112 (129)
T PRK13377 93 FQQMAGSMTGMTEEEYRQMM 112 (129)
T ss_pred HHHHHHHhcCCCHHHHHHHH
Confidence 57889999999999999887
No 261
>TIGR03879 near_KaiC_dom probable regulatory domain. This model describes a common domain shared by two different families of proteins, each of which occurs regularly next to its corresponding partner family, a probable regulatory with homology to KaiC. By implication, this protein family likely is also involved in sensory transduction and/or regulation.
Probab=24.15 E-value=1.6e+02 Score=18.04 Aligned_cols=33 Identities=12% Similarity=0.188 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhh
Q psy5228 57 EIQAREILYLRQRLNEILSEKTGHSVKKISQDT 89 (114)
Q Consensus 57 ~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m 89 (114)
.+...+|....+....++...-|.|..+|.+.|
T Consensus 10 ~~~l~~l~~~~r~af~L~R~~eGlS~kEIAe~L 42 (73)
T TIGR03879 10 AERLTWVDSLAEAAAALAREEAGKTASEIAEEL 42 (73)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 333344444444444444334555555555544
No 262
>COG2028 Uncharacterized conserved protein [Function unknown]
Probab=23.96 E-value=75 Score=21.73 Aligned_cols=20 Identities=5% Similarity=0.036 Sum_probs=11.3
Q ss_pred HHHHHHHHhCCCHHHHHhhh
Q psy5228 70 LNEILSEKTGHSVKKISQDT 89 (114)
Q Consensus 70 ~~~~ya~~tg~s~~~i~~~m 89 (114)
+.+-|-.+.=+|+|++.+.|
T Consensus 70 i~ekygd~lFLT~eElkkY~ 89 (145)
T COG2028 70 IIEKYGDRLFLTPEELKKYM 89 (145)
T ss_pred HHHHhCCeeecCHHHHHHHH
Confidence 33444444446777777666
No 263
>PRK10664 transcriptional regulator HU subunit beta; Provisional
Probab=23.93 E-value=1.1e+02 Score=19.09 Aligned_cols=23 Identities=13% Similarity=0.128 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhCCCHHHHHhhhc
Q psy5228 68 QRLNEILSEKTGHSVKKISQDTD 90 (114)
Q Consensus 68 ~~~~~~ya~~tg~s~~~i~~~m~ 90 (114)
..+++.+++++|+|..++...++
T Consensus 4 ~eli~~ia~~~~~s~~~~~~~v~ 26 (90)
T PRK10664 4 SQLIDKIAAGADISKAAAGRALD 26 (90)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHH
Confidence 45678888999999888877664
No 264
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=23.63 E-value=73 Score=22.13 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=20.2
Q ss_pred hCCCHHHHHhhhcCCceecHHHH
Q psy5228 78 TGHSVKKISQDTDRDNFMSAKMA 100 (114)
Q Consensus 78 tg~s~~~i~~~m~~~~~lta~eA 100 (114)
-|+|+++|.+...-+.-|||+|-
T Consensus 123 rgkSpeeir~tfni~ndfTpEEe 145 (158)
T COG5201 123 RGKSPEEIRETFNIENDFTPEEE 145 (158)
T ss_pred ccCCHHHHHHHhCCCCCCCHHHH
Confidence 46899999999988889999975
No 265
>TIGR01807 CM_P2 chorismate mutase domain of proteobacterial P-protein, clade 2. This model represents one of two separate clades of the chorismate mutase domain of the gamma and beta and epsilon proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain. It is also found in Aquifex aolicus.
Probab=23.53 E-value=79 Score=18.97 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCHHH
Q psy5228 60 AREILYLRQRLNEILSEKTGHSVKK 84 (114)
Q Consensus 60 ~~~l~~~~~~~~~~ya~~tg~s~~~ 84 (114)
-.+++.+++.+++.+++|.....+.
