Query psy5230
Match_columns 258
No_of_seqs 179 out of 1247
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 21:00:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5230.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5230hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0223 Fmt Methionyl-tRNA for 100.0 1.2E-64 2.5E-69 440.1 28.6 238 1-254 2-307 (307)
2 TIGR00460 fmt methionyl-tRNA f 100.0 1.2E-56 2.6E-61 397.8 30.0 241 1-257 1-311 (313)
3 PRK00005 fmt methionyl-tRNA fo 100.0 2.5E-56 5.4E-61 395.4 30.7 241 1-257 1-309 (309)
4 PLN02285 methionyl-tRNA formyl 100.0 5.9E-53 1.3E-57 376.2 27.7 239 1-251 7-332 (334)
5 PRK06988 putative formyltransf 100.0 2.3E-51 5E-56 363.5 28.6 229 1-250 3-308 (312)
6 PRK08125 bifunctional UDP-gluc 100.0 6.2E-51 1.4E-55 394.5 29.5 236 1-257 1-305 (660)
7 KOG2452|consensus 100.0 1.7E-28 3.7E-33 219.0 16.5 229 1-249 1-310 (881)
8 PF02911 Formyl_trans_C: Formy 100.0 1.3E-28 2.9E-33 183.3 10.3 99 145-249 1-100 (100)
9 PRK07579 hypothetical protein; 99.9 6.7E-24 1.5E-28 179.8 17.1 92 94-191 138-233 (245)
10 KOG3082|consensus 99.8 3.7E-21 8E-26 163.9 3.1 231 1-250 7-320 (338)
11 PF00551 Formyl_trans_N: Formy 99.5 9.4E-15 2E-19 120.1 3.3 102 1-120 1-181 (181)
12 PRK05647 purN phosphoribosylgl 99.4 6.9E-12 1.5E-16 104.5 13.1 116 1-131 2-191 (200)
13 TIGR00639 PurN phosphoribosylg 99.4 1.2E-11 2.5E-16 102.3 14.2 114 1-129 1-188 (190)
14 PRK06027 purU formyltetrahydro 99.1 5.8E-10 1.2E-14 97.9 12.0 111 1-130 90-275 (286)
15 PLN02331 phosphoribosylglycina 99.1 2.5E-09 5.4E-14 89.5 13.8 114 2-130 1-193 (207)
16 PRK13011 formyltetrahydrofolat 99.1 1.2E-09 2.5E-14 95.9 12.0 111 1-130 90-275 (286)
17 PLN02828 formyltetrahydrofolat 98.9 5.2E-08 1.1E-12 84.4 14.3 108 1-125 71-254 (268)
18 TIGR00655 PurU formyltetrahydr 98.8 4.9E-08 1.1E-12 85.4 11.8 111 1-130 85-270 (280)
19 PRK13010 purU formyltetrahydro 98.8 6.9E-08 1.5E-12 84.8 11.2 111 1-130 94-279 (289)
20 COG0299 PurN Folate-dependent 98.6 1.9E-06 4.1E-11 70.5 13.4 116 1-131 1-190 (200)
21 KOG3076|consensus 97.6 0.0028 6E-08 51.6 13.2 111 3-132 11-199 (206)
22 PF01408 GFO_IDH_MocA: Oxidore 96.8 0.0059 1.3E-07 46.0 7.2 67 1-93 1-69 (120)
23 COG0788 PurU Formyltetrahydrof 95.7 0.15 3.2E-06 44.0 10.3 78 1-93 91-173 (287)
24 COG0569 TrkA K+ transport syst 95.1 0.091 2E-06 44.6 7.2 72 1-93 1-73 (225)
25 PF03807 F420_oxidored: NADP o 95.0 0.14 3.1E-06 36.8 7.1 49 2-61 1-52 (96)
26 TIGR01761 thiaz-red thiazoliny 94.7 0.046 1E-06 49.4 4.7 48 1-60 4-53 (343)
27 TIGR00715 precor6x_red precorr 94.0 0.42 9.1E-06 41.4 8.9 89 1-114 1-90 (256)
28 PF02254 TrkA_N: TrkA-N domain 92.3 0.8 1.7E-05 33.9 7.3 69 3-93 1-69 (116)
29 COG2910 Putative NADH-flavin r 92.3 1.8 3.8E-05 35.7 9.5 35 1-35 1-36 (211)
30 PF05368 NmrA: NmrA-like famil 92.1 2.6 5.6E-05 35.3 11.0 91 3-114 1-92 (233)
31 PF13460 NAD_binding_10: NADH( 92.1 0.56 1.2E-05 37.6 6.6 66 3-93 1-67 (183)
32 KOG2741|consensus 91.6 0.47 1E-05 42.6 5.9 70 1-93 7-79 (351)
33 PRK13304 L-aspartate dehydroge 91.3 1 2.2E-05 39.1 7.8 49 1-60 2-52 (265)
34 PF00289 CPSase_L_chain: Carba 91.0 0.21 4.6E-06 37.5 2.8 35 2-36 4-38 (110)
35 PRK09496 trkA potassium transp 90.5 1.1 2.3E-05 41.7 7.7 72 1-93 1-72 (453)
36 PF01113 DapB_N: Dihydrodipico 90.1 0.78 1.7E-05 35.0 5.3 34 1-34 1-36 (124)
37 CHL00073 chlN photochlorophyll 89.9 2.1 4.5E-05 40.3 8.9 82 2-93 316-398 (457)
38 PF00070 Pyr_redox: Pyridine n 89.8 1.3 2.8E-05 30.7 5.9 59 2-62 1-60 (80)
39 PF10686 DUF2493: Protein of u 89.3 1.7 3.7E-05 29.9 5.9 54 1-61 4-62 (71)
40 TIGR00290 MJ0570_dom MJ0570-re 88.9 3.3 7.1E-05 35.2 8.6 94 1-99 1-98 (223)
41 PRK08300 acetaldehyde dehydrog 88.9 1.7 3.7E-05 38.5 7.2 50 1-60 5-55 (302)
42 PLN02688 pyrroline-5-carboxyla 88.6 2.5 5.5E-05 36.3 8.1 24 1-24 1-24 (266)
43 TIGR03215 ac_ald_DH_ac acetald 88.6 2.6 5.7E-05 37.1 8.1 69 1-93 2-71 (285)
44 PRK09288 purT phosphoribosylgl 88.5 2.4 5.2E-05 38.7 8.3 35 1-35 13-47 (395)
45 PRK07634 pyrroline-5-carboxyla 88.2 2.9 6.2E-05 35.4 8.0 49 1-59 5-56 (245)
46 TIGR03023 WcaJ_sugtrans Undeca 88.1 1.7 3.8E-05 40.6 7.2 86 2-113 130-219 (451)
47 COG0373 HemA Glutamyl-tRNA red 88.1 6 0.00013 36.7 10.3 49 2-61 180-228 (414)
48 CHL00194 ycf39 Ycf39; Provisio 88.0 2.6 5.5E-05 37.3 7.9 30 1-30 1-31 (317)
49 COG0673 MviM Predicted dehydro 87.7 2.2 4.8E-05 37.9 7.4 68 1-93 4-74 (342)
50 TIGR00289 conserved hypothetic 87.7 4.9 0.00011 34.1 8.9 94 1-99 1-98 (222)
51 PRK08462 biotin carboxylase; V 87.5 1.5 3.3E-05 40.9 6.3 62 2-63 6-83 (445)
52 PRK00726 murG undecaprenyldiph 87.2 2.5 5.5E-05 37.7 7.4 81 1-93 2-98 (357)
53 cd01974 Nitrogenase_MoFe_beta 87.2 2.3 5.1E-05 39.6 7.4 76 2-93 305-384 (435)
54 PF04321 RmlD_sub_bind: RmlD s 87.1 0.98 2.1E-05 39.6 4.5 29 1-29 1-30 (286)
55 PF02844 GARS_N: Phosphoribosy 87.0 0.46 9.9E-06 35.1 2.0 33 1-34 1-33 (100)
56 PRK02910 light-independent pro 86.6 17 0.00036 34.9 13.0 73 2-92 295-368 (519)
57 COG0345 ProC Pyrroline-5-carbo 86.5 1.6 3.4E-05 38.1 5.4 49 1-59 2-52 (266)
58 PF01488 Shikimate_DH: Shikima 86.1 3.8 8.3E-05 31.6 7.0 66 2-93 14-82 (135)
59 COG2084 MmsB 3-hydroxyisobutyr 86.0 7.8 0.00017 34.2 9.5 30 1-31 1-30 (286)
60 PRK07679 pyrroline-5-carboxyla 85.9 2.8 6.1E-05 36.5 6.8 23 1-23 4-26 (279)
61 PRK10675 UDP-galactose-4-epime 85.9 13 0.00028 32.8 11.2 29 1-29 1-30 (338)
62 PRK13940 glutamyl-tRNA reducta 85.5 10 0.00022 35.2 10.6 44 2-56 183-226 (414)
63 COG3804 Uncharacterized conser 85.3 2.2 4.8E-05 37.4 5.6 39 1-39 3-42 (350)
64 PRK13302 putative L-aspartate 84.5 4 8.7E-05 35.6 7.1 46 1-57 7-54 (271)
65 TIGR03025 EPS_sugtrans exopoly 84.5 2.6 5.6E-05 39.4 6.3 86 2-113 127-216 (445)
66 PRK07178 pyruvate carboxylase 84.5 3.1 6.7E-05 39.3 6.8 62 2-63 4-80 (472)
67 PRK09496 trkA potassium transp 84.4 4.7 0.0001 37.4 8.0 71 1-92 232-303 (453)
68 TIGR01278 DPOR_BchB light-inde 84.3 19 0.00041 34.4 12.1 74 2-93 297-371 (511)
69 PRK06476 pyrroline-5-carboxyla 84.2 4.9 0.00011 34.5 7.5 26 1-26 1-26 (258)
70 PRK07680 late competence prote 84.2 6.4 0.00014 34.1 8.3 24 1-24 1-24 (273)
71 COG4693 PchG Oxidoreductase (N 84.2 4.3 9.3E-05 35.6 6.8 86 2-118 6-97 (361)
72 PRK06270 homoserine dehydrogen 84.2 5.9 0.00013 35.8 8.2 81 1-93 3-96 (341)
73 cd01075 NAD_bind_Leu_Phe_Val_D 84.1 10 0.00022 31.4 9.1 48 1-60 29-76 (200)
74 TIGR03022 WbaP_sugtrans Undeca 83.7 4.2 9.2E-05 38.0 7.4 66 2-93 127-195 (456)
75 TIGR01133 murG undecaprenyldip 83.3 3.4 7.4E-05 36.5 6.4 81 1-93 1-97 (348)
76 cd05213 NAD_bind_Glutamyl_tRNA 83.2 6.5 0.00014 34.9 8.0 67 1-93 179-245 (311)
77 cd03466 Nitrogenase_NifN_2 Nit 83.0 4.7 0.0001 37.6 7.3 76 2-93 302-379 (429)
78 PRK12491 pyrroline-5-carboxyla 82.6 7.3 0.00016 33.9 8.0 24 1-24 3-26 (272)
79 cd01965 Nitrogenase_MoFe_beta_ 82.6 4.8 0.0001 37.4 7.2 76 2-93 301-378 (428)
80 PRK06111 acetyl-CoA carboxylas 82.6 2.2 4.7E-05 39.8 4.9 63 1-63 3-81 (450)
81 cd01994 Alpha_ANH_like_IV This 82.2 14 0.0003 30.5 9.1 86 7-96 8-98 (194)
82 KOG0780|consensus 82.1 21 0.00044 33.1 10.5 66 19-93 125-190 (483)
83 PF01902 ATP_bind_4: ATP-bindi 81.9 4 8.7E-05 34.5 5.8 91 1-96 1-95 (218)
84 PRK14619 NAD(P)H-dependent gly 81.8 6.4 0.00014 34.8 7.4 51 1-62 5-55 (308)
85 PF04007 DUF354: Protein of un 81.6 6.9 0.00015 35.3 7.5 81 1-93 1-90 (335)
86 PRK06718 precorrin-2 dehydroge 81.3 28 0.00061 28.8 10.7 30 1-31 11-40 (202)
87 PF10727 Rossmann-like: Rossma 81.2 1.1 2.4E-05 34.5 2.0 32 1-32 11-42 (127)
88 PRK09599 6-phosphogluconate de 81.2 6.5 0.00014 34.6 7.2 27 1-27 1-27 (301)
89 PF03721 UDPG_MGDP_dh_N: UDP-g 80.9 2.3 4.9E-05 34.9 3.9 32 1-32 1-32 (185)
90 PRK08463 acetyl-CoA carboxylas 80.8 3.3 7.2E-05 39.1 5.5 61 2-62 4-79 (478)
91 PRK03659 glutathione-regulated 79.7 6.8 0.00015 38.2 7.4 50 1-63 401-450 (601)
92 TIGR01279 DPOR_bchN light-inde 79.6 4.5 9.7E-05 37.4 5.8 74 2-92 276-349 (407)
93 PF03446 NAD_binding_2: NAD bi 79.2 2.9 6.4E-05 33.2 4.0 27 1-27 2-28 (163)
94 TIGR01142 purT phosphoribosylg 79.1 7.3 0.00016 35.3 7.1 61 2-62 1-68 (380)
95 PRK13303 L-aspartate dehydroge 79.0 10 0.00022 32.9 7.6 32 1-32 2-34 (265)
96 COG0052 RpsB Ribosomal protein 79.0 25 0.00054 30.3 9.6 42 11-61 52-93 (252)
97 PLN02256 arogenate dehydrogena 78.6 10 0.00022 33.7 7.6 45 1-59 37-81 (304)
98 COG1748 LYS9 Saccharopine dehy 78.6 5.7 0.00012 36.6 6.1 71 1-93 2-75 (389)
99 PRK05472 redox-sensing transcr 78.3 7.9 0.00017 32.3 6.5 32 1-32 85-118 (213)
100 PRK08655 prephenate dehydrogen 78.3 9.6 0.00021 35.7 7.7 46 1-58 1-47 (437)
101 cd05292 LDH_2 A subgroup of L- 78.0 33 0.00072 30.4 10.7 31 1-31 1-32 (308)
102 COG0394 Wzb Protein-tyrosine-p 77.5 9.7 0.00021 29.7 6.3 73 1-93 3-83 (139)
103 PLN00016 RNA-binding protein; 77.4 8.6 0.00019 34.9 7.0 32 1-32 53-89 (378)
104 TIGR01915 npdG NADPH-dependent 77.2 3.8 8.3E-05 34.3 4.3 28 1-28 1-29 (219)
105 PRK10126 tyrosine phosphatase; 77.2 7.1 0.00015 30.6 5.6 72 1-93 3-82 (147)
106 PRK04148 hypothetical protein; 77.2 12 0.00026 29.1 6.6 52 1-66 18-69 (134)
107 PRK08591 acetyl-CoA carboxylas 77.0 16 0.00035 34.0 8.8 34 2-35 4-37 (451)
108 PRK10669 putative cation:proto 77.0 9.5 0.00021 36.8 7.5 70 2-93 419-488 (558)
109 PRK08654 pyruvate carboxylase 76.9 8.8 0.00019 36.6 7.1 61 2-62 4-80 (499)
110 TIGR02015 BchY chlorophyllide 76.9 14 0.0003 34.4 8.3 76 2-93 287-362 (422)
111 PRK06395 phosphoribosylamine-- 76.9 9.1 0.0002 35.8 7.1 31 1-31 3-33 (435)
112 PRK11908 NAD-dependent epimera 76.9 11 0.00023 33.7 7.3 30 1-30 2-33 (347)
113 PRK10217 dTDP-glucose 4,6-dehy 76.6 30 0.00064 30.8 10.2 79 1-93 2-81 (355)
114 cd01979 Pchlide_reductase_N Pc 76.3 7.6 0.00017 35.7 6.4 75 1-93 277-352 (396)
115 TIGR01861 ANFD nitrogenase iro 76.1 16 0.00034 35.0 8.5 75 2-93 330-405 (513)
116 cd01980 Chlide_reductase_Y Chl 76.1 11 0.00025 34.9 7.5 76 2-93 282-357 (416)
117 TIGR03693 ocin_ThiF_like putat 75.7 14 0.00031 36.0 8.1 78 2-93 131-211 (637)
118 TIGR02622 CDP_4_6_dhtase CDP-g 75.5 55 0.0012 29.1 11.6 77 1-93 5-82 (349)
119 PLN02657 3,8-divinyl protochlo 75.3 16 0.00035 33.5 8.2 31 1-31 61-92 (390)
120 PRK02842 light-independent pro 75.2 6.4 0.00014 36.6 5.6 76 1-93 291-367 (427)
121 TIGR01921 DAP-DH diaminopimela 75.1 22 0.00048 31.9 8.7 34 1-34 4-38 (324)
122 PRK11880 pyrroline-5-carboxyla 75.0 11 0.00024 32.3 6.7 31 1-31 3-35 (267)
123 PRK05884 short chain dehydroge 74.9 13 0.00027 31.0 6.9 73 1-93 1-76 (223)
124 COG0027 PurT Formate-dependent 74.6 6.8 0.00015 35.0 5.2 36 2-37 14-49 (394)
125 PF13477 Glyco_trans_4_2: Glyc 74.5 21 0.00045 26.8 7.6 80 2-95 1-83 (139)
126 COG0493 GltD NADPH-dependent g 74.3 9.4 0.0002 36.0 6.4 61 1-62 124-193 (457)
127 PF13727 CoA_binding_3: CoA-bi 74.2 3.8 8.2E-05 32.3 3.4 32 4-35 81-115 (175)
128 KOG1502|consensus 74.2 67 0.0014 28.9 11.6 106 1-125 7-117 (327)
129 PRK15204 undecaprenyl-phosphat 73.9 13 0.00029 35.1 7.4 31 2-32 148-181 (476)
130 TIGR01470 cysG_Nterm siroheme 73.8 43 0.00094 27.8 9.7 29 2-31 11-39 (205)
131 PRK05479 ketol-acid reductoiso 73.5 8.5 0.00019 34.6 5.7 28 1-28 18-45 (330)
132 cd00115 LMWPc Substituted upda 73.4 15 0.00032 28.4 6.4 75 1-93 1-83 (141)
133 TIGR00514 accC acetyl-CoA carb 73.2 11 0.00024 35.1 6.7 62 2-63 4-81 (449)
134 PRK00048 dihydrodipicolinate r 73.0 13 0.00028 32.1 6.6 33 1-33 2-36 (257)
135 cd01968 Nitrogenase_NifE_I Nit 72.8 18 0.00038 33.5 7.8 73 2-93 289-363 (410)
136 TIGR00877 purD phosphoribosyla 72.3 18 0.0004 33.3 7.9 60 1-61 1-69 (423)
137 PRK12833 acetyl-CoA carboxylas 72.2 11 0.00024 35.4 6.5 61 2-62 7-83 (467)
138 PRK06719 precorrin-2 dehydroge 72.1 47 0.001 26.3 10.0 30 1-31 14-43 (157)
139 PRK05784 phosphoribosylamine-- 72.0 11 0.00025 35.7 6.5 31 1-31 1-33 (486)
140 PRK05447 1-deoxy-D-xylulose 5- 71.9 17 0.00037 33.4 7.3 48 2-59 3-53 (385)
141 PLN00141 Tic62-NAD(P)-related 71.9 5.8 0.00013 33.6 4.2 31 1-31 18-49 (251)
142 TIGR03570 NeuD_NnaD sugar O-ac 71.6 9 0.0002 30.9 5.1 31 2-32 1-31 (201)
143 PF02571 CbiJ: Precorrin-6x re 71.5 19 0.00042 31.0 7.3 88 1-114 1-91 (249)
144 TIGR02689 ars_reduc_gluta arse 71.3 22 0.00048 26.9 6.9 74 1-93 1-78 (126)
145 PRK00045 hemA glutamyl-tRNA re 71.1 21 0.00045 33.2 8.0 32 1-32 183-214 (423)
146 TIGR01214 rmlD dTDP-4-dehydror 71.0 47 0.001 28.3 9.8 28 2-29 1-29 (287)
147 PF01370 Epimerase: NAD depend 70.8 17 0.00037 29.9 6.7 103 3-125 1-105 (236)
148 TIGR03026 NDP-sugDHase nucleot 69.9 6.5 0.00014 36.3 4.3 29 1-29 1-29 (411)
149 PRK10206 putative oxidoreducta 69.9 14 0.00031 33.2 6.5 66 1-93 2-71 (344)
150 TIGR01286 nifK nitrogenase mol 69.6 16 0.00034 35.1 6.8 76 2-93 365-444 (515)
151 PLN02712 arogenate dehydrogena 69.3 18 0.00039 35.9 7.4 27 1-27 370-396 (667)
152 PRK11579 putative oxidoreducta 68.9 28 0.0006 31.2 8.1 32 1-32 5-38 (346)
153 PRK06849 hypothetical protein; 68.9 7.3 0.00016 35.6 4.4 33 1-33 5-38 (389)
154 PRK15059 tartronate semialdehy 68.2 8.5 0.00019 33.9 4.5 27 1-27 1-27 (292)
155 PRK12921 2-dehydropantoate 2-r 68.1 9.1 0.0002 33.4 4.7 29 1-29 1-29 (305)
156 cd01065 NAD_bind_Shikimate_DH 68.0 25 0.00054 27.1 6.8 31 1-31 20-50 (155)
157 PF01176 eIF-1a: Translation i 67.8 15 0.00032 24.6 4.6 45 205-258 6-50 (65)
158 PF00448 SRP54: SRP54-type pro 67.7 53 0.0012 27.0 8.9 99 3-110 4-107 (196)
159 TIGR03466 HpnA hopanoid-associ 67.5 73 0.0016 27.6 10.4 32 1-32 1-33 (328)
160 cd03784 GT1_Gtf_like This fami 67.3 15 0.00032 33.3 6.1 31 1-32 1-36 (401)
161 PLN02896 cinnamyl-alcohol dehy 67.2 14 0.00031 32.9 5.9 30 1-30 11-41 (353)
162 PRK14618 NAD(P)H-dependent gly 67.2 9.2 0.0002 34.1 4.6 29 1-29 5-33 (328)
163 PLN02712 arogenate dehydrogena 67.1 27 0.00058 34.7 8.1 28 1-28 53-80 (667)
164 PRK06522 2-dehydropantoate 2-r 66.9 9.4 0.0002 33.2 4.5 30 1-30 1-30 (304)
165 TIGR01181 dTDP_gluc_dehyt dTDP 66.9 55 0.0012 28.1 9.4 77 2-93 1-80 (317)
166 TIGR00465 ilvC ketol-acid redu 66.6 13 0.00029 33.2 5.4 26 1-26 4-29 (314)
167 TIGR02014 BchZ chlorophyllide 66.3 90 0.0019 29.6 11.1 31 2-32 282-313 (468)
168 PRK10124 putative UDP-glucose 66.2 1.1E+02 0.0023 28.9 11.6 86 2-93 145-237 (463)
169 PF00148 Oxidored_nitro: Nitro 65.5 9.9 0.00022 34.7 4.6 76 2-93 273-348 (398)
170 PRK03562 glutathione-regulated 65.3 23 0.00049 34.8 7.2 49 2-63 402-450 (621)
171 PF03033 Glyco_transf_28: Glyc 65.3 18 0.00039 27.2 5.4 38 11-62 14-51 (139)
172 COG1893 ApbA Ketopantoate redu 65.3 26 0.00056 31.2 7.0 31 1-32 1-31 (307)
173 PRK07417 arogenate dehydrogena 65.0 9.8 0.00021 33.1 4.2 29 1-29 1-29 (279)
174 CHL00076 chlB photochlorophyll 65.0 1.3E+02 0.0029 28.8 12.3 74 2-93 307-381 (513)
175 COG1778 Low specificity phosph 64.9 11 0.00025 30.1 4.1 35 17-62 45-80 (170)
176 KOG3023|consensus 64.7 13 0.00028 31.9 4.6 78 2-90 170-250 (285)
177 PRK00094 gpsA NAD(P)H-dependen 64.2 11 0.00025 33.1 4.6 30 1-31 2-31 (325)
178 PRK13789 phosphoribosylamine-- 64.1 30 0.00065 32.2 7.5 33 1-34 5-37 (426)
179 COG1648 CysG Siroheme synthase 63.9 56 0.0012 27.4 8.4 50 1-61 13-62 (210)
180 TIGR01284 alt_nitrog_alph nitr 63.9 36 0.00077 32.1 8.0 74 2-93 327-402 (457)
181 COG1004 Ugd Predicted UDP-gluc 63.9 10 0.00022 34.9 4.2 31 1-31 1-31 (414)
182 COG1810 Uncharacterized protei 63.9 13 0.00029 31.3 4.5 33 1-33 2-36 (224)
183 TIGR00872 gnd_rel 6-phosphoglu 63.8 11 0.00024 33.1 4.4 28 1-28 1-28 (298)
184 TIGR02931 anfK_nitrog Fe-only 63.6 43 0.00094 31.5 8.5 79 1-93 313-395 (461)
185 KOG0685|consensus 63.6 22 0.00048 33.6 6.3 59 2-60 23-99 (498)
186 PRK14478 nitrogenase molybdenu 62.5 35 0.00076 32.3 7.7 75 2-93 326-400 (475)
187 COG2102 Predicted ATPases of P 62.4 69 0.0015 27.1 8.5 82 13-97 14-97 (223)
188 PRK13530 arsenate reductase; P 62.4 37 0.0008 26.1 6.6 53 1-59 4-59 (133)
189 PF11823 DUF3343: Protein of u 62.3 35 0.00075 23.2 5.8 57 3-59 5-66 (73)
190 PF02677 DUF208: Uncharacteriz 62.3 13 0.00027 30.4 4.0 55 9-63 8-62 (176)
191 PF03853 YjeF_N: YjeF-related 62.2 29 0.00063 27.8 6.2 75 3-93 29-106 (169)
192 cd03802 GT1_AviGT4_like This f 62.1 15 0.00033 31.8 4.9 31 1-31 1-44 (335)
193 PRK07231 fabG 3-ketoacyl-(acyl 61.8 30 0.00066 28.7 6.6 30 2-31 7-37 (251)
194 PRK12825 fabG 3-ketoacyl-(acyl 61.7 32 0.0007 28.3 6.7 30 1-30 7-37 (249)
195 PLN02427 UDP-apiose/xylose syn 61.5 36 0.00077 30.8 7.4 30 1-30 15-46 (386)
196 PRK00073 pgk phosphoglycerate 61.4 89 0.0019 28.9 9.8 74 11-93 37-111 (389)
197 PRK08229 2-dehydropantoate 2-r 61.3 14 0.0003 32.9 4.6 29 1-29 3-31 (341)
198 COG1064 AdhP Zn-dependent alco 61.2 44 0.00096 30.2 7.7 68 2-93 169-236 (339)
199 PRK10084 dTDP-glucose 4,6 dehy 61.1 34 0.00074 30.3 7.1 27 1-27 1-28 (352)
200 PRK12826 3-ketoacyl-(acyl-carr 61.0 26 0.00056 29.0 6.0 31 1-31 7-38 (251)
201 TIGR02712 urea_carbox urea car 60.9 27 0.00058 37.1 7.1 36 1-36 2-37 (1201)
202 PRK10538 malonic semialdehyde 60.8 97 0.0021 25.8 10.6 30 1-30 1-31 (248)
203 PRK05234 mgsA methylglyoxal sy 60.7 16 0.00034 28.7 4.2 45 16-62 67-112 (142)
204 TIGR01283 nifE nitrogenase mol 60.5 42 0.0009 31.5 7.8 72 2-92 328-401 (456)
205 TIGR01035 hemA glutamyl-tRNA r 60.4 29 0.00063 32.2 6.7 31 2-32 182-212 (417)
206 COG2099 CobK Precorrin-6x redu 60.3 45 0.00097 28.9 7.2 70 1-92 3-72 (257)
207 PRK12490 6-phosphogluconate de 60.3 14 0.00031 32.4 4.5 29 1-30 1-29 (299)
208 PRK05586 biotin carboxylase; V 60.3 13 0.00028 34.8 4.3 34 2-35 4-37 (447)
209 PRK07326 short chain dehydroge 60.2 20 0.00044 29.5 5.2 29 2-30 8-37 (237)
210 TIGR00036 dapB dihydrodipicoli 59.9 20 0.00042 31.2 5.1 34 1-34 2-37 (266)
211 PRK09922 UDP-D-galactose:(gluc 59.7 46 0.00099 29.7 7.7 17 77-93 75-91 (359)
212 COG1091 RfbD dTDP-4-dehydrorha 59.7 77 0.0017 27.9 8.7 85 1-122 1-90 (281)
213 cd01973 Nitrogenase_VFe_beta_l 59.6 53 0.0011 30.9 8.3 79 1-93 306-388 (454)
214 cd01078 NAD_bind_H4MPT_DH NADP 59.6 42 0.00091 27.2 6.9 27 1-27 29-56 (194)
215 COG0451 WcaG Nucleoside-diphos 59.5 18 0.0004 31.1 5.0 33 1-33 1-34 (314)
216 cd03808 GT1_cap1E_like This fa 59.4 36 0.00079 29.0 6.9 79 2-93 1-87 (359)
217 PRK08177 short chain dehydroge 59.1 65 0.0014 26.4 8.1 75 2-93 3-78 (225)
218 PRK01438 murD UDP-N-acetylmura 59.0 46 0.001 31.2 7.9 52 2-61 18-69 (480)
219 PRK07060 short chain dehydroge 58.9 49 0.0011 27.3 7.3 72 2-93 11-84 (245)
220 COG0541 Ffh Signal recognition 58.5 73 0.0016 29.9 8.7 74 11-93 116-189 (451)
221 PLN02948 phosphoribosylaminoim 58.4 55 0.0012 31.9 8.4 57 1-57 23-86 (577)
222 PRK09987 dTDP-4-dehydrorhamnos 58.3 1.2E+02 0.0025 26.4 9.9 27 1-28 1-28 (299)
223 TIGR03590 PseG pseudaminic aci 58.2 49 0.0011 28.7 7.4 73 6-92 12-86 (279)
224 cd05294 LDH-like_MDH_nadp A la 58.1 1.3E+02 0.0029 26.6 10.3 31 1-31 1-34 (309)
225 cd03785 GT1_MurG MurG is an N- 58.1 46 0.00099 29.2 7.4 80 2-93 1-96 (350)
226 PRK10867 signal recognition pa 57.7 57 0.0012 30.6 8.1 82 3-93 103-190 (433)
227 PTZ00431 pyrroline carboxylate 57.6 53 0.0011 28.2 7.4 23 1-23 4-26 (260)
228 PF02142 MGS: MGS-like domain 57.6 32 0.00068 24.6 5.2 66 13-94 3-68 (95)
229 COG4378 Uncharacterized protei 57.5 34 0.00074 24.7 5.0 59 1-62 1-77 (103)
230 cd01972 Nitrogenase_VnfE_like 57.4 47 0.001 30.9 7.5 78 2-93 295-380 (426)
231 TIGR00236 wecB UDP-N-acetylglu 57.0 53 0.0012 29.3 7.7 83 1-93 1-93 (365)
232 PRK08374 homoserine dehydrogen 56.9 1E+02 0.0022 27.8 9.3 31 1-31 3-43 (336)
233 PF00455 DeoRC: DeoR C termina 56.4 51 0.0011 26.2 6.7 80 3-97 22-105 (161)
234 PF00056 Ldh_1_N: lactate/mala 56.3 56 0.0012 25.3 6.7 101 1-125 1-107 (141)
235 TIGR01472 gmd GDP-mannose 4,6- 56.2 63 0.0014 28.6 7.9 31 1-31 1-32 (343)
236 PRK00885 phosphoribosylamine-- 56.0 40 0.00087 31.1 6.8 23 1-23 1-23 (420)
237 PRK02318 mannitol-1-phosphate 56.0 14 0.00031 33.7 3.8 30 1-30 1-31 (381)
238 PRK12742 oxidoreductase; Provi 56.0 1.1E+02 0.0024 25.0 11.7 73 2-93 8-82 (237)
239 PRK09291 short chain dehydroge 55.8 43 0.00094 27.9 6.6 74 2-93 4-80 (257)
240 cd01977 Nitrogenase_VFe_alpha 55.7 52 0.0011 30.5 7.5 74 2-93 290-365 (415)
241 PRK07206 hypothetical protein; 55.4 28 0.00061 31.9 5.7 34 2-35 4-37 (416)
242 PRK08057 cobalt-precorrin-6x r 55.4 85 0.0018 27.0 8.2 87 1-115 3-91 (248)
243 PRK11064 wecC UDP-N-acetyl-D-m 55.3 18 0.00038 33.6 4.3 32 1-32 4-35 (415)
244 cd05293 LDH_1 A subgroup of L- 55.2 1.1E+02 0.0024 27.2 9.2 23 1-23 4-26 (312)
245 TIGR01235 pyruv_carbox pyruvat 55.0 35 0.00076 36.1 6.8 62 2-63 1-81 (1143)
246 PLN02653 GDP-mannose 4,6-dehyd 54.8 1.4E+02 0.003 26.3 9.9 31 1-31 7-38 (340)
247 PRK14620 NAD(P)H-dependent gly 54.7 21 0.00046 31.7 4.6 31 1-32 1-31 (326)
248 TIGR01425 SRP54_euk signal rec 54.6 47 0.001 31.1 6.9 82 3-93 103-189 (429)
249 PLN02871 UDP-sulfoquinovose:DA 54.5 53 0.0012 30.6 7.5 32 1-32 59-100 (465)
250 TIGR03013 EpsB_2 sugar transfe 54.4 38 0.00082 31.6 6.4 30 2-32 126-159 (442)
251 cd00316 Oxidoreductase_nitroge 54.4 66 0.0014 29.2 7.9 73 2-93 281-355 (399)
252 PRK12767 carbamoyl phosphate s 54.2 21 0.00046 31.4 4.5 31 1-32 2-34 (326)
253 PF01118 Semialdhyde_dh: Semia 54.1 30 0.00064 25.9 4.7 33 2-34 1-35 (121)
254 PRK11559 garR tartronate semia 54.0 21 0.00046 31.1 4.4 27 1-27 3-29 (296)
255 PLN02166 dTDP-glucose 4,6-dehy 52.5 22 0.00048 33.2 4.5 30 1-30 121-151 (436)
256 PLN00203 glutamyl-tRNA reducta 52.4 66 0.0014 30.9 7.7 31 2-32 268-298 (519)
257 PLN02662 cinnamyl-alcohol dehy 52.2 1.6E+02 0.0034 25.5 12.2 32 1-32 5-37 (322)
258 cd05291 HicDH_like L-2-hydroxy 52.1 1.4E+02 0.003 26.3 9.3 29 1-29 1-31 (306)
259 PRK08291 ectoine utilization p 52.0 75 0.0016 28.4 7.7 32 1-32 133-165 (330)
260 PLN02282 phosphoglycerate kina 52.0 1.5E+02 0.0032 27.5 9.6 69 11-88 44-113 (401)
261 PRK15057 UDP-glucose 6-dehydro 51.9 22 0.00049 32.7 4.4 31 1-32 1-31 (388)
262 PLN02240 UDP-glucose 4-epimera 51.6 1.7E+02 0.0037 25.7 11.8 30 1-30 6-36 (352)
263 TIGR01860 VNFD nitrogenase van 51.5 78 0.0017 29.9 8.0 74 2-93 329-404 (461)
264 COG0796 MurI Glutamate racemas 51.3 41 0.00088 29.4 5.6 72 2-93 69-142 (269)
265 cd05312 NAD_bind_1_malic_enz N 51.3 87 0.0019 27.5 7.7 70 2-93 27-112 (279)
266 PRK08340 glucose-1-dehydrogena 51.1 40 0.00086 28.4 5.6 29 1-29 1-30 (259)
267 TIGR01179 galE UDP-glucose-4-e 51.0 80 0.0017 27.2 7.7 28 2-29 1-29 (328)
268 PRK06182 short chain dehydroge 50.2 63 0.0014 27.4 6.8 29 2-30 5-34 (273)
269 TIGR01316 gltA glutamate synth 50.2 61 0.0013 30.3 7.1 55 2-61 274-328 (449)
270 PRK00436 argC N-acetyl-gamma-g 50.0 52 0.0011 29.6 6.4 31 1-31 3-35 (343)
271 COG1636 Uncharacterized protei 49.9 25 0.00054 29.0 3.8 54 10-63 14-67 (204)
272 PLN02695 GDP-D-mannose-3',5'-e 49.9 26 0.00057 31.7 4.5 31 1-31 22-53 (370)
273 PRK10886 DnaA initiator-associ 49.4 1E+02 0.0022 25.4 7.6 69 24-110 110-180 (196)
274 COG1086 Predicted nucleoside-d 49.2 52 0.0011 31.9 6.4 38 2-39 118-156 (588)
275 cd05211 NAD_bind_Glu_Leu_Phe_V 49.2 1.6E+02 0.0034 24.7 11.8 31 1-31 24-54 (217)
276 PRK10537 voltage-gated potassi 49.2 91 0.002 28.8 7.9 68 2-93 242-309 (393)
277 PRK06019 phosphoribosylaminoim 49.2 81 0.0018 28.6 7.6 37 1-37 3-39 (372)
278 COG2085 Predicted dinucleotide 49.0 25 0.00055 29.5 3.8 47 1-58 2-48 (211)
279 PRK08507 prephenate dehydrogen 48.9 30 0.00064 29.9 4.5 25 1-25 1-25 (275)
280 KOG0029|consensus 48.9 61 0.0013 31.0 6.9 60 2-62 17-94 (501)
281 PRK06928 pyrroline-5-carboxyla 48.8 30 0.00065 30.0 4.5 23 1-23 2-24 (277)
282 PRK07502 cyclohexadienyl dehyd 48.7 50 0.0011 29.0 6.0 24 1-24 7-30 (307)
283 PF10087 DUF2325: Uncharacteri 48.6 57 0.0012 23.3 5.3 18 47-64 66-83 (97)
284 COG0361 InfA Translation initi 48.6 35 0.00075 23.7 3.8 28 205-232 10-37 (75)
285 TIGR00959 ffh signal recogniti 48.4 73 0.0016 29.8 7.2 81 3-93 102-189 (428)
286 PRK13957 indole-3-glycerol-pho 48.3 33 0.00072 29.5 4.6 88 19-119 70-158 (247)
287 PF01451 LMWPc: Low molecular 48.1 1E+02 0.0022 23.4 7.0 50 3-59 1-61 (138)
288 PRK12827 short chain dehydroge 48.0 1.2E+02 0.0025 25.0 8.0 30 1-30 7-37 (249)
289 cd01971 Nitrogenase_VnfN_like 47.9 1.1E+02 0.0024 28.3 8.5 32 2-33 295-327 (427)
290 PRK05693 short chain dehydroge 47.9 68 0.0015 27.2 6.6 29 1-29 1-31 (274)
291 PLN02696 1-deoxy-D-xylulose-5- 47.9 97 0.0021 29.2 7.8 31 2-32 59-92 (454)
292 PRK12769 putative oxidoreducta 47.8 1.2E+02 0.0026 29.9 9.0 83 1-93 328-419 (654)
293 PRK09860 putative alcohol dehy 47.7 1.3E+02 0.0028 27.5 8.7 84 4-93 12-95 (383)
294 PRK06129 3-hydroxyacyl-CoA deh 47.5 31 0.00067 30.4 4.5 29 1-29 3-31 (308)
295 PRK12831 putative oxidoreducta 47.5 64 0.0014 30.3 6.8 54 2-61 283-337 (464)
296 PRK07251 pyridine nucleotide-d 47.4 56 0.0012 30.2 6.3 59 2-61 159-217 (438)
297 PF00162 PGK: Phosphoglycerate 47.3 1.2E+02 0.0026 28.0 8.2 75 10-93 34-111 (384)
298 PRK07102 short chain dehydroge 47.3 1.6E+02 0.0035 24.2 10.3 30 1-30 2-32 (243)
299 PF07905 PucR: Purine cataboli 47.2 65 0.0014 24.2 5.6 46 12-63 61-106 (123)
300 COG1087 GalE UDP-glucose 4-epi 47.1 79 0.0017 28.3 6.7 73 1-93 1-74 (329)
301 PRK12429 3-hydroxybutyrate deh 47.0 78 0.0017 26.3 6.8 30 2-31 6-36 (258)
302 PF08484 Methyltransf_14: C-me 46.8 33 0.00071 27.4 4.1 64 2-93 70-133 (160)
303 PRK05476 S-adenosyl-L-homocyst 46.8 86 0.0019 29.3 7.4 64 15-91 64-128 (425)
304 PRK08125 bifunctional UDP-gluc 46.7 76 0.0016 31.3 7.4 31 1-31 316-348 (660)
305 PRK08309 short chain dehydroge 46.7 38 0.00083 27.4 4.5 29 1-29 1-29 (177)
306 cd08551 Fe-ADH iron-containing 46.6 1.3E+02 0.0029 27.1 8.6 84 4-93 4-87 (370)
307 TIGR01862 N2-ase-Ialpha nitrog 46.5 1E+02 0.0022 28.8 8.0 74 2-93 319-394 (443)
308 PLN02986 cinnamyl-alcohol dehy 46.3 1.5E+02 0.0033 25.7 8.8 31 1-31 6-37 (322)
309 PRK06141 ornithine cyclodeamin 46.3 1.1E+02 0.0024 27.1 7.8 31 2-32 127-158 (314)
310 PF02603 Hpr_kinase_N: HPr Ser 46.2 22 0.00048 27.1 2.9 54 2-64 50-113 (127)
311 PRK06953 short chain dehydroge 46.2 1.1E+02 0.0024 25.0 7.4 28 2-29 3-31 (222)
312 PTZ00142 6-phosphogluconate de 46.1 39 0.00085 32.0 5.1 30 1-31 2-31 (470)
313 PRK15461 NADH-dependent gamma- 45.9 33 0.00072 30.1 4.4 27 1-27 2-28 (296)
314 TIGR02638 lactal_redase lactal 45.9 1.6E+02 0.0035 26.8 9.0 84 4-93 10-93 (379)
315 PRK07845 flavoprotein disulfid 45.8 59 0.0013 30.5 6.3 60 2-62 179-238 (466)
316 COG0482 TrmU Predicted tRNA(5- 45.6 68 0.0015 29.2 6.3 61 1-62 4-69 (356)
317 PF13380 CoA_binding_2: CoA bi 45.5 38 0.00083 25.3 4.1 28 2-29 2-33 (116)
318 cd01967 Nitrogenase_MoFe_alpha 45.4 82 0.0018 28.8 7.1 31 2-32 288-318 (406)
319 PLN02602 lactate dehydrogenase 45.3 2E+02 0.0043 26.2 9.3 23 1-23 38-60 (350)
320 PRK15454 ethanol dehydrogenase 45.3 1.4E+02 0.003 27.5 8.5 84 4-93 30-113 (395)
321 cd08176 LPO Lactadehyde:propan 45.3 1.2E+02 0.0027 27.5 8.2 84 4-93 9-92 (377)
322 PRK10624 L-1,2-propanediol oxi 45.2 1.6E+02 0.0035 26.9 8.9 84 4-93 11-94 (382)
323 PLN02735 carbamoyl-phosphate s 45.1 44 0.00096 35.2 5.7 34 1-34 24-68 (1102)
324 PRK04207 glyceraldehyde-3-phos 45.1 62 0.0013 29.2 6.1 31 1-31 2-33 (341)
325 cd00532 MGS-like MGS-like doma 45.1 65 0.0014 23.8 5.3 47 16-62 59-105 (112)
326 PRK10423 transcriptional repre 45.0 1.5E+02 0.0034 25.5 8.6 47 11-59 161-207 (327)
327 TIGR01318 gltD_gamma_fam gluta 44.9 1.8E+02 0.0038 27.4 9.3 82 2-93 143-233 (467)
328 cd08189 Fe-ADH5 Iron-containin 44.8 1.5E+02 0.0031 27.0 8.5 84 4-93 7-90 (374)
329 PF04309 G3P_antiterm: Glycero 44.8 26 0.00056 28.6 3.2 68 6-93 57-124 (175)
330 TIGR01689 EcbF-BcbF capsule bi 44.5 47 0.001 25.4 4.5 47 12-59 29-80 (126)
331 PF03808 Glyco_tran_WecB: Glyc 44.4 64 0.0014 25.9 5.5 17 77-93 92-108 (172)
332 PRK00278 trpC indole-3-glycero 44.4 39 0.00084 29.2 4.5 89 17-118 77-166 (260)
333 smart00846 Gp_dh_N Glyceraldeh 44.3 47 0.001 26.1 4.6 31 1-31 1-32 (149)
334 PRK08306 dipicolinate synthase 44.3 1E+02 0.0022 27.1 7.2 65 1-93 153-217 (296)
335 PRK12770 putative glutamate sy 44.2 92 0.002 27.8 7.1 57 2-62 174-230 (352)
336 PRK05562 precorrin-2 dehydroge 44.2 2E+02 0.0043 24.4 10.6 31 1-32 26-56 (223)
337 TIGR01282 nifD nitrogenase mol 44.2 1.1E+02 0.0024 28.9 7.8 30 2-31 337-366 (466)
338 PRK08010 pyridine nucleotide-d 44.1 66 0.0014 29.8 6.3 59 2-61 160-218 (441)
339 PRK12809 putative oxidoreducta 44.1 1.7E+02 0.0038 28.7 9.5 83 1-93 311-402 (639)
340 TIGR01369 CPSaseII_lrg carbamo 44.1 57 0.0012 34.2 6.4 34 2-35 556-600 (1050)
341 COG0702 Predicted nucleoside-d 44.0 85 0.0018 26.3 6.6 34 1-34 1-35 (275)
342 PRK06249 2-dehydropantoate 2-r 44.0 40 0.00087 29.7 4.6 29 1-29 6-34 (313)
343 cd00532 MGS-like MGS-like doma 43.8 1E+02 0.0022 22.7 6.2 61 10-94 12-76 (112)
344 TIGR01285 nifN nitrogenase mol 43.7 1.1E+02 0.0024 28.5 7.7 68 2-93 313-380 (432)
345 PLN02206 UDP-glucuronate decar 43.6 36 0.00079 31.8 4.5 30 1-30 120-150 (442)
346 cd06341 PBP1_ABC_ligand_bindin 43.4 62 0.0013 28.4 5.8 77 10-93 118-195 (341)
347 TIGR02667 moaB_proteo molybden 43.4 85 0.0018 25.0 6.0 75 27-108 7-88 (163)
348 TIGR02130 dapB_plant dihydrodi 43.4 81 0.0017 27.7 6.2 73 1-93 1-76 (275)
349 PRK13403 ketol-acid reductoiso 43.1 62 0.0014 29.2 5.6 29 2-30 18-46 (335)
350 COG1103 Archaea-specific pyrid 42.9 75 0.0016 28.1 5.8 71 13-93 143-215 (382)
351 cd05191 NAD_bind_amino_acid_DH 42.9 73 0.0016 22.1 5.0 30 1-30 24-53 (86)
352 COG2120 Uncharacterized protei 42.8 1.8E+02 0.0039 24.7 8.3 81 12-93 27-116 (237)
353 PF13377 Peripla_BP_3: Peripla 42.8 22 0.00048 27.3 2.5 74 17-93 2-75 (160)
354 TIGR02992 ectoine_eutC ectoine 42.7 1.3E+02 0.0027 26.9 7.7 31 2-32 131-162 (326)
355 PLN03034 phosphoglycerate kina 42.6 2.2E+02 0.0048 27.1 9.3 74 11-93 119-193 (481)
356 PRK08264 short chain dehydroge 42.6 1.2E+02 0.0026 24.8 7.2 30 2-31 8-39 (238)
357 PRK06130 3-hydroxybutyryl-CoA 42.6 44 0.00094 29.4 4.7 30 1-30 5-34 (311)
358 TIGR02053 MerA mercuric reduct 42.5 68 0.0015 29.9 6.2 60 2-62 168-227 (463)
359 PRK12320 hypothetical protein; 42.3 39 0.00084 33.7 4.6 31 1-31 1-32 (699)
360 PRK07024 short chain dehydroge 42.2 98 0.0021 25.9 6.7 29 1-29 3-32 (257)
361 COG2266 GTP:adenosylcobinamide 42.2 1.3E+02 0.0028 24.6 6.8 62 13-92 31-92 (177)
362 PRK12810 gltD glutamate syntha 42.2 1.3E+02 0.0028 28.2 8.1 83 1-93 144-235 (471)
363 PF03054 tRNA_Me_trans: tRNA m 42.2 53 0.0012 29.9 5.1 61 1-62 1-68 (356)
364 TIGR03309 matur_yqeB selenium- 42.1 1.1E+02 0.0024 26.5 6.8 32 3-36 1-32 (256)
365 PRK05249 soluble pyridine nucl 42.0 73 0.0016 29.6 6.3 60 2-62 177-236 (461)
366 COG2403 Predicted GTPase [Gene 41.9 40 0.00087 31.0 4.2 79 1-93 7-89 (449)
367 PRK05653 fabG 3-ketoacyl-(acyl 41.7 44 0.00096 27.4 4.4 30 1-30 6-36 (246)
368 cd01422 MGS Methylglyoxal synt 41.6 70 0.0015 23.9 5.0 45 16-62 62-107 (115)
369 KOG2380|consensus 41.5 1E+02 0.0023 28.1 6.7 47 1-61 53-99 (480)
370 PRK00676 hemA glutamyl-tRNA re 41.5 51 0.0011 29.8 4.9 31 2-32 176-206 (338)
371 PRK09492 treR trehalose repres 41.3 2.3E+02 0.005 24.3 9.5 77 11-93 162-239 (315)
372 PRK12999 pyruvate carboxylase; 41.3 93 0.002 33.1 7.4 61 2-62 7-84 (1146)
373 PRK09754 phenylpropionate diox 41.3 66 0.0014 29.3 5.7 60 2-62 146-206 (396)
374 PRK06463 fabG 3-ketoacyl-(acyl 41.2 1.5E+02 0.0033 24.6 7.7 29 2-30 9-38 (255)
375 PRK01710 murD UDP-N-acetylmura 41.2 1.7E+02 0.0037 27.3 8.6 27 2-28 16-42 (458)
376 PRK08017 oxidoreductase; Provi 41.1 1.4E+02 0.003 24.7 7.4 28 2-29 4-32 (256)
377 PRK05976 dihydrolipoamide dehy 40.9 73 0.0016 29.8 6.1 59 2-61 182-240 (472)
378 PLN02350 phosphogluconate dehy 40.9 74 0.0016 30.4 6.1 30 1-31 7-36 (493)
379 cd03812 GT1_CapH_like This fam 40.8 1.4E+02 0.0031 25.8 7.7 80 2-93 1-87 (358)
380 cd03115 SRP The signal recogni 40.8 78 0.0017 24.9 5.5 80 3-91 3-87 (173)
381 PLN02740 Alcohol dehydrogenase 40.8 1.5E+02 0.0033 26.7 8.1 44 2-58 201-245 (381)
382 PRK05875 short chain dehydroge 40.7 1.2E+02 0.0026 25.6 7.0 29 1-29 8-37 (276)
383 smart00859 Semialdhyde_dh Semi 40.6 53 0.0011 24.3 4.3 32 2-33 1-34 (122)
384 PRK07538 hypothetical protein; 40.6 1.1E+02 0.0023 28.0 7.0 55 1-57 1-57 (413)
385 COG0289 DapB Dihydrodipicolina 40.5 1.1E+02 0.0023 26.8 6.4 37 1-37 3-41 (266)
386 PRK07531 bifunctional 3-hydrox 40.3 45 0.00097 31.7 4.6 27 1-27 5-31 (495)
387 PRK06370 mercuric reductase; V 40.3 77 0.0017 29.6 6.2 59 2-61 173-231 (463)
388 PRK12815 carB carbamoyl phosph 40.1 57 0.0012 34.3 5.7 88 1-112 556-654 (1068)
389 cd01076 NAD_bind_1_Glu_DH NAD( 40.1 53 0.0012 27.8 4.6 31 1-31 32-62 (227)
390 smart00652 eIF1a eukaryotic tr 39.9 50 0.0011 23.3 3.7 26 205-230 8-33 (83)
391 TIGR00661 MJ1255 conserved hyp 39.9 79 0.0017 27.8 5.9 29 2-31 1-35 (321)
392 KOG1495|consensus 39.9 2E+02 0.0044 25.4 8.0 100 2-125 22-126 (332)
393 cd00318 Phosphoglycerate_kinas 39.8 2.5E+02 0.0055 26.0 9.2 75 10-93 33-109 (397)
394 PRK08219 short chain dehydroge 39.8 1.4E+02 0.0031 24.0 7.2 28 2-30 5-33 (227)
395 COG1609 PurR Transcriptional r 39.6 1.9E+02 0.0041 25.8 8.3 52 5-59 154-208 (333)
396 PRK08618 ornithine cyclodeamin 39.4 1.5E+02 0.0033 26.3 7.7 31 2-32 129-160 (325)
397 PRK04965 NADH:flavorubredoxin 39.4 85 0.0018 28.3 6.1 60 2-62 143-203 (377)
398 PRK12829 short chain dehydroge 39.4 87 0.0019 26.1 5.9 30 1-30 12-42 (264)
399 PRK12311 rpsB 30S ribosomal pr 39.4 2.9E+02 0.0063 24.9 9.4 40 12-60 48-87 (326)
400 PF11116 DUF2624: Protein of u 39.3 34 0.00073 24.4 2.7 59 43-118 15-73 (85)
401 PRK06327 dihydrolipoamide dehy 39.2 84 0.0018 29.5 6.2 59 2-61 185-243 (475)
402 TIGR01118 lacA galactose-6-pho 39.1 1.9E+02 0.0041 22.7 7.1 28 1-29 1-32 (141)
403 PRK08622 galactose-6-phosphate 39.0 1.7E+02 0.0038 23.7 7.1 30 1-31 1-34 (171)
404 PLN02852 ferredoxin-NADP+ redu 39.0 2E+02 0.0043 27.5 8.6 83 1-93 27-121 (491)
405 TIGR01372 soxA sarcosine oxida 39.0 89 0.0019 32.5 6.8 53 2-62 319-371 (985)
406 PRK11303 DNA-binding transcrip 39.0 2.4E+02 0.0052 24.4 8.9 76 11-93 166-245 (328)
407 PRK06416 dihydrolipoamide dehy 38.9 88 0.0019 29.1 6.3 60 2-62 174-233 (462)
408 PRK10307 putative glycosyl tra 38.8 63 0.0014 29.3 5.2 33 1-33 1-42 (412)
409 cd06533 Glyco_transf_WecG_TagA 38.8 1.3E+02 0.0028 24.1 6.5 17 77-93 90-106 (171)
410 PRK06035 3-hydroxyacyl-CoA deh 38.8 54 0.0012 28.5 4.6 28 2-29 5-32 (291)
411 cd01976 Nitrogenase_MoFe_alpha 38.7 1.3E+02 0.0029 27.8 7.4 30 2-31 302-331 (421)
412 PF01210 NAD_Gly3P_dh_N: NAD-d 38.7 47 0.001 26.1 3.9 30 2-32 1-30 (157)
413 PF00899 ThiF: ThiF family; I 38.7 60 0.0013 24.6 4.4 30 1-30 3-32 (135)
414 PRK10906 DNA-binding transcrip 38.5 1.8E+02 0.0038 25.0 7.6 80 3-97 94-177 (252)
415 cd01424 MGS_CPS_II Methylglyox 38.4 1.5E+02 0.0033 21.5 6.4 61 10-94 13-75 (110)
416 PRK11199 tyrA bifunctional cho 38.0 1.1E+02 0.0025 27.8 6.7 29 1-29 99-128 (374)
417 COG1817 Uncharacterized protei 37.9 1.7E+02 0.0037 26.4 7.3 81 1-93 1-91 (346)
418 PF02629 CoA_binding: CoA bind 37.9 81 0.0018 22.5 4.7 37 2-38 5-42 (96)
419 PRK07818 dihydrolipoamide dehy 37.8 92 0.002 29.1 6.3 59 2-61 174-232 (466)
420 KOG3349|consensus 37.7 1.9E+02 0.0041 23.2 6.8 54 1-60 3-66 (170)
421 PRK07530 3-hydroxybutyryl-CoA 37.7 58 0.0013 28.3 4.6 29 1-29 5-33 (292)
422 PRK13978 ribose-5-phosphate is 37.7 54 0.0012 27.9 4.2 48 4-64 25-76 (228)
423 PLN00198 anthocyanidin reducta 37.6 65 0.0014 28.4 5.0 32 1-32 10-42 (338)
424 PRK05708 2-dehydropantoate 2-r 37.4 64 0.0014 28.4 4.9 30 1-30 3-32 (305)
425 PRK14974 cell division protein 37.4 88 0.0019 28.3 5.8 82 2-92 142-228 (336)
426 PF00044 Gp_dh_N: Glyceraldehy 37.3 49 0.0011 26.2 3.7 31 1-31 1-32 (151)
427 PRK09802 DNA-binding transcrip 37.3 1.7E+02 0.0036 25.4 7.3 81 3-97 109-192 (269)
428 PRK07340 ornithine cyclodeamin 37.2 1.7E+02 0.0036 25.9 7.5 31 2-32 127-158 (304)
429 PRK13512 coenzyme A disulfide 37.1 82 0.0018 29.2 5.8 58 2-61 150-208 (438)
430 COG4607 CeuA ABC-type enteroch 37.1 1E+02 0.0022 27.5 5.8 66 2-93 60-125 (320)
431 TIGR00936 ahcY adenosylhomocys 37.1 1.2E+02 0.0025 28.3 6.6 64 15-91 48-111 (406)
432 cd08190 HOT Hydroxyacid-oxoaci 37.1 2.3E+02 0.0049 26.2 8.6 84 4-93 4-87 (414)
433 PRK09880 L-idonate 5-dehydroge 37.1 1.7E+02 0.0037 25.8 7.7 45 2-59 172-217 (343)
434 PRK15182 Vi polysaccharide bio 36.9 44 0.00095 31.2 3.9 30 1-31 7-36 (425)
435 TIGR01292 TRX_reduct thioredox 36.9 1.2E+02 0.0025 25.9 6.4 53 2-61 143-196 (300)
436 PLN02260 probable rhamnose bio 36.8 1.7E+02 0.0037 28.8 8.2 29 1-29 7-38 (668)
437 cd01981 Pchlide_reductase_B Pc 36.5 1.3E+02 0.0028 27.9 7.0 31 2-32 303-334 (430)
438 TIGR01505 tartro_sem_red 2-hyd 36.5 47 0.001 28.9 3.8 26 2-27 1-26 (291)
439 cd06287 PBP1_LacI_like_8 Ligan 36.4 2.2E+02 0.0047 24.1 8.0 47 11-59 105-151 (269)
440 cd08186 Fe-ADH8 Iron-containin 36.3 2E+02 0.0044 26.2 8.1 85 4-93 4-91 (383)
441 TIGR03649 ergot_EASG ergot alk 36.2 69 0.0015 27.4 4.8 33 2-34 1-34 (285)
442 COG0151 PurD Phosphoribosylami 36.2 1.5E+02 0.0032 27.7 7.0 32 1-33 1-32 (428)
443 PRK00141 murD UDP-N-acetylmura 36.1 1.3E+02 0.0029 28.2 7.1 49 1-61 16-64 (473)
444 PF13241 NAD_binding_7: Putati 36.0 38 0.00083 24.6 2.7 30 2-32 9-38 (103)
445 PRK10637 cysG siroheme synthas 35.8 3.4E+02 0.0073 25.5 9.7 29 2-31 14-42 (457)
446 PRK11749 dihydropyrimidine deh 35.8 1.5E+02 0.0033 27.6 7.4 56 2-61 275-330 (457)
447 cd08193 HVD 5-hydroxyvalerate 35.8 2.5E+02 0.0054 25.5 8.6 84 4-93 7-90 (376)
448 PF00318 Ribosomal_S2: Ribosom 35.7 1.6E+02 0.0036 24.4 6.8 41 12-61 45-85 (211)
449 PLN02819 lysine-ketoglutarate 35.7 1.5E+02 0.0032 31.2 7.7 21 2-22 571-591 (1042)
450 PRK06057 short chain dehydroge 35.6 1.8E+02 0.0039 24.2 7.2 28 2-29 9-37 (255)
451 COG1553 DsrE Uncharacterized c 35.6 2E+02 0.0044 22.0 7.2 25 11-35 19-43 (126)
452 PRK09536 btuD corrinoid ABC tr 35.6 1.2E+02 0.0025 28.2 6.4 78 2-99 269-353 (402)
453 KOG3075|consensus 35.6 79 0.0017 27.4 4.8 49 2-63 44-97 (261)
454 COG4569 MhpF Acetaldehyde dehy 35.5 1.4E+02 0.0029 25.3 6.0 49 1-59 5-55 (310)
455 PRK12778 putative bifunctional 35.4 2.8E+02 0.0061 27.8 9.6 84 1-93 432-524 (752)
456 PRK07027 cobalamin biosynthesi 35.4 81 0.0018 24.0 4.5 55 1-62 1-66 (126)
457 PRK14477 bifunctional nitrogen 35.3 1.5E+02 0.0033 30.6 7.8 75 2-93 322-396 (917)
458 PRK12939 short chain dehydroge 35.3 1.5E+02 0.0033 24.3 6.8 29 1-29 8-37 (250)
459 COG0108 RibB 3,4-dihydroxy-2-b 35.3 66 0.0014 26.8 4.2 40 22-63 153-192 (203)
460 COG0499 SAM1 S-adenosylhomocys 35.3 97 0.0021 28.5 5.5 63 17-91 63-125 (420)
461 cd05298 GH4_GlvA_pagL_like Gly 35.3 2E+02 0.0044 26.9 8.0 75 1-93 1-81 (437)
462 PRK08621 galactose-6-phosphate 35.3 2.2E+02 0.0048 22.3 7.1 28 1-29 1-32 (142)
463 TIGR01481 ccpA catabolite cont 35.2 2.1E+02 0.0046 24.7 7.9 48 11-59 163-210 (329)
464 smart00851 MGS MGS-like domain 35.2 1.6E+02 0.0034 20.6 6.1 60 13-94 3-63 (90)
465 cd08192 Fe-ADH7 Iron-containin 35.1 2.7E+02 0.0059 25.1 8.8 84 4-93 5-88 (370)
466 PRK13301 putative L-aspartate 35.1 91 0.002 27.2 5.2 30 1-30 3-35 (267)
467 PRK10411 DNA-binding transcrip 35.0 1.8E+02 0.0039 24.7 7.1 80 3-97 96-178 (240)
468 PRK08293 3-hydroxybutyryl-CoA 35.0 67 0.0015 27.9 4.6 29 1-29 4-32 (287)
469 COG1454 EutG Alcohol dehydroge 34.9 3.2E+02 0.0069 25.2 9.0 86 2-93 8-93 (377)
470 PRK11391 etp phosphotyrosine-p 34.9 2.1E+02 0.0046 22.1 10.5 52 1-59 3-60 (144)
471 cd08239 THR_DH_like L-threonin 34.7 1.4E+02 0.0031 26.1 6.8 27 2-28 166-193 (339)
472 PF02606 LpxK: Tetraacyldisacc 34.7 2.2E+02 0.0048 25.5 7.9 70 10-93 52-135 (326)
473 PRK15181 Vi polysaccharide bio 34.6 64 0.0014 28.8 4.5 31 1-31 16-47 (348)
474 PRK02705 murD UDP-N-acetylmura 34.5 2.5E+02 0.0054 26.0 8.6 27 2-28 2-28 (459)
475 KOG0238|consensus 34.5 77 0.0017 30.4 4.9 34 3-36 1-34 (670)
476 cd01492 Aos1_SUMO Ubiquitin ac 34.5 80 0.0017 26.0 4.7 30 1-30 22-51 (197)
477 PLN02846 digalactosyldiacylgly 34.5 96 0.0021 29.3 5.7 31 1-31 5-45 (462)
478 cd01483 E1_enzyme_family Super 34.3 83 0.0018 24.0 4.6 29 2-30 1-29 (143)
479 TIGR02932 vnfK_nitrog V-contai 34.2 2.2E+02 0.0049 26.8 8.2 32 1-32 310-341 (457)
480 PF00218 IGPS: Indole-3-glycer 34.1 15 0.00032 31.9 0.2 92 14-118 72-164 (254)
481 PRK05234 mgsA methylglyoxal sy 34.1 2.3E+02 0.0049 22.1 7.8 70 1-94 5-83 (142)
482 PRK11889 flhF flagellar biosyn 34.1 1.1E+02 0.0024 28.6 5.9 75 2-92 243-326 (436)
483 PRK05565 fabG 3-ketoacyl-(acyl 34.1 2.2E+02 0.0048 23.2 7.5 30 2-31 7-37 (247)
484 COG0240 GpsA Glycerol-3-phosph 33.9 56 0.0012 29.4 3.9 30 1-30 2-31 (329)
485 TIGR01850 argC N-acetyl-gamma- 33.6 1.4E+02 0.003 26.9 6.5 31 1-31 1-33 (346)
486 TIGR01317 GOGAT_sm_gam glutama 33.6 1.9E+02 0.004 27.4 7.6 83 1-93 144-235 (485)
487 PRK12779 putative bifunctional 33.5 1.3E+02 0.0027 31.4 6.8 83 2-93 308-399 (944)
488 PRK11749 dihydropyrimidine deh 33.4 1.9E+02 0.0042 26.9 7.6 83 1-93 141-232 (457)
489 PRK10528 multifunctional acyl- 33.4 43 0.00092 27.1 2.9 15 47-61 133-147 (191)
490 PRK12769 putative oxidoreducta 33.4 1.7E+02 0.0036 28.9 7.5 56 2-61 470-525 (654)
491 cd06346 PBP1_ABC_ligand_bindin 33.4 2.2E+02 0.0048 24.6 7.7 90 13-112 126-216 (312)
492 PRK13802 bifunctional indole-3 33.4 44 0.00094 33.4 3.4 87 19-118 79-166 (695)
493 TIGR01318 gltD_gamma_fam gluta 33.4 1.7E+02 0.0037 27.5 7.3 57 2-62 284-340 (467)
494 COG0300 DltE Short-chain dehyd 33.2 2E+02 0.0043 25.1 7.0 80 2-93 8-91 (265)
495 PRK15116 sulfur acceptor prote 33.1 3.3E+02 0.0072 23.7 9.3 29 2-30 32-60 (268)
496 TIGR01316 gltA glutamate synth 33.0 2.6E+02 0.0057 26.0 8.5 83 1-93 134-225 (449)
497 TIGR02371 ala_DH_arch alanine 33.0 2.4E+02 0.0051 25.2 7.8 31 2-32 130-161 (325)
498 COG0461 PyrE Orotate phosphori 32.8 91 0.002 26.0 4.7 51 6-65 122-172 (201)
499 PRK06116 glutathione reductase 32.7 1.2E+02 0.0026 28.1 6.2 60 2-62 169-228 (450)
500 cd08281 liver_ADH_like1 Zinc-d 32.7 1.9E+02 0.004 25.9 7.2 28 2-29 194-222 (371)
No 1
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-64 Score=440.12 Aligned_cols=238 Identities=40% Similarity=0.621 Sum_probs=230.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHH
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHK 80 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~ 80 (258)
|||+||||++||+++|++|++++|+|++|+|+||++.|||+++.+|||+++|.++|||+|+|++++++ ++++
T Consensus 2 mkivF~GTp~fa~~~L~~L~~~~~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ipv~qP~~l~~~--------e~~~ 73 (307)
T COG0223 2 MRIVFFGTPEFAVPSLEALIEAGHEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIPVFQPEKLNDP--------EFLE 73 (307)
T ss_pred cEEEEEcCchhhHHHHHHHHhCCCceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCceeccccCCcH--------HHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999987 9999
Q ss_pred HHhcCCCcEEEEE-------------------------------------------------------------------
Q psy5230 81 LLNKIEFDIMIVM------------------------------------------------------------------- 93 (258)
Q Consensus 81 ~l~~~~~Dl~vv~------------------------------------------------------------------- 93 (258)
.+++++||++||+
T Consensus 74 ~l~~l~~D~ivvvayG~ilp~~iL~~~~~G~iNvH~SLLPr~RGaAPIq~aI~~Gd~~TGvTim~M~~~lDaG~Il~q~~ 153 (307)
T COG0223 74 ELAALDPDLIVVVAYGQILPKEILDLPPYGCINLHPSLLPRYRGAAPIQWAILNGDTETGVTIMQMDEGLDAGDILAQRE 153 (307)
T ss_pred HHhccCCCEEEEEehhhhCCHHHHhcCcCCeEEecCccCccccCccHHHHHHHcCCcccceEEEEccccCCCcceeeeEE
Confidence 9999999999999
Q ss_pred -eeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCcCCCCCcccccccccccHHHHHHHHhhcCCC
Q psy5230 94 -GILPEDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLIKKNEAVLDWSLSAKTIMRKINAFNPF 172 (258)
Q Consensus 94 -~I~~~dt~~~L~~kl~~~g~~ll~~~l~~l~~~~g~~~~~~Q~~~~atya~k~~~~d~~IdW~~~a~~I~~~iRA~~p~ 172 (258)
+|.++||+.+|++||+..|++||+++|..+.. |++.+.+|+++++|||+|++++|+.|||+++|.+|+|+|||++||
T Consensus 154 ~~I~~~dta~~L~~kLa~~ga~lL~~~L~~i~~--g~~~~~~Q~e~~~tya~ki~ked~~Idw~~~a~~i~n~IRa~~P~ 231 (307)
T COG0223 154 VPIEPDDTAGSLHDKLAELGAELLLETLPQLEA--GTLTPIPQDEEEATYAPKITKEDGRIDWSKPAAQILNKIRAFNPW 231 (307)
T ss_pred eccCCcccHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCCCCcccCccccCCCHHHcccCCccCHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEeccCCCceEEEEEEEEccCCCCCCCcEEEEEeeCCcEEEEecCcEEEEEEEecCCCCccCHHHHhccccCCC
Q psy5230 173 PGAKTYYISYQNKKKFLKIWKAHALSIESTKKPGTILNVNFHNGILVVCGKNVIKLLELQKNNKKKISATEFINGCIKNI 252 (258)
Q Consensus 173 pga~~~~~~~~~~g~~i~i~~a~~~~~~~~~~pG~i~~~~~~~~l~V~c~dg~l~i~~lq~~gkk~~~a~~f~~g~~~~~ 252 (258)
||||+.+ + ++++||+++++.+......||+|+..+ +++++|+|++|.|+|.++|++|||.|++.+|+||.++..
