BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5230
(258 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1H4Y0|FMT_METFK Methionyl-tRNA formyltransferase OS=Methylobacillus flagellatus
(strain KT / ATCC 51484 / DSM 6875) GN=fmt PE=3 SV=1
Length = 308
Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/306 (29%), Positives = 142/306 (46%), Gaps = 68/306 (22%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
MKII+AGT A L L S H + L+LT+PD +GRG+KL SPVK AL+H I ++
Sbjct: 1 MKIIYAGTPDFAVPALRALIQSSHEVSLVLTQPDRPAGRGLKLKPSPVKSLALEHGIPLL 60
Query: 61 QPISLKLNGKYHKIANETHKLLNKIEFDIMIVMGILP----------------------- 97
QP +LK +IA E L + ++I +L
Sbjct: 61 QPETLKDEAVQARIAAEHADALVVAAYGLIIPATVLSMPRYGCYNIHASLLPRWRGAAPI 120
Query: 98 --------EDTSLTLQNKLEKL--SKILIIDTIKKIEYDMT------------------- 128
++T +T+ + L +++ T+ E+D
Sbjct: 121 QRALLAGDKETGVTIMEVVPALDAGAMILRGTLPITEHDTAQTLHDGLAEIGAELMLQAM 180
Query: 129 -------KLFFKPQSNIGESYAPLIKKNEAVLDWSLSAKTIMRKINAFNPFPGAKTYYIS 181
+L +PQ +YA ++K EAV+DW +A + R++ AFNPFP A +
Sbjct: 181 DKLEREGRLEAEPQDESLVTYAQKLQKAEAVIDWRKNADELSRQVRAFNPFPVAHSTL-- 238
Query: 182 YQNKKKFLKIWKAHALSIESTKKPGTILNVNFHNGILVVCGKNVIKLLELQKNNKKKISA 241
K + +IW A A+S T +PG I +V+ NGILV CG+ ++++ ELQ K++ A
Sbjct: 239 ---KGETCRIWMAQAVS--GTAEPGMIASVD--NGILVGCGRGLLRIDELQLPGGKRLQA 291
Query: 242 TEFING 247
+F+ G
Sbjct: 292 KDFLAG 297
>sp|B2VK94|FMT_ERWT9 Methionyl-tRNA formyltransferase OS=Erwinia tasmaniensis (strain
DSM 17950 / Et1/99) GN=fmt PE=3 SV=1
Length = 315
Score = 122 bits (305), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/306 (30%), Positives = 138/306 (45%), Gaps = 68/306 (22%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
+KIIFAGT AA LD L +S H +V + T+PD +GRG ++ SPVK+ A +H+I +
Sbjct: 5 LKIIFAGTPDFAARHLDALLSSGHQVVGVFTQPDRPAGRGNRVTASPVKQLAAQHNIPVF 64
Query: 61 QPIS-----------------------------LKLNGKYHKIANETHKLLNK------- 84
QP S L L H N LL +
Sbjct: 65 QPESLRSEENQQKVAALNADVMVVVAYGLILPKLVLEMPRHGCINVHGSLLPRWRGAAPI 124
Query: 85 ---------------IEFDIMIVMG---------ILPEDTSLTLQNKLEKLSKILIIDTI 120
++ DI + G I DTS TL +KL L ++ T+
Sbjct: 125 QRSLWAGDAETGVTIMQMDIGLDTGDMLHKLSCPIEAADTSATLYDKLADLGPAGLLTTL 184
Query: 121 KKIEYDMTKLFFKPQSNIGESYAPLIKKNEAVLDWSLSAKTIMRKINAFNPFPGAKTYYI 180
++ + + +S + SYA + K EA LDWSLSA+ + R I AFNP+P +Y++
Sbjct: 185 AQLADGSARPQVQDESLV--SYAEKLSKEEARLDWSLSAQQLERCIRAFNPWP--ISYFV 240
Query: 181 SYQNKKKFLKIWKAHALSIESTKKPGTILNVNFHNGILVVCGKNVIKLLELQKNNKKKIS 240
++ +K+WKA L + +PG IL N GI VV V+ + ELQ KK +
Sbjct: 241 I---DEQPVKVWKASVLPAVNGHQPGEILQAN-KQGIQVVTADGVLNIEELQPAGKKAMK 296
Query: 241 ATEFIN 246
A + +N
Sbjct: 297 AQDLLN 302
>sp|B2T1K6|FMT_BURPP Methionyl-tRNA formyltransferase OS=Burkholderia phytofirmans
(strain DSM 17436 / PsJN) GN=fmt PE=3 SV=1
Length = 328
Score = 117 bits (294), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 139/315 (44%), Gaps = 74/315 (23%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSP------------- 47
+++IFAGT AAA L ++++ + L+LT+PD +GRGMKL SP
Sbjct: 5 LRVIFAGTPEFAAAALAAIHSAGFQVPLVLTQPDRPAGRGMKLQASPVKRYAQEHGLAVA 64
Query: 48 -------VKKY------------ALKHSIKIIQPISLKLNGKYHKI-------------- 74
V KY A H + ++ L L + I
Sbjct: 65 QPPSLRRVGKYPAEAAAAIDQLRATPHDVMVVAAYGLILPQEVLDIPLLGCINIHASLLP 124
Query: 75 -------------ANETHKLLNKIEFDIMIVMG---------ILPEDTSLTLQNKLEKLS 112
A + + ++ D+ + G I +DT+ TL ++L +
Sbjct: 125 RWRGAAPIHRAIEAGDAETGITLMQMDVGLDTGAMISEARTAITADDTTATLHDRLAQDG 184
Query: 113 KILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLIKKNEAVLDWSLSAKTIMRKINAFNPF 172
LI++ + ++E KL PQ G +YA I K+EA LDW A + R++ AF+PF
Sbjct: 185 AKLIVEALIELER-TGKLAATPQPAEGVTYAEKIGKHEAALDWRRPAAVLARQVRAFDPF 243
Query: 173 PGAKTYYISYQNKKKFLKIWKAHALSIESTKKPGTILNVNFHNGILVVCGKNVIKLLELQ 232
PG ++ +K+W A A ++ PGTI +V+ G++V CG+ ++L +LQ
Sbjct: 244 PGG----VATLEDGTSIKLWAAVARDTQANGAPGTITDVS-PEGVVVACGEGALRLTQLQ 298
Query: 233 KNNKKKISATEFING 247
K K++ EF+ G
Sbjct: 299 KPGGKRLPVREFLAG 313
>sp|A6SU87|FMT_JANMA Methionyl-tRNA formyltransferase OS=Janthinobacterium sp. (strain
Marseille) GN=fmt PE=3 SV=1
Length = 316
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 93/169 (55%), Gaps = 11/169 (6%)
Query: 90 MIVMGILP---EDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLI 146
M+ M LP +DT+ +L +KL L +I+ T++++E L +PQ + G +YA I
Sbjct: 155 MLAMQRLPITADDTTASLHDKLATLGGEMIVQTLRRME--QGDLPAEPQPD-GANYAAKI 211
Query: 147 KKNEAVLDWSLSAKTIMRKINAFNPFPGAKTYYISYQNKKKFLKIWKAHALSIESTKKPG 206
K EA LD++ A+ + RKI AFNPFPGA +K W A A+ + PG
Sbjct: 212 LKEEATLDFTQPAEQLARKIRAFNPFPGAAATC-----DGTLIKFWHAQAVPASNQLPPG 266
Query: 207 TILNVNFHNGILVVCGKNVIKLLELQKNNKKKISATEFINGCIKNIKYF 255
++ N H+G+LV CG +++ ELQK K++SA EF+ G K F
Sbjct: 267 QVIAANPHDGVLVACGDGALRVTELQKPGGKRLSAVEFLKGFTLEDKRF 315
Score = 90.9 bits (224), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 67/101 (66%), Gaps = 3/101 (2%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
MKIIFAGT AA L L+ + I L+LT+PD +GRGM+L+ S VK++AL H I +
Sbjct: 1 MKIIFAGTPEFAAVALAALHAAGFEIPLVLTQPDRPAGRGMQLHASAVKQFALAHDIPVA 60
Query: 61 QPISLKLNGKYHKIANETHKLLNKIEFDIMIVMG---ILPE 98
QP+SL+L+GKY ++A E H LL D+M+V ILP+
Sbjct: 61 QPVSLRLDGKYPEVAAEAHALLKATPHDVMVVAAYGLILPQ 101
>sp|A3NQ23|FMT_BURP0 Methionyl-tRNA formyltransferase OS=Burkholderia pseudomallei
(strain 1106a) GN=fmt PE=3 SV=1
Length = 327
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/317 (24%), Positives = 134/317 (42%), Gaps = 77/317 (24%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRG----------------MKLN 44
+++IFAGT AAA L ++ + + L+LT+PD +GRG M +
Sbjct: 5 LRVIFAGTPEFAAAALAAIHEAGFPVPLVLTQPDRPAGRGMKLQASAVKRYALERGMAVA 64
Query: 45 FSPVKKYALKHSIKIIQPISLKLNGKYHKI------------------------------ 74
P + A K+ ++ + + L L+ H +
Sbjct: 65 QPPSLRRAGKYPVEAVAALDL-LHATPHDVMVVAAYGLLLPQEVLELPRHGCINIHASLL 123
Query: 75 --------------ANETHKLLNKIEFDIMIVMG---------ILPEDTSLTLQNKLEKL 111
A + + ++ D + G I P+DT+ TL +KL
Sbjct: 124 PRWRGAAPIHRAIEAGDAETGVTLMQMDAGLDTGAMLHEARVAIAPDDTTATLHDKLAAA 183
Query: 112 SKILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLIKKNEAVLDWSLSAKTIMRKINAFNP 171
L++D + ++E L PQ G +YA I K+EA LDW A + R++ AF+P
Sbjct: 184 GARLVVDALVELER-TGALAATPQPADGVTYAEKIGKHEAALDWRKPAAALARQVRAFDP 242
Query: 172 FPGAKTYYISYQNKKKFLKIWKAHALSIESTKKPGTILNVNFHNGILVVCGKNVIKLLEL 231
FPG LK+W A A+ PGTI+++ +G+++ CG+ +++ +L
Sbjct: 243 FPGGAGTL-----DGATLKLWAADAVPGRDDAAPGTIVDIG-PDGVVIACGEGALRVTQL 296
Query: 232 QKNNKKKISATEFINGC 248
QK K++ A EF+ G
Sbjct: 297 QKPGGKRLPAREFLAGA 313
>sp|Q6LLJ2|FMT_PHOPR Methionyl-tRNA formyltransferase OS=Photobacterium profundum GN=fmt
PE=3 SV=1
Length = 314
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/312 (27%), Positives = 137/312 (43%), Gaps = 80/312 (25%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
++I+FAGT AA L L +S+H ++ + T+PD +GRG KL SPVK AL++ + +
Sbjct: 5 LRIVFAGTPDFAARHLAALLSSQHEVIAVYTQPDRPAGRGKKLTASPVKNIALENDLPVY 64
Query: 61 QPISLKLNGKYHKIANETHKLLNKIEFDIMIVMG-----------------------ILP 97
QP SL+ + + L ++ DIM+V+ ILP
Sbjct: 65 QPASLR--------NEDAQQELAALKADIMVVVAYGLLLPKFVLDTPKLGCINVHGSILP 116
Query: 98 ----------------EDTSLTLQNKLEKL--SKILIIDTIKKIEYDMTKLFFKPQSNIG 139
E+T +T+ E L +L I T+ D + + + +G
Sbjct: 117 RWRGAAPIQRSIWAGDEETGVTIMQMDEGLDTGDMLTIATLPIEPTDTSATMYDKLAGLG 176
Query: 140 -------------------------ESYAPLIKKNEAVLDWSLSAKTIMRKINAFNPFPG 174
+YA + K EA +DW++ A I R I AFNP+P
Sbjct: 177 PNALIDCLSEISAGTAIAEKQNDELANYAKKLNKEEAKIDWAMEATAIERCIRAFNPWP- 235
Query: 175 AKTYYISYQNKKKFLKIWKAHALSIESTKKPGTILNVNFHNGILVVCGKNVIKLLELQKN 234
+ ++ QN +K+W A + K PGTIL+ + GI V GK ++L+ELQ
Sbjct: 236 MSYFAVAEQN----VKVWHAVVEAENQGKAPGTILSAD-KQGITVATGKGALRLIELQPP 290
Query: 235 NKKKISATEFIN 246
KK + A + +N
Sbjct: 291 GKKAMKAQDILN 302