T Consensus 5 R~~ID~iD~~iv~Ll~~R~~~~~~i 29 (76)
T TIGR01807 5 RNKIDAIDDRILDLLSERATYAQAV 29 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777788888888888755444
No 266
>cd01392 HTH_LacI Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators. HTH-DNA binding domain of the LacI (lactose operon repressor) family of bacterial transcriptional regulators and their putative homologs found in plants. The LacI family has more than 500 members distributed among almost all bacterial species. The monomeric proteins of the LacI family contain common structural features that include a small DNA-binding domain with a helix-turn-helix motif in the N-terminus, a regulatory ligand-binding domain which exhibits the type I periplasmic binding protein fold in the C-terminus for oligomerization and for effector binding, and an approximately 18-amino acid linker connecting these two functional domains. In LacI-like transcriptional regulators, the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. When the C-terminal domain of the LacI family repre
Probab=23.41 E-value=1.3e+02 Score=15.94 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=19.7
Q ss_pred HHHHhCCCHHHHHhhhcCCceecHHH
Q psy5228 74 LSEKTGHSVKKISQDTDRDNFMSAKM 99 (114)
Q Consensus 74 ya~~tg~s~~~i~~~m~~~~~lta~e 99 (114)
+++++|.+...|..++......++..
T Consensus 3 lA~~~gvs~~tvs~~l~g~~~vs~~~ 28 (52)
T cd01392 3 IARAAGVSVATVSRVLNGKPRVSEET 28 (52)
T ss_pred HHHHHCcCHHHHHHHHcCCCCCCHHH
Confidence 67888999999999887765555443
No 267
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=23.12 E-value=1.4e+02 Score=20.59 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHhhhcC
Q psy5228 67 RQRLNEILSEKTGHSVKKISQDTDR 91 (114)
Q Consensus 67 ~~~~~~~ya~~tg~s~~~i~~~m~~ 91 (114)
...+++..++.||+|.+++.+...+
T Consensus 48 ~~~lv~a~a~~~g~~~~~~l~~fG~ 72 (171)
T PF07700_consen 48 TYKLVEAAAEVTGISVEELLEEFGE 72 (171)
T ss_dssp HHHHHHHHHHHHTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4467888899999999999987754
No 268
>cd07925 LigA_like_1 The A subunit of Uncharacterized proteins with similarity to Protocatechuate 4,5-dioxygenase (LigAB). The proteins of unknown function in this subfamily are similar to the A subunit of the Protocatechuate (PCA) 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. PCA 4,5-dioxygenase catalyzes the oxidization and subsequent ring-opening of PCA (or 3,4-dihydroxybenzoic acid), which is an intermediate in the breakdown of lignin and other compounds.
Probab=23.09 E-value=98 Score=20.47 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=16.9
Q ss_pred HHHHHHHHhCCCHHHHHhhhc
Q psy5228 70 LNEILSEKTGHSVKKISQDTD 90 (114)
Q Consensus 70 ~~~~ya~~tg~s~~~i~~~m~ 90 (114)
...+|+.-||.|.|+..+.|.
T Consensus 82 ~q~i~a~mtG~t~eef~~~~~ 102 (106)
T cd07925 82 MQDIGGLQTGMSTEEFKAMLV 102 (106)
T ss_pred HHHHHHHhcCCCHHHHHHHHH
Confidence 467888889999998887764
No 269
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=22.91 E-value=1.9e+02 Score=21.18 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHhCCCHHH
Q psy5228 63 ILYLRQRLNEILSEKTGHSVKK 84 (114)
Q Consensus 63 l~~~~~~~~~~ya~~tg~s~~~ 84 (114)
+.--...+.+++.+.||.|+.+
T Consensus 212 ~~~S~~~l~r~Fk~~~G~t~~~ 233 (287)
T TIGR02297 212 LGISESRLNDICRRFSALSPKR 233 (287)
T ss_pred HCCCHHHHHHHHHHHhCCCHHH
Confidence 3333444555555566665544
No 270
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=22.87 E-value=1.2e+02 Score=15.37 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=15.8
Q ss_pred CCCHHHHHhhhcCCceecHHHHHHc
Q psy5228 79 GHSVKKISQDTDRDNFMSAKMAMEY 103 (114)
Q Consensus 79 g~s~~~i~~~m~~~~~lta~eA~~~ 103 (114)
|-+.++..+.+....+ +.++|++|
T Consensus 13 Gf~~~~~~~AL~~~~~-nve~A~~~ 36 (37)
T PF00627_consen 13 GFSREQAREALRACNG-NVERAVDW 36 (37)
T ss_dssp TS-HHHHHHHHHHTTT-SHHHHHHH
T ss_pred CCCHHHHHHHHHHcCC-CHHHHHHh
Confidence 7777777777665555 77777664
No 271
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=22.83 E-value=1.4e+02 Score=17.36 Aligned_cols=35 Identities=14% Similarity=0.015 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhh
Q psy5228 55 DIEIQAREILYLRQRLNEILSEKTGHSVKKISQDT 89 (114)
Q Consensus 55 ~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m 89 (114)
-|+.+...-..+.+.=..-+.++|++|.++|+.+.
T Consensus 12 pL~~Yy~~h~~L~E~DL~~L~~kS~ms~qqVr~WF 46 (56)
T PF11569_consen 12 PLEDYYLKHKQLQEEDLDELCDKSRMSYQQVRDWF 46 (56)
T ss_dssp HHHHHHHHT----TTHHHHHHHHTT--HHHHHHHH
T ss_pred HHHHHHHHcCCccHhhHHHHHHHHCCCHHHHHHHH
Confidence 35555555555555557778889999999988754
No 272
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=22.64 E-value=1.7e+02 Score=16.82 Aligned_cols=36 Identities=19% Similarity=0.116 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhh
Q psy5228 53 ASDIEIQAREILYLRQRLNEILSEKTGHSVKKISQD 88 (114)
Q Consensus 53 ~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~ 88 (114)
++-|....+.++.--..+.+-+.+..|.|.+++.++
T Consensus 28 ~e~l~~~l~~i~~~yGs~e~Yl~~~lgl~~~~i~~L 63 (68)
T PF13348_consen 28 PEYLEAALDAIDERYGSVENYLREELGLSEEDIERL 63 (68)
T ss_dssp HHHHHHHHHHHHHHHSSHHHHHHHT-T--HHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHcCCCCHHHHHHH
Confidence 445555555565555555555667789999998875
No 273
>PF10410 DnaB_bind: DnaB-helicase binding domain of primase; InterPro: IPR019475 This entry represents the C-terminal region three-helical domain of DNA primase []. Primases synthesise short RNA strands on single-stranded DNA templates, thereby generating the hybrid duplexes required for the initiation of synthesis by DNA polymerases. Primases are recruited to single-stranded DNA by helicases - this domain binds DnaB-helicase []. It is associated with the Toprim domain IPR006171 from INTERPRO, which is the central catalytic core. ; GO: 0016779 nucleotidyltransferase activity; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=22.55 E-value=53 Score=18.22 Aligned_cols=18 Identities=28% Similarity=0.261 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhCCCHHH
Q psy5228 67 RQRLNEILSEKTGHSVKK 84 (114)
Q Consensus 67 ~~~~~~~ya~~tg~s~~~ 84 (114)
++.+.+-+++++|.+.+.
T Consensus 41 r~~y~~~la~~~~i~~~~ 58 (59)
T PF10410_consen 41 RELYIRELAERLGISEDA 58 (59)
T ss_dssp HHHHHHHHHHHCT-SSTT
T ss_pred HHHHHHHHHHHhCcCccc
Confidence 667788889999988764
No 274
>PLN02997 flavonol synthase
Probab=22.52 E-value=2.9e+02 Score=21.41 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhc
Q psy5228 53 ASDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTD 90 (114)
Q Consensus 53 ~~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~ 90 (114)
.+.+..+.+.+.++-..+.+++++..|++.+.+.+...
T Consensus 140 r~~~~~y~~~~~~l~~~ll~~ia~~Lgl~~~~f~~~~~ 177 (325)
T PLN02997 140 REVTEEYTKHMKRLTEKILGWLSEGLGLPRETFTQSIG 177 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhc
Confidence 45677889999999999999999999999988887765
No 275
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=22.28 E-value=93 Score=18.54 Aligned_cols=19 Identities=37% Similarity=0.305 Sum_probs=13.6
Q ss_pred EehhhhhHHHHHHhcCCCC
Q psy5228 12 CIGLAASMGAFLLASGTKG 30 (114)
Q Consensus 12 ~~G~aaS~as~i~~ag~~~ 30 (114)
..|.+++++.-+|.+-+.|
T Consensus 6 l~Ga~~Ga~~glL~aP~sG 24 (74)
T PF12732_consen 6 LAGAAAGAAAGLLFAPKSG 24 (74)
T ss_pred HHHHHHHHHHHHHhCCCCc
Confidence 4577788888888776654
No 276
>cd07924 PCA_45_Doxase_A The A subunit of Protocatechuate 4,5-dioxygenase (LigAB) is the smaller, non-catalytic subunit. The A subunit is the non-catalytic subunit of Protocatechuate (PCA) 4,5-dioxygenase (LigAB), which is composed of A and B subunits that form a tetramer. PCA 4,5-dioxygenase catalyzes the oxidization and subsequent ring-opening of PCA (or 3,4-dihydroxybenzoic acid), which is an intermediate in the breakdown of lignin and other compounds. PCA 4,5-dioxygenase is one of the aromatic ring opening dioxygenases which play key roles in the degradation of aromatic compounds. As a member of the Class III extradiol dioxygenase family, LigAB uses a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon.
Probab=22.25 E-value=99 Score=20.95 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=17.3
Q ss_pred HHHHHHHHhCCCHHHHHhhh
Q psy5228 70 LNEILSEKTGHSVKKISQDT 89 (114)
Q Consensus 70 ~~~~ya~~tg~s~~~i~~~m 89 (114)
...+|+.-||.|.|+..++|
T Consensus 90 ~q~i~a~mtG~s~eef~~mm 109 (121)
T cd07924 90 FQQAAGSMTGMSMEEYRQMM 109 (121)
T ss_pred HHHHHHHhcCCCHHHHHHHH
Confidence 56789999999999998877
No 277
>PF12928 tRNA_int_end_N2: tRNA-splicing endonuclease subunit sen54 N-term; InterPro: IPR024336 tRNA-splicing endonucleases (3.1.27.9 from EC) catalyse the endonucleolytic cleavage of pre tRNA at the 5' and 3' splice sites to release the intron and produces two half tRNA molecules bearing 5' hydroxyl and 2', 3'-cyclic phosphate termini [, ]. The genes encoding these proteins are homologous in eukaryotes and archea. The eukaryotic tRNA-splicing endonucleases are heterotetrameric while the archaeal endonucleases can be split into homodimeric and homotetrameric subgroups. This entry represents the N-terminal domain of Sen54, a non-catalytic subunit of the tRNA-splicing endonuclease complex. Defects in human Sen54 are a cause of pontocerebellar hypoplasia type 4 [].
Probab=22.21 E-value=49 Score=19.92 Aligned_cols=12 Identities=8% Similarity=0.158 Sum_probs=9.8
Q ss_pred cCCceecHHHHH
Q psy5228 90 DRDNFMSAKMAM 101 (114)
Q Consensus 90 ~~~~~lta~eA~ 101 (114)
..-.||.|+||+
T Consensus 47 ~~~~~L~pEEal 58 (72)
T PF12928_consen 47 GGKLWLLPEEAL 58 (72)
T ss_pred CCeEEEeHHHHH
Confidence 456899999995
No 278
>smart00354 HTH_LACI helix_turn _helix lactose operon repressor.
Probab=21.96 E-value=1.8e+02 Score=16.94 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=20.9
Q ss_pred HHHHHhCCCHHHHHhhhcCCceecHHHH
Q psy5228 73 ILSEKTGHSVKKISQDTDRDNFMSAKMA 100 (114)
Q Consensus 73 ~ya~~tg~s~~~i~~~m~~~~~lta~eA 100 (114)
-+++++|.|...+...+....+.+++.+
T Consensus 5 ~iA~~~gvS~~TVSr~ln~~~~v~~~t~ 32 (70)
T smart00354 5 DVARLAGVSKATVSRVLNGNGRVSEETR 32 (70)
T ss_pred HHHHHHCCCHHHHHHHHCCCCCCCHHHH
Confidence 4677888888888888877777766543
No 279
>PF10078 DUF2316: Uncharacterized protein conserved in bacteria (DUF2316); InterPro: IPR018757 Members of this family of hypothetical bacterial proteins have no known function.
Probab=21.71 E-value=2.3e+02 Score=18.07 Aligned_cols=39 Identities=13% Similarity=0.071 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHHHHHHHHH---HHHHHHHhCCCHHHHHhhhc
Q psy5228 52 QASDIEIQAREILYLRQRL---NEILSEKTGHSVKKISQDTD 90 (114)
Q Consensus 52 ~~~~l~~~~~~l~~~~~~~---~~~ya~~tg~s~~~i~~~m~ 90 (114)
|..+.+...++|+...+.. .+..++..|.|.+++++.++
T Consensus 4 n~~Q~~~T~~ELq~nf~~~~ls~~~ia~dL~~s~~~le~vL~ 45 (89)
T PF10078_consen 4 NPEQRRATRQELQANFELSGLSLEQIAADLGTSPEHLEQVLN 45 (89)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 4566777788887665443 56677778888888887764
No 280
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=21.65 E-value=2.4e+02 Score=20.26 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHhhh
Q psy5228 67 RQRLNEILSEKTGHSVKKISQDT 89 (114)
Q Consensus 67 ~~~~~~~ya~~tg~s~~~i~~~m 89 (114)
++.+.++|.++ |.+.++.++..
T Consensus 82 ~~el~~iy~~~-Gl~~~~a~~i~ 103 (213)
T PF01988_consen 82 KEELVEIYRAK-GLSEEDAEEIA 103 (213)
T ss_pred HHHHHHHHHHC-CCCHHHHHHHH
Confidence 55678899988 88877766543
No 281
>COG1647 Esterase/lipase [General function prediction only]
Probab=21.56 E-value=22 Score=26.79 Aligned_cols=58 Identities=16% Similarity=0.249 Sum_probs=38.8
Q ss_pred CceeeeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCHHHHHhhhcCCceecHHHHH
Q psy5228 37 NSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNEILSE---KTGHSVKKISQDTDRDNFMSAKMAM 101 (114)
Q Consensus 37 ~s~~miH~p~~~~~G~~~~l~~~~~~l~~~~~~~~~~ya~---~tg~s~~~i~~~m~~~~~lta~eA~ 101 (114)
.+.++|| |+.|++.|++.-.++|++.. -..|+= .-|.+++++.+---+|+|=.+..+-
T Consensus 16 ~AVLllH----GFTGt~~Dvr~Lgr~L~e~G---yTv~aP~ypGHG~~~e~fl~t~~~DW~~~v~d~Y 76 (243)
T COG1647 16 RAVLLLH----GFTGTPRDVRMLGRYLNENG---YTVYAPRYPGHGTLPEDFLKTTPRDWWEDVEDGY 76 (243)
T ss_pred EEEEEEe----ccCCCcHHHHHHHHHHHHCC---ceEecCCCCCCCCCHHHHhcCCHHHHHHHHHHHH
Confidence 5678888 57899999988888877653 223332 2345677777777777776665553
No 282
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=21.56 E-value=1.3e+02 Score=16.66 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHhh
Q psy5228 61 REILYLRQRLNEILSEKTGHSVKKISQD 88 (114)
Q Consensus 61 ~~l~~~~~~~~~~ya~~tg~s~~~i~~~ 88 (114)
++..++-+.+.+.+++.+|.+.+.+.-.
T Consensus 15 eqk~~l~~~it~~l~~~~~~p~~~v~V~ 42 (61)
T PRK02220 15 EQLKALVKDVTAAVSKNTGAPAEHIHVI 42 (61)
T ss_pred HHHHHHHHHHHHHHHHHhCcChhhEEEE
Confidence 3455677788899999999998887644
No 283
>cd07921 PCA_45_Doxase_A_like Subunit A of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and similar enzymes. This subfamily includes the A subunit of protocatechuate (PCA) 4,5-dioxygenase (LigAB) and two subfamilies of unknown function. The A subunit is the smaller, non-catalytic subunit of LigAB. PCA 4,5-dioxygenase catalyzes the oxidization and subsequent ring-opening of PCA (or 3,4-dihydroxybenzoic acid), which is an intermediate in the breakdown of lignin and other compounds. PCA 4,5-dioxygenase is one of the aromatic ring opening dioxygenases which play key roles in the degradation of aromatic compounds. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit.
Probab=21.41 E-value=1e+02 Score=20.42 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCHHHHHhhhcCCc
Q psy5228 71 NEILSEKTGHSVKKISQDTDRDN 93 (114)
Q Consensus 71 ~~~ya~~tg~s~~~i~~~m~~~~ 93 (114)
.+.|.++-|+|.|+....+++|+
T Consensus 36 ~eAy~~~~gLTeEe~~AV~~rD~ 58 (106)
T cd07921 36 EEAYCDKFGLTEEQKQAVLDRDW 58 (106)
T ss_pred HHHHHHHcCCCHHHHHHHHhCCH
Confidence 56789999999999999998874
No 284
>cd07321 Extradiol_Dioxygenase_3A_like Subunit A of Class III extradiol dioxygenases. Extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. There are two major groups of dioxygenases according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents subunit A of c
Probab=21.28 E-value=1.1e+02 Score=18.70 Aligned_cols=23 Identities=17% Similarity=0.120 Sum_probs=19.5
Q ss_pred HHHHHHHhCCCHHHHHhhhcCCc
Q psy5228 71 NEILSEKTGHSVKKISQDTDRDN 93 (114)
Q Consensus 71 ~~~ya~~tg~s~~~i~~~m~~~~ 93 (114)
.+.|.+.-|+|.+|...++++|+
T Consensus 26 p~a~~~~~~Lt~eE~~al~~rD~ 48 (77)
T cd07321 26 PEAVLAEYGLTPEEKAALLARDV 48 (77)
T ss_pred HHHHHHHcCCCHHHHHHHHcCCH
Confidence 45677888999999999998874
No 285
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=21.19 E-value=1.5e+02 Score=16.46 Aligned_cols=29 Identities=10% Similarity=0.108 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHhhh
Q psy5228 61 REILYLRQRLNEILSEKTGHSVKKISQDT 89 (114)
Q Consensus 61 ~~l~~~~~~~~~~ya~~tg~s~~~i~~~m 89 (114)
++..++-+.+.+.+.+.+|.+.+.+.-.+
T Consensus 15 eqk~~l~~~it~~l~~~~~~p~~~v~V~i 43 (62)
T PRK00745 15 EQKRKLVEEITRVTVETLGCPPESVDIII 43 (62)
T ss_pred HHHHHHHHHHHHHHHHHcCCChhHEEEEE
Confidence 34566777889999999999998876543
No 286
>PF06078 DUF937: Bacterial protein of unknown function (DUF937); InterPro: IPR009282 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 1Z67_A.
Probab=21.18 E-value=2.3e+02 Score=18.83 Aligned_cols=31 Identities=19% Similarity=0.100 Sum_probs=21.6
Q ss_pred HHHHHHHH--HHHHHHHHHHhCCCHHHHHhhhc
Q psy5228 60 AREILYLR--QRLNEILSEKTGHSVKKISQDTD 90 (114)
Q Consensus 60 ~~~l~~~~--~~~~~~ya~~tg~s~~~i~~~m~ 90 (114)
.+.|.++- +.+.+.++++||.+.+.+.+.+.
T Consensus 92 ~~~l~~lfg~~~~~~~lA~~tGl~~~~~~~lL~ 124 (137)
T PF06078_consen 92 PEILNSLFGGDDVIQQLAQQTGLSPDSAQQLLA 124 (137)
T ss_dssp HHHHHHHH--HHHHHHHHHHHT--HHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 34444443 78899999999999999988763
No 287
>PRK11742 bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
Probab=21.10 E-value=4.3e+02 Score=22.42 Aligned_cols=52 Identities=17% Similarity=0.163 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcCCceecHHHHHHcCcce
Q psy5228 54 SDIEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLID 107 (114)
Q Consensus 54 ~~l~~~~~~l~~~~~~~~~~ya~~tg~s~~~i~~~m~~~~~lta~eA~~~GliD 107 (114)
..+....+.++.+.+.+.+....-+..+. +..-+..-=.++.++|+++|++=
T Consensus 351 ~~~~~i~~~l~~~~~~~~~~~~~~~~n~i--~~~R~~gvGvl~~~~A~~~g~~G 402 (575)
T PRK11742 351 GWDRLLREFLDWMPKRLDEYEKAALRNSI--LKGRTQGVAAYNAKEALEWGVTG 402 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCch--HHHhcCcEeecCHHHHHHhCCcc
Confidence 34455666677777776555554444332 55556666779999999999863
No 288
>PF08587 UBA_2: Ubiquitin associated domain (UBA) ; InterPro: IPR013896 This is a UBA (ubiquitin associated) protein []. Ubiquitin is involved in intracellular proteolysis. ; GO: 0004674 protein serine/threonine kinase activity; PDB: 3H4J_B.
Probab=21.10 E-value=39 Score=19.02 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhCCCHHHHHhhhcCC
Q psy5228 68 QRLNEILSEKTGHSVKKISQDTDRD 92 (114)
Q Consensus 68 ~~~~~~ya~~tg~s~~~i~~~m~~~ 92 (114)
+.++..++...|.++++|.+.+.++
T Consensus 3 e~vv~~Ls~tMGY~kdeI~eaL~~~ 27 (46)
T PF08587_consen 3 EDVVSKLSKTMGYDKDEIYEALESS 27 (46)
T ss_dssp HCCHHHHHCTT---HHHHHHHCCSS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHcC
Confidence 3456788889999999999988764
No 289
>PF12085 DUF3562: Protein of unknown function (DUF3562); InterPro: IPR021945 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 62 to 84 amino acids in length. This protein has two completely conserved residues (A and Y) that may be functionally important.
Probab=20.63 E-value=89 Score=18.89 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=18.2
Q ss_pred HHHHHHHHHhCCCHHHHHhhhcC
Q psy5228 69 RLNEILSEKTGHSVKKISQDTDR 91 (114)
Q Consensus 69 ~~~~~ya~~tg~s~~~i~~~m~~ 91 (114)
.+++-+|+.|+.|.+.+..+.+.
T Consensus 8 e~i~~iA~~t~~P~e~V~~my~d 30 (66)
T PF12085_consen 8 EVIRSIAEETGTPAETVRRMYDD 30 (66)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH
Confidence 45667899999999999887654
No 290
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=20.56 E-value=1.1e+02 Score=16.99 Aligned_cols=35 Identities=17% Similarity=0.186 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHhhh---cCCcee
Q psy5228 61 REILYLRQRLNEILSEKTGHSVKKISQDT---DRDNFM 95 (114)
Q Consensus 61 ~~l~~~~~~~~~~ya~~tg~s~~~i~~~m---~~~~~l 95 (114)
++..++-+.+.+.+.+.+|.+.+.+.-.. ..+.|.
T Consensus 14 e~K~~l~~~it~~~~~~lg~~~~~i~V~i~E~~~~~w~ 51 (60)
T PF01361_consen 14 EQKRELAEAITDAVVEVLGIPPERISVVIEEVPPENWG 51 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-GGGEEEEEEEE-CCCEE
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCeEEEEEEEEChhheE
Confidence 34556677788889999999988776443 455664
No 291
>PF06892 Phage_CP76: Phage regulatory protein CII (CP76); InterPro: IPR009679 This entry is represented by Bacteriophage 186, CII. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage regulatory protein CII (CP76) sequences which are thought to be DNA binding proteins which are involved in the establishment of lysogeny [].
Probab=20.55 E-value=1.7e+02 Score=20.48 Aligned_cols=32 Identities=9% Similarity=0.223 Sum_probs=26.6
Q ss_pred HHHHHHHhCCCHHHHHhhh--cCCceecHHHHHH
Q psy5228 71 NEILSEKTGHSVKKISQDT--DRDNFMSAKMAME 102 (114)
Q Consensus 71 ~~~ya~~tg~s~~~i~~~m--~~~~~lta~eA~~ 102 (114)
.+-+|++.|++...+.+.+ +.+..||..|++.
T Consensus 23 ~~~lA~~lGm~~~~LrNKLNP~q~H~Lt~~el~~ 56 (162)
T PF06892_consen 23 MAALAERLGMNPQTLRNKLNPEQPHKLTVDELIA 56 (162)
T ss_pred HHHHHHHhCCCHHHHHHHcCCCCCCCCCHHHHHH
Confidence 4677999999999999988 4467799999864
No 292
>TIGR01728 SsuA_fam ABC transporter, substrate-binding protein, aliphatic sulfonates family. Members of this family are substrate-binding periplasmic proteins of ABC transporters. This subfamily includes SsuA, a member of a transporter operon needed to obtain sulfur from aliphatic sulfonates. Related proteins outside the scope of this model include taurine (NH2-CH2-CH2-S03H) binding proteins, the probable sulfate ester binding protein AtsR, and the probable aromatic sulfonate binding protein AsfC. All these families make sulfur available when Cys and sulfate levels are low. Please note that phylogenetic analysis by neighbor-joining suggests that a number of sequences belonging to this family have been excluded because of scoring lower than taurine-binding proteins.
Probab=20.54 E-value=2.8e+02 Score=19.77 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHhhhcCCce
Q psy5228 65 YLRQRLNEILSEKTGHSVKKISQDTDRDNF 94 (114)
Q Consensus 65 ~~~~~~~~~ya~~tg~s~~~i~~~m~~~~~ 94 (114)
...+...+++++.++.+.+++...+....|
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (288)
T TIGR01728 216 ENPEESAKILAKELGLSQAVVEETVLNRRF 245 (288)
T ss_pred HCHHHHHHHHHHHhCCCHHHHHHHHhhccc
Confidence 334556778899999999988877655544
No 293
>PRK07075 isochorismate-pyruvate lyase; Reviewed
Probab=20.45 E-value=1.4e+02 Score=19.15 Aligned_cols=27 Identities=11% Similarity=0.060 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy5228 55 DIEIQAREILYLRQRLNEILSEKTGHS 81 (114)
Q Consensus 55 ~l~~~~~~l~~~~~~~~~~ya~~tg~s 81 (114)
.|...-.+++.++..|++++++|....
T Consensus 9 ~L~~lR~~ID~ID~~iv~LL~eR~~~~ 35 (101)
T PRK07075 9 GLDDIREAIDRLDRDIIAALGRRMQYV 35 (101)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556677888889999999988754
No 294
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=20.37 E-value=1.6e+02 Score=24.98 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=32.0
Q ss_pred CCCeEEEEehhhhhHHHHHHhcCCCCcEEecC-CceeeeecC
Q psy5228 5 KPNVSTLCIGLAASMGAFLLASGTKGKRFSLP-NSRIMIHQP 45 (114)
Q Consensus 5 ~~~V~t~~~G~aaS~as~i~~ag~~~~R~~~p-~s~~miH~p 45 (114)
..|..++++|-|++.++++...++. .+|.+ ++.+.+--|
T Consensus 205 ~VP~Isvv~G~~~gGgAy~~a~~D~--vim~~~~a~i~~aGP 244 (569)
T PLN02820 205 GIPQIALVLGSCTAGGAYVPAMADE--SVIVKGNGTIFLAGP 244 (569)
T ss_pred CCCEEEEEeCCCChHHHHHHHhCCc--eEEecCCcEEEecCH
Confidence 3699999999999999999888876 67765 687777766
No 295
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=20.34 E-value=77 Score=18.50 Aligned_cols=40 Identities=13% Similarity=0.078 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHhCCCHHHHHhhhcCC
Q psy5228 53 ASDIEIQAREILY----LRQRLNEILSEKTGHSVKKISQDTDRD 92 (114)
Q Consensus 53 ~~~l~~~~~~l~~----~~~~~~~~ya~~tg~s~~~i~~~m~~~ 92 (114)
...|+...+...- ......+-++..+|++...+.-++.+.
T Consensus 13 ~~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vvKVWfqN~ 56 (58)
T TIGR01565 13 KEKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVFKVWMHNN 56 (58)
T ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHeeeecccC
Confidence 3444444444443 455677788888888888887666543
No 296
>PF09832 DUF2059: Uncharacterized protein conserved in bacteria (DUF2059); InterPro: IPR018637 This entry contains proteins that have no known function. ; PDB: 2X3O_B 3OAO_A.
Probab=20.33 E-value=1.8e+02 Score=16.50 Aligned_cols=24 Identities=8% Similarity=0.099 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHhhh
Q psy5228 64 LYLRQRLNEILSEKTGHSVKKISQDT 89 (114)
Q Consensus 64 ~~~~~~~~~~ya~~tg~s~~~i~~~m 89 (114)
+++.+.+..+|+++. |.+++...+
T Consensus 3 ~~~~~~~~~~y~~~f--t~~El~~i~ 26 (64)
T PF09832_consen 3 EKMIDQMAPIYAEHF--TEEELDAIL 26 (64)
T ss_dssp HHHHHHHHHHHHHHS---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHC--CHHHHHHHH
Confidence 345666777777664 566665543
No 297
>KOG2870|consensus
Probab=20.15 E-value=1.9e+02 Score=23.31 Aligned_cols=17 Identities=18% Similarity=0.374 Sum_probs=13.7
Q ss_pred eecHHHHHHcCcceeec
Q psy5228 94 FMSAKMAMEYCLIDKIL 110 (114)
Q Consensus 94 ~lta~eA~~~GliD~Ii 110 (114)
..|++||++|||---++
T Consensus 266 iv~aeeAlnwGfSG~ml 282 (452)
T KOG2870|consen 266 IVTAEEALNWGFSGVML 282 (452)
T ss_pred eeeHHHhhccCCcceee
Confidence 47999999999975544
Done!