T Consensus 232 Pga~~~~---~--~~~iki~~a~~~~~~~~~~pG~i~~~~-~~~l~Va~~~g~l~l~~lQ~~gkk~~~~~~~l~g~~~~~ 305 (307)
T COG0223 232 PGAWTEL---G--GKRIKIWEARVLEGASNGKPGEILAAD-KKGLLVACGDGALRLTELQPAGKKAMSAADFLNGRRLVK 305 (307)
T ss_pred CceEEEE---C--CeEEEEEEEEEccccccCCCcceEEec-CCcEEEEeCCceEEEEeeccCCCCCCCHHHHhccccccc
Confidence 9999999 8 999999999998765457999999988 789999999999999999999999999999999999877
Q ss_pred cc
Q psy5230 253 KY 254 (258)
Q Consensus 253 g~ 254 (258)
|.
T Consensus 306 g~ 307 (307)
T COG0223 306 GA 307 (307)
T ss_pred CC
Confidence 63
No 2
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=100.00 E-value=1.2e-56 Score=397.79 Aligned_cols=241 Identities=35% Similarity=0.543 Sum_probs=227.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHH
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHK 80 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~ 80 (258)
|||+||||++||+++|++|++++|++++|||+||++.||+++..+++|+++|+++|||++++++.+.+ ++++
T Consensus 1 mkIvf~Gs~~~a~~~L~~L~~~~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~~~~~~~~--------~~~~ 72 (313)
T TIGR00460 1 LRIVFFGTPTFSLPVLEELREDNFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQPEKQRQL--------EELP 72 (313)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCCEEecCCCCcH--------HHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988766 7889
Q ss_pred HHhcCCCcEEEEE-------------------------------------------------------------------
Q psy5230 81 LLNKIEFDIMIVM------------------------------------------------------------------- 93 (258)
Q Consensus 81 ~l~~~~~Dl~vv~------------------------------------------------------------------- 93 (258)
.+++.+||++||+
T Consensus 73 ~l~~~~~Dliv~~~~~~iip~~il~~~~~g~iNiHpSlLP~yRG~~pi~wai~~G~~~tGvTih~~~~~~D~G~Ii~q~~ 152 (313)
T TIGR00460 73 LVRELKPDVIVVVSFGKILPKEFLDLFPYGCINVHPSLLPRWRGGAPIQRAILNGDKKTGVTIMQMVPKMDAGDILKQET 152 (313)
T ss_pred HHHhhCCCEEEEccchhhCCHHHHhhccCCEEEecCccccCCCCccHHHHHHHCCCCeEEEEEEEEccccCCCCeEEEEE
Confidence 9999999999998
Q ss_pred -eeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCcCCCCCcccccccccccHHHHHHHHhhcCCC
Q psy5230 94 -GILPEDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLIKKNEAVLDWSLSAKTIMRKINAFNPF 172 (258)
Q Consensus 94 -~I~~~dt~~~L~~kl~~~g~~ll~~~l~~l~~~~g~~~~~~Q~~~~atya~k~~~~d~~IdW~~~a~~I~~~iRA~~p~ 172 (258)
+|+++||+.+|++||+.++++++.++|.++.. ++..+++|++..+||++|++++|+.|||+++|++|+|+|||++||
T Consensus 153 ~~I~~~~t~~~l~~~l~~~~~~ll~~~l~~l~~--~~~~~~~Q~~~~~ty~~k~~~~d~~Idw~~~a~~I~~~iRA~~p~ 230 (313)
T TIGR00460 153 FPIEEEDNSGTLSDKLSELGAQLLIETLKELPE--GKNKPEPQDAEEATYAPKISKEQERIDWNQSAEELLNKIRALNPW 230 (313)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHc--CCCCcccCCCCCceECCCCCHHHeeECccCCHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999 888899999999999999999999999999999999999999999
Q ss_pred CceEEEEEeccCCCceEEEEEEEEccCCC-CCCCcEEEEEeeCCcEEEEec-CcEEEEEEEecCCCCccCHHHHhccccC
Q psy5230 173 PGAKTYYISYQNKKKFLKIWKAHALSIES-TKKPGTILNVNFHNGILVVCG-KNVIKLLELQKNNKKKISATEFINGCIK 250 (258)
Q Consensus 173 pga~~~~~~~~~~g~~i~i~~a~~~~~~~-~~~pG~i~~~~~~~~l~V~c~-dg~l~i~~lq~~gkk~~~a~~f~~g~~~ 250 (258)
||||+++ + |++++|++++..+... ...||+|+.++ +++++|+|+ ||+|+|.++|++|||.|++.+|+||+++
T Consensus 231 pga~~~~---~--g~~i~i~~a~~~~~~~~~~~pG~v~~~~-~~~~~V~~~~dg~l~i~~lq~~Gkk~~~a~~f~~g~~~ 304 (313)
T TIGR00460 231 PTAWLTF---E--GKNIKIHKAKVIDLSTYKAKPGEIVYHN-KKGILVACGKDGILLLLSLQPPGKKVMRAEDFYNGSRH 304 (313)
T ss_pred CceEEEE---C--CEEEEEEEEEEccCCCCCCCCCEEEEeC-CCeEEEEEcCCCEEEEEEEeCCCCCcCcHHHHHcCCCC
Confidence 9999999 8 9999999999765432 24799999887 679999999 8999999999999999999999999999
Q ss_pred CCccccc
Q psy5230 251 NIKYFIS 257 (258)
Q Consensus 251 ~~g~~~~ 257 (258)
+.|...+
T Consensus 305 ~~~~~~~ 311 (313)
T TIGR00460 305 PWYVPGS 311 (313)
T ss_pred ccccccc
Confidence 9887653
No 3
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=100.00 E-value=2.5e-56 Score=395.44 Aligned_cols=241 Identities=38% Similarity=0.593 Sum_probs=229.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHH
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHK 80 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~ 80 (258)
|||+||||++||+++|++|+++++++++|||+||++.||+++..+++|+++|+++|||++++.+++++ ++++
T Consensus 1 mkIvf~G~~~~a~~~L~~L~~~~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip~~~~~~~~~~--------~~~~ 72 (309)
T PRK00005 1 MRIVFMGTPEFAVPSLKALLESGHEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVLQPEKLRDP--------EFLA 72 (309)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCCEECcCCCCCH--------HHHH
Confidence 99999999999999999999989999999999999999998889999999999999999999988876 8899
Q ss_pred HHhcCCCcEEEEE-------------------------------------------------------------------
Q psy5230 81 LLNKIEFDIMIVM------------------------------------------------------------------- 93 (258)
Q Consensus 81 ~l~~~~~Dl~vv~------------------------------------------------------------------- 93 (258)
.+++++||++|++
T Consensus 73 ~l~~~~~Dliv~~~~~~iip~~il~~~~~g~iNiHpslLP~yRG~~pi~wai~~g~~~~GvTih~~~~~~D~G~Ii~q~~ 152 (309)
T PRK00005 73 ELAALNADVIVVVAYGQILPKAVLDIPRLGCINLHASLLPRWRGAAPIQRAIIAGDAETGVTIMQMDEGLDTGDMLLKAE 152 (309)
T ss_pred HHHhcCcCEEEEehhhcccCHHHHhcCCCCEEEEeCcccccCCCccHHHHHHHcCCCeEEEEEEEECCcccCCCEEEEEE
Confidence 9999999999998
Q ss_pred -eeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCcCCCCCcccccccccccHHHHHHHHhhcCCC
Q psy5230 94 -GILPEDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLIKKNEAVLDWSLSAKTIMRKINAFNPF 172 (258)
Q Consensus 94 -~I~~~dt~~~L~~kl~~~g~~ll~~~l~~l~~~~g~~~~~~Q~~~~atya~k~~~~d~~IdW~~~a~~I~~~iRA~~p~ 172 (258)
+|.++||+.+|++|+..++.+++.++|.++.. +.+++++|++..+||+||++++|+.|||+++|++|+|++||++||
T Consensus 153 ~~i~~~dt~~~L~~kl~~~~~~ll~~~i~~l~~--g~~~~~~Q~~~~~ty~~k~~~~d~~Idw~~~a~~I~~~iRA~~p~ 230 (309)
T PRK00005 153 VPITPTDTAGELHDKLAELGADLLVETLKGLED--GTLTPIPQDEEGVTYAPKISKEEARIDWSKPAAELENHIRGFNPW 230 (309)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh--CCCceecCCCCCceECCCCCHHHeeEcCCCCHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEeccCCCceEEEEEEEEccCCCCCCCcEEEEEeeCCcEEEEecCcEEEEEEEecCCCCccCHHHHhccccCCC
Q psy5230 173 PGAKTYYISYQNKKKFLKIWKAHALSIESTKKPGTILNVNFHNGILVVCGKNVIKLLELQKNNKKKISATEFINGCIKNI 252 (258)
Q Consensus 173 pga~~~~~~~~~~g~~i~i~~a~~~~~~~~~~pG~i~~~~~~~~l~V~c~dg~l~i~~lq~~gkk~~~a~~f~~g~~~~~ 252 (258)
||||+++ + |++++|++++..+......||+|+.++ +++++|+|+||.|+|.++|++||+.|++.+|+||+++++
T Consensus 231 pga~~~~---~--g~~v~i~~a~~~~~~~~~~pG~i~~~~-~~~~~V~~~dg~l~i~~l~~~g~k~~~~~~f~~g~~~~~ 304 (309)
T PRK00005 231 PGAWTEL---D--GQRLKILEAELVEASGSGAPGTILAID-KDGIVVATGEGALRLTQLQPPGKKPMSAADFLNGRRLEV 304 (309)
T ss_pred CceEEEE---C--CEEEEEEEEEEccCCCCCCCCEEEEec-CCeEEEEECCeeEEEEEEECCCCCcccHHHHhcCCCCCC
Confidence 9999999 8 999999999986644446899999887 779999999999999999999999999999999999999
Q ss_pred ccccc
Q psy5230 253 KYFIS 257 (258)
Q Consensus 253 g~~~~ 257 (258)
|+++.
T Consensus 305 g~~~~ 309 (309)
T PRK00005 305 GDRLG 309 (309)
T ss_pred CCCCC
Confidence 99863
No 4
>PLN02285 methionyl-tRNA formyltransferase
Probab=100.00 E-value=5.9e-53 Score=376.20 Aligned_cols=239 Identities=25% Similarity=0.369 Sum_probs=213.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHhC------CCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCc---EEccCCCCCCccc
Q psy5230 1 MKIIFAGTSISAAAILDTLYNS------EHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIK---IIQPISLKLNGKY 71 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~------~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIp---v~~~~~~~~~~~~ 71 (258)
|||+||||++||+++|++|+++ +++|++|||+||++.|||+++.++||+++|+++||| ++++.+.+++
T Consensus 7 ~kI~f~Gt~~fa~~~L~~L~~~~~~~~~~~~iv~Vvt~~~~~~gr~~~~~~~pv~~~A~~~gIp~~~v~~~~~~~~~--- 83 (334)
T PLN02285 7 KRLVFLGTPEVAATVLDALLDASQAPDSAFEVAAVVTQPPARRGRGRKLMPSPVAQLALDRGFPPDLIFTPEKAGEE--- 83 (334)
T ss_pred cEEEEEECCHHHHHHHHHHHhhhhccCCCCeEEEEEeCCCCcccCCcccCCCHHHHHHHHcCCCcceecCccccCCH---
Confidence 8999999999999999999984 589999999999999999999999999999999999 8888887766
Q ss_pred ccchHHHHHHHhcCCCcEEEEE----------------------------------------------------------
Q psy5230 72 HKIANETHKLLNKIEFDIMIVM---------------------------------------------------------- 93 (258)
Q Consensus 72 ~~~~~~~~~~l~~~~~Dl~vv~---------------------------------------------------------- 93 (258)
++++.+++.+||++|++
T Consensus 84 -----~~~~~l~~~~~Dliv~~~~~~ilp~~~l~~~~~g~iNiHpSLLP~yRG~~pi~~ai~~G~~~tGvTih~~~~~~D 158 (334)
T PLN02285 84 -----DFLSALRELQPDLCITAAYGNILPQKFLDIPKLGTVNIHPSLLPLYRGAAPVQRALQDGVNETGVSVAFTVRALD 158 (334)
T ss_pred -----HHHHHHHhhCCCEEEhhHhhhhcCHHHHhhccCCEEEEecccccCCCCcCHHHHHHHcCCCcEEEEEEEECCCcc
Confidence 88899999999999999
Q ss_pred ----------eeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--ccccCCCCCCCCcCCCCCcccccccccccHHH
Q psy5230 94 ----------GILPEDTSLTLQNKLEKLSKILIIDTIKKIEYDMTK--LFFKPQSNIGESYAPLIKKNEAVLDWSLSAKT 161 (258)
Q Consensus 94 ----------~I~~~dt~~~L~~kl~~~g~~ll~~~l~~l~~~~g~--~~~~~Q~~~~atya~k~~~~d~~IdW~~~a~~ 161 (258)
+|+++||+.+|++||+.++++++.++|..+.. ++ .++++|+++.+|||||++++|+.|||+++|++
T Consensus 159 ~G~Ii~q~~~~I~~~dt~~~L~~kl~~~~~~ll~~~l~~l~~--~~~~~~~~~Q~~~~atya~k~~~~d~~Idw~~~a~~ 236 (334)
T PLN02285 159 AGPVIAQERVEVDEDIKAPELLPLLFELGTKLLLRELPSVLD--GSAKDKATPQDDSKATHAPKISPEESWLSFDEEARV 236 (334)
T ss_pred CCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHc--CCCCCcccCCCCCCceECCCCCHHHeEEcCCCCHHH
Confidence 99999999999999999999999999999988 75 67899999999999999999999999999999
Q ss_pred HHHHHhhcCCCCceEEEEEec-cCCC----ceEEEEEEEEccCCC--CCCCcEEEEEeeCCcEEEEecCc-EEEEEEEec
Q psy5230 162 IMRKINAFNPFPGAKTYYISY-QNKK----KFLKIWKAHALSIES--TKKPGTILNVNFHNGILVVCGKN-VIKLLELQK 233 (258)
Q Consensus 162 I~~~iRA~~p~pga~~~~~~~-~~~g----~~i~i~~a~~~~~~~--~~~pG~i~~~~~~~~l~V~c~dg-~l~i~~lq~ 233 (258)
|+|+|||++||||||+++... +.++ .+++|++++..+... ..+||++. .+ +++++|+|+|| +|+|.++|+
T Consensus 237 I~~~iRa~~p~Pga~~~~~~~~~~~~~~~~~~iki~~~~~~~~~~~~~~~~g~~~-~~-~~~l~V~c~dg~~l~i~~lq~ 314 (334)
T PLN02285 237 LHNKVRAFAGWPGTRAKFQLVDDGDGEREVLELKIITTRVCEAGGEQTGSADAVT-FK-KDSLLVPCGGGTWLEVLEVQP 314 (334)
T ss_pred HHHHHhcCCCCCcEEEEEccccccCCcccceeEEEEEEEEeccccccCCCCcEEE-Ee-CCeEEEEeCCCCEEEEEEEEC
Confidence 999999999999999988211 0013 389999988754321 23677754 45 68999999999 599999999
Q ss_pred CCCCccCHHHHhccccCC
Q psy5230 234 NNKKKISATEFINGCIKN 251 (258)
Q Consensus 234 ~gkk~~~a~~f~~g~~~~ 251 (258)
+|||.|++.+|+||++++
T Consensus 315 ~Gkk~m~~~~f~~G~~~~ 332 (334)
T PLN02285 315 PGKKVMKAKDFWNGLRGQ 332 (334)
T ss_pred CCCCCCcHHHHhcCCCCC
Confidence 999999999999998764
No 5
>PRK06988 putative formyltransferase; Provisional
Probab=100.00 E-value=2.3e-51 Score=363.50 Aligned_cols=229 Identities=20% Similarity=0.282 Sum_probs=212.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHH
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHK 80 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~ 80 (258)
|||+||||++||.++|+.|+++++++++|+|+||++.+ +..+++++++|+++|||++++.+++++ ++++
T Consensus 3 mkIvf~Gs~~~a~~~L~~L~~~~~~i~~Vvt~~d~~~~---~~~~~~v~~~A~~~gip~~~~~~~~~~--------~~~~ 71 (312)
T PRK06988 3 PRAVVFAYHNVGVRCLQVLLARGVDVALVVTHEDNPTE---NIWFGSVAAVAAEHGIPVITPADPNDP--------ELRA 71 (312)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCCEEEEEcCCCCCcc---CcCCCHHHHHHHHcCCcEEccccCCCH--------HHHH
Confidence 79999999999999999999999999999999998874 467789999999999999999888776 8899
Q ss_pred HHhcCCCcEEEEE-------------------------------------------------------------------
Q psy5230 81 LLNKIEFDIMIVM------------------------------------------------------------------- 93 (258)
Q Consensus 81 ~l~~~~~Dl~vv~------------------------------------------------------------------- 93 (258)
.+++.+||++|++
T Consensus 72 ~l~~~~~Dliv~~~~~~iip~~il~~~~~g~iNiHpslLP~yRG~~pi~~ai~~g~~~tGvTih~~~~~~D~G~Il~q~~ 151 (312)
T PRK06988 72 AVAAAAPDFIFSFYYRHMIPVDLLALAPRGAYNMHGSLLPKYRGRVPVNWAVLNGETETGATLHEMVAKPDAGAIVDQTA 151 (312)
T ss_pred HHHhcCCCEEEEehhccccCHHHHhcCCCCEEEeeCccccCCCCcCHHHHHHHcCCCceEEEEEEECCCCCCCCeEEEEE
Confidence 9999999999988
Q ss_pred -eeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCcCCCCCcccccccccccHHHHHHHHhhcC-C
Q psy5230 94 -GILPEDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLIKKNEAVLDWSLSAKTIMRKINAFN-P 171 (258)
Q Consensus 94 -~I~~~dt~~~L~~kl~~~g~~ll~~~l~~l~~~~g~~~~~~Q~~~~atya~k~~~~d~~IdW~~~a~~I~~~iRA~~-p 171 (258)
+|.++||+.+|++|++.++++++.++|..+.. |+++++||+++.+||++|++++|+.|||+++|++|+|+|||++ |
T Consensus 152 ~~I~~~dt~~~L~~kl~~~~~~ll~~~l~~l~~--g~~~~~~Q~~~~aty~~k~~~~d~~Idw~~~a~~I~~~iRA~~~p 229 (312)
T PRK06988 152 VPILPDDTAAQVFDKVTVAAEQTLWRVLPALLA--GEAPHLPNDLAQGSYFGGRKPEDGRIDWSKPAAQVYNLIRAVAPP 229 (312)
T ss_pred EecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHc--CCCCcccCCCCCceECCCCChHHeEECCCCCHHHHHHHhccCCCC
Confidence 99999999999999999999999999999998 8889999999999999999999999999999999999999998 9
Q ss_pred CCceEEEEEeccCCCceEEEEEEEEccCCCC----CCCcEEEEEeeCCcEEEEecCc----EEEEEEEecCCCCccCHHH
Q psy5230 172 FPGAKTYYISYQNKKKFLKIWKAHALSIEST----KKPGTILNVNFHNGILVVCGKN----VIKLLELQKNNKKKISATE 243 (258)
Q Consensus 172 ~pga~~~~~~~~~~g~~i~i~~a~~~~~~~~----~~pG~i~~~~~~~~l~V~c~dg----~l~i~~lq~~gkk~~~a~~ 243 (258)
|||||+++ + |++++|++++....... ..||+|+ . +++++|+|+|| .+.|.++|++|||+|++.+
T Consensus 230 ~pga~~~~---~--g~~v~i~~a~~~~~~~~~~~~~~pG~i~--~-~~~l~V~c~dg~~v~~l~i~~~q~~gkk~~~~~~ 301 (312)
T PRK06988 230 YPGAFTDL---G--GTRFVVARARLAAPGAAAARDLPPGLHV--S-DNALFGVCGDGRAVSILELRRQQDGGETVVTPAQ 301 (312)
T ss_pred CCeeEEEE---C--CEEEEEEEEEEccCCcccccCCCCCEEE--E-CCCEEEECCCCCCcceEEEEEEEcCCCCcCCHHH
Confidence 99999999 8 99999999997654322 4799996 4 68899999999 8999999999999999999
Q ss_pred HhccccC
Q psy5230 244 FINGCIK 250 (258)
Q Consensus 244 f~~g~~~ 250 (258)
|+||+.-
T Consensus 302 f~~~~~~ 308 (312)
T PRK06988 302 FAQFIHS 308 (312)
T ss_pred Hhhhccc
Confidence 9999764
No 6
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=100.00 E-value=6.2e-51 Score=394.45 Aligned_cols=236 Identities=20% Similarity=0.335 Sum_probs=221.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHH
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHK 80 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~ 80 (258)
|||+||||++||+++|++|++++++|++|+|+||++.+ +..+++|+++|+++|||++++.+++++ ++++
T Consensus 1 mkivf~g~~~~a~~~l~~L~~~~~~i~~V~t~pd~~~~---~~~~~~v~~~a~~~~ip~~~~~~~~~~--------~~~~ 69 (660)
T PRK08125 1 MKAVVFAYHDIGCVGIEALLAAGYEIAAVFTHTDNPGE---NHFFGSVARLAAELGIPVYAPEDVNHP--------LWVE 69 (660)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCcC---CCCcCHHHHHHHHcCCcEEeeCCCCcH--------HHHH
Confidence 99999999999999999999999999999999999875 567889999999999999999998876 8899
Q ss_pred HHhcCCCcEEEEE-------------------------------------------------------------------
Q psy5230 81 LLNKIEFDIMIVM------------------------------------------------------------------- 93 (258)
Q Consensus 81 ~l~~~~~Dl~vv~------------------------------------------------------------------- 93 (258)
.|++.+||++|++
T Consensus 70 ~l~~~~~D~iv~~~~~~ii~~~il~~~~~g~iN~H~slLP~yRG~~p~~wai~~g~~~~GvTi~~~~~~~D~G~I~~q~~ 149 (660)
T PRK08125 70 RIRELAPDVIFSFYYRNLLSDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQQR 149 (660)
T ss_pred HHHhcCCCEEEEccccccCCHHHHhhcCCCEEEEeCCcccCCCCcCHHHHHHHcCCCcEEEEEEEECCCccCCCeeEEEE
Confidence 9999999999988
Q ss_pred -eeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCcCCCCCcccccccccccHHHHHHHHhhcC-C
Q psy5230 94 -GILPEDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLIKKNEAVLDWSLSAKTIMRKINAFN-P 171 (258)
Q Consensus 94 -~I~~~dt~~~L~~kl~~~g~~ll~~~l~~l~~~~g~~~~~~Q~~~~atya~k~~~~d~~IdW~~~a~~I~~~iRA~~-p 171 (258)
+|+++||+.+|++||..++++++.++|..|.. ++++++||+++.+||++|++++|+.|||+++|++|+|+|||++ |
T Consensus 150 ~~i~~~dt~~~l~~~l~~~~~~l~~~~l~~i~~--~~~~~~~Q~~~~~ty~~~~~~~d~~Idw~~~a~~i~~~iRa~~~p 227 (660)
T PRK08125 150 VAIAPDDTALTLHHKLCHAARQLLEQTLPAIKH--GNIPEIPQDESQATYFGRRTPADGLIDWHKPASTLHNLVRAVTDP 227 (660)
T ss_pred EecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHc--CCCccccCCCCCceeCCCCCHHHeEECCCCCHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999999 9999999999999999999999999999999999999999998 9
Q ss_pred CCceEEEEEeccCCCceEEEEEEEEccCCCCCCCcEEEEEeeCCcEEEEecCcEEEEEEEecCCCCccCHHHHhccccCC
Q psy5230 172 FPGAKTYYISYQNKKKFLKIWKAHALSIESTKKPGTILNVNFHNGILVVCGKNVIKLLELQKNNKKKISATEFINGCIKN 251 (258)
Q Consensus 172 ~pga~~~~~~~~~~g~~i~i~~a~~~~~~~~~~pG~i~~~~~~~~l~V~c~dg~l~i~~lq~~gkk~~~a~~f~~g~~~~ 251 (258)
|||||+++ + |++++|++++..+......||+|+..+ +++|+|+||+|+|.++|++|||.|++.+|+||++++
T Consensus 228 ~pga~~~~---~--g~~~~i~~a~~~~~~~~~~pG~i~~~~---~~~v~~~dg~l~i~~~q~~g~~~~~~~~~~~g~~~~ 299 (660)
T PRK08125 228 WPGAFSYV---G--EQKFTVWSSRVLPDASGAQPGTVLSVA---PLRIACGEGALEIVTGQAGDGLYMQGSQLAQELGLV 299 (660)
T ss_pred CCceEEEE---C--CEEEEEEEEEEccCCCCCCCCEEEEeC---CEEEEeCCcEEEEEEEECCCCCccCHHHHhcCCCCC
Confidence 99999999 8 999999999986544445799998764 399999999999999999999999999999999999
Q ss_pred Cccccc
Q psy5230 252 IKYFIS 257 (258)
Q Consensus 252 ~g~~~~ 257 (258)
.|..+.
T Consensus 300 ~g~~~~ 305 (660)
T PRK08125 300 AGARLN 305 (660)
T ss_pred CCCEec
Confidence 998763
No 7
>KOG2452|consensus
Probab=99.96 E-value=1.7e-28 Score=218.95 Aligned_cols=229 Identities=21% Similarity=0.330 Sum_probs=202.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHH
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHK 80 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~ 80 (258)
|||+++|.+-|+..+..+|.++||++++|+|-||+.. +..++.--|++.|+||+.|.+++... +..+++++
T Consensus 1 mkiaiigqs~fg~~vy~~lrk~gheiv~vftipdk~g------~~d~l~~ea~kdgvpv~k~srwr~k~---~~lp~~~~ 71 (881)
T KOG2452|consen 1 MKIAVIGQSLFGQEVYCHLRKEGHEVVGVFTVPDKDG------KADPLGLEAEKDGVPVFKYSRWRAKA---QALPDVVA 71 (881)
T ss_pred CeeEEechhhhhHHHHHHHHhcCceEEEEEEecCCCC------CcCcccccccccCcceechhhhhhhc---cccHHHHH
Confidence 9999999999999999999999999999999998743 44678889999999999998876331 45569999
Q ss_pred HHhcCCCcEEEEE-------------------------------------------------------------------
Q psy5230 81 LLNKIEFDIMIVM------------------------------------------------------------------- 93 (258)
Q Consensus 81 ~l~~~~~Dl~vv~------------------------------------------------------------------- 93 (258)
.++.+..++-|..
T Consensus 72 ~y~~~gaelnvlpfcsqfip~ei~~ap~~~siiyhps~lp~hrgasainwtli~gd~~~g~sifwaddgldtg~~llqk~ 151 (881)
T KOG2452|consen 72 KYQALGAELNVLPFCSQFIPMEIISAPRHGSIIYHPSLLPRHRGASAINWTLIHGDKKGGFSIFWADDGLDTGDLLLQKE 151 (881)
T ss_pred HHHhhcccccccchhhhccchhhcccccCCceeeccccCccccCccccceEEEeccccCceEEEeecCCccccchhhhhh
Confidence 9999998887654
Q ss_pred -eeCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCcCCCCCcccccccccccHHHHHHHHhhcCC
Q psy5230 94 -GILPEDTSLTLQNK-LEKLSKILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLIKKNEAVLDWSLSAKTIMRKINAFNP 171 (258)
Q Consensus 94 -~I~~~dt~~~L~~k-l~~~g~~ll~~~l~~l~~~~g~~~~~~Q~~~~atya~k~~~~d~~IdW~~~a~~I~~~iRA~~p 171 (258)
.+.++||..+||+| |...|...+.+.++.|.. |+.++.+|++..|||-|-++++..+|||+++++.|+|+||+-+.
T Consensus 152 c~v~~~dt~~tly~rfl~p~gi~~v~~~v~lia~--gkapr~~qpeegasye~~~k~e~a~i~w~~~~~~~hn~irgndk 229 (881)
T KOG2452|consen 152 CEVLPDDTVSTLYNRFLFPEGIKGVVQAVRLIAE--GKAPRLPQPEEGATYEGIQKKETAKINWDQPAEAIHNWIRGNDK 229 (881)
T ss_pred cccCCCccHHHHHHhhcChHHHHHHHHHHHHHhc--CCCCCCCCcccCCcccccccchhhcCCccchHHHHHHHhhcCCC
Confidence 88999999999998 899999999999999999 99999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEeccCCCceEEEEEEEEccCC-----------CCCCCcEEEEEeeCCcEEEEecCc-EEEEEEEecCCCCcc
Q psy5230 172 FPGAKTYYISYQNKKKFLKIWKAHALSIE-----------STKKPGTILNVNFHNGILVVCGKN-VIKLLELQKNNKKKI 239 (258)
Q Consensus 172 ~pga~~~~~~~~~~g~~i~i~~a~~~~~~-----------~~~~pG~i~~~~~~~~l~V~c~dg-~l~i~~lq~~gkk~~ 239 (258)
-||||+.. + ++++.++........ ....||-| . +.+++.--.|| |+.+..+|.+.+|.+
T Consensus 230 vpgaw~~~---~--~~k~sff~s~l~~~g~~~~~da~~i~~~~~pg~v---~-~~gl~l~g~d~~~~~v~~i~~~d~k~i 300 (881)
T KOG2452|consen 230 VPGAWTEA---C--EQKLTFFNSTLNTSGLVPEGDALPIPGAHRPGVV---T-KAGLILFGNDDKMLLVKNIQLEDGKMI 300 (881)
T ss_pred CCcHHHHh---h--cceeeeeccccCCCCCCCCCCcccccccCCCcee---e-ccceEEEcCCCcEEEEEeEEecCCcEE
Confidence 99999999 8 999998887765431 24568844 3 67888887887 999999999999999
Q ss_pred CHHHHhcccc
Q psy5230 240 SATEFINGCI 249 (258)
Q Consensus 240 ~a~~f~~g~~ 249 (258)
.|+.|..|..
T Consensus 301 ~as~~~~ga~ 310 (881)
T KOG2452|consen 301 LASNFFKGAA 310 (881)
T ss_pred ehhhhccccc
Confidence 9999999874
No 8
>PF02911 Formyl_trans_C: Formyl transferase, C-terminal domain; InterPro: IPR005793 Methionyl-tRNA formyltransferase (2.1.2.9 from EC) transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. This family also includes formyltetrahydrofolate dehydrogenases, which produce formate from formyl-tetrahydrofolate. These enzymes contain an N-terminal domain in common with other formyl transferase enzymes (IPR002376 from INTERPRO). The C-terminal domain has an open beta-barrel fold [].; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3RFO_D 1Z7E_C 2BLN_A 1YRW_A 1FMT_A 2FMT_B 3Q0I_A 3R8X_A 3TQQ_A 2BW0_A ....
Probab=99.96 E-value=1.3e-28 Score=183.28 Aligned_cols=99 Identities=41% Similarity=0.738 Sum_probs=85.5
Q ss_pred CCCcccccccccccHHHHHHHHhhcCCCCceEEEEEeccCCCceEEEEEEEEccCCCCCC-CcEEEEEeeCCcEEEEecC
Q psy5230 145 LIKKNEAVLDWSLSAKTIMRKINAFNPFPGAKTYYISYQNKKKFLKIWKAHALSIESTKK-PGTILNVNFHNGILVVCGK 223 (258)
Q Consensus 145 k~~~~d~~IdW~~~a~~I~~~iRA~~p~pga~~~~~~~~~~g~~i~i~~a~~~~~~~~~~-pG~i~~~~~~~~l~V~c~d 223 (258)
|++++|+.|||+++|++|+|+|||++||||||+++ + |++++|+++++.+...... ||+|+..+ +++++|+|+|
T Consensus 1 KI~~~d~~Idw~~~A~~I~~~vRal~p~pga~~~~---~--~~~i~i~~~~~~~~~~~~~~pG~i~~~~-~~~l~V~~~d 74 (100)
T PF02911_consen 1 KITKEDGRIDWNQSAEEIYNLVRALNPYPGAFTTF---N--GKRIKILKAEPLEDDSSSNPPGTIVYID-KNGLLVACGD 74 (100)
T ss_dssp ---GGGGB--TTSBHHHHHHHHHHTTTTT-EEEEE---T--TEEEEEEEEEEEETTSSSSSTTBEEEEE-TTEEEEETSB
T ss_pred CCChHHeEECCCCCHHHHHHHHhCCCCCCCEEEee---C--CeEEEEEeeeecccccccccCceEEEEc-CCEEEEEECC
Confidence 78999999999999999999999999999999999 8 9999999999887654444 99999988 7899999999
Q ss_pred cEEEEEEEecCCCCccCHHHHhcccc
Q psy5230 224 NVIKLLELQKNNKKKISATEFINGCI 249 (258)
Q Consensus 224 g~l~i~~lq~~gkk~~~a~~f~~g~~ 249 (258)
|.|+|.++|++||++|+|.+|+||++
T Consensus 75 g~l~i~~~q~~gkk~~~a~~f~~g~r 100 (100)
T PF02911_consen 75 GALRIRELQPEGKKPMSAKDFLNGYR 100 (100)
T ss_dssp SEEEEEEEEETTS-EEEHHHHHHHH-
T ss_pred cEEEEEEEEcCCCCEEeHHHHHccCC
Confidence 99999999999999999999999975
No 9
>PRK07579 hypothetical protein; Provisional
Probab=99.92 E-value=6.7e-24 Score=179.80 Aligned_cols=92 Identities=12% Similarity=0.107 Sum_probs=85.5
Q ss_pred eeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCcCCCCCcccccccccc--cHHHHHHHHhhcC-
Q psy5230 94 GILPEDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLIKKNEAVLDWSL--SAKTIMRKINAFN- 170 (258)
Q Consensus 94 ~I~~~dt~~~L~~kl~~~g~~ll~~~l~~l~~~~g~~~~~~Q~~~~atya~k~~~~d~~IdW~~--~a~~I~~~iRA~~- 170 (258)
+|.++||+.+|++|++.++++++.++|.++.. |.+.+++|++..++|++|++++|+.|||++ +|++|+|+|||++
T Consensus 138 ~I~~~dt~~sL~~kl~~~~~~ll~e~L~~i~~--g~~~~~~q~~~~~~~~~k~~ked~~Idw~~~~~a~~I~n~IRAl~~ 215 (245)
T PRK07579 138 EIESWDSSGSVYARVMDIERELVLEHFDAIRD--GSYTAKKPATEGNLNSKKDFKQLREIDLDERGTFRHFINRLRALTH 215 (245)
T ss_pred EcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHc--CCCcccCCCCccccccccCChhheEECCCCCCCHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999 988999999888899999999999999996 6999999999998
Q ss_pred -CCCceEEEEEeccCCCceEEE
Q psy5230 171 -PFPGAKTYYISYQNKKKFLKI 191 (258)
Q Consensus 171 -p~pga~~~~~~~~~~g~~i~i 191 (258)
||||||++.. + |+++.+
T Consensus 216 ~P~PgA~~~~~--~--g~k~~~ 233 (245)
T PRK07579 216 DDYKNAYFVDE--S--GRKVFV 233 (245)
T ss_pred CCCCcEEEEEc--C--CcEEEE
Confidence 9999999763 6 888765
No 10
>KOG3082|consensus
Probab=99.82 E-value=3.7e-21 Score=163.86 Aligned_cols=231 Identities=21% Similarity=0.228 Sum_probs=178.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEcc-CCCCCCcccccchHHHH
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQP-ISLKLNGKYHKIANETH 79 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~-~~~~~~~~~~~~~~~~~ 79 (258)
+++.|+||+.|+.+.++.|+.. .+.+.+++.|+....|+++.-++|+...|...|+++..- +..+..
T Consensus 7 ~nv~~~~sd~~~~~~~~~l~~~-~~~~~iv~~pp~~~~~~k~~lpsP~a~~a~~k~la~~kl~p~~k~~----------- 74 (338)
T KOG3082|consen 7 LNVIFLGSDEFSIPILRKLIGC-VQRVRIVSAPPKRQSRRKEILPSPAAMEANAKGLAYIKLQPGWKNF----------- 74 (338)
T ss_pred cCcchhccccccchhhhhHHHH-HHhhhhccCCcchhhccCccCCCccccccccccceeeeccChhhcc-----------
Confidence 4688999999999999999885 577789999999999998889999999999999998532 111111
Q ss_pred HHHhcCCCcEEEEE------------------------------------------------------------------
Q psy5230 80 KLLNKIEFDIMIVM------------------------------------------------------------------ 93 (258)
Q Consensus 80 ~~l~~~~~Dl~vv~------------------------------------------------------------------ 93 (258)
..+...++|++|++
T Consensus 75 ~d~~~~~~~l~ItaSfGrllp~kll~~~pyg~iNVHPSLLPk~RGaAPV~~all~GD~~TGVTI~~i~p~rFD~G~ilAQ 154 (338)
T KOG3082|consen 75 HDLMRPDDQLAITASFGRLLPFKLLNQLPYGGINVHPSLLPKYRGAAPVQRALLNGDTLTGVTIQTIDPKRFDKGPILAQ 154 (338)
T ss_pred ccccCCCcceEEEeehhccCcHHHHhhCCcceeecChhhcccccCcchHHHHHhcCCcccceEEEEecccccccccceec
Confidence 14556788999988
Q ss_pred ---eeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCCCCC--cCCCCCcccccccccc-cHHHHHHHHh
Q psy5230 94 ---GILPEDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFFKPQSNIGES--YAPLIKKNEAVLDWSL-SAKTIMRKIN 167 (258)
Q Consensus 94 ---~I~~~dt~~~L~~kl~~~g~~ll~~~l~~l~~~~g~~~~~~Q~~~~at--ya~k~~~~d~~IdW~~-~a~~I~~~iR 167 (258)
+|++..|+.+|+.-|+..|+++|++.|.++.. +.-...+|+.+..| |+||+...+..|.|++ .|.+|...-|
T Consensus 155 ~~l~v~~~~t~~~L~~~Ls~~ga~lLir~l~~l~d--ql~~~~~Q~~~~~t~tyaPki~~~ea~~s~~e~~a~~I~~~~~ 232 (338)
T KOG3082|consen 155 EYLAVNPKETAPELTASLSSLGANLLIRSLYNLND--QLNTVKAQPHGRITDTYAPKIISKEAFISFQESWAKKITTEDA 232 (338)
T ss_pred ceeccCccccchHHHHHHHhccchhhHHhhccchh--hhhccccCcccchhhhcCccccccccccccCHHHHhhhhhHhH
Confidence 88999999999999999999999999999998 66666777666555 9999999999999986 6677777666
Q ss_pred hcCCCCceEEEEEeccCCCceEEEEEEE------E---ccCCCCCCCcEEEEEeeCCcEEEEecCc-EEEEEEEecCCCC
Q psy5230 168 AFNPFPGAKTYYISYQNKKKFLKIWKAH------A---LSIESTKKPGTILNVNFHNGILVVCGKN-VIKLLELQKNNKK 237 (258)
Q Consensus 168 A~~p~pga~~~~~~~~~~g~~i~i~~a~------~---~~~~~~~~pG~i~~~~~~~~l~V~c~dg-~l~i~~lq~~gkk 237 (258)
+.+ |++-.+.... + +...+.+.. . ........||++.+..++..+.+.|.+| ++.+.+++.+||+
T Consensus 233 ~i~-~~~~~a~~~l-~---~~~~l~~l~~~~~~~~t~~~~~~q~s~~~~~~~h~kk~~l~~~ckngs~l~vl~~~l~~kk 307 (338)
T KOG3082|consen 233 AIG-WESMLATQIL-N---KSRALLHLVCILNKKLTLYRKDPQHSTSGEDWYHMKKGSLILLCKNGSLLGVLDVVLVGKK 307 (338)
T ss_pred hhc-CcchhHHHHH-H---HhhhhhhHHHhhhhhccccccChhhcCcccceeeeccceEEEEecCCCceeeEEEEecccc
Confidence 665 5443321110 1 121221111 0 0112345689998877688899999996 9999999999999
Q ss_pred ccCHHHHhccccC
Q psy5230 238 KISATEFINGCIK 250 (258)
Q Consensus 238 ~~~a~~f~~g~~~ 250 (258)
.|+|.+|.||+..
T Consensus 308 ~i~a~~f~ng~~~ 320 (338)
T KOG3082|consen 308 GIRASAFNNGLLV 320 (338)
T ss_pred ceeeecccccccc
Confidence 9999999999876
No 11
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=99.50 E-value=9.4e-15 Score=120.12 Aligned_cols=102 Identities=34% Similarity=0.530 Sum_probs=79.3
Q ss_pred CeEEEE--cCCHHHHHHHHHHHhCCCc--EEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEc-------cCCCCCCc
Q psy5230 1 MKIIFA--GTSISAAAILDTLYNSEHN--IVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQ-------PISLKLNG 69 (258)
Q Consensus 1 mrI~f~--Gs~~fa~~~L~~L~~~~~~--i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~-------~~~~~~~~ 69 (258)
|||+|| |+++++..+|++|.+.+++ +++|+|+++++.|| ..|.+.+++... +.+..++
T Consensus 1 mrI~~~~Sg~~~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~- 69 (181)
T PF00551_consen 1 MRIVFFGSGSGSFLKALLEALKARGHNVEIVLVITNPDKPRGR----------SRAIKNGIPAQVADEKNFQPRSENDE- 69 (181)
T ss_dssp EEEEEEESSSSHHHHHHHHHHHTTSSEEEEEEEEESSTTTHHH----------HHHHHTTHHEEEHHGGGSSSHHHHHH-
T ss_pred CEEEEEEcCCCHHHHHHHHHHHhCCCCceEEEEeccccccccc----------cccccCCCCEEeccccCCCchHhhhh-
Confidence 899999 8889999999999998765 99999999887754 445555555422 2222223
Q ss_pred ccccchHHHHHHHhcCCCcEEEEE--------------------------------------------------------
Q psy5230 70 KYHKIANETHKLLNKIEFDIMIVM-------------------------------------------------------- 93 (258)
Q Consensus 70 ~~~~~~~~~~~~l~~~~~Dl~vv~-------------------------------------------------------- 93 (258)
++.+.+++.+||++|++
T Consensus 70 -------~~~~~l~~~~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHpslLP~yrG~~p~~~ai~~g~~~~G~Tvh~~~~~ 142 (181)
T PF00551_consen 70 -------ELLELLESLNPDLIVVAGYGRILPKEFLSIPPYGIINIHPSLLPKYRGASPIQWAILNGEKETGVTVHFMDEG 142 (181)
T ss_dssp -------HHHHHHHHTT-SEEEESS-SS---HHHHHHSTTSEEEEESSSTTTTBSSTHHHHHHHHTSSEEEEEEEEE-SS
T ss_pred -------HHHHHHHhhccceeehhhhHHHhhhhhhhcccccEEEEeecCCccCCCcchhhhhhcCCcceeeeEEEEeccc
Confidence 78899999999999988
Q ss_pred ------------eeCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy5230 94 ------------GILPEDTSLTLQNKLEKLSKILIIDTI 120 (258)
Q Consensus 94 ------------~I~~~dt~~~L~~kl~~~g~~ll~~~l 120 (258)
+|.++||+.+|++|+.+++.++|.+++
T Consensus 143 ~D~G~Ii~q~~~~i~~~dt~~~l~~r~~~~~~~~l~~ai 181 (181)
T PF00551_consen 143 LDAGPIIAQKKFPIEPDDTAESLYERLAEAEAELLVEAI 181 (181)
T ss_dssp TTTSEEEEEEEEE--TT--HHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999886
No 12
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=99.39 E-value=6.9e-12 Score=104.53 Aligned_cols=116 Identities=15% Similarity=0.144 Sum_probs=94.3
Q ss_pred CeEEEEcC--CHHHHHHHHHHHhCC--CcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEc--cCCCCCCcccccc
Q psy5230 1 MKIIFAGT--SISAAAILDTLYNSE--HNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQ--PISLKLNGKYHKI 74 (258)
Q Consensus 1 mrI~f~Gs--~~fa~~~L~~L~~~~--~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~--~~~~~~~~~~~~~ 74 (258)
|||++|-| +....++++++.+.+ ++|+.|||.... ..+.++|+++|||+++ +.+.++..+|
T Consensus 2 ~ki~vl~sg~gs~~~~ll~~~~~~~~~~~I~~vvs~~~~----------~~~~~~a~~~gIp~~~~~~~~~~~~~~~--- 68 (200)
T PRK05647 2 KRIVVLASGNGSNLQAIIDACAAGQLPAEIVAVISDRPD----------AYGLERAEAAGIPTFVLDHKDFPSREAF--- 68 (200)
T ss_pred ceEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEecCcc----------chHHHHHHHcCCCEEEECccccCchhHh---
Confidence 79999866 889999999998764 678888886321 2478999999999988 4444322111
Q ss_pred hHHHHHHHhcCCCcEEEEE-------------------------------------------------------------
Q psy5230 75 ANETHKLLNKIEFDIMIVM------------------------------------------------------------- 93 (258)
Q Consensus 75 ~~~~~~~l~~~~~Dl~vv~------------------------------------------------------------- 93 (258)
..++.++|++.+||++|++
T Consensus 69 ~~~~~~~l~~~~~D~iv~~~~~~ii~~~~l~~~~~~~iNiHpslLP~yrG~~p~~~ai~~g~~~tG~Tvh~~~~~~D~G~ 148 (200)
T PRK05647 69 DAALVEALDAYQPDLVVLAGFMRILGPTFVSAYEGRIINIHPSLLPSFPGLHTHEQALEAGVKVHGCTVHFVDEGLDTGP 148 (200)
T ss_pred HHHHHHHHHHhCcCEEEhHHhhhhCCHHHHhhccCCEEEEeCccccCCCCccHHHHHHHcCCCeEEEEEEEEcCCCcCCC
Confidence 1267888999999999988
Q ss_pred -------eeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q psy5230 94 -------GILPEDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLF 131 (258)
Q Consensus 94 -------~I~~~dt~~~L~~kl~~~g~~ll~~~l~~l~~~~g~~~ 131 (258)
+|+++||..+|+.|+..++.+++.++++.+.. |...
T Consensus 149 Ii~q~~~~i~~~dt~~~L~~kl~~~~~~ll~~~i~~l~~--g~~~ 191 (200)
T PRK05647 149 IIAQAAVPVLAGDTEESLAARVLEQEHRLYPLVVKWFAE--GRLK 191 (200)
T ss_pred eEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHc--CCcE
Confidence 99999999999999999999999999999998 7654
No 13
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=99.39 E-value=1.2e-11 Score=102.33 Aligned_cols=114 Identities=18% Similarity=0.232 Sum_probs=92.6
Q ss_pred CeEEEEcC--CHHHHHHHHHHHhCC--CcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEc--cCCCCCCcccccc
Q psy5230 1 MKIIFAGT--SISAAAILDTLYNSE--HNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQ--PISLKLNGKYHKI 74 (258)
Q Consensus 1 mrI~f~Gs--~~fa~~~L~~L~~~~--~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~--~~~~~~~~~~~~~ 74 (258)
|||++|.| ++...++++++.+.+ .+|++|++..+ . .++.++|+++|||+++ +.++++.+++
T Consensus 1 ~riail~sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~~--~--------~~~~~~A~~~gip~~~~~~~~~~~~~~~--- 67 (190)
T TIGR00639 1 KRIVVLISGNGSNLQAIIDACKEGKIPASVVLVISNKP--D--------AYGLERAAQAGIPTFVLSLKDFPSREAF--- 67 (190)
T ss_pred CeEEEEEcCCChhHHHHHHHHHcCCCCceEEEEEECCc--c--------chHHHHHHHcCCCEEEECccccCchhhh---
Confidence 79998876 889999999998765 47888888531 1 2468999999999986 4444422111
Q ss_pred hHHHHHHHhcCCCcEEEEE-------------------------------------------------------------
Q psy5230 75 ANETHKLLNKIEFDIMIVM------------------------------------------------------------- 93 (258)
Q Consensus 75 ~~~~~~~l~~~~~Dl~vv~------------------------------------------------------------- 93 (258)
..++.+++++.++|++|++
T Consensus 68 ~~~~~~~l~~~~~D~iv~~~~~~il~~~~l~~~~~~~iNiHpslLP~yrG~~p~~~ai~~g~~~tGvTih~v~~~~D~G~ 147 (190)
T TIGR00639 68 DQAIIEELRAHEVDLVVLAGFMRILGPTFLSRFAGRILNIHPSLLPAFPGLHAVEQALEAGVKESGCTVHYVDEEVDTGP 147 (190)
T ss_pred hHHHHHHHHhcCCCEEEEeCcchhCCHHHHhhccCCEEEEeCCcccCCCCccHHHHHHHcCCCeEEEEEEEEcCCCcCCC
Confidence 1278899999999999998
Q ss_pred -------eeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy5230 94 -------GILPEDTSLTLQNKLEKLSKILIIDTIKKIEYDMTK 129 (258)
Q Consensus 94 -------~I~~~dt~~~L~~kl~~~g~~ll~~~l~~l~~~~g~ 129 (258)
+|+++||+.+|++|+..++.+++.++++++.. |.
T Consensus 148 Ii~q~~~~i~~~dt~~~L~~k~~~~~~~l~~~~l~~~~~--g~ 188 (190)
T TIGR00639 148 IIAQAKVPILPEDTEETLEQRIHKQEHRIYPLAIAWFAQ--GR 188 (190)
T ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh--CC
Confidence 99999999999999999999999999999987 64
No 14
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=99.14 E-value=5.8e-10 Score=97.91 Aligned_cols=111 Identities=11% Similarity=0.153 Sum_probs=89.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHh---C---CCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCC-CCCccccc
Q psy5230 1 MKIIFAGTSISAAAILDTLYN---S---EHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISL-KLNGKYHK 73 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~---~---~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~-~~~~~~~~ 73 (258)
|||+||+|+. -.+|++|++ + +.+|++|+|.++ .++.+|+++|||++..+.- .+..+
T Consensus 90 ~ri~vl~Sg~--gsnl~al~~~~~~~~~~~~i~~visn~~------------~~~~lA~~~gIp~~~~~~~~~~~~~--- 152 (286)
T PRK06027 90 KRVVILVSKE--DHCLGDLLWRWRSGELPVEIAAVISNHD------------DLRSLVERFGIPFHHVPVTKETKAE--- 152 (286)
T ss_pred cEEEEEEcCC--CCCHHHHHHHHHcCCCCcEEEEEEEcCh------------hHHHHHHHhCCCEEEeccCccccch---
Confidence 7999999998 568888883 4 378999999643 3678899999999873321 11100
Q ss_pred chHHHHHHHhcCCCcEEEEE------------------------------------------------------------
Q psy5230 74 IANETHKLLNKIEFDIMIVM------------------------------------------------------------ 93 (258)
Q Consensus 74 ~~~~~~~~l~~~~~Dl~vv~------------------------------------------------------------ 93 (258)
...++.++++++++|++|++
T Consensus 153 ~~~~~~~~l~~~~~Dlivlagy~~il~~~~l~~~~~~iiNiHpSLLP~yrG~~~~~~ai~~G~~~tG~TiH~v~~~~D~G 232 (286)
T PRK06027 153 AEARLLELIDEYQPDLVVLARYMQILSPDFVARFPGRIINIHHSFLPAFKGAKPYHQAYERGVKLIGATAHYVTADLDEG 232 (286)
T ss_pred hHHHHHHHHHHhCCCEEEEecchhhcCHHHHhhccCCceecCcccCCCCCCCCHHHHHHHCCCCeEEEEEEEEcCCCcCC
Confidence 11156888999999999999
Q ss_pred --------eeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q psy5230 94 --------GILPEDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKL 130 (258)
Q Consensus 94 --------~I~~~dt~~~L~~kl~~~g~~ll~~~l~~l~~~~g~~ 130 (258)
+|.++||..+|.+|+..+..+++.++++.+.. +..
T Consensus 233 ~Ii~Q~~v~i~~~dt~~~L~~ri~~~E~~~~~~ai~~~~~--~~~ 275 (286)
T PRK06027 233 PIIEQDVIRVDHRDTAEDLVRAGRDVEKQVLARAVRWHLE--DRV 275 (286)
T ss_pred CcEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh--CCE
Confidence 99999999999999999999999999999998 643
No 15
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=99.10 E-value=2.5e-09 Score=89.45 Aligned_cols=114 Identities=18% Similarity=0.235 Sum_probs=85.7
Q ss_pred eEEEE--cCCHHHHHHHHHHHhCC--CcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCC--Ccccccch
Q psy5230 2 KIIFA--GTSISAAAILDTLYNSE--HNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKL--NGKYHKIA 75 (258)
Q Consensus 2 rI~f~--Gs~~fa~~~L~~L~~~~--~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~--~~~~~~~~ 75 (258)
||++| |++.-...+++++.+.. .++++|+|.-+ .....++|+++|||++++++.+. .. .-.
T Consensus 1 ki~vl~Sg~Gsn~~al~~~~~~~~l~~~i~~visn~~----------~~~~~~~A~~~gIp~~~~~~~~~~~~~---~~~ 67 (207)
T PLN02331 1 KLAVFVSGGGSNFRAIHDACLDGRVNGDVVVVVTNKP----------GCGGAEYARENGIPVLVYPKTKGEPDG---LSP 67 (207)
T ss_pred CEEEEEeCCChhHHHHHHHHHcCCCCeEEEEEEEeCC----------CChHHHHHHHhCCCEEEeccccCCCcc---cch
Confidence 46665 44455555556554433 58889998521 13468999999999998665431 00 001
Q ss_pred HHHHHHHhcCCCcEEEEE--------------------------------------------------------------
Q psy5230 76 NETHKLLNKIEFDIMIVM-------------------------------------------------------------- 93 (258)
Q Consensus 76 ~~~~~~l~~~~~Dl~vv~-------------------------------------------------------------- 93 (258)
.++.+.+++++||++|++
T Consensus 68 ~~~~~~l~~~~~Dliv~agy~~il~~~~l~~~~~~~iNiHpSLLP~yrG~g~~~~~v~~a~i~~g~~~tG~Tvh~v~~~~ 147 (207)
T PLN02331 68 DELVDALRGAGVDFVLLAGYLKLIPVELVRAYPRSILNIHPALLPAFGGKGYYGIKVHKAVIASGARYSGPTVHFVDEHY 147 (207)
T ss_pred HHHHHHHHhcCCCEEEEeCcchhCCHHHHhhCCCCEEEEeCccccCCCCCCcccchHHHHHHHcCCCeEEEEEEEECCCC
Confidence 178899999999999998
Q ss_pred -----------eeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q psy5230 94 -----------GILPEDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKL 130 (258)
Q Consensus 94 -----------~I~~~dt~~~L~~kl~~~g~~ll~~~l~~l~~~~g~~ 130 (258)
+|.++||..+|++|+..++.+++.++|+.+.. +..
T Consensus 148 D~G~Ii~Q~~~~I~~~dt~~~L~~r~~~~e~~ll~~al~~l~~--~~~ 193 (207)
T PLN02331 148 DTGRILAQRVVPVLATDTPEELAARVLHEEHQLYVEVVAALCE--ERI 193 (207)
T ss_pred CCCCeEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHc--CCc
Confidence 99999999999999999999999999999998 654
No 16
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=99.09 E-value=1.2e-09 Score=95.90 Aligned_cols=111 Identities=10% Similarity=0.081 Sum_probs=87.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHh------CCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCC-CCCCccccc
Q psy5230 1 MKIIFAGTSISAAAILDTLYN------SEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPIS-LKLNGKYHK 73 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~------~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~-~~~~~~~~~ 73 (258)
|||+||||+ +-.+|++|++ .+++|++|+|..+ .+..+|+++|||++..+. ..+..++
T Consensus 90 ~ri~vl~Sg--~g~nl~al~~~~~~~~~~~~i~~visn~~------------~~~~lA~~~gIp~~~~~~~~~~~~~~-- 153 (286)
T PRK13011 90 PKVLIMVSK--FDHCLNDLLYRWRIGELPMDIVGVVSNHP------------DLEPLAAWHGIPFHHFPITPDTKPQQ-- 153 (286)
T ss_pred ceEEEEEcC--CcccHHHHHHHHHcCCCCcEEEEEEECCc------------cHHHHHHHhCCCEEEeCCCcCchhhh--
Confidence 799999999 4678888884 2479999999411 267889999999986321 1111000
Q ss_pred chHHHHHHHhcCCCcEEEEE------------------------------------------------------------
Q psy5230 74 IANETHKLLNKIEFDIMIVM------------------------------------------------------------ 93 (258)
Q Consensus 74 ~~~~~~~~l~~~~~Dl~vv~------------------------------------------------------------ 93 (258)
..++.++|+++++|++|++
T Consensus 154 -~~~~~~~l~~~~~Dlivlagy~~il~~~~l~~~~~~iiNiHpSLLP~~rG~~~~~~ai~~G~~~tG~TvH~v~~~~D~G 232 (286)
T PRK13011 154 -EAQVLDVVEESGAELVVLARYMQVLSPELCRKLAGRAINIHHSFLPGFKGAKPYHQAYERGVKLIGATAHYVTDDLDEG 232 (286)
T ss_pred -HHHHHHHHHHhCcCEEEEeChhhhCCHHHHhhccCCeEEeccccCCCCCCCcHHHHHHHCCCCeEEEEEEEEcCCCcCC
Confidence 1156788999999999999
Q ss_pred --------eeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q psy5230 94 --------GILPEDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKL 130 (258)
Q Consensus 94 --------~I~~~dt~~~L~~kl~~~g~~ll~~~l~~l~~~~g~~ 130 (258)
+|.++||..+|.+|...+..+++.++++.+.. +..
T Consensus 233 ~Ii~Q~~v~I~~~dt~~~L~~r~~~~E~~~~~~ai~~~~~--~~~ 275 (286)
T PRK13011 233 PIIEQDVERVDHAYSPEDLVAKGRDVECLTLARAVKAHIE--RRV 275 (286)
T ss_pred CcEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh--CCe
Confidence 99999999999999999999999999999998 643
No 17
>PLN02828 formyltetrahydrofolate deformylase
Probab=98.90 E-value=5.2e-08 Score=84.37 Aligned_cols=108 Identities=18% Similarity=0.233 Sum_probs=82.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHhC------CCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEc-cCCC-CCCcccc
Q psy5230 1 MKIIFAGTSISAAAILDTLYNS------EHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQ-PISL-KLNGKYH 72 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~------~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~-~~~~-~~~~~~~ 72 (258)
|||++|.|..= .+|++|+.+ +.+|++|+|.++++.+ .++.++|+++|||++. +.+- +..
T Consensus 71 ~riavlvSg~g--~nl~~ll~~~~~g~l~~eI~~ViSn~~~~~~-------a~~~~~A~~~gIP~~~~~~~~~~~~---- 137 (268)
T PLN02828 71 YKIAVLASKQD--HCLIDLLHRWQDGRLPVDITCVISNHERGPN-------THVMRFLERHGIPYHYLPTTKENKR---- 137 (268)
T ss_pred cEEEEEEcCCC--hhHHHHHHhhhcCCCCceEEEEEeCCCCCCC-------chHHHHHHHcCCCEEEeCCCCCCCH----
Confidence 68888877532 256666553 3689999998876432 3789999999999973 3221 111
Q ss_pred cchHHHHHHHhcCCCcEEEEE-----------------------------------------------------------
Q psy5230 73 KIANETHKLLNKIEFDIMIVM----------------------------------------------------------- 93 (258)
Q Consensus 73 ~~~~~~~~~l~~~~~Dl~vv~----------------------------------------------------------- 93 (258)
..++++.++ ++|++|++
T Consensus 138 --e~~~~~~l~--~~DliVLAgym~IL~~~~l~~~~~riINIHpSlLP~f~Ga~p~~~Ai~~Gvk~tG~TvH~V~~~lD~ 213 (268)
T PLN02828 138 --EDEILELVK--GTDFLVLARYMQILSGNFLKGYGKDIINIHHGLLPSFKGGNPSKQAFDAGVKLIGATSHFVTEELDA 213 (268)
T ss_pred --HHHHHHHHh--cCCEEEEeeehHhCCHHHHhhccCCEEEecCccCCCCCCCcHHHHHHHcCCCeEEEEEEEEcCCCCC
Confidence 015667776 59999998
Q ss_pred ---------eeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5230 94 ---------GILPEDTSLTLQNKLEKLSKILIIDTIKKIEY 125 (258)
Q Consensus 94 ---------~I~~~dt~~~L~~kl~~~g~~ll~~~l~~l~~ 125 (258)
+|.++||.++|..|+..+...++.++++.+..
T Consensus 214 GpII~Q~~v~V~~~dt~~~L~~r~~~~E~~~l~~av~~~~~ 254 (268)
T PLN02828 214 GPIIEQMVERVSHRDNLRSFVQKSENLEKQCLAKAIKSYCE 254 (268)
T ss_pred CCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999987
No 18
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=98.82 E-value=4.9e-08 Score=85.38 Aligned_cols=111 Identities=12% Similarity=0.145 Sum_probs=86.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhC---C---CcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCC-CCccccc
Q psy5230 1 MKIIFAGTSISAAAILDTLYNS---E---HNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLK-LNGKYHK 73 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~---~---~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~-~~~~~~~ 73 (258)
|||++|.|.. -.+|++|+++ | .+|++|+|.- ..+..+|+++|||++..+..+ +.. +
T Consensus 85 ~ki~vl~Sg~--g~nl~~l~~~~~~g~l~~~i~~visn~------------~~~~~~A~~~gIp~~~~~~~~~~~~---~ 147 (280)
T TIGR00655 85 KRVAILVSKE--DHCLGDLLWRWYSGELDAEIALVISNH------------EDLRSLVERFGIPFHYIPATKDNRV---E 147 (280)
T ss_pred cEEEEEEcCC--ChhHHHHHHHHHcCCCCcEEEEEEEcC------------hhHHHHHHHhCCCEEEcCCCCcchh---h
Confidence 6899998875 2356666653 2 5899999852 125678999999998866421 110 1
Q ss_pred chHHHHHHHhcCCCcEEEEE------------------------------------------------------------
Q psy5230 74 IANETHKLLNKIEFDIMIVM------------------------------------------------------------ 93 (258)
Q Consensus 74 ~~~~~~~~l~~~~~Dl~vv~------------------------------------------------------------ 93 (258)
...++.++|+++++|++|++
T Consensus 148 ~e~~~~~~l~~~~~Dlivlagym~il~~~~l~~~~~~iINiHpSLLP~f~G~~p~~~ai~~G~k~tG~TvH~V~e~lD~G 227 (280)
T TIGR00655 148 HEKRQLELLKQYQVDLVVLAKYMQILSPDFVKRYPNKIINIHHSFLPAFIGANPYQRAYERGVKIIGATAHYVTEELDEG 227 (280)
T ss_pred hHHHHHHHHHHhCCCEEEEeCchhhCCHHHHhhccCCEEEecCCcCCCCCCcCHHHHHHHcCCCeEEEEEEEEcCCCcCC
Confidence 11267889999999999999
Q ss_pred --------eeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q psy5230 94 --------GILPEDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKL 130 (258)
Q Consensus 94 --------~I~~~dt~~~L~~kl~~~g~~ll~~~l~~l~~~~g~~ 130 (258)
+|.++||..+|.+|...+..+++.++++.+.. +..
T Consensus 228 pII~Q~~v~I~~~dt~~~L~~ri~~~E~~~~~~ai~~~~~--~~~ 270 (280)
T TIGR00655 228 PIIEQDVVRVDHTDNVEDLIRAGRDIEKVVLARAVKLHLE--DRV 270 (280)
T ss_pred CeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh--CCe
Confidence 99999999999999999999999999999998 643
No 19
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=98.77 E-value=6.9e-08 Score=84.81 Aligned_cols=111 Identities=12% Similarity=0.171 Sum_probs=84.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhC------CCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCC-CCCccccc
Q psy5230 1 MKIIFAGTSISAAAILDTLYNS------EHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISL-KLNGKYHK 73 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~------~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~-~~~~~~~~ 73 (258)
|||++|+|.. -.+|++|+++ +.+|++|+|.- +.+.++|+++|||++..+.- .+.. +
T Consensus 94 ~kiavl~Sg~--g~nl~al~~~~~~~~l~~~i~~visn~------------~~~~~~A~~~gIp~~~~~~~~~~~~---~ 156 (289)
T PRK13010 94 PKVVIMVSKF--DHCLNDLLYRWRMGELDMDIVGIISNH------------PDLQPLAVQHDIPFHHLPVTPDTKA---Q 156 (289)
T ss_pred eEEEEEEeCC--CccHHHHHHHHHCCCCCcEEEEEEECC------------hhHHHHHHHcCCCEEEeCCCccccc---c
Confidence 7899998875 2255555542 26899999852 13679999999999853211 1110 0
Q ss_pred chHHHHHHHhcCCCcEEEEE------------------------------------------------------------
Q psy5230 74 IANETHKLLNKIEFDIMIVM------------------------------------------------------------ 93 (258)
Q Consensus 74 ~~~~~~~~l~~~~~Dl~vv~------------------------------------------------------------ 93 (258)
...++.++|+++++|++|++
T Consensus 157 ~~~~~~~~l~~~~~Dlivlagym~il~~~~l~~~~~~iiNiHpSlLP~f~G~~~~~~ai~~G~k~tG~TvH~v~~~lD~G 236 (289)
T PRK13010 157 QEAQILDLIETSGAELVVLARYMQVLSDDLSRKLSGRAINIHHSFLPGFKGARPYHQAHARGVKLIGATAHFVTDDLDEG 236 (289)
T ss_pred hHHHHHHHHHHhCCCEEEEehhhhhCCHHHHhhccCCceeeCcccCCCCCCCCHHHHHHHcCCCeEEEEEEEEcCCCCCC
Confidence 11167889999999999999
Q ss_pred --------eeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q psy5230 94 --------GILPEDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKL 130 (258)
Q Consensus 94 --------~I~~~dt~~~L~~kl~~~g~~ll~~~l~~l~~~~g~~ 130 (258)
+|.++||.++|.+|...+..+++.++++.+.. +..
T Consensus 237 pII~Q~~v~V~~~dt~e~L~~r~~~~E~~~l~~ai~~~~~--~~~ 279 (289)
T PRK13010 237 PIIEQDVERVDHSYSPEDLVAKGRDVECLTLARAVKAFIE--HRV 279 (289)
T ss_pred CceEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh--CCE
Confidence 99999999999999999999999999999988 643
No 20
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=98.58 E-value=1.9e-06 Score=70.46 Aligned_cols=116 Identities=18% Similarity=0.198 Sum_probs=85.7
Q ss_pred CeEEEEcC--CHHHHHHHHHHHhC--CCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccC--CCCCCcccccc
Q psy5230 1 MKIIFAGT--SISAAAILDTLYNS--EHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPI--SLKLNGKYHKI 74 (258)
Q Consensus 1 mrI~f~Gs--~~fa~~~L~~L~~~--~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~--~~~~~~~~~~~ 74 (258)
|||++|-| ++--..++++.... ..+|.+|++. ++ ..+..+.|.++|||.+..+ ...+.. +.
T Consensus 1 ~ki~VlaSG~GSNlqaiida~~~~~~~a~i~~Visd--~~--------~A~~lerA~~~gIpt~~~~~k~~~~r~---~~ 67 (200)
T COG0299 1 KKIAVLASGNGSNLQAIIDAIKGGKLDAEIVAVISD--KA--------DAYALERAAKAGIPTVVLDRKEFPSRE---AF 67 (200)
T ss_pred CeEEEEEeCCcccHHHHHHHHhcCCCCcEEEEEEeC--CC--------CCHHHHHHHHcCCCEEEeccccCCCHH---HH
Confidence 67887744 43333444444422 2579999985 21 2467999999999975543 332221 23
Q ss_pred hHHHHHHHhcCCCcEEEEE-------------------------------------------------------------
Q psy5230 75 ANETHKLLNKIEFDIMIVM------------------------------------------------------------- 93 (258)
Q Consensus 75 ~~~~~~~l~~~~~Dl~vv~------------------------------------------------------------- 93 (258)
..++.+.|++.+||++|.+
T Consensus 68 d~~l~~~l~~~~~dlvvLAGyMrIL~~~fl~~~~grIlNIHPSLLP~f~G~h~~~~A~~aG~k~sG~TVH~V~e~vD~Gp 147 (200)
T COG0299 68 DRALVEALDEYGPDLVVLAGYMRILGPEFLSRFEGRILNIHPSLLPAFPGLHAHEQALEAGVKVSGCTVHFVTEGVDTGP 147 (200)
T ss_pred HHHHHHHHHhcCCCEEEEcchHHHcCHHHHHHhhcceEecCcccccCCCCchHHHHHHHcCCCccCcEEEEEccCCCCCC
Confidence 3378899999999999988
Q ss_pred -------eeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q psy5230 94 -------GILPEDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLF 131 (258)
Q Consensus 94 -------~I~~~dt~~~L~~kl~~~g~~ll~~~l~~l~~~~g~~~ 131 (258)
||.++||.++|.+|+-....+++.++++.+.. |.+.
T Consensus 148 II~Q~~Vpv~~~Dt~etl~~RV~~~Eh~lyp~~v~~~~~--g~~~ 190 (200)
T COG0299 148 IIAQAAVPVLPGDTAETLEARVLEQEHRLYPLAVKLLAE--GRLK 190 (200)
T ss_pred eEEEEeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHh--Ccce
Confidence 99999999999999999999999999999998 7543
No 21
>KOG3076|consensus
Probab=97.60 E-value=0.0028 Score=51.57 Aligned_cols=111 Identities=17% Similarity=0.266 Sum_probs=81.4
Q ss_pred EEEEcCCHHHHHHHHHHHhC--------CCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCC--CCCCcccc
Q psy5230 3 IIFAGTSISAAAILDTLYNS--------EHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPIS--LKLNGKYH 72 (258)
Q Consensus 3 I~f~Gs~~fa~~~L~~L~~~--------~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~--~~~~~~~~ 72 (258)
++|=||++ -|++|++. ..+|+.|+|.... ..-.+.|.++|||+.-.+. +.+..
T Consensus 11 vliSGtGs----NlqaLid~~r~~~l~~~a~VvlviSnk~~----------~~GL~rA~~~gIPt~vip~k~~a~R~--- 73 (206)
T KOG3076|consen 11 VLISGTGS----NLQALIDATRDGSLGPNADVVLVISNKKG----------VYGLERAADAGIPTLVIPHKRFASRE--- 73 (206)
T ss_pred EEEecCch----hHHHHHHhhcCCCcCCCceEEEEEecccc----------chhhhHHHHCCCCEEEeccccccccc---
Confidence 45556654 46677763 2579999986321 1236899999999843322 22211
Q ss_pred cchHHHHHHHhcCCCcEEEEE-----------------------------------------------------------
Q psy5230 73 KIANETHKLLNKIEFDIMIVM----------------------------------------------------------- 93 (258)
Q Consensus 73 ~~~~~~~~~l~~~~~Dl~vv~----------------------------------------------------------- 93 (258)
....++.+.|.++.+|+++.+
T Consensus 74 ~~d~eL~~~l~e~~~d~v~lAG~M~iLs~~fl~~~~~~iiNIHPaLlpaFkG~~a~k~Aleagv~~~GctvHfV~EevD~ 153 (206)
T KOG3076|consen 74 KYDNELAEVLLELGTDLVCLAGYMRILSGEFLSQLPKRIINIHPALLPAFKGLHAIKQALEAGVKLSGCTVHFVIEEVDT 153 (206)
T ss_pred cCcHHHHHHHHHhCCCEEEehhhHHHcCHHHHhhcccceEecccccccccCCchHHHHHHHhccccccceEEEehhhccC
Confidence 122388888999999999988
Q ss_pred ---------eeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q psy5230 94 ---------GILPEDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFF 132 (258)
Q Consensus 94 ---------~I~~~dt~~~L~~kl~~~g~~ll~~~l~~l~~~~g~~~~ 132 (258)
+|.++||..+|.+|...+...++++++..+.+ +....
T Consensus 154 G~iI~q~~v~V~~~Dt~esl~qrv~~aEH~~~~~Ai~~v~~--~~~~~ 199 (206)
T KOG3076|consen 154 GPIIAQMAVPVIPGDTLESLEQRVHDAEHKAFVEAIKAVCE--GRVLP 199 (206)
T ss_pred CCceEEEeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--hccee
Confidence 99999999999999999999999999999988 65433
No 22
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.81 E-value=0.0059 Score=45.96 Aligned_cols=67 Identities=19% Similarity=0.309 Sum_probs=51.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhC--CCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHH
Q psy5230 1 MKIIFAGTSISAAAILDTLYNS--EHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANET 78 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~--~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~ 78 (258)
|||+++|.+.++..-+..+.+. +.++++|+.. + +....+++++.|+++|. ++
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~-~----------~~~~~~~~~~~~~~~~~---------------~~ 54 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDP-D----------PERAEAFAEKYGIPVYT---------------DL 54 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECS-S----------HHHHHHHHHHTTSEEES---------------SH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeC-C----------HHHHHHHHHHhcccchh---------------HH
Confidence 7999999999999999999887 3678888763 2 23467889999999654 33
Q ss_pred HHHHhcCCCcEEEEE
Q psy5230 79 HKLLNKIEFDIMIVM 93 (258)
Q Consensus 79 ~~~l~~~~~Dl~vv~ 93 (258)
-+.+.+.++|+++++
T Consensus 55 ~~ll~~~~~D~V~I~ 69 (120)
T PF01408_consen 55 EELLADEDVDAVIIA 69 (120)
T ss_dssp HHHHHHTTESEEEEE
T ss_pred HHHHHhhcCCEEEEe
Confidence 356666789999887
No 23
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=95.70 E-value=0.15 Score=43.99 Aligned_cols=78 Identities=17% Similarity=0.211 Sum_probs=51.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhC-----CCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccch
Q psy5230 1 MKIIFAGTSISAAAILDTLYNS-----EHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIA 75 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~-----~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~ 75 (258)
+||++|-|- ++....+-|.+. ..+|++||+.= ..++..++.+|||++..+--++. +. +..
T Consensus 91 ~ri~i~VSK-~~HCL~DLL~r~~~g~L~~eI~~VIsNH------------~dl~~~v~~~~IPfhhip~~~~~-k~-e~E 155 (287)
T COG0788 91 KRIAILVSK-EDHCLGDLLYRWRIGELPAEIVAVISNH------------DDLRPLVERFDIPFHHIPVTKEN-KA-EAE 155 (287)
T ss_pred ceEEEEEec-hHHHHHHHHHHHhcCCcCCceEEEEcCC------------HHHHHHHHHcCCCeeeccCCCCc-ch-HHH
Confidence 477777774 555334444342 37899999852 24889999999999875432221 00 111
Q ss_pred HHHHHHHhcCCCcEEEEE
Q psy5230 76 NETHKLLNKIEFDIMIVM 93 (258)
Q Consensus 76 ~~~~~~l~~~~~Dl~vv~ 93 (258)
....+.+.+.+.|++|.+
T Consensus 156 ~~~~~ll~~~~~DlvVLA 173 (287)
T COG0788 156 ARLLELLEEYGADLVVLA 173 (287)
T ss_pred HHHHHHHHHhCCCEEeeh
Confidence 166788899999999988
No 24
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.06 E-value=0.091 Score=44.59 Aligned_cols=72 Identities=19% Similarity=0.244 Sum_probs=54.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHH-HHHCCCcEEccCCCCCCcccccchHHHH
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKY-ALKHSIKIIQPISLKLNGKYHKIANETH 79 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~-A~~~gIpv~~~~~~~~~~~~~~~~~~~~ 79 (258)
|+|+++|-+.||..+.+.|.+.||+++.|-..++ .+.++ +.+.+..++.-+.. +. +.+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~------------~~~~~~~~~~~~~~v~gd~t-~~--------~~L 59 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE------------RVEEFLADELDTHVVIGDAT-DE--------DVL 59 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH------------HHHHHhhhhcceEEEEecCC-CH--------HHH
Confidence 8999999999999999999999999998877532 35563 44677777765443 23 666
Q ss_pred HHHhcCCCcEEEEE
Q psy5230 80 KLLNKIEFDIMIVM 93 (258)
Q Consensus 80 ~~l~~~~~Dl~vv~ 93 (258)
+.+--.++|++|++
T Consensus 60 ~~agi~~aD~vva~ 73 (225)
T COG0569 60 EEAGIDDADAVVAA 73 (225)
T ss_pred HhcCCCcCCEEEEe
Confidence 66666788988765
No 25
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=94.95 E-value=0.14 Score=36.77 Aligned_cols=49 Identities=16% Similarity=0.253 Sum_probs=37.8
Q ss_pred eEEEEcCCHHHHHHHHHHHhCC---CcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEc
Q psy5230 2 KIIFAGTSISAAAILDTLYNSE---HNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQ 61 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~---~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~ 61 (258)
||+|+|++.+|...++.|++++ +++..+..+ .+.-..+++.+.++.++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r-----------~~~~~~~~~~~~~~~~~~ 52 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR-----------SPEKAAELAKEYGVQATA 52 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES-----------SHHHHHHHHHHCTTEEES
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC-----------cHHHHHHHHHhhcccccc
Confidence 7999999999999999999998 677544332 123478889999876654
No 26
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=94.70 E-value=0.046 Score=49.38 Aligned_cols=48 Identities=13% Similarity=0.175 Sum_probs=37.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhC--CCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEE
Q psy5230 1 MKIIFAGTSISAAAILDTLYNS--EHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~--~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~ 60 (258)
+||+++|+ .|+..-+.++.+. ++++++|+... . .-.+++|+++|+|.|
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~-~----------erA~~~A~~~gi~~y 53 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQG-S----------ERSRALAHRLGVPLY 53 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCC-H----------HHHHHHHHHhCCCcc
Confidence 69999999 8998888888775 48899998742 1 225789999999854
No 27
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=93.97 E-value=0.42 Score=41.42 Aligned_cols=89 Identities=16% Similarity=0.270 Sum_probs=56.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHC-CCcEEccCCCCCCcccccchHHHH
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKH-SIKIIQPISLKLNGKYHKIANETH 79 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~-gIpv~~~~~~~~~~~~~~~~~~~~ 79 (258)
|||+++|....|..+.+.|.+.|+++++.++.+.. . +...+. +.+++ ...++.. ++.
T Consensus 1 m~ILvlGGT~egr~la~~L~~~g~~v~~s~~t~~~---~----------~~~~~~g~~~v~-~g~l~~~--------~l~ 58 (256)
T TIGR00715 1 MTVLLMGGTVDSRAIAKGLIAQGIEILVTVTTSEG---K----------HLYPIHQALTVH-TGALDPQ--------ELR 58 (256)
T ss_pred CeEEEEechHHHHHHHHHHHhCCCeEEEEEccCCc---c----------ccccccCCceEE-ECCCCHH--------HHH
Confidence 89999988667999999999999988776664321 1 112233 45664 4445444 777
Q ss_pred HHHhcCCCcEEEEEeeCCCCCHHHHHHHHHHHHHH
Q psy5230 80 KLLNKIEFDIMIVMGILPEDTSLTLQNKLEKLSKI 114 (258)
Q Consensus 80 ~~l~~~~~Dl~vv~~I~~~dt~~~L~~kl~~~g~~ 114 (258)
+.+++.++|++|-+ -+..+..+......++.+
T Consensus 59 ~~l~~~~i~~VIDA---tHPfA~~is~~a~~a~~~ 90 (256)
T TIGR00715 59 EFLKRHSIDILVDA---THPFAAQITTNATAVCKE 90 (256)
T ss_pred HHHHhcCCCEEEEc---CCHHHHHHHHHHHHHHHH
Confidence 89999999988643 133333444444444444
No 28
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.32 E-value=0.8 Score=33.94 Aligned_cols=69 Identities=13% Similarity=0.163 Sum_probs=46.9
Q ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHHH
Q psy5230 3 IIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKLL 82 (258)
Q Consensus 3 I~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~l 82 (258)
|+++|.+.++..+++.|.+.+.+++.|-..| ...+.+.+.|++++.-+. .+. +.++..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~-------------~~~~~~~~~~~~~i~gd~-~~~--------~~l~~a 58 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP-------------ERVEELREEGVEVIYGDA-TDP--------EVLERA 58 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH-------------HHHHHHHHTTSEEEES-T-TSH--------HHHHHT
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc-------------HHHHHHHhcccccccccc-hhh--------hHHhhc
Confidence 6899999999999999999544564443321 235667788888876443 233 667766
Q ss_pred hcCCCcEEEEE
Q psy5230 83 NKIEFDIMIVM 93 (258)
Q Consensus 83 ~~~~~Dl~vv~ 93 (258)
.-.++|.+|++
T Consensus 59 ~i~~a~~vv~~ 69 (116)
T PF02254_consen 59 GIEKADAVVIL 69 (116)
T ss_dssp TGGCESEEEEE
T ss_pred CccccCEEEEc
Confidence 66778877665
No 29
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=92.31 E-value=1.8 Score=35.72 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=30.6
Q ss_pred CeEEEEcCC-HHHHHHHHHHHhCCCcEEEEEcCCCC
Q psy5230 1 MKIIFAGTS-ISAAAILDTLYNSEHNIVLILTKPDL 35 (258)
Q Consensus 1 mrI~f~Gs~-~fa~~~L~~L~~~~~~i~~Vvt~pd~ 35 (258)
|||+++|-. ..+..+++...++||++.++|-.|.+
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K 36 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASK 36 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHh
Confidence 999999855 68999999999999999999987654
No 30
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=92.13 E-value=2.6 Score=35.31 Aligned_cols=91 Identities=13% Similarity=0.160 Sum_probs=58.0
Q ss_pred EEEEc-CCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHH
Q psy5230 3 IIFAG-TSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKL 81 (258)
Q Consensus 3 I~f~G-s~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~ 81 (258)
|+++| |+..|.+++++|++.++++.+++-.+ .+...+..+..|+.+++.+ +.+.. .+.+.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~-----------~~~~~~~l~~~g~~vv~~d-~~~~~-------~l~~a 61 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDP-----------SSDRAQQLQALGAEVVEAD-YDDPE-------SLVAA 61 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSS-----------HHHHHHHHHHTTTEEEES--TT-HH-------HHHHH
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEecc-----------chhhhhhhhcccceEeecc-cCCHH-------HHHHH
Confidence 67777 68999999999999888886555322 1233444566799887544 43331 56666
Q ss_pred HhcCCCcEEEEEeeCCCCCHHHHHHHHHHHHHH
Q psy5230 82 LNKIEFDIMIVMGILPEDTSLTLQNKLEKLSKI 114 (258)
Q Consensus 82 l~~~~~Dl~vv~~I~~~dt~~~L~~kl~~~g~~ 114 (258)
++ +.|.++++.-...+.......++.+++.+
T Consensus 62 l~--g~d~v~~~~~~~~~~~~~~~~~li~Aa~~ 92 (233)
T PF05368_consen 62 LK--GVDAVFSVTPPSHPSELEQQKNLIDAAKA 92 (233)
T ss_dssp HT--TCSEEEEESSCSCCCHHHHHHHHHHHHHH
T ss_pred Hc--CCceEEeecCcchhhhhhhhhhHHHhhhc
Confidence 76 67877766222236666666666666554
No 31
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=92.10 E-value=0.56 Score=37.61 Aligned_cols=66 Identities=20% Similarity=0.312 Sum_probs=46.4
Q ss_pred EEEEc-CCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHH
Q psy5230 3 IIFAG-TSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKL 81 (258)
Q Consensus 3 I~f~G-s~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~ 81 (258)
|+++| |+..|..+++.|+++++++.+++-.|. ...+ ..++.+++.+-.+.. .+.+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~------------~~~~---~~~~~~~~~d~~d~~--------~~~~a 57 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPS------------KAED---SPGVEIIQGDLFDPD--------SVKAA 57 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGG------------GHHH---CTTEEEEESCTTCHH--------HHHHH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCch------------hccc---ccccccceeeehhhh--------hhhhh
Confidence 68888 689999999999999999987765432 1222 677887765543222 55566
Q ss_pred HhcCCCcEEEEE
Q psy5230 82 LNKIEFDIMIVM 93 (258)
Q Consensus 82 l~~~~~Dl~vv~ 93 (258)
++ ++|.+|.+
T Consensus 58 l~--~~d~vi~~ 67 (183)
T PF13460_consen 58 LK--GADAVIHA 67 (183)
T ss_dssp HT--TSSEEEEC
T ss_pred hh--hcchhhhh
Confidence 66 67877766
No 32
>KOG2741|consensus
Probab=91.58 E-value=0.47 Score=42.56 Aligned_cols=70 Identities=21% Similarity=0.345 Sum_probs=51.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhC---CCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHH
Q psy5230 1 MKIIFAGTSISAAAILDTLYNS---EHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANE 77 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~---~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~ 77 (258)
+|+.|.|...++.....+|... +|.|++|.++. - .--+++|++||+| .+.-.. .
T Consensus 7 ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s-~----------~~A~~fAq~~~~~--~~k~y~----------s 63 (351)
T KOG2741|consen 7 IRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPS-L----------ERAKEFAQRHNIP--NPKAYG----------S 63 (351)
T ss_pred eEEEEeehhHHHHHHHHHhccCcccCcEEEEEeccc-H----------HHHHHHHHhcCCC--CCcccc----------C
Confidence 5899999999999888888754 58999998851 1 2258999999998 443221 3
Q ss_pred HHHHHhcCCCcEEEEE
Q psy5230 78 THKLLNKIEFDIMIVM 93 (258)
Q Consensus 78 ~~~~l~~~~~Dl~vv~ 93 (258)
+-+.+++-..|++++.
T Consensus 64 yEeLakd~~vDvVyi~ 79 (351)
T KOG2741|consen 64 YEELAKDPEVDVVYIS 79 (351)
T ss_pred HHHHhcCCCcCEEEeC
Confidence 3356677778987665
No 33
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=91.34 E-value=1 Score=39.12 Aligned_cols=49 Identities=18% Similarity=0.259 Sum_probs=35.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhC--CCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEE
Q psy5230 1 MKIIFAGTSISAAAILDTLYNS--EHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~--~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~ 60 (258)
|||+++|.+.++....+.|.+. ++++++|+.. +. ....+++.+.|.+++
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~-~~----------~~a~~~a~~~~~~~~ 52 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDR-NL----------EKAENLASKTGAKAC 52 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECC-CH----------HHHHHHHHhcCCeeE
Confidence 8999999999999999999876 3677777643 11 124566666666543
No 34
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=91.04 E-value=0.21 Score=37.45 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=31.9
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCC
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLH 36 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~ 36 (258)
||+++|+++.++.+++++.+.|++.+.|.|.||+.
T Consensus 4 kvLIanrGeia~r~~ra~r~~Gi~tv~v~s~~d~~ 38 (110)
T PF00289_consen 4 KVLIANRGEIAVRIIRALRELGIETVAVNSNPDTV 38 (110)
T ss_dssp EEEESS-HHHHHHHHHHHHHTTSEEEEEEEGGGTT
T ss_pred EEEEECCCHHHHHHHHHHHHhCCcceeccCchhcc
Confidence 79999999999999999999999999999988764
No 35
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=90.54 E-value=1.1 Score=41.73 Aligned_cols=72 Identities=11% Similarity=0.238 Sum_probs=47.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHH
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHK 80 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~ 80 (258)
|+|+++|.+.+|..+.+.|.+.|++++ ++... +..+.++.++.|++++.-+.. +. +.++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~-vid~~-----------~~~~~~~~~~~~~~~~~gd~~-~~--------~~l~ 59 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVT-VIDTD-----------EERLRRLQDRLDVRTVVGNGS-SP--------DVLR 59 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEE-EEECC-----------HHHHHHHHhhcCEEEEEeCCC-CH--------HHHH
Confidence 899999999999999999999889886 44421 112445544578887764322 22 4444
Q ss_pred HHhcCCCcEEEEE
Q psy5230 81 LLNKIEFDIMIVM 93 (258)
Q Consensus 81 ~l~~~~~Dl~vv~ 93 (258)
...-.++|.+|++
T Consensus 60 ~~~~~~a~~vi~~ 72 (453)
T PRK09496 60 EAGAEDADLLIAV 72 (453)
T ss_pred HcCCCcCCEEEEe
Confidence 4434467876654
No 36
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=90.12 E-value=0.78 Score=34.98 Aligned_cols=34 Identities=15% Similarity=0.268 Sum_probs=30.7
Q ss_pred CeEEEEcC-CHHHHHHHHHHHh-CCCcEEEEEcCCC
Q psy5230 1 MKIIFAGT-SISAAAILDTLYN-SEHNIVLILTKPD 34 (258)
Q Consensus 1 mrI~f~Gs-~~fa~~~L~~L~~-~~~~i~~Vvt~pd 34 (258)
|||++.|. +.+|..+.+.+.+ .++++++++.+++
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~ 36 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP 36 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC
Confidence 89999999 9999999999998 4699999998765
No 37
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=89.91 E-value=2.1 Score=40.29 Aligned_cols=82 Identities=10% Similarity=0.046 Sum_probs=52.0
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcE-EccCCCCCCcccccchHHHHH
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKI-IQPISLKLNGKYHKIANETHK 80 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv-~~~~~~~~~~~~~~~~~~~~~ 80 (258)
|++|+|-++.+....+.|.+.|.+++.+.|+-. ..+-.+....-+.+.+.+.|.+. .-.+.-+.. ++.+
T Consensus 316 rvai~Gdp~~~i~LarfL~elGmevV~vgt~~~--~~~~~~~d~~~l~~~~~~~~~~~~vive~~D~~--------el~~ 385 (457)
T CHL00073 316 SVFFMGDNLLEISLARFLIRCGMIVYEIGIPYM--DKRYQAAELALLEDTCRKMNVPMPRIVEKPDNY--------NQIQ 385 (457)
T ss_pred EEEEECCCcHHHHHHHHHHHCCCEEEEEEeCCC--ChhhhHHHHHHHHHHhhhcCCCCcEEEeCCCHH--------HHHH
Confidence 789999999999999999999999999988521 10000001111344444555431 111222222 7788
Q ss_pred HHhcCCCcEEEEE
Q psy5230 81 LLNKIEFDIMIVM 93 (258)
Q Consensus 81 ~l~~~~~Dl~vv~ 93 (258)
++++.+||++|.-
T Consensus 386 ~i~~~~pDLlIgG 398 (457)
T CHL00073 386 RIRELQPDLAITG 398 (457)
T ss_pred HHhhCCCCEEEcc
Confidence 8999999999865
No 38
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=89.85 E-value=1.3 Score=30.71 Aligned_cols=59 Identities=10% Similarity=0.244 Sum_probs=41.7
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCC-ccCCcHHHHHHHHCCCcEEcc
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGM-KLNFSPVKKYALKHSIKIIQP 62 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~-~~~~~~v~~~A~~~gIpv~~~ 62 (258)
||+++|.+..|+++-..|.+.+.++ .++...+... +.. ......+.++.+++||.++.-
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~v-tli~~~~~~~-~~~~~~~~~~~~~~l~~~gV~v~~~ 60 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEV-TLIERSDRLL-PGFDPDAAKILEEYLRKRGVEVHTN 60 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEE-EEEESSSSSS-TTSSHHHHHHHHHHHHHTTEEEEES
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEE-EEEeccchhh-hhcCHHHHHHHHHHHHHCCCEEEeC
Confidence 7999999999999999999998777 4555545444 211 111224667788889988653
No 39
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=89.31 E-value=1.7 Score=29.86 Aligned_cols=54 Identities=17% Similarity=0.252 Sum_probs=35.3
Q ss_pred CeEEEEcCCHH-----HHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEc
Q psy5230 1 MKIIFAGTSIS-----AAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQ 61 (258)
Q Consensus 1 mrI~f~Gs~~f-----a~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~ 61 (258)
|||+|.|+-+| -...|+.+++. +....+|+.- .++|- ..-..+||+++|+++..
T Consensus 4 ~rVli~GgR~~~D~~~i~~~Ld~~~~~-~~~~~lvhGg-a~~Ga-----D~iA~~wA~~~gv~~~~ 62 (71)
T PF10686_consen 4 MRVLITGGRDWTDHELIWAALDKVHAR-HPDMVLVHGG-APKGA-----DRIAARWARERGVPVIR 62 (71)
T ss_pred CEEEEEECCccccHHHHHHHHHHHHHh-CCCEEEEECC-CCCCH-----HHHHHHHHHHCCCeeEE
Confidence 89999999877 44556666665 3444466542 22331 22468899999999864
No 40
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=88.93 E-value=3.3 Score=35.16 Aligned_cols=94 Identities=17% Similarity=0.187 Sum_probs=54.1
Q ss_pred CeEEEE--cCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCC--ccCCcHHHHHHHHCCCcEEccCCCCCCcccccchH
Q psy5230 1 MKIIFA--GTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGM--KLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIAN 76 (258)
Q Consensus 1 mrI~f~--Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~--~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~ 76 (258)
||++.. |--+....++.++ ++ +++++++|--+....|-. .....-++..|+..|||.+....-.... ....
T Consensus 1 Mk~~~l~SGGKDS~~al~~a~-~~-~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~~~~e---~~~e 75 (223)
T TIGR00290 1 MKVAALISGGKDSCLALYHAL-KE-HEVISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYTEGTEE---DEVE 75 (223)
T ss_pred CcEEEEecCcHHHHHHHHHHH-Hh-CeeEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeecCCCcc---HHHH
Confidence 666533 3335555555555 44 899888774222222321 2233457889999999987522111111 1122
Q ss_pred HHHHHHhcCCCcEEEEEeeCCCC
Q psy5230 77 ETHKLLNKIEFDIMIVMGILPED 99 (258)
Q Consensus 77 ~~~~~l~~~~~Dl~vv~~I~~~d 99 (258)
++.+.++...+|.+|.-.|.-++
T Consensus 76 ~l~~~l~~~gv~~vv~GdI~s~~ 98 (223)
T TIGR00290 76 ELKGILHTLDVEAVVFGAIYSEY 98 (223)
T ss_pred HHHHHHHHcCCCEEEECCcccHH
Confidence 66677888888888777775443
No 41
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=88.88 E-value=1.7 Score=38.54 Aligned_cols=50 Identities=12% Similarity=0.084 Sum_probs=37.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhC-CCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEE
Q psy5230 1 MKIIFAGTSISAAAILDTLYNS-EHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~-~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~ 60 (258)
|||+++|++..+...+..|.+. +.++++|+.. |.. ++-.++|.++|++.+
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdi-d~e---------s~gla~A~~~Gi~~~ 55 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGI-DPE---------SDGLARARRLGVATS 55 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeC-Chh---------hHHHHHHHHcCCCcc
Confidence 6899999999999888888765 4788888764 211 123467999999874
No 42
>PLN02688 pyrroline-5-carboxylate reductase
Probab=88.65 E-value=2.5 Score=36.31 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=23.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCC
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEH 24 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~ 24 (258)
|||.|+|.+.++......|+++++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~ 24 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGV 24 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCC
Confidence 899999999999999999999886
No 43
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=88.56 E-value=2.6 Score=37.10 Aligned_cols=69 Identities=19% Similarity=0.206 Sum_probs=45.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhC-CCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHH
Q psy5230 1 MKIIFAGTSISAAAILDTLYNS-EHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETH 79 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~-~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~ 79 (258)
|||+++|++..+...+..|.+. +.++++|+.. +.. +.-.++|+++|++.+.. +.-
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~-d~e---------s~~la~A~~~Gi~~~~~--------------~~e 57 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGI-DPE---------SDGLARARELGVKTSAE--------------GVD 57 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeC-Ccc---------cHHHHHHHHCCCCEEEC--------------CHH
Confidence 7999999999999887777754 5788888763 211 11236889999987532 111
Q ss_pred HHHhcCCCcEEEEE
Q psy5230 80 KLLNKIEFDIMIVM 93 (258)
Q Consensus 80 ~~l~~~~~Dl~vv~ 93 (258)
+.+.+-++|+++.+
T Consensus 58 ~ll~~~dIDaV~ia 71 (285)
T TIGR03215 58 GLLANPDIDIVFDA 71 (285)
T ss_pred HHhcCCCCCEEEEC
Confidence 33444467877665
No 44
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=88.52 E-value=2.4 Score=38.68 Aligned_cols=35 Identities=3% Similarity=0.067 Sum_probs=29.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCC
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDL 35 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~ 35 (258)
|||+++|++..+...+.++.+.|++++.+-..|+.
T Consensus 13 ~~ilIiG~g~~~~~~~~a~~~~G~~v~~~~~~~~~ 47 (395)
T PRK09288 13 TRVMLLGSGELGKEVAIEAQRLGVEVIAVDRYANA 47 (395)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 68999999999999999999999999766665543
No 45
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=88.15 E-value=2.9 Score=35.43 Aligned_cols=49 Identities=16% Similarity=0.388 Sum_probs=32.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCC-cE--EEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcE
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEH-NI--VLILTKPDLHSGRGMKLNFSPVKKYALKHSIKI 59 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~-~i--~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv 59 (258)
|||+|+|.+.+|......|.++++ .+ +.++.+++ +...++++.+.++.+
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~----------~~~~~~~~~~~~~~~ 56 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSN----------VEKLDQLQARYNVST 56 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCC----------HHHHHHHHHHcCcEE
Confidence 689999999999999999988763 22 22333221 122566777777654
No 46
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=88.12 E-value=1.7 Score=40.57 Aligned_cols=86 Identities=16% Similarity=0.278 Sum_probs=54.6
Q ss_pred eEEEEcCCHHHHHHHHHHHhC---CCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHH
Q psy5230 2 KIIFAGTSISAAAILDTLYNS---EHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANET 78 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~---~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~ 78 (258)
|++++|+++-+....+.|.++ ++++++++...+...|+ . +|+|++.. . + ++
T Consensus 130 rvLIiGag~~~~~l~~~L~~~~~~g~~vvG~idd~~~~~~~-------------~-~gvpVlg~--~--~--------dl 183 (451)
T TIGR03023 130 RVLIVGAGELGRRLAERLARNPELGYRVVGFFDDRPDARTG-------------V-RGVPVLGK--L--D--------DL 183 (451)
T ss_pred cEEEEeCCHHHHHHHHHHHhCccCCcEEEEEEeCCCccccc-------------c-CCCCccCC--H--H--------HH
Confidence 689999999999999999764 48899998743222211 1 57777532 1 1 56
Q ss_pred HHHHhcCCCcEEEEE-eeCCCCCHHHHHHHHHHHHH
Q psy5230 79 HKLLNKIEFDIMIVM-GILPEDTSLTLQNKLEKLSK 113 (258)
Q Consensus 79 ~~~l~~~~~Dl~vv~-~I~~~dt~~~L~~kl~~~g~ 113 (258)
.+.+++.++|-++++ |-.+.+...++.+.+...+.
T Consensus 184 ~~~i~~~~vd~ViIA~p~~~~~~~~~ll~~~~~~gv 219 (451)
T TIGR03023 184 EELIREGEVDEVYIALPLAAEDRILELLDALEDLTV 219 (451)
T ss_pred HHHHHhcCCCEEEEeeCcccHHHHHHHHHHHHhcCC
Confidence 677777888877665 33333334445555544443
No 47
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=88.05 E-value=6 Score=36.73 Aligned_cols=49 Identities=12% Similarity=0.196 Sum_probs=38.0
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEc
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQ 61 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~ 61 (258)
|++|+|.++++.-+.++|.+.|..-+.|+.+ ......++|.+.|..+..
T Consensus 180 ~vlvIGAGem~~lva~~L~~~g~~~i~IaNR-----------T~erA~~La~~~~~~~~~ 228 (414)
T COG0373 180 KVLVIGAGEMGELVAKHLAEKGVKKITIANR-----------TLERAEELAKKLGAEAVA 228 (414)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCCEEEEEcC-----------CHHHHHHHHHHhCCeeec
Confidence 6999999999999999999998777667653 223467788888855443
No 48
>CHL00194 ycf39 Ycf39; Provisional
Probab=88.02 E-value=2.6 Score=37.28 Aligned_cols=30 Identities=13% Similarity=0.273 Sum_probs=26.6
Q ss_pred CeEEEEc-CCHHHHHHHHHHHhCCCcEEEEE
Q psy5230 1 MKIIFAG-TSISAAAILDTLYNSEHNIVLIL 30 (258)
Q Consensus 1 mrI~f~G-s~~fa~~~L~~L~~~~~~i~~Vv 30 (258)
|||+++| |+-.|..+.+.|+++||+|.+++
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~ 31 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLV 31 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEE
Confidence 8999999 67899999999999999987665
No 49
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=87.73 E-value=2.2 Score=37.85 Aligned_cols=68 Identities=16% Similarity=0.205 Sum_probs=47.6
Q ss_pred CeEEEEcCCHHHH-HHHHHHHhCC--CcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHH
Q psy5230 1 MKIIFAGTSISAA-AILDTLYNSE--HNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANE 77 (258)
Q Consensus 1 mrI~f~Gs~~fa~-~~L~~L~~~~--~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~ 77 (258)
|||+++|.+.++. .-+..+.+.+ .++++|+... +...+++|++.|++ .... +
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~-----------~~~a~~~a~~~~~~-~~~~-------------~ 58 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRD-----------PERAEAFAEEFGIA-KAYT-------------D 58 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCC-----------HHHHHHHHHHcCCC-cccC-------------C
Confidence 7999999986664 5677777765 4788887642 12368999999998 1111 3
Q ss_pred HHHHHhcCCCcEEEEE
Q psy5230 78 THKLLNKIEFDIMIVM 93 (258)
Q Consensus 78 ~~~~l~~~~~Dl~vv~ 93 (258)
+-+.|++-++|+++++
T Consensus 59 ~~~ll~~~~iD~V~Ia 74 (342)
T COG0673 59 LEELLADPDIDAVYIA 74 (342)
T ss_pred HHHHhcCCCCCEEEEc
Confidence 4456666678998887
No 50
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=87.71 E-value=4.9 Score=34.08 Aligned_cols=94 Identities=16% Similarity=0.150 Sum_probs=56.5
Q ss_pred CeEEEE--cCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCC--ccCCcHHHHHHHHCCCcEEccCCCCCCcccccchH
Q psy5230 1 MKIIFA--GTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGM--KLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIAN 76 (258)
Q Consensus 1 mrI~f~--Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~--~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~ 76 (258)
||++.. |--+.+..++..+. + +++++++|.-+....|.. .....-+...|+..|||.+....-. .|.....
T Consensus 1 Mkv~vl~SGGKDS~lAl~~~~~-~-~~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~~~~---~~e~~~~ 75 (222)
T TIGR00289 1 MKVAVLYSGGKDSILALYKALE-E-HEVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLYTSG---EEEKEVE 75 (222)
T ss_pred CeEEEEecCcHHHHHHHHHHHH-c-CeeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEEEcCC---chhHHHH
Confidence 777643 44467776666554 4 899888885333223322 2233467889999999976432111 1112222
Q ss_pred HHHHHHhcCCCcEEEEEeeCCCC
Q psy5230 77 ETHKLLNKIEFDIMIVMGILPED 99 (258)
Q Consensus 77 ~~~~~l~~~~~Dl~vv~~I~~~d 99 (258)
++.+.+++..++.+|.-.|.-++
T Consensus 76 ~l~~~l~~~gv~~vv~GdI~s~~ 98 (222)
T TIGR00289 76 DLAGQLGELDVEALCIGAIESNY 98 (222)
T ss_pred HHHHHHHHcCCCEEEECccccHH
Confidence 66677888888888777776443
No 51
>PRK08462 biotin carboxylase; Validated
Probab=87.46 E-value=1.5 Score=40.88 Aligned_cols=62 Identities=15% Similarity=0.108 Sum_probs=47.8
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCC------------CCC-ccC---CcHHHHHHHHCCCcEEccC
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSG------------RGM-KLN---FSPVKKYALKHSIKIIQPI 63 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~g------------r~~-~~~---~~~v~~~A~~~gIpv~~~~ 63 (258)
||+++|.++.++++.+++.+.|+++++|.+.+|.... .+. ... ...+.++|+++++..+-|.
T Consensus 6 ~ili~~~g~~~~~~~~~~~~~G~~~v~~~~~~d~~~~~~~~ad~~~~~~~~~~~~~y~~~~~l~~~~~~~~~D~i~pg 83 (445)
T PRK08462 6 RILIANRGEIALRAIRTIQEMGKEAIAIYSTADKDALYLKYADAKICIGGAKSSESYLNIPAIISAAEIFEADAIFPG 83 (445)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCCEEEEechhhcCCchhhhCCEEEEeCCCchhcccCCHHHHHHHHHHcCCCEEEEC
Confidence 8999999999999999999999999999998877421 110 001 1347888999998877664
No 52
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=87.22 E-value=2.5 Score=37.73 Aligned_cols=81 Identities=22% Similarity=0.264 Sum_probs=45.0
Q ss_pred CeEEEEcCCH-----HHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCC--CCCCc----
Q psy5230 1 MKIIFAGTSI-----SAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPIS--LKLNG---- 69 (258)
Q Consensus 1 mrI~f~Gs~~-----fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~--~~~~~---- 69 (258)
|||+|++.+. ++....+.|.+.||++. |++.++.. .....+++|++++..+. .....
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~-vv~~~~~~-----------~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 69 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVL-YLGTARGM-----------EARLVPKAGIEFHFIPSGGLRRKGSLAN 69 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEE-EEECCCch-----------hhhccccCCCcEEEEeccCcCCCChHHH
Confidence 8999996532 33456677778889885 45544321 12333346888765432 11000
Q ss_pred -----ccccchHHHHHHHhcCCCcEEEEE
Q psy5230 70 -----KYHKIANETHKLLNKIEFDIMIVM 93 (258)
Q Consensus 70 -----~~~~~~~~~~~~l~~~~~Dl~vv~ 93 (258)
++......+.+.+++.+||++++.
T Consensus 70 l~~~~~~~~~~~~~~~~ik~~~pDvv~~~ 98 (357)
T PRK00726 70 LKAPFKLLKGVLQARKILKRFKPDVVVGF 98 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEEC
Confidence 000111133456788899999987
No 53
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=87.21 E-value=2.3 Score=39.64 Aligned_cols=76 Identities=16% Similarity=0.039 Sum_probs=52.7
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHC----CCcEEccCCCCCCcccccchHH
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKH----SIKIIQPISLKLNGKYHKIANE 77 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~----gIpv~~~~~~~~~~~~~~~~~~ 77 (258)
|++++|.++.+...-+.|.+.|.+++.++|....+. ....++++..+. ++.++..... . +
T Consensus 305 rv~i~g~~~~~~~la~~L~elGm~v~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~v~~~~d~--~--------e 368 (435)
T cd01974 305 KFALYGDPDFLIGLTSFLLELGMEPVHVLTGNGGKR------FEKEMQALLDASPYGAGAKVYPGKDL--W--------H 368 (435)
T ss_pred EEEEEcChHHHHHHHHHHHHCCCEEEEEEeCCCCHH------HHHHHHHHHhhcCCCCCcEEEECCCH--H--------H
Confidence 788999999999999999999999999888543221 223355555542 3445433222 1 7
Q ss_pred HHHHHhcCCCcEEEEE
Q psy5230 78 THKLLNKIEFDIMIVM 93 (258)
Q Consensus 78 ~~~~l~~~~~Dl~vv~ 93 (258)
+.+.++..+||+++--
T Consensus 369 ~~~~i~~~~pDliiG~ 384 (435)
T cd01974 369 LRSLLFTEPVDLLIGN 384 (435)
T ss_pred HHHHHhhcCCCEEEEC
Confidence 7788899999999764
No 54
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=87.07 E-value=0.98 Score=39.59 Aligned_cols=29 Identities=17% Similarity=0.387 Sum_probs=23.8
Q ss_pred CeEEEEc-CCHHHHHHHHHHHhCCCcEEEE
Q psy5230 1 MKIIFAG-TSISAAAILDTLYNSEHNIVLI 29 (258)
Q Consensus 1 mrI~f~G-s~~fa~~~L~~L~~~~~~i~~V 29 (258)
|||+++| ++-.|..+.+.|.+.+++++++
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~ 30 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIAT 30 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEe
Confidence 9999999 5678888888888877776555
No 55
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=87.03 E-value=0.46 Score=35.05 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=24.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCC
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPD 34 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd 34 (258)
|||+++|++.--......|.++ ..+-.|++-|.
T Consensus 1 MkVLviGsGgREHAia~~l~~s-~~v~~v~~aPG 33 (100)
T PF02844_consen 1 MKVLVIGSGGREHAIAWKLSQS-PSVEEVYVAPG 33 (100)
T ss_dssp EEEEEEESSHHHHHHHHHHTTC-TTEEEEEEEE-
T ss_pred CEEEEECCCHHHHHHHHHHhcC-CCCCEEEEeCC
Confidence 9999999997777777788775 35556666554
No 56
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=86.64 E-value=17 Score=34.85 Aligned_cols=73 Identities=12% Similarity=0.015 Sum_probs=48.9
Q ss_pred eEEEEcCCHHHHHHHHHHH-hCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHH
Q psy5230 2 KIIFAGTSISAAAILDTLY-NSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHK 80 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~-~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~ 80 (258)
|++++|.+..+...-+.|. +.|.+++.+.|..... ...+++...+.+-.+.-.++. . ++.+
T Consensus 295 rv~I~gd~~~a~~l~~~L~~ElGm~vv~~gt~~~~~--------~~~~~~~~~~~~~~~~i~~D~--~--------el~~ 356 (519)
T PRK02910 295 RVFVFGDATHAVAAARILSDELGFEVVGAGTYLRED--------ARWVRAAAKEYGDEALITDDY--L--------EVED 356 (519)
T ss_pred EEEEEcCcHHHHHHHHHHHHhcCCeEEEEecCCcch--------hHHHHHHHHhcCCCeEEecCH--H--------HHHH
Confidence 7889999999999999998 6799998887743211 112444455444333221211 1 7778
Q ss_pred HHhcCCCcEEEE
Q psy5230 81 LLNKIEFDIMIV 92 (258)
Q Consensus 81 ~l~~~~~Dl~vv 92 (258)
.+++.+||+++-
T Consensus 357 ~i~~~~PdliiG 368 (519)
T PRK02910 357 AIAEAAPELVLG 368 (519)
T ss_pred HHHhcCCCEEEE
Confidence 889999999986
No 57
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=86.49 E-value=1.6 Score=38.08 Aligned_cols=49 Identities=27% Similarity=0.226 Sum_probs=34.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCC-CcE-EEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcE
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSE-HNI-VLILTKPDLHSGRGMKLNFSPVKKYALKHSIKI 59 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~-~~i-~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv 59 (258)
|||.|+|.+.++...+..|++++ ... --++|.|... ....++.+.|+..
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e----------~~~~l~~~~g~~~ 52 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEE----------KRAALAAEYGVVT 52 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHH----------HHHHHHHHcCCcc
Confidence 78999999999999999999998 331 1234443221 1345778887774
No 58
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=86.12 E-value=3.8 Score=31.58 Aligned_cols=66 Identities=21% Similarity=0.248 Sum_probs=45.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHC---CCcEEccCCCCCCcccccchHHH
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKH---SIKIIQPISLKLNGKYHKIANET 78 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~---gIpv~~~~~~~~~~~~~~~~~~~ 78 (258)
|++++|.+..|..+...|.+.|..-+.|+.+. ..-..+++++. ++.+...+.+
T Consensus 14 ~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt-----------~~ra~~l~~~~~~~~~~~~~~~~~------------- 69 (135)
T PF01488_consen 14 RVLVIGAGGAARAVAAALAALGAKEITIVNRT-----------PERAEALAEEFGGVNIEAIPLEDL------------- 69 (135)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSSEEEEEESS-----------HHHHHHHHHHHTGCSEEEEEGGGH-------------
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCEEEEEECC-----------HHHHHHHHHHcCccccceeeHHHH-------------
Confidence 79999999999999999999998877777642 12256677666 3444443322
Q ss_pred HHHHhcCCCcEEEEE
Q psy5230 79 HKLLNKIEFDIMIVM 93 (258)
Q Consensus 79 ~~~l~~~~~Dl~vv~ 93 (258)
.+.+. ++|++|.+
T Consensus 70 ~~~~~--~~DivI~a 82 (135)
T PF01488_consen 70 EEALQ--EADIVINA 82 (135)
T ss_dssp CHHHH--TESEEEE-
T ss_pred HHHHh--hCCeEEEe
Confidence 22332 58999887
No 59
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=85.95 E-value=7.8 Score=34.15 Aligned_cols=30 Identities=27% Similarity=0.512 Sum_probs=26.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEc
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILT 31 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt 31 (258)
|||.|+|.+.++.+.-..|+++||++ .|..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v-~v~~ 30 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEV-TVYN 30 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEE-EEEe
Confidence 79999999999999999999999887 3444
No 60
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=85.89 E-value=2.8 Score=36.49 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=22.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCC
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSE 23 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~ 23 (258)
|||.|+|.+.++......|++++
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g 26 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHAN 26 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCC
Confidence 89999999999999999999986
No 61
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=85.85 E-value=13 Score=32.78 Aligned_cols=29 Identities=17% Similarity=0.466 Sum_probs=25.5
Q ss_pred CeEEEEc-CCHHHHHHHHHHHhCCCcEEEE
Q psy5230 1 MKIIFAG-TSISAAAILDTLYNSEHNIVLI 29 (258)
Q Consensus 1 mrI~f~G-s~~fa~~~L~~L~~~~~~i~~V 29 (258)
|||++.| ++-.|..+.+.|++.|++++++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~ 30 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVIL 30 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCeEEEE
Confidence 8999999 5778999999999999998765
No 62
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=85.49 E-value=10 Score=35.23 Aligned_cols=44 Identities=5% Similarity=0.164 Sum_probs=33.6
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCC
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHS 56 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~g 56 (258)
||+++|+++.|..+...|.+.|..-+.|+.+.. .-...+|.+.+
T Consensus 183 kvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~-----------~ra~~La~~~~ 226 (414)
T PRK13940 183 NVLIIGAGQTGELLFRHVTALAPKQIMLANRTI-----------EKAQKITSAFR 226 (414)
T ss_pred EEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCH-----------HHHHHHHHHhc
Confidence 799999999999999999998877666766421 12466777765
No 63
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=85.29 E-value=2.2 Score=37.41 Aligned_cols=39 Identities=21% Similarity=0.305 Sum_probs=35.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHhC-CCcEEEEEcCCCCCCCC
Q psy5230 1 MKIIFAGTSISAAAILDTLYNS-EHNIVLILTKPDLHSGR 39 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~-~~~i~~Vvt~pd~~~gr 39 (258)
|+++..|++..++..++.|++. ++++++++.+.+...|+
T Consensus 3 ~~vvqyGtG~vGv~air~l~akpe~elvgawv~s~ak~Gk 42 (350)
T COG3804 3 LRVVQYGTGSVGVAAIRGLLAKPELELVGAWVHSAAKSGK 42 (350)
T ss_pred ceeEEeccchHHHHHHHHHHcCCCCceEEEEecCcccccc
Confidence 7899999999999999999987 79999999988888876
No 64
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=84.55 E-value=4 Score=35.59 Aligned_cols=46 Identities=11% Similarity=0.135 Sum_probs=34.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhC--CCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCC
Q psy5230 1 MKIIFAGTSISAAAILDTLYNS--EHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSI 57 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~--~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gI 57 (258)
|||+++|.+..+....+.|.+. ++++++|+.+. . ...++++.+.|.
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~-~----------~~a~~~a~~~g~ 54 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRD-P----------QRHADFIWGLRR 54 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCC-H----------HHHHHHHHhcCC
Confidence 6999999999999999999863 57887776631 1 124667777775
No 65
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=84.53 E-value=2.6 Score=39.36 Aligned_cols=86 Identities=16% Similarity=0.226 Sum_probs=55.7
Q ss_pred eEEEEcCCHHHHHHHHHHHhC---CCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHH
Q psy5230 2 KIIFAGTSISAAAILDTLYNS---EHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANET 78 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~---~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~ 78 (258)
|++++|+++-+..+++.|.++ ++++++++...+. .+ ..-+|+|++.. . + ++
T Consensus 127 rvLIvGag~~a~~l~~~L~~~~~~g~~vvG~idd~~~-~~-------------~~i~g~pVlg~--~--~--------~l 180 (445)
T TIGR03025 127 RVLIVGTGEAARELAAALSRNPDLGYRVVGFVDDRPS-DR-------------VEVAGLPVLGK--L--D--------DL 180 (445)
T ss_pred cEEEEECCHHHHHHHHHHhhCccCCeEEEEEEeCCcc-cc-------------cccCCCcccCC--H--H--------HH
Confidence 689999999999999999864 4889999863211 11 12357787532 1 1 56
Q ss_pred HHHHhcCCCcEEEEE-eeCCCCCHHHHHHHHHHHHH
Q psy5230 79 HKLLNKIEFDIMIVM-GILPEDTSLTLQNKLEKLSK 113 (258)
Q Consensus 79 ~~~l~~~~~Dl~vv~-~I~~~dt~~~L~~kl~~~g~ 113 (258)
.+.+++.+.|-++++ +-.+.+...++.+.+...+.
T Consensus 181 ~~~i~~~~id~ViIa~p~~~~~~~~~ll~~~~~~gv 216 (445)
T TIGR03025 181 VELVRAHRVDEVIIALPLSEEARILELLLQLRDLGV 216 (445)
T ss_pred HHHHHhCCCCEEEEecCcccHHHHHHHHHHHHhcCC
Confidence 677888888887766 32233344455555555543
No 66
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=84.49 E-value=3.1 Score=39.26 Aligned_cols=62 Identities=21% Similarity=0.192 Sum_probs=47.3
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCC---c------------cCCcHHHHHHHHCCCcEEccC
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGM---K------------LNFSPVKKYALKHSIKIIQPI 63 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~---~------------~~~~~v~~~A~~~gIpv~~~~ 63 (258)
||+++|.++.++++.+++.+.|+++++|.+.+|...-.-+ + +....+.++|+++++..+.|.
T Consensus 4 kvLi~~~geia~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~aD~~~~i~~~~~~~y~d~~~i~~~a~~~~~D~I~pg 80 (472)
T PRK07178 4 KILIANRGEIAVRIVRACAEMGIRSVAIYSEADRHALHVKRADEAYSIGADPLAGYLNPRRLVNLAVETGCDALHPG 80 (472)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCeEEEEeCCCccCCccHhhCCEEEEcCCCchhhhcCHHHHHHHHHHHCCCEEEeC
Confidence 8999999999999999999999999999988776432110 0 011247788888888887764
No 67
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=84.35 E-value=4.7 Score=37.40 Aligned_cols=71 Identities=14% Similarity=0.090 Sum_probs=47.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHC-CCcEEccCCCCCCcccccchHHHH
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKH-SIKIIQPISLKLNGKYHKIANETH 79 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~-gIpv~~~~~~~~~~~~~~~~~~~~ 79 (258)
++|+++|.+.+|..+.+.|.+.+++++.|=..| ..+.++..+. +++++.-+.. +. +.+
T Consensus 232 ~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~------------~~~~~~~~~~~~~~~i~gd~~-~~--------~~L 290 (453)
T PRK09496 232 KRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDP------------ERAEELAEELPNTLVLHGDGT-DQ--------ELL 290 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH------------HHHHHHHHHCCCCeEEECCCC-CH--------HHH
Confidence 579999999999999999999888875443322 2255555553 7777654332 33 555
Q ss_pred HHHhcCCCcEEEE
Q psy5230 80 KLLNKIEFDIMIV 92 (258)
Q Consensus 80 ~~l~~~~~Dl~vv 92 (258)
+...-.++|.+++
T Consensus 291 ~~~~~~~a~~vi~ 303 (453)
T PRK09496 291 EEEGIDEADAFIA 303 (453)
T ss_pred HhcCCccCCEEEE
Confidence 5555556787654
No 68
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=84.27 E-value=19 Score=34.40 Aligned_cols=74 Identities=12% Similarity=0.062 Sum_probs=46.6
Q ss_pred eEEEEcCCHHHHHHHHHHH-hCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHH
Q psy5230 2 KIIFAGTSISAAAILDTLY-NSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHK 80 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~-~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~ 80 (258)
|++++|.+..+...-+.|. +.|.+++++.|... . ....+++.+...+-.+.-.++. . ++.+
T Consensus 297 rv~I~gd~~~a~~l~~~L~~ElG~~vv~~gt~~~-~-------~~~~~~~~~~~~~~~~~i~dD~--~--------ei~~ 358 (511)
T TIGR01278 297 RAFVFGDATHAVGMTKILARELGIHIVGAGTYCK-Y-------DADWVREQVAGYVDEVLITDDF--Q--------EVAD 358 (511)
T ss_pred eEEEEcCcHHHHHHHHHHHHhCCCEEEecCCchh-h-------hHHHHHHHHHhcCCCeEEeCCH--H--------HHHH
Confidence 7899999999999999998 77999987766321 0 1112333333333222221111 1 6777
Q ss_pred HHhcCCCcEEEEE
Q psy5230 81 LLNKIEFDIMIVM 93 (258)
Q Consensus 81 ~l~~~~~Dl~vv~ 93 (258)
.+++.+||+++--
T Consensus 359 ~i~~~~pdliiG~ 371 (511)
T TIGR01278 359 AIAALEPELVLGT 371 (511)
T ss_pred HHHhcCCCEEEEC
Confidence 8889999999864
No 69
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=84.21 E-value=4.9 Score=34.49 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=23.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcE
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNI 26 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i 26 (258)
|||.|+|.+.++....+.|.+.++.+
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~ 26 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADV 26 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCh
Confidence 89999999999999999999887654
No 70
>PRK07680 late competence protein ComER; Validated
Probab=84.21 E-value=6.4 Score=34.10 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=22.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCC
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEH 24 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~ 24 (258)
|+|.|+|.+.+|......|.++++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~ 24 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGA 24 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCC
Confidence 899999999999999999998873
No 71
>COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=84.18 E-value=4.3 Score=35.63 Aligned_cols=86 Identities=16% Similarity=0.173 Sum_probs=60.0
Q ss_pred eEEEEcCCHHHHHHHHHHHhC--CCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEc-cCCCCCCcccccchHHH
Q psy5230 2 KIIFAGTSISAAAILDTLYNS--EHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQ-PISLKLNGKYHKIANET 78 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~--~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~-~~~~~~~~~~~~~~~~~ 78 (258)
+|+++|| .|+.--|.++... +++..++..+-.. | -.++|...|+|.|. ++.+-+
T Consensus 6 sVvV~Gt-rFGq~Ylaaf~~~~~~~eLaGiLaqGSe---R--------SRaLAh~~GVply~~~eelpd----------- 62 (361)
T COG4693 6 SVVVCGT-RFGQFYLAAFAAAPPRFELAGILAQGSE---R--------SRALAHRLGVPLYCEVEELPD----------- 62 (361)
T ss_pred eEEEecc-hHHHHHHHHhccCCCCceeehhhhcccH---H--------HHHHHHHhCCccccCHhhCCC-----------
Confidence 6889999 5999999998876 6889888876322 1 37899999999875 333322
Q ss_pred HHHHhcCCCcEEEEE---eeCCCCCHHHHHHHHHHHHHHHHHH
Q psy5230 79 HKLLNKIEFDIMIVM---GILPEDTSLTLQNKLEKLSKILIID 118 (258)
Q Consensus 79 ~~~l~~~~~Dl~vv~---~I~~~dt~~~L~~kl~~~g~~ll~~ 118 (258)
.+|+.-|+ .| -..+..+|.+-|...|...|.|
T Consensus 63 -------~idiACVvVrsai-~Gg~Gs~larall~RGi~VlqE 97 (361)
T COG4693 63 -------DIDIACVVVRSAI-VGGQGSALARALLARGIHVLQE 97 (361)
T ss_pred -------CCCeEEEEEeeee-ecCCcHHHHHHHHHcccHHHHh
Confidence 35665444 33 3556777877787777776543
No 72
>PRK06270 homoserine dehydrogenase; Provisional
Probab=84.16 E-value=5.9 Score=35.76 Aligned_cols=81 Identities=14% Similarity=0.122 Sum_probs=46.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhC----------CCcEEEEEcCCC---CCCCCCCccCCcHHHHHHHHCCCcEEccCCCCC
Q psy5230 1 MKIIFAGTSISAAAILDTLYNS----------EHNIVLILTKPD---LHSGRGMKLNFSPVKKYALKHSIKIIQPISLKL 67 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~----------~~~i~~Vvt~pd---~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~ 67 (258)
|||+++|.+..+...++.|.+. +.++++|+.... .+.|. ....+..++.+++.....+.....
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi----~~~~~~~~~~~~~~~~~~~~~~~~ 78 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGL----DLELALKVKEETGKLADYPEGGGE 78 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCC----CHHHHHHHHhccCCcccCcccccc
Confidence 6899999999999999998765 357788875310 11121 223345566666532211110001
Q ss_pred CcccccchHHHHHHHhcCCCcEEEEE
Q psy5230 68 NGKYHKIANETHKLLNKIEFDIMIVM 93 (258)
Q Consensus 68 ~~~~~~~~~~~~~~l~~~~~Dl~vv~ 93 (258)
. ++.+.+.+.++|++|.+
T Consensus 79 ~--------d~~ell~~~~~DvVvd~ 96 (341)
T PRK06270 79 I--------SGLEVIRSVDADVVVEA 96 (341)
T ss_pred C--------CHHHHhhccCCCEEEEC
Confidence 1 34455666677777664
No 73
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=84.11 E-value=10 Score=31.41 Aligned_cols=48 Identities=8% Similarity=0.144 Sum_probs=34.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEE
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~ 60 (258)
|+|++.|.+.+|..+.+.|.+.|++++ |.. .+ +..+.+++...|..++
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vv-v~D-~~----------~~~~~~~~~~~g~~~v 76 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLI-VAD-IN----------EEAVARAAELFGATVV 76 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEE-EEc-CC----------HHHHHHHHHHcCCEEE
Confidence 689999999999999999999999886 332 11 1235566666665544
No 74
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=83.70 E-value=4.2 Score=38.03 Aligned_cols=66 Identities=17% Similarity=0.330 Sum_probs=44.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhC---CCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHH
Q psy5230 2 KIIFAGTSISAAAILDTLYNS---EHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANET 78 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~---~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~ 78 (258)
|++++|+++.+..+++.|.++ ++++++++...+...|+ .-.|+|++.. . +.
T Consensus 127 rvlIiGag~~~~~l~~~l~~~~~~g~~vvGfidd~~~~~~~-------------~i~g~pVlg~-----~--------~l 180 (456)
T TIGR03022 127 PAVIIGAGQNAAILYRALQSNPQLGLRPLAVVDTDPAASGR-------------LLTGLPVVGA-----D--------DA 180 (456)
T ss_pred eEEEEeCCHHHHHHHHHHhhCccCCcEEEEEEeCCcccccc-------------ccCCCcccCh-----h--------HH
Confidence 689999999999999999754 58899998742222221 1246777543 1 55
Q ss_pred HHHHhcCCCcEEEEE
Q psy5230 79 HKLLNKIEFDIMIVM 93 (258)
Q Consensus 79 ~~~l~~~~~Dl~vv~ 93 (258)
.+.+++.+.|-++++
T Consensus 181 ~~~i~~~~id~ViIA 195 (456)
T TIGR03022 181 LRLYARTRYAYVIVA 195 (456)
T ss_pred HHHHHhCCCCEEEEe
Confidence 567777788865544
No 75
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=83.33 E-value=3.4 Score=36.50 Aligned_cols=81 Identities=20% Similarity=0.230 Sum_probs=44.2
Q ss_pred CeEEEEcCCHH-----HHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCC--CCCCcc---
Q psy5230 1 MKIIFAGTSIS-----AAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPIS--LKLNGK--- 70 (258)
Q Consensus 1 mrI~f~Gs~~f-----a~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~--~~~~~~--- 70 (258)
|||+|++...- +....+.|.+.||++.. +|.+... ...+..+.|++++..+. ....+.
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~v-v~~~~~~-----------~~~~~~~~g~~~~~i~~~~~~~~~~~~~ 68 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLW-LGTKRGL-----------EKRLVPKAGIEFYFIPVGGLRRKGSFRL 68 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEE-EeCCCcc-----------hhcccccCCCceEEEeccCcCCCChHHH
Confidence 89888755532 23567788888899754 4654311 11233446887765321 100000
Q ss_pred ------cccchHHHHHHHhcCCCcEEEEE
Q psy5230 71 ------YHKIANETHKLLNKIEFDIMIVM 93 (258)
Q Consensus 71 ------~~~~~~~~~~~l~~~~~Dl~vv~ 93 (258)
.......+.+.+++.+||++++.
T Consensus 69 l~~~~~~~~~~~~l~~~i~~~~pDvVi~~ 97 (348)
T TIGR01133 69 IKTPLKLLKAVFQARRILKKFKPDAVIGF 97 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEEc
Confidence 00011134466888899999876
No 76
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=83.22 E-value=6.5 Score=34.91 Aligned_cols=67 Identities=18% Similarity=0.188 Sum_probs=45.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHH
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHK 80 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~ 80 (258)
+||+++|.+..|..+.+.|...+...+.|+.+. +.-..++|.+.|..+...+ ++.+
T Consensus 179 ~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~-----------~~ra~~la~~~g~~~~~~~-------------~~~~ 234 (311)
T cd05213 179 KKVLVIGAGEMGELAAKHLAAKGVAEITIANRT-----------YERAEELAKELGGNAVPLD-------------ELLE 234 (311)
T ss_pred CEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCC-----------HHHHHHHHHHcCCeEEeHH-------------HHHH
Confidence 689999999999999999988765555555431 1124678888886433221 3334
Q ss_pred HHhcCCCcEEEEE
Q psy5230 81 LLNKIEFDIMIVM 93 (258)
Q Consensus 81 ~l~~~~~Dl~vv~ 93 (258)
.+. .+|++|++
T Consensus 235 ~l~--~aDvVi~a 245 (311)
T cd05213 235 LLN--EADVVISA 245 (311)
T ss_pred HHh--cCCEEEEC
Confidence 443 47998877
No 77
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=82.99 E-value=4.7 Score=37.58 Aligned_cols=76 Identities=14% Similarity=0.093 Sum_probs=49.0
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCC--cEEccCCCCCCcccccchHHHH
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSI--KIIQPISLKLNGKYHKIANETH 79 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gI--pv~~~~~~~~~~~~~~~~~~~~ 79 (258)
|++++|.++.+....+.|.+.|.+++.|++.-..+. ....++++..+.+. .++...+. . ++.
T Consensus 302 rv~v~g~~~~~~~l~~~L~elG~~~~~v~~~~~~~~------~~~~l~~~~~~~~~~~~v~~~~d~--~--------e~~ 365 (429)
T cd03466 302 KAAIYGEPDFVVAITRFVLENGMVPVLIATGSESKK------LKEKLEEDLKEYVEKCVILDGADF--F--------DIE 365 (429)
T ss_pred EEEEEcCHHHHHHHHHHHHHCCCEEEEEEeCCCChH------HHHHHHHHHHhcCCceEEEeCCCH--H--------HHH
Confidence 788899999999999999999999988887422111 11123333333333 22222111 2 778
Q ss_pred HHHhcCCCcEEEEE
Q psy5230 80 KLLNKIEFDIMIVM 93 (258)
Q Consensus 80 ~~l~~~~~Dl~vv~ 93 (258)
++++..+||+++.-
T Consensus 366 ~~l~~~~~dliiG~ 379 (429)
T cd03466 366 SYAKELKIDVLIGN 379 (429)
T ss_pred HHHHhcCCCEEEEC
Confidence 88999999999865
No 78
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=82.65 E-value=7.3 Score=33.93 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=22.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCC
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEH 24 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~ 24 (258)
|||.|+|.+.+|......|++.++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~ 26 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNI 26 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCC
Confidence 799999999999999999999874
No 79
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=82.64 E-value=4.8 Score=37.44 Aligned_cols=76 Identities=16% Similarity=0.080 Sum_probs=48.6
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCc--EEccCCCCCCcccccchHHHH
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIK--IIQPISLKLNGKYHKIANETH 79 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIp--v~~~~~~~~~~~~~~~~~~~~ 79 (258)
|++++|.++.+....+.|.+.|.+++.|++.-+.+. ....+..+....+++ ++...+. . ++.
T Consensus 301 ~v~i~~~~~~~~~l~~~L~e~G~~v~~v~~~~~~~~------~~~~~~~~~~~~~~~~~~v~~~d~--~--------el~ 364 (428)
T cd01965 301 RVAIAGDPDLLLGLSRFLLEMGAEPVAAVTGTDNPP------FEKRMELLASLEGIPAEVVFVGDL--W--------DLE 364 (428)
T ss_pred EEEEEcChHHHHHHHHHHHHcCCcceEEEEcCCCch------hHHHHHHhhhhcCCCceEEECCCH--H--------HHH
Confidence 788999999999999999999999998888532211 011122222223332 1111111 1 777
Q ss_pred HHHhcCCCcEEEEE
Q psy5230 80 KLLNKIEFDIMIVM 93 (258)
Q Consensus 80 ~~l~~~~~Dl~vv~ 93 (258)
+.+++.+||+++.-
T Consensus 365 ~~i~~~~pdliig~ 378 (428)
T cd01965 365 SLAKEEPVDLLIGN 378 (428)
T ss_pred HHhhccCCCEEEEC
Confidence 88999999999864
No 80
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=82.62 E-value=2.2 Score=39.79 Aligned_cols=63 Identities=22% Similarity=0.188 Sum_probs=44.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCC----C--c----------cCCcHHHHHHHHCCCcEEccC
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRG----M--K----------LNFSPVKKYALKHSIKIIQPI 63 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~----~--~----------~~~~~v~~~A~~~gIpv~~~~ 63 (258)
.||+++|++..++++++++.+.|++++.+.+.++.+..-- . . .....+.++|+++++..+-|.
T Consensus 3 ~~ililg~g~~~~~~~~~a~~lG~~~v~~~~~~~~~a~~~~~ad~~~~~~~~~~~~~~~d~~~l~~~~~~~~id~I~p~ 81 (450)
T PRK06111 3 QKVLIANRGEIAVRIIRTCQKLGIRTVAIYSEADRDALHVKMADEAYLIGGPRVQESYLNLEKIIEIAKKTGAEAIHPG 81 (450)
T ss_pred ceEEEECCcHHHHHHHHHHHHcCCeEEEEechhhccCcchhhCCEEEEcCCCCccccccCHHHHHHHHHHhCCCEEEeC
Confidence 4899999999999999999999999988876554322100 0 0 011247788999998766553
No 81
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=82.21 E-value=14 Score=30.50 Aligned_cols=86 Identities=19% Similarity=0.160 Sum_probs=45.4
Q ss_pred cCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCC--CccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHHHhc
Q psy5230 7 GTSISAAAILDTLYNSEHNIVLILTKPDLHSGRG--MKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKLLNK 84 (258)
Q Consensus 7 Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~--~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (258)
|--+.+. ++..+.+.|++++++++..+...++. .......++..|+..|||.+..+--.+..+| ..++.+.|++
T Consensus 8 GGkDS~~-al~~a~~~G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~~~~~e~~---~~~l~~~l~~ 83 (194)
T cd01994 8 GGKDSCY-ALYRALEEGHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEISGEEEDE---VEDLKELLRK 83 (194)
T ss_pred CCHHHHH-HHHHHHHcCCEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeCCCCchHH---HHHHHHHHHH
Confidence 3334444 55556667899988887643322221 1112245788999999998653310111111 1244444544
Q ss_pred C---CCcEEEEEeeC
Q psy5230 85 I---EFDIMIVMGIL 96 (258)
Q Consensus 85 ~---~~Dl~vv~~I~ 96 (258)
. .++.++.-.|.
T Consensus 84 ~~~~g~~~vv~G~i~ 98 (194)
T cd01994 84 LKEEGVDAVVFGAIL 98 (194)
T ss_pred HHHcCCCEEEECccc
Confidence 3 37766554554
No 82
>KOG0780|consensus
Probab=82.07 E-value=21 Score=33.05 Aligned_cols=66 Identities=23% Similarity=0.260 Sum_probs=40.1
Q ss_pred HHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHHHhcCCCcEEEEE
Q psy5230 19 LYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKLLNKIEFDIMIVM 93 (258)
Q Consensus 19 L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dl~vv~ 93 (258)
+.+.|+.+..|....-+ .| -...+++.|.+.+||+|-.-.-.++ -.++.+-++..++.++|+++|=
T Consensus 125 ~kkkG~K~~LvcaDTFR-ag-----AfDQLkqnA~k~~iP~ygsyte~dp---v~ia~egv~~fKke~fdvIIvD 190 (483)
T KOG0780|consen 125 YKKKGYKVALVCADTFR-AG-----AFDQLKQNATKARVPFYGSYTEADP---VKIASEGVDRFKKENFDVIIVD 190 (483)
T ss_pred HHhcCCceeEEeecccc-cc-----hHHHHHHHhHhhCCeeEecccccch---HHHHHHHHHHHHhcCCcEEEEe
Confidence 33457777555442211 11 2346899999999999863111111 1344466677888889988876
No 83
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=81.88 E-value=4 Score=34.49 Aligned_cols=91 Identities=18% Similarity=0.189 Sum_probs=47.0
Q ss_pred CeEEEE--cCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCC--CCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchH
Q psy5230 1 MKIIFA--GTSISAAAILDTLYNSEHNIVLILTKPDLHSGR--GMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIAN 76 (258)
Q Consensus 1 mrI~f~--Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr--~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~ 76 (258)
||++.+ |--+....+..++.+ ++|..++|--+....+ -......-++..|+..|||.+....-.+.. ....
T Consensus 1 Mk~v~l~SGGKDS~lAl~~a~~~--~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~g~~~---~~~~ 75 (218)
T PF01902_consen 1 MKVVALWSGGKDSCLALYRALRQ--HEVVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIPTSGDEE---DYVE 75 (218)
T ss_dssp -EEEEE--SSHHHHHHHHHHHHT---EEEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEEE---CC---CHHH
T ss_pred CcEEEEEcCcHHHHHHHHHHHHh--CCccEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEEccCccc---hhhH
Confidence 777654 444566665555544 9998888742222221 112234468999999999987533211111 1223
Q ss_pred HHHHHHhcCCCcEEEEEeeC
Q psy5230 77 ETHKLLNKIEFDIMIVMGIL 96 (258)
Q Consensus 77 ~~~~~l~~~~~Dl~vv~~I~ 96 (258)
++.+.++++.++.++.-.|.
T Consensus 76 ~l~~~l~~~~v~~vv~GdI~ 95 (218)
T PF01902_consen 76 DLKEALKELKVEAVVFGDID 95 (218)
T ss_dssp HHHHHHCTC--SEEE--TTS
T ss_pred HHHHHHHHcCCCEEEECcCC
Confidence 77788899998888776664
No 84
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=81.76 E-value=6.4 Score=34.80 Aligned_cols=51 Identities=6% Similarity=0.068 Sum_probs=36.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEcc
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQP 62 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~ 62 (258)
|||.|+|.+.+|...-..|.++||++. ++.+... ..+.+.+.+..+=++..
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~-~~~r~~~----------~~~~~~~~~advvi~~v 55 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVR-VWSRRSG----------LSLAAVLADADVIVSAV 55 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEE-EEeCCCC----------CCHHHHHhcCCEEEEEC
Confidence 899999999999999999999999884 4443211 23456666666655543
No 85
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=81.56 E-value=6.9 Score=35.32 Aligned_cols=81 Identities=21% Similarity=0.176 Sum_probs=51.2
Q ss_pred CeEEE-EcCC---HHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCC--ccc---
Q psy5230 1 MKIIF-AGTS---ISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLN--GKY--- 71 (258)
Q Consensus 1 mrI~f-~Gs~---~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~--~~~--- 71 (258)
|||.| ++++ .|-.++.+.|-+.||++. |.++ ++ ..+.+++..+|+++....+-... ++.
T Consensus 1 MkIwiDi~~p~hvhfFk~~I~eL~~~GheV~-it~R-~~----------~~~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~ 68 (335)
T PF04007_consen 1 MKIWIDITHPAHVHFFKNIIRELEKRGHEVL-ITAR-DK----------DETEELLDLYGIDYIVIGKHGDSLYGKLLES 68 (335)
T ss_pred CeEEEECCCchHHHHHHHHHHHHHhCCCEEE-EEEe-cc----------chHHHHHHHcCCCeEEEcCCCCCHHHHHHHH
Confidence 88887 5555 477778888888899984 3332 21 24789999999998754321110 000
Q ss_pred ccchHHHHHHHhcCCCcEEEEE
Q psy5230 72 HKIANETHKLLNKIEFDIMIVM 93 (258)
Q Consensus 72 ~~~~~~~~~~l~~~~~Dl~vv~ 93 (258)
..-...+...+++.+||++|+.
T Consensus 69 ~~R~~~l~~~~~~~~pDv~is~ 90 (335)
T PF04007_consen 69 IERQYKLLKLIKKFKPDVAISF 90 (335)
T ss_pred HHHHHHHHHHHHhhCCCEEEec
Confidence 0011145567788899999977
No 86
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=81.26 E-value=28 Score=28.83 Aligned_cols=30 Identities=20% Similarity=0.292 Sum_probs=25.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEc
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILT 31 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt 31 (258)
.||+++|.++.|....+.|++.|++|. |++
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~-VIs 40 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIV-VIS 40 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEE-EEc
Confidence 379999999999999999999987774 554
No 87
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=81.22 E-value=1.1 Score=34.51 Aligned_cols=32 Identities=22% Similarity=0.355 Sum_probs=28.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcC
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTK 32 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~ 32 (258)
|||.|+|.+..+...-..|.+.||+|.+|.++
T Consensus 11 l~I~iIGaGrVG~~La~aL~~ag~~v~~v~sr 42 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARAGHEVVGVYSR 42 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHTTSEEEEESSC
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 79999999999999999999999999998875
No 88
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=81.20 E-value=6.5 Score=34.63 Aligned_cols=27 Identities=19% Similarity=0.318 Sum_probs=25.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEE
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIV 27 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~ 27 (258)
|||.|+|.+.++.+....|.+.|+++.
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~ 27 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVV 27 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEE
Confidence 899999999999999999999998863
No 89
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=80.85 E-value=2.3 Score=34.91 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=25.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcC
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTK 32 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~ 32 (258)
|||.++|.+-.|.+.--.|.+.||++++|=..
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~ 32 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDID 32 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCC
Confidence 99999999999999999999999999988553
No 90
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=80.77 E-value=3.3 Score=39.13 Aligned_cols=61 Identities=21% Similarity=0.236 Sum_probs=47.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCC---c------------cCCcHHHHHHHHCCCcEEcc
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGM---K------------LNFSPVKKYALKHSIKIIQP 62 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~---~------------~~~~~v~~~A~~~gIpv~~~ 62 (258)
||+++|.++.++++.++..+.|+++++|.+.||...---+ + +....+.++|+++++..+.|
T Consensus 4 kiLi~~~ge~a~~~i~aa~~lG~~~v~v~~~~d~~~~~~~~AD~~~~i~~~~~~~y~d~~~i~~~a~~~~iDaI~p 79 (478)
T PRK08463 4 KILIANRGEIAVRVIRACRDLHIKSVAIYTEPDRECLHVKIADEAYRIGTDPIKGYLDVKRIVEIAKACGADAIHP 79 (478)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEECCCccCCcchhhcCEEEEcCCCchhcccCHHHHHHHHHHhCCCEEEE
Confidence 8999999999999999999999999999998776432100 0 11225788999999876655
No 91
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=79.67 E-value=6.8 Score=38.23 Aligned_cols=50 Identities=14% Similarity=0.065 Sum_probs=37.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccC
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPI 63 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~ 63 (258)
++|+++|.+.++..+.+.|.+++++++.+=..|+ ..+.+++.|.+++.-+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~-------------~v~~~~~~g~~v~~GD 450 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDIS-------------AVNLMRKYGYKVYYGD 450 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHH-------------HHHHHHhCCCeEEEee
Confidence 3689999999999999999998888865543332 2344567788887643
No 92
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=79.56 E-value=4.5 Score=37.44 Aligned_cols=74 Identities=12% Similarity=0.115 Sum_probs=47.6
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHH
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKL 81 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~ 81 (258)
|++++|.++.+...-+.|.+.|.+++.+.|.-.... ......+... .+..++.-.++ . ++.++
T Consensus 276 rv~i~gd~~~~~~l~~~L~elGm~~v~~~t~~~~~~------~~~~~~~~l~-~~~~v~~~~d~--~--------~l~~~ 338 (407)
T TIGR01279 276 KIFFFGDNLLELPLARFLKRCGMEVVECGTPYIHRR------FHAAELALLE-GGVRIVEQPDF--H--------RQLQR 338 (407)
T ss_pred EEEEECCchHHHHHHHHHHHCCCEEEEecCCCCChH------HHHHHHhhcC-CCCeEEeCCCH--H--------HHHHH
Confidence 789999999999999999999999998888521100 0001111111 13444332221 1 66788
Q ss_pred HhcCCCcEEEE
Q psy5230 82 LNKIEFDIMIV 92 (258)
Q Consensus 82 l~~~~~Dl~vv 92 (258)
+++.+||++|.
T Consensus 339 i~~~~pDllig 349 (407)
T TIGR01279 339 IRATRPDLVVT 349 (407)
T ss_pred HHhcCCCEEec
Confidence 89999999987
No 93
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=79.23 E-value=2.9 Score=33.25 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=23.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEE
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIV 27 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~ 27 (258)
|||.|+|.+.++.+..+.|.++|+++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~ 28 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVT 28 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEE
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEE
Confidence 799999999999999999999999874
No 94
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=79.14 E-value=7.3 Score=35.27 Aligned_cols=61 Identities=7% Similarity=0.068 Sum_probs=40.6
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCC-------ccCCcHHHHHHHHCCCcEEcc
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGM-------KLNFSPVKKYALKHSIKIIQP 62 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~-------~~~~~~v~~~A~~~gIpv~~~ 62 (258)
||+++|++..+....+++.+.|++++.+-..|+.+..+-- ...+..+.++|+++++.++.+
T Consensus 1 kililG~g~~~~~l~~aa~~~G~~v~~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~v~~ 68 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVINMLDGDALRAVIEREKPDYIVP 68 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhhhCceEEEcCCCCHHHHHHHHHHhCCCEEEe
Confidence 7999999999999999999999998777665554332100 001123556666666665544
No 95
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=79.04 E-value=10 Score=32.86 Aligned_cols=32 Identities=22% Similarity=0.371 Sum_probs=27.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHhC-CCcEEEEEcC
Q psy5230 1 MKIIFAGTSISAAAILDTLYNS-EHNIVLILTK 32 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~-~~~i~~Vvt~ 32 (258)
|||+++|.+.+|...++.|.+. +.++++|+.+
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~ 34 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVP 34 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEc
Confidence 7999999999999999999876 4788888743
No 96
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=79.04 E-value=25 Score=30.28 Aligned_cols=42 Identities=21% Similarity=0.301 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEc
Q psy5230 11 SAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQ 61 (258)
Q Consensus 11 fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~ 61 (258)
.|...++...+++-.|+.|=|. .. -..+|+++|+.-|-+++.
T Consensus 52 ~A~~~v~~~~~~~g~ILfVgTK---~~------a~~~V~~~A~r~g~~yV~ 93 (252)
T COG0052 52 EAYKFLRRIAANGGKILFVGTK---KQ------AQEPVKEFAERTGAYYVN 93 (252)
T ss_pred HHHHHHHHHHcCCCEEEEEech---HH------HHHHHHHHHHHhCCceec
Confidence 3445555565556667666663 22 224788888888887754
No 97
>PLN02256 arogenate dehydrogenase
Probab=78.63 E-value=10 Score=33.72 Aligned_cols=45 Identities=13% Similarity=0.196 Sum_probs=33.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcE
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKI 59 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv 59 (258)
|+|+|+|.+.+|......|.+.|+++.+ +... +..+.|.+.|+..
T Consensus 37 ~kI~IIG~G~mG~slA~~L~~~G~~V~~-~d~~-------------~~~~~a~~~gv~~ 81 (304)
T PLN02256 37 LKIGIVGFGNFGQFLAKTFVKQGHTVLA-TSRS-------------DYSDIAAELGVSF 81 (304)
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCEEEE-EECc-------------cHHHHHHHcCCee
Confidence 7999999999999999999888877764 3321 1246677788754
No 98
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=78.63 E-value=5.7 Score=36.58 Aligned_cols=71 Identities=15% Similarity=0.237 Sum_probs=46.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCC-CcEEEEEcCCCCCCCCCCccCCcHHHHHHHHC--CCcEEccCCCCCCcccccchHH
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSE-HNIVLILTKPDLHSGRGMKLNFSPVKKYALKH--SIKIIQPISLKLNGKYHKIANE 77 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~-~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~--gIpv~~~~~~~~~~~~~~~~~~ 77 (258)
|||+++|.+..|..+...|.+++ .+| .|.++.. .-..+.+..- ++...+.+-.+.+ .
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V-~iAdRs~-----------~~~~~i~~~~~~~v~~~~vD~~d~~--------a 61 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEV-TIADRSK-----------EKCARIAELIGGKVEALQVDAADVD--------A 61 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceE-EEEeCCH-----------HHHHHHHhhccccceeEEecccChH--------H
Confidence 79999999999999999999987 566 3444310 1123332222 4555555433333 6
Q ss_pred HHHHHhcCCCcEEEEE
Q psy5230 78 THKLLNKIEFDIMIVM 93 (258)
Q Consensus 78 ~~~~l~~~~~Dl~vv~ 93 (258)
+.+.|++. |+.|.+
T Consensus 62 l~~li~~~--d~VIn~ 75 (389)
T COG1748 62 LVALIKDF--DLVINA 75 (389)
T ss_pred HHHHHhcC--CEEEEe
Confidence 67778765 888877
No 99
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=78.31 E-value=7.9 Score=32.30 Aligned_cols=32 Identities=16% Similarity=0.163 Sum_probs=25.6
Q ss_pred CeEEEEcCCHHHHHHHHHHH--hCCCcEEEEEcC
Q psy5230 1 MKIIFAGTSISAAAILDTLY--NSEHNIVLILTK 32 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~--~~~~~i~~Vvt~ 32 (258)
.||+++|.+..|....+.+. ..++++++++..
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~ 118 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDV 118 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcccCCcEEEEEEEC
Confidence 48999999999998887643 336899999875
No 100
>PRK08655 prephenate dehydrogenase; Provisional
Probab=78.28 E-value=9.6 Score=35.65 Aligned_cols=46 Identities=20% Similarity=0.170 Sum_probs=33.5
Q ss_pred CeEEEEc-CCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCc
Q psy5230 1 MKIIFAG-TSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIK 58 (258)
Q Consensus 1 mrI~f~G-s~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIp 58 (258)
|||+|+| ++.+|......|.+.|+++..+ .+ + +....+.|.+.|+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~-~r-~----------~~~~~~~a~~~gv~ 47 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVT-GR-D----------PKKGKEVAKELGVE 47 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEE-EC-C----------hHHHHHHHHHcCCe
Confidence 8999997 8999999999999988876433 32 1 11235677777764
No 101
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=77.96 E-value=33 Score=30.36 Aligned_cols=31 Identities=13% Similarity=0.244 Sum_probs=25.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCC-cEEEEEc
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEH-NIVLILT 31 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~-~i~~Vvt 31 (258)
|||.++|.+..+..+...|...+. +.+.++-
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D 32 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVD 32 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEE
Confidence 899999999999999999988873 4444554
No 102
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=77.53 E-value=9.7 Score=29.72 Aligned_cols=73 Identities=26% Similarity=0.307 Sum_probs=38.1
Q ss_pred CeEEEEcCCH-----HHHHHHHHHHhCCCcEEEEEcCCCC-CCCCCCccCCcHHHHHHHHCCCcEE--ccCCCCCCcccc
Q psy5230 1 MKIIFAGTSI-----SAAAILDTLYNSEHNIVLILTKPDL-HSGRGMKLNFSPVKKYALKHSIKII--QPISLKLNGKYH 72 (258)
Q Consensus 1 mrI~f~Gs~~-----fa~~~L~~L~~~~~~i~~Vvt~pd~-~~gr~~~~~~~~v~~~A~~~gIpv~--~~~~~~~~~~~~ 72 (258)
|||+|+.++. +|-.+++.+...++++ -+.--. . -|....+. ..+.+.++||+.- .+..+...
T Consensus 3 ~kVLFVC~gN~cRSpmAE~l~~~~~~~~~~v---~SAGt~~~--~g~~~~~~-a~~vl~e~Gid~~~~~~k~i~~~---- 72 (139)
T COG0394 3 MKVLFVCTGNICRSPMAEALLRHLAPDNVEV---DSAGTGGH--PGEPPDPR-AVEVLAEHGIDISGHRSKQLTEE---- 72 (139)
T ss_pred ceEEEEcCCCcccCHHHHHHHHHhccCCeEE---ECCccCCC--CCCCCCHH-HHHHHHHcCCCcCCccCccCchh----
Confidence 6999998875 4455555554433333 221100 0 11122222 4555669999874 33333321
Q ss_pred cchHHHHHHHhcCCCcEEEEE
Q psy5230 73 KIANETHKLLNKIEFDIMIVM 93 (258)
Q Consensus 73 ~~~~~~~~~l~~~~~Dl~vv~ 93 (258)
++ ..+|++|++
T Consensus 73 ----~~------~~~DlIitm 83 (139)
T COG0394 73 ----DF------DEFDLIITM 83 (139)
T ss_pred ----hh------hhCCEEEEe
Confidence 11 368999988
No 103
>PLN00016 RNA-binding protein; Provisional
Probab=77.43 E-value=8.6 Score=34.88 Aligned_cols=32 Identities=16% Similarity=0.312 Sum_probs=26.6
Q ss_pred CeEEEE----c-CCHHHHHHHHHHHhCCCcEEEEEcC
Q psy5230 1 MKIIFA----G-TSISAAAILDTLYNSEHNIVLILTK 32 (258)
Q Consensus 1 mrI~f~----G-s~~fa~~~L~~L~~~~~~i~~Vvt~ 32 (258)
|||+++ | |+-.|..+.+.|+++||+|.++.-.
T Consensus 53 ~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 53 KKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred ceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecC
Confidence 589999 5 6778999999999999998776643
No 104
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=77.22 E-value=3.8 Score=34.30 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=25.3
Q ss_pred CeEEEEc-CCHHHHHHHHHHHhCCCcEEE
Q psy5230 1 MKIIFAG-TSISAAAILDTLYNSEHNIVL 28 (258)
Q Consensus 1 mrI~f~G-s~~fa~~~L~~L~~~~~~i~~ 28 (258)
|||.|+| ++.++......|.++|+++..
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v 29 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIII 29 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEE
Confidence 9999997 899999999999999988753
No 105
>PRK10126 tyrosine phosphatase; Provisional
Probab=77.19 E-value=7.1 Score=30.60 Aligned_cols=72 Identities=13% Similarity=0.139 Sum_probs=38.3
Q ss_pred CeEEEEcCCHHHH-HHHHHHHhC---CCcE--EEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEE--ccCCCCCCcccc
Q psy5230 1 MKIIFAGTSISAA-AILDTLYNS---EHNI--VLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII--QPISLKLNGKYH 72 (258)
Q Consensus 1 mrI~f~Gs~~fa~-~~L~~L~~~---~~~i--~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~--~~~~~~~~~~~~ 72 (258)
|||+|+.+.+... +.-++|.+. ++++ .|+...+ | .. ......+.++++||+.- .+..+..
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~~~~~v~SAG~~~~~----g--~~-~~~~a~~~l~~~Gid~~~h~sr~lt~----- 70 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYHPELKVESAGLGALV----G--KG-ADPTAISVAAEHQLSLEGHCARQISR----- 70 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcCCeEEEeeeccCCC----C--CC-CCHHHHHHHHHcCCCcCCCccccCCH-----
Confidence 7999999886544 333444442 2332 2332211 1 11 22346677888999862 2323321
Q ss_pred cchHHHHHHHhcCCCcEEEEE
Q psy5230 73 KIANETHKLLNKIEFDIMIVM 93 (258)
Q Consensus 73 ~~~~~~~~~l~~~~~Dl~vv~ 93 (258)
+ .+ ..+|++|++
T Consensus 71 ----~---~~--~~~DlIl~M 82 (147)
T PRK10126 71 ----R---LC--RNYDLILTM 82 (147)
T ss_pred ----H---Hh--ccCCEEEEC
Confidence 2 11 268999987
No 106
>PRK04148 hypothetical protein; Provisional
Probab=77.15 E-value=12 Score=29.13 Aligned_cols=52 Identities=15% Similarity=0.114 Sum_probs=38.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCC
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLK 66 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~ 66 (258)
+||+-+|.+ |+..+-..|.+.|++++++=..|. ..+.|+++++.+..-+-++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~-------------aV~~a~~~~~~~v~dDlf~ 69 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK-------------AVEKAKKLGLNAFVDDLFN 69 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH-------------HHHHHHHhCCeEEECcCCC
Confidence 589999999 888788888888999988744332 3567788888887654443
No 107
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=77.02 E-value=16 Score=34.02 Aligned_cols=34 Identities=21% Similarity=0.173 Sum_probs=30.4
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCC
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDL 35 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~ 35 (258)
||+++|.++.++++.+++.+.|++++.+.+.+|.
T Consensus 4 ~iLi~g~g~~a~~i~~aa~~~G~~vv~~~~~~d~ 37 (451)
T PRK08591 4 KILIANRGEIALRIIRACKELGIKTVAVHSTADR 37 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEcChhhc
Confidence 8999999999999999999999999888776553
No 108
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=77.01 E-value=9.5 Score=36.76 Aligned_cols=70 Identities=11% Similarity=0.070 Sum_probs=48.7
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHH
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKL 81 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~ 81 (258)
+|+++|.+.++..+.+.|.++|++++.|=..+ ...+.+++.|.+++.-+-. ++ +.++.
T Consensus 419 hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~-------------~~~~~~~~~g~~~i~GD~~-~~--------~~L~~ 476 (558)
T PRK10669 419 HALLVGYGRVGSLLGEKLLAAGIPLVVIETSR-------------TRVDELRERGIRAVLGNAA-NE--------EIMQL 476 (558)
T ss_pred CEEEECCChHHHHHHHHHHHCCCCEEEEECCH-------------HHHHHHHHCCCeEEEcCCC-CH--------HHHHh
Confidence 47899999999999999999999885543221 1234456789998875433 33 66666
Q ss_pred HhcCCCcEEEEE
Q psy5230 82 LNKIEFDIMIVM 93 (258)
Q Consensus 82 l~~~~~Dl~vv~ 93 (258)
..-.++|.+++.
T Consensus 477 a~i~~a~~viv~ 488 (558)
T PRK10669 477 AHLDCARWLLLT 488 (558)
T ss_pred cCccccCEEEEE
Confidence 655678866543
No 109
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=76.93 E-value=8.8 Score=36.56 Aligned_cols=61 Identities=20% Similarity=0.202 Sum_probs=44.6
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCC------------CCC----ccCCcHHHHHHHHCCCcEEcc
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSG------------RGM----KLNFSPVKKYALKHSIKIIQP 62 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~g------------r~~----~~~~~~v~~~A~~~gIpv~~~ 62 (258)
||+++|.++.++++++++.+.|++.++|.+.+|...- .+. -+....+.++|++.++..+.|
T Consensus 4 kvLIan~Geia~~iiraar~lGi~~V~v~s~~d~~a~~~~~AD~~~~i~~~~~~~syld~~~i~~~a~~~~~daI~p 80 (499)
T PRK08654 4 KILIANRGEIAIRVMRACRELGIKTVAVYSEADKNALFVKYADEAYPIGPAPPSKSYLNIERIIDVAKKAGADAIHP 80 (499)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEeccccccccchhhCCEEEEcCCCCcccCccCHHHHHHHHHHhCCCEEEE
Confidence 8999999999999999999999999999887764321 000 011124677888888766555
No 110
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=76.91 E-value=14 Score=34.44 Aligned_cols=76 Identities=14% Similarity=0.110 Sum_probs=49.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHH
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKL 81 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~ 81 (258)
|+.++|.++........|.+.|.+++.+.|.-+.... .....+.....+-.+..-..+ .+..++
T Consensus 287 kv~v~g~~~~~~~l~~~l~elGmevv~~~t~~~~~~~------~~~~~~~~~~~~~~v~~~~dl----------~~~~~~ 350 (422)
T TIGR02015 287 RVTVSGYEGSELLVVRLLLESGADVPYVGTAIPRTAW------GAEDKRWLEMLGVEVKYRASL----------EDDMEA 350 (422)
T ss_pred eEEEEcCCccHHHHHHHHHHCCCEEEEEecCCCCccc------cHHHHHHHHhcCCCceeccCH----------HHHHHH
Confidence 6889999999999999999999999999987432111 112333333333222111111 145678
Q ss_pred HhcCCCcEEEEE
Q psy5230 82 LNKIEFDIMIVM 93 (258)
Q Consensus 82 l~~~~~Dl~vv~ 93 (258)
+++.+||++|.-
T Consensus 351 l~~~~pDllig~ 362 (422)
T TIGR02015 351 VLEFEPDLAIGT 362 (422)
T ss_pred HhhCCCCEEEcC
Confidence 899999999865
No 111
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=76.87 E-value=9.1 Score=35.78 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=26.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEc
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILT 31 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt 31 (258)
|||+++|++.-..++..+|.++++++..+..
T Consensus 3 ~kVLvlG~G~re~al~~~l~~~g~~v~~~~~ 33 (435)
T PRK06395 3 MKVMLVGSGGREDAIARAIKRSGAILFSVIG 33 (435)
T ss_pred eEEEEECCcHHHHHHHHHHHhCCCeEEEEEC
Confidence 8999999998888888899888877766655
No 112
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=76.85 E-value=11 Score=33.71 Aligned_cols=30 Identities=7% Similarity=0.199 Sum_probs=25.2
Q ss_pred CeEEEEcC-CHHHHHHHHHHHhC-CCcEEEEE
Q psy5230 1 MKIIFAGT-SISAAAILDTLYNS-EHNIVLIL 30 (258)
Q Consensus 1 mrI~f~Gs-~~fa~~~L~~L~~~-~~~i~~Vv 30 (258)
|||+++|. +-.|..+.+.|++. +++|.++.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~ 33 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMD 33 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEe
Confidence 69999995 78899999999986 58887764
No 113
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=76.57 E-value=30 Score=30.77 Aligned_cols=79 Identities=14% Similarity=0.242 Sum_probs=44.1
Q ss_pred CeEEEEcC-CHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHH
Q psy5230 1 MKIIFAGT-SISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETH 79 (258)
Q Consensus 1 mrI~f~Gs-~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~ 79 (258)
+||++.|. +-.|..+.+.|++.|++++.++.... ..+. ...+...+....+.++.. ++.+.. .+.
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~-Dl~d~~-------~~~ 67 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLT-YAGN-----LMSLAPVAQSERFAFEKV-DICDRA-------ELA 67 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCc-cccc-----hhhhhhcccCCceEEEEC-CCcChH-------HHH
Confidence 48888885 56899999999999888655543211 1110 001111111123444433 344431 455
Q ss_pred HHHhcCCCcEEEEE
Q psy5230 80 KLLNKIEFDIMIVM 93 (258)
Q Consensus 80 ~~l~~~~~Dl~vv~ 93 (258)
+.++...+|.+|-.
T Consensus 68 ~~~~~~~~D~Vih~ 81 (355)
T PRK10217 68 RVFTEHQPDCVMHL 81 (355)
T ss_pred HHHhhcCCCEEEEC
Confidence 56666679988866
No 114
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=76.35 E-value=7.6 Score=35.73 Aligned_cols=75 Identities=12% Similarity=0.102 Sum_probs=47.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCC-CCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHH
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKP-DLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETH 79 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~p-d~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~ 79 (258)
.|++++|.+..+...-+.|.+.|.+++.+.|+- ++. ......+... .++.+..-.+. . ++.
T Consensus 277 krv~i~g~~~~~~~la~~L~elGm~vv~~~t~~~~~~-------~~~~~~~~l~-~~~~v~~~~d~--~--------~l~ 338 (396)
T cd01979 277 KSIFFMGDNLLEIPLARFLTRCGMIVVEVGTPYLDKR-------FQAAELELLP-PMVRIVEKPDN--Y--------RQL 338 (396)
T ss_pred CEEEEECCchHHHHHHHHHHHCCCEEEeeCCCcCChH-------HHHHHHHhcC-CCCeEEECCCH--H--------HHH
Confidence 378899999999999999999999998887631 110 0011111111 34444332221 1 667
Q ss_pred HHHhcCCCcEEEEE
Q psy5230 80 KLLNKIEFDIMIVM 93 (258)
Q Consensus 80 ~~l~~~~~Dl~vv~ 93 (258)
+.+++.+||++|.-
T Consensus 339 ~~i~~~~pDlli~~ 352 (396)
T cd01979 339 DRIRELRPDLVVTG 352 (396)
T ss_pred HHHHhcCCCEEEec
Confidence 88899999999864
No 115
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=76.12 E-value=16 Score=35.02 Aligned_cols=75 Identities=9% Similarity=-0.024 Sum_probs=47.6
Q ss_pred eEEEEcCCHHHHHHHHHHH-hCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHH
Q psy5230 2 KIIFAGTSISAAAILDTLY-NSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHK 80 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~-~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~ 80 (258)
|++++|-++.+......|. +.|.++++++|+-.. ........+..+-..+-.++.++- +..+
T Consensus 330 rvai~~gg~~~~~~~~~l~~ElGmevv~~~t~~~~---------~~d~~~~~~~~~~~~~~i~D~~~~--------e~~~ 392 (513)
T TIGR01861 330 KVCLWPGGSKLWHWAHVIEEEMGLKVVSVYSKFGH---------QGDMEKGVARCGEGALAIDDPNEL--------EGLE 392 (513)
T ss_pred EEEEECCchHHHHHHHHHHHhCCCEEEEEeccCCC---------HHHHHHHHHhCCCCcEEecCCCHH--------HHHH
Confidence 7889988888888888888 589999999985210 111222222222212222223322 5667
Q ss_pred HHhcCCCcEEEEE
Q psy5230 81 LLNKIEFDIMIVM 93 (258)
Q Consensus 81 ~l~~~~~Dl~vv~ 93 (258)
.+++.+||++|.-
T Consensus 393 ~l~~~~~Dllig~ 405 (513)
T TIGR01861 393 AMEMLKPDIILTG 405 (513)
T ss_pred HHHhcCCCEEEec
Confidence 8899999999876
No 116
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=76.09 E-value=11 Score=34.87 Aligned_cols=76 Identities=13% Similarity=0.122 Sum_probs=47.8
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHH
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKL 81 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~ 81 (258)
|++++|.+.....+.+.|.+.|.+++.++|.-.... ...+..++....++.+.....+. +..+.
T Consensus 282 kv~v~g~~~~~~~la~~L~elGmevv~~~t~~~~~~------~~~~~~~~l~~~~~~v~~~~~~~----------~~~~~ 345 (416)
T cd01980 282 RVLVSGYEGNELLVARLLIESGAEVPYVSTSIPKTS------LSAPDYEWLSALGVEVRYRKSLE----------DDIAA 345 (416)
T ss_pred eEEEECCCchhHHHHHHHHHcCCEEEEEecCCCChh------hhHHHHHHHHhcCCccccCCCHH----------HHHHH
Confidence 677888888888888999999999999998521110 11233444433454432221111 34566
Q ss_pred HhcCCCcEEEEE
Q psy5230 82 LNKIEFDIMIVM 93 (258)
Q Consensus 82 l~~~~~Dl~vv~ 93 (258)
++..+||++|.-
T Consensus 346 ~~~~~pDl~Ig~ 357 (416)
T cd01980 346 VEEYRPDLAIGT 357 (416)
T ss_pred HhhcCCCEEEeC
Confidence 788999999875
No 117
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=75.70 E-value=14 Score=35.97 Aligned_cols=78 Identities=14% Similarity=0.169 Sum_probs=49.9
Q ss_pred eEEEEcCCHHHHHHHHHHHhCC-CcEEEEEcCCCCCCCCCCccCCcHHHHHHHHC--CCcEEccCCCCCCcccccchHHH
Q psy5230 2 KIIFAGTSISAAAILDTLYNSE-HNIVLILTKPDLHSGRGMKLNFSPVKKYALKH--SIKIIQPISLKLNGKYHKIANET 78 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~-~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~--gIpv~~~~~~~~~~~~~~~~~~~ 78 (258)
||+++|.+.++..++-.|+.+| .++.+|++.-. ++..++ + -.+.+.|.+. ++++-..+...+. ++
T Consensus 131 kVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnR-I--gEl~e~A~~~n~~v~v~~i~~~~~~--------dl 198 (637)
T TIGR03693 131 KILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDR-I--HELAEIAEETDDALLVQEIDFAEDQ--------HL 198 (637)
T ss_pred cEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhhhH-H--HHHHHHHHHhCCCCceEeccCCcch--------hH
Confidence 7999999999999999999999 56778877432 222211 1 1235666663 4444332222222 66
Q ss_pred HHHHhcCCCcEEEEE
Q psy5230 79 HKLLNKIEFDIMIVM 93 (258)
Q Consensus 79 ~~~l~~~~~Dl~vv~ 93 (258)
.+.++ .+|+++.+
T Consensus 199 ~ev~~--~~DiVi~v 211 (637)
T TIGR03693 199 HEAFE--PADWVLYV 211 (637)
T ss_pred HHhhc--CCcEEEEE
Confidence 66664 56988888
No 118
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=75.50 E-value=55 Score=29.07 Aligned_cols=77 Identities=10% Similarity=0.100 Sum_probs=44.2
Q ss_pred CeEEEEcC-CHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHH
Q psy5230 1 MKIIFAGT-SISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETH 79 (258)
Q Consensus 1 mrI~f~Gs-~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~ 79 (258)
|||++.|. +-.|..+.+.|+++|++|+++.-.+. . .............+.++.. ++.+.. ++.
T Consensus 5 k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~--~------~~~~~~~~~~~~~~~~~~~-Dl~~~~-------~~~ 68 (349)
T TIGR02622 5 KKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPP--T------SPNLFELLNLAKKIEDHFG-DIRDAA-------KLR 68 (349)
T ss_pred CEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCc--c------chhHHHHHhhcCCceEEEc-cCCCHH-------HHH
Confidence 68999985 56899999999999999865532111 0 0011111111223443332 344431 555
Q ss_pred HHHhcCCCcEEEEE
Q psy5230 80 KLLNKIEFDIMIVM 93 (258)
Q Consensus 80 ~~l~~~~~Dl~vv~ 93 (258)
+.++..++|++|-.
T Consensus 69 ~~~~~~~~d~vih~ 82 (349)
T TIGR02622 69 KAIAEFKPEIVFHL 82 (349)
T ss_pred HHHhhcCCCEEEEC
Confidence 66777789987755
No 119
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=75.32 E-value=16 Score=33.50 Aligned_cols=31 Identities=13% Similarity=0.281 Sum_probs=25.7
Q ss_pred CeEEEEcC-CHHHHHHHHHHHhCCCcEEEEEc
Q psy5230 1 MKIIFAGT-SISAAAILDTLYNSEHNIVLILT 31 (258)
Q Consensus 1 mrI~f~Gs-~~fa~~~L~~L~~~~~~i~~Vvt 31 (258)
|||+++|. +..|..+.+.|+++|++++++.-
T Consensus 61 ~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R 92 (390)
T PLN02657 61 VTVLVVGATGYIGKFVVRELVRRGYNVVAVAR 92 (390)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEEe
Confidence 68899885 56799999999999999877653
No 120
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=75.21 E-value=6.4 Score=36.65 Aligned_cols=76 Identities=9% Similarity=0.102 Sum_probs=49.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHh-CCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHH
Q psy5230 1 MKIIFAGTSISAAAILDTLYN-SEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETH 79 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~-~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~ 79 (258)
.|++++|.+..+...-+.|.+ .|.+++.+.|.-.. . ......++.+ ..++.++.-.+. . ++.
T Consensus 291 krvai~g~~~~~~~la~~L~eelGm~~v~v~t~~~~-~----~~~~~~~~~l--~~~~~v~~~~D~--~--------~l~ 353 (427)
T PRK02842 291 KRVFFLPDSQLEIPLARFLSRECGMELVEVGTPYLN-R----RFLAAELALL--PDGVRIVEGQDV--E--------RQL 353 (427)
T ss_pred cEEEEECCchhHHHHHHHHHHhCCCEEEEeCCCCCC-H----HHHHHHHHhc--cCCCEEEECCCH--H--------HHH
Confidence 378899999889988899998 89999988884211 0 0001112222 226656432222 1 667
Q ss_pred HHHhcCCCcEEEEE
Q psy5230 80 KLLNKIEFDIMIVM 93 (258)
Q Consensus 80 ~~l~~~~~Dl~vv~ 93 (258)
+.+++.+||++|.-
T Consensus 354 ~~i~~~~pDllig~ 367 (427)
T PRK02842 354 DRIRALRPDLVVCG 367 (427)
T ss_pred HHHHHcCCCEEEcc
Confidence 88899999999865
No 121
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=75.13 E-value=22 Score=31.91 Aligned_cols=34 Identities=6% Similarity=0.216 Sum_probs=29.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhC-CCcEEEEEcCCC
Q psy5230 1 MKIIFAGTSISAAAILDTLYNS-EHNIVLILTKPD 34 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~-~~~i~~Vvt~pd 34 (258)
|||+++|++..|...++.|.++ +.++++|+++.+
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~ 38 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRG 38 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCc
Confidence 6999999999999999999876 589999998743
No 122
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=74.98 E-value=11 Score=32.31 Aligned_cols=31 Identities=29% Similarity=0.302 Sum_probs=24.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCC--cEEEEEc
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEH--NIVLILT 31 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~--~i~~Vvt 31 (258)
|||.|+|.+.+|......|.+++. ..+.++.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~ 35 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSD 35 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEc
Confidence 799999999999999999998873 2334444
No 123
>PRK05884 short chain dehydrogenase; Provisional
Probab=74.89 E-value=13 Score=30.96 Aligned_cols=73 Identities=11% Similarity=0.154 Sum_probs=43.9
Q ss_pred CeEEEEcC-CHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHH
Q psy5230 1 MKIIFAGT-SISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETH 79 (258)
Q Consensus 1 mrI~f~Gs-~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~ 79 (258)
||+++.|. ...+..+.+.|.+.|++++.+.-.+ ..+.+.+.+.++.+++. ++.+.. ++.
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~------------~~~~~~~~~~~~~~~~~-D~~~~~-------~v~ 60 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARR------------DDLEVAAKELDVDAIVC-DNTDPA-------SLE 60 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCH------------HHHHHHHHhccCcEEec-CCCCHH-------HHH
Confidence 89999975 6799999999999998876542211 22455666656655543 343331 222
Q ss_pred HHHhc--CCCcEEEEE
Q psy5230 80 KLLNK--IEFDIMIVM 93 (258)
Q Consensus 80 ~~l~~--~~~Dl~vv~ 93 (258)
+.++. ..+|++|-.
T Consensus 61 ~~~~~~~~~id~lv~~ 76 (223)
T PRK05884 61 EARGLFPHHLDTIVNV 76 (223)
T ss_pred HHHHHHhhcCcEEEEC
Confidence 22222 157887754
No 124
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=74.58 E-value=6.8 Score=34.97 Aligned_cols=36 Identities=6% Similarity=0.075 Sum_probs=30.7
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCC
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHS 37 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~ 37 (258)
||+.+||.+.+.++--++...|.++++|=-.++.|.
T Consensus 14 kvmLLGSGELGKEvaIe~QRLG~eViAVDrY~~APA 49 (394)
T COG0027 14 KVMLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPA 49 (394)
T ss_pred EEEEecCCccchHHHHHHHhcCCEEEEecCcCCChh
Confidence 789999999999999888888999999966655544
No 125
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=74.53 E-value=21 Score=26.79 Aligned_cols=80 Identities=21% Similarity=0.260 Sum_probs=47.3
Q ss_pred eEEEEcCC--HHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccC-CCCCCcccccchHHH
Q psy5230 2 KIIFAGTS--ISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPI-SLKLNGKYHKIANET 78 (258)
Q Consensus 2 rI~f~Gs~--~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~-~~~~~~~~~~~~~~~ 78 (258)
||+++|.. .|.....+.|.++|+++..+....+ ....-...|+.++..+ ..+....+=. ...+
T Consensus 1 KIl~i~~~~~~~~~~~~~~L~~~g~~V~ii~~~~~-------------~~~~~~~~~i~~~~~~~~~k~~~~~~~-~~~l 66 (139)
T PF13477_consen 1 KILLIGNTPSTFIYNLAKELKKRGYDVHIITPRND-------------YEKYEIIEGIKVIRLPSPRKSPLNYIK-YFRL 66 (139)
T ss_pred CEEEEecCcHHHHHHHHHHHHHCCCEEEEEEcCCC-------------chhhhHhCCeEEEEecCCCCccHHHHH-HHHH
Confidence 68888885 3777888888888999854443211 1233346677666543 1111100001 1156
Q ss_pred HHHHhcCCCcEEEEEee
Q psy5230 79 HKLLNKIEFDIMIVMGI 95 (258)
Q Consensus 79 ~~~l~~~~~Dl~vv~~I 95 (258)
...+++.+||++.+...
T Consensus 67 ~k~ik~~~~DvIh~h~~ 83 (139)
T PF13477_consen 67 RKIIKKEKPDVIHCHTP 83 (139)
T ss_pred HHHhccCCCCEEEEecC
Confidence 67788999999977643
No 126
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=74.26 E-value=9.4 Score=35.99 Aligned_cols=61 Identities=16% Similarity=0.251 Sum_probs=40.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCC------ccC---CcHHHHHHHHCCCcEEcc
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGM------KLN---FSPVKKYALKHSIKIIQP 62 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~------~~~---~~~v~~~A~~~gIpv~~~ 62 (258)
.+|+++|++..++.+-..|...||.++ |+=..+++-|+-+ ++. ..-..++-++.|+.++.-
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vt-v~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~ 193 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVT-VFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLN 193 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEE-EeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEc
Confidence 479999999999999999999988774 3555666666521 111 112344556677776543
No 127
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=74.20 E-value=3.8 Score=32.26 Aligned_cols=32 Identities=9% Similarity=0.170 Sum_probs=21.0
Q ss_pred EEEcCCHHHHHHHHHHHhC---CCcEEEEEcCCCC
Q psy5230 4 IFAGTSISAAAILDTLYNS---EHNIVLILTKPDL 35 (258)
Q Consensus 4 ~f~Gs~~fa~~~L~~L~~~---~~~i~~Vvt~pd~ 35 (258)
..+|...-+..+.+.|.+. |+++++++..++.
T Consensus 81 ~~v~~~~~~~~~~~~l~~~~~~g~~vvg~~d~~~~ 115 (175)
T PF13727_consen 81 LIVGAGGAGRELAEALRSNPRLGYRVVGFVDDDPS 115 (175)
T ss_dssp EEE--SHHHHHHHHHHHH--SSSEEEEEEE-S-GG
T ss_pred EEEEEechHHHHHHHHHhhhhcCceEEEEEeCchh
Confidence 4567777888888888774 6789999986543
No 128
>KOG1502|consensus
Probab=74.17 E-value=67 Score=28.93 Aligned_cols=106 Identities=13% Similarity=0.091 Sum_probs=66.7
Q ss_pred CeEEEEcCCH-HHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHH--HHHCCCcEEccCCCCCCcccccchHH
Q psy5230 1 MKIIFAGTSI-SAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKY--ALKHSIKIIQPISLKLNGKYHKIANE 77 (258)
Q Consensus 1 mrI~f~Gs~~-fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~--A~~~gIpv~~~~~~~~~~~~~~~~~~ 77 (258)
|+|.+-|... .|..+++.|+++||.|.+.|=.|..+.+ ...++++ |.++ +.++..+ +.+.+ .
T Consensus 7 ~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~------~~~L~~l~~a~~~-l~l~~aD-L~d~~-------s 71 (327)
T KOG1502|consen 7 KKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKK------TEHLRKLEGAKER-LKLFKAD-LLDEG-------S 71 (327)
T ss_pred cEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhh------HHHHHhcccCccc-ceEEecc-ccccc-------h
Confidence 4677777665 7889999999999999999876654321 0011111 1122 6666654 33332 5
Q ss_pred HHHHHhcCCCcEEEEE--eeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5230 78 THKLLNKIEFDIMIVM--GILPEDTSLTLQNKLEKLSKILIIDTIKKIEY 125 (258)
Q Consensus 78 ~~~~l~~~~~Dl~vv~--~I~~~dt~~~L~~kl~~~g~~ll~~~l~~l~~ 125 (258)
+.+.+. .+|.++-+ |++.+.+- ...+|...+.+-...+|+.+..
T Consensus 72 f~~ai~--gcdgVfH~Asp~~~~~~~--~e~~li~pav~Gt~nVL~ac~~ 117 (327)
T KOG1502|consen 72 FDKAID--GCDGVFHTASPVDFDLED--PEKELIDPAVKGTKNVLEACKK 117 (327)
T ss_pred HHHHHh--CCCEEEEeCccCCCCCCC--cHHhhhhHHHHHHHHHHHHHhc
Confidence 556665 47877755 55544333 4446788888888888888776
No 129
>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional
Probab=73.85 E-value=13 Score=35.14 Aligned_cols=31 Identities=16% Similarity=0.316 Sum_probs=26.8
Q ss_pred eEEEEcCCHHHHHHHHHHHhC---CCcEEEEEcC
Q psy5230 2 KIIFAGTSISAAAILDTLYNS---EHNIVLILTK 32 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~---~~~i~~Vvt~ 32 (258)
+++++|+++.|..+.+.|.++ |+++++++..
T Consensus 148 rvLIIGaG~~a~~l~~~L~~~~~~g~~vVGfIDd 181 (476)
T PRK15204 148 KTIILGSGQNARGAYSALQSEEMMGFDVIAFFDT 181 (476)
T ss_pred eEEEEECCHHHHHHHHHHHhCccCCcEEEEEEcC
Confidence 689999999999999999865 6889999863
No 130
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=73.78 E-value=43 Score=27.80 Aligned_cols=29 Identities=10% Similarity=0.170 Sum_probs=25.3
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEc
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILT 31 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt 31 (258)
||+++|.+..|..-.+.|++.|.+| .|++
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~ga~V-tVvs 39 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKAGAQL-RVIA 39 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCEE-EEEc
Confidence 7999999999999999999998776 4555
No 131
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=73.52 E-value=8.5 Score=34.64 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=25.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEE
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVL 28 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~ 28 (258)
++|+|+|.+..|......|.+.|++++.
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv 45 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSGVDVVV 45 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCCCEEEE
Confidence 5899999999999999999999987754
No 132
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=73.42 E-value=15 Score=28.37 Aligned_cols=75 Identities=23% Similarity=0.233 Sum_probs=38.5
Q ss_pred CeEEEEcCCHH-----HHHHHHHHHhC-CCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcE--EccCCCCCCcccc
Q psy5230 1 MKIIFAGTSIS-----AAAILDTLYNS-EHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKI--IQPISLKLNGKYH 72 (258)
Q Consensus 1 mrI~f~Gs~~f-----a~~~L~~L~~~-~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv--~~~~~~~~~~~~~ 72 (258)
|||+|..+++. |-..++.+... +++ |.+.--.+...|.... .-+.+..+++||+. +.+..+..
T Consensus 1 ~~iLfvc~~N~~RS~mAEai~~~~~~~~~~~---v~SaG~~~~~~g~~~~-~~a~~~l~~~Gid~s~h~s~~l~~----- 71 (141)
T cd00115 1 KKVLFVCTGNICRSPMAEAIFRHLAPKLDIE---VDSAGTSGWHVGGRPD-PRAIAVLAEHGIDISGHRARQLTE----- 71 (141)
T ss_pred CeEEEEecChhhhhHHHHHHHHHHhhhCCEE---EECCCCCCccCCCCCC-HHHHHHHHHcCCCcccCeeeeCCH-----
Confidence 89999998864 44444444432 232 3332111110111222 23456677889986 33333321
Q ss_pred cchHHHHHHHhcCCCcEEEEE
Q psy5230 73 KIANETHKLLNKIEFDIMIVM 93 (258)
Q Consensus 73 ~~~~~~~~~l~~~~~Dl~vv~ 93 (258)
. .+ ..+|++|++
T Consensus 72 ----~---~~--~~aDlIi~m 83 (141)
T cd00115 72 ----D---DF--DEFDLIITM 83 (141)
T ss_pred ----H---HH--HhCCEEEEE
Confidence 1 12 358999988
No 133
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=73.24 E-value=11 Score=35.14 Aligned_cols=62 Identities=18% Similarity=0.137 Sum_probs=43.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCC-CCCCC--c---c-------CC---cHHHHHHHHCCCcEEccC
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLH-SGRGM--K---L-------NF---SPVKKYALKHSIKIIQPI 63 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~-~gr~~--~---~-------~~---~~v~~~A~~~gIpv~~~~ 63 (258)
||+++|.++.++++++++.+.|++++++-+.+|.. .+... + + .+ ..+.++|.++++.++.|.
T Consensus 4 kili~g~g~~~~~~~~aa~~lG~~vv~~~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~pg 81 (449)
T TIGR00514 4 KILIANRGEIALRILRACKELGIKTVAVHSTADRDALHVLLADEAVCIGPAPSAKSYLNIPNIISAAEITGADAIHPG 81 (449)
T ss_pred eEEEeCCCHHHHHHHHHHHHcCCeEEEEEChhhhcccccccCCEEEEcCCCCchhchhCHHHHHHHHHHhCCCEEEeC
Confidence 89999999999999999999999998886654432 11100 0 0 11 137778888888776553
No 134
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=72.96 E-value=13 Score=32.08 Aligned_cols=33 Identities=15% Similarity=0.415 Sum_probs=27.8
Q ss_pred CeEEEEcC-CHHHHHHHHHHHhC-CCcEEEEEcCC
Q psy5230 1 MKIIFAGT-SISAAAILDTLYNS-EHNIVLILTKP 33 (258)
Q Consensus 1 mrI~f~Gs-~~fa~~~L~~L~~~-~~~i~~Vvt~p 33 (258)
|||+++|. +.+|...++.+.+. ++++++++...
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~ 36 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRP 36 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 89999997 99999999888765 58999887643
No 135
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=72.80 E-value=18 Score=33.46 Aligned_cols=73 Identities=14% Similarity=0.134 Sum_probs=45.4
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHC--CCcEEccCCCCCCcccccchHHHH
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKH--SIKIIQPISLKLNGKYHKIANETH 79 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~--gIpv~~~~~~~~~~~~~~~~~~~~ 79 (258)
|++++|.++.+....+.|.+.|.+++.+.+.... +....+..... +..++. ..+.. ++.
T Consensus 289 rv~i~~~~~~~~~la~~l~elGm~v~~~~~~~~~---------~~~~~~~~~~~~~~~~v~~--~~~~~--------e~~ 349 (410)
T cd01968 289 KAALYTGGVKSWSLVSALQDLGMEVVATGTQKGT---------KEDYERIKELLGEGTVIVD--DANPR--------ELK 349 (410)
T ss_pred EEEEEcCCchHHHHHHHHHHCCCEEEEEecccCC---------HHHHHHHHHHhCCCcEEEe--CCCHH--------HHH
Confidence 7888888888888888888889998888764211 11122222222 222221 12112 677
Q ss_pred HHHhcCCCcEEEEE
Q psy5230 80 KLLNKIEFDIMIVM 93 (258)
Q Consensus 80 ~~l~~~~~Dl~vv~ 93 (258)
+.++..+||+++.-
T Consensus 350 ~~i~~~~pDl~ig~ 363 (410)
T cd01968 350 KLLKEKKADLLVAG 363 (410)
T ss_pred HHHhhcCCCEEEEC
Confidence 88889999998764
No 136
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=72.27 E-value=18 Score=33.27 Aligned_cols=60 Identities=18% Similarity=0.188 Sum_probs=37.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCC-CCCC--------ccCCcHHHHHHHHCCCcEEc
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHS-GRGM--------KLNFSPVKKYALKHSIKIIQ 61 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~-gr~~--------~~~~~~v~~~A~~~gIpv~~ 61 (258)
|||+++|++..+....+++.+.++.+. |++.|..+. .+-. ......+.++|+++++..+-
T Consensus 1 ~kiliiG~G~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~id~vi 69 (423)
T TIGR00877 1 MKVLVIGNGGREHALAWKLAQSPLVKY-VYVAPGNAGTARLAKNKNVAISITDIEALVEFAKKKKIDLAV 69 (423)
T ss_pred CEEEEECCChHHHHHHHHHHhCCCccE-EEEECCCHHHhhhcccccccCCCCCHHHHHHHHHHhCCCEEE
Confidence 899999999999999999988775554 444343221 1100 01112367778888875443
No 137
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=72.16 E-value=11 Score=35.44 Aligned_cols=61 Identities=21% Similarity=0.210 Sum_probs=43.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCC-CCCC--c-------------cCCcHHHHHHHHCCCcEEcc
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHS-GRGM--K-------------LNFSPVKKYALKHSIKIIQP 62 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~-gr~~--~-------------~~~~~v~~~A~~~gIpv~~~ 62 (258)
||+++|.++.++++++++.+.|++++++.+.+|... +... + +....+.++|+++++..+.|
T Consensus 7 ~vLi~~~geia~~ii~aa~~lG~~~v~~~s~~d~~~~~~~~aD~~~~i~p~~~~~~y~d~~~i~~~a~~~~~daI~p 83 (467)
T PRK12833 7 KVLVANRGEIAVRIIRAARELGMRTVAACSDADRDSLAARMADEAVHIGPSHAAKSYLNPAAILAAARQCGADAIHP 83 (467)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCeEEEEECCCCCCChhHHhCCEEEecCCCCccccccCHHHHHHHHHHhCCCEEEE
Confidence 899999999999999999999999988887655421 0000 0 01124677888888776655
No 138
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=72.09 E-value=47 Score=26.29 Aligned_cols=30 Identities=10% Similarity=0.129 Sum_probs=26.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEc
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILT 31 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt 31 (258)
.||+++|.+..|..-.+.|++.|+++. ||+
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~-VIs 43 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVT-VVS 43 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEE-EEc
Confidence 379999999999999999999998886 554
No 139
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=71.96 E-value=11 Score=35.73 Aligned_cols=31 Identities=19% Similarity=0.357 Sum_probs=25.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHhC--CCcEEEEEc
Q psy5230 1 MKIIFAGTSISAAAILDTLYNS--EHNIVLILT 31 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~--~~~i~~Vvt 31 (258)
|||+++|++.--.++..+|.++ +++++++..
T Consensus 1 mkVLviG~Ggrehal~~~l~~s~~g~~v~~~~g 33 (486)
T PRK05784 1 MKVLLVGDGAREHALAEALEKSTKGYKVYALSS 33 (486)
T ss_pred CEEEEECCchhHHHHHHHHHhCCCCCEEEEEEC
Confidence 9999999999888888889887 567766643
No 140
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=71.90 E-value=17 Score=33.40 Aligned_cols=48 Identities=17% Similarity=0.226 Sum_probs=34.9
Q ss_pred eEEEEc-CCHHHHHHHHHHHhC--CCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcE
Q psy5230 2 KIIFAG-TSISAAAILDTLYNS--EHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKI 59 (258)
Q Consensus 2 rI~f~G-s~~fa~~~L~~L~~~--~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv 59 (258)
||+++| |++.|...|+.+.+. +++++++....+. .-+.+.|.+++-.+
T Consensus 3 ~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~----------~~l~~q~~~f~p~~ 53 (385)
T PRK05447 3 RITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNV----------ELLAEQAREFRPKY 53 (385)
T ss_pred eEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCH----------HHHHHHHHHhCCCE
Confidence 899999 888999999998765 4889888764221 23566676666443
No 141
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=71.90 E-value=5.8 Score=33.61 Aligned_cols=31 Identities=16% Similarity=0.236 Sum_probs=26.5
Q ss_pred CeEEEEc-CCHHHHHHHHHHHhCCCcEEEEEc
Q psy5230 1 MKIIFAG-TSISAAAILDTLYNSEHNIVLILT 31 (258)
Q Consensus 1 mrI~f~G-s~~fa~~~L~~L~~~~~~i~~Vvt 31 (258)
|+|+++| |+..|..+.+.|++.|+++.++.-
T Consensus 18 ~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R 49 (251)
T PLN00141 18 KTVFVAGATGRTGKRIVEQLLAKGFAVKAGVR 49 (251)
T ss_pred CeEEEECCCcHHHHHHHHHHHhCCCEEEEEec
Confidence 6899999 678999999999999999876643
No 142
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=71.63 E-value=9 Score=30.86 Aligned_cols=31 Identities=23% Similarity=0.287 Sum_probs=28.3
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcC
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTK 32 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~ 32 (258)
+++++|.+.+|..+++.|.+.++++++.+..
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~g~~vvgfid~ 31 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDSGWEIVGFLDD 31 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 5889999999999999998888999999864
No 143
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=71.52 E-value=19 Score=30.97 Aligned_cols=88 Identities=15% Similarity=0.149 Sum_probs=54.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHH--CCCcEEccCCC-CCCcccccchHH
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALK--HSIKIIQPISL-KLNGKYHKIANE 77 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~--~gIpv~~~~~~-~~~~~~~~~~~~ 77 (258)
|||++||...=|..+.+.|.+.++-++.|+|.- | .+.... .+++++ ...+ ... +
T Consensus 1 m~ILvlgGTtE~r~la~~L~~~g~v~~sv~t~~----g----------~~~~~~~~~~~~v~-~G~lg~~~--------~ 57 (249)
T PF02571_consen 1 MKILVLGGTTEGRKLAERLAEAGYVIVSVATSY----G----------GELLKPELPGLEVR-VGRLGDEE--------G 57 (249)
T ss_pred CEEEEEechHHHHHHHHHHHhcCCEEEEEEhhh----h----------HhhhccccCCceEE-ECCCCCHH--------H
Confidence 999999999999999999999988224555521 1 122212 234443 3345 333 8
Q ss_pred HHHHHhcCCCcEEEEEeeCCCCCHHHHHHHHHHHHHH
Q psy5230 78 THKLLNKIEFDIMIVMGILPEDTSLTLQNKLEKLSKI 114 (258)
Q Consensus 78 ~~~~l~~~~~Dl~vv~~I~~~dt~~~L~~kl~~~g~~ 114 (258)
+.+++++.+++++|=+ .+-.+..+.+....++.+
T Consensus 58 l~~~l~~~~i~~vIDA---THPfA~~is~na~~a~~~ 91 (249)
T PF02571_consen 58 LAEFLRENGIDAVIDA---THPFAAEISQNAIEACRE 91 (249)
T ss_pred HHHHHHhCCCcEEEEC---CCchHHHHHHHHHHHHhh
Confidence 8888998999888643 133444455545554443
No 144
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=71.32 E-value=22 Score=26.94 Aligned_cols=74 Identities=11% Similarity=0.123 Sum_probs=36.9
Q ss_pred CeEEEEcCCHHHH-HHHHHHHhC-CCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEE--ccCCCCCCcccccchH
Q psy5230 1 MKIIFAGTSISAA-AILDTLYNS-EHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII--QPISLKLNGKYHKIAN 76 (258)
Q Consensus 1 mrI~f~Gs~~fa~-~~L~~L~~~-~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~--~~~~~~~~~~~~~~~~ 76 (258)
|||+|+.+.+... +.-++|.+. ...-+.|.+.--.+ ....+ ...+...++||+.- .+..+.+
T Consensus 1 ~~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~~~----~~~~p-~a~~~l~e~Gid~~~~~s~~l~~--------- 66 (126)
T TIGR02689 1 KKVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGLEV----SRVHP-TAIEVMSEIGIDISGQTSKPLEN--------- 66 (126)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcCCC----CCCCH-HHHHHHHHhCCCcccCccccCCh---------
Confidence 7999999886554 233444442 11122333321111 12222 34556677899872 2333321
Q ss_pred HHHHHHhcCCCcEEEEE
Q psy5230 77 ETHKLLNKIEFDIMIVM 93 (258)
Q Consensus 77 ~~~~~l~~~~~Dl~vv~ 93 (258)
. ....+|++|++
T Consensus 67 ~-----~~~~~D~iitm 78 (126)
T TIGR02689 67 F-----HPEDYDVVISL 78 (126)
T ss_pred h-----HhcCCCEEEEe
Confidence 1 12368999987
No 145
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=71.14 E-value=21 Score=33.19 Aligned_cols=32 Identities=9% Similarity=0.179 Sum_probs=26.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcC
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTK 32 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~ 32 (258)
.+|+++|++..|..++..|...|..-+.|+.+
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r 214 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANR 214 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeC
Confidence 47999999999999999999888755555543
No 146
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=70.96 E-value=47 Score=28.31 Aligned_cols=28 Identities=14% Similarity=0.324 Sum_probs=23.7
Q ss_pred eEEEEc-CCHHHHHHHHHHHhCCCcEEEE
Q psy5230 2 KIIFAG-TSISAAAILDTLYNSEHNIVLI 29 (258)
Q Consensus 2 rI~f~G-s~~fa~~~L~~L~~~~~~i~~V 29 (258)
||+++| |+-.|..+.+.|.++|+++.++
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~ 29 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVAL 29 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEe
Confidence 688888 5789999999999999987654
No 147
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=70.79 E-value=17 Score=29.86 Aligned_cols=103 Identities=15% Similarity=0.223 Sum_probs=56.1
Q ss_pred EEEEc-CCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHH
Q psy5230 3 IIFAG-TSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKL 81 (258)
Q Consensus 3 I~f~G-s~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~ 81 (258)
|+++| |+-.|..+.+.|+++|++++.+...+.. -.....+.++.++..+ +.+.. .+.+.
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~------------~~~~~~~~~~~~~~~d-l~~~~-------~~~~~ 60 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNS------------ESFEEKKLNVEFVIGD-LTDKE-------QLEKL 60 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTG------------GHHHHHHTTEEEEESE-TTSHH-------HHHHH
T ss_pred EEEEccCCHHHHHHHHHHHHcCCccccccccccc------------cccccccceEEEEEee-ccccc-------ccccc
Confidence 67787 5568889999999999997744432211 1122223367776553 33331 55667
Q ss_pred HhcCCCcEEEEEeeCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5230 82 LNKIEFDIMIVMGILPED-TSLTLQNKLEKLSKILIIDTIKKIEY 125 (258)
Q Consensus 82 l~~~~~Dl~vv~~I~~~d-t~~~L~~kl~~~g~~ll~~~l~~l~~ 125 (258)
++..++|.++-+.-.... ....-...+..........+++.+..
T Consensus 61 ~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~ 105 (236)
T PF01370_consen 61 LEKANIDVVIHLAAFSSNPESFEDPEEIIEANVQGTRNLLEAARE 105 (236)
T ss_dssp HHHHTESEEEEEBSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCceEEEEeecccccccccccccccccccccccccccccccc
Confidence 777789998766322210 11112223333344445555555554
No 148
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=69.95 E-value=6.5 Score=36.33 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=26.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEE
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLI 29 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~V 29 (258)
|||.|+|.+.+|.+.-..|.++||++.++
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~ 29 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGV 29 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEE
Confidence 89999999999999999999999987665
No 149
>PRK10206 putative oxidoreductase; Provisional
Probab=69.94 E-value=14 Score=33.17 Aligned_cols=66 Identities=18% Similarity=0.263 Sum_probs=41.5
Q ss_pred CeEEEEcCCHHHHH-HHHHHHhC--CCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCC-CcEEccCCCCCCcccccchH
Q psy5230 1 MKIIFAGTSISAAA-ILDTLYNS--EHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHS-IKIIQPISLKLNGKYHKIAN 76 (258)
Q Consensus 1 mrI~f~Gs~~fa~~-~L~~L~~~--~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~g-Ipv~~~~~~~~~~~~~~~~~ 76 (258)
|||+++|.+.++.. -+..+... ++++++|+... . . -.+++.+++ ++++.
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~-~-~----------~~~~~~~~~~~~~~~--------------- 54 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRH-A-K----------PEEQAPIYSHIHFTS--------------- 54 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCC-h-h----------HHHHHHhcCCCcccC---------------
Confidence 69999999986643 24545332 47888888742 1 1 135666665 33321
Q ss_pred HHHHHHhcCCCcEEEEE
Q psy5230 77 ETHKLLNKIEFDIMIVM 93 (258)
Q Consensus 77 ~~~~~l~~~~~Dl~vv~ 93 (258)
++-+.|.+.++|+++++
T Consensus 55 ~~~ell~~~~iD~V~I~ 71 (344)
T PRK10206 55 DLDEVLNDPDVKLVVVC 71 (344)
T ss_pred CHHHHhcCCCCCEEEEe
Confidence 34456667789998887
No 150
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=69.57 E-value=16 Score=35.09 Aligned_cols=76 Identities=13% Similarity=0.032 Sum_probs=49.2
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHC--C--CcEEccCCCCCCcccccchHH
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKH--S--IKIIQPISLKLNGKYHKIANE 77 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~--g--Ipv~~~~~~~~~~~~~~~~~~ 77 (258)
|++++|.+++.....+.|.+.|.+++.|+|.-.. +.....++++.... | ..++.-.+ .. +
T Consensus 365 rvaI~gdpd~~~~l~~fL~ElGmepv~v~~~~~~------~~~~~~l~~ll~~~~~~~~~~v~~~~D--l~--------~ 428 (515)
T TIGR01286 365 RFAIYGDPDFVMGLVRFVLELGCEPVHILCTNGT------KRWKAEMKALLAASPYGQNATVWIGKD--LW--------H 428 (515)
T ss_pred eEEEECCHHHHHHHHHHHHHCCCEEEEEEeCCCC------HHHHHHHHHHHhcCCCCCccEEEeCCC--HH--------H
Confidence 7899999999999999999999999988885211 11112244443321 1 22322111 12 6
Q ss_pred HHHHHhcCCCcEEEEE
Q psy5230 78 THKLLNKIEFDIMIVM 93 (258)
Q Consensus 78 ~~~~l~~~~~Dl~vv~ 93 (258)
+.+.++..+||++|--
T Consensus 429 l~~~l~~~~~DlliG~ 444 (515)
T TIGR01286 429 LRSLVFTEPVDFLIGN 444 (515)
T ss_pred HHHHHhhcCCCEEEEC
Confidence 6677888899999865
No 151
>PLN02712 arogenate dehydrogenase
Probab=69.34 E-value=18 Score=35.86 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=24.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEE
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIV 27 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~ 27 (258)
|||+|+|.+.+|....+.|.+.|++|+
T Consensus 370 ~kIgIIGlG~mG~slA~~L~~~G~~V~ 396 (667)
T PLN02712 370 LKIAIVGFGNFGQFLAKTMVKQGHTVL 396 (667)
T ss_pred CEEEEEecCHHHHHHHHHHHHCcCEEE
Confidence 799999999999999999998888875
No 152
>PRK11579 putative oxidoreductase; Provisional
Probab=68.95 E-value=28 Score=31.22 Aligned_cols=32 Identities=3% Similarity=0.121 Sum_probs=24.5
Q ss_pred CeEEEEcCCHHHHH-HHHHHHhC-CCcEEEEEcC
Q psy5230 1 MKIIFAGTSISAAA-ILDTLYNS-EHNIVLILTK 32 (258)
Q Consensus 1 mrI~f~Gs~~fa~~-~L~~L~~~-~~~i~~Vvt~ 32 (258)
|||+++|.+.++.. .+..+... +.++++|+..
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~ 38 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSS 38 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECC
Confidence 69999999999874 45666554 5889888763
No 153
>PRK06849 hypothetical protein; Provisional
Probab=68.88 E-value=7.3 Score=35.56 Aligned_cols=33 Identities=15% Similarity=0.297 Sum_probs=28.6
Q ss_pred CeEEEEcCCH-HHHHHHHHHHhCCCcEEEEEcCC
Q psy5230 1 MKIIFAGTSI-SAAAILDTLYNSEHNIVLILTKP 33 (258)
Q Consensus 1 mrI~f~Gs~~-fa~~~L~~L~~~~~~i~~Vvt~p 33 (258)
|||++.|... .+..+.+.|.+.|++++++-+.+
T Consensus 5 ~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 5 KTVLITGARAPAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 7999999986 68999999999999998776654
No 154
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=68.22 E-value=8.5 Score=33.85 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=25.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEE
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIV 27 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~ 27 (258)
|||.|+|.+.++.+....|++.|+++.
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~ 27 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLH 27 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEE
Confidence 899999999999999999999998774
No 155
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=68.10 E-value=9.1 Score=33.44 Aligned_cols=29 Identities=14% Similarity=0.349 Sum_probs=26.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEE
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLI 29 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~V 29 (258)
|||+|+|.+..|...-..|.++|+++..+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~ 29 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFL 29 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEE
Confidence 89999999999999999999989987554
No 156
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=68.03 E-value=25 Score=27.11 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=24.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEc
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILT 31 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt 31 (258)
+||+++|....+....+.|.+.+...+.|+.
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~ 50 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVN 50 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEc
Confidence 4799999999999999999987644444543
No 157
>PF01176 eIF-1a: Translation initiation factor 1A / IF-1; InterPro: IPR006196 The S1 domain of around 70 amino acids, originally identified in ribosomal protein S1, is found in a large number of RNA-associated proteins. It has been shown that S1 proteins bind RNA through their S1 domains with some degree of sequence specificity. This type of S1 domain is found in translation initiation factor 1. The solution structure of one S1 RNA-binding domain from Escherichia coli polynucleotide phosphorylase has been determined []. It displays some similarity with the cold shock domain (CSD) (IPR002059 from INTERPRO). Both the S1 and the CSD domain consist of an antiparallel beta barrel of the same topology with 5 beta strands. This fold is also shared by many other proteins of unrelated function and is known as the OB fold. However, the S1 and CSD fold can be distinguished from the other OB folds by the presence of a short 3(10) helix at the end of strand 3. This unique feature is likely to form a part of the DNA/RNA-binding site. This entry is specific for bacterial, chloroplastic and eukaryotic IF-1 type S1 domains.; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1JT8_A 3I4O_A 1AH9_A 1ZO1_W 1D7Q_A 2OQK_A 2DGY_A 1HR0_W.
Probab=67.78 E-value=15 Score=24.61 Aligned_cols=45 Identities=20% Similarity=0.175 Sum_probs=29.6
Q ss_pred CcEEEEEeeCCcEEEEecCcEEEEEEEecCCCCccCHHHHhccccCCCcccccC
Q psy5230 205 PGTILNVNFHNGILVVCGKNVIKLLELQKNNKKKISATEFINGCIKNIKYFISV 258 (258)
Q Consensus 205 pG~i~~~~~~~~l~V~c~dg~l~i~~lq~~gkk~~~a~~f~~g~~~~~g~~~~~ 258 (258)
-|.|+..-.++.+.|.|.||.-.+.. ++++ |.+-..++.|+++-|
T Consensus 6 ~~~V~~~lG~~~~~V~~~dg~~~l~~--------i~gK-~r~~iwI~~GD~V~V 50 (65)
T PF01176_consen 6 IGRVTEMLGNNLFEVECEDGEERLAR--------IPGK-FRKRIWIKRGDFVLV 50 (65)
T ss_dssp EEEEEEEESSSEEEEEETTSEEEEEE--------E-HH-HHTCC---TTEEEEE
T ss_pred EEEEEEECCCCEEEEEeCCCCEEEEE--------eccc-eeeeEecCCCCEEEE
Confidence 36677666577788999999766653 4566 778788888887643
No 158
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=67.74 E-value=53 Score=27.03 Aligned_cols=99 Identities=16% Similarity=0.155 Sum_probs=52.4
Q ss_pred EEEEcCCHHHHHHH-----HHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHH
Q psy5230 3 IIFAGTSISAAAIL-----DTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANE 77 (258)
Q Consensus 3 I~f~Gs~~fa~~~L-----~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~ 77 (258)
|+|+|-...|..+. ..+..++..+ +++|- |.. |- --...++.||+..|+|++......++. +++.+
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v-~lis~-D~~--R~--ga~eQL~~~a~~l~vp~~~~~~~~~~~---~~~~~ 74 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKV-ALISA-DTY--RI--GAVEQLKTYAEILGVPFYVARTESDPA---EIARE 74 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--E-EEEEE-STS--ST--HHHHHHHHHHHHHTEEEEESSTTSCHH---HHHHH
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccc-eeecC-CCC--Cc--cHHHHHHHHHHHhccccchhhcchhhH---HHHHH
Confidence 56777775555332 2223334444 66663 221 10 012357899999999998765443321 11223
Q ss_pred HHHHHhcCCCcEEEEEeeCCCCCHHHHHHHHHH
Q psy5230 78 THKLLNKIEFDIMIVMGILPEDTSLTLQNKLEK 110 (258)
Q Consensus 78 ~~~~l~~~~~Dl~vv~~I~~~dt~~~L~~kl~~ 110 (258)
.++..+..++|++++=...-..+-.++.++|..
T Consensus 75 ~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~ 107 (196)
T PF00448_consen 75 ALEKFRKKGYDLVLIDTAGRSPRDEELLEELKK 107 (196)
T ss_dssp HHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHH
T ss_pred HHHHHhhcCCCEEEEecCCcchhhHHHHHHHHH
Confidence 445566678999987644444444555444433
No 159
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=67.47 E-value=73 Score=27.59 Aligned_cols=32 Identities=16% Similarity=0.431 Sum_probs=26.8
Q ss_pred CeEEEEcC-CHHHHHHHHHHHhCCCcEEEEEcC
Q psy5230 1 MKIIFAGT-SISAAAILDTLYNSEHNIVLILTK 32 (258)
Q Consensus 1 mrI~f~Gs-~~fa~~~L~~L~~~~~~i~~Vvt~ 32 (258)
|+|++.|. +-.|..+.+.|++.|+++.++...
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~ 33 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRP 33 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEec
Confidence 79999985 678999999999999988777654
No 160
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=67.27 E-value=15 Score=33.31 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=23.1
Q ss_pred CeEEEEcCCH-----HHHHHHHHHHhCCCcEEEEEcC
Q psy5230 1 MKIIFAGTSI-----SAAAILDTLYNSEHNIVLILTK 32 (258)
Q Consensus 1 mrI~f~Gs~~-----fa~~~L~~L~~~~~~i~~Vvt~ 32 (258)
|||+|+..+. ..+++.++|.++||+|. ++|.
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~-~~t~ 36 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVR-VATP 36 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEE-EeeC
Confidence 8999986663 45677788999999985 4443
No 161
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=67.23 E-value=14 Score=32.93 Aligned_cols=30 Identities=10% Similarity=0.088 Sum_probs=25.6
Q ss_pred CeEEEEcC-CHHHHHHHHHHHhCCCcEEEEE
Q psy5230 1 MKIIFAGT-SISAAAILDTLYNSEHNIVLIL 30 (258)
Q Consensus 1 mrI~f~Gs-~~fa~~~L~~L~~~~~~i~~Vv 30 (258)
|||++.|. +-.|..+.+.|++.|++++++.
T Consensus 11 ~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~ 41 (353)
T PLN02896 11 GTYCVTGATGYIGSWLVKLLLQRGYTVHATL 41 (353)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 79999995 5689999999999999887654
No 162
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=67.18 E-value=9.2 Score=34.06 Aligned_cols=29 Identities=14% Similarity=0.115 Sum_probs=26.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEE
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLI 29 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~V 29 (258)
|||+|+|.+.+|......|.++||++..+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~ 33 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLW 33 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEE
Confidence 89999999999999999999999887543
No 163
>PLN02712 arogenate dehydrogenase
Probab=67.08 E-value=27 Score=34.66 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=25.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEE
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVL 28 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~ 28 (258)
|||+|+|.+.+|......|.+.|++|.+
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~G~~V~~ 80 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQGHTVLA 80 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEE
Confidence 7999999999999999999998888754
No 164
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=66.93 E-value=9.4 Score=33.25 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=26.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEE
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLIL 30 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vv 30 (258)
|||+++|.+.+|...-..|.+.|+++..+.
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~ 30 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVA 30 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEE
Confidence 899999999999999999998888875554
No 165
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=66.88 E-value=55 Score=28.11 Aligned_cols=77 Identities=8% Similarity=0.217 Sum_probs=42.2
Q ss_pred eEEEEcC-CHHHHHHHHHHHhCC--CcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHH
Q psy5230 2 KIIFAGT-SISAAAILDTLYNSE--HNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANET 78 (258)
Q Consensus 2 rI~f~Gs-~~fa~~~L~~L~~~~--~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~ 78 (258)
||++.|. +..|..+++.|++++ ++++++ ....... + ...+.......++.++.. ++.+.. .+
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~-~~~~~~~-~-----~~~~~~~~~~~~~~~~~~-Dl~~~~-------~~ 65 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVL-DKLTYAG-N-----LENLADLEDNPRYRFVKG-DIGDRE-------LV 65 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEe-cCCCcch-h-----hhhhhhhccCCCcEEEEc-CCcCHH-------HH
Confidence 5778875 578999999999876 566543 2211111 0 011122211224555443 344431 45
Q ss_pred HHHHhcCCCcEEEEE
Q psy5230 79 HKLLNKIEFDIMIVM 93 (258)
Q Consensus 79 ~~~l~~~~~Dl~vv~ 93 (258)
.+.++...+|++|-+
T Consensus 66 ~~~~~~~~~d~vi~~ 80 (317)
T TIGR01181 66 SRLFTEHQPDAVVHF 80 (317)
T ss_pred HHHHhhcCCCEEEEc
Confidence 566676779998866
No 166
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=66.57 E-value=13 Score=33.16 Aligned_cols=26 Identities=19% Similarity=0.143 Sum_probs=24.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcE
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNI 26 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i 26 (258)
++|+|+|.+..|......|.++|+++
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~V 29 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNV 29 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeE
Confidence 58999999999999999999998875
No 167
>TIGR02014 BchZ chlorophyllide reductase subunit Z. This model represents the Z subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=66.31 E-value=90 Score=29.59 Aligned_cols=31 Identities=13% Similarity=0.101 Sum_probs=25.8
Q ss_pred eEEEEcCCHHHHHHHHHHH-hCCCcEEEEEcC
Q psy5230 2 KIIFAGTSISAAAILDTLY-NSEHNIVLILTK 32 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~-~~~~~i~~Vvt~ 32 (258)
|++++|.++.+...-+.|. +.|..++.++|.
T Consensus 282 ~vaI~gd~d~~~gl~~fL~~ElGm~~~~~~t~ 313 (468)
T TIGR02014 282 RFGIVASETYARGIRHVLEDELGLPCLFSLAR 313 (468)
T ss_pred eEEEEcCHHHHHHHHHHHHHHCCCceEEEeec
Confidence 5788999999999999998 778887777763
No 168
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=66.19 E-value=1.1e+02 Score=28.95 Aligned_cols=86 Identities=13% Similarity=0.167 Sum_probs=54.2
Q ss_pred eEEEEcCCHHHHHHHHHHHhC---CCcEEEEEcCCCCCCCCCCc-c-CCcHHHHHHHHCCCcEE--ccCCCCCCcccccc
Q psy5230 2 KIIFAGTSISAAAILDTLYNS---EHNIVLILTKPDLHSGRGMK-L-NFSPVKKYALKHSIKII--QPISLKLNGKYHKI 74 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~---~~~i~~Vvt~pd~~~gr~~~-~-~~~~v~~~A~~~gIpv~--~~~~~~~~~~~~~~ 74 (258)
|++++|+++-+..+.+.|.++ |+++++++...+ ..|-+-. . ..+.+.+++.++++... ..+..... .
T Consensus 145 rVLIvGaG~~g~~l~~~L~~~~~~g~~vVGfiDdd~-~~g~~VpvlG~~~dL~~~v~~~~IdeViIAip~~~~~-----~ 218 (463)
T PRK10124 145 MVAVAGDLPAGQMLLESFRNEPWLGFEVVGVYHDPK-PGGVSNDWAGNLQQLVEDAKAGKIHNVYIAMSMCDGA-----R 218 (463)
T ss_pred cEEEEECCHHHHHHHHHHhcCccCCeEEEEEEeCCc-cccCCCCcCCCHHHHHHHHHhCCCCEEEEeCCCcchH-----H
Confidence 689999999999999999775 578999986422 1121110 1 12357778888988743 33322211 1
Q ss_pred hHHHHHHHhcCCCcEEEEE
Q psy5230 75 ANETHKLLNKIEFDIMIVM 93 (258)
Q Consensus 75 ~~~~~~~l~~~~~Dl~vv~ 93 (258)
..++++.++....++.++.
T Consensus 219 l~ell~~~~~~~v~V~ivP 237 (463)
T PRK10124 219 VKKLVRQLADTTCSVLLIP 237 (463)
T ss_pred HHHHHHHHHHcCCeEEEec
Confidence 2266677777777776665
No 169
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=65.53 E-value=9.9 Score=34.75 Aligned_cols=76 Identities=13% Similarity=0.123 Sum_probs=48.7
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHH
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKL 81 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~ 81 (258)
||+++|.+..+....+.|.+.|.+++.|++....+. ....+.....+....++...+. . ++.+.
T Consensus 273 ~v~i~~~~~~~~~l~~~L~elG~~v~~v~~~~~~~~------~~e~~~~~~~~~~~~v~~~~~~--~--------~~~~~ 336 (398)
T PF00148_consen 273 RVAIYGDPDRALGLARFLEELGMEVVAVGCDDKSPE------DEERLRWLLEESDPEVIIDPDP--E--------EIEEL 336 (398)
T ss_dssp EEEEESSHHHHHHHHHHHHHTT-EEEEEEESSGGHH------HHHHHHHHHHTTCSEEEESCBH--H--------HHHHH
T ss_pred eEEEEcCchhHHHHHHHHHHcCCeEEEEEEccCchh------HHHHHHHHhhCCCcEEEeCCCH--H--------HHHHH
Confidence 788999999999888999999999999988532111 0012333444444455443221 2 77788
Q ss_pred HhcCCCcEEEEE
Q psy5230 82 LNKIEFDIMIVM 93 (258)
Q Consensus 82 l~~~~~Dl~vv~ 93 (258)
+++.+||+++.-
T Consensus 337 l~~~~pdl~ig~ 348 (398)
T PF00148_consen 337 LEELKPDLLIGS 348 (398)
T ss_dssp HHHHT-SEEEES
T ss_pred HHhcCCCEEEec
Confidence 899999999754
No 170
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=65.31 E-value=23 Score=34.79 Aligned_cols=49 Identities=18% Similarity=0.193 Sum_probs=34.9
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccC
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPI 63 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~ 63 (258)
+|+++|.+.+|..+.+.|.+++++++.|=..|+ -.+.+.+.|.+++.-+
T Consensus 402 ~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~-------------~v~~~~~~g~~v~~GD 450 (621)
T PRK03562 402 RVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPD-------------HIETLRKFGMKVFYGD 450 (621)
T ss_pred cEEEEecChHHHHHHHHHHhCCCCEEEEECCHH-------------HHHHHHhcCCeEEEEe
Confidence 689999999999999999998888755522221 1333456788876543
No 171
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=65.31 E-value=18 Score=27.24 Aligned_cols=38 Identities=13% Similarity=0.222 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEcc
Q psy5230 11 SAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQP 62 (258)
Q Consensus 11 fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~ 62 (258)
-.+.+-++|.++||++. +.|.+ ...+.+++.|+++...
T Consensus 14 P~lala~~L~~rGh~V~-~~~~~-------------~~~~~v~~~Gl~~~~~ 51 (139)
T PF03033_consen 14 PFLALARALRRRGHEVR-LATPP-------------DFRERVEAAGLEFVPI 51 (139)
T ss_dssp HHHHHHHHHHHTT-EEE-EEETG-------------GGHHHHHHTT-EEEES
T ss_pred HHHHHHHHHhccCCeEE-Eeecc-------------cceecccccCceEEEe
Confidence 45677799999999997 66653 2678889999998654
No 172
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=65.29 E-value=26 Score=31.17 Aligned_cols=31 Identities=23% Similarity=0.317 Sum_probs=25.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcC
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTK 32 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~ 32 (258)
|||.++|.+..|.-..-.|.+.| +.+.++.+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R 31 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVR 31 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEEec
Confidence 89999999999999999999998 44455544
No 173
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=65.03 E-value=9.8 Score=33.10 Aligned_cols=29 Identities=21% Similarity=0.217 Sum_probs=26.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEE
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLI 29 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~V 29 (258)
|||.|+|.+.+|......|.+.|++|.++
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~ 29 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGV 29 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEE
Confidence 89999999999999999999988887555
No 174
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=65.02 E-value=1.3e+02 Score=28.76 Aligned_cols=74 Identities=14% Similarity=0.055 Sum_probs=43.2
Q ss_pred eEEEEcCCHHHHHHHHHHH-hCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHH
Q psy5230 2 KIIFAGTSISAAAILDTLY-NSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHK 80 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~-~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~ 80 (258)
|++++|.+..+...-+.|. +.|.+++.+-|.+.... ..+.+..+..+-.+.-.+ |.. ++.+
T Consensus 307 rv~I~gd~~~a~~l~~~L~~ELGm~vv~~g~~~~~~~--------~~~~~~~~~~~~~~~i~~---D~~-------ei~~ 368 (513)
T CHL00076 307 KAVVFGDATHAASMTKILAREMGIRVSCAGTYCKHDA--------EWFKEQVQGFCDEILITD---DHT-------EVGD 368 (513)
T ss_pred EEEEEcCchHHHHHHHHHHHhCCCEEEEecCcccchh--------HHHHHHHHHhccCcEEec---CHH-------HHHH
Confidence 7889999999998888885 67888864444332111 112222222221111111 211 7778
Q ss_pred HHhcCCCcEEEEE
Q psy5230 81 LLNKIEFDIMIVM 93 (258)
Q Consensus 81 ~l~~~~~Dl~vv~ 93 (258)
.+++.+||+++--
T Consensus 369 ~I~~~~pdliiGs 381 (513)
T CHL00076 369 MIARVEPSAIFGT 381 (513)
T ss_pred HHHhcCCCEEEEC
Confidence 8899999999863
No 175
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=64.88 E-value=11 Score=30.13 Aligned_cols=35 Identities=31% Similarity=0.227 Sum_probs=24.5
Q ss_pred HHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcE-Ecc
Q psy5230 17 DTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKI-IQP 62 (258)
Q Consensus 17 ~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv-~~~ 62 (258)
+.|.+.|.++ +++|.-+ ...|+..|++.||+. |+-
T Consensus 45 k~l~~~Gi~v-AIITGr~----------s~ive~Ra~~LGI~~~~qG 80 (170)
T COG1778 45 KLLLKSGIKV-AIITGRD----------SPIVEKRAKDLGIKHLYQG 80 (170)
T ss_pred HHHHHcCCeE-EEEeCCC----------CHHHHHHHHHcCCceeeec
Confidence 4455668777 8898432 235899999999995 443
No 176
>KOG3023|consensus
Probab=64.71 E-value=13 Score=31.93 Aligned_cols=78 Identities=23% Similarity=0.226 Sum_probs=49.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEc---cCCCCCCcccccchHHH
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQ---PISLKLNGKYHKIANET 78 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~---~~~~~~~~~~~~~~~~~ 78 (258)
+|+=+|..+|+..-|+.|++. .+++==.++-. ..+. =..|+.+.+||.+|.|..+. |..+-+.+ +|
T Consensus 170 kI~~lGvSDfda~qLe~Li~s-aqVvP~snqVn-L~~c--CvvPpdLqafa~~hdiQLltHsDP~~llse~-------~f 238 (285)
T KOG3023|consen 170 KIGTLGVSDFDANQLERLISS-AQVVPESNQVN-LGQC--CVVPPDLQAFADRHDIQLLTHSDPSALLSES-------EF 238 (285)
T ss_pred ceeeeeecccCHHHHHHHHhh-hccccccceee-cccc--ccCCHHHHHHhhhcceeeeecCCchhcCChh-------hh
Confidence 688899999999999999885 22210001100 0000 12456799999999999865 33232221 77
Q ss_pred HHHHhcCCCcEE
Q psy5230 79 HKLLNKIEFDIM 90 (258)
Q Consensus 79 ~~~l~~~~~Dl~ 90 (258)
.+.+....||+.
T Consensus 239 ~e~~~~sqpdi~ 250 (285)
T KOG3023|consen 239 TEVIHKSQPDIP 250 (285)
T ss_pred hhhhhccCcccC
Confidence 788877777764
No 177
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=64.17 E-value=11 Score=33.11 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=26.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEc
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILT 31 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt 31 (258)
|||+|+|.+.+|......|.++|+++. ++.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~-~~~ 31 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVT-LWA 31 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEE-EEE
Confidence 799999999999999999999998874 444
No 178
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=64.14 E-value=30 Score=32.23 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=25.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCC
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPD 34 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd 34 (258)
|||+++|++.--.++..+|.++++- .-|++.|.
T Consensus 5 ~kvLviG~g~rehal~~~~~~~~~~-~~~~~~pg 37 (426)
T PRK13789 5 LKVLLIGSGGRESAIAFALRKSNLL-SELKVFPG 37 (426)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCC-CEEEEECC
Confidence 8999999999999999999888632 23444443
No 179
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=63.93 E-value=56 Score=27.38 Aligned_cols=50 Identities=16% Similarity=0.225 Sum_probs=35.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEc
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQ 61 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~ 61 (258)
.+|+++|.++-|..=.+.|++.|-++ -|+++ +. ...++.++++.+|..++
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v-~Vvs~-~~---------~~el~~~~~~~~i~~~~ 62 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADV-TVVSP-EF---------EPELKALIEEGKIKWIE 62 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEE-EEEcC-Cc---------cHHHHHHHHhcCcchhh
Confidence 37999999999999999999988666 45552 11 23466666666655544
No 180
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=63.92 E-value=36 Score=32.07 Aligned_cols=74 Identities=15% Similarity=0.020 Sum_probs=45.6
Q ss_pred eEEEEcCCHHHHHHHHHHH-hCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCC-CcEEccCCCCCCcccccchHHHH
Q psy5230 2 KIIFAGTSISAAAILDTLY-NSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHS-IKIIQPISLKLNGKYHKIANETH 79 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~-~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~g-Ipv~~~~~~~~~~~~~~~~~~~~ 79 (258)
|++++|.+..+....+.|. +.|.+++++.|.-. ....+++...... -.++ .+..+.. ++.
T Consensus 327 rvaI~~~~~~~~~l~~~l~~ElGmevv~~~~~~~---------~~~~~~~~~~~~~~~~~~-i~d~~~~--------e~~ 388 (457)
T TIGR01284 327 KVWVWSGGPKLWHWPRPLEDELGMEVVAVSTKFG---------HEDDYEKIIARVREGTVI-IDDPNEL--------ELE 388 (457)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCCEEEEEEEEeC---------CHHHHHHHHHhcCCCeEE-EeCCCHH--------HHH
Confidence 7888887778887888887 58999988877421 1122344433322 1121 1222222 667
Q ss_pred HHHhcCCCcEEEEE
Q psy5230 80 KLLNKIEFDIMIVM 93 (258)
Q Consensus 80 ~~l~~~~~Dl~vv~ 93 (258)
+.++..+||+++.-
T Consensus 389 ~~i~~~~pDllig~ 402 (457)
T TIGR01284 389 EIIEKYKPDIILTG 402 (457)
T ss_pred HHHHhcCCCEEEec
Confidence 77889999998765
No 181
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=63.88 E-value=10 Score=34.93 Aligned_cols=31 Identities=26% Similarity=0.236 Sum_probs=26.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEc
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILT 31 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt 31 (258)
|||.++|++-.|+-+---|.+.||++++|=-
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDi 31 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDI 31 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeC
Confidence 9999999999998777777788999988744
No 182
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=63.87 E-value=13 Score=31.29 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=27.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCC--CcEEEEEcCC
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSE--HNIVLILTKP 33 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~--~~i~~Vvt~p 33 (258)
|||+|+.++.++.+..+.|...+ .++++|.-.|
T Consensus 2 mki~vlt~g~yG~R~~~nl~~~~f~~~~v~v~~~P 36 (224)
T COG1810 2 MKILVLTDGEYGKRAVNNLACKGFKNQFVAVKEYP 36 (224)
T ss_pred cEEEEEeeccchHHHHHhHhhhccccceEEEEecc
Confidence 89999999999999999998765 4566776554
No 183
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=63.78 E-value=11 Score=33.11 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=25.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEE
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVL 28 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~ 28 (258)
|||.|+|.+.++...-..|.++|+++..
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~ 28 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVG 28 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEE
Confidence 8999999999999999999999988753
No 184
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=63.62 E-value=43 Score=31.54 Aligned_cols=79 Identities=14% Similarity=0.199 Sum_probs=48.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHC--CCcEEccCCCCCCcccccchHHH
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKH--SIKIIQPISLKLNGKYHKIANET 78 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~--gIpv~~~~~~~~~~~~~~~~~~~ 78 (258)
.|++++|.++.+...-+.|.+.|.+++.+++....+. ......++++.... +..++...+. . ++
T Consensus 313 krvai~~~~~~~~~l~~~l~elGm~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~vv~~~d~--~--------~l 378 (461)
T TIGR02931 313 KRVAIYGNPDLVIGLAEFCLDLEMKPVLLLLGDDNSG----YVDDPRIKALQENVDYDMEIVTNADF--W--------EL 378 (461)
T ss_pred CeEEEEeCHHHHHHHHHHHHHCCCEEEEEEECCCCcc----cchhHHHHHHHhhCCCCceEEeCCCH--H--------HH
Confidence 4788999999999999999988999887776422111 00112244444443 2233322221 1 66
Q ss_pred HHHHhc--CCCcEEEEE
Q psy5230 79 HKLLNK--IEFDIMIVM 93 (258)
Q Consensus 79 ~~~l~~--~~~Dl~vv~ 93 (258)
.+.+++ .+||+++.-
T Consensus 379 ~~~i~~~~~~~Dliig~ 395 (461)
T TIGR02931 379 ESRIKNQGLELDLILGH 395 (461)
T ss_pred HHHHHhcCCCCCEEEEC
Confidence 677775 689999865
No 185
>KOG0685|consensus
Probab=63.61 E-value=22 Score=33.57 Aligned_cols=59 Identities=29% Similarity=0.328 Sum_probs=48.6
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCc-----------------cCCcHHHHHHHHCC-CcEE
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMK-----------------LNFSPVKKYALKHS-IKII 60 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~-----------------~~~~~v~~~A~~~g-Ipv~ 60 (258)
||+++|-+-.|+.+-..|+++++..+.|+-..|+--||-.. ..-+||-++|+++| ++.+
T Consensus 23 kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d~~ielGAqwihG~~gNpVY~la~~~g~~~~~ 99 (498)
T KOG0685|consen 23 KIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFADGVIELGAQWIHGEEGNPVYELAKEYGDLKLL 99 (498)
T ss_pred eEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCCCeEeecceeecCCCCChHHHHHHHhCcccee
Confidence 79999999999999999999998888999888888888221 13478999999887 5554
No 186
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=62.54 E-value=35 Score=32.28 Aligned_cols=75 Identities=15% Similarity=0.207 Sum_probs=47.0
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHH
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKL 81 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~ 81 (258)
|++++|.+.......+.|.+.|.+++.+++....+. ....+.... +.+..++. ..+.. ++.+.
T Consensus 326 ~vaI~~~~~~~~~la~~l~ElGm~v~~~~~~~~~~~------~~~~l~~~~-~~~~~v~~--d~~~~--------e~~~~ 388 (475)
T PRK14478 326 RVLLYTGGVKSWSVVKALQELGMEVVGTSVKKSTDE------DKERIKELM-GPDAHMID--DANPR--------ELYKM 388 (475)
T ss_pred EEEEEcCCchHHHHHHHHHHCCCEEEEEEEECCCHH------HHHHHHHHc-CCCcEEEe--CCCHH--------HHHHH
Confidence 788888888888888889999999998888632111 001122222 12333322 22222 67778
Q ss_pred HhcCCCcEEEEE
Q psy5230 82 LNKIEFDIMIVM 93 (258)
Q Consensus 82 l~~~~~Dl~vv~ 93 (258)
++..+||+++.-
T Consensus 389 i~~~~pDliig~ 400 (475)
T PRK14478 389 LKEAKADIMLSG 400 (475)
T ss_pred HhhcCCCEEEec
Confidence 888999999865
No 187
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=62.37 E-value=69 Score=27.13 Aligned_cols=82 Identities=16% Similarity=0.116 Sum_probs=47.6
Q ss_pred HHHHHHHHhCCCcEEEEEcCCCCCCCCCC--ccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHHHhcCCCcEE
Q psy5230 13 AAILDTLYNSEHNIVLILTKPDLHSGRGM--KLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKLLNKIEFDIM 90 (258)
Q Consensus 13 ~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~--~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dl~ 90 (258)
.-.+-...+.|+++..+++-.+....+-. ...-.-+...|+..|||++....-.... ....++.+.|+.+++|.+
T Consensus 14 ~~Al~~a~~~G~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g~~e---~eve~L~~~l~~l~~d~i 90 (223)
T COG2102 14 FYALYLALEEGHEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSGEEE---REVEELKEALRRLKVDGI 90 (223)
T ss_pred HHHHHHHHHcCCeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCccch---hhHHHHHHHHHhCcccEE
Confidence 33444444668999877774322111111 1222346788999999987643211110 112267788999999999
Q ss_pred EEEeeCC
Q psy5230 91 IVMGILP 97 (258)
Q Consensus 91 vv~~I~~ 97 (258)
++-.|.-
T Consensus 91 v~GaI~s 97 (223)
T COG2102 91 VAGAIAS 97 (223)
T ss_pred EEchhhh
Confidence 8776653
No 188
>PRK13530 arsenate reductase; Provisional
Probab=62.36 E-value=37 Score=26.06 Aligned_cols=53 Identities=13% Similarity=-0.054 Sum_probs=28.1
Q ss_pred CeEEEEcCCHHHH-HHHHHHHhC--CCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcE
Q psy5230 1 MKIIFAGTSISAA-AILDTLYNS--EHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKI 59 (258)
Q Consensus 1 mrI~f~Gs~~fa~-~~L~~L~~~--~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv 59 (258)
+||+|+.+++... +.-++|.+. +.. +.|.+.--.+. .......+...++||++
T Consensus 4 ~~vLFvC~~N~cRS~mAEal~~~~~~~~-~~v~SAG~~~~-----~~~~~a~~~l~e~Gi~~ 59 (133)
T PRK13530 4 KTIYFLCTGNSCRSQMAEGWGKQYLGDK-WNVYSAGIEAH-----GVNPNAIKAMKEVGIDI 59 (133)
T ss_pred CEEEEEcCCchhHHHHHHHHHHHhcCCC-EEEECCCCCCC-----CCCHHHHHHHHHcCCCc
Confidence 5899999886554 333444442 222 23333211111 12234566778899987
No 189
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=62.29 E-value=35 Score=23.18 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=39.2
Q ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCcc-----CCcHHHHHHHHCCCcE
Q psy5230 3 IIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKL-----NFSPVKKYALKHSIKI 59 (258)
Q Consensus 3 I~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~-----~~~~v~~~A~~~gIpv 59 (258)
++.|-|...+...-+.|.++|+....+=|++.-..|.|.-+ ....+.++.+++||++
T Consensus 5 ~i~F~st~~a~~~ek~lk~~gi~~~liP~P~~i~~~CG~al~~~~~d~~~i~~~l~~~~i~~ 66 (73)
T PF11823_consen 5 LITFPSTHDAMKAEKLLKKNGIPVRLIPTPREISAGCGLALRFEPEDLEKIKEILEENGIEY 66 (73)
T ss_pred EEEECCHHHHHHHHHHHHHCCCcEEEeCCChhccCCCCEEEEEChhhHHHHHHHHHHCCCCe
Confidence 56788999999999999888876644433334355666532 2234777888888876
No 190
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=62.26 E-value=13 Score=30.39 Aligned_cols=55 Identities=16% Similarity=0.253 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccC
Q psy5230 9 SISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPI 63 (258)
Q Consensus 9 ~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~ 63 (258)
..-|..+++.|.+.|+++.+-+-.|.-.-----......++++|.+.||+++..+
T Consensus 8 aPCs~~~~~~L~~~g~~vt~~fyNPNIhP~~Ey~~R~~~~~~~~~~~~i~~i~~~ 62 (176)
T PF02677_consen 8 APCSTYPLERLREEGFDVTGYFYNPNIHPYEEYERRLEELKRFAEKLGIPLIEGD 62 (176)
T ss_pred ccccHHHHHHHHHCCCCeEEEEeCCCCCcHHHHHHHHHHHHHHHHHcCCCEEecC
Confidence 3456778999999999999999887431100001122468999999999998755
No 191
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=62.22 E-value=29 Score=27.81 Aligned_cols=75 Identities=21% Similarity=0.160 Sum_probs=42.9
Q ss_pred EEEEcCCH---HHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHH
Q psy5230 3 IIFAGTSI---SAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETH 79 (258)
Q Consensus 3 I~f~Gs~~---fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~ 79 (258)
++|+|++. -|..+.+.|.+.|+++..++..|..... ....--.+.+++.|+++.......+. .
T Consensus 29 ~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~----------~ 94 (169)
T PF03853_consen 29 LILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLS----EDAKQQLEILKKMGIKIIELDSDEDL----------S 94 (169)
T ss_dssp EEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTS----HHHHHHHHHHHHTT-EEESSCCGSGG----------G
T ss_pred EEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCC----HHHHHHHHHHHhcCCcEeeccccchh----------h
Confidence 35678875 5566778888889887665554432221 01112356788889998775544321 1
Q ss_pred HHHhcCCCcEEEEE
Q psy5230 80 KLLNKIEFDIMIVM 93 (258)
Q Consensus 80 ~~l~~~~~Dl~vv~ 93 (258)
..+. .+|++|=+
T Consensus 95 ~~~~--~~dlIIDa 106 (169)
T PF03853_consen 95 EALE--PADLIIDA 106 (169)
T ss_dssp HHGS--CESEEEEE
T ss_pred cccc--cccEEEEe
Confidence 2222 78888876
No 192
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=62.10 E-value=15 Score=31.77 Aligned_cols=31 Identities=23% Similarity=0.375 Sum_probs=22.2
Q ss_pred CeEEEEcCCH-------------HHHHHHHHHHhCCCcEEEEEc
Q psy5230 1 MKIIFAGTSI-------------SAAAILDTLYNSEHNIVLILT 31 (258)
Q Consensus 1 mrI~f~Gs~~-------------fa~~~L~~L~~~~~~i~~Vvt 31 (258)
|||+++++.- +.....+.|.++||++..+..
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~ 44 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFAS 44 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEec
Confidence 9999988752 245666778888898864443
No 193
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=61.77 E-value=30 Score=28.67 Aligned_cols=30 Identities=17% Similarity=0.119 Sum_probs=23.7
Q ss_pred eEEEEcC-CHHHHHHHHHHHhCCCcEEEEEc
Q psy5230 2 KIIFAGT-SISAAAILDTLYNSEHNIVLILT 31 (258)
Q Consensus 2 rI~f~Gs-~~fa~~~L~~L~~~~~~i~~Vvt 31 (258)
++++.|. ...|..+.+.|++.|++++.+..
T Consensus 7 ~vlItGasg~iG~~l~~~l~~~G~~V~~~~r 37 (251)
T PRK07231 7 VAIVTGASSGIGEGIARRFAAEGARVVVTDR 37 (251)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 6788885 56999999999999998655543
No 194
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=61.72 E-value=32 Score=28.29 Aligned_cols=30 Identities=17% Similarity=0.119 Sum_probs=23.4
Q ss_pred CeEEEEc-CCHHHHHHHHHHHhCCCcEEEEE
Q psy5230 1 MKIIFAG-TSISAAAILDTLYNSEHNIVLIL 30 (258)
Q Consensus 1 mrI~f~G-s~~fa~~~L~~L~~~~~~i~~Vv 30 (258)
++|++.| |+..|..+.+.|+++|++++.++
T Consensus 7 ~~vlItGasg~iG~~l~~~l~~~g~~v~~~~ 37 (249)
T PRK12825 7 RVALVTGAARGLGRAIALRLARAGADVVVHY 37 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEe
Confidence 3688887 45689999999999999874433
No 195
>PLN02427 UDP-apiose/xylose synthase
Probab=61.51 E-value=36 Score=30.84 Aligned_cols=30 Identities=13% Similarity=0.334 Sum_probs=25.1
Q ss_pred CeEEEEc-CCHHHHHHHHHHHhC-CCcEEEEE
Q psy5230 1 MKIIFAG-TSISAAAILDTLYNS-EHNIVLIL 30 (258)
Q Consensus 1 mrI~f~G-s~~fa~~~L~~L~~~-~~~i~~Vv 30 (258)
|||++.| |+-.|..+.+.|+++ +++|+++.
T Consensus 15 ~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~ 46 (386)
T PLN02427 15 LTICMIGAGGFIGSHLCEKLMTETPHKVLALD 46 (386)
T ss_pred cEEEEECCcchHHHHHHHHHHhcCCCEEEEEe
Confidence 8999998 567899999999998 48887664
No 196
>PRK00073 pgk phosphoglycerate kinase; Provisional
Probab=61.44 E-value=89 Score=28.88 Aligned_cols=74 Identities=11% Similarity=0.162 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHH-HHHHCCCcEEccCCCCCCcccccchHHHHHHHhcCCCcE
Q psy5230 11 SAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKK-YALKHSIKIIQPISLKLNGKYHKIANETHKLLNKIEFDI 89 (258)
Q Consensus 11 fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~-~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dl 89 (258)
-++|+++.|+++|-.+ .+++|=.+|.|+.....-.|+.+ +.+..|.+|.-.+..-.+ +..+.++++.+-=
T Consensus 37 ~~lpTI~~l~~~gakv-vl~sH~gRP~g~~~~~SL~~va~~L~~lL~~~V~fv~d~~g~--------~~~~~i~~l~~G~ 107 (389)
T PRK00073 37 AALPTIKYLLEKGAKV-ILLSHLGRPKGEDPEFSLAPVAKRLSELLGKEVKFVDDCIGE--------EAREAIAALKDGE 107 (389)
T ss_pred HHHHHHHHHHHCCCeE-EEEEecCCCCCCCCCcCHHHHHHHHHHHhCCCeEECCCCCCH--------HHHHHHhcCCCCc
Confidence 5789999999998764 45676666665322222234444 555668887544444333 5666677766643
Q ss_pred EEEE
Q psy5230 90 MIVM 93 (258)
Q Consensus 90 ~vv~ 93 (258)
++.-
T Consensus 108 ilLL 111 (389)
T PRK00073 108 VLLL 111 (389)
T ss_pred EEEE
Confidence 3333
No 197
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=61.33 E-value=14 Score=32.93 Aligned_cols=29 Identities=17% Similarity=0.223 Sum_probs=26.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEE
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLI 29 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~V 29 (258)
|||+|+|.+..|...-..|.++||++..+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~ 31 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLI 31 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEE
Confidence 89999999999999999999999987654
No 198
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=61.22 E-value=44 Score=30.22 Aligned_cols=68 Identities=12% Similarity=0.058 Sum_probs=48.2
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHH
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKL 81 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~ 81 (258)
+|++.|-...+.-.++.....+.+++++=+.++ -.++|++.|-..+-..+ ++ +..+.
T Consensus 169 ~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~-------------K~e~a~~lGAd~~i~~~--~~--------~~~~~ 225 (339)
T COG1064 169 WVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEE-------------KLELAKKLGADHVINSS--DS--------DALEA 225 (339)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCeEEEEeCChH-------------HHHHHHHhCCcEEEEcC--Cc--------hhhHH
Confidence 688999998888888877777877766544332 26889999987765433 33 56666
Q ss_pred HhcCCCcEEEEE
Q psy5230 82 LNKIEFDIMIVM 93 (258)
Q Consensus 82 l~~~~~Dl~vv~ 93 (258)
++.. +|++++.
T Consensus 226 ~~~~-~d~ii~t 236 (339)
T COG1064 226 VKEI-ADAIIDT 236 (339)
T ss_pred hHhh-CcEEEEC
Confidence 6664 9998765
No 199
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=61.07 E-value=34 Score=30.34 Aligned_cols=27 Identities=26% Similarity=0.496 Sum_probs=22.6
Q ss_pred CeEEEEcC-CHHHHHHHHHHHhCCCcEE
Q psy5230 1 MKIIFAGT-SISAAAILDTLYNSEHNIV 27 (258)
Q Consensus 1 mrI~f~Gs-~~fa~~~L~~L~~~~~~i~ 27 (258)
|||++.|. +-.|..+.+.|+++|++++
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~~v 28 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDSV 28 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCCeE
Confidence 89999986 5688999999999887643
No 200
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=61.01 E-value=26 Score=29.04 Aligned_cols=31 Identities=13% Similarity=0.108 Sum_probs=24.8
Q ss_pred CeEEEEc-CCHHHHHHHHHHHhCCCcEEEEEc
Q psy5230 1 MKIIFAG-TSISAAAILDTLYNSEHNIVLILT 31 (258)
Q Consensus 1 mrI~f~G-s~~fa~~~L~~L~~~~~~i~~Vvt 31 (258)
++|++.| ++..|..+.+.|+++|++++.+..
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r 38 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDI 38 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 4688888 567899999999999998766544
No 201
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=60.87 E-value=27 Score=37.12 Aligned_cols=36 Identities=19% Similarity=0.190 Sum_probs=32.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCC
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLH 36 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~ 36 (258)
.||+++|.++.++++.+++.+.|+++++|.+.+|.+
T Consensus 2 ~kvLI~g~Geia~~iiraak~lGi~~v~v~sd~d~~ 37 (1201)
T TIGR02712 2 DTVLIANRGEIAVRIIRTLRRMGIRSVAVYSDADAA 37 (1201)
T ss_pred cEEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 389999999999999999999999999998877654
No 202
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=60.84 E-value=97 Score=25.78 Aligned_cols=30 Identities=13% Similarity=0.237 Sum_probs=24.7
Q ss_pred CeEEEEcC-CHHHHHHHHHHHhCCCcEEEEE
Q psy5230 1 MKIIFAGT-SISAAAILDTLYNSEHNIVLIL 30 (258)
Q Consensus 1 mrI~f~Gs-~~fa~~~L~~L~~~~~~i~~Vv 30 (258)
|+|++.|. ...|..+.+.|.+.|++++.+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~ 31 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATG 31 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEE
Confidence 89999985 5689999999999998876553
No 203
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=60.68 E-value=16 Score=28.69 Aligned_cols=45 Identities=11% Similarity=0.073 Sum_probs=28.2
Q ss_pred HHHHHhCCCcEEEEEcCCCCCCCCCC-ccCCcHHHHHHHHCCCcEEcc
Q psy5230 16 LDTLYNSEHNIVLILTKPDLHSGRGM-KLNFSPVKKYALKHSIKIIQP 62 (258)
Q Consensus 16 L~~L~~~~~~i~~Vvt~pd~~~gr~~-~~~~~~v~~~A~~~gIpv~~~ 62 (258)
+-.++.+ .++..||.-||.. |+.. ......+.+.|.++|||+++.
T Consensus 67 i~~~I~~-g~i~lVInt~dp~-~~~~~~~D~~~IRR~Av~~~IP~~T~ 112 (142)
T PRK05234 67 IGALIAE-GKIDMLIFFRDPL-TAQPHDPDVKALLRLADVWNIPVATN 112 (142)
T ss_pred HHHHHHc-CceeEEEEecCCC-CCCcccchHHHHHHHHHHcCCCEEcC
Confidence 3444444 3677777766533 4322 222337899999999999874
No 204
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=60.52 E-value=42 Score=31.52 Aligned_cols=72 Identities=14% Similarity=0.117 Sum_probs=43.4
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHH--CCCcEEccCCCCCCcccccchHHHH
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALK--HSIKIIQPISLKLNGKYHKIANETH 79 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~--~gIpv~~~~~~~~~~~~~~~~~~~~ 79 (258)
|+++++.+..+....+.|.+.|.+++.+.|.... +.....+... .+..++... +.. ++.
T Consensus 328 rv~i~~g~~~~~~l~~~l~elGmevv~~~t~~~~---------~~d~~~l~~~~~~~~~v~~~~--d~~--------e~~ 388 (456)
T TIGR01283 328 KAAIYTGGVKSWSLVSALQDLGMEVVATGTQKGT---------EEDYARIRELMGEGTVMLDDA--NPR--------ELL 388 (456)
T ss_pred EEEEEcCCchHHHHHHHHHHCCCEEEEEeeecCC---------HHHHHHHHHHcCCCeEEEeCC--CHH--------HHH
Confidence 6777777778888888888889998887764211 1111111111 233333211 112 777
Q ss_pred HHHhcCCCcEEEE
Q psy5230 80 KLLNKIEFDIMIV 92 (258)
Q Consensus 80 ~~l~~~~~Dl~vv 92 (258)
+.+++.+||+++.
T Consensus 389 ~~i~~~~pDl~ig 401 (456)
T TIGR01283 389 KLLLEYKADLLIA 401 (456)
T ss_pred HHHhhcCCCEEEE
Confidence 8888999999975
No 205
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=60.36 E-value=29 Score=32.21 Aligned_cols=31 Identities=16% Similarity=0.263 Sum_probs=25.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcC
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTK 32 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~ 32 (258)
+|+++|.+..|..+.+.|...|..-+.|+.+
T Consensus 182 ~VlViGaG~iG~~~a~~L~~~G~~~V~v~~r 212 (417)
T TIGR01035 182 KALLIGAGEMGELVAKHLLRKGVGKILIANR 212 (417)
T ss_pred EEEEECChHHHHHHHHHHHHCCCCEEEEEeC
Confidence 7999999999999999999988444445543
No 206
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=60.34 E-value=45 Score=28.89 Aligned_cols=70 Identities=21% Similarity=0.261 Sum_probs=45.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHH
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHK 80 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~ 80 (258)
|+|+++|...=|..+.+.|...+..++ +.| .+|||. +.+.+.+= +........+ ++.+
T Consensus 3 ~~ilvlGGT~Dar~la~~L~~~~~~~~-~ss----~t~~g~--------~l~~~~~~-~~~~G~l~~e--------~l~~ 60 (257)
T COG2099 3 MRILLLGGTSDARALAKKLAAAPVDII-LSS----LTGYGA--------KLAEQIGP-VRVGGFLGAE--------GLAA 60 (257)
T ss_pred ceEEEEeccHHHHHHHHHhhccCccEE-EEE----cccccc--------cchhccCC-eeecCcCCHH--------HHHH
Confidence 789999999999999999998763332 222 234543 22333332 2222233333 8889
Q ss_pred HHhcCCCcEEEE
Q psy5230 81 LLNKIEFDIMIV 92 (258)
Q Consensus 81 ~l~~~~~Dl~vv 92 (258)
+|++.+.|++|=
T Consensus 61 ~l~e~~i~llID 72 (257)
T COG2099 61 FLREEGIDLLID 72 (257)
T ss_pred HHHHcCCCEEEE
Confidence 999999999963
No 207
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=60.30 E-value=14 Score=32.42 Aligned_cols=29 Identities=21% Similarity=0.293 Sum_probs=26.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEE
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLIL 30 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vv 30 (258)
|||.|+|.+.++.+..+.|.+.++++. |+
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~-v~ 29 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVV-GY 29 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEE-EE
Confidence 899999999999999999999988874 44
No 208
>PRK05586 biotin carboxylase; Validated
Probab=60.27 E-value=13 Score=34.78 Aligned_cols=34 Identities=21% Similarity=0.226 Sum_probs=30.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCC
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDL 35 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~ 35 (258)
||+++|.++.++++++++.+.|+++++|.+.+|.
T Consensus 4 kvli~g~G~~~~~~~~aa~~lG~~~v~v~~~~d~ 37 (447)
T PRK05586 4 KILIANRGEIAVRIIRACREMGIETVAVYSEADK 37 (447)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCcEEEEcChHhc
Confidence 8999999999999999999999998888776444
No 209
>PRK07326 short chain dehydrogenase; Provisional
Probab=60.21 E-value=20 Score=29.54 Aligned_cols=29 Identities=14% Similarity=0.190 Sum_probs=23.5
Q ss_pred eEEEEc-CCHHHHHHHHHHHhCCCcEEEEE
Q psy5230 2 KIIFAG-TSISAAAILDTLYNSEHNIVLIL 30 (258)
Q Consensus 2 rI~f~G-s~~fa~~~L~~L~~~~~~i~~Vv 30 (258)
+|++.| ++.+|..+.+.|.+.|++++++.
T Consensus 8 ~ilItGatg~iG~~la~~l~~~g~~V~~~~ 37 (237)
T PRK07326 8 VALITGGSKGIGFAIAEALLAEGYKVAITA 37 (237)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEee
Confidence 578887 56799999999999888876654
No 210
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=59.91 E-value=20 Score=31.15 Aligned_cols=34 Identities=12% Similarity=0.260 Sum_probs=29.3
Q ss_pred CeEEEEc-CCHHHHHHHHHHHhC-CCcEEEEEcCCC
Q psy5230 1 MKIIFAG-TSISAAAILDTLYNS-EHNIVLILTKPD 34 (258)
Q Consensus 1 mrI~f~G-s~~fa~~~L~~L~~~-~~~i~~Vvt~pd 34 (258)
|||+++| ++.+|..+++.+.+. ++++++++.+++
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~ 37 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHG 37 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC
Confidence 7999999 799999999999875 689999987543
No 211
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=59.68 E-value=46 Score=29.68 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=13.5
Q ss_pred HHHHHHhcCCCcEEEEE
Q psy5230 77 ETHKLLNKIEFDIMIVM 93 (258)
Q Consensus 77 ~~~~~l~~~~~Dl~vv~ 93 (258)
.+..++++.+||++++.
T Consensus 75 ~l~~~l~~~~~Dii~~~ 91 (359)
T PRK09922 75 NFSKWLKETQPDIVICI 91 (359)
T ss_pred HHHHHHHhcCCCEEEEc
Confidence 56678888999988765
No 212
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=59.67 E-value=77 Score=27.89 Aligned_cols=85 Identities=12% Similarity=0.166 Sum_probs=52.3
Q ss_pred CeEEEEcCCH-HHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHH
Q psy5230 1 MKIIFAGTSI-SAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETH 79 (258)
Q Consensus 1 mrI~f~Gs~~-fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~ 79 (258)
|||+++|... .+....+.|- .+++++++-. ++ +.+ .+.. .+.
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~-~~----------------------~Di------td~~-------~v~ 43 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEFEVIATDR-AE----------------------LDI------TDPD-------AVL 43 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCceEEeccC-cc----------------------ccc------cChH-------HHH
Confidence 8999999875 5555555554 4466654321 10 222 2220 466
Q ss_pred HHHhcCCCcEEEEE----eeCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy5230 80 KLLNKIEFDIMIVM----GILPEDTSLTLQNKLEKLSKILIIDTIKK 122 (258)
Q Consensus 80 ~~l~~~~~Dl~vv~----~I~~~dt~~~L~~kl~~~g~~ll~~~l~~ 122 (258)
+.+++.+||++|-+ .++.-++-.++.-++-..|+.-+.++=..
T Consensus 44 ~~i~~~~PDvVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~ 90 (281)
T COG1091 44 EVIRETRPDVVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAE 90 (281)
T ss_pred HHHHhhCCCEEEECccccccccccCCHHHHHHhHHHHHHHHHHHHHH
Confidence 77888899999977 66666666666666666666655555444
No 213
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=59.62 E-value=53 Score=30.93 Aligned_cols=79 Identities=19% Similarity=0.209 Sum_probs=46.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCC--CcEEccCCCCCCcccccchHHH
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHS--IKIIQPISLKLNGKYHKIANET 78 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~g--Ipv~~~~~~~~~~~~~~~~~~~ 78 (258)
.|++++|.++.....-+.|.+.|.+++++++.-+.+. .....-++++....+ ..++...+. . ++
T Consensus 306 krv~i~g~~~~~~~l~~fl~elGm~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~vi~~~d~--~--------e~ 371 (454)
T cd01973 306 KKVAIFGHPDLVIGLAEFCLEVEMKPVLLLLGDDNSK----YKKDPRIKALKEKADYDMEIVTNADL--W--------EL 371 (454)
T ss_pred CeEEEEcCHHHHHHHHHHHHHCCCeEEEEEECCCCcc----cchhHHHHHHHhhcCCCceEEECCCH--H--------HH
Confidence 3788889988888888888888999887776432211 001112334433323 223222111 1 66
Q ss_pred HHHHhc--CCCcEEEEE
Q psy5230 79 HKLLNK--IEFDIMIVM 93 (258)
Q Consensus 79 ~~~l~~--~~~Dl~vv~ 93 (258)
.+.+++ .+||+++.-
T Consensus 372 ~~~i~~~~~~~dliig~ 388 (454)
T cd01973 372 EKRIKNKGLELDLILGH 388 (454)
T ss_pred HHHHHhcCCCCCEEEEC
Confidence 677776 469999865
No 214
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=59.61 E-value=42 Score=27.22 Aligned_cols=27 Identities=15% Similarity=0.086 Sum_probs=22.3
Q ss_pred CeEEEEc-CCHHHHHHHHHHHhCCCcEE
Q psy5230 1 MKIIFAG-TSISAAAILDTLYNSEHNIV 27 (258)
Q Consensus 1 mrI~f~G-s~~fa~~~L~~L~~~~~~i~ 27 (258)
++++++| ++..+..+.+.|.+.++++.
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~ 56 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVV 56 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEE
Confidence 4789998 68999999999988887654
No 215
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=59.46 E-value=18 Score=31.14 Aligned_cols=33 Identities=15% Similarity=0.342 Sum_probs=28.7
Q ss_pred CeEEEEc-CCHHHHHHHHHHHhCCCcEEEEEcCC
Q psy5230 1 MKIIFAG-TSISAAAILDTLYNSEHNIVLILTKP 33 (258)
Q Consensus 1 mrI~f~G-s~~fa~~~L~~L~~~~~~i~~Vvt~p 33 (258)
|+|+++| |+-.|..+.+.|.++||++.++-..+
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~ 34 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLR 34 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCC
Confidence 7899999 68899999999999999998887644
No 216
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=59.41 E-value=36 Score=28.99 Aligned_cols=79 Identities=16% Similarity=0.070 Sum_probs=41.9
Q ss_pred eEEEEcCC-----HHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCC-CCcccc--c
Q psy5230 2 KIIFAGTS-----ISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLK-LNGKYH--K 73 (258)
Q Consensus 2 rI~f~Gs~-----~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~-~~~~~~--~ 73 (258)
||+|+++. .+.....+.|.+.||++..+.+.+.... .....|+.++...... ....+. .
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELE-------------ELEALGVKVIPIPLDRRGINPFKDLK 67 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCccc-------------ccccCCceEEeccccccccChHhHHH
Confidence 57777554 4566677888778898865544322110 3345566655432211 000000 0
Q ss_pred chHHHHHHHhcCCCcEEEEE
Q psy5230 74 IANETHKLLNKIEFDIMIVM 93 (258)
Q Consensus 74 ~~~~~~~~l~~~~~Dl~vv~ 93 (258)
....+...++..+||++++.
T Consensus 68 ~~~~~~~~~~~~~~dvv~~~ 87 (359)
T cd03808 68 ALLRLYRLLRKERPDIVHTH 87 (359)
T ss_pred HHHHHHHHHHhcCCCEEEEc
Confidence 11144566778899988765
No 217
>PRK08177 short chain dehydrogenase; Provisional
Probab=59.14 E-value=65 Score=26.42 Aligned_cols=75 Identities=12% Similarity=0.180 Sum_probs=41.9
Q ss_pred eEEEEc-CCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHH
Q psy5230 2 KIIFAG-TSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHK 80 (258)
Q Consensus 2 rI~f~G-s~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~ 80 (258)
++++.| +..+|..+.+.|.+.|++++.+--.+++ ..+.....++.++.. ++.+.. -...+.+
T Consensus 3 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~------------~~~~~~~~~~~~~~~-D~~d~~----~~~~~~~ 65 (225)
T PRK08177 3 TALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQ------------DTALQALPGVHIEKL-DMNDPA----SLDQLLQ 65 (225)
T ss_pred EEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcc------------hHHHHhccccceEEc-CCCCHH----HHHHHHH
Confidence 466777 5568999999999999887655433221 112111224444433 343331 1114445
Q ss_pred HHhcCCCcEEEEE
Q psy5230 81 LLNKIEFDIMIVM 93 (258)
Q Consensus 81 ~l~~~~~Dl~vv~ 93 (258)
.+....+|++|..
T Consensus 66 ~~~~~~id~vi~~ 78 (225)
T PRK08177 66 RLQGQRFDLLFVN 78 (225)
T ss_pred HhhcCCCCEEEEc
Confidence 5555578988766
No 218
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=58.97 E-value=46 Score=31.24 Aligned_cols=52 Identities=13% Similarity=0.158 Sum_probs=36.7
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEc
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQ 61 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~ 61 (258)
||+++|.+..|+.+.+.|.+.|+++.. +-..+. .....+.+..+++|+.++.
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~G~~V~~-~d~~~~-------~~~~~~~~~l~~~gv~~~~ 69 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLELGARVTV-VDDGDD-------ERHRALAAILEALGATVRL 69 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEE-EeCCch-------hhhHHHHHHHHHcCCEEEE
Confidence 799999999999999999998988643 322111 1122355667788999875
No 219
>PRK07060 short chain dehydrogenase; Provisional
Probab=58.91 E-value=49 Score=27.35 Aligned_cols=72 Identities=13% Similarity=0.129 Sum_probs=42.7
Q ss_pred eEEEEcC-CHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHH
Q psy5230 2 KIIFAGT-SISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHK 80 (258)
Q Consensus 2 rI~f~Gs-~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~ 80 (258)
+++++|. +..|..+.+.|.+.|++++.+ ++.. ....+.+.+.+..++.. ++.+.. .+.+
T Consensus 11 ~~lItGa~g~iG~~~a~~l~~~g~~V~~~-~r~~-----------~~~~~~~~~~~~~~~~~-D~~~~~-------~v~~ 70 (245)
T PRK07060 11 SVLVTGASSGIGRACAVALAQRGARVVAA-ARNA-----------AALDRLAGETGCEPLRL-DVGDDA-------AIRA 70 (245)
T ss_pred EEEEeCCcchHHHHHHHHHHHCCCEEEEE-eCCH-----------HHHHHHHHHhCCeEEEe-cCCCHH-------HHHH
Confidence 6888886 579999999999999986544 3211 12455666555555443 233320 2333
Q ss_pred HHhc-CCCcEEEEE
Q psy5230 81 LLNK-IEFDIMIVM 93 (258)
Q Consensus 81 ~l~~-~~~Dl~vv~ 93 (258)
.+.. ..+|++|-.
T Consensus 71 ~~~~~~~~d~vi~~ 84 (245)
T PRK07060 71 ALAAAGAFDGLVNC 84 (245)
T ss_pred HHHHhCCCCEEEEC
Confidence 3333 247888765
No 220
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=58.48 E-value=73 Score=29.87 Aligned_cols=74 Identities=15% Similarity=0.174 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHHHhcCCCcEE
Q psy5230 11 SAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKLLNKIEFDIM 90 (258)
Q Consensus 11 fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dl~ 90 (258)
.+...-..|.+.+..+..|-+-.-+|. -...++.+|++.|+|+|....-.++ -+++.+-++..+...+|++
T Consensus 116 t~~KLA~~lkk~~~kvllVaaD~~RpA------A~eQL~~La~q~~v~~f~~~~~~~P---v~Iak~al~~ak~~~~Dvv 186 (451)
T COG0541 116 TAGKLAKYLKKKGKKVLLVAADTYRPA------AIEQLKQLAEQVGVPFFGSGTEKDP---VEIAKAALEKAKEEGYDVV 186 (451)
T ss_pred HHHHHHHHHHHcCCceEEEecccCChH------HHHHHHHHHHHcCCceecCCCCCCH---HHHHHHHHHHHHHcCCCEE
Confidence 444445566666777766665433322 1234788999999999976433332 1345566788888899999
Q ss_pred EEE
Q psy5230 91 IVM 93 (258)
Q Consensus 91 vv~ 93 (258)
+|=
T Consensus 187 IvD 189 (451)
T COG0541 187 IVD 189 (451)
T ss_pred EEe
Confidence 863
No 221
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=58.37 E-value=55 Score=31.88 Aligned_cols=57 Identities=7% Similarity=0.015 Sum_probs=39.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCC-------CccCCcHHHHHHHHCCC
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRG-------MKLNFSPVKKYALKHSI 57 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~-------~~~~~~~v~~~A~~~gI 57 (258)
+||+++|.+..+....++..+.|++++.+-..|+.+..+- .......+.++|++.++
T Consensus 23 k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dv 86 (577)
T PLN02948 23 TVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDV 86 (577)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCE
Confidence 5899999999999999999999999987766555444221 00112336677777554
No 222
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=58.33 E-value=1.2e+02 Score=26.41 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=22.1
Q ss_pred CeEEEEcC-CHHHHHHHHHHHhCCCcEEE
Q psy5230 1 MKIIFAGT-SISAAAILDTLYNSEHNIVL 28 (258)
Q Consensus 1 mrI~f~Gs-~~fa~~~L~~L~~~~~~i~~ 28 (258)
|||++.|. +-.|..+.+.|.+.| ++++
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~ 28 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-NLIA 28 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-CEEE
Confidence 89999996 678889999999887 5543
No 223
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=58.23 E-value=49 Score=28.73 Aligned_cols=73 Identities=16% Similarity=0.122 Sum_probs=44.2
Q ss_pred EcCCHHH--HHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHHHh
Q psy5230 6 AGTSISA--AAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKLLN 83 (258)
Q Consensus 6 ~Gs~~fa--~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~l~ 83 (258)
+|.+.+- +..-++|.+.|+++.-++... . ..+.+..++.|.+++..+...+ +++-+.++.+.++
T Consensus 12 iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~-~----------~~~~~~i~~~g~~v~~~~~~~~---~~~d~~~~~~~l~ 77 (279)
T TIGR03590 12 IGLGHVMRCLTLARALHAQGAEVAFACKPL-P----------GDLIDLLLSAGFPVYELPDESS---RYDDALELINLLE 77 (279)
T ss_pred ccccHHHHHHHHHHHHHHCCCEEEEEeCCC-C----------HHHHHHHHHcCCeEEEecCCCc---hhhhHHHHHHHHH
Confidence 3555433 233466767788887666532 1 2345677899999876433221 1111226888899
Q ss_pred cCCCcEEEE
Q psy5230 84 KIEFDIMIV 92 (258)
Q Consensus 84 ~~~~Dl~vv 92 (258)
+.+||++|+
T Consensus 78 ~~~~d~vV~ 86 (279)
T TIGR03590 78 EEKFDILIV 86 (279)
T ss_pred hcCCCEEEE
Confidence 999999875
No 224
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=58.15 E-value=1.3e+02 Score=26.56 Aligned_cols=31 Identities=26% Similarity=0.205 Sum_probs=25.2
Q ss_pred CeEEEEcC-CHHHHHHHHHHHhCCCc--EEEEEc
Q psy5230 1 MKIIFAGT-SISAAAILDTLYNSEHN--IVLILT 31 (258)
Q Consensus 1 mrI~f~Gs-~~fa~~~L~~L~~~~~~--i~~Vvt 31 (258)
|||+++|. +..+..+...|...++. ++++-.
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~ 34 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISR 34 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEEC
Confidence 89999996 89999999999988753 655544
No 225
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=58.06 E-value=46 Score=29.23 Aligned_cols=80 Identities=20% Similarity=0.262 Sum_probs=41.4
Q ss_pred eEEEEcCCH-----HHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccC--CCCCCccc---
Q psy5230 2 KIIFAGTSI-----SAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPI--SLKLNGKY--- 71 (258)
Q Consensus 2 rI~f~Gs~~-----fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~--~~~~~~~~--- 71 (258)
||+|.+... .+....+.|.++||++. |+|.+... .......+|++++... .......+
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~-v~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVL-FLGTKRGL-----------EARLVPKAGIPLHTIPVGGLRRKGSLKKL 68 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEE-EEECCCcc-----------hhhcccccCCceEEEEecCcCCCChHHHH
Confidence 466654442 34466788888899985 55644321 1122233567765422 11000000
Q ss_pred ------ccchHHHHHHHhcCCCcEEEEE
Q psy5230 72 ------HKIANETHKLLNKIEFDIMIVM 93 (258)
Q Consensus 72 ------~~~~~~~~~~l~~~~~Dl~vv~ 93 (258)
.+....+...+++.+||++++.
T Consensus 69 ~~~~~~~~~~~~~~~~i~~~~pDvI~~~ 96 (350)
T cd03785 69 KAPFKLLKGVLQARKILKKFKPDVVVGF 96 (350)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEEC
Confidence 0111134567888999999875
No 226
>PRK10867 signal recognition particle protein; Provisional
Probab=57.66 E-value=57 Score=30.56 Aligned_cols=82 Identities=12% Similarity=0.149 Sum_probs=43.6
Q ss_pred EEEEcCCHHHHHH-----HHHHHhC-CCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchH
Q psy5230 3 IIFAGTSISAAAI-----LDTLYNS-EHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIAN 76 (258)
Q Consensus 3 I~f~Gs~~fa~~~-----L~~L~~~-~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~ 76 (258)
|+|.|-+..|..+ -..|.+. |..+..|-+-+-++.. ...++.+|++.|+|++......++ ..+..
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa------~eQL~~~a~~~gv~v~~~~~~~dp---~~i~~ 173 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAA------IEQLKTLGEQIGVPVFPSGDGQDP---VDIAK 173 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHH------HHHHHHHHhhcCCeEEecCCCCCH---HHHHH
Confidence 5667766555444 3345555 5556444332222111 123567899999999865322222 12222
Q ss_pred HHHHHHhcCCCcEEEEE
Q psy5230 77 ETHKLLNKIEFDIMIVM 93 (258)
Q Consensus 77 ~~~~~l~~~~~Dl~vv~ 93 (258)
+.++..+...+|++|+=
T Consensus 174 ~a~~~a~~~~~DvVIID 190 (433)
T PRK10867 174 AALEEAKENGYDVVIVD 190 (433)
T ss_pred HHHHHHHhcCCCEEEEe
Confidence 34445566678988753
No 227
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=57.63 E-value=53 Score=28.21 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=21.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCC
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSE 23 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~ 23 (258)
|||+|+|.+.++..++..|.+.+
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~ 26 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSN 26 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCC
Confidence 89999999999999999999876
No 228
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=57.58 E-value=32 Score=24.60 Aligned_cols=66 Identities=15% Similarity=0.183 Sum_probs=38.5
Q ss_pred HHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHHHhcCCCcEEEE
Q psy5230 13 AAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKLLNKIEFDIMIV 92 (258)
Q Consensus 13 ~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dl~vv 92 (258)
++..+.|.+.|+++++ |. --.++-+++||++.........++.+.=.....+.+++.+.|++|.
T Consensus 3 ~~~a~~l~~lG~~i~A--T~--------------gTa~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn 66 (95)
T PF02142_consen 3 VPLAKRLAELGFEIYA--TE--------------GTAKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVIN 66 (95)
T ss_dssp HHHHHHHHHTTSEEEE--EH--------------HHHHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHCCCEEEE--Ch--------------HHHHHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEE
Confidence 4677888888988853 31 1467778999996543322111100000003889999999998877
Q ss_pred Ee
Q psy5230 93 MG 94 (258)
Q Consensus 93 ~~ 94 (258)
.+
T Consensus 67 ~~ 68 (95)
T PF02142_consen 67 TP 68 (95)
T ss_dssp E-
T ss_pred eC
Confidence 63
No 229
>COG4378 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.54 E-value=34 Score=24.71 Aligned_cols=59 Identities=17% Similarity=0.120 Sum_probs=36.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCC------------------cHHHHHHHHCCCcEEcc
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNF------------------SPVKKYALKHSIKIIQP 62 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~------------------~~v~~~A~~~gIpv~~~ 62 (258)
|.|+++|.|+.+- +=..|++.|+.-+--||.- ..+-.++..| +-++..|.+.+||+...
T Consensus 1 MSvlviGaD~lg~-I~~kL~e~GfskIeHvtgR--k~~~~kk~Ips~~dlilvLtdf~nHNl~~~iK~eakk~~ip~~~a 77 (103)
T COG4378 1 MSVLVIGADELGP-IRAKLHELGFSKIEHVTGR--KNRVNKKPIPSDTDLILVLTDFLNHNLMKKIKNEAKKRKIPLVCA 77 (103)
T ss_pred CeEEEEccccccc-HHHHHHhcChhheEEeecc--ccccccccCCCCccEEEEEhhhhcchHHHHHHHHHhhcCCCeEEe
Confidence 8899999998774 5566788786443444421 1111122222 23688899999998654
No 230
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=57.42 E-value=47 Score=30.87 Aligned_cols=78 Identities=18% Similarity=0.218 Sum_probs=48.6
Q ss_pred eEEEEcCCHHHHHHHHHHHhCC-CcEEEEEcCC-CCCCCCCCccCCcHHHHHHHHCCCc-E-----EccCCCCCCccccc
Q psy5230 2 KIIFAGTSISAAAILDTLYNSE-HNIVLILTKP-DLHSGRGMKLNFSPVKKYALKHSIK-I-----IQPISLKLNGKYHK 73 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~-~~i~~Vvt~p-d~~~gr~~~~~~~~v~~~A~~~gIp-v-----~~~~~~~~~~~~~~ 73 (258)
|++++|.+..+...++.|.+.| .+++++.+.. +.+..|. ...++ ..+.|.. . +..+..+..
T Consensus 295 ~~~i~~~~~~~~~~~~~l~elG~~~v~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----- 363 (426)
T cd01972 295 KAIVETGAAYGHLLIAVLRELGFGEVPVVLVFHHDPTYDRG-----DSEKD-LLEHGVDPEIDITKYTVSNGQYY----- 363 (426)
T ss_pred EEEEEeCCccHHHHHHHHHHcCCceEEEEEeccCchhhhcc-----hhHHH-HhcCCcccccccceeeecCCCHH-----
Confidence 7888899999999999999999 8988776621 1111111 11223 3344542 1 112111112
Q ss_pred chHHHHHHHhcCCCcEEEEE
Q psy5230 74 IANETHKLLNKIEFDIMIVM 93 (258)
Q Consensus 74 ~~~~~~~~l~~~~~Dl~vv~ 93 (258)
++.+.+++.+||+++..
T Consensus 364 ---e~~~~l~~~~pDl~i~~ 380 (426)
T cd01972 364 ---QFYNLLKRVKPDFIIFR 380 (426)
T ss_pred ---HHHHHHHHhCCCEEEEc
Confidence 78899999999999854
No 231
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=57.03 E-value=53 Score=29.33 Aligned_cols=83 Identities=17% Similarity=0.134 Sum_probs=50.5
Q ss_pred CeEE-EEcCCH---HHHHHHHHHHhC-CCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcE-E--ccCCCC-C-Ccc
Q psy5230 1 MKII-FAGTSI---SAAAILDTLYNS-EHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKI-I--QPISLK-L-NGK 70 (258)
Q Consensus 1 mrI~-f~Gs~~---fa~~~L~~L~~~-~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv-~--~~~~~~-~-~~~ 70 (258)
|||+ ++||-. +-.+++++|.+. +++...|+|... ..-+.++.+..+|+. + ....-. + ...
T Consensus 1 ~~i~~~~gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h----------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 70 (365)
T TIGR00236 1 LKVSIVLGTRPEAIKMAPLIRALKKYPEIDSYVIVTAQH----------REMLDQVLDLFHLPPDYDLNIMSPGQTLGEI 70 (365)
T ss_pred CeEEEEEecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCC----------HHHHHHHHHhcCCCCCeeeecCCCCCCHHHH
Confidence 7885 467763 455888999875 578888888421 145778887899862 1 111100 0 000
Q ss_pred cccchHHHHHHHhcCCCcEEEEE
Q psy5230 71 YHKIANETHKLLNKIEFDIMIVM 93 (258)
Q Consensus 71 ~~~~~~~~~~~l~~~~~Dl~vv~ 93 (258)
-......+.+.+++.+||++++.
T Consensus 71 ~~~~~~~l~~~l~~~~pDiv~~~ 93 (365)
T TIGR00236 71 TSNMLEGLEELLLEEKPDIVLVQ 93 (365)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEe
Confidence 00112256678899999999987
No 232
>PRK08374 homoserine dehydrogenase; Provisional
Probab=56.93 E-value=1e+02 Score=27.79 Aligned_cols=31 Identities=19% Similarity=0.224 Sum_probs=24.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhC--------C--CcEEEEEc
Q psy5230 1 MKIIFAGTSISAAAILDTLYNS--------E--HNIVLILT 31 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~--------~--~~i~~Vvt 31 (258)
|||+++|.+..+..+++.|.++ | .++++|..
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~d 43 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITD 43 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEe
Confidence 6899999999999999988773 4 45677764
No 233
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=56.38 E-value=51 Score=26.15 Aligned_cols=80 Identities=15% Similarity=0.227 Sum_probs=51.0
Q ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHC-CCcEEccCC-CCCCcccccchHHHHH
Q psy5230 3 IIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKH-SIKIIQPIS-LKLNGKYHKIANETHK 80 (258)
Q Consensus 3 I~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~-gIpv~~~~~-~~~~~~~~~~~~~~~~ 80 (258)
++|++++.....+.+.|.+.. -+.|||+. -++.....++ ++.++-+.- ++.. ...-..+...+
T Consensus 22 ~Ifld~GtT~~~la~~L~~~~--~ltVvTns------------l~ia~~l~~~~~~~vi~~GG~~~~~-~~~~~G~~a~~ 86 (161)
T PF00455_consen 22 TIFLDSGTTTLELAKYLPDKK--NLTVVTNS------------LPIANELSENPNIEVILLGGEVNPK-SLSFVGPIALE 86 (161)
T ss_pred EEEEECchHHHHHHHHhhcCC--ceEEEECC------------HHHHHHHHhcCceEEEEeCCEEEcC-CCcEECchHHH
Confidence 689999999999999887752 55789862 1344444444 777754321 1100 00012227789
Q ss_pred HHhcCCCcEEEEE--eeCC
Q psy5230 81 LLNKIEFDIMIVM--GILP 97 (258)
Q Consensus 81 ~l~~~~~Dl~vv~--~I~~ 97 (258)
.|+++.+|+.|+. .|++
T Consensus 87 ~l~~~~~d~afi~~~gi~~ 105 (161)
T PF00455_consen 87 ALRQFRFDKAFIGADGISE 105 (161)
T ss_pred HHHhhccceEEecccEecC
Confidence 9999999999877 5554
No 234
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=56.27 E-value=56 Score=25.26 Aligned_cols=101 Identities=19% Similarity=0.183 Sum_probs=56.1
Q ss_pred CeEEEEcC-CHHHHHHHHHHHhCC--CcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHH
Q psy5230 1 MKIIFAGT-SISAAAILDTLYNSE--HNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANE 77 (258)
Q Consensus 1 mrI~f~Gs-~~fa~~~L~~L~~~~--~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~ 77 (258)
|||.++|. +..|..+.-.|...+ -|++.+=..+++..| ..-++...+.-.+.++.-.. .+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g-----~a~Dl~~~~~~~~~~~~i~~--~~---------- 63 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEG-----EALDLSHASAPLPSPVRITS--GD---------- 63 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHH-----HHHHHHHHHHGSTEEEEEEE--SS----------
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCccccee-----eehhhhhhhhhccccccccc--cc----------
Confidence 89999999 999999999988876 344333222111111 11123333333333332211 11
Q ss_pred HHHHHhcCCCcEEEEE---eeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5230 78 THKLLNKIEFDIMIVM---GILPEDTSLTLQNKLEKLSKILIIDTIKKIEY 125 (258)
Q Consensus 78 ~~~~l~~~~~Dl~vv~---~I~~~dt~~~L~~kl~~~g~~ll~~~l~~l~~ 125 (258)
++.++ +.|++|+. +-.+..+-.+|. ..-++.+.+..+.+..
T Consensus 64 -~~~~~--~aDivvitag~~~~~g~sR~~ll----~~N~~i~~~~~~~i~~ 107 (141)
T PF00056_consen 64 -YEALK--DADIVVITAGVPRKPGMSRLDLL----EANAKIVKEIAKKIAK 107 (141)
T ss_dssp -GGGGT--TESEEEETTSTSSSTTSSHHHHH----HHHHHHHHHHHHHHHH
T ss_pred -ccccc--cccEEEEeccccccccccHHHHH----HHhHhHHHHHHHHHHH
Confidence 12222 57888777 666777755554 4555666666666665
No 235
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=56.15 E-value=63 Score=28.62 Aligned_cols=31 Identities=6% Similarity=0.127 Sum_probs=25.2
Q ss_pred CeEEEEcC-CHHHHHHHHHHHhCCCcEEEEEc
Q psy5230 1 MKIIFAGT-SISAAAILDTLYNSEHNIVLILT 31 (258)
Q Consensus 1 mrI~f~Gs-~~fa~~~L~~L~~~~~~i~~Vvt 31 (258)
++|++.|. +-.|..+.+.|++.|++|+++.-
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r 32 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIR 32 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEec
Confidence 57888885 56899999999999999877643
No 236
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=56.03 E-value=40 Score=31.08 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=20.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCC
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSE 23 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~ 23 (258)
|||+++|++.-...+.+.|.+.+
T Consensus 1 ~kvliiG~G~~~~~l~~~l~~~~ 23 (420)
T PRK00885 1 MKVLVIGSGGREHALAWKLAQSP 23 (420)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC
Confidence 99999999998888888998864
No 237
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=56.02 E-value=14 Score=33.73 Aligned_cols=30 Identities=13% Similarity=0.264 Sum_probs=24.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHh-CCCcEEEEE
Q psy5230 1 MKIIFAGTSISAAAILDTLYN-SEHNIVLIL 30 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~-~~~~i~~Vv 30 (258)
|||+.||-+.|+...+..+++ .|++|+.|=
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd 31 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVD 31 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEE
Confidence 999999999999977766555 578887664
No 238
>PRK12742 oxidoreductase; Provisional
Probab=55.98 E-value=1.1e+02 Score=24.98 Aligned_cols=73 Identities=16% Similarity=0.213 Sum_probs=43.2
Q ss_pred eEEEEc-CCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHH
Q psy5230 2 KIIFAG-TSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHK 80 (258)
Q Consensus 2 rI~f~G-s~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~ 80 (258)
+|++.| +...|..+.+.|.+.|++++.+... . .....+++.+.+..++..+ +.+.. .+.+
T Consensus 8 ~vlItGasggIG~~~a~~l~~~G~~v~~~~~~-~----------~~~~~~l~~~~~~~~~~~D-~~~~~-------~~~~ 68 (237)
T PRK12742 8 KVLVLGGSRGIGAAIVRRFVTDGANVRFTYAG-S----------KDAAERLAQETGATAVQTD-SADRD-------AVID 68 (237)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEecCC-C----------HHHHHHHHHHhCCeEEecC-CCCHH-------HHHH
Confidence 577887 4679999999999999887543221 1 1234555666666554332 32321 3444
Q ss_pred HHhcC-CCcEEEEE
Q psy5230 81 LLNKI-EFDIMIVM 93 (258)
Q Consensus 81 ~l~~~-~~Dl~vv~ 93 (258)
.+... .+|++|..
T Consensus 69 ~~~~~~~id~li~~ 82 (237)
T PRK12742 69 VVRKSGALDILVVN 82 (237)
T ss_pred HHHHhCCCcEEEEC
Confidence 44443 47887765
No 239
>PRK09291 short chain dehydrogenase; Provisional
Probab=55.81 E-value=43 Score=27.94 Aligned_cols=74 Identities=12% Similarity=0.152 Sum_probs=43.3
Q ss_pred eEEEEcC-CHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcE--EccCCCCCCcccccchHHH
Q psy5230 2 KIIFAGT-SISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKI--IQPISLKLNGKYHKIANET 78 (258)
Q Consensus 2 rI~f~Gs-~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv--~~~~~~~~~~~~~~~~~~~ 78 (258)
+|++.|. ..+|..+.+.|.+.|++++++.-.++. ...+.+.+.+.+..+ +.. ++.+. +.
T Consensus 4 ~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~---------~~~~~~~~~~~~~~~~~~~~-D~~~~--------~~ 65 (257)
T PRK09291 4 TILITGAGSGFGREVALRLARKGHNVIAGVQIAPQ---------VTALRAEAARRGLALRVEKL-DLTDA--------ID 65 (257)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHH---------HHHHHHHHHhcCCcceEEEe-eCCCH--------HH
Confidence 6788875 469999999999999888765432211 122444444555433 222 34333 33
Q ss_pred HHHHhcCCCcEEEEE
Q psy5230 79 HKLLNKIEFDIMIVM 93 (258)
Q Consensus 79 ~~~l~~~~~Dl~vv~ 93 (258)
+.......+|++|-.
T Consensus 66 ~~~~~~~~id~vi~~ 80 (257)
T PRK09291 66 RAQAAEWDVDVLLNN 80 (257)
T ss_pred HHHHhcCCCCEEEEC
Confidence 333344578988765
No 240
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=55.69 E-value=52 Score=30.46 Aligned_cols=74 Identities=12% Similarity=-0.005 Sum_probs=44.5
Q ss_pred eEEEEcCCHHHHHHHHHHH-hCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCC-CcEEccCCCCCCcccccchHHHH
Q psy5230 2 KIIFAGTSISAAAILDTLY-NSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHS-IKIIQPISLKLNGKYHKIANETH 79 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~-~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~g-Ipv~~~~~~~~~~~~~~~~~~~~ 79 (258)
||+++|.+.......+.|. +.|.+++++.|.... ....++..++.. .+++. ...++. ++.
T Consensus 290 ~vai~~~~~~~~~la~~l~~elG~~v~~i~~~~~~---------~~~~~~~~~~~~~~~~~v-~d~~~~--------e~~ 351 (415)
T cd01977 290 KVCIWTGGPKLWHWTKVIEDELGMQVVAMSSKFGH---------QEDFEKVIARGGEGTIYI-DDPNEL--------EFF 351 (415)
T ss_pred EEEEECCCchHHHHHHHHHHhcCCEEEEEEEEecc---------HHHHHHHHHhcCCceEEE-eCCCHH--------HHH
Confidence 6788887777777778886 689999887663211 011233333322 23332 222222 666
Q ss_pred HHHhcCCCcEEEEE
Q psy5230 80 KLLNKIEFDIMIVM 93 (258)
Q Consensus 80 ~~l~~~~~Dl~vv~ 93 (258)
+.+++.+||++|.-
T Consensus 352 ~~~~~~~pdliig~ 365 (415)
T cd01977 352 EILEMLKPDIILTG 365 (415)
T ss_pred HHHHhcCCCEEEec
Confidence 77888899998754
No 241
>PRK07206 hypothetical protein; Provisional
Probab=55.43 E-value=28 Score=31.93 Aligned_cols=34 Identities=9% Similarity=0.057 Sum_probs=29.4
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCC
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDL 35 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~ 35 (258)
+++++|+...+..+.+++.+.|++++.|.+.++.
T Consensus 4 ~~liv~~~~~~~~~~~a~~~~G~~~v~v~~~~~~ 37 (416)
T PRK07206 4 KVVIVDPFSSGKFLAPAFKKRGIEPIAVTSSCLL 37 (416)
T ss_pred eEEEEcCCchHHHHHHHHHHcCCeEEEEEcCCCC
Confidence 5899999999999999999999999888876543
No 242
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=55.41 E-value=85 Score=27.01 Aligned_cols=87 Identities=14% Similarity=0.152 Sum_probs=56.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEE-EEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCC-CCCcccccchHHH
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIV-LILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISL-KLNGKYHKIANET 78 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~-~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~-~~~~~~~~~~~~~ 78 (258)
|+|++||...=|..+.+.|.+.|+.++ .|.|. .|. ....+++++ ...+ +.. ++
T Consensus 3 ~~IlvlgGT~egr~la~~L~~~g~~v~~Svat~----~g~------------~~~~~~~v~-~G~l~~~~--------~l 57 (248)
T PRK08057 3 PRILLLGGTSEARALARALAAAGVDIVLSLAGR----TGG------------PADLPGPVR-VGGFGGAE--------GL 57 (248)
T ss_pred ceEEEEechHHHHHHHHHHHhCCCeEEEEEccC----CCC------------cccCCceEE-ECCCCCHH--------HH
Confidence 689999888899999999998887654 44442 110 223466665 3345 333 88
Q ss_pred HHHHhcCCCcEEEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy5230 79 HKLLNKIEFDIMIVMGILPEDTSLTLQNKLEKLSKIL 115 (258)
Q Consensus 79 ~~~l~~~~~Dl~vv~~I~~~dt~~~L~~kl~~~g~~l 115 (258)
.+++++.+++++|=+ -+-.+..+.+...+++.++
T Consensus 58 ~~~l~~~~i~~VIDA---THPfA~~is~~a~~ac~~~ 91 (248)
T PRK08057 58 AAYLREEGIDLVIDA---THPYAAQISANAAAACRAL 91 (248)
T ss_pred HHHHHHCCCCEEEEC---CCccHHHHHHHHHHHHHHh
Confidence 899999999998643 2334555555555555543
No 243
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=55.35 E-value=18 Score=33.62 Aligned_cols=32 Identities=6% Similarity=0.060 Sum_probs=28.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcC
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTK 32 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~ 32 (258)
|||.|+|.+..|.+.-..|.+.||++.++=..
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~ 35 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDIN 35 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCC
Confidence 78999999999999999999999998766443
No 244
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=55.17 E-value=1.1e+02 Score=27.20 Aligned_cols=23 Identities=13% Similarity=0.107 Sum_probs=20.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCC
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSE 23 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~ 23 (258)
|||+++|.+..|..+.-.|...+
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~ 26 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKG 26 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC
Confidence 69999999999999988887766
No 245
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=55.03 E-value=35 Score=36.06 Aligned_cols=62 Identities=23% Similarity=0.263 Sum_probs=46.6
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCC------------CCCC--c-----cCCcHHHHHHHHCCCcEEcc
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHS------------GRGM--K-----LNFSPVKKYALKHSIKIIQP 62 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~------------gr~~--~-----~~~~~v~~~A~~~gIpv~~~ 62 (258)
||++...++.++++++++.+.|+++++|.+.+|... |++. . +....+.++|+++++..+.|
T Consensus 1 ~~lianrgeia~ri~ra~~elGi~tVav~s~~D~~s~~~~~ADe~y~v~~~~d~~~~~~Yldid~Ii~iak~~~iDaI~P 80 (1143)
T TIGR01235 1 KILVANRGEIAIRVFRAANELGIRTVAIYSEEDKLSLHRQKADESYQVGEGPDLGPIEAYLSIDEIIRVAKLNGVDAIHP 80 (1143)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEEECcccccCcchhhcCEEEEcCCccccCcccccCCHHHHHHHHHHhCCCEEEE
Confidence 689999999999999999999999999999888633 2220 0 11234677888888877665
Q ss_pred C
Q psy5230 63 I 63 (258)
Q Consensus 63 ~ 63 (258)
-
T Consensus 81 G 81 (1143)
T TIGR01235 81 G 81 (1143)
T ss_pred C
Confidence 3
No 246
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=54.83 E-value=1.4e+02 Score=26.33 Aligned_cols=31 Identities=10% Similarity=0.143 Sum_probs=25.4
Q ss_pred CeEEEEcC-CHHHHHHHHHHHhCCCcEEEEEc
Q psy5230 1 MKIIFAGT-SISAAAILDTLYNSEHNIVLILT 31 (258)
Q Consensus 1 mrI~f~Gs-~~fa~~~L~~L~~~~~~i~~Vvt 31 (258)
|+|++.|. +-.|..+.+.|.+.|++++++.-
T Consensus 7 ~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r 38 (340)
T PLN02653 7 KVALITGITGQDGSYLTEFLLSKGYEVHGIIR 38 (340)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEEec
Confidence 57888885 56899999999999999876643
No 247
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=54.73 E-value=21 Score=31.65 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=27.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcC
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTK 32 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~ 32 (258)
|||.++|.+.+|...-..|.++|++|. ++.+
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~-l~~r 31 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVN-LWGR 31 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEE-EEec
Confidence 899999999999999999999998885 5553
No 248
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=54.56 E-value=47 Score=31.10 Aligned_cols=82 Identities=24% Similarity=0.216 Sum_probs=43.0
Q ss_pred EEEEcCCHHHHHHH-----HHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHH
Q psy5230 3 IIFAGTSISAAAIL-----DTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANE 77 (258)
Q Consensus 3 I~f~Gs~~fa~~~L-----~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~ 77 (258)
|+|+|-+..|..++ ..|.+.|+.+..|-+-+-++.. ..-++.+|++.++|++....-.++. .++.+
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA------~eQLk~~a~~~~vp~~~~~~~~dp~---~i~~~ 173 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGA------FDQLKQNATKARIPFYGSYTESDPV---KIASE 173 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhH------HHHHHHHhhccCCeEEeecCCCCHH---HHHHH
Confidence 66777665555433 2233446666444332222211 1124668999999998543222210 11223
Q ss_pred HHHHHhcCCCcEEEEE
Q psy5230 78 THKLLNKIEFDIMIVM 93 (258)
Q Consensus 78 ~~~~l~~~~~Dl~vv~ 93 (258)
-++.+++..+|++|+=
T Consensus 174 ~l~~~~~~~~DvViID 189 (429)
T TIGR01425 174 GVEKFKKENFDIIIVD 189 (429)
T ss_pred HHHHHHhCCCCEEEEE
Confidence 4455666688988753
No 249
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=54.54 E-value=53 Score=30.61 Aligned_cols=32 Identities=9% Similarity=0.110 Sum_probs=21.1
Q ss_pred CeEEEEcCC----------HHHHHHHHHHHhCCCcEEEEEcC
Q psy5230 1 MKIIFAGTS----------ISAAAILDTLYNSEHNIVLILTK 32 (258)
Q Consensus 1 mrI~f~Gs~----------~fa~~~L~~L~~~~~~i~~Vvt~ 32 (258)
|||++|..+ ..-....+.|.+.||++..+.+.
T Consensus 59 mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~ 100 (465)
T PLN02871 59 RRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTD 100 (465)
T ss_pred ceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 899988432 23445667788889998555443
No 250
>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated. Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre
Probab=54.45 E-value=38 Score=31.64 Aligned_cols=30 Identities=33% Similarity=0.390 Sum_probs=23.5
Q ss_pred eEEEEcCCHHHHHHHHHHHh-C---CCcEEEEEcC
Q psy5230 2 KIIFAGTSISAAAILDTLYN-S---EHNIVLILTK 32 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~-~---~~~i~~Vvt~ 32 (258)
|++++|+++-+..+ ..+.+ + |+++++++..
T Consensus 126 rvLIIGag~~~~~L-~~l~~~~~~~g~~vVGfi~~ 159 (442)
T TIGR03013 126 RILVLGTGPRAREI-ARLRRSSDRRGHEIVGFVPL 159 (442)
T ss_pred cEEEEECCHHHHHH-HHHHHhCccCCeEEEEEEcC
Confidence 68999999999888 66653 2 5789999964
No 251
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=54.40 E-value=66 Score=29.20 Aligned_cols=73 Identities=16% Similarity=0.162 Sum_probs=44.8
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHH--HHHCCCcEEccCCCCCCcccccchHHHH
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKY--ALKHSIKIIQPISLKLNGKYHKIANETH 79 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~--A~~~gIpv~~~~~~~~~~~~~~~~~~~~ 79 (258)
|++++|.+..+....+.|.+.|.+++.+++.-..+. .-.+. ....+-.++.... .. +..
T Consensus 281 ~~~i~~~~~~~~~~~~~l~e~G~~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~d--~~--------~~~ 341 (399)
T cd00316 281 KVAIFGDGDLLLALARFLLELGMEVVAAGTTFGHKA---------DYERREELLGEGTEVVDDGD--LE--------ELE 341 (399)
T ss_pred EEEEECCCcHHHHHHHHHHHCCCEEEEEEeCCCCHH---------HHHHHHHhcCCCCEEEeCCC--HH--------HHH
Confidence 678888888888888889898999988887422111 00111 1111212222111 11 777
Q ss_pred HHHhcCCCcEEEEE
Q psy5230 80 KLLNKIEFDIMIVM 93 (258)
Q Consensus 80 ~~l~~~~~Dl~vv~ 93 (258)
+.+++..||+++..
T Consensus 342 ~~~~~~~pdl~ig~ 355 (399)
T cd00316 342 ELIRELKPDLIIGG 355 (399)
T ss_pred HHHhhcCCCEEEEC
Confidence 88889999999765
No 252
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=54.20 E-value=21 Score=31.42 Aligned_cols=31 Identities=13% Similarity=0.158 Sum_probs=23.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCC--CcEEEEEcC
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSE--HNIVLILTK 32 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~--~~i~~Vvt~ 32 (258)
|||++.|.+.-. .+++.|.+++ ++++++=+.
T Consensus 2 ~~vLv~g~~~~~-~~~~~l~~~~~g~~vi~~d~~ 34 (326)
T PRK12767 2 MNILVTSAGRRV-QLVKALKKSLLKGRVIGADIS 34 (326)
T ss_pred ceEEEecCCccH-HHHHHHHHhccCCEEEEECCC
Confidence 899999987655 7788888884 777655443
No 253
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=54.11 E-value=30 Score=25.88 Aligned_cols=33 Identities=15% Similarity=0.336 Sum_probs=27.7
Q ss_pred eEEEEc-CCHHHHHHHHHHHhCC-CcEEEEEcCCC
Q psy5230 2 KIIFAG-TSISAAAILDTLYNSE-HNIVLILTKPD 34 (258)
Q Consensus 2 rI~f~G-s~~fa~~~L~~L~~~~-~~i~~Vvt~pd 34 (258)
||+++| |+..|..+++.|.+.. ++++.++....
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~ 35 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR 35 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc
Confidence 799999 9999999999998863 67888887643
No 254
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=53.95 E-value=21 Score=31.12 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=24.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEE
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIV 27 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~ 27 (258)
|||.|+|.+..+......|.+.|+++.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~ 29 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLV 29 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEE
Confidence 799999999999999999999888874
No 255
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=52.45 E-value=22 Score=33.16 Aligned_cols=30 Identities=17% Similarity=0.461 Sum_probs=25.9
Q ss_pred CeEEEEcC-CHHHHHHHHHHHhCCCcEEEEE
Q psy5230 1 MKIIFAGT-SISAAAILDTLYNSEHNIVLIL 30 (258)
Q Consensus 1 mrI~f~Gs-~~fa~~~L~~L~~~~~~i~~Vv 30 (258)
|||++.|. +-.|..+.+.|++.|++|+++-
T Consensus 121 mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ld 151 (436)
T PLN02166 121 LRIVVTGGAGFVGSHLVDKLIGRGDEVIVID 151 (436)
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCEEEEEe
Confidence 89999985 5689999999999999987764
No 256
>PLN00203 glutamyl-tRNA reductase
Probab=52.35 E-value=66 Score=30.93 Aligned_cols=31 Identities=6% Similarity=0.296 Sum_probs=26.0
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcC
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTK 32 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~ 32 (258)
+|+++|++..|..+++.|...|+.-+.|+.+
T Consensus 268 kVlVIGAG~mG~~~a~~L~~~G~~~V~V~nR 298 (519)
T PLN00203 268 RVLVIGAGKMGKLLVKHLVSKGCTKMVVVNR 298 (519)
T ss_pred EEEEEeCHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 7999999999999999999988755555543
No 257
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=52.19 E-value=1.6e+02 Score=25.52 Aligned_cols=32 Identities=9% Similarity=0.137 Sum_probs=26.6
Q ss_pred CeEEEEc-CCHHHHHHHHHHHhCCCcEEEEEcC
Q psy5230 1 MKIIFAG-TSISAAAILDTLYNSEHNIVLILTK 32 (258)
Q Consensus 1 mrI~f~G-s~~fa~~~L~~L~~~~~~i~~Vvt~ 32 (258)
++|++.| ++-.|..+.+.|+++|+++++++..
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~ 37 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRGYTVKATVRD 37 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCCCEEEEEEcC
Confidence 5899999 5678999999999999998776543
No 258
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=52.08 E-value=1.4e+02 Score=26.31 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=24.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCC--CcEEEE
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSE--HNIVLI 29 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~--~~i~~V 29 (258)
+||+++|++..|..+...|...+ ++++.+
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~ 31 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLI 31 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEE
Confidence 58999999999999999999887 355443
No 259
>PRK08291 ectoine utilization protein EutC; Validated
Probab=52.05 E-value=75 Score=28.37 Aligned_cols=32 Identities=16% Similarity=0.115 Sum_probs=25.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHh-CCCcEEEEEcC
Q psy5230 1 MKIIFAGTSISAAAILDTLYN-SEHNIVLILTK 32 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~-~~~~i~~Vvt~ 32 (258)
.+++++|++..|...+.+|.. .+.+.+.|+.+
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R 165 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWAR 165 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 478999999999999999986 35677777754
No 260
>PLN02282 phosphoglycerate kinase
Probab=51.97 E-value=1.5e+02 Score=27.55 Aligned_cols=69 Identities=12% Similarity=0.184 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHH-HHHHHHCCCcEEccCCCCCCcccccchHHHHHHHhcCCCc
Q psy5230 11 SAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPV-KKYALKHSIKIIQPISLKLNGKYHKIANETHKLLNKIEFD 88 (258)
Q Consensus 11 fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v-~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~l~~~~~D 88 (258)
-++|+++.|+++|..+ .+++|=.+|.|+..+..-.|+ +.+.+..|.+|.-.+..-.+ +..+.++++.+-
T Consensus 44 a~lpTI~~l~~~gakv-Vl~SHlGRP~g~~~~~SL~~va~~Ls~lL~~~V~fv~d~~g~--------~~~~~i~~l~~G 113 (401)
T PLN02282 44 AAVPTIKYLMGHGARV-ILCSHLGRPKGVTPKYSLKPLVPRLSELLGVEVVMANDCIGE--------EVEKLVAELPEG 113 (401)
T ss_pred HHHHHHHHHHHCCCeE-EEEecCCCCCCCCcccCHHHHHHHHHHHHCCCeEECCCCCCH--------HHHHHHhcCCCC
Confidence 5789999999998765 456766666653222222344 34566678888654444444 556666666553
No 261
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=51.92 E-value=22 Score=32.66 Aligned_cols=31 Identities=23% Similarity=0.223 Sum_probs=25.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcC
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTK 32 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~ 32 (258)
|||.++|.+-.|.++-..| ..||+++++=..
T Consensus 1 mkI~VIGlGyvGl~~A~~l-A~G~~VigvD~d 31 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLI-AQNHEVVALDIL 31 (388)
T ss_pred CEEEEECCCHHHHHHHHHH-HhCCcEEEEECC
Confidence 8999999999999988555 458998777544
No 262
>PLN02240 UDP-glucose 4-epimerase
Probab=51.58 E-value=1.7e+02 Score=25.73 Aligned_cols=30 Identities=17% Similarity=0.174 Sum_probs=24.5
Q ss_pred CeEEEEcC-CHHHHHHHHHHHhCCCcEEEEE
Q psy5230 1 MKIIFAGT-SISAAAILDTLYNSEHNIVLIL 30 (258)
Q Consensus 1 mrI~f~Gs-~~fa~~~L~~L~~~~~~i~~Vv 30 (258)
++|++.|. +-.|..+.+.|.++|++|+++.
T Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g~~V~~~~ 36 (352)
T PLN02240 6 RTILVTGGAGYIGSHTVLQLLLAGYKVVVID 36 (352)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 47889974 6789999999999999876653
No 263
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=51.49 E-value=78 Score=29.86 Aligned_cols=74 Identities=14% Similarity=-0.004 Sum_probs=42.8
Q ss_pred eEEEEcCCHHHHHHHHHHH-hCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCC-CcEEccCCCCCCcccccchHHHH
Q psy5230 2 KIIFAGTSISAAAILDTLY-NSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHS-IKIIQPISLKLNGKYHKIANETH 79 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~-~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~g-Ipv~~~~~~~~~~~~~~~~~~~~ 79 (258)
|++++|.+..+......|. +.|.+++++.|.-. ......+...... -.++ ....++- ++.
T Consensus 329 rvaI~~~~~~~~~~~~~l~~ElGmevv~~~~~~~---------~~~~~~~~~~~~~~~~i~-i~d~~~~--------e~~ 390 (461)
T TIGR01860 329 KMCIWTGGPRLWHWTKALEDDLGMQVVAMSSKFG---------HQEDFEKVIARGKEGTIY-IDDGNEL--------EFF 390 (461)
T ss_pred EEEEECCCchHHHHHHHHHHhCCCEEEEEeeecC---------CHHHHHHHHHhcCCCeEE-EeCCCHH--------HHH
Confidence 6778877777777778888 58999888765311 0112333222111 1121 1122222 666
Q ss_pred HHHhcCCCcEEEEE
Q psy5230 80 KLLNKIEFDIMIVM 93 (258)
Q Consensus 80 ~~l~~~~~Dl~vv~ 93 (258)
+.+++.+||++|.-
T Consensus 391 ~~~~~~~pDliig~ 404 (461)
T TIGR01860 391 EVLDLIKPDVIFTG 404 (461)
T ss_pred HHHHhcCCCEEEeC
Confidence 77888999998764
No 264
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=51.31 E-value=41 Score=29.41 Aligned_cols=72 Identities=19% Similarity=0.332 Sum_probs=47.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhC-CCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEc-cCCCCCCcccccchHHHH
Q psy5230 2 KIIFAGTSISAAAILDTLYNS-EHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQ-PISLKLNGKYHKIANETH 79 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~-~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~-~~~~~~~~~~~~~~~~~~ 79 (258)
+++++.+...|.-+|+.|.+. .+-+++|+ |.- .|..+......|=|+- +..+++. .+.
T Consensus 69 k~lVIACNTASa~al~~LR~~~~iPVvGvi--Pai----------k~A~~~t~~~~IgViaT~~Tvks~--------~y~ 128 (269)
T COG0796 69 KALVIACNTASAVALEDLREKFDIPVVGVI--PAI----------KPAVALTRNGRIGVIATPATVKSN--------AYR 128 (269)
T ss_pred CEEEEecchHHHHHHHHHHHhCCCCEEEec--cch----------HHHHHhccCCeEEEEeccchhccH--------HHH
Confidence 567777778888888888876 46788888 321 1222222233355654 4456665 777
Q ss_pred HHHhcCCCcEEEEE
Q psy5230 80 KLLNKIEFDIMIVM 93 (258)
Q Consensus 80 ~~l~~~~~Dl~vv~ 93 (258)
+.++++++|+.|-.
T Consensus 129 ~~i~~~~~~~~V~~ 142 (269)
T COG0796 129 DLIARFAPDCEVES 142 (269)
T ss_pred HHHHHhCCCCEEEE
Confidence 88888999988765
No 265
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=51.27 E-value=87 Score=27.53 Aligned_cols=70 Identities=20% Similarity=0.225 Sum_probs=45.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhC----CC-------cE-----EEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCC
Q psy5230 2 KIIFAGTSISAAAILDTLYNS----EH-------NI-----VLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISL 65 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~----~~-------~i-----~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~ 65 (258)
||+|+|.+..++.+.+.|++. |. ++ -++++. +|.. ....-+.||+..+- ..
T Consensus 27 ~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~-----~r~~--l~~~~~~~a~~~~~-----~~- 93 (279)
T cd05312 27 RILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTK-----DRKD--LTPFKKPFARKDEE-----KE- 93 (279)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeC-----CCCc--chHHHHHHHhhcCc-----cc-
Confidence 899999999999998888775 53 23 244442 2221 22334567776432 01
Q ss_pred CCCcccccchHHHHHHHhcCCCcEEEEE
Q psy5230 66 KLNGKYHKIANETHKLLNKIEFDIMIVM 93 (258)
Q Consensus 66 ~~~~~~~~~~~~~~~~l~~~~~Dl~vv~ 93 (258)
.. .+.+.++..+||++|=+
T Consensus 94 -~~--------~L~e~i~~v~ptvlIG~ 112 (279)
T cd05312 94 -GK--------SLLEVVKAVKPTVLIGL 112 (279)
T ss_pred -CC--------CHHHHHHhcCCCEEEEe
Confidence 12 67788888999999865
No 266
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=51.13 E-value=40 Score=28.41 Aligned_cols=29 Identities=14% Similarity=0.233 Sum_probs=24.2
Q ss_pred CeEEEEcCC-HHHHHHHHHHHhCCCcEEEE
Q psy5230 1 MKIIFAGTS-ISAAAILDTLYNSEHNIVLI 29 (258)
Q Consensus 1 mrI~f~Gs~-~fa~~~L~~L~~~~~~i~~V 29 (258)
|++++.|.. .++..+.+.|.+.|++++.+
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~ 30 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVIS 30 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEE
Confidence 899999865 59999999999999886443
No 267
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=51.02 E-value=80 Score=27.17 Aligned_cols=28 Identities=25% Similarity=0.498 Sum_probs=22.8
Q ss_pred eEEEEc-CCHHHHHHHHHHHhCCCcEEEE
Q psy5230 2 KIIFAG-TSISAAAILDTLYNSEHNIVLI 29 (258)
Q Consensus 2 rI~f~G-s~~fa~~~L~~L~~~~~~i~~V 29 (258)
||+++| ++..|..+.+.|+++|++++++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~ 29 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHEVVVL 29 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCeEEEE
Confidence 577776 6789999999999999887644
No 268
>PRK06182 short chain dehydrogenase; Validated
Probab=50.18 E-value=63 Score=27.40 Aligned_cols=29 Identities=14% Similarity=-0.008 Sum_probs=23.3
Q ss_pred eEEEEcC-CHHHHHHHHHHHhCCCcEEEEE
Q psy5230 2 KIIFAGT-SISAAAILDTLYNSEHNIVLIL 30 (258)
Q Consensus 2 rI~f~Gs-~~fa~~~L~~L~~~~~~i~~Vv 30 (258)
+|++.|. +..|..+.+.|.+.|++++++.
T Consensus 5 ~vlItGasggiG~~la~~l~~~G~~V~~~~ 34 (273)
T PRK06182 5 VALVTGASSGIGKATARRLAAQGYTVYGAA 34 (273)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 5777885 5799999999999999886553
No 269
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=50.18 E-value=61 Score=30.26 Aligned_cols=55 Identities=13% Similarity=0.007 Sum_probs=37.7
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEc
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQ 61 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~ 61 (258)
||+++|.+..|+.+-..|...|.+ +.++...+... ........+.+++.||+++.
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~~G~~-Vtlv~~~~~~~----~~~~~~~~~~l~~~GV~~~~ 328 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALRLGAE-VHCLYRRTRED----MTARVEEIAHAEEEGVKFHF 328 (449)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCE-EEEEeecCccc----CCCCHHHHHHHHhCCCEEEe
Confidence 789999999999999999998888 45665432211 00111233567888999864
No 270
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=49.97 E-value=52 Score=29.63 Aligned_cols=31 Identities=26% Similarity=0.437 Sum_probs=25.9
Q ss_pred CeEEEEc-CCHHHHHHHHHHHhC-CCcEEEEEc
Q psy5230 1 MKIIFAG-TSISAAAILDTLYNS-EHNIVLILT 31 (258)
Q Consensus 1 mrI~f~G-s~~fa~~~L~~L~~~-~~~i~~Vvt 31 (258)
|||+++| |+-.|...++.|.+. ++++++|+.
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~ 35 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTS 35 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEEC
Confidence 7999999 578899999999876 478888876
No 271
>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.91 E-value=25 Score=29.03 Aligned_cols=54 Identities=24% Similarity=0.354 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccC
Q psy5230 10 ISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPI 63 (258)
Q Consensus 10 ~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~ 63 (258)
.-+..+|+.|.+.|.++..-+-.|.-.-----.++...++++|+++||+++..+
T Consensus 14 Pcs~y~le~l~~~~~~i~~yFYNPNIhP~~EY~~R~~e~~~f~~~~~i~~iegd 67 (204)
T COG1636 14 PCSGYVLEKLRDSGIKITIYFYNPNIHPLSEYELRKEEVKRFAEKFGINFIEGD 67 (204)
T ss_pred CCcHHHHHHHHhcCcceEEEEeCCCCCchHHHHHHHHHHHHHHHHcCCeeeecC
Confidence 467789999999999998888766432100001233468899999999998754
No 272
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=49.87 E-value=26 Score=31.69 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=26.6
Q ss_pred CeEEEEcC-CHHHHHHHHHHHhCCCcEEEEEc
Q psy5230 1 MKIIFAGT-SISAAAILDTLYNSEHNIVLILT 31 (258)
Q Consensus 1 mrI~f~Gs-~~fa~~~L~~L~~~~~~i~~Vvt 31 (258)
|||+++|. +-.|..+.+.|.+.||+|.++.-
T Consensus 22 ~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 22 LRICITGAGGFIASHIARRLKAEGHYIIASDW 53 (370)
T ss_pred CEEEEECCccHHHHHHHHHHHhCCCEEEEEEe
Confidence 89999986 67899999999999999877653
No 273
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=49.39 E-value=1e+02 Score=25.42 Aligned_cols=69 Identities=10% Similarity=0.111 Sum_probs=39.9
Q ss_pred CcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHHHhcC--CCcEEEEEeeCCCCCH
Q psy5230 24 HNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKLLNKI--EFDIMIVMGILPEDTS 101 (258)
Q Consensus 24 ~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~l~~~--~~Dl~vv~~I~~~dt~ 101 (258)
-+++-+++.. |+. ..-....++|+++|+|++--....+. .+.++ ..|+.|.+|-....-.
T Consensus 110 gDvli~iS~S----G~s--~~v~~a~~~Ak~~G~~vI~IT~~~~s------------~l~~l~~~~D~~i~ip~~~~~~v 171 (196)
T PRK10886 110 GDVLLAISTR----GNS--RDIVKAVEAAVTRDMTIVALTGYDGG------------ELAGLLGPQDVEIRIPSHRSARI 171 (196)
T ss_pred CCEEEEEeCC----CCC--HHHHHHHHHHHHCCCEEEEEeCCCCC------------hhhhccccCCEEEEcCCCchHHH
Confidence 4777777753 322 12234678999999999765443322 23344 4799988876544333
Q ss_pred HHHHHHHHH
Q psy5230 102 LTLQNKLEK 110 (258)
Q Consensus 102 ~~L~~kl~~ 110 (258)
.+++.-+.+
T Consensus 172 ~e~h~~i~H 180 (196)
T PRK10886 172 QEMHMLTVN 180 (196)
T ss_pred HHHHHHHHH
Confidence 333333333
No 274
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=49.25 E-value=52 Score=31.86 Aligned_cols=38 Identities=16% Similarity=0.234 Sum_probs=30.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhCC-CcEEEEEcCCCCCCCC
Q psy5230 2 KIIFAGTSISAAAILDTLYNSE-HNIVLILTKPDLHSGR 39 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~-~~i~~Vvt~pd~~~gr 39 (258)
|++++|.++-|...++++...+ +.+++++-..+...|+
T Consensus 118 r~lIiGAG~ag~~l~r~~~~~~~~~pV~fiDdd~~~~g~ 156 (588)
T COG1086 118 RLLIIGAGSAGDLLLRALRRDPEYTPVAFLDDDPDLTGM 156 (588)
T ss_pred ceEEEcCchHHHHHHHHHHhCCCcceEEEECCChhhcCC
Confidence 6899999999999999999864 7888998754444443
No 275
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=49.24 E-value=1.6e+02 Score=24.71 Aligned_cols=31 Identities=6% Similarity=0.140 Sum_probs=28.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEc
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILT 31 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt 31 (258)
+||++.|.+.+|..+.+.|.+.|..+++|.-
T Consensus 24 ~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD 54 (217)
T cd05211 24 LTVAVQGLGNVGWGLAKKLAEEGGKVLAVSD 54 (217)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEc
Confidence 6899999999999999999999888888764
No 276
>PRK10537 voltage-gated potassium channel; Provisional
Probab=49.19 E-value=91 Score=28.79 Aligned_cols=68 Identities=16% Similarity=0.111 Sum_probs=42.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHH
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKL 81 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~ 81 (258)
.++++|.+.++..+.+.|.+++++++.|. +|+ .+...+.|.+++.-+. .++ +.++.
T Consensus 242 HvII~G~g~lg~~v~~~L~~~g~~vvVId--~d~-------------~~~~~~~g~~vI~GD~-td~--------e~L~~ 297 (393)
T PRK10537 242 HFIICGHSPLAINTYLGLRQRGQAVTVIV--PLG-------------LEHRLPDDADLIPGDS-SDS--------AVLKK 297 (393)
T ss_pred eEEEECCChHHHHHHHHHHHCCCCEEEEE--Cch-------------hhhhccCCCcEEEeCC-CCH--------HHHHh
Confidence 38899999999999999998887775443 221 1223345667665433 233 55555
Q ss_pred HhcCCCcEEEEE
Q psy5230 82 LNKIEFDIMIVM 93 (258)
Q Consensus 82 l~~~~~Dl~vv~ 93 (258)
..-.+++.+++.
T Consensus 298 AgI~~A~aVI~~ 309 (393)
T PRK10537 298 AGAARARAILAL 309 (393)
T ss_pred cCcccCCEEEEc
Confidence 444566665543
No 277
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=49.15 E-value=81 Score=28.60 Aligned_cols=37 Identities=11% Similarity=0.063 Sum_probs=29.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCC
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHS 37 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~ 37 (258)
++|+++|.+..+.....+..+.|++++.+-..|+.+.
T Consensus 3 ~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa 39 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPA 39 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCch
Confidence 4699999999999999999898999866644444443
No 278
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=48.96 E-value=25 Score=29.50 Aligned_cols=47 Identities=19% Similarity=0.138 Sum_probs=33.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCc
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIK 58 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIp 58 (258)
|+|+++|+++.+...-..|.+.||+++ +-++ . .+...+..++..+..
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~-igs~-r---------~~~~~~a~a~~l~~~ 48 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVI-IGSS-R---------GPKALAAAAAALGPL 48 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEE-EecC-C---------ChhHHHHHHHhhccc
Confidence 789999999999999999999999984 2221 1 123456666666654
No 279
>PRK08507 prephenate dehydrogenase; Validated
Probab=48.94 E-value=30 Score=29.92 Aligned_cols=25 Identities=20% Similarity=0.120 Sum_probs=22.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCc
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHN 25 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~ 25 (258)
|||+|+|.+.+|......|.+.|+.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~ 25 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLI 25 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCC
Confidence 8999999999999999999988863
No 280
>KOG0029|consensus
Probab=48.87 E-value=61 Score=31.00 Aligned_cols=60 Identities=17% Similarity=0.287 Sum_probs=47.8
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCC------------------ccCCcHHHHHHHHCCCcEEcc
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGM------------------KLNFSPVKKYALKHSIKIIQP 62 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~------------------~~~~~~v~~~A~~~gIpv~~~ 62 (258)
+|+++|.+-.|+.+-+.|++.|+++ .|+=.-|+.-||=. ....+|+..++++.|++.++.
T Consensus 17 ~VIVIGAGiaGLsAArqL~~~G~~V-~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~~npl~~l~~qlgl~~~~~ 94 (501)
T KOG0029|consen 17 KVIVIGAGLAGLSAARQLQDFGFDV-LVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVYNNPLALLSKQLGLELYKV 94 (501)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCce-EEEeccCCcCceeEEEecCCCCeeecCCceecCcCccHHHHHHHHhCccccee
Confidence 7999999999999999999999995 56655677777711 113358999999999998764
No 281
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=48.83 E-value=30 Score=30.05 Aligned_cols=23 Identities=35% Similarity=0.336 Sum_probs=21.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCC
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSE 23 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~ 23 (258)
|||.|+|.+.+|......|.+.+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g 24 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETE 24 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCC
Confidence 68999999999999999999886
No 282
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=48.73 E-value=50 Score=28.99 Aligned_cols=24 Identities=4% Similarity=0.164 Sum_probs=21.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCC
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEH 24 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~ 24 (258)
|||+|+|.+.+|......|.+.|+
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~ 30 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGL 30 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCC
Confidence 589999999999999999988875
No 283
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=48.62 E-value=57 Score=23.35 Aligned_cols=18 Identities=50% Similarity=0.346 Sum_probs=15.0
Q ss_pred HHHHHHHHCCCcEEccCC
Q psy5230 47 PVKKYALKHSIKIIQPIS 64 (258)
Q Consensus 47 ~v~~~A~~~gIpv~~~~~ 64 (258)
.+++.|.++|+|++...+
T Consensus 66 ~vk~~akk~~ip~~~~~~ 83 (97)
T PF10087_consen 66 KVKKAAKKYGIPIIYSRS 83 (97)
T ss_pred HHHHHHHHcCCcEEEECC
Confidence 489999999999987653
No 284
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=48.60 E-value=35 Score=23.72 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=19.8
Q ss_pred CcEEEEEeeCCcEEEEecCcEEEEEEEe
Q psy5230 205 PGTILNVNFHNGILVVCGKNVIKLLELQ 232 (258)
Q Consensus 205 pG~i~~~~~~~~l~V~c~dg~l~i~~lq 232 (258)
.|+|...-++..+.|.|-||......+.
T Consensus 10 ~g~V~e~L~~~~f~v~~edg~~~~ahI~ 37 (75)
T COG0361 10 EGTVIEMLPNGRFRVELENGHERLAHIS 37 (75)
T ss_pred EEEEEEecCCCEEEEEecCCcEEEEEcc
Confidence 4667665556777888888877776665
No 285
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=48.36 E-value=73 Score=29.83 Aligned_cols=81 Identities=15% Similarity=0.130 Sum_probs=43.0
Q ss_pred EEEEcCCHHHHHHH-----HHHH-hCCCcEEEEEcC-CCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccch
Q psy5230 3 IIFAGTSISAAAIL-----DTLY-NSEHNIVLILTK-PDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIA 75 (258)
Q Consensus 3 I~f~Gs~~fa~~~L-----~~L~-~~~~~i~~Vvt~-pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~ 75 (258)
|+|.|.+..|..++ ..|. +.|..+ ++|+. +-++. ....++.+|.+.|+|++......++. .++
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~~~~g~kV-~lV~~D~~R~~------a~~QL~~~a~~~gvp~~~~~~~~~P~---~i~ 171 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLKKKQGKKV-LLVACDLYRPA------AIEQLKVLGQQVGVPVFALGKGQSPV---EIA 171 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhCCCeE-EEEeccccchH------HHHHHHHHHHhcCCceEecCCCCCHH---HHH
Confidence 56667665554433 4444 345555 44442 22211 11236778999999998754322220 122
Q ss_pred HHHHHHHhcCCCcEEEEE
Q psy5230 76 NETHKLLNKIEFDIMIVM 93 (258)
Q Consensus 76 ~~~~~~l~~~~~Dl~vv~ 93 (258)
.+.++.+....+|++|+=
T Consensus 172 ~~al~~~~~~~~DvVIID 189 (428)
T TIGR00959 172 RRALEYAKENGFDVVIVD 189 (428)
T ss_pred HHHHHHHHhcCCCEEEEe
Confidence 244455666778988653
No 286
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=48.32 E-value=33 Score=29.54 Aligned_cols=88 Identities=9% Similarity=0.133 Sum_probs=53.7
Q ss_pred HHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHHHhcCCCcEEEEE-eeCC
Q psy5230 19 LYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKLLNKIEFDIMIVM-GILP 97 (258)
Q Consensus 19 L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dl~vv~-~I~~ 97 (258)
..+.|-.-+.|.|-|.--.| ....+........+|++.-+-+-++ .-+..-+...+|.++.+ .+.+
T Consensus 70 y~~~GA~aISVlTe~~~F~G-----s~~~l~~v~~~v~~PvL~KDFIid~--------~QI~ea~~~GADavLLI~~~L~ 136 (247)
T PRK13957 70 YETLGASAISVLTDQSYFGG-----SLEDLKSVSSELKIPVLRKDFILDE--------IQIREARAFGASAILLIVRILT 136 (247)
T ss_pred HHHCCCcEEEEEcCCCcCCC-----CHHHHHHHHHhcCCCEEeccccCCH--------HHHHHHHHcCCCEEEeEHhhCC
Confidence 33445555566665433222 2345666666667787765544443 22333444778877655 6766
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q psy5230 98 EDTSLTLQNKLEKLSKILIIDT 119 (258)
Q Consensus 98 ~dt~~~L~~kl~~~g~~ll~~~ 119 (258)
.+...+|++....+|.+.|+++
T Consensus 137 ~~~l~~l~~~a~~lGle~LVEV 158 (247)
T PRK13957 137 PSQIKSFLKHASSLGMDVLVEV 158 (247)
T ss_pred HHHHHHHHHHHHHcCCceEEEE
Confidence 7788888888888888877653
No 287
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=48.09 E-value=1e+02 Score=23.36 Aligned_cols=50 Identities=26% Similarity=0.212 Sum_probs=30.2
Q ss_pred EEEEcCC-----HHHHHHHHHHHhC----CCcEEEEEcC--CCCCCCCCCccCCcHHHHHHHHCCCcE
Q psy5230 3 IIFAGTS-----ISAAAILDTLYNS----EHNIVLILTK--PDLHSGRGMKLNFSPVKKYALKHSIKI 59 (258)
Q Consensus 3 I~f~Gs~-----~fa~~~L~~L~~~----~~~i~~Vvt~--pd~~~gr~~~~~~~~v~~~A~~~gIpv 59 (258)
|+|..+. .+|-.+++.+++. ++++..--+. |.. .....+.+.+.++||+.
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~~~~-------~~~~~a~~~l~~~gid~ 61 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTEAWPGE-------PVDPRAIAVLKEHGIDI 61 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESSSTTTS-------SSTHHHHHHHHHTTSSC
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeecccccc-------cccchHHHHHHHhCCCc
Confidence 6777666 4778888888542 3444333333 221 12345677788999986
No 288
>PRK12827 short chain dehydrogenase; Provisional
Probab=48.03 E-value=1.2e+02 Score=24.97 Aligned_cols=30 Identities=13% Similarity=0.215 Sum_probs=24.1
Q ss_pred CeEEEEcC-CHHHHHHHHHHHhCCCcEEEEE
Q psy5230 1 MKIIFAGT-SISAAAILDTLYNSEHNIVLIL 30 (258)
Q Consensus 1 mrI~f~Gs-~~fa~~~L~~L~~~~~~i~~Vv 30 (258)
|+|++.|. ...|..+.+.|.++|++++.+.
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~g~~v~~~~ 37 (249)
T PRK12827 7 RRVLITGGSGGLGRAIAVRLAADGADVIVLD 37 (249)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEc
Confidence 57888884 5688999999999999876554
No 289
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=47.93 E-value=1.1e+02 Score=28.35 Aligned_cols=32 Identities=9% Similarity=-0.047 Sum_probs=26.6
Q ss_pred eEEEEcCCHHHHHHHHHHH-hCCCcEEEEEcCC
Q psy5230 2 KIIFAGTSISAAAILDTLY-NSEHNIVLILTKP 33 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~-~~~~~i~~Vvt~p 33 (258)
|++++|.++.+...-+.|. +.|.+++++++..
T Consensus 295 ~vai~~~~~~~~~l~~~L~~elGm~~~~~~~~~ 327 (427)
T cd01971 295 RFAVIADSTYALGLARFLVNELGWVPAKQVITD 327 (427)
T ss_pred eEEEECChHHHHHHHHHHHHhcCCceEEEEecC
Confidence 6888999999999988886 7799988887753
No 290
>PRK05693 short chain dehydrogenase; Provisional
Probab=47.93 E-value=68 Score=27.24 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=22.1
Q ss_pred Ce-EEEEc-CCHHHHHHHHHHHhCCCcEEEE
Q psy5230 1 MK-IIFAG-TSISAAAILDTLYNSEHNIVLI 29 (258)
Q Consensus 1 mr-I~f~G-s~~fa~~~L~~L~~~~~~i~~V 29 (258)
|| +++.| +..+|..+.+.|.+.|++++.+
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G~~V~~~ 31 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGYEVWAT 31 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCCEEEEE
Confidence 44 55666 4579999999999999887654
No 291
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=47.89 E-value=97 Score=29.25 Aligned_cols=31 Identities=16% Similarity=0.275 Sum_probs=25.6
Q ss_pred eEEEEcC-CHHHHHHHHHHHhC--CCcEEEEEcC
Q psy5230 2 KIIFAGT-SISAAAILDTLYNS--EHNIVLILTK 32 (258)
Q Consensus 2 rI~f~Gs-~~fa~~~L~~L~~~--~~~i~~Vvt~ 32 (258)
||+++|+ ++.|..+|+-+.+. +++++++...
T Consensus 59 kI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag 92 (454)
T PLN02696 59 PISLLGSTGSIGTQTLDIVAENPDKFKVVALAAG 92 (454)
T ss_pred EEEEecCCcHhhHHHHHHHHhCccccEEEEEECC
Confidence 8999999 89999999988775 3778887664
No 292
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=47.83 E-value=1.2e+02 Score=29.94 Aligned_cols=83 Identities=16% Similarity=0.157 Sum_probs=49.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCC---C---CccCCcH---HHHHHHHCCCcEEccCCCCCCccc
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGR---G---MKLNFSP---VKKYALKHSIKIIQPISLKLNGKY 71 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr---~---~~~~~~~---v~~~A~~~gIpv~~~~~~~~~~~~ 71 (258)
.||+++|++..|+.+...|...|+++ .|+-..+...|. + .++..+- -.+++++.|+.+..-......
T Consensus 328 ~~VaIIGaGpAGLsaA~~L~~~G~~V-~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~--- 403 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLARNGVAV-TVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKD--- 403 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeE-EEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCc---
Confidence 48999999999999999999999885 566544433321 0 0111111 235677889887543222111
Q ss_pred ccchHHHHHHHhcCCCcEEEEE
Q psy5230 72 HKIANETHKLLNKIEFDIMIVM 93 (258)
Q Consensus 72 ~~~~~~~~~~l~~~~~Dl~vv~ 93 (258)
-.++.+. ..+|.+|++
T Consensus 404 -----i~~~~~~-~~~DavilA 419 (654)
T PRK12769 404 -----ISLESLL-EDYDAVFVG 419 (654)
T ss_pred -----CCHHHHH-hcCCEEEEe
Confidence 0112222 368988887
No 293
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=47.68 E-value=1.3e+02 Score=27.51 Aligned_cols=84 Identities=17% Similarity=0.067 Sum_probs=47.5
Q ss_pred EEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHHHh
Q psy5230 4 IFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKLLN 83 (258)
Q Consensus 4 ~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~l~ 83 (258)
++||.+.... +-+.+.+.|..-+.|||.+.-.. .-....+.+..++.|+.+........+..+ ....+..+..+
T Consensus 12 i~~G~g~~~~-l~~~~~~~g~~~~livt~~~~~~----~g~~~~v~~~L~~~~i~~~~f~~v~~np~~-~~v~~~~~~~~ 85 (383)
T PRK09860 12 NVIGADSLTD-AMNMMADYGFTRTLIVTDNMLTK----LGMAGDVQKALEERNIFSVIYDGTQPNPTT-ENVAAGLKLLK 85 (383)
T ss_pred EEECcCHHHH-HHHHHHhcCCCEEEEEcCcchhh----CccHHHHHHHHHHcCCeEEEeCCCCCCcCH-HHHHHHHHHHH
Confidence 5678774433 33344444667777888531100 112235777778899987554443211001 11225567788
Q ss_pred cCCCcEEEEE
Q psy5230 84 KIEFDIMIVM 93 (258)
Q Consensus 84 ~~~~Dl~vv~ 93 (258)
+.++|.+|.+
T Consensus 86 ~~~~D~Iiai 95 (383)
T PRK09860 86 ENNCDSVISL 95 (383)
T ss_pred HcCCCEEEEe
Confidence 8999999877
No 294
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=47.55 E-value=31 Score=30.40 Aligned_cols=29 Identities=14% Similarity=0.161 Sum_probs=25.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEE
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLI 29 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~V 29 (258)
|+|+|+|.+.+|...-..|.++|+++..+
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~ 31 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLW 31 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEE
Confidence 68999999999999999999999887544
No 295
>PRK12831 putative oxidoreductase; Provisional
Probab=47.51 E-value=64 Score=30.31 Aligned_cols=54 Identities=15% Similarity=0.039 Sum_probs=36.9
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCc-HHHHHHHHCCCcEEc
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFS-PVKKYALKHSIKIIQ 61 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~-~v~~~A~~~gIpv~~ 61 (258)
||+++|.+..|+.+-..|...|.+ |.++...+.. .+... .-.+.+++.||+++.
T Consensus 283 ~VvVIGgG~va~d~A~~l~r~Ga~-Vtlv~r~~~~-----~m~a~~~e~~~a~~eGV~i~~ 337 (464)
T PRK12831 283 KVAVVGGGNVAMDAARTALRLGAE-VHIVYRRSEE-----ELPARVEEVHHAKEEGVIFDL 337 (464)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCE-EEEEeecCcc-----cCCCCHHHHHHHHHcCCEEEe
Confidence 799999999999999999998888 5566542211 11111 112357889999864
No 296
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=47.38 E-value=56 Score=30.24 Aligned_cols=59 Identities=10% Similarity=0.062 Sum_probs=39.4
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEc
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQ 61 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~ 61 (258)
||+++|.+..+++.-..|.+.|.++ .++...+...++-.......+.+..+++||.++.
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~~g~~V-tli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~~ 217 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNKLGSKV-TVLDAASTILPREEPSVAALAKQYMEEDGITFLL 217 (438)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeE-EEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEc
Confidence 7899999999999999998888876 5666544433321111112245566788999864
No 297
>PF00162 PGK: Phosphoglycerate kinase; InterPro: IPR001576 Phosphoglycerate kinase (2.7.2.3 from EC) (PGK) is an enzyme that catalyses the formation of ATP to ADP and vice versa. In the second step of the second phase in glycolysis, 1,3-diphosphoglycerate is converted to 3-phosphoglycerate, forming one molecule of ATP. If the reverse were to occur, one molecule of ADP would be formed. This reaction is essential in most cells for the generation of ATP in aerobes, for fermentation in anaerobes and for carbon fixation in plants. PGK is found in all living organisms and its sequence has been highly conserved throughout evolution. The enzyme exists as a monomer containing two nearly equal-sized domains that correspond to the N- and C-termini of the protein (the last 15 C-terminal residues loop back into the N-terminal domain). 3-phosphoglycerate (3-PG) binds to the N-terminal, while the nucleotide substrates, MgATP or MgADP, bind to the C-terminal domain of the enzyme. This extended two-domain structure is associated with large-scale 'hinge-bending' conformational changes, similar to those found in hexokinase []. At the core of each domain is a 6-stranded parallel beta-sheet surrounded by alpha helices. Domain 1 has a parallel beta-sheet of six strands with an order of 342156, while domain 2 has a parallel beta-sheet of six strands with an order of 321456. Analysis of the reversible unfolding of yeast phosphoglycerate kinase leads to the conclusion that the two lobes are capable of folding independently, consistent with the presence of intermediates on the folding pathway with a single domain folded []. Phosphoglycerate kinase (PGK) deficiency is associated with haemolytic anaemia and mental disorders in man []. This group represents a phosphoglycerate kinase.; GO: 0004618 phosphoglycerate kinase activity, 0006096 glycolysis; PDB: 1PHP_A 1V6S_A 2IE8_A 1ZMR_A 16PK_A 13PK_B 2P9Q_A 2P9T_A 2PAA_B 3OZA_A ....
Probab=47.31 E-value=1.2e+02 Score=28.01 Aligned_cols=75 Identities=9% Similarity=0.104 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhCCCcEEEEEcCCCCCCC-CC-CccCCcHH-HHHHHHCCCcEEccCCCCCCcccccchHHHHHHHhcCC
Q psy5230 10 ISAAAILDTLYNSEHNIVLILTKPDLHSG-RG-MKLNFSPV-KKYALKHSIKIIQPISLKLNGKYHKIANETHKLLNKIE 86 (258)
Q Consensus 10 ~fa~~~L~~L~~~~~~i~~Vvt~pd~~~g-r~-~~~~~~~v-~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~l~~~~ 86 (258)
.-++++++.|+++|.. +-+++|-.+|.| .. ....-.|+ ..+.+..|.+|.-.+..-.+ +..+.+.+++
T Consensus 34 ~~~lpTI~~l~~~gak-vVl~sH~GRPk~~~~~~~~SL~~va~~L~~~L~~~V~f~~d~~g~--------~~~~~i~~l~ 104 (384)
T PF00162_consen 34 RAALPTIKYLLEKGAK-VVLMSHLGRPKGKGYDDFFSLEPVAERLSKLLGKPVKFVDDCIGE--------EAEEAIESLK 104 (384)
T ss_dssp HHHHHHHHHHHHTTEE-EEEE---SSTTTSSSTGGG-SHHHHHHHHHHHTSEEEEESTSSSH--------HHHHHHHTSS
T ss_pred HHHHHHHHHHHhcCCe-EEEEeccCCcccCCCCcccChHHHHHHHHHHhCCCeeeccccCCH--------HHHHHHhccC
Confidence 3578999999999866 467777777764 21 12222344 44566678888655544344 6667788877
Q ss_pred CcEEEEE
Q psy5230 87 FDIMIVM 93 (258)
Q Consensus 87 ~Dl~vv~ 93 (258)
+-=++..
T Consensus 105 ~G~IllL 111 (384)
T PF00162_consen 105 PGEILLL 111 (384)
T ss_dssp TTEEEEE
T ss_pred CCCEEEE
Confidence 7655555
No 298
>PRK07102 short chain dehydrogenase; Provisional
Probab=47.30 E-value=1.6e+02 Score=24.25 Aligned_cols=30 Identities=27% Similarity=0.190 Sum_probs=23.8
Q ss_pred CeEEEEc-CCHHHHHHHHHHHhCCCcEEEEE
Q psy5230 1 MKIIFAG-TSISAAAILDTLYNSEHNIVLIL 30 (258)
Q Consensus 1 mrI~f~G-s~~fa~~~L~~L~~~~~~i~~Vv 30 (258)
|+|++.| ++..+..+.+.|.++|++++.+.
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~ 32 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGARLYLAA 32 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEe
Confidence 4678887 56789999999999998876553
No 299
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=47.16 E-value=65 Score=24.24 Aligned_cols=46 Identities=13% Similarity=0.055 Sum_probs=31.7
Q ss_pred HHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccC
Q psy5230 12 AAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPI 63 (258)
Q Consensus 12 a~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~ 63 (258)
-...++.|.+.|.. +++.. .||.....|..+.++|.++++|++..+
T Consensus 61 ~~~~i~~L~~~~~a--gL~i~----~~~~~~~iP~~~i~~A~~~~lPli~ip 106 (123)
T PF07905_consen 61 LREFIRELAEKGAA--GLGIK----TGRYLDEIPEEIIELADELGLPLIEIP 106 (123)
T ss_pred HHHHHHHHHHCCCe--EEEEe----ccCccccCCHHHHHHHHHcCCCEEEeC
Confidence 56777888876543 44432 233334567889999999999998754
No 300
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=47.11 E-value=79 Score=28.30 Aligned_cols=73 Identities=18% Similarity=0.293 Sum_probs=44.5
Q ss_pred CeEEEEcCC-HHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHH
Q psy5230 1 MKIIFAGTS-ISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETH 79 (258)
Q Consensus 1 mrI~f~Gs~-~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~ 79 (258)
|+|++.|-- -.+..+..+|+++|++++.+ |..+ .| ....|.... .++++- ++.|.. -+.
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~----DNL~-~g---~~~~v~~~~----~~f~~g-Di~D~~-------~L~ 60 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVL----DNLS-NG---HKIALLKLQ----FKFYEG-DLLDRA-------LLT 60 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCeEEEE----ecCC-CC---CHHHhhhcc----CceEEe-ccccHH-------HHH
Confidence 889988654 58999999999999998544 2111 01 111122111 566554 455541 344
Q ss_pred HHHhcCCCcEEEEE
Q psy5230 80 KLLNKIEFDIMIVM 93 (258)
Q Consensus 80 ~~l~~~~~Dl~vv~ 93 (258)
+.+.+.++|.++=+
T Consensus 61 ~vf~~~~idaViHF 74 (329)
T COG1087 61 AVFEENKIDAVVHF 74 (329)
T ss_pred HHHHhcCCCEEEEC
Confidence 56788899988765
No 301
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=46.98 E-value=78 Score=26.26 Aligned_cols=30 Identities=17% Similarity=0.091 Sum_probs=24.3
Q ss_pred eEEEEc-CCHHHHHHHHHHHhCCCcEEEEEc
Q psy5230 2 KIIFAG-TSISAAAILDTLYNSEHNIVLILT 31 (258)
Q Consensus 2 rI~f~G-s~~fa~~~L~~L~~~~~~i~~Vvt 31 (258)
+|++.| +...+..+.+.|++.|++++.+..
T Consensus 6 ~vlItG~sg~iG~~la~~l~~~g~~v~~~~r 36 (258)
T PRK12429 6 VALVTGAASGIGLEIALALAKEGAKVVIADL 36 (258)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEEEeC
Confidence 478887 677999999999999998866533
No 302
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=46.83 E-value=33 Score=27.41 Aligned_cols=64 Identities=23% Similarity=0.298 Sum_probs=30.8
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHH
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKL 81 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~ 81 (258)
||+.+|.+.-|...|..+--.+-.|..||=..+...||- .| -.+||++.|+.+.+
T Consensus 70 ~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np~K~G~~-----~P------Gt~ipI~~p~~l~~-------------- 124 (160)
T PF08484_consen 70 RIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNPLKQGKY-----LP------GTHIPIVSPEELKE-------------- 124 (160)
T ss_dssp -EEEE---SHHHHHHHHHT--TTTS--EEES-GGGTTEE------T------TT--EEEEGGG--S--------------
T ss_pred EEEEECcchHHHHHHHHhCCCcceeEEEEeCChhhcCcc-----cC------CCCCeECCHHHHhh--------------
Confidence 689999999999888776222223556665434445542 11 23589988876543
Q ss_pred HhcCCCcEEEEE
Q psy5230 82 LNKIEFDIMIVM 93 (258)
Q Consensus 82 l~~~~~Dl~vv~ 93 (258)
..||++++.
T Consensus 125 ---~~pd~vivl 133 (160)
T PF08484_consen 125 ---RKPDYVIVL 133 (160)
T ss_dssp ---S--SEEEES
T ss_pred ---CCCCEEEEc
Confidence 368888775
No 303
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=46.82 E-value=86 Score=29.34 Aligned_cols=64 Identities=13% Similarity=0.065 Sum_probs=38.3
Q ss_pred HHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHHHh-cCCCcEEE
Q psy5230 15 ILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKLLN-KIEFDIMI 91 (258)
Q Consensus 15 ~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~l~-~~~~Dl~v 91 (258)
.++.|.+.|-++...-+.|-. ...++...-.+.|||||.......+ +|+ ..++..- ..+||+++
T Consensus 64 l~~~L~~~GA~v~~~~~np~S--------tqd~vaaaL~~~gi~v~a~~~~~~~-ey~----~~~~~~l~~~~p~iii 128 (425)
T PRK05476 64 LIETLKALGAEVRWASCNPFS--------TQDDVAAALAAAGIPVFAWKGETLE-EYW----ECIERALDGHGPNMIL 128 (425)
T ss_pred HHHHHHHcCCEEEEEeCCCcc--------cCHHHHHHHHHCCceEEecCCCCHH-HHH----HHHHHHhcCCCCCEEE
Confidence 445666667776555544432 3356777777889999987554333 232 3333333 66899884
No 304
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=46.66 E-value=76 Score=31.28 Aligned_cols=31 Identities=6% Similarity=0.196 Sum_probs=25.7
Q ss_pred CeEEEEc-CCHHHHHHHHHHHhC-CCcEEEEEc
Q psy5230 1 MKIIFAG-TSISAAAILDTLYNS-EHNIVLILT 31 (258)
Q Consensus 1 mrI~f~G-s~~fa~~~L~~L~~~-~~~i~~Vvt 31 (258)
|||++.| |+-.|..+.+.|++. |++|+++.-
T Consensus 316 ~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r 348 (660)
T PRK08125 316 TRVLILGVNGFIGNHLTERLLRDDNYEVYGLDI 348 (660)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCcEEEEEeC
Confidence 7899999 567899999999985 699987753
No 305
>PRK08309 short chain dehydrogenase; Provisional
Probab=46.66 E-value=38 Score=27.40 Aligned_cols=29 Identities=14% Similarity=0.132 Sum_probs=24.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEE
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLI 29 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~V 29 (258)
|+++++|...|+..+.+.|.+.|+++..+
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~G~~V~v~ 29 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEKGFHVSVI 29 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHCcCEEEEE
Confidence 89999998889999999999999887543
No 306
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=46.59 E-value=1.3e+02 Score=27.12 Aligned_cols=84 Identities=15% Similarity=0.116 Sum_probs=47.2
Q ss_pred EEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHHHh
Q psy5230 4 IFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKLLN 83 (258)
Q Consensus 4 ~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~l~ 83 (258)
++||.+.. ..+-+.|.+.+.+-+.|||.+.... ......+.....++|+.+...........+ ....+..+.++
T Consensus 4 i~~G~g~l-~~l~~~l~~~~~~~~lvv~~~~~~~----~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~-~~v~~~~~~~~ 77 (370)
T cd08551 4 IIFGAGAI-EKLGEEIKNLGGRKALIVTDPGLVK----TGVLDKVIDSLKEAGIEVVIFDGVEPNPTL-SNVDAAVAAYR 77 (370)
T ss_pred EEECcCHH-HHHHHHHHHcCCCeEEEEeCcchhh----CccHHHHHHHHHHcCCeEEEECCCCCCCCH-HHHHHHHHHHH
Confidence 57788754 2344444444656677888643221 011234667777888877544433211111 11225667778
Q ss_pred cCCCcEEEEE
Q psy5230 84 KIEFDIMIVM 93 (258)
Q Consensus 84 ~~~~Dl~vv~ 93 (258)
+.++|.+|.+
T Consensus 78 ~~~~d~Iiai 87 (370)
T cd08551 78 EEGCDGVIAV 87 (370)
T ss_pred hcCCCEEEEe
Confidence 8899998877
No 307
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=46.47 E-value=1e+02 Score=28.81 Aligned_cols=74 Identities=9% Similarity=-0.042 Sum_probs=41.5
Q ss_pred eEEEEcCCHHHHHHHH-HHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHC-CCcEEccCCCCCCcccccchHHHH
Q psy5230 2 KIIFAGTSISAAAILD-TLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKH-SIKIIQPISLKLNGKYHKIANETH 79 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~-~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~-gIpv~~~~~~~~~~~~~~~~~~~~ 79 (258)
|+++++.++......+ .+.+.|.+++++.+.-.. ...+....... .-+++ ....+.. ++.
T Consensus 319 rvai~~~~~~~~~~~~~ll~elGm~v~~~~~~~~~---------~~~~~~~l~~l~~~~~~-v~~~~~~--------e~~ 380 (443)
T TIGR01862 319 RVCLYIGGSRLWHWIGSAEEDLGMEVVAVGYEFAH---------EDDYEKTMKRMGEGTLL-IDDPNEL--------EFE 380 (443)
T ss_pred eEEEECCchhHHHHHHHHHHHCCCEEEEecccccc---------HHHHHHHHHhCCCceEE-ecCCCHH--------HHH
Confidence 6777776666666666 566778998888663211 01122222221 11333 2222222 666
Q ss_pred HHHhcCCCcEEEEE
Q psy5230 80 KLLNKIEFDIMIVM 93 (258)
Q Consensus 80 ~~l~~~~~Dl~vv~ 93 (258)
+.+++.+||++|.-
T Consensus 381 ~~i~~~~pdllig~ 394 (443)
T TIGR01862 381 EILEKLKPDIIFSG 394 (443)
T ss_pred HHHHhcCCCEEEEc
Confidence 77888899988754
No 308
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=46.34 E-value=1.5e+02 Score=25.72 Aligned_cols=31 Identities=13% Similarity=0.105 Sum_probs=24.8
Q ss_pred CeEEEEc-CCHHHHHHHHHHHhCCCcEEEEEc
Q psy5230 1 MKIIFAG-TSISAAAILDTLYNSEHNIVLILT 31 (258)
Q Consensus 1 mrI~f~G-s~~fa~~~L~~L~~~~~~i~~Vvt 31 (258)
++|++.| ++-.|..+.+.|++.|+++++++-
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r 37 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLLLRGYTVKATVR 37 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence 3788888 567899999999999998866553
No 309
>PRK06141 ornithine cyclodeaminase; Validated
Probab=46.33 E-value=1.1e+02 Score=27.10 Aligned_cols=31 Identities=13% Similarity=0.131 Sum_probs=24.2
Q ss_pred eEEEEcCCHHHHHHHHHHHh-CCCcEEEEEcC
Q psy5230 2 KIIFAGTSISAAAILDTLYN-SEHNIVLILTK 32 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~-~~~~i~~Vvt~ 32 (258)
+|+|+|++..|...+++++. .+.+-+.|+.+
T Consensus 127 ~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~R 158 (314)
T PRK06141 127 RLLVVGTGRLASLLALAHASVRPIKQVRVWGR 158 (314)
T ss_pred eEEEECCcHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 68999999999999998776 45555566653
No 310
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=46.24 E-value=22 Score=27.12 Aligned_cols=54 Identities=20% Similarity=0.244 Sum_probs=29.4
Q ss_pred eEEEEcCCHHHH----------HHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCC
Q psy5230 2 KIIFAGTSISAA----------AILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPIS 64 (258)
Q Consensus 2 rI~f~Gs~~fa~----------~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~ 64 (258)
||-++|..+++- ..++.|.+. .-.+.|+|.- . ..+..+.+.|.++++|++..+.
T Consensus 50 RIQiiG~~E~~yl~~l~~~~r~~~l~~l~~~-~~P~iIvt~~-------~-~~p~~l~e~a~~~~ipll~t~~ 113 (127)
T PF02603_consen 50 RIQIIGNTESAYLNSLDEEERKERLEKLFSY-NPPCIIVTRG-------L-EPPPELIELAEKYNIPLLRTPL 113 (127)
T ss_dssp SEEEE-HHHHHHHCCS-HHHHCCHHHHHCTT-T-S-EEEETT-------T----HHHHHHHHHCT--EEEESS
T ss_pred eEEEEcHHHHHHHHHCCHHHHHHHHHHHhCC-CCCEEEEECc-------C-CCCHHHHHHHHHhCCcEEEcCC
Confidence 577788877654 234444432 2245566642 1 2345789999999999998654
No 311
>PRK06953 short chain dehydrogenase; Provisional
Probab=46.17 E-value=1.1e+02 Score=24.95 Aligned_cols=28 Identities=4% Similarity=0.152 Sum_probs=22.1
Q ss_pred eEEEEc-CCHHHHHHHHHHHhCCCcEEEE
Q psy5230 2 KIIFAG-TSISAAAILDTLYNSEHNIVLI 29 (258)
Q Consensus 2 rI~f~G-s~~fa~~~L~~L~~~~~~i~~V 29 (258)
++++.| +...+..+.+.|.+.|++++.+
T Consensus 3 ~vlvtG~sg~iG~~la~~L~~~G~~v~~~ 31 (222)
T PRK06953 3 TVLIVGASRGIGREFVRQYRADGWRVIAT 31 (222)
T ss_pred eEEEEcCCCchhHHHHHHHHhCCCEEEEE
Confidence 556666 6679999999999989887655
No 312
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=46.14 E-value=39 Score=31.99 Aligned_cols=30 Identities=10% Similarity=0.155 Sum_probs=25.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEc
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILT 31 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt 31 (258)
++|.|+|.+.+|...-..|.++||++. |+.
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~-v~d 31 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKIS-VYN 31 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEE-EEe
Confidence 479999999999999999999999764 444
No 313
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=45.90 E-value=33 Score=30.10 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=24.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEE
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIV 27 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~ 27 (258)
+||.|+|.+.++.+....|.+.|+++.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~ 28 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQ 28 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEE
Confidence 389999999999999999999998763
No 314
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=45.87 E-value=1.6e+02 Score=26.78 Aligned_cols=84 Identities=15% Similarity=0.101 Sum_probs=48.0
Q ss_pred EEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHHHh
Q psy5230 4 IFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKLLN 83 (258)
Q Consensus 4 ~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~l~ 83 (258)
++||.+... .+-+.|.+.|.+-+.|||.+.-.. .-....+.+..++.|+.+...+........ ....+..+.++
T Consensus 10 i~fG~g~l~-~l~~~l~~~g~~r~lvvt~~~~~~----~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~-~~v~~~~~~~~ 83 (379)
T TIGR02638 10 SYFGAGAIE-DIVDEVKRRGFKKALVVTDKDLIK----FGVADKVTDLLDEAGIAYELFDEVKPNPTI-TVVKAGVAAFK 83 (379)
T ss_pred EEECcCHHH-HHHHHHHhcCCCEEEEEcCcchhh----ccchHHHHHHHHHCCCeEEEECCCCCCcCH-HHHHHHHHHHH
Confidence 567877433 233444445667778888542111 012345777778889987654433211001 11225667788
Q ss_pred cCCCcEEEEE
Q psy5230 84 KIEFDIMIVM 93 (258)
Q Consensus 84 ~~~~Dl~vv~ 93 (258)
+.++|.+|.+
T Consensus 84 ~~~~D~Iiai 93 (379)
T TIGR02638 84 ASGADYLIAI 93 (379)
T ss_pred hcCCCEEEEe
Confidence 8999999877
No 315
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=45.76 E-value=59 Score=30.50 Aligned_cols=60 Identities=7% Similarity=0.133 Sum_probs=39.4
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEcc
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQP 62 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~ 62 (258)
+++++|.+..++++...|.+.+.++. +++..+....+-.......+.+.-+++||.++.-
T Consensus 179 ~vvVIGgG~ig~E~A~~l~~~g~~Vt-li~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~ 238 (466)
T PRK07845 179 HLIVVGSGVTGAEFASAYTELGVKVT-LVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKR 238 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEE-EEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEcC
Confidence 68999999999999999988888864 4554333332111111123556667889998743
No 316
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=45.64 E-value=68 Score=29.23 Aligned_cols=61 Identities=15% Similarity=0.123 Sum_probs=36.9
Q ss_pred CeEEEE--cCCHHHHHHHHHHHhCCCcEEEEEcCC--C-CCCCCCCccCCcHHHHHHHHCCCcEEcc
Q psy5230 1 MKIIFA--GTSISAAAILDTLYNSEHNIVLILTKP--D-LHSGRGMKLNFSPVKKYALKHSIKIIQP 62 (258)
Q Consensus 1 mrI~f~--Gs~~fa~~~L~~L~~~~~~i~~Vvt~p--d-~~~gr~~~~~~~~v~~~A~~~gIpv~~~ 62 (258)
|||+.. |--+.|+. ..-|.++||+|++|.-.- + ...+.-......+++..|.+.|||++..
T Consensus 4 ~kV~v~mSGGVDSSVa-A~lLk~QGyeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~v 69 (356)
T COG0482 4 KKVLVGMSGGVDSSVA-AYLLKEQGYEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVV 69 (356)
T ss_pred cEEEEEccCCHHHHHH-HHHHHHcCCeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCCceEEE
Confidence 566654 44456653 345677899999998742 2 1111111112236899999999998653
No 317
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=45.49 E-value=38 Score=25.29 Aligned_cols=28 Identities=14% Similarity=0.170 Sum_probs=23.0
Q ss_pred eEEEEc----CCHHHHHHHHHHHhCCCcEEEE
Q psy5230 2 KIIFAG----TSISAAAILDTLYNSEHNIVLI 29 (258)
Q Consensus 2 rI~f~G----s~~fa~~~L~~L~~~~~~i~~V 29 (258)
+|+++| ...+|..+++.|.+.|+++..|
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~G~~v~~V 33 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAAGYEVYPV 33 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHTT-EEEEE
T ss_pred EEEEEcccCCCCChHHHHHHHHHhCCCEEEEE
Confidence 688999 4469999999999988888766
No 318
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=45.44 E-value=82 Score=28.82 Aligned_cols=31 Identities=13% Similarity=0.093 Sum_probs=23.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcC
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTK 32 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~ 32 (258)
|+++++.+.........|.+.|.+++.++|.
T Consensus 288 rv~I~~~~~~~~~~~~~l~elG~~v~~~~~~ 318 (406)
T cd01967 288 KVIIYTGGARSWHVIAALRELGMEVVAAGYE 318 (406)
T ss_pred EEEEEccCcchHHHHHHHHHcCCEEEEEEEe
Confidence 6777766667777777788889998877774
No 319
>PLN02602 lactate dehydrogenase
Probab=45.35 E-value=2e+02 Score=26.15 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCC
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSE 23 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~ 23 (258)
+||+++|.+..+..+.-.|...+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~ 60 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQD 60 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC
Confidence 48999999999999998888766
No 320
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=45.28 E-value=1.4e+02 Score=27.51 Aligned_cols=84 Identities=8% Similarity=-0.039 Sum_probs=47.2
Q ss_pred EEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHHHh
Q psy5230 4 IFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKLLN 83 (258)
Q Consensus 4 ~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~l~ 83 (258)
++||.+.... +-+.+.+.|...+.|+|.+.-.. .-....+.+..++.|+.+...+....+... ....+..+..+
T Consensus 30 i~fG~g~~~~-l~~~~~~~g~~~~lvv~~~~~~~----~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~-~~v~~~~~~~r 103 (395)
T PRK15454 30 TLCGPGAVSS-CGQQAQTRGLKHLFVMADSFLHQ----AGMTAGLTRSLAVKGIAMTLWPCPVGEPCI-TDVCAAVAQLR 103 (395)
T ss_pred EEECcCHHHH-HHHHHHhcCCCEEEEEcCcchhh----CccHHHHHHHHHHcCCeEEEECCCCCCcCH-HHHHHHHHHHH
Confidence 4678764422 33334445767777887532111 112245777778899987544333211000 11225667788
Q ss_pred cCCCcEEEEE
Q psy5230 84 KIEFDIMIVM 93 (258)
Q Consensus 84 ~~~~Dl~vv~ 93 (258)
+.++|.+|.+
T Consensus 104 ~~~~D~Iiav 113 (395)
T PRK15454 104 ESGCDGVIAF 113 (395)
T ss_pred hcCcCEEEEe
Confidence 9999999988
No 321
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=45.25 E-value=1.2e+02 Score=27.52 Aligned_cols=84 Identities=19% Similarity=0.116 Sum_probs=47.5
Q ss_pred EEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHHHh
Q psy5230 4 IFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKLLN 83 (258)
Q Consensus 4 ~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~l~ 83 (258)
++||.+.+.. +-+.|.+.|..-+.|||.+.... ......+.+...++|+.+...+.......+ ....+..+..+
T Consensus 9 i~~G~g~l~~-l~~~l~~~g~~~~lvv~~~~~~~----~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~-~~v~~~~~~~~ 82 (377)
T cd08176 9 NLFGAGAIKE-IGDELKNLGFKKALIVTDKGLVK----IGVVEKVTDVLDEAGIDYVIYDGVKPNPTI-TNVKDGLAVFK 82 (377)
T ss_pred EEECcCHHHH-HHHHHHHhCCCeEEEECCchHhh----cCcHHHHHHHHHHcCCeEEEeCCCCCCCCH-HHHHHHHHHHH
Confidence 4678875432 33444444666667887542211 012345777788889987554433211111 11225556778
Q ss_pred cCCCcEEEEE
Q psy5230 84 KIEFDIMIVM 93 (258)
Q Consensus 84 ~~~~Dl~vv~ 93 (258)
+.++|++|.+
T Consensus 83 ~~~~D~IIav 92 (377)
T cd08176 83 KEGCDFIISI 92 (377)
T ss_pred hcCCCEEEEe
Confidence 8899999877
No 322
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=45.20 E-value=1.6e+02 Score=26.85 Aligned_cols=84 Identities=15% Similarity=0.120 Sum_probs=46.8
Q ss_pred EEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHHHh
Q psy5230 4 IFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKLLN 83 (258)
Q Consensus 4 ~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~l~ 83 (258)
++||.+.... +-+.+.+.|.+-+.|||.+.-.. .-....+....+++|+.+...+........ ....+..+.++
T Consensus 11 i~~G~g~l~~-l~~~~~~~g~~~~lvvtd~~~~~----~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~-~~v~~~~~~~~ 84 (382)
T PRK10624 11 AYFGRGAIGA-LTDEVKRRGFKKALIVTDKTLVK----CGVVAKVTDVLDAAGLAYEIYDGVKPNPTI-EVVKEGVEVFK 84 (382)
T ss_pred EEECcCHHHH-HHHHHHhcCCCEEEEEeCcchhh----CcchHHHHHHHHHCCCeEEEeCCCCCCcCH-HHHHHHHHHHH
Confidence 4558775432 33444444667778888532111 112335777788889887554433211001 11225567788
Q ss_pred cCCCcEEEEE
Q psy5230 84 KIEFDIMIVM 93 (258)
Q Consensus 84 ~~~~Dl~vv~ 93 (258)
+.++|++|.+
T Consensus 85 ~~~~D~IIai 94 (382)
T PRK10624 85 ASGADYLIAI 94 (382)
T ss_pred hcCCCEEEEe
Confidence 8999998876
No 323
>PLN02735 carbamoyl-phosphate synthase
Probab=45.10 E-value=44 Score=35.21 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=28.4
Q ss_pred CeEEEEcCCHH-----------HHHHHHHHHhCCCcEEEEEcCCC
Q psy5230 1 MKIIFAGTSIS-----------AAAILDTLYNSEHNIVLILTKPD 34 (258)
Q Consensus 1 mrI~f~Gs~~f-----------a~~~L~~L~~~~~~i~~Vvt~pd 34 (258)
.||+++|++.. |..++++|.+.|+++++|=+.|+
T Consensus 24 kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi~vd~np~ 68 (1102)
T PLN02735 24 KKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSNPA 68 (1102)
T ss_pred CEEEEECCCccccccceeecchHHHHHHHHHHcCCEEEEEeCCcc
Confidence 48999999974 66799999999999988877664
No 324
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=45.07 E-value=62 Score=29.19 Aligned_cols=31 Identities=13% Similarity=0.207 Sum_probs=27.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhC-CCcEEEEEc
Q psy5230 1 MKIIFAGTSISAAAILDTLYNS-EHNIVLILT 31 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~-~~~i~~Vvt 31 (258)
|||++.|.+.+|...++.+.++ ++++++|.-
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d 33 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAK 33 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEEC
Confidence 7999999999999999998875 488998875
No 325
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=45.06 E-value=65 Score=23.76 Aligned_cols=47 Identities=13% Similarity=0.161 Sum_probs=26.6
Q ss_pred HHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEcc
Q psy5230 16 LDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQP 62 (258)
Q Consensus 16 L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~ 62 (258)
+..++.+..++-.||.-|+....+.....-..+...|.++|||++..
T Consensus 59 i~~~i~~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T~ 105 (112)
T cd00532 59 VDAAIAEKGKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTTP 105 (112)
T ss_pred HHHHHhCCCCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEEC
Confidence 33444431366666665652221111223346899999999999864
No 326
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=45.00 E-value=1.5e+02 Score=25.54 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcE
Q psy5230 11 SAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKI 59 (258)
Q Consensus 11 fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv 59 (258)
.+....+.|++.||.-+++++.+..... ......-..+.+.++|+++
T Consensus 161 ~~~~a~~~L~~~G~~~I~~i~~~~~~~~--~~~R~~Gf~~al~~~~~~~ 207 (327)
T PRK10423 161 GGDLATQYLIDKGYTRIACITGPLDKTP--ARLRLEGYRAAMKRAGLNI 207 (327)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCccccc--hHHHHHHHHHHHHHcCCCC
Confidence 3567778899999988888865432110 0112234677888999875
No 327
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=44.86 E-value=1.8e+02 Score=27.38 Aligned_cols=82 Identities=15% Similarity=0.181 Sum_probs=48.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCC---CC---ccCC---cHHHHHHHHCCCcEEccCCCCCCcccc
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGR---GM---KLNF---SPVKKYALKHSIKIIQPISLKLNGKYH 72 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr---~~---~~~~---~~v~~~A~~~gIpv~~~~~~~~~~~~~ 72 (258)
||+++|.+..|+.+...|...|+++ .|+-..+...|. |. .+.. ....+++++.|+.++.-......
T Consensus 143 ~V~IIG~GpaGl~aA~~l~~~G~~V-~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~---- 217 (467)
T TIGR01318 143 RVAVIGAGPAGLACADILARAGVQV-VVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD---- 217 (467)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeE-EEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc----
Confidence 7999999999999999999888885 455443333221 00 0000 12356778899987643322111
Q ss_pred cchHHHHHHHhcCCCcEEEEE
Q psy5230 73 KIANETHKLLNKIEFDIMIVM 93 (258)
Q Consensus 73 ~~~~~~~~~l~~~~~Dl~vv~ 93 (258)
-..+.+. ..+|.+|.+
T Consensus 218 ----~~~~~~~-~~~D~vilA 233 (467)
T TIGR01318 218 ----ISLDDLL-EDYDAVFLG 233 (467)
T ss_pred ----cCHHHHH-hcCCEEEEE
Confidence 0112222 368998887
No 328
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=44.81 E-value=1.5e+02 Score=27.02 Aligned_cols=84 Identities=14% Similarity=0.084 Sum_probs=47.1
Q ss_pred EEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHHHh
Q psy5230 4 IFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKLLN 83 (258)
Q Consensus 4 ~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~l~ 83 (258)
++||.+.+.. +-+.|.+.|..-+.|||.+.-.. .-....+.+..+++|+.+...+.......+ ....+..+.++
T Consensus 7 i~~G~g~l~~-l~~~l~~~g~~~~lvvt~~~~~~----~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~-~~v~~~~~~~~ 80 (374)
T cd08189 7 LFVGSGSLAQ-LPAAISQLGVKKVLIVTDKGLVK----LGLLDKVLEALEGAGIEYAVYDGVPPDPTI-ENVEAGLALYR 80 (374)
T ss_pred EEECcCHHHH-HHHHHHhcCCCeEEEEeCcchhh----cccHHHHHHHHHhcCCeEEEeCCCCCCcCH-HHHHHHHHHHH
Confidence 5678774332 23344444656778888532111 011235677777889987655443211111 11225667788
Q ss_pred cCCCcEEEEE
Q psy5230 84 KIEFDIMIVM 93 (258)
Q Consensus 84 ~~~~Dl~vv~ 93 (258)
+.++|.+|.+
T Consensus 81 ~~~~d~IIai 90 (374)
T cd08189 81 ENGCDAILAV 90 (374)
T ss_pred hcCCCEEEEe
Confidence 8999998877
No 329
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=44.80 E-value=26 Score=28.56 Aligned_cols=68 Identities=18% Similarity=0.072 Sum_probs=38.8
Q ss_pred EcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHHHhcC
Q psy5230 6 AGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKLLNKI 85 (258)
Q Consensus 6 ~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (258)
+|+++.|+..|... ..+-+|+|. .+.+-++|.+.|+..+|.-=+-|...+. .-++.+++.
T Consensus 57 l~~D~~~i~~L~~~----~~~dGIIST------------k~~~i~~Ak~~gl~tIqRiFliDS~al~----~~~~~i~~~ 116 (175)
T PF04309_consen 57 LSRDEAGIEYLKEY----GKPDGIIST------------KSNLIKRAKKLGLLTIQRIFLIDSSALE----TGIKQIEQS 116 (175)
T ss_dssp B-SSHHHHHHHHHT----T--SEEEES------------SHHHHHHHHHTT-EEEEEEE-SSHHHHH----HHHHHHHHH
T ss_pred CCCCHHHHHHHHHc----CCCcEEEeC------------CHHHHHHHHHcCCEEEEEeeeecHHHHH----HHHHHHhhc
Confidence 36666666665544 344477774 2458899999999877643222321111 456788889
Q ss_pred CCcEEEEE
Q psy5230 86 EFDIMIVM 93 (258)
Q Consensus 86 ~~Dl~vv~ 93 (258)
+||.+=+.
T Consensus 117 ~PD~vEil 124 (175)
T PF04309_consen 117 KPDAVEIL 124 (175)
T ss_dssp T-SEEEEE
T ss_pred CCCEEEEc
Confidence 99998433
No 330
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=44.49 E-value=47 Score=25.42 Aligned_cols=47 Identities=15% Similarity=0.120 Sum_probs=26.1
Q ss_pred HHHHHHHHHhCCCcEEEEEc-CCCCCC-CCCCcc---CCcHHHHHHHHCCCcE
Q psy5230 12 AAAILDTLYNSEHNIVLILT-KPDLHS-GRGMKL---NFSPVKKYALKHSIKI 59 (258)
Q Consensus 12 a~~~L~~L~~~~~~i~~Vvt-~pd~~~-gr~~~~---~~~~v~~~A~~~gIpv 59 (258)
+...|+.|.++|+.++ ++| ++.... |-+.++ ......+|..++|+|+
T Consensus 29 ~ie~L~~l~~~G~~Ii-iaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipY 80 (126)
T TIGR01689 29 VIEKLRHYKALGFEIV-ISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPY 80 (126)
T ss_pred HHHHHHHHHHCCCEEE-EECCCCchhhhccccccchhhHHHHHHHHHHcCCCC
Confidence 4555666667788864 455 222111 111111 1236788999999997
No 331
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=44.42 E-value=64 Score=25.88 Aligned_cols=17 Identities=24% Similarity=0.135 Sum_probs=15.4
Q ss_pred HHHHHHhcCCCcEEEEE
Q psy5230 77 ETHKLLNKIEFDIMIVM 93 (258)
Q Consensus 77 ~~~~~l~~~~~Dl~vv~ 93 (258)
++++.+++.+||++++.
T Consensus 92 ~i~~~I~~~~pdiv~vg 108 (172)
T PF03808_consen 92 AIINRINASGPDIVFVG 108 (172)
T ss_pred HHHHHHHHcCCCEEEEE
Confidence 88889999999999887
No 332
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=44.35 E-value=39 Score=29.22 Aligned_cols=89 Identities=9% Similarity=0.094 Sum_probs=58.1
Q ss_pred HHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHHHhcCCCcEEEEE-ee
Q psy5230 17 DTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKLLNKIEFDIMIVM-GI 95 (258)
Q Consensus 17 ~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dl~vv~-~I 95 (258)
+...+.|-.-+.|.|.|.--.| ....+......-++|++..+-+.++ .-++......+|.+.+. ..
T Consensus 77 ~~~~~~GA~aisvlte~~~f~g-----~~~~l~~v~~~v~iPvl~kdfi~~~--------~qi~~a~~~GAD~VlLi~~~ 143 (260)
T PRK00278 77 KAYEAGGAACLSVLTDERFFQG-----SLEYLRAARAAVSLPVLRKDFIIDP--------YQIYEARAAGADAILLIVAA 143 (260)
T ss_pred HHHHhCCCeEEEEecccccCCC-----CHHHHHHHHHhcCCCEEeeeecCCH--------HHHHHHHHcCCCEEEEEecc
Confidence 3344445666677776543332 2456777777788999864434444 44566778889988777 44
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q psy5230 96 LPEDTSLTLQNKLEKLSKILIID 118 (258)
Q Consensus 96 ~~~dt~~~L~~kl~~~g~~ll~~ 118 (258)
.+.++..+|.+....+|.+.|++
T Consensus 144 l~~~~l~~li~~a~~lGl~~lve 166 (260)
T PRK00278 144 LDDEQLKELLDYAHSLGLDVLVE 166 (260)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEE
Confidence 45578888888888888775543
No 333
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=44.34 E-value=47 Score=26.14 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=26.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhC-CCcEEEEEc
Q psy5230 1 MKIIFAGTSISAAAILDTLYNS-EHNIVLILT 31 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~-~~~i~~Vvt 31 (258)
|||++.|.+.++..+++.+.+. +.+++++.-
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d 32 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDIEVVAIND 32 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeec
Confidence 7999999999999999998864 478877764
No 334
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=44.31 E-value=1e+02 Score=27.13 Aligned_cols=65 Identities=12% Similarity=0.124 Sum_probs=41.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHH
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHK 80 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~ 80 (258)
.|++++|.+..|..+...|...|.++ .|+.+. ..-.+.+++.|..+...+ ++.+
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V-~v~~r~------------~~~~~~~~~~G~~~~~~~-------------~l~~ 206 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANV-TVGARK------------SAHLARITEMGLSPFHLS-------------ELAE 206 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEE-EEEECC------------HHHHHHHHHcCCeeecHH-------------HHHH
Confidence 37999999999999999999888755 344321 012456677776543221 2333
Q ss_pred HHhcCCCcEEEEE
Q psy5230 81 LLNKIEFDIMIVM 93 (258)
Q Consensus 81 ~l~~~~~Dl~vv~ 93 (258)
.++ ++|++|..
T Consensus 207 ~l~--~aDiVI~t 217 (296)
T PRK08306 207 EVG--KIDIIFNT 217 (296)
T ss_pred HhC--CCCEEEEC
Confidence 333 58988865
No 335
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=44.23 E-value=92 Score=27.83 Aligned_cols=57 Identities=7% Similarity=0.063 Sum_probs=37.6
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEcc
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQP 62 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~ 62 (258)
+++++|.+..++.+...|.+.+.+.+.|+...+... ......+.+..+++||+++..
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~----~~~~~~~~~~l~~~gi~i~~~ 230 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINE----APAGKYEIERLIARGVEFLEL 230 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhh----CCCCHHHHHHHHHcCCEEeec
Confidence 689999999999999999888876456665432111 001123445577889998653
No 336
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=44.20 E-value=2e+02 Score=24.38 Aligned_cols=31 Identities=23% Similarity=0.299 Sum_probs=25.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcC
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTK 32 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~ 32 (258)
++|+++|.+..|..=++.|++.|-+| .||++
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~gA~V-tVVap 56 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKGCYV-YILSK 56 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEE-EEEcC
Confidence 47999999999999999999987665 56663
No 337
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=44.19 E-value=1.1e+02 Score=28.92 Aligned_cols=30 Identities=0% Similarity=0.032 Sum_probs=19.9
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEc
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILT 31 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt 31 (258)
|++++|.+.-+..+...|.+.|.+++++-|
T Consensus 337 rv~i~~g~~~~~~~~~~l~ELGmevv~~g~ 366 (466)
T TIGR01282 337 TVMLYVGGLRPRHVIGAFEDLGMEVIGTGY 366 (466)
T ss_pred EEEEECCCCcHHHHHHHHHHCCCEEEEEee
Confidence 677777555555566667777888875544
No 338
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=44.13 E-value=66 Score=29.75 Aligned_cols=59 Identities=14% Similarity=0.112 Sum_probs=39.4
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEc
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQ 61 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~ 61 (258)
+++++|.+..++++-..|.+.+.++. ++++.+....+-.......+.+..+++||.++.
T Consensus 160 ~v~ViGgG~~g~E~A~~l~~~g~~Vt-li~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~ 218 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFANFGSKVT-ILEAASLFLPREDRDIADNIATILRDQGVDIIL 218 (441)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEE-EEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEe
Confidence 68999999999999999998888874 555433322111111112356677889999874
No 339
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=44.11 E-value=1.7e+02 Score=28.69 Aligned_cols=83 Identities=16% Similarity=0.181 Sum_probs=49.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCC---CC---ccCCc---HHHHHHHHCCCcEEccCCCCCCccc
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGR---GM---KLNFS---PVKKYALKHSIKIIQPISLKLNGKY 71 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr---~~---~~~~~---~v~~~A~~~gIpv~~~~~~~~~~~~ 71 (258)
.||+++|++..|+.+...|...|+++ .|+-..+...|. |- ++... ...++..+.|+.++.-......
T Consensus 311 kkVaIIG~GpaGl~aA~~L~~~G~~V-tv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~--- 386 (639)
T PRK12809 311 EKVAVIGAGPAGLGCADILARAGVQV-DVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRD--- 386 (639)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCcE-EEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCc---
Confidence 37999999999999999999999885 556544443221 00 11111 1245667889887644333211
Q ss_pred ccchHHHHHHHhcCCCcEEEEE
Q psy5230 72 HKIANETHKLLNKIEFDIMIVM 93 (258)
Q Consensus 72 ~~~~~~~~~~l~~~~~Dl~vv~ 93 (258)
..++.+. ..+|.+|++
T Consensus 387 -----~~~~~l~-~~~DaV~la 402 (639)
T PRK12809 387 -----ITFSDLT-SEYDAVFIG 402 (639)
T ss_pred -----CCHHHHH-hcCCEEEEe
Confidence 1122232 468988877
No 340
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=44.09 E-value=57 Score=34.20 Aligned_cols=34 Identities=15% Similarity=0.250 Sum_probs=27.9
Q ss_pred eEEEEcCCHH-----------HHHHHHHHHhCCCcEEEEEcCCCC
Q psy5230 2 KIIFAGTSIS-----------AAAILDTLYNSEHNIVLILTKPDL 35 (258)
Q Consensus 2 rI~f~Gs~~f-----------a~~~L~~L~~~~~~i~~Vvt~pd~ 35 (258)
||+++|++.. ++++.++|.+.|++++.|=+.|+.
T Consensus 556 kvlvlG~G~~rig~~~efd~~~v~~i~al~~~G~~vI~v~~npet 600 (1050)
T TIGR01369 556 KVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETIMINYNPET 600 (1050)
T ss_pred eEEEecCcccccccccccchHHHHHHHHHHhCCCEEEEEecCCcc
Confidence 7899998754 789999999999999877666654
No 341
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=44.05 E-value=85 Score=26.28 Aligned_cols=34 Identities=24% Similarity=0.510 Sum_probs=27.6
Q ss_pred CeEEEEcC-CHHHHHHHHHHHhCCCcEEEEEcCCC
Q psy5230 1 MKIIFAGT-SISAAAILDTLYNSEHNIVLILTKPD 34 (258)
Q Consensus 1 mrI~f~Gs-~~fa~~~L~~L~~~~~~i~~Vvt~pd 34 (258)
|+|+++|- +..+..+++.|++.++++.+++-.|+
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~ 35 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPE 35 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHH
Confidence 78888865 46899999999999999987776543
No 342
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=43.95 E-value=40 Score=29.75 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=25.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEE
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLI 29 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~V 29 (258)
|||+++|.+..|.-.-..|.++|+++..+
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~ 34 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFL 34 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence 89999999999998888898889888655
No 343
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=43.78 E-value=1e+02 Score=22.70 Aligned_cols=61 Identities=10% Similarity=0.080 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCC---CCcccccchHHHHHHHhc-C
Q psy5230 10 ISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLK---LNGKYHKIANETHKLLNK-I 85 (258)
Q Consensus 10 ~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~---~~~~~~~~~~~~~~~l~~-~ 85 (258)
+-..+..+.|.+.|+++. .|. .-.++-+++||++....+.. ++ ++.+.+++ .
T Consensus 12 ~~~~~~a~~l~~~G~~i~--AT~--------------gTa~~L~~~Gi~~~~v~~~~~~g~~--------~i~~~i~~~g 67 (112)
T cd00532 12 AMLVDLAPKLSSDGFPLF--ATG--------------GTSRVLADAGIPVRAVSKRHEDGEP--------TVDAAIAEKG 67 (112)
T ss_pred HHHHHHHHHHHHCCCEEE--ECc--------------HHHHHHHHcCCceEEEEecCCCCCc--------HHHHHHhCCC
Confidence 346677788888888884 331 13566677999976544432 23 78999999 9
Q ss_pred CCcEEEEEe
Q psy5230 86 EFDIMIVMG 94 (258)
Q Consensus 86 ~~Dl~vv~~ 94 (258)
++|++|..+
T Consensus 68 ~idlVIn~~ 76 (112)
T cd00532 68 KFDVVINLR 76 (112)
T ss_pred CEEEEEEcC
Confidence 999998874
No 344
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=43.74 E-value=1.1e+02 Score=28.53 Aligned_cols=68 Identities=18% Similarity=0.130 Sum_probs=45.0
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHH
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKL 81 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~ 81 (258)
|++++|.++.+....+.|.+.|.+++++++.-..+. .... ..+ .++. .+. . ++.+.
T Consensus 313 rvai~~~~~~~~~l~~~l~elGm~v~~~~~~~~~~~----------~~~~--~~~-~~~~-~D~--~--------~l~~~ 368 (432)
T TIGR01285 313 KVAIAAEPDLLAAWATFFTSMGAQIVAAVTTTGSPL----------LQKL--PVE-TVVI-GDL--E--------DLEDL 368 (432)
T ss_pred EEEEEcCHHHHHHHHHHHHHCCCEEEEEEeCCCCHH----------HHhC--CcC-cEEe-CCH--H--------HHHHH
Confidence 788899888888889999999999999998632111 1110 001 1111 111 1 67778
Q ss_pred HhcCCCcEEEEE
Q psy5230 82 LNKIEFDIMIVM 93 (258)
Q Consensus 82 l~~~~~Dl~vv~ 93 (258)
+++.++|+++.-
T Consensus 369 i~~~~~dliig~ 380 (432)
T TIGR01285 369 ACAAGADLLITN 380 (432)
T ss_pred HhhcCCCEEEEC
Confidence 888899999864
No 345
>PLN02206 UDP-glucuronate decarboxylase
Probab=43.65 E-value=36 Score=31.82 Aligned_cols=30 Identities=10% Similarity=0.454 Sum_probs=26.0
Q ss_pred CeEEEEc-CCHHHHHHHHHHHhCCCcEEEEE
Q psy5230 1 MKIIFAG-TSISAAAILDTLYNSEHNIVLIL 30 (258)
Q Consensus 1 mrI~f~G-s~~fa~~~L~~L~~~~~~i~~Vv 30 (258)
|||++.| |+-.|..+.+.|+++|++|+++.
T Consensus 120 ~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld 150 (442)
T PLN02206 120 LRVVVTGGAGFVGSHLVDRLMARGDSVIVVD 150 (442)
T ss_pred CEEEEECcccHHHHHHHHHHHHCcCEEEEEe
Confidence 8999999 56789999999999999987664
No 346
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=43.43 E-value=62 Score=28.40 Aligned_cols=77 Identities=6% Similarity=-0.040 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCC-CCcccccchHHHHHHHhcCCCc
Q psy5230 10 ISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLK-LNGKYHKIANETHKLLNKIEFD 88 (258)
Q Consensus 10 ~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~-~~~~~~~~~~~~~~~l~~~~~D 88 (258)
..+....+.|.+.++.-++++..++.+.|+. ....+++.++++|+.+....... +..++. ..+..+.+.+||
T Consensus 118 ~~~~~~~~~l~~~g~~~~~~i~~~~~~~g~~---~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~----~~~~~i~~~~pd 190 (341)
T cd06341 118 ASLTTWGDFAKDQGGTRAVALVTALSAAVSA---AAALLARSLAAAGVSVAGIVVITATAPDPT----PQAQQAAAAGAD 190 (341)
T ss_pred chhHHHHHHHHHcCCcEEEEEEeCCcHHHHH---HHHHHHHHHHHcCCccccccccCCCCCCHH----HHHHHHHhcCCC
Confidence 3455667778887766555554444345442 22357888999999764322111 111111 555667777899
Q ss_pred EEEEE
Q psy5230 89 IMIVM 93 (258)
Q Consensus 89 l~vv~ 93 (258)
.+++.
T Consensus 191 aV~~~ 195 (341)
T cd06341 191 AIITV 195 (341)
T ss_pred EEEEe
Confidence 88765
No 347
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=43.39 E-value=85 Score=25.01 Aligned_cols=75 Identities=11% Similarity=0.097 Sum_probs=43.3
Q ss_pred EEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHHHhc----CCCcEEEEE---eeCCCC
Q psy5230 27 VLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKLLNK----IEFDIMIVM---GILPED 99 (258)
Q Consensus 27 ~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~l~~----~~~Dl~vv~---~I~~~d 99 (258)
++|+|..|.. +........-+..+.++.|+.+....-+.|+. . ++.+.+++ ..+|++|+. ...+.|
T Consensus 7 v~vit~~d~~-~~~~d~n~~~l~~~L~~~G~~v~~~~iv~Dd~---~---~i~~~l~~~~~~~~~DlVIttGGtg~g~~D 79 (163)
T TIGR02667 7 IAILTVSDTR-TEEDDTSGQYLVERLTEAGHRLADRAIVKDDI---Y---QIRAQVSAWIADPDVQVILITGGTGFTGRD 79 (163)
T ss_pred EEEEEEeCcC-CccCCCcHHHHHHHHHHCCCeEEEEEEcCCCH---H---HHHHHHHHHHhcCCCCEEEECCCcCCCCCC
Confidence 4666655542 22212222357888999999876544343331 0 33333333 469999888 777777
Q ss_pred CHHHHHHHH
Q psy5230 100 TSLTLQNKL 108 (258)
Q Consensus 100 t~~~L~~kl 108 (258)
...+...++
T Consensus 80 ~t~eal~~l 88 (163)
T TIGR02667 80 VTPEALEPL 88 (163)
T ss_pred CcHHHHHHH
Confidence 766666555
No 348
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=43.37 E-value=81 Score=27.68 Aligned_cols=73 Identities=15% Similarity=0.069 Sum_probs=45.7
Q ss_pred CeEEEEcCC-HHHHHHHHHHHhCCCcEEEE-EcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHH
Q psy5230 1 MKIIFAGTS-ISAAAILDTLYNSEHNIVLI-LTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANET 78 (258)
Q Consensus 1 mrI~f~Gs~-~fa~~~L~~L~~~~~~i~~V-vt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~ 78 (258)
+||++.|.. .++..+.+++.+.+.++++. ++.+.. | .++.+++-. ++|++.|+...+ +
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~~~~~Lv~~~~~~~~~--~-------~~~~~~~g~-~v~v~~~~~~~~---------~- 60 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADAAGLEIVPTSFGGEEE--A-------ENEAEVAGK-EILLHGPSEREA---------R- 60 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhcCCCEEEeeEcccccc--c-------cchhhhccc-ceeeeccccccc---------c-
Confidence 578888866 69999999988878999887 654321 1 123344333 888877655432 2
Q ss_pred HHHHhcCCCc-EEEEE
Q psy5230 79 HKLLNKIEFD-IMIVM 93 (258)
Q Consensus 79 ~~~l~~~~~D-l~vv~ 93 (258)
++.+.+..+| ++|=+
T Consensus 61 l~~~~~~~~d~VvIDF 76 (275)
T TIGR02130 61 IGEVFAKYPELICIDY 76 (275)
T ss_pred HHHHHhhcCCEEEEEC
Confidence 3333344588 55544
No 349
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=43.14 E-value=62 Score=29.20 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=25.7
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEE
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLIL 30 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vv 30 (258)
+|+|+|.+..+.+.-+.|.+.|++++...
T Consensus 18 tVGIIG~GsIG~amA~nL~d~G~~ViV~~ 46 (335)
T PRK13403 18 TVAVIGYGSQGHAQAQNLRDSGVEVVVGV 46 (335)
T ss_pred EEEEEeEcHHHHHHHHHHHHCcCEEEEEE
Confidence 79999999999999999999999886443
No 350
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=42.92 E-value=75 Score=28.09 Aligned_cols=71 Identities=14% Similarity=0.158 Sum_probs=43.9
Q ss_pred HHHHHHHHhCC--CcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHHHhcCCCcEE
Q psy5230 13 AAILDTLYNSE--HNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKLLNKIEFDIM 90 (258)
Q Consensus 13 ~~~L~~L~~~~--~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dl~ 90 (258)
..+++.+.+.+ .-.++++|++|-.-|. -....-|.+.|.+.|+|.+---... .+ .+-=..++..+|++
T Consensus 143 ~~viee~~~~~g~~~~lallTh~Dg~YGN--l~Dakkva~ic~e~gvPlllN~AYt-~G-------rmpvs~ke~g~DFi 212 (382)
T COG1103 143 AEVIEEVKDEGGDPPALALLTHVDGEYGN--LADAKKVAKICREYGVPLLLNCAYT-VG-------RMPVSGKEIGADFI 212 (382)
T ss_pred HHHHHHHHhccCCCceEEEEeccCCCcCC--chhhHHHHHHHHHcCCceEeeccee-ec-------cccccccccCCCEE
Confidence 45777777764 3468999999976652 2334458899999999985311000 00 01112446789998
Q ss_pred EEE
Q psy5230 91 IVM 93 (258)
Q Consensus 91 vv~ 93 (258)
|-.
T Consensus 213 VgS 215 (382)
T COG1103 213 VGS 215 (382)
T ss_pred Eec
Confidence 755
No 351
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=42.87 E-value=73 Score=22.12 Aligned_cols=30 Identities=13% Similarity=0.196 Sum_probs=23.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEE
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLIL 30 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vv 30 (258)
.+++++|+...+..+...|.+.+...+.++
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~ 53 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLC 53 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence 378999999999999999999754444444
No 352
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=42.81 E-value=1.8e+02 Score=24.66 Aligned_cols=81 Identities=10% Similarity=0.129 Sum_probs=44.5
Q ss_pred HHHHHHHHHhCCCcEEEEEcCCCCCCCC-CCcc-----CCcHHHHHHHHCCCcEEccCCCC-CCcccc--cchHHHHHHH
Q psy5230 12 AAAILDTLYNSEHNIVLILTKPDLHSGR-GMKL-----NFSPVKKYALKHSIKIIQPISLK-LNGKYH--KIANETHKLL 82 (258)
Q Consensus 12 a~~~L~~L~~~~~~i~~Vvt~pd~~~gr-~~~~-----~~~~v~~~A~~~gIpv~~~~~~~-~~~~~~--~~~~~~~~~l 82 (258)
.-.+|..+.++|+++..|++. .-..|. +... ......+.|+..|+.-+..-+.. ....+. ++...+.+.+
T Consensus 27 ~ggtla~~~~~G~~V~v~~lT-~Ge~g~~~~~~~l~~~R~~E~~~a~~~LGv~~~~~l~~~~~~~~~~~~~~~~~L~~ii 105 (237)
T COG2120 27 CGGTLAKLAARGVEVTVVCLT-LGEAGENGGELELGAVRRAEARAAARVLGVRETIFLGFPDTGADADPEEITGALVAII 105 (237)
T ss_pred cHHHHHHHHHCCCeEEEEEcc-CCcccccCCccchHHHHHHHHHHHHHhcCCCcceecCCCccccccChHHHHHHHHHHH
Confidence 346788888889988555443 222332 2121 33456778889999522211111 000011 2222466788
Q ss_pred hcCCCcEEEEE
Q psy5230 83 NKIEFDIMIVM 93 (258)
Q Consensus 83 ~~~~~Dl~vv~ 93 (258)
+..+||++++.
T Consensus 106 ~~~~P~~V~t~ 116 (237)
T COG2120 106 RRLRPDVVFTP 116 (237)
T ss_pred HHhCCCEEEec
Confidence 89999987776
No 353
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=42.76 E-value=22 Score=27.29 Aligned_cols=74 Identities=15% Similarity=0.169 Sum_probs=37.8
Q ss_pred HHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHHHhcCCCcEEEEE
Q psy5230 17 DTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKLLNKIEFDIMIVM 93 (258)
Q Consensus 17 ~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dl~vv~ 93 (258)
+.|+++||+-++.++.+.. ... .......+++.+.++|+++.......... .+........+++...||.+|+.
T Consensus 2 ~~L~~~G~r~i~~i~~~~~-~~~-~~~r~~gf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~pdaii~~ 75 (160)
T PF13377_consen 2 DYLIERGHRRIAFIGGPPN-SSV-SRERLEGFREALKEHGIEFEELIFFSDDD-SEDAREAQLLWLRRLRPDAIICS 75 (160)
T ss_dssp HHHHHTT-SSEEEEESSTT-SHH-HHHHHHHHHHHHHHTTSEEEGEEEEESSS-HHHHHHHHHHHHHTCSSSEEEES
T ss_pred hHHHHCCCCeEEEEecCCC-Chh-HHHHHHHHHHHHHHCCCCCCeeEeecCCc-chhHHHHHHHHHhcCCCcEEEEc
Confidence 5789999887777773211 100 01122347888999999964432111110 00000011124555588988886
No 354
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=42.68 E-value=1.3e+02 Score=26.91 Aligned_cols=31 Identities=16% Similarity=0.195 Sum_probs=24.9
Q ss_pred eEEEEcCCHHHHHHHHHHHh-CCCcEEEEEcC
Q psy5230 2 KIIFAGTSISAAAILDTLYN-SEHNIVLILTK 32 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~-~~~~i~~Vvt~ 32 (258)
+++++|++..|...+.+|.. .+.+-+.|+.+
T Consensus 131 ~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R 162 (326)
T TIGR02992 131 VVAIFGAGMQARLQLEALTLVRDIRSARIWAR 162 (326)
T ss_pred EEEEECCCHHHHHHHHHHHHhCCccEEEEECC
Confidence 68999999999999999975 45666677653
No 355
>PLN03034 phosphoglycerate kinase; Provisional
Probab=42.65 E-value=2.2e+02 Score=27.13 Aligned_cols=74 Identities=12% Similarity=0.204 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHH-HHHHHHCCCcEEccCCCCCCcccccchHHHHHHHhcCCCcE
Q psy5230 11 SAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPV-KKYALKHSIKIIQPISLKLNGKYHKIANETHKLLNKIEFDI 89 (258)
Q Consensus 11 fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v-~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dl 89 (258)
-++|+++.|+++|-.+ .+++|=.+|.|...+..-.|+ ..+.+-.|.+|.-.+..-.+ +..+.++++++.=
T Consensus 119 a~lpTI~~L~~~gakv-Vl~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~fv~d~~G~--------~~~~~i~~l~~Ge 189 (481)
T PLN03034 119 AAIPTIKYLISNGAKV-ILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGP--------EVEKLVASLPEGG 189 (481)
T ss_pred HHHHHHHHHHHCCCeE-EEEEecCCCCCCCcccCHHHHHHHHHHHhCCCeEECCCCCCH--------HHHHHHhcCCCCc
Confidence 5789999999998765 456765566553222222233 44666678888654444333 6666666666644
Q ss_pred EEEE
Q psy5230 90 MIVM 93 (258)
Q Consensus 90 ~vv~ 93 (258)
++.-
T Consensus 190 VlLL 193 (481)
T PLN03034 190 VLLL 193 (481)
T ss_pred EEEE
Confidence 4333
No 356
>PRK08264 short chain dehydrogenase; Validated
Probab=42.61 E-value=1.2e+02 Score=24.85 Aligned_cols=30 Identities=10% Similarity=0.164 Sum_probs=23.2
Q ss_pred eEEEEc-CCHHHHHHHHHHHhCCC-cEEEEEc
Q psy5230 2 KIIFAG-TSISAAAILDTLYNSEH-NIVLILT 31 (258)
Q Consensus 2 rI~f~G-s~~fa~~~L~~L~~~~~-~i~~Vvt 31 (258)
+|++.| ++..|..+.+.|.+.|+ .++.+..
T Consensus 8 ~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r 39 (238)
T PRK08264 8 VVLVTGANRGIGRAFVEQLLARGAAKVYAAAR 39 (238)
T ss_pred EEEEECCCchHHHHHHHHHHHCCcccEEEEec
Confidence 578887 56799999999999998 6654443
No 357
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=42.61 E-value=44 Score=29.37 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=26.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEE
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLIL 30 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vv 30 (258)
+||.|+|.+.+|......|...|+++..+-
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d 34 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLID 34 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEE
Confidence 489999999999999999999898876553
No 358
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=42.55 E-value=68 Score=29.92 Aligned_cols=60 Identities=12% Similarity=0.150 Sum_probs=39.9
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEcc
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQP 62 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~ 62 (258)
+++++|.+..++++-..|.+.|.++. ++...++...+-.......+.+..+++||.++.-
T Consensus 168 ~vvIIGgG~~g~E~A~~l~~~g~~Vt-li~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~ 227 (463)
T TIGR02053 168 SLAVIGGGAIGVELAQAFARLGSEVT-ILQRSDRLLPREEPEISAAVEEALAEEGIEVVTS 227 (463)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEE-EEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcC
Confidence 68999999999999999998888864 4554333332211111124566677889998753
No 359
>PRK12320 hypothetical protein; Provisional
Probab=42.27 E-value=39 Score=33.72 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=26.9
Q ss_pred CeEEEEc-CCHHHHHHHHHHHhCCCcEEEEEc
Q psy5230 1 MKIIFAG-TSISAAAILDTLYNSEHNIVLILT 31 (258)
Q Consensus 1 mrI~f~G-s~~fa~~~L~~L~~~~~~i~~Vvt 31 (258)
|||++.| ++-.|..+.+.|++.||+|.++.-
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr 32 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGHTVSGIAQ 32 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEeC
Confidence 8999999 678899999999999998877653
No 360
>PRK07024 short chain dehydrogenase; Provisional
Probab=42.25 E-value=98 Score=25.93 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=23.0
Q ss_pred CeEEEEc-CCHHHHHHHHHHHhCCCcEEEE
Q psy5230 1 MKIIFAG-TSISAAAILDTLYNSEHNIVLI 29 (258)
Q Consensus 1 mrI~f~G-s~~fa~~~L~~L~~~~~~i~~V 29 (258)
|+|++.| ++..|..+.+.|.+.|++++.+
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~ 32 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLV 32 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEE
Confidence 4777877 5579999999999999876544
No 361
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=42.22 E-value=1.3e+02 Score=24.58 Aligned_cols=62 Identities=18% Similarity=0.323 Sum_probs=39.0
Q ss_pred HHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHHHhcCCCcEEEE
Q psy5230 13 AAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKLLNKIEFDIMIV 92 (258)
Q Consensus 13 ~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dl~vv 92 (258)
..++++|.+ .++-+.|.+.|..|. .+.++.+.|++++..+.-. | ..++...+..+..-++|+
T Consensus 31 ~~v~~al~~-~~d~i~v~isp~tp~----------t~~~~~~~gv~vi~tpG~G----Y---v~Dl~~al~~l~~P~lvv 92 (177)
T COG2266 31 DRVLEALRK-IVDEIIVAISPHTPK----------TKEYLESVGVKVIETPGEG----Y---VEDLRFALESLGTPILVV 92 (177)
T ss_pred HHHHHHHHh-hcCcEEEEeCCCCHh----------HHHHHHhcCceEEEcCCCC----h---HHHHHHHHHhcCCceEEE
Confidence 346666655 444445566565444 7999999999998765421 1 227777788877434433
No 362
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=42.21 E-value=1.3e+02 Score=28.20 Aligned_cols=83 Identities=19% Similarity=0.264 Sum_probs=48.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCC---CC---ccCC---cHHHHHHHHCCCcEEccCCCCCCccc
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGR---GM---KLNF---SPVKKYALKHSIKIIQPISLKLNGKY 71 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr---~~---~~~~---~~v~~~A~~~gIpv~~~~~~~~~~~~ 71 (258)
+||+++|.+..|+.+...|.+.|+++ .|+...+...|. +. .+.. ....+++.++|+.++.-......
T Consensus 144 ~~VvIIGaGpAGl~aA~~l~~~G~~V-~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~--- 219 (471)
T PRK12810 144 KKVAVVGSGPAGLAAADQLARAGHKV-TVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGKD--- 219 (471)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCcE-EEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECCc---
Confidence 58999999999999999999989886 455544333221 10 0000 11235677889987643322111
Q ss_pred ccchHHHHHHHhcCCCcEEEEE
Q psy5230 72 HKIANETHKLLNKIEFDIMIVM 93 (258)
Q Consensus 72 ~~~~~~~~~~l~~~~~Dl~vv~ 93 (258)
-..+.+. ..+|.+|++
T Consensus 220 -----~~~~~~~-~~~d~vvlA 235 (471)
T PRK12810 220 -----ITAEELL-AEYDAVFLG 235 (471)
T ss_pred -----CCHHHHH-hhCCEEEEe
Confidence 0112222 368988887
No 363
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=42.16 E-value=53 Score=29.92 Aligned_cols=61 Identities=16% Similarity=0.120 Sum_probs=32.4
Q ss_pred CeEEEE--cCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCC-C----CccCCcHHHHHHHHCCCcEEcc
Q psy5230 1 MKIIFA--GTSISAAAILDTLYNSEHNIVLILTKPDLHSGR-G----MKLNFSPVKKYALKHSIKIIQP 62 (258)
Q Consensus 1 mrI~f~--Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr-~----~~~~~~~v~~~A~~~gIpv~~~ 62 (258)
|||++. |--+.|+..+ .|.++|+++++|.-.--..... + ..-.-..++..|++.|||++..
T Consensus 1 ~kV~vamSGGVDSsvaA~-LLk~~G~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~LgIp~~v~ 68 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSVAAA-LLKEQGYDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLGIPHYVV 68 (356)
T ss_dssp -EEEEE--SSHHHHHHHH-HHHHCT-EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT--EEEE
T ss_pred CeEEEEccCCHHHHHHHH-HHHhhcccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcCCCEEEE
Confidence 788876 3335666444 4667899999988742111000 0 0001234788999999998653
No 364
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=42.07 E-value=1.1e+02 Score=26.51 Aligned_cols=32 Identities=16% Similarity=0.311 Sum_probs=25.1
Q ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCC
Q psy5230 3 IIFAGTSISAAAILDTLYNSEHNIVLILTKPDLH 36 (258)
Q Consensus 3 I~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~ 36 (258)
|++-|+++.|..+-..|+..|+.+ |++..+.|
T Consensus 1 vivrG~gdiAsgva~~L~~aGf~V--v~~e~~~P 32 (256)
T TIGR03309 1 VVVRGAGDLATGVAHRLHRSGFKV--LMTETEQP 32 (256)
T ss_pred CEEecCchHHHHHHHHHHhCCCEE--EEccCCCC
Confidence 467799999999999999999986 45543333
No 365
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=41.97 E-value=73 Score=29.63 Aligned_cols=60 Identities=7% Similarity=-0.005 Sum_probs=39.9
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEcc
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQP 62 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~ 62 (258)
+|+++|.+..++++...|.+.|.++. ++...++....-.......+.+..+++|+.++..
T Consensus 177 ~v~IiGgG~~g~E~A~~l~~~g~~Vt-li~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~ 236 (461)
T PRK05249 177 SLIIYGAGVIGCEYASIFAALGVKVT-LINTRDRLLSFLDDEISDALSYHLRDSGVTIRHN 236 (461)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEE-EEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEEC
Confidence 68999999999999999999888774 5554333221100001124566677889998754
No 366
>COG2403 Predicted GTPase [General function prediction only]
Probab=41.88 E-value=40 Score=31.01 Aligned_cols=79 Identities=10% Similarity=0.217 Sum_probs=52.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhC--CCcEEEEEcC--CCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchH
Q psy5230 1 MKIIFAGTSISAAAILDTLYNS--EHNIVLILTK--PDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIAN 76 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~--~~~i~~Vvt~--pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~ 76 (258)
+||+.+|..+-=.+++....+. .++++++.+. |. -. .+..++.+...-..+|+|++..++.+
T Consensus 7 kRviiLgaggrdfhv~n~a~r~~~~yevvaf~aaqiiG-~~---er~yppsleg~~~p~Gvpi~~~k~~~---------- 72 (449)
T COG2403 7 KRVIILGAGGRDFHVFNVALRDNPEYEVVAFTAAQIIG-GT---ERIYPPSLEGVLYPLGVPILPEKDYD---------- 72 (449)
T ss_pred eeEEEEeccCcccchhhHHhccCCcceEEEEEEEEecC-Cc---cccCCCCcccccccCCccccccccHH----------
Confidence 5778888776666667665553 3677666542 11 11 13345557777788999998765542
Q ss_pred HHHHHHhcCCCcEEEEE
Q psy5230 77 ETHKLLNKIEFDIMIVM 93 (258)
Q Consensus 77 ~~~~~l~~~~~Dl~vv~ 93 (258)
++-+.+++...|..|..
T Consensus 73 ~lek~ire~~VD~~Vla 89 (449)
T COG2403 73 DLEKIIREKDVDIVVLA 89 (449)
T ss_pred HHHHHHHHcCCCeEEEE
Confidence 66788999999977655
No 367
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=41.75 E-value=44 Score=27.42 Aligned_cols=30 Identities=17% Similarity=0.100 Sum_probs=23.7
Q ss_pred CeEEEEcC-CHHHHHHHHHHHhCCCcEEEEE
Q psy5230 1 MKIIFAGT-SISAAAILDTLYNSEHNIVLIL 30 (258)
Q Consensus 1 mrI~f~Gs-~~fa~~~L~~L~~~~~~i~~Vv 30 (258)
++|++.|. +..+..+.+.|+++|++++.+.
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~ 36 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYD 36 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 36888985 5689999999999999864443
No 368
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=41.60 E-value=70 Score=23.87 Aligned_cols=45 Identities=9% Similarity=0.023 Sum_probs=26.9
Q ss_pred HHHHHhCCCcEEEEEcCCCCCCCCCC-ccCCcHHHHHHHHCCCcEEcc
Q psy5230 16 LDTLYNSEHNIVLILTKPDLHSGRGM-KLNFSPVKKYALKHSIKIIQP 62 (258)
Q Consensus 16 L~~L~~~~~~i~~Vvt~pd~~~gr~~-~~~~~~v~~~A~~~gIpv~~~ 62 (258)
+..++.+ .++-.|+..|++ .|+.. ...-..+...|.+++||+++.
T Consensus 62 i~~~i~~-g~i~~VInt~~~-~~~~~~~~dg~~iRr~a~~~~Ip~~Tt 107 (115)
T cd01422 62 IGALIAE-GEIDAVIFFRDP-LTAQPHEPDVKALLRLCDVYNIPLATN 107 (115)
T ss_pred HHHHHHc-CceeEEEEcCCC-CCCCcccccHHHHHHHHHHcCCCEEEc
Confidence 3344444 367677776653 12211 112346889999999999864
No 369
>KOG2380|consensus
Probab=41.48 E-value=1e+02 Score=28.12 Aligned_cols=47 Identities=17% Similarity=0.159 Sum_probs=34.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEc
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQ 61 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~ 61 (258)
++|+++|-+++|.-.-+.|.++||.+ +|+. + +.-...|++.|-..|+
T Consensus 53 l~IaIIGfGnmGqflAetli~aGh~l---i~hs-R----------sdyssaa~~yg~~~ft 99 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDAGHGL---ICHS-R----------SDYSSAAEKYGSAKFT 99 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhcCcee---EecC-c----------chhHHHHHHhcccccc
Confidence 47999999999999999999999876 3331 1 1245667777766553
No 370
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=41.47 E-value=51 Score=29.82 Aligned_cols=31 Identities=13% Similarity=0.152 Sum_probs=26.3
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcC
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTK 32 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~ 32 (258)
||+++|.++++.-+++.|.+.|..-+.|..+
T Consensus 176 ~vLvIGaGem~~l~a~~L~~~g~~~i~v~nR 206 (338)
T PRK00676 176 SLLFIGYSEINRKVAYYLQRQGYSRITFCSR 206 (338)
T ss_pred EEEEEcccHHHHHHHHHHHHcCCCEEEEEcC
Confidence 7999999999999999999998765555543
No 371
>PRK09492 treR trehalose repressor; Provisional
Probab=41.33 E-value=2.3e+02 Score=24.32 Aligned_cols=77 Identities=13% Similarity=0.172 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEc-cCCCCCCcccccchHHHHHHHhcCCCcE
Q psy5230 11 SAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQ-PISLKLNGKYHKIANETHKLLNKIEFDI 89 (258)
Q Consensus 11 fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~-~~~~~~~~~~~~~~~~~~~~l~~~~~Dl 89 (258)
-+....+.|++.||.-+++++.+....... ..+..-.++.++++|+++.. ........ ..+..+.+.+..||.
T Consensus 162 ~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~-~~R~~Gf~~al~~~g~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~a 235 (315)
T PRK09492 162 AIKLLMQRLYDQGHRHISYLGVDHSDVTTG-KRRHQAYLAFCKQHKLTPVAALGGLSMQS-----GYELVAKVLTPETTA 235 (315)
T ss_pred HHHHHHHHHHHcCCCeEEEEcCCcccchhH-HHHHHHHHHHHHHcCCCceeecCCCCchH-----HHHHHHHHhhcCCCE
Confidence 355678999999998888886432111000 11223567888899997532 11111110 112233332347888
Q ss_pred EEEE
Q psy5230 90 MIVM 93 (258)
Q Consensus 90 ~vv~ 93 (258)
+|+.
T Consensus 236 i~~~ 239 (315)
T PRK09492 236 LVCA 239 (315)
T ss_pred EEEc
Confidence 8877
No 372
>PRK12999 pyruvate carboxylase; Reviewed
Probab=41.26 E-value=93 Score=33.06 Aligned_cols=61 Identities=23% Similarity=0.320 Sum_probs=44.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCC------------CCCCc-----cCCcHHHHHHHHCCCcEEcc
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHS------------GRGMK-----LNFSPVKKYALKHSIKIIQP 62 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~------------gr~~~-----~~~~~v~~~A~~~gIpv~~~ 62 (258)
||++.+.++.+++++++..+.|+++++|.+.+|... |++.. +....+.++|+++++..+.|
T Consensus 7 kvLianrGeiavri~raa~elGi~~Vav~s~~D~~a~~~~~ADe~~~i~~~~~~~~~Yldid~Ii~iAk~~~iDaI~P 84 (1146)
T PRK12999 7 KVLVANRGEIAIRIFRAATELGIRTVAIYSEEDKLSLHRFKADEAYLIGEGKHPVRAYLDIDEIIRVAKQAGVDAIHP 84 (1146)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCEEEEEECCCCcCCchHHhCCEEEEcCCCCCcccCccCHHHHHHHHHHhCCCEEEe
Confidence 799999999999999999999999999988776531 11100 11134677788888765544
No 373
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=41.26 E-value=66 Score=29.33 Aligned_cols=60 Identities=7% Similarity=0.119 Sum_probs=40.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCc-cCCcHHHHHHHHCCCcEEcc
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMK-LNFSPVKKYALKHSIKIIQP 62 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~-~~~~~v~~~A~~~gIpv~~~ 62 (258)
||+++|.+..++++-..|.+.|.++ .|++..+...+|... .....+.+..+++|+.++.-
T Consensus 146 ~vvViGgG~ig~E~A~~l~~~g~~V-tlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~ 206 (396)
T PRK09754 146 SVVIVGAGTIGLELAASATQRRCKV-TVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLN 206 (396)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeE-EEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeC
Confidence 6899999999999999998888876 466654443332110 01123556677899998753
No 374
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.21 E-value=1.5e+02 Score=24.65 Aligned_cols=29 Identities=14% Similarity=0.259 Sum_probs=22.8
Q ss_pred eEEEEc-CCHHHHHHHHHHHhCCCcEEEEE
Q psy5230 2 KIIFAG-TSISAAAILDTLYNSEHNIVLIL 30 (258)
Q Consensus 2 rI~f~G-s~~fa~~~L~~L~~~~~~i~~Vv 30 (258)
++++.| +...|..+.+.|.+.|++++.+.
T Consensus 9 ~~lItGas~gIG~~~a~~l~~~G~~v~~~~ 38 (255)
T PRK06463 9 VALITGGTRGIGRAIAEAFLREGAKVAVLY 38 (255)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEe
Confidence 567777 45799999999999998876443
No 375
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=41.19 E-value=1.7e+02 Score=27.31 Aligned_cols=27 Identities=15% Similarity=0.288 Sum_probs=23.4
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEE
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVL 28 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~ 28 (258)
||+++|.+..|..+.+.|.+.|+++.+
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~~G~~V~~ 42 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKLGAKVTA 42 (458)
T ss_pred eEEEEcccHHHHHHHHHHHHCCCEEEE
Confidence 799999999999999999998886643
No 376
>PRK08017 oxidoreductase; Provisional
Probab=41.13 E-value=1.4e+02 Score=24.75 Aligned_cols=28 Identities=11% Similarity=0.062 Sum_probs=23.5
Q ss_pred eEEEEcC-CHHHHHHHHHHHhCCCcEEEE
Q psy5230 2 KIIFAGT-SISAAAILDTLYNSEHNIVLI 29 (258)
Q Consensus 2 rI~f~Gs-~~fa~~~L~~L~~~~~~i~~V 29 (258)
+|++.|. +..|..+.+.|.+.|++++.+
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~ 32 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAA 32 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 6888986 789999999999999887544
No 377
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=40.94 E-value=73 Score=29.84 Aligned_cols=59 Identities=8% Similarity=0.098 Sum_probs=38.8
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEc
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQ 61 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~ 61 (258)
+|+++|.+..++++-..|.+.|.++. ++...++...+........+.+..+++||.++.
T Consensus 182 ~vvIIGgG~~G~E~A~~l~~~g~~Vt-li~~~~~il~~~~~~~~~~l~~~l~~~gI~i~~ 240 (472)
T PRK05976 182 SLVIVGGGVIGLEWASMLADFGVEVT-VVEAADRILPTEDAELSKEVARLLKKLGVRVVT 240 (472)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEE-EEEecCccCCcCCHHHHHHHHHHHHhcCCEEEe
Confidence 78999999999999999998888875 554433322111110112355666788999864
No 378
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=40.92 E-value=74 Score=30.39 Aligned_cols=30 Identities=13% Similarity=0.187 Sum_probs=26.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEc
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILT 31 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt 31 (258)
++|.|+|-+.++.+.-..|+++|+++ .|..
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~V-~V~N 36 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFPI-SVYN 36 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCeE-EEEC
Confidence 58999999999999999999999877 4654
No 379
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=40.83 E-value=1.4e+02 Score=25.82 Aligned_cols=80 Identities=21% Similarity=0.089 Sum_probs=40.8
Q ss_pred eEEEEcCC-------HHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccc
Q psy5230 2 KIIFAGTS-------ISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKI 74 (258)
Q Consensus 2 rI~f~Gs~-------~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~ 74 (258)
||+++++. .+....+++|.+.|+++. |++..+.. ..........|++++........ +...
T Consensus 1 kIl~~~~~~~~GG~~~~~~~l~~~L~~~~~~v~-~i~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 68 (358)
T cd03812 1 KILHIVGTMNRGGIETFIMNYYRNLDRSKIQFD-FLVTSKEE---------GDYDDEIEKLGGKIYYIPARKKN--PLKY 68 (358)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHhcCccceEEE-EEEeCCCC---------cchHHHHHHcCCeEEEecCCCcc--HHHH
Confidence 56666553 244445566655677775 44432111 12345566778888742211100 0111
Q ss_pred hHHHHHHHhcCCCcEEEEE
Q psy5230 75 ANETHKLLNKIEFDIMIVM 93 (258)
Q Consensus 75 ~~~~~~~l~~~~~Dl~vv~ 93 (258)
...+...++..+||++.+-
T Consensus 69 ~~~~~~~~~~~~~Dvv~~~ 87 (358)
T cd03812 69 FKKLYKLIKKNKYDIVHVH 87 (358)
T ss_pred HHHHHHHHhcCCCCEEEEe
Confidence 1234455677899988765
No 380
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=40.82 E-value=78 Score=24.92 Aligned_cols=80 Identities=13% Similarity=0.140 Sum_probs=40.4
Q ss_pred EEEEcCCHHHHHHH-----HHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHH
Q psy5230 3 IIFAGTSISAAAIL-----DTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANE 77 (258)
Q Consensus 3 I~f~Gs~~fa~~~L-----~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~ 77 (258)
++|.|-+..|..++ ..+.+.+..++.|-+.+-++. ....+..++.+.|+|++......+. .+...+
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~ 73 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPA------AIEQLRVLGEQVGVPVFEEGEGKDP---VSIAKR 73 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChH------HHHHHHHhcccCCeEEEecCCCCCH---HHHHHH
Confidence 56666665444443 445555555544433321111 1123566788899998765322221 111113
Q ss_pred HHHHHhcCCCcEEE
Q psy5230 78 THKLLNKIEFDIMI 91 (258)
Q Consensus 78 ~~~~l~~~~~Dl~v 91 (258)
.++.....+.|++|
T Consensus 74 ~~~~~~~~~~d~vi 87 (173)
T cd03115 74 AIEHAREENFDVVI 87 (173)
T ss_pred HHHHHHhCCCCEEE
Confidence 33445566788876
No 381
>PLN02740 Alcohol dehydrogenase-like
Probab=40.77 E-value=1.5e+02 Score=26.66 Aligned_cols=44 Identities=11% Similarity=0.117 Sum_probs=29.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCc-EEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCc
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHN-IVLILTKPDLHSGRGMKLNFSPVKKYALKHSIK 58 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~-i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIp 58 (258)
+|+++|.+..+..+++.+...|.. ++++...++ -.++|.+.|..
T Consensus 201 ~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~-------------r~~~a~~~Ga~ 245 (381)
T PLN02740 201 SVAIFGLGAVGLAVAEGARARGASKIIGVDINPE-------------KFEKGKEMGIT 245 (381)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChH-------------HHHHHHHcCCc
Confidence 577888888888888777777763 544433221 25677778875
No 382
>PRK05875 short chain dehydrogenase; Provisional
Probab=40.65 E-value=1.2e+02 Score=25.62 Aligned_cols=29 Identities=10% Similarity=0.187 Sum_probs=23.6
Q ss_pred CeEEEEcC-CHHHHHHHHHHHhCCCcEEEE
Q psy5230 1 MKIIFAGT-SISAAAILDTLYNSEHNIVLI 29 (258)
Q Consensus 1 mrI~f~Gs-~~fa~~~L~~L~~~~~~i~~V 29 (258)
+++++.|. ...+..+.+.|.+.|++++.+
T Consensus 8 k~vlItGasg~IG~~la~~l~~~G~~V~~~ 37 (276)
T PRK05875 8 RTYLVTGGGSGIGKGVAAGLVAAGAAVMIV 37 (276)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEE
Confidence 36888885 579999999999999987654
No 383
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=40.65 E-value=53 Score=24.34 Aligned_cols=32 Identities=16% Similarity=0.334 Sum_probs=25.7
Q ss_pred eEEEEcC-CHHHHHHHHHHHhC-CCcEEEEEcCC
Q psy5230 2 KIIFAGT-SISAAAILDTLYNS-EHNIVLILTKP 33 (258)
Q Consensus 2 rI~f~Gs-~~fa~~~L~~L~~~-~~~i~~Vvt~p 33 (258)
||+++|. ...+...++.|.+. ++++++|++.+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~ 34 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASA 34 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEech
Confidence 6899994 67888888989885 68898887753
No 384
>PRK07538 hypothetical protein; Provisional
Probab=40.61 E-value=1.1e+02 Score=28.05 Aligned_cols=55 Identities=24% Similarity=0.347 Sum_probs=37.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcC-C-CCCCCCCCccCCcHHHHHHHHCCC
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTK-P-DLHSGRGMKLNFSPVKKYALKHSI 57 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~-p-d~~~gr~~~~~~~~v~~~A~~~gI 57 (258)
|+|+++|.+--|+.+-..|.+.|++++ |+=+ | .++.|++..+.+..++.+ .+.|+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~-v~E~~~~~~~~g~gi~l~p~~~~~L-~~lgl 57 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVV-VFEAAