RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5228
(114 letters)
>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia
coli [TaxId: 562]}
Length = 183
Score = 153 bits (388), Expect = 1e-49
Identities = 74/113 (65%), Positives = 94/113 (83%)
Query: 1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
MQFIKP+VST+C+G AASMGAFLL +G KGKRF LPNSR+MIHQPLGG QGQA+DIEI A
Sbjct: 70 MQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHA 129
Query: 61 REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113
REIL ++ R+NE+++ TG S+++I +DT+RD F+SA A+EY L+D IL R
Sbjct: 130 REILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHR 182
>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo
sapiens), mitochondrial [TaxId: 9606]}
Length = 193
Score = 134 bits (339), Expect = 5e-42
Identities = 58/113 (51%), Positives = 79/113 (69%)
Query: 1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
MQ+I + T C+G AASMG+ LLA+GT G R SLPNSRIMIHQP GGA+GQA+DI IQA
Sbjct: 80 MQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQA 139
Query: 61 REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQR 113
EI+ L+++L I ++ T S++ I +RD +MS A E+ ++DK+L
Sbjct: 140 EEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVHP 192
>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 179
Score = 114 bits (287), Expect = 3e-34
Identities = 49/110 (44%), Positives = 78/110 (70%)
Query: 1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
M +++T +G+AASMG FLLA+GTKGKR++LP++RI++HQPLGG G A+DI IQA
Sbjct: 67 MVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQA 126
Query: 61 REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKIL 110
+ +++ + + +E TG +++I D+DRD + +A A+EY +D I+
Sbjct: 127 EQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHII 176
>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium
falciparum [TaxId: 5833]}
Length = 190
Score = 107 bits (269), Expect = 2e-31
Identities = 57/114 (50%), Positives = 79/114 (69%)
Query: 1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQA 60
+IK ++ T+ GL ASM + +LASG KGKR SLPN RIMIHQPLG A G DIEIQ
Sbjct: 71 FNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQT 130
Query: 61 REILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKILKQRK 114
+EILYL++ L LS T +V+ I +D+DRD +M+A A +Y +ID++++ +
Sbjct: 131 KEILYLKKLLYHYLSSFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVIETKL 184
>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 192
Score = 98.2 bits (244), Expect = 1e-27
Identities = 54/112 (48%), Positives = 77/112 (68%), Gaps = 2/112 (1%)
Query: 1 MQFIKPNVSTLCIGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQG--QASDIEI 58
M FIK +V T+ +G+AASMG + +SG KGKRF LPN+ MIHQP+GG G Q +D+ I
Sbjct: 78 MNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAI 137
Query: 59 QAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAKMAMEYCLIDKIL 110
+L R L +IL+E +G S++K+ D +RDN+MSA+ +EY ID+I+
Sbjct: 138 APEHLLKTRNTLEKILAENSGQSMEKVHADAERDNWMSAQETLEYGFIDEIM 189
>d1cbga_ c.1.8.4 (A:) Plant beta-glucosidase (myrosinase) {Creeping
white clover (Trifolium repens) [TaxId: 3899]}
Length = 490
Score = 28.6 bits (63), Expect = 0.14
Identities = 13/61 (21%), Positives = 19/61 (31%), Gaps = 10/61 (16%)
Query: 13 IGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNE 72
IG+ M RFS+ R++ P G G + I L N
Sbjct: 79 IGIMKDMNL-------DAYRFSISWPRVL---PKGKLSGGVNREGINYYNNLINEVLANG 128
Query: 73 I 73
+
Sbjct: 129 M 129
>d1sk4a_ d.118.1.1 (A:) Peptidoglycan recognition protein I-alpha
{Human (Homo sapiens) [TaxId: 9606]}
Length = 163
Score = 25.9 bits (56), Expect = 1.00
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 25 ASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREI 63
A T + +LP ++I G + ++D + R I
Sbjct: 11 ARETHCPKMNLPAKYVIIIHTAGTSCTVSTDCQTVVRNI 49
>d1e4mm_ c.1.8.4 (M:) Plant beta-glucosidase (myrosinase) {White
mustard (Sinapis alba) [TaxId: 3728]}
Length = 499
Score = 25.9 bits (56), Expect = 1.1
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 15/63 (23%)
Query: 13 IGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRQRLNE 72
I + + A G RFS+ SRI+ P G ++ I Y ++
Sbjct: 81 IDVLDELNA-------TGYRFSIAWSRII---PRGKRSRGVNEKGID-----YYHGLISG 125
Query: 73 ILS 75
++
Sbjct: 126 LIK 128
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans
[TaxId: 162425]}
Length = 329
Score = 25.8 bits (55), Expect = 1.3
Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 11/61 (18%)
Query: 28 TKGKRFSL-----PNSRIMIHQPLGGAQGQASDIE--IQAREILYLRQRLNEILSEKTGH 80
+R SL +I P + + + YL+ L ++ K G
Sbjct: 273 VNAERQSLPFFVNLGYDSVI-DPFDPREPNGKSDREPLSYGD--YLQNGLVSLI-NKNGQ 328
Query: 81 S 81
+
Sbjct: 329 T 329
>d1v02a_ c.1.8.4 (A:) Plant beta-glucosidase (myrosinase) {Sorghum
bicolor [TaxId: 4558]}
Length = 484
Score = 25.6 bits (55), Expect = 1.6
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 10/47 (21%)
Query: 13 IGLAASMGAFLLASGTKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQ 59
+ L MG RFS+ RI+ P G G ++ ++
Sbjct: 73 VRLLKEMGM-------DAYRFSISWPRIL---PKGTLAGGINEKRVE 109
>d1wmib1 a.137.13.1 (B:7-67) Hypothetical protein PHS014
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 61
Score = 23.6 bits (50), Expect = 2.8
Identities = 10/43 (23%), Positives = 27/43 (62%)
Query: 56 IEIQAREILYLRQRLNEILSEKTGHSVKKISQDTDRDNFMSAK 98
+EIQ E + + + +E ++E+ + ++++D D +N++ A+
Sbjct: 12 VEIQRLEAMLMPEERDEDITEEEIAELLELARDEDPENWIDAE 54
>d2af8a_ a.28.1.1 (A:) Actinorhodin polyketide synthase acyl carrier
protein, ACT ACP {Streptomyces coelicolor, A3(2) [TaxId:
1902]}
Length = 86
Score = 23.0 bits (49), Expect = 7.4
Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 66 LRQRLNEILSEKTGHSVKKISQDTD-RDNFMSAKMAMEYC 104
LR+ L E E G + D D + ME
Sbjct: 10 LRRALVECAGETDGTDLSGDFLDLRFEDIGYDSLALMETA 49
>d1f80d_ a.28.1.1 (D:) Acyl carrier protein {Bacillus subtilis
[TaxId: 1423]}
Length = 74
Score = 22.4 bits (48), Expect = 8.0
Identities = 4/30 (13%), Positives = 13/30 (43%)
Query: 68 QRLNEILSEKTGHSVKKISQDTDRDNFMSA 97
+R+ +I+ ++ G + + + A
Sbjct: 6 ERVTKIIVDRLGVDEADVKLEASFKEDLGA 35
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.134 0.371
Gapped
Lambda K H
0.267 0.0593 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 380,296
Number of extensions: 14787
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 17
Length of query: 114
Length of database: 2,407,596
Length adjustment: 72
Effective length of query: 42
Effective length of database: 1,419,036
Effective search space: 59599512
Effective search space used: 59599512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.2 bits)