>sp|Q2T2B1|FMT_BURTA Methionyl-tRNA formyltransferase OS=Burkholderia thailandensis
(strain E264 / ATCC 700388 / DSM 13276 / CIP 106301)
GN=fmt PE=3 SV=1
Length = 328
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 7/154 (4%)
Query: 95 ILPEDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLIKKNEAVLD 154
I P+DT+ TL +KL LI+D + ++E L PQ + G +YA I K+EA LD
Sbjct: 167 IAPDDTTATLHDKLAAAGATLIVDALVELER-AGALAATPQPDDGITYAEKIGKHEAALD 225
Query: 155 WSLSAKTIMRKINAFNPFPGAKTYYISYQNKKKFLKIWKAHALSIESTKKPGTILNVNFH 214
W A + R++ AF+PFPG LK+W A A+ PGTI++
Sbjct: 226 WRKPATVLARQVRAFDPFPGGAGTLDGVT-----LKLWAADAMPARGDAAPGTIVDAGA- 279
Query: 215 NGILVVCGKNVIKLLELQKNNKKKISATEFINGC 248
+G+++ CG+ +++ +LQK K++ A EF+ G
Sbjct: 280 DGVVIACGEGALRVTQLQKPGGKRLPAREFLAGA 313
Score = 71.2 bits (173), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 63/102 (61%), Gaps = 3/102 (2%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
+++IFAGT AAA L ++ + + L+LT+PD +GRGMKL S VK+YAL+H I +
Sbjct: 5 LRVIFAGTPEFAAAALAAIHEAGFPVPLVLTQPDRPAGRGMKLQASAVKRYALEHGITVA 64
Query: 61 QPISLKLNGKYHKIANETHKLLNKIEFDIMIVMG---ILPED 99
QP SL+ GK+ A LL+ D+M+V +LP++
Sbjct: 65 QPPSLRRAGKHPAEAAAALDLLHATPHDVMVVAAYGLLLPQE 106
>sp|Q62MT4|FMT_BURMA Methionyl-tRNA formyltransferase OS=Burkholderia mallei (strain
ATCC 23344) GN=fmt PE=3 SV=1
Length = 327
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/317 (25%), Positives = 133/317 (41%), Gaps = 77/317 (24%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGR----------------GMKLN 44
+++IFAGT AAA L ++ + + L+LT+PD +GR GM +
Sbjct: 5 LRVIFAGTPEFAAAALAAIHEAGFPVPLVLTQPDRPAGRGMKLQASAVKRYAFERGMAVA 64
Query: 45 FSPVKKYALKHSIKIIQPISLKLNGKYHKI------------------------------ 74
P + A K+ + + + L L+ H +
Sbjct: 65 QPPSLRRAGKYPAEAVAALDL-LHATPHDVMVVAAYGLLLPQEVLELPRHGCINIHASLL 123
Query: 75 --------------ANETHKLLNKIEFDIMIVMG---------ILPEDTSLTLQNKLEKL 111
A + + ++ D + G I P+DT+ TL +KL
Sbjct: 124 PRWRGAAPIHRAIEAGDAETGVTLMQMDAGLDTGAMLHEARVAIAPDDTTATLHDKLAAA 183
Query: 112 SKILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLIKKNEAVLDWSLSAKTIMRKINAFNP 171
LI+D + ++E L PQ G +YA I K+EA LDW A + R++ AF+P
Sbjct: 184 GARLIVDALVELER-TGALAATPQPADGVTYAEKIGKHEAALDWRKPAAALARQVRAFDP 242
Query: 172 FPGAKTYYISYQNKKKFLKIWKAHALSIESTKKPGTILNVNFHNGILVVCGKNVIKLLEL 231
FPG LK+W A A+ PGTI+++ +G+++ CG+ +++ +L
Sbjct: 243 FPGGAGTL-----DGATLKLWAADAVPGRDDAAPGTIVDIG-PDGVVIACGEGALRVTQL 296
Query: 232 QKNNKKKISATEFINGC 248
QK K++ A EF+ G
Sbjct: 297 QKPGGKRLPAREFLAGA 313
>sp|Q63YR6|FMT_BURPS Methionyl-tRNA formyltransferase OS=Burkholderia pseudomallei
(strain K96243) GN=fmt PE=3 SV=1
Length = 327
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/317 (25%), Positives = 133/317 (41%), Gaps = 77/317 (24%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGR----------------GMKLN 44
+++IFAGT AAA L ++ + + L+LT+PD +GR GM +
Sbjct: 5 LRVIFAGTPEFAAAALAAIHEAGFPVPLVLTQPDRPAGRGMKLQASAVKRYALERGMAVA 64
Query: 45 FSPVKKYALKHSIKIIQPISLKLNGKYHKI------------------------------ 74
P + A K+ + + + L L+ H +
Sbjct: 65 QPPSLRRAGKYPAEAVAALDL-LHATPHDVMVVAAYGLLLPQEVLELPRHGCINIHASLL 123
Query: 75 --------------ANETHKLLNKIEFDIMIVMG---------ILPEDTSLTLQNKLEKL 111
A + + ++ D + G I P+DT+ TL +KL
Sbjct: 124 PRWRGAAPIHRAIEAGDAETGVTLMQMDAGLDTGAMLHEARVAIAPDDTTATLHDKLAAA 183
Query: 112 SKILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLIKKNEAVLDWSLSAKTIMRKINAFNP 171
LI+D + ++E L PQ G +YA I K+EA LDW A + R++ AF+P
Sbjct: 184 GARLIVDALVELER-TGALAATPQPADGVTYAEKIGKHEAALDWRKPAAALARQVRAFDP 242
Query: 172 FPGAKTYYISYQNKKKFLKIWKAHALSIESTKKPGTILNVNFHNGILVVCGKNVIKLLEL 231
FPG LK+W A A+ PGTI+++ +G+++ CG+ +++ +L
Sbjct: 243 FPGGAGTL-----DGATLKLWAADAVPGRDDAAPGTIVDIG-PDGVVIACGEGALRVTQL 296
Query: 232 QKNNKKKISATEFINGC 248
QK K++ A EF+ G
Sbjct: 297 QKPGGKRLPAREFLAGA 313
>sp|Q3JXE1|FMT_BURP1 Methionyl-tRNA formyltransferase OS=Burkholderia pseudomallei
(strain 1710b) GN=fmt PE=3 SV=1
Length = 327
Score = 112 bits (279), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/317 (24%), Positives = 133/317 (41%), Gaps = 77/317 (24%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGR----------------GMKLN 44
+++IFAGT AAA L ++ + + L+LT+PD +GR GM +
Sbjct: 5 LRVIFAGTPEFAAAALAAIHEAGFPVPLVLTQPDRPAGRGMKLQASAVKRYAFERGMAVA 64
Query: 45 FSPVKKYALKHSIKIIQPISLKLNGKYHKI------------------------------ 74
P + A K+ + + + L L+ H +
Sbjct: 65 QPPSLRRAGKYPAEAVAALDL-LHATPHDVMVVAAYGLLLPQEVLELPRHGCINIHASLL 123
Query: 75 --------------ANETHKLLNKIEFDIMIVMG---------ILPEDTSLTLQNKLEKL 111
A + + ++ D + G I P+DT+ TL +KL
Sbjct: 124 PRWRGAAPIHRAIEAGDAETGVTLMQMDAGLDTGAMLHEARVAIAPDDTTATLHDKLAAA 183
Query: 112 SKILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLIKKNEAVLDWSLSAKTIMRKINAFNP 171
L++D + ++E L PQ G +YA I K+EA LDW A + R++ AF+P
Sbjct: 184 GARLVVDALVELER-TGALAATPQPADGVTYAEKIGKHEAALDWRKPAAALARQVRAFDP 242
Query: 172 FPGAKTYYISYQNKKKFLKIWKAHALSIESTKKPGTILNVNFHNGILVVCGKNVIKLLEL 231
FPG LK+W A A+ PGTI+++ +G+++ CG+ +++ +L
Sbjct: 243 FPGGAGTL-----DGATLKLWAADAVPGRDDAAPGTIVDIG-PDGVVIACGEGALRVTQL 296
Query: 232 QKNNKKKISATEFINGC 248
QK K++ A EF+ G
Sbjct: 297 QKPGGKRLPAREFLAGA 313
>sp|C5CQE1|FMT_VARPS Methionyl-tRNA formyltransferase OS=Variovorax paradoxus (strain
S110) GN=fmt PE=3 SV=1
Length = 318
Score = 112 bits (279), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 142/311 (45%), Gaps = 70/311 (22%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
+K++FAGT A A L+ + + H I L+L++PD +GRGMKL SPVK+ A+ H +
Sbjct: 4 LKVVFAGTPEFARAALEAIAAAGHEIALVLSQPDRPAGRGMKLQASPVKQCAVAHGWPVA 63
Query: 61 QPISLKLNGKYHKIANETHKLLNKIEFDIMIVMG---ILPE------------------- 98
QP SL+L+GKY + A + L D+M+V ILP+
Sbjct: 64 QPRSLRLDGKYPQDAAAAREALLAARPDVMVVAAYGLILPQWVLDLPVHGCLNIHASLLP 123
Query: 99 --------------------------DTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFF 132
D L + L + + + DT ++ + +L
Sbjct: 124 RWRGAAPIHRAIEAGDAQTGITIMQMDAGLDTGDMLLREAVDIGSDTTARLHDRLAELGG 183
Query: 133 K---------------PQSNIGESYAPLIKKNEAVLDWSLSAKTIMRKINAFNPFPGAKT 177
+ PQ G +YA ++K+EA +DW+ A I+R+I AF+PFPGA +
Sbjct: 184 RLIVQALADIGRLARTPQPAEGVTYASKVEKHEAQIDWNQPADAIVRRIRAFDPFPGANS 243
Query: 178 YYISYQNKKKFLKIWKAHAL-SIESTKKPGTILNVNFHNGILVVCGKNVIKLLELQKNNK 236
+ +K+W AHA E + PGT+L V+ + V +V+ ELQ+
Sbjct: 244 LL-----DGETIKLWAAHAAPPAEVSAAPGTLLAVSDAG-VAVAAAGSVVMATELQRPGG 297
Query: 237 KKISATEFING 247
K+++ +F+ G
Sbjct: 298 KRLAVADFLRG 308
>sp|A3N4D4|FMT_BURP6 Methionyl-tRNA formyltransferase OS=Burkholderia pseudomallei
(strain 668) GN=fmt PE=3 SV=1
Length = 327
Score = 112 bits (279), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/317 (24%), Positives = 133/317 (41%), Gaps = 77/317 (24%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGR----------------GMKLN 44
+++IFAGT AAA L ++ + + L+LT+PD +GR GM +
Sbjct: 5 LRVIFAGTPEFAAAALAAIHEAGFPVPLVLTQPDRPAGRGMKLQASAVKRYALERGMAVA 64
Query: 45 FSPVKKYALKHSIKIIQPISLKLNGKYHKI------------------------------ 74
P + A K+ + + + L L+ H +
Sbjct: 65 QPPSLRRAGKYPAEAVAALDL-LHATPHDVMVVAAYGLLLPQEVLELPRHGCINIHASLL 123
Query: 75 --------------ANETHKLLNKIEFDIMIVMG---------ILPEDTSLTLQNKLEKL 111
A + + ++ D + G I P+DT+ TL +KL
Sbjct: 124 PRWRGAAPIHRAIEAGDAETGVTLMQMDAGLDTGAMLHEARVAIAPDDTTATLHDKLAAA 183
Query: 112 SKILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLIKKNEAVLDWSLSAKTIMRKINAFNP 171
L++D + ++E L PQ G +YA I K+EA LDW A + R++ AF+P
Sbjct: 184 GARLVVDALVELER-TGALAATPQPADGVTYAEKIGKHEAALDWRKPAAALARQVRAFDP 242
Query: 172 FPGAKTYYISYQNKKKFLKIWKAHALSIESTKKPGTILNVNFHNGILVVCGKNVIKLLEL 231
FPG LK+W A A+ PGTI+++ +G+++ CG+ +++ +L
Sbjct: 243 FPGGAGTL-----DGATLKLWAADAVPGRDDAAPGTIVDIG-PDGVVIACGEGALRVTQL 296
Query: 232 QKNNKKKISATEFINGC 248
QK K++ A EF+ G
Sbjct: 297 QKPGGKRLPAREFLAGA 313
>sp|B4F1L6|FMT_PROMH Methionyl-tRNA formyltransferase OS=Proteus mirabilis (strain
HI4320) GN=fmt PE=3 SV=1
Length = 316
Score = 112 bits (279), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 87/307 (28%), Positives = 149/307 (48%), Gaps = 69/307 (22%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
++IIFAGT AA L L +++H+IV +LT PD +GRG KL +PVK+ AL ++I +
Sbjct: 5 LRIIFAGTPDFAARHLAALLSTQHHIVGVLTPPDKPAGRGKKLTINPVKELALTNNIPVY 64
Query: 61 QPISLKLNGKYHKI---------------------------------------------- 74
QP SLK + I
Sbjct: 65 QPTSLKPEENHEWIKALQPDVMIVVAYGMILPKAVLDIPRLGCLNVHGSLLPKWRGAAPI 124
Query: 75 -----ANETHKLLNKIEFDIMIVMG---------ILPEDTSLTLQNKLEKLSKILIIDTI 120
A +T + ++ D+ + G I +DTS +L KL +L +I+T+
Sbjct: 125 QRALWAGDTETGVTIMQMDVGLDTGDMLYKASCPITHQDTSASLYAKLAELGPKALINTL 184
Query: 121 KKIEYDMTKLFFKPQSNIGESYAPLIKKNEAVLDWSLSAKTIMRKINAFNPFPGAKTYYI 180
I +L + Q + +YA + K EA ++WSLSA+ I R I AFNP+P ++++
Sbjct: 185 DLIISG--ELKAEKQDDSLANYAEKLSKEEAKINWSLSAQQIERCIRAFNPWP--MSFFM 240
Query: 181 SYQNKKKFLKIWKAHALSIESTKK-PGTILNVNFHNGILVVCGKNVIKLLELQKNNKKKI 239
+ +K+W+A ++ ++T + PGT+L + GI +V G+ ++ + +LQ + KK +
Sbjct: 241 L---DDQPVKVWEAQVIASDNTNQIPGTLLKAD-KTGIYIVTGEGILNITKLQPSGKKPM 296
Query: 240 SATEFIN 246
++ +F+N
Sbjct: 297 ASADFLN 303
>sp|A9AC69|FMT_BURM1 Methionyl-tRNA formyltransferase OS=Burkholderia multivorans
(strain ATCC 17616 / 249) GN=fmt PE=3 SV=1
Length = 327
Score = 111 bits (277), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 81/153 (52%), Gaps = 7/153 (4%)
Query: 95 ILPEDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLIKKNEAVLD 154
I P+DT+ TL ++L LI+D + ++E D T L PQ G +YA I K+EA LD
Sbjct: 167 IAPDDTTATLHDRLAADGARLIVDALARLERDGT-LAATPQPADGVTYAEKIGKHEAALD 225
Query: 155 WSLSAKTIMRKINAFNPFPGAKTYYISYQNKKKFLKIWKAHALSIESTKKPGTILNVNFH 214
W A + R++ AF+PFPG +KIW A + PGTI+
Sbjct: 226 WRKPADVLARQVRAFDPFPGGVATL-----DGAAIKIWAAEPATGRGDAAPGTIVEAA-P 279
Query: 215 NGILVVCGKNVIKLLELQKNNKKKISATEFING 247
+G++V CG +++ +LQK K++ A EF+ G
Sbjct: 280 DGVIVACGTGALRVTQLQKPGGKRLPAREFLAG 312
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 64/102 (62%), Gaps = 3/102 (2%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
+++IFAGT AAA L ++++ L+LT+PD +GRGMKL S VK+YAL+H + +
Sbjct: 5 LRVIFAGTPEFAAAALAAIHDAGFAAPLVLTQPDRPAGRGMKLQASAVKRYALEHGLPVA 64
Query: 61 QPISLKLNGKYHKIANETHKLLNKIEFDIMIVMG---ILPED 99
QP SL+ GKY A E +LL D+M+V +LP++
Sbjct: 65 QPPSLRRAGKYPAEAAEAIELLRATPHDVMVVAAYGLLLPQE 106
>sp|A4G1G8|FMT_HERAR Methionyl-tRNA formyltransferase OS=Herminiimonas arsenicoxydans
GN=fmt PE=3 SV=1
Length = 317
Score = 110 bits (275), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 92/169 (54%), Gaps = 10/169 (5%)
Query: 90 MIVMGILP---EDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLI 146
M++M LP +DT+ +L +KL +L +I++ + K+E +L PQ G +YA I
Sbjct: 155 MLLMESLPIAADDTTASLHDKLARLGGEMIVEALLKLEKG--ELTATPQPEAGANYAAKI 212
Query: 147 KKNEAVLDWSLSAKTIMRKINAFNPFPGAKTYYISYQNKKKFLKIWKAHALSIESTKKPG 206
K EA LD SA+ + RKI AFNPFPGA I KF W+A AL + G
Sbjct: 213 AKEEATLDLRQSAQELARKIRAFNPFPGA--MGICNGTPVKF---WQAQALECSNQWPAG 267
Query: 207 TILNVNFHNGILVVCGKNVIKLLELQKNNKKKISATEFINGCIKNIKYF 255
+++ N +G+++ CG +++ ELQK K++ A EFI G + F
Sbjct: 268 QVISANAQDGVVIACGDGALRVTELQKPGGKRLPAAEFIKGFALEAQRF 316
Score = 91.3 bits (225), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 50/101 (49%), Positives = 65/101 (64%), Gaps = 3/101 (2%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
MKIIFAGT AA L L+ + I L+LT+PD +GRGM+L S VK++AL H I +
Sbjct: 1 MKIIFAGTPEFAAVALAALHAAGFEIPLVLTQPDRPAGRGMQLQASAVKQFALAHKIPVA 60
Query: 61 QPISLKLNGKYHKIANETHKLLNKIEFDIMIVMG---ILPE 98
QPISL+L+GKY +A E H LL D+M+V ILP+
Sbjct: 61 QPISLRLDGKYPDVAQEAHDLLRATPHDVMVVAAYGLILPQ 101
>sp|Q0BAT6|FMT_BURCM Methionyl-tRNA formyltransferase OS=Burkholderia ambifaria (strain
ATCC BAA-244 / AMMD) GN=fmt PE=3 SV=1
Length = 327
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/316 (25%), Positives = 130/316 (41%), Gaps = 77/316 (24%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGR----------------GMKLN 44
+++IFAGT AAA L ++ + + L+LT+PD +GR GM +
Sbjct: 5 LRVIFAGTPEFAAAALAAIHEAGFPVPLVLTQPDRPAGRGMKLQASAVKRYAVEHGMPVA 64
Query: 45 FSPVKKYALKHSIKIIQPISLKLNGKYHKI------------------------------ 74
P + A K+ + I L L H +
Sbjct: 65 QPPSLRRAGKYPAEAADAIEL-LRTTPHDVMVVAAYGLLLPQEVLDIPRAGCINIHASLL 123
Query: 75 --------------ANETHKLLNKIEFDIMIVMG---------ILPEDTSLTLQNKLEKL 111
A + + ++ D+ + G I P+DT+ TL ++L
Sbjct: 124 PRWRGAAPIHRAIEAGDAETGVTLMQMDVGLDTGAMIDEARVAIAPDDTTATLHDRLAAD 183
Query: 112 SKILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLIKKNEAVLDWSLSAKTIMRKINAFNP 171
LI+D + ++E D L PQ G +YA I K+EA LDW A + R++ AF+P
Sbjct: 184 GARLIVDALVRLERD-GALPATPQPADGVTYAEKIGKHEAALDWRKPADVLARQVRAFDP 242
Query: 172 FPGAKTYYISYQNKKKFLKIWKAHALSIESTKKPGTILNVNFHNGILVVCGKNVIKLLEL 231
FPG +K+W A ++ PGTI++ G++V CG +++ +L
Sbjct: 243 FPGGVATL-----DGAAIKLWAAEPVAARGDAAPGTIVDAA-PEGVIVACGSGALRVTQL 296
Query: 232 QKNNKKKISATEFING 247
QK K++ A EF+ G
Sbjct: 297 QKPGGKRLPAREFLAG 312
>sp|A4JJ22|FMT_BURVG Methionyl-tRNA formyltransferase OS=Burkholderia vietnamiensis
(strain G4 / LMG 22486) GN=fmt PE=3 SV=1
Length = 327
Score = 108 bits (271), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 130/316 (41%), Gaps = 77/316 (24%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGR----------------GMKLN 44
+++IFAGT AAA L ++ + + L+LT+PD +GR GM +
Sbjct: 5 LRVIFAGTPEFAAAALAAIHEAGFPVPLVLTQPDRPAGRGMKLQASAVKRYAVEHGMPVA 64
Query: 45 FSPVKKYALKHSIKIIQPISLKLNGKYHKI------------------------------ 74
P + A K + + I L L H +
Sbjct: 65 QPPSLRRAGKFPAEAAEAIEL-LRATPHDVMVVAAYGLLLPQEVLDIPRAGCINIHASLL 123
Query: 75 --------------ANETHKLLNKIEFDIMIVMG---------ILPEDTSLTLQNKLEKL 111
A + + ++ D+ + G I P+DT+ TL ++L
Sbjct: 124 PRWRGAAPIHRAIEAGDAETGVTLMQMDVGLDTGAMIDEARIAIAPDDTTATLHDRLAAD 183
Query: 112 SKILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLIKKNEAVLDWSLSAKTIMRKINAFNP 171
LI+ ++++E D L PQ G +YA I K+EA LDW +A + R++ AF+P
Sbjct: 184 GARLIVAALERLERD-GALPATPQPADGVTYAEKIGKHEAALDWRKAADVLARQVRAFDP 242
Query: 172 FPGAKTYYISYQNKKKFLKIWKAHALSIESTKKPGTILNVNFHNGILVVCGKNVIKLLEL 231
FPG +K+W A ++ PGTI+ G++V CG +++ +L
Sbjct: 243 FPGGVATL-----DGAAIKLWAAEPVAARGDAAPGTIVEAA-PEGVIVACGAGALRVTQL 296
Query: 232 QKNNKKKISATEFING 247
QK K++ A EF+ G
Sbjct: 297 QKPGGKRLPAREFLAG 312
>sp|B1K0J5|FMT_BURCC Methionyl-tRNA formyltransferase OS=Burkholderia cenocepacia
(strain MC0-3) GN=fmt PE=3 SV=1
Length = 330
Score = 108 bits (270), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/319 (25%), Positives = 132/319 (41%), Gaps = 80/319 (25%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGR----------------GMKLN 44
+++IFAGT AAA L ++ + + L+LT+PD +GR GM +
Sbjct: 5 LRVIFAGTPEFAAAALAAIHKAGFPVPLVLTQPDRPAGRGMKLQASAVKRYAVEHGMAVA 64
Query: 45 FSPVKKYALKHSIKIIQPISLKLNGKYHKI------------------------------ 74
P + A K+ + I L L H +
Sbjct: 65 QPPSLRRAGKYPAEAADAIEL-LRTTPHDVMVVAAYGLLLPQEVLDIPRAGCINIHASLL 123
Query: 75 --------------ANETHKLLNKIEFDIMIVMG---------ILPEDTSLTLQNKLEKL 111
A + + ++ D+ + G I P+DT+ TL ++L
Sbjct: 124 PRWRGAAPIHRAIEAGDAETGVTLMQMDVGLDTGAMIEEARIAIAPDDTTATLHDRLAAA 183
Query: 112 SKILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLIKKNEAVLDWSLSAKTIMRKINAFNP 171
LI+D + ++E D T L PQ G +YA I K+EA LDW A + R++ AF+P
Sbjct: 184 GARLIVDALVRLERDGT-LPATPQPADGVTYAEKIGKHEAALDWRKPADVLARQVRAFDP 242
Query: 172 FPGAKTYYISYQNKKKFLKIWKAHALSIE---STKKPGTILNVNFHNGILVVCGKNVIKL 228
FPG +K+W A ++ +T PGTI+ G++V CG +++
Sbjct: 243 FPGGVATL-----DGAAIKLWAAEPVAAHGTIATAAPGTIVEAA-PEGVVVACGSGALRV 296
Query: 229 LELQKNNKKKISATEFING 247
+LQK K++ A EF+ G
Sbjct: 297 TQLQKPGGKRLPAREFLAG 315
>sp|Q5P4H6|FMT_AROAE Methionyl-tRNA formyltransferase OS=Aromatoleum aromaticum (strain
EbN1) GN=fmt PE=3 SV=1
Length = 316
Score = 108 bits (270), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 10/153 (6%)
Query: 95 ILPEDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLIKKNEAVLD 154
I P DT+ L ++L L +I++ ++++ +L PQ G +YA I K EAV+D
Sbjct: 160 IGPADTTGALHDRLAALGAQMIVEALRRLPSG--ELVAMPQPAEGATYAGKIGKAEAVID 217
Query: 155 WSLSAKTIMRKINAFNPFPGAKTYYISYQNKKKFLKIWKAHALSIESTKKPGTILNVNFH 214
W A ++ R + AFNPFPGA ++ LKIW A + +PGT+L V
Sbjct: 218 WQCDASSVARAVRAFNPFPGAVASL-----RQVPLKIWFAE--PVAGHGEPGTVL-VADA 269
Query: 215 NGILVVCGKNVIKLLELQKNNKKKISATEFING 247
+GI+V CG ++L +LQK ++++A EF+ G
Sbjct: 270 DGIVVACGTQAVRLAQLQKPGSRRLAAGEFLRG 302
>sp|A0KBJ7|FMT_BURCH Methionyl-tRNA formyltransferase OS=Burkholderia cenocepacia
(strain HI2424) GN=fmt PE=3 SV=1
Length = 330
Score = 108 bits (269), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 82/319 (25%), Positives = 132/319 (41%), Gaps = 80/319 (25%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGR----------------GMKLN 44
+++IFAGT AAA L ++ + + L+LT+PD +GR GM +
Sbjct: 5 LRVIFAGTPEFAAAALAAIHKAGFPVPLVLTQPDRPAGRGMKLQASAVKRYAVEHGMAVA 64
Query: 45 FSPVKKYALKHSIKIIQPISLKLNGKYHKI------------------------------ 74
P + A K+ + I L L H +
Sbjct: 65 QPPSLRRAGKYPAEAADAIEL-LRTTPHDVMVVAAYGLLLPQEVLDIPRAGCINIHASLL 123
Query: 75 --------------ANETHKLLNKIEFDIMIVMG---------ILPEDTSLTLQNKLEKL 111
A + + ++ D+ + G I P+DT+ TL ++L
Sbjct: 124 PRWRGAAPIHRAIEAGDAETGVTLMQMDVGLDTGAMIEEARIAIAPDDTTATLHDRLAAD 183
Query: 112 SKILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLIKKNEAVLDWSLSAKTIMRKINAFNP 171
LI+D + ++E D T L PQ G +YA I K+EA LDW A + R++ AF+P
Sbjct: 184 GARLIVDALVRLERDGT-LPATPQPADGVTYAEKIGKHEAALDWRKPADVLARQVRAFDP 242
Query: 172 FPGAKTYYISYQNKKKFLKIWKAHALSIEST---KKPGTILNVNFHNGILVVCGKNVIKL 228
FPG +K+W A ++ + T PGTI+ G++V CG +++
Sbjct: 243 FPGGVATL-----DGAAIKLWAAEPVATDGTIASAAPGTIVEAA-PEGVVVACGSGALRV 296
Query: 229 LELQKNNKKKISATEFING 247
+LQK K++ A EF+ G
Sbjct: 297 TQLQKPGGKRLPAREFLAG 315
>sp|Q1BSJ4|FMT_BURCA Methionyl-tRNA formyltransferase OS=Burkholderia cenocepacia
(strain AU 1054) GN=fmt PE=3 SV=1
Length = 330
Score = 108 bits (269), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 82/319 (25%), Positives = 132/319 (41%), Gaps = 80/319 (25%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGR----------------GMKLN 44
+++IFAGT AAA L ++ + + L+LT+PD +GR GM +
Sbjct: 5 LRVIFAGTPEFAAAALAAIHKAGFPVPLVLTQPDRPAGRGMKLQASAVKRYAVEHGMAVA 64
Query: 45 FSPVKKYALKHSIKIIQPISLKLNGKYHKI------------------------------ 74
P + A K+ + I L L H +
Sbjct: 65 QPPSLRRAGKYPAEAADAIEL-LRTTPHDVMVVAAYGLLLPQEVLDIPRAGCINIHASLL 123
Query: 75 --------------ANETHKLLNKIEFDIMIVMG---------ILPEDTSLTLQNKLEKL 111
A + + ++ D+ + G I P+DT+ TL ++L
Sbjct: 124 PRWRGAAPIHRAIEAGDAETGVTLMQMDVGLDTGAMIEEARIAIAPDDTTATLHDRLAAD 183
Query: 112 SKILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLIKKNEAVLDWSLSAKTIMRKINAFNP 171
LI+D + ++E D T L PQ G +YA I K+EA LDW A + R++ AF+P
Sbjct: 184 GARLIVDALVRLERDGT-LPATPQPADGVTYAEKIGKHEAALDWRKPADVLARQVRAFDP 242
Query: 172 FPGAKTYYISYQNKKKFLKIWKAHALSIEST---KKPGTILNVNFHNGILVVCGKNVIKL 228
FPG +K+W A ++ + T PGTI+ G++V CG +++
Sbjct: 243 FPGGVATL-----DGAAIKLWAAEPVATDGTIASAAPGTIVEAA-PEGVVVACGSGALRV 296
Query: 229 LELQKNNKKKISATEFING 247
+LQK K++ A EF+ G
Sbjct: 297 TQLQKPGGKRLPAREFLAG 315
>sp|B1YPX6|FMT_BURA4 Methionyl-tRNA formyltransferase OS=Burkholderia ambifaria (strain
MC40-6) GN=fmt PE=3 SV=1
Length = 327
Score = 108 bits (269), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 7/153 (4%)
Query: 95 ILPEDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLIKKNEAVLD 154
I P+DT+ TL ++L LI+D + ++E D L PQ G +YA I K+EA LD
Sbjct: 167 IAPDDTTATLHDRLAADGARLIVDALVRLERD-GALPATPQPADGVTYAEKIGKHEAALD 225
Query: 155 WSLSAKTIMRKINAFNPFPGAKTYYISYQNKKKFLKIWKAHALSIESTKKPGTILNVNFH 214
W A + R++ AF+PFPG +K+W A ++ PGTI++
Sbjct: 226 WRKPADVLARQVRAFDPFPGGVATL-----DGAAIKLWAAEPVAARGDAVPGTIVDAA-P 279
Query: 215 NGILVVCGKNVIKLLELQKNNKKKISATEFING 247
G++V CG +++ +LQK K++ A EF+ G
Sbjct: 280 EGVIVACGSGALRVTQLQKPGGKRLPAREFLAG 312
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 64/102 (62%), Gaps = 3/102 (2%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
+++IFAGT AAA L ++ + + L+LT+PD +GRGMKL S VK+YA++H I +
Sbjct: 5 LRVIFAGTPEFAAAALAAIHEAGFPVPLVLTQPDRPAGRGMKLQASAVKRYAVEHGIPVA 64
Query: 61 QPISLKLNGKYHKIANETHKLLNKIEFDIMIVMG---ILPED 99
QP SL+ GKY A + +LL D+M+V +LP++
Sbjct: 65 QPPSLRRAGKYPGEAADAIELLRTTPHDVMVVAAYGLLLPQE 106
>sp|B2U795|FMT_RALPJ Methionyl-tRNA formyltransferase OS=Ralstonia pickettii (strain
12J) GN=fmt PE=3 SV=1
Length = 327
Score = 108 bits (269), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 12/173 (6%)
Query: 90 MIVMGILP---EDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLI 146
MI M +P DT+ TL + L L ++++ + K+ D KL PQ G +YA I
Sbjct: 160 MIAMERVPIGLTDTTGTLHDTLAALGGRMVVEALAKLAQD-GKLHATPQPAEGITYAEKI 218
Query: 147 KKNEAVLDWSLSAKTIMRKINAFNPFPGAKTYYISYQNKKKFLKIWKAHALSIESTK-KP 205
K+EA LDWS A ++R+++AFNPFPGA +K W+A L+ + +P
Sbjct: 219 AKDEAALDWSRHAAALLRQVHAFNPFPGASAALDGVA-----IKFWQAEVLADRPAEAEP 273
Query: 206 GTILNVNFHNGILVVCGKNVIKLLELQKNNKKKISATEFING-CIKNIKYFIS 257
G +L N G+ + CG +++ +LQK K++ A EF+ G I+ + F S
Sbjct: 274 GVVLAAN-AEGVTIACGAGALRVTQLQKPGGKRLPAREFLQGLAIQPGQRFAS 325
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSI-KI 59
+++ FAGT A L ++ + +V +L++PD +GRGM+L SPV +YA+ H I
Sbjct: 5 LRVAFAGTPEFAQIALAAIHQAGFPVVAVLSQPDRPAGRGMQLQASPVTQYAVTHGFAPI 64
Query: 60 IQPISLKLNGKYHKIANETHKLLNKIEFDIMIVMG---ILPED 99
+QP SL+ GKY + A E L D+M+V ILP++
Sbjct: 65 LQPPSLRRTGKYPQEAAEAIDALTAQRPDVMVVAAYGLILPQE 107
>sp|B4E7V8|FMT_BURCJ Methionyl-tRNA formyltransferase OS=Burkholderia cepacia (strain
J2315 / LMG 16656) GN=fmt PE=3 SV=1
Length = 330
Score = 107 bits (268), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 82/319 (25%), Positives = 131/319 (41%), Gaps = 80/319 (25%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGR----------------GMKLN 44
+++IFAGT AAA L ++ + + L+LT+PD +GR GM +
Sbjct: 5 LRVIFAGTPEFAAAALAAIHEAGFPVPLVLTQPDRPAGRGMKLQASAVKRYAVEHGMTVA 64
Query: 45 FSPVKKYALKHSIKIIQPISLKLNGKYHKI------------------------------ 74
P + A K+ + I L L H +
Sbjct: 65 QPPSLRRAGKYPAEAADAIEL-LRTTQHDVMVVAAYGLLLPQEVLDIPRAGCINIHASLL 123
Query: 75 --------------ANETHKLLNKIEFDIMIVMG---------ILPEDTSLTLQNKLEKL 111
A + + ++ D+ + G I P+DT+ TL ++L
Sbjct: 124 PRWRGAAPIHRAIEAGDAETGVTLMQMDVGLDTGAMIEEARIAIAPDDTTATLHDRLAAD 183
Query: 112 SKILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLIKKNEAVLDWSLSAKTIMRKINAFNP 171
LI+D + ++E D T L PQ G +YA I K+EA LDW A + R++ AF+P
Sbjct: 184 GARLIVDALVRLERDGT-LPATPQPADGVTYAEKIGKHEAALDWRKPADVLARQVRAFDP 242
Query: 172 FPGAKTYYISYQNKKKFLKIWKAHALSIEST---KKPGTILNVNFHNGILVVCGKNVIKL 228
FPG +K+W A ++ T PGTI+ G++V CG +++
Sbjct: 243 FPGGVATL-----DGAAIKLWAAEPVAARGTMANAAPGTIVEAA-PEGVVVACGSGALRV 296
Query: 229 LELQKNNKKKISATEFING 247
+LQK K++ A EF+ G
Sbjct: 297 TQLQKPGGKRLPAREFLAG 315
>sp|Q3AC19|FMT_CARHZ Methionyl-tRNA formyltransferase OS=Carboxydothermus
hydrogenoformans (strain Z-2901 / DSM 6008) GN=fmt PE=3
SV=1
Length = 308
Score = 107 bits (267), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 144/309 (46%), Gaps = 74/309 (23%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
M+I++ GT A L L S H + L++TKPD +GRG K+ SPVK +A ++ +++I
Sbjct: 1 MRIVYMGTPEFAVKPLAKLI-SHHEVALVVTKPDAAAGRGKKVISSPVKLFAQENHLRVI 59
Query: 61 QPISLKLN--------------------GK-----------------------YHKIANE 77
P LK N GK +++ A
Sbjct: 60 TP--LKFNEEVYQEILAVKPEVIVVAAYGKLLPREILNIPPYGCLNIHASLLPFYRGAAP 117
Query: 78 THKLLNKIEFDIMIVMGILPE--DTS-LTLQNK---------------LEKLSKILIIDT 119
+ L E + I + + E DT + LQ K L ++ LII+
Sbjct: 118 IERCLMAGEKETGITIMFMDEGLDTGDIALQEKVAINQEITGGELRKILAEIGADLIIEA 177
Query: 120 IKKI-EYDMTKLFFKPQSNIGESYAPLIKKNEAVLDWSLSAKTIMRKINAFNPFPGAKTY 178
+K++ E + ++ PQ + +YAP +KK + ++ W+ SA+ I +I A NP PGA
Sbjct: 178 LKRLREGGLPRV---PQDHQLATYAPPLKKEDEIIHWADSAEKIRNQIRALNPVPGA--- 231
Query: 179 YISYQNKKKFLKIWKAHALSIESTKKPGTILNVNFHNGILVVCGKNVIKLLELQKNNKKK 238
Y ++ KK +KIWKA S KKPG I+ + NG LV G+ +++LELQ KK
Sbjct: 232 YTVFRGKK--IKIWKAKVGEF-SGKKPGEIIFADRKNGFLVATGERGLQILELQPEGGKK 288
Query: 239 ISATEFING 247
+S F+NG
Sbjct: 289 MSWESFLNG 297
>sp|Q39BU5|FMT_BURS3 Methionyl-tRNA formyltransferase OS=Burkholderia sp. (strain 383)
GN=fmt PE=3 SV=1
Length = 327
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 129/316 (40%), Gaps = 77/316 (24%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGR----------------GMKLN 44
++++FAGT AAA L ++ + + L+LT+PD +GR GM +
Sbjct: 5 LRVVFAGTPEFAAAALAAIHEAGFPVPLVLTQPDRPAGRGMKLQASAVKRYAVEHGMPVA 64
Query: 45 FSPVKKYALKHSIKIIQPISLKLNGKYHKI------------------------------ 74
P + A K+ + I L L H +
Sbjct: 65 QPPSLRRAGKYPAEAADAIEL-LRSTPHDVMVVAAYGLLLPQEVLDIPRDGCINIHASLL 123
Query: 75 --------------ANETHKLLNKIEFDIMIVMG---------ILPEDTSLTLQNKLEKL 111
A + + ++ DI + G I P++T+ TL ++L
Sbjct: 124 PRWRGAAPIHRAIEAGDAETGVTLMQMDIGLDTGAMIEEARIAIAPDETTATLHDRLAAE 183
Query: 112 SKILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLIKKNEAVLDWSLSAKTIMRKINAFNP 171
LI+D + ++E D L PQ G +YA I K+EA LDW A + R++ AF+P
Sbjct: 184 GARLIVDALVQLERDGV-LPATPQPADGVTYAEKIGKHEAALDWRKPADVLARQVRAFDP 242
Query: 172 FPGAKTYYISYQNKKKFLKIWKAHALSIESTKKPGTILNVNFHNGILVVCGKNVIKLLEL 231
FPG +K+W A ++ PGTI+ G++V CG +++ +L
Sbjct: 243 FPGGVATL-----DGAAIKLWAAEPVAARGEAAPGTIVEAA-PEGVVVACGSGALRVTQL 296
Query: 232 QKNNKKKISATEFING 247
QK K++ A EF+ G
Sbjct: 297 QKPGGKRLPAREFLAG 312
>sp|A8GYH2|FMT_SHEPA Methionyl-tRNA formyltransferase OS=Shewanella pealeana (strain
ATCC 700345 / ANG-SQ1) GN=fmt PE=3 SV=1
Length = 321
Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/312 (26%), Positives = 138/312 (44%), Gaps = 80/312 (25%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
+ +IFAGT AA L L +SEHN++ + T+PD +GRG KL SPVK AL++ I +
Sbjct: 4 LNVIFAGTPDFAARHLQALIDSEHNVIAVYTQPDRPAGRGKKLQASPVKALALENDIAVF 63
Query: 61 QPISLKLNGKYHKIANETHKLLNKIEFDIMIVMG-----------------------ILP 97
QP SL+ + L + DIM+V+ ILP
Sbjct: 64 QPKSLR--------DEDAQAELAALNADIMVVVAYGLILPKVVLDTPRLGCINVHGSILP 115
Query: 98 E----------------DTSLT-LQNKLEKLSKILIIDTIKKIEYDMTK----------- 129
+T +T +Q + + +++ T+ IE + T
Sbjct: 116 RWRGAAPIQRALWAGDTETGVTIMQMDIGLDTGDMLLKTLLPIEDNDTSSTLYEKLAEQG 175
Query: 130 --LFFKPQSNIGESYAPLIKKNE-------------AVLDWSLSAKTIMRKINAFNPFPG 174
+ + I E P K++E A LDWS A + R+I AFNP+P
Sbjct: 176 PTALVEALAGIAEGTLPAEKQDESLANYAEKLSKEEARLDWSKPASALWREIRAFNPWP- 234
Query: 175 AKTYYISYQNKKKFLKIWKAHALSIESTKKPGTILNVNFHNGILVVCGKNVIKLLELQKN 234
Y+++ +K+W++ S+++PGTIL+ + +GI + G+ V+ + ++Q
Sbjct: 235 ----VSHYEHEGNTIKVWQSSVSDETSSQQPGTILSAD-KSGISIATGEGVLTITQMQLP 289
Query: 235 NKKKISATEFIN 246
KK +S + +N
Sbjct: 290 GKKPLSVADILN 301
>sp|Q6D001|FMT_ERWCT Methionyl-tRNA formyltransferase OS=Erwinia carotovora subsp.
atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=fmt
PE=3 SV=1
Length = 315
Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 142/306 (46%), Gaps = 68/306 (22%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFS-------------- 46
++IIFAGT AA LD L +S H +V + T+PD +GRG KL S
Sbjct: 5 LRIIFAGTPDFAARHLDVLLSSGHEVVGVFTQPDRPAGRGNKLTPSPVKVLAEQHSIPVF 64
Query: 47 ------PVKKYALKHSIK------------IIQPI-------SLKLNGKYHKI------- 74
P + A+ ++ + QP+ + ++G +
Sbjct: 65 QPKSLRPAENQAMVEALDADVMVVVAYGLILPQPVLSMPRLGCINVHGSLLPLWRGAAPI 124
Query: 75 -----ANETHKLLNKIEFDIMIVMG---------ILPEDTSLTLQNKLEKLSKILIIDTI 120
A ++ + ++ D+ + G ILP+DTS TL +KL L +++T+
Sbjct: 125 QRALWAGDSETGVTIMQMDVGLDTGAMLHKIACPILPQDTSATLYDKLAALGPRGLLETL 184
Query: 121 KKIEYDMTKLFFKPQSNIGESYAPLIKKNEAVLDWSLSAKTIMRKINAFNPFPGAKTYYI 180
+++ + + Q++ +YA + K EA L+W LSA+ + R I AFNP+P +Y+I
Sbjct: 185 ERLAD--SSAVAEAQNDAFATYAEKLSKEEARLNWLLSAEQLERCIRAFNPWP--VSYFI 240
Query: 181 SYQNKKKFLKIWKAHALSIESTKKPGTILNVNFHNGILVVCGKNVIKLLELQKNNKKKIS 240
++ +K+WKA ++ +PGTIL + GI V ++ + ELQ KK +S
Sbjct: 241 V---DEQPVKVWKAEVIAKSHGSQPGTILQAD-KQGIQVAAADGILNIQELQPAGKKVMS 296
Query: 241 ATEFIN 246
A + +N
Sbjct: 297 AQDLLN 302
>sp|Q8Y3A8|FMT_RALSO Methionyl-tRNA formyltransferase OS=Ralstonia solanacearum (strain
GMI1000) GN=fmt PE=3 SV=1
Length = 327
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 95/173 (54%), Gaps = 12/173 (6%)
Query: 90 MIVMGILP---EDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLI 146
MI M +P DT+ TL + L L ++++ + ++ D + L PQ G +YA I
Sbjct: 160 MIAMEHVPIGLTDTTGTLHDTLAALGGRMVVEALARLAQDGS-LPATPQPAEGVTYAEKI 218
Query: 147 KKNEAVLDWSLSAKTIMRKINAFNPFPGAKTYYISYQNKKKFLKIWKAHALSIE-STKKP 205
K EA LDWS + ++R+++AFNPFPGA S + +K W+A AL + +P
Sbjct: 219 AKEEAALDWSRQSAALLRQVHAFNPFPGA-----SAELDGVSIKFWQAEALPDRPADAQP 273
Query: 206 GTILNVNFHNGILVVCGKNVIKLLELQKNNKKKISATEFINGC-IKNIKYFIS 257
G +L + +G+++ CG +++ +LQK K++ A EF+ G I+ + F S
Sbjct: 274 GAVLAADA-DGVVIACGAGALRVTQLQKPGGKRLPAREFLQGLPIRPGQRFAS 325
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 61/103 (59%), Gaps = 4/103 (3%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSI-KI 59
+++ FAGT A L L+ + IV +L++PD +GRGM L SPVK+YA+ H + +
Sbjct: 5 LRVAFAGTPEFAQIALAALHQAGLPIVAVLSQPDRPAGRGMHLQASPVKQYAVSHGLGPV 64
Query: 60 IQPISLKLNGKYHKIANETHKLLNKIEFDIMIVMG---ILPED 99
+QP SL+ GKY + A L+ + D+M+V ILP++
Sbjct: 65 LQPPSLRRTGKYPQEAAAAIDALSAQQPDVMVVAAYGLILPQE 107
>sp|B2JJU4|FMT_BURP8 Methionyl-tRNA formyltransferase OS=Burkholderia phymatum (strain
DSM 17167 / STM815) GN=fmt PE=3 SV=1
Length = 327
Score = 105 bits (261), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 80/149 (53%), Gaps = 7/149 (4%)
Query: 99 DTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLIKKNEAVLDWSLS 158
DT+ TL ++L + LI+D + ++E KL PQ G +YA I K+EA LDW
Sbjct: 171 DTTATLHDRLAEAGAKLIVDALVELERS-GKLASIPQPAAGATYAEKIAKHEAALDWRRP 229
Query: 159 AKTIMRKINAFNPFPGAKTYYISYQNKKKFLKIWKAHALSIESTKKPGTILNVNFHNGIL 218
A + R++ AF+PFPG LK+W A A+ +PGTI+ V+ G++
Sbjct: 230 AAELARQVRAFDPFPGGAATL-----DGAVLKLWSAAAVDASCKAEPGTIVEVS-PEGVV 283
Query: 219 VVCGKNVIKLLELQKNNKKKISATEFING 247
V CG +++ +LQK K++ +F+ G
Sbjct: 284 VACGDGALRITQLQKPGGKRLPVRDFLAG 312
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 64/102 (62%), Gaps = 3/102 (2%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
+++IFAGT AAA L ++ + + L+LT+PD +GRGMKL SPVK+YA +H I++
Sbjct: 5 LRVIFAGTPEFAAAALAAIHEAGFPVPLVLTQPDRPAGRGMKLQASPVKRYAQEHGIEVA 64
Query: 61 QPISLKLNGKYHKIANETHKLLNKIEFDIMIVMG---ILPED 99
QP SL+ NGKY A + L D+M+V +LP++
Sbjct: 65 QPPSLRRNGKYPAQATAAIEQLRATPHDVMVVAAYGLLLPQE 106
>sp|B8CHB1|FMT_SHEPW Methionyl-tRNA formyltransferase OS=Shewanella piezotolerans
(strain WP3 / JCM 13877) GN=fmt PE=3 SV=1
Length = 321
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/313 (28%), Positives = 141/313 (45%), Gaps = 82/313 (26%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
+ +IFAGT AA L L S+H ++ + T+PD +GRG KL SPVK AL++ I ++
Sbjct: 4 LNVIFAGTPDFAARHLQALIESQHKVIAVYTQPDRPAGRGKKLQSSPVKALALENDIPVL 63
Query: 61 QPISLKLNGKYHKIANET-HKLLNKIEFDIMIVMG-----------------------IL 96
QP SL+ +ET + L + DIM+V+ IL
Sbjct: 64 QPKSLR---------DETAQQELTALNADIMVVVAYGLILPKVVLDTPRLGCINVHGSIL 114
Query: 97 PE----------------DTSLT-LQNKLEKLSKILIIDTIKKIEYDMT------KLFFK 133
P +T +T +Q + + +++ T KIE T KL +
Sbjct: 115 PRWRGAAPIQRALWAGDAETGVTIMQMDIGLDTGDMLLKTQLKIEDTDTSATLYEKLADQ 174
Query: 134 PQSNIGESYA-------PLIKKNEAV-------------LDWSLSAKTIMRKINAFNPFP 173
S + E+ A P K++E++ +DWS SA+ + R+I AFNP+P
Sbjct: 175 GPSALVEALAGIAADTLPAEKQDESLANYAEKLSKEEAQIDWSKSAEALWREIRAFNPWP 234
Query: 174 GAKTYYISYQNKKKFLKIWKAHALSIESTKKPGTILNVNFHNGILVVCGKNVIKLLELQK 233
YQ+ +K+W++H ST GT+++ + NGI V G V+ + +Q
Sbjct: 235 -----VSHYQHAGNTIKVWQSHVSEKTSTAAAGTVISAD-KNGIDVATGNGVLTITSMQL 288
Query: 234 NNKKKISATEFIN 246
KK +S + +N
Sbjct: 289 PGKKPLSVADILN 301
>sp|C6DFR6|FMT_PECCP Methionyl-tRNA formyltransferase OS=Pectobacterium carotovorum
subsp. carotovorum (strain PC1) GN=fmt PE=3 SV=1
Length = 315
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 143/307 (46%), Gaps = 70/307 (22%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFS-------------- 46
++IIFAGT AA LD L +S H +V + T+PD +GRG KL S
Sbjct: 5 LRIIFAGTPDFAARHLDALLSSGHEVVGVFTQPDRPAGRGNKLTPSPVKVLAEQHNIPIF 64
Query: 47 ------PVKKYALKHSIK------------IIQPI-------SLKLNGKYHKI------- 74
P + A+ ++ + QP+ + ++G +
Sbjct: 65 QPKSLRPAENQAMVQALDADVMVVVAYGLILPQPVLSMPRLGCINVHGSLLPLWRGAAPI 124
Query: 75 -----ANETHKLLNKIEFDIMIVMG---------ILPEDTSLTLQNKLEKLSKILIIDTI 120
A ++ + ++ D+ + G ILP+DTS TL +KL +L +++T+
Sbjct: 125 QRALWAGDSETGVTIMQMDVGLDTGAMLHKISCPILPQDTSATLYDKLAELGPRGLLETL 184
Query: 121 KKIEYDMTKLFFKPQSNIGESYAPLIKKNEAVLDWSLSAKTIMRKINAFNPFPGAKTYYI 180
+ + D + + + Q++ +YA + K EA L+W LSA+ + R I AFNP+P +
Sbjct: 185 ELL-ADGSAVA-EAQNDALATYAEKLSKEEARLNWQLSAEQLERCIRAFNPWP------V 236
Query: 181 SYQN-KKKFLKIWKAHALSIESTKKPGTILNVNFHNGILVVCGKNVIKLLELQKNNKKKI 239
SY ++ +K+WKA ++ + PGTIL + GI V ++ + ELQ KK +
Sbjct: 237 SYFTVDEQPVKVWKAEVITTAHSTLPGTILQAD-KQGIQVATAVGILNIQELQPAGKKVM 295
Query: 240 SATEFIN 246
SA + +N
Sbjct: 296 SAQDLLN 302
>sp|Q1LT57|FMT_BAUCH Methionyl-tRNA formyltransferase OS=Baumannia cicadellinicola
subsp. Homalodisca coagulata GN=fmt PE=3 SV=1
Length = 311
Score = 102 bits (254), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 88/313 (28%), Positives = 137/313 (43%), Gaps = 82/313 (26%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
M+I+FAGT AA L L NS + +V +LT+PD +GRG L S VK+ A+KH++ +
Sbjct: 1 MRILFAGTPSFAAHYLSVLINSPYKVVGVLTQPDRAAGRGNYLATSAVKQLAIKHNLPVF 60
Query: 61 QPISLKLNGKYHKIANETHKLLNKIEFDIMIVMG---ILPED------------------ 99
QP L N H ++ I DI++V+ I+P+D
Sbjct: 61 QPEYLHENNGKH--------IIEHISVDILVVVAYGMIIPQDMLMFPKLGGINIHGSLLP 112
Query: 100 ------------------TSLTLQNKLEKLS----------KILIIDTIKKIEYDMTKL- 130
T +T+ + L KIL +DT + + K+
Sbjct: 113 RWRGAAPIQRALWAGDIKTGITIIQMDDGLDTGPILYQVACKILPVDTSTTLYAKLAKIG 172
Query: 131 ----------------FFKPQSNIGESYAPLIKKNEAVLDWSLSAKTIMRKINAFNPFPG 174
+PQ+N +YA + K EA +DW L+A + R I AFNP+P
Sbjct: 173 STALLATLKQIITGSQVIEPQNNKFATYARKLNKKEARIDWQLTANQLERCIRAFNPWP- 231
Query: 175 AKTYYIS-YQNKKKFLKIWKAHALSIESTKKPGTILNVNFHNGILVVCGKNVIKLLELQK 233
IS ++ + +K+W A I PGTIL+V+ GI + GK I + ++Q
Sbjct: 232 -----ISFFKIRDTIIKVWGAQIDDINYHHIPGTILSVD-PVGIKIATGKGAIIITQIQL 285
Query: 234 NNKKKISATEFIN 246
K++ +F+N
Sbjct: 286 AGTKQMPVKDFLN 298
>sp|Q3J6T9|FMT_NITOC Methionyl-tRNA formyltransferase OS=Nitrosococcus oceani (strain
ATCC 19707 / NCIMB 11848) GN=fmt PE=3 SV=1
Length = 323
Score = 101 bits (252), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 87/303 (28%), Positives = 141/303 (46%), Gaps = 65/303 (21%)
Query: 3 IIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQP 62
I+FAGT + AA IL L ++++I + T+PD SGRG + SPVK A+ H + + QP
Sbjct: 7 ILFAGTPVFAAIILRRLLEAKYHIGAVYTQPDRPSGRGRRPTPSPVKDIAITHQLPLYQP 66
Query: 63 ISLKLNGKYHKIANETHKLLNKIEFDIMI---VMGILPEDT-------------SLTLQN 106
+LK G ++A L+ + +++ V+ I P + +Q
Sbjct: 67 ATLKDKGSQAQLAALAPDLMVVAAYGLILPATVLQIPPLGCINVHASLLPRWRGAAPIQR 126
Query: 107 KL---EKLSKILII----------------------DTIKKIEYDMTKL----------- 130
L +K++ I I+ DT + + +L
Sbjct: 127 ALLAGDKVTGISIMQMDAGLDTGPVVHTARYPIHPKDTAATVHDQLAELGAEALLQCLPS 186
Query: 131 FFKPQSNIG----ESYA---PLIKKNEAVLDWSLSAKTIMRKINAFNPFPGAKTYYISYQ 183
+ ++NI ES A P I+K EA LDWS A + R++ AFNP+P A+T Q
Sbjct: 187 LLEKKANIATLQDESQACYAPKIRKEEAWLDWSQPAVLLERQVRAFNPWPVAQT-----Q 241
Query: 184 NKKKFLKIWKAHALSIESTKKPGTILNVNFHNGILVVCGKNVIKLLELQKNNKKKISATE 243
K L++W A AL+ + PGT+L V+ GI V G ++LLE+Q K+ ++ +
Sbjct: 242 IGGKTLRVWSAAALAQTANALPGTLLAVH-KTGIDVATGNGTLRLLEVQLAGKRVMTVQD 300
Query: 244 FIN 246
++N
Sbjct: 301 YLN 303
>sp|Q0AJ02|FMT_NITEC Methionyl-tRNA formyltransferase OS=Nitrosomonas eutropha (strain
C91) GN=fmt PE=3 SV=1
Length = 316
Score = 101 bits (251), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 87/153 (56%), Gaps = 8/153 (5%)
Query: 95 ILPEDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLIKKNEAVLD 154
I P DT+ TL +KL L I++T+ ++ D KL Q N YA I+K+EA +D
Sbjct: 155 IEPHDTAATLHDKLADLGGKCIVETLTLLDQD--KLTPTLQDNASACYAAKIRKSEAEID 212
Query: 155 WSLSAKTIMRKINAFNPFPGAKTYYISYQNKKKFLKIWKAHALSIESTKKPGTILNVNFH 214
W+ + I R I FNP+PGA T +K+W+A+ ++ T++ G I+ + H
Sbjct: 213 WTRDSTHIDRMIRTFNPYPGAFTSL-----HGSMIKLWQANIINRSDTRQAGEIIAAD-H 266
Query: 215 NGILVVCGKNVIKLLELQKNNKKKISATEFING 247
NGI+V CG++ + + LQK KK++A +F+ G
Sbjct: 267 NGIIVACGRDALSINILQKAGGKKLTAAQFLAG 299
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 62/101 (61%), Gaps = 11/101 (10%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
MKIIFAGT + AA L+ + S +I+L+LT+PD +GRGMKL SPVK A +++I ++
Sbjct: 1 MKIIFAGTPVFAAKALEAVQKSGFDILLVLTQPDRPAGRGMKLQASPVKILAQQYNIPLL 60
Query: 61 QPISLKLNGKYHKIANETHKLLNKIEFDIMIVMG---ILPE 98
QP +LK + + L ++ D+MIV ILPE
Sbjct: 61 QPETLK--------SPDIQTQLETLKPDVMIVAAYGLILPE 93
>sp|Q147A4|FMT_BURXL Methionyl-tRNA formyltransferase OS=Burkholderia xenovorans (strain
LB400) GN=fmt PE=3 SV=1
Length = 328
Score = 100 bits (250), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 6/150 (4%)
Query: 98 EDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLIKKNEAVLDWSL 157
+DT+ TL ++L + LI++ + ++E +L PQ G +YA I K+EA LDW
Sbjct: 170 DDTTATLHDRLAQDGAKLIVEALVELER-TGRLAATPQPAEGVTYAEKIGKHEAALDWRR 228
Query: 158 SAKTIMRKINAFNPFPGAKTYYISYQNKKKFLKIWKAHALSIESTKKPGTILNVNFHNGI 217
A + R++ AF+PFPG + +KIW A ++ PGTI V G+
Sbjct: 229 PAAVLARQVRAFDPFPGG----VGTLEDGTSIKIWAAIPADTKAGGAPGTIAEVT-PEGV 283
Query: 218 LVVCGKNVIKLLELQKNNKKKISATEFING 247
+V CG+ ++L +LQK K++ EF+ G
Sbjct: 284 VVACGEGALRLTQLQKPGGKRLPVREFLAG 313
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 62/102 (60%), Gaps = 3/102 (2%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
+++IFAGT AAA L ++ + + L+LT+PD +GRGMKL SPVK+YA +H + +
Sbjct: 5 LRVIFAGTPEFAAAALAAIHGAGFPVPLVLTQPDRPAGRGMKLQASPVKRYAQEHGLAVA 64
Query: 61 QPISLKLNGKYHKIANETHKLLNKIEFDIMIVMG---ILPED 99
QP SL+ GKY + A L D+M+V ILP++
Sbjct: 65 QPPSLRRAGKYPEQAAAAIGQLRATPHDVMVVAAYGLILPQE 106
>sp|A9BS67|FMT_DELAS Methionyl-tRNA formyltransferase OS=Delftia acidovorans (strain DSM
14801 / SPH-1) GN=fmt PE=3 SV=1
Length = 327
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 87/156 (55%), Gaps = 12/156 (7%)
Query: 95 ILPEDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLIKKNEAVLD 154
I +DT+ +L +KL L LI++ ++ L PQ G +YA I+K E+ +D
Sbjct: 163 ITADDTTASLHDKLADLGGRLIVEALEMSA--CGGLPRTPQPAEGVNYAHKIEKAESQID 220
Query: 155 WSLSAKTIMRKINAFNPFPGAKTYYISYQNKKKFLKIWKAH---ALSIESTKKPGTILNV 211
W A+ I R++ AFNPFPG T Y + +K+W+AH A+++ T PGT+L+
Sbjct: 221 WRQDAEAIARRLRAFNPFPGGATQY-----GDESIKVWEAHADPAIAV-GTAAPGTVLSA 274
Query: 212 NFHNGILVVCGKNVIKLLELQKNNKKKISATEFING 247
+G+ V CG V+ + LQ+ K+++A +F+ G
Sbjct: 275 G-ADGVRVACGNGVLCMTLLQRAGGKRLAAGDFLRG 309
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 62/101 (61%), Gaps = 3/101 (2%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
M++IFAGT A L+ L + + L+LT+PD +GRGMKL SPVK+ AL+H I +
Sbjct: 1 MRVIFAGTPEFARVALERLLAAGFTVPLVLTQPDRPAGRGMKLQASPVKQCALEHGIAVA 60
Query: 61 QPISLKLNGKYHKIANETHKLLNKIEFDIMIVMG---ILPE 98
QP SL+L+GKY + A + + D+M+V ILP+
Sbjct: 61 QPRSLRLDGKYPEEAAAARAAIEAAQADVMVVAAYGLILPQ 101
>sp|Q5ZSC5|FMT_LEGPH Methionyl-tRNA formyltransferase OS=Legionella pneumophila subsp.
pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM
7513) GN=fmt PE=3 SV=1
Length = 314
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/312 (28%), Positives = 135/312 (43%), Gaps = 80/312 (25%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
+ ++FAGT LD L S H++ + T+PD +GRG KL SPVK++A+ H I +
Sbjct: 4 LTVVFAGTPEFGLPCLDALIQSRHHLKAVYTQPDRPAGRGRKLQESPVKEWAINHQIPVY 63
Query: 61 QPISLKLNGKYHKIANETHKLLNKIEFDIMIVMG---ILPE------------------- 98
QP LN K + +E L+ ++ D+M+V+ ILP+
Sbjct: 64 QP----LNFKNQEAVDE----LSALKPDVMVVIAYGLILPKAVLEIPRLGCINVHASLLP 115
Query: 99 --------------------------DTSLTLQNKLEKLS-KILIIDTIKKIEYDMTKLF 131
D L L K + + DT + + K+
Sbjct: 116 RWRGASPIQHAILHGDAESGVTIMQMDVGLDTGPMLCKAACPVTSSDTAGSLHDKLAKMS 175
Query: 132 FKPQSNIGES-----------------YAPLIKKNEAVLDWSLSAKTIMRKINAFNPFPG 174
KP ++ E+ YA I K EA ++W SA I RKI AFNP+P
Sbjct: 176 VKPLLDVLEALASNSAQFELQNNELATYAGKINKEEARINWHQSAVEIDRKIRAFNPWPV 235
Query: 175 AKTYYISYQNKKKFLKIWKAHALSIESTKKPGTILNVNFHNGILVVCGKNVIKLLELQKN 234
A T + L+I +A A I ST+ PG ILN++ NG+LV N + + ++Q
Sbjct: 236 AYTLA-----GELMLRIHQAKATDIMSTEMPGMILNID-KNGMLVATSDNALLVEKIQFP 289
Query: 235 NKKKISATEFIN 246
K IS +++N
Sbjct: 290 GAKIISVRDWLN 301
>sp|Q7MYI1|FMT_PHOLL Methionyl-tRNA formyltransferase OS=Photorhabdus luminescens subsp.
laumondii (strain TT01) GN=fmt PE=3 SV=1
Length = 315
Score = 98.6 bits (244), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/306 (25%), Positives = 140/306 (45%), Gaps = 68/306 (22%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPV------------ 48
++I+FAGT AA L+ L S+H +V +LT+PD +GRG KL SPV
Sbjct: 5 LRIVFAGTPDFAARHLEALLMSQHEVVGVLTRPDKPAGRGKKLTPSPVKVLAEERNITVF 64
Query: 49 ----------KKYALKHSIKIIQPIS-----------------LKLNG------------ 69
+++ LK ++ ++ L ++G
Sbjct: 65 QPATLRSEENQQWVLKQQPDVLIVVAYGLILPKVVLNIPELGCLNVHGSLLPRWRGAAPI 124
Query: 70 KYHKIANETHKLLNKIEFDIMIVMG---------ILPEDTSLTLQNKLEKLSKILIIDTI 120
+ A +T + ++ DI + G I PEDTS +L KL + ++ T+
Sbjct: 125 QRSLWAGDTETGVTIMQMDIGLDTGDMLYKARCPITPEDTSASLYEKLANIGPDALLKTL 184
Query: 121 KKIEYDMTKLFFKPQSNIGESYAPLIKKNEAVLDWSLSAKTIMRKINAFNPFPGAKTYYI 180
I ++ + ++ + +YA + K EA ++W LSA + R I AFNP+P +
Sbjct: 185 SLITSGKSQPETQNENLV--TYAEKLSKEEARINWELSATHLERCIRAFNPWPMS----- 237
Query: 181 SYQNKKKFLKIWKAHALSIESTKKPGTILNVNFHNGILVVCGKNVIKLLELQKNNKKKIS 240
++ + + +K+WKA A+ +++ +PGT+L + GI + ++ + +LQ KK +S
Sbjct: 238 FFEMEGQPIKVWKAEAIEEQTSVEPGTVLKAD-KEGIYIATADGILNITQLQPAGKKAMS 296
Query: 241 ATEFIN 246
A +N
Sbjct: 297 AANLLN 302
>sp|Q47K50|FMT_DECAR Methionyl-tRNA formyltransferase OS=Dechloromonas aromatica (strain
RCB) GN=fmt PE=3 SV=1
Length = 307
Score = 98.6 bits (244), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 85/149 (57%), Gaps = 13/149 (8%)
Query: 99 DTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLIKKNEAVLDWSLS 158
DT+ TL ++L +L L+++ + K+ L +PQ G +YA I+K EA++DWS S
Sbjct: 159 DTTATLHDRLAELGARLVVEALGKL-----PLPAEPQPADGVTYAQKIEKAEAMIDWSKS 213
Query: 159 AKTIMRKINAFNPFPGAKTYYISYQNKKKFLKIWKAHALSIESTKKPGTILNVNFHNGIL 218
A + R I AFNPFPGA+ + + + +K+W+A + + G IL V+ N I+
Sbjct: 214 AAELDRHIRAFNPFPGAQALF-----RGQTVKLWQAS--PVAGRGETGAILAVD-KNSII 265
Query: 219 VVCGKNVIKLLELQKNNKKKISATEFING 247
+ CG+ + + ELQK K++ +F+ G
Sbjct: 266 IACGEGALAVTELQKAGGKRLPVQQFLAG 294
Score = 75.1 bits (183), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 57/101 (56%), Gaps = 11/101 (10%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
MK+IFAGT AA L + N+ H + L+LT+PD +GRGM L S VKK AL H I++
Sbjct: 1 MKLIFAGTPEFAAQALQGIVNAGHEVALVLTQPDRPAGRGMALQPSAVKKVALTHGIEVF 60
Query: 61 QPISLKLNGKYHKIANETHKLLNKIEFDIMIVMG---ILPE 98
QP++LK E + + +IM+V ILP+
Sbjct: 61 QPLTLK--------DAEAQARIAAVGAEIMVVAAYGLILPQ 93
>sp|A1JRZ2|FMT_YERE8 Methionyl-tRNA formyltransferase OS=Yersinia enterocolitica
serotype O:8 / biotype 1B (strain 8081) GN=fmt PE=3 SV=1
Length = 315
Score = 98.2 bits (243), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 96/170 (56%), Gaps = 14/170 (8%)
Query: 77 ETHKLLNKIEFDIMIVMGILPEDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFFKPQS 136
+T +L+KIE DI PEDTS TL +KL +L ++ T++++ + + ++
Sbjct: 147 DTGDMLHKIECDIQ------PEDTSATLYDKLAQLGPQGLLVTLQQLAEGSAQPEVQDEA 200
Query: 137 NIGESYAPLIKKNEAVLDWSLSAKTIMRKINAFNPFPGAKTYYISYQNKKKFLKIWKAHA 196
+ +YA + K EA LDWSLSA + R I AFNP+P +Y++ ++ +K+W+A
Sbjct: 201 QV--TYAEKLSKEEAKLDWSLSAVQLERCIRAFNPWP--VSYFVV---DEQPIKVWQAQV 253
Query: 197 LSIESTKKPGTILNVNFHNGILVVCGKNVIKLLELQKNNKKKISATEFIN 246
L+ PGTI++ + H GI V V+ + +LQ KK +SA + +N
Sbjct: 254 LATVDNAAPGTIIHADKH-GIQVATADGVLNITQLQPAGKKAMSAADLLN 302
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 57/100 (57%), Gaps = 11/100 (11%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
++IIFAGT AA L L +S+H IV + T+PD +GRG KL SPVK A +H I I
Sbjct: 5 LRIIFAGTPDFAARHLGALLSSQHQIVGVFTQPDRPAGRGNKLTPSPVKVLAEQHDIPIF 64
Query: 61 QPISLKLNGKYHKIANETHKLLNKIEFDIMIVMG---ILP 97
QP SL+ H +A+ + DIM+V+ ILP
Sbjct: 65 QPKSLRPEENQHLVAD--------LNADIMVVVAYGLILP 96
>sp|A4T0M5|FMT_POLSQ Methionyl-tRNA formyltransferase OS=Polynucleobacter necessarius
subsp. asymbioticus (strain DSM 18221 / CIP 109841 /
QLW-P1DMWA-1) GN=fmt PE=3 SV=1
Length = 332
Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 87/151 (57%), Gaps = 8/151 (5%)
Query: 93 MGILPEDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLIKKNEAV 152
+ I ++TS +L ++L L LI+D + ++ D L PQ +G +YA I K EA
Sbjct: 168 LAIASDETSSSLHDRLAALGAGLIVDALSLLQ-DGKGLSRTPQPALGVTYAEKILKAEAD 226
Query: 153 LDWSLSAKTIMRKINAFNPFPGAKTYYISYQNKKKFLKIWKAHALSIESTKKPGTILNV- 211
LDWSLSA+ I +I AFNPFPGA IS N + +K+WK+ ++ + G I V
Sbjct: 227 LDWSLSAREIDARIRAFNPFPGA----ISNLNAET-IKLWKSRLADEDAYSEAGPIGAVI 281
Query: 212 NF-HNGILVVCGKNVIKLLELQKNNKKKISA 241
F +G+ V CG VI++LE QK KK++A
Sbjct: 282 GFSEDGVFVRCGDGVIEILEAQKPGGKKMNA 312
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 66/105 (62%), Gaps = 6/105 (5%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
MKI+FAGT AA + ++ + H IVL LT+PD +GRGM L SPVK++AL+ +I ++
Sbjct: 1 MKIVFAGTPEFAAQAMRAIHAAGHEIVLALTQPDRRAGRGMHLQASPVKEFALEKNIPVL 60
Query: 61 QPISLKLNGKY---HKIANETHKLLNKIEFDIMIVMG---ILPED 99
QP +L+ N K + A + ++ L FD M+V+ ILP++
Sbjct: 61 QPETLRRNNKDPEKQQQAEDAYRALINTNFDAMVVVAYGLILPQE 105
>sp|Q1RJ22|FMT_RICBR Methionyl-tRNA formyltransferase OS=Rickettsia bellii (strain
RML369-C) GN=fmt PE=3 SV=1
Length = 304
Score = 95.1 bits (235), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 84/311 (27%), Positives = 131/311 (42%), Gaps = 81/311 (26%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
MKIIF GT A L L NS H +V T+P GRG+ SP+ + A + I +
Sbjct: 1 MKIIFMGTPEFAVPALTKLINSNHKVVAAFTQPPKAKGRGLSETKSPIHQLADEAQIPVY 60
Query: 61 QPISLKLNGKYHKIANETHKLLNKIEFDIMIVMG---ILPED------------------ 99
P +L+ E L+N I+ DI++V+ I+P++
Sbjct: 61 TPTTLR--------NEEAANLINNIDADIIVVIAYGFIIPQNILDAKKYGCLNIHPSDLP 112
Query: 100 ---TSLTLQNKL---EKLSKILII---------DTIKKIEYDM----------------- 127
+ LQ + +K S + I+ D + K ++D+
Sbjct: 113 RHRGAAPLQRTIIEGDKTSSVCIMQMDAGLDTGDILMKEDFDLPKKITLQELHDKCANLG 172
Query: 128 -----------TKLFFKPQSNIGESYAPLIKKNEAVLDWSLSAKTIMRKINAFNPFPGAK 176
K+ KPQSN G +Y + K E ++W SA +I K+ NP+PG
Sbjct: 173 AELLIKTLANIDKIVPKPQSNEGVTYTHKLTKEEGRVNWQDSAFSINCKVRGMNPWPGV- 231
Query: 177 TYYISYQNKKKFLKIWKAHALSIESTKKPGTILNVNFHNGILVVCGKNVIKLLELQKNNK 236
Y Y +K +KI +A E PGTI+N N + CGK ++ + +LQ+ K
Sbjct: 232 --YFKYNDKT--IKILEAEYSDEEHNFTPGTIINKNLE----IACGKGILMIKKLQQEGK 283
Query: 237 KKISATEFING 247
K ++ EF+ G
Sbjct: 284 KVLNIEEFLRG 294
>sp|B1JJH7|FMT_YERPY Methionyl-tRNA formyltransferase OS=Yersinia pseudotuberculosis
serotype O:3 (strain YPIII) GN=fmt PE=3 SV=1
Length = 315
Score = 94.0 bits (232), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 94/173 (54%), Gaps = 14/173 (8%)
Query: 74 IANETHKLLNKIEFDIMIVMGILPEDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFFK 133
I +T +L+KIE I PEDTS TL +KL +L ++ T++++ +
Sbjct: 144 IGLDTGAMLHKIE------CAIQPEDTSATLYDKLAQLGPQGLLITLQQLAAGTA--LAE 195
Query: 134 PQSNIGESYAPLIKKNEAVLDWSLSAKTIMRKINAFNPFPGAKTYYISYQNKKKFLKIWK 193
Q+ +YA + K EA LDW+LSA + R I AFNP+P +Y+I ++ +K+W+
Sbjct: 196 VQNETQATYAEKLSKEEAKLDWTLSATQLERCIRAFNPWP--VSYFIV---DEQPIKVWQ 250
Query: 194 AHALSIESTKKPGTILNVNFHNGILVVCGKNVIKLLELQKNNKKKISATEFIN 246
A L +PGTI++ + H GI V V+ + +LQ KK +SA + +N
Sbjct: 251 AQVLPAGEDAEPGTIIHADKH-GIQVATADGVLNITQLQPAGKKAMSAADLLN 302
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 56/100 (56%), Gaps = 11/100 (11%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
++IIFAGT AA L L +S+H IV + T+PD +GRG KL SPVK A H I +
Sbjct: 5 LRIIFAGTPDFAARHLGALLSSQHKIVGVFTQPDRPAGRGNKLTPSPVKILAEHHGIPVF 64
Query: 61 QPISLKLNGKYHKIANETHKLLNKIEFDIMIVMG---ILP 97
QP SL+ H +A+ + DIM+V+ ILP
Sbjct: 65 QPKSLRPEENQHLVAD--------LNADIMVVVAYGLILP 96
>sp|Q664V3|FMT_YERPS Methionyl-tRNA formyltransferase OS=Yersinia pseudotuberculosis
serotype I (strain IP32953) GN=fmt PE=3 SV=1
Length = 315
Score = 94.0 bits (232), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 94/173 (54%), Gaps = 14/173 (8%)
Query: 74 IANETHKLLNKIEFDIMIVMGILPEDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFFK 133
I +T +L+KIE I PEDTS TL +KL +L ++ T++++ +
Sbjct: 144 IGLDTGAMLHKIE------CAIQPEDTSATLYDKLAQLGPQGLLITLQQLAAGTA--LAE 195
Query: 134 PQSNIGESYAPLIKKNEAVLDWSLSAKTIMRKINAFNPFPGAKTYYISYQNKKKFLKIWK 193
Q+ +YA + K EA LDW+LSA + R I AFNP+P +Y+I ++ +K+W+
Sbjct: 196 VQNETQATYAEKLSKEEAKLDWTLSATQLERCIRAFNPWP--VSYFIV---DEQPIKVWQ 250
Query: 194 AHALSIESTKKPGTILNVNFHNGILVVCGKNVIKLLELQKNNKKKISATEFIN 246
A L +PGTI++ + H GI V V+ + +LQ KK +SA + +N
Sbjct: 251 AQVLPAGEDAEPGTIIHADKH-GIQVATADGVLNITQLQPAGKKAMSAADLLN 302
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 56/100 (56%), Gaps = 11/100 (11%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
++IIFAGT AA L L +S+H IV + T+PD +GRG KL SPVK A H I +
Sbjct: 5 LRIIFAGTPDFAARHLGALLSSQHKIVGVFTQPDRPAGRGNKLTPSPVKILAEHHGIPVF 64
Query: 61 QPISLKLNGKYHKIANETHKLLNKIEFDIMIVMG---ILP 97
QP SL+ H +A+ + DIM+V+ ILP
Sbjct: 65 QPKSLRPEENQHLVAD--------LNADIMVVVAYGLILP 96
>sp|A4TH22|FMT_YERPP Methionyl-tRNA formyltransferase OS=Yersinia pestis (strain
Pestoides F) GN=fmt PE=3 SV=1
Length = 315
Score = 94.0 bits (232), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 94/173 (54%), Gaps = 14/173 (8%)
Query: 74 IANETHKLLNKIEFDIMIVMGILPEDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFFK 133
I +T +L+KIE I PEDTS TL +KL +L ++ T++++ +
Sbjct: 144 IGLDTGAMLHKIE------CAIQPEDTSATLYDKLAQLGPQGLLITLQQLAAGTA--LAE 195
Query: 134 PQSNIGESYAPLIKKNEAVLDWSLSAKTIMRKINAFNPFPGAKTYYISYQNKKKFLKIWK 193
Q+ +YA + K EA LDW+LSA + R I AFNP+P +Y+I ++ +K+W+
Sbjct: 196 VQNETQATYAEKLSKEEAKLDWTLSATQLERCIRAFNPWP--VSYFIV---DEQPIKVWQ 250
Query: 194 AHALSIESTKKPGTILNVNFHNGILVVCGKNVIKLLELQKNNKKKISATEFIN 246
A L +PGTI++ + H GI V V+ + +LQ KK +SA + +N
Sbjct: 251 AQVLPAGEDAEPGTIIHADKH-GIQVATADGVLNITQLQPAGKKAMSAADLLN 302
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 56/100 (56%), Gaps = 11/100 (11%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
++IIFAGT AA L L +S+H IV + T+PD +GRG KL SPVK A H I +
Sbjct: 5 LRIIFAGTPDFAARHLGALLSSQHKIVGVFTQPDRPAGRGNKLTPSPVKILAEHHGIPVF 64
Query: 61 QPISLKLNGKYHKIANETHKLLNKIEFDIMIVMG---ILP 97
QP SL+ H +A+ + DIM+V+ ILP
Sbjct: 65 QPKSLRPEENQHLVAD--------LNADIMVVVAYGLILP 96
>sp|Q1CCX5|FMT_YERPN Methionyl-tRNA formyltransferase OS=Yersinia pestis bv. Antiqua
(strain Nepal516) GN=fmt PE=3 SV=1
Length = 315
Score = 94.0 bits (232), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 94/173 (54%), Gaps = 14/173 (8%)
Query: 74 IANETHKLLNKIEFDIMIVMGILPEDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFFK 133
I +T +L+KIE I PEDTS TL +KL +L ++ T++++ +
Sbjct: 144 IGLDTGAMLHKIE------CAIQPEDTSATLYDKLAQLGPQGLLITLQQLAAGTA--LAE 195
Query: 134 PQSNIGESYAPLIKKNEAVLDWSLSAKTIMRKINAFNPFPGAKTYYISYQNKKKFLKIWK 193
Q+ +YA + K EA LDW+LSA + R I AFNP+P +Y+I ++ +K+W+
Sbjct: 196 VQNETQATYAEKLSKEEAKLDWTLSATQLERCIRAFNPWP--VSYFIV---DEQPIKVWQ 250
Query: 194 AHALSIESTKKPGTILNVNFHNGILVVCGKNVIKLLELQKNNKKKISATEFIN 246
A L +PGTI++ + H GI V V+ + +LQ KK +SA + +N
Sbjct: 251 AQVLPAGEDAEPGTIIHADKH-GIQVATADGVLNITQLQPAGKKAMSAADLLN 302
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 56/100 (56%), Gaps = 11/100 (11%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
++IIFAGT AA L L +S+H IV + T+PD +GRG KL SPVK A H I +
Sbjct: 5 LRIIFAGTPDFAARHLGALLSSQHKIVGVFTQPDRPAGRGNKLTPSPVKILAEHHGIPVF 64
Query: 61 QPISLKLNGKYHKIANETHKLLNKIEFDIMIVMG---ILP 97
QP SL+ H +A+ + DIM+V+ ILP
Sbjct: 65 QPKSLRPEENQHLVAD--------LNADIMVVVAYGLILP 96
>sp|A9R926|FMT_YERPG Methionyl-tRNA formyltransferase OS=Yersinia pestis bv. Antiqua
(strain Angola) GN=fmt PE=3 SV=1
Length = 315
Score = 94.0 bits (232), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 94/173 (54%), Gaps = 14/173 (8%)
Query: 74 IANETHKLLNKIEFDIMIVMGILPEDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFFK 133
I +T +L+KIE I PEDTS TL +KL +L ++ T++++ +
Sbjct: 144 IGLDTGAMLHKIE------CAIQPEDTSATLYDKLAQLGPQGLLITLQQLAAGTA--LAE 195
Query: 134 PQSNIGESYAPLIKKNEAVLDWSLSAKTIMRKINAFNPFPGAKTYYISYQNKKKFLKIWK 193
Q+ +YA + K EA LDW+LSA + R I AFNP+P +Y+I ++ +K+W+
Sbjct: 196 VQNETQATYAEKLSKEEAKLDWTLSATQLERCIRAFNPWP--VSYFIV---DEQPIKVWQ 250
Query: 194 AHALSIESTKKPGTILNVNFHNGILVVCGKNVIKLLELQKNNKKKISATEFIN 246
A L +PGTI++ + H GI V V+ + +LQ KK +SA + +N
Sbjct: 251 AQVLPAGEDAEPGTIIHADKH-GIQVATADGVLNITQLQPAGKKAMSAADLLN 302
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 56/100 (56%), Gaps = 11/100 (11%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
++IIFAGT AA L L +S+H IV + T+PD +GRG KL SPVK A H I +
Sbjct: 5 LRIIFAGTPDFAARHLGALLSSQHKIVGVFTQPDRPAGRGNKLTPSPVKILAEHHGIPVF 64
Query: 61 QPISLKLNGKYHKIANETHKLLNKIEFDIMIVMG---ILP 97
QP SL+ H +A+ + DIM+V+ ILP
Sbjct: 65 QPKSLRPEENQHLVAD--------LNADIMVVVAYGLILP 96
>sp|Q8ZJ80|FMT_YERPE Methionyl-tRNA formyltransferase OS=Yersinia pestis GN=fmt PE=1
SV=1
Length = 315
Score = 94.0 bits (232), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 94/173 (54%), Gaps = 14/173 (8%)
Query: 74 IANETHKLLNKIEFDIMIVMGILPEDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFFK 133
I +T +L+KIE I PEDTS TL +KL +L ++ T++++ +
Sbjct: 144 IGLDTGAMLHKIE------CAIQPEDTSATLYDKLAQLGPQGLLITLQQLAAGTA--LAE 195
Query: 134 PQSNIGESYAPLIKKNEAVLDWSLSAKTIMRKINAFNPFPGAKTYYISYQNKKKFLKIWK 193
Q+ +YA + K EA LDW+LSA + R I AFNP+P +Y+I ++ +K+W+
Sbjct: 196 VQNETQATYAEKLSKEEAKLDWTLSATQLERCIRAFNPWP--VSYFIV---DEQPIKVWQ 250
Query: 194 AHALSIESTKKPGTILNVNFHNGILVVCGKNVIKLLELQKNNKKKISATEFIN 246
A L +PGTI++ + H GI V V+ + +LQ KK +SA + +N
Sbjct: 251 AQVLPAGEDAEPGTIIHADKH-GIQVATADGVLNITQLQPAGKKAMSAADLLN 302
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 56/100 (56%), Gaps = 11/100 (11%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
++IIFAGT AA L L +S+H IV + T+PD +GRG KL SPVK A H I +
Sbjct: 5 LRIIFAGTPDFAARHLGALLSSQHKIVGVFTQPDRPAGRGNKLTPSPVKILAEHHGIPVF 64
Query: 61 QPISLKLNGKYHKIANETHKLLNKIEFDIMIVMG---ILP 97
QP SL+ H +A+ + DIM+V+ ILP
Sbjct: 65 QPKSLRPEENQHLVAD--------LNADIMVVVAYGLILP 96
>sp|B2K505|FMT_YERPB Methionyl-tRNA formyltransferase OS=Yersinia pseudotuberculosis
serotype IB (strain PB1/+) GN=fmt PE=3 SV=1
Length = 315
Score = 94.0 bits (232), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 94/173 (54%), Gaps = 14/173 (8%)
Query: 74 IANETHKLLNKIEFDIMIVMGILPEDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFFK 133
I +T +L+KIE I PEDTS TL +KL +L ++ T++++ +
Sbjct: 144 IGLDTGAMLHKIE------CAIQPEDTSATLYDKLAQLGPQGLLITLQQLAAGTA--LAE 195
Query: 134 PQSNIGESYAPLIKKNEAVLDWSLSAKTIMRKINAFNPFPGAKTYYISYQNKKKFLKIWK 193
Q+ +YA + K EA LDW+LSA + R I AFNP+P +Y+I ++ +K+W+
Sbjct: 196 VQNETQATYAEKLSKEEAKLDWTLSATQLERCIRAFNPWP--VSYFIV---DEQPIKVWQ 250
Query: 194 AHALSIESTKKPGTILNVNFHNGILVVCGKNVIKLLELQKNNKKKISATEFIN 246
A L +PGTI++ + H GI V V+ + +LQ KK +SA + +N
Sbjct: 251 AQVLPAGEDAEPGTIIHADKH-GIQVATADGVLNITQLQPAGKKAMSAADLLN 302
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 56/100 (56%), Gaps = 11/100 (11%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
++IIFAGT AA L L +S+H IV + T+PD +GRG KL SPVK A H I +
Sbjct: 5 LRIIFAGTPDFAARHLGALLSSQHKIVGVFTQPDRPAGRGNKLTPSPVKILAEHHGIPVF 64
Query: 61 QPISLKLNGKYHKIANETHKLLNKIEFDIMIVMG---ILP 97
QP SL+ H +A+ + DIM+V+ ILP
Sbjct: 65 QPKSLRPEENQHLVAD--------LNADIMVVVAYGLILP 96
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,513,319
Number of Sequences: 539616
Number of extensions: 3718370
Number of successful extensions: 12887
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 129
Number of HSP's that attempted gapping in prelim test: 10854
Number of HSP's gapped (non-prelim): 1437
length of query: 258
length of database: 191,569,459
effective HSP length: 115
effective length of query: 143
effective length of database: 129,513,619
effective search space: 18520447517
effective search space used: 18520447517
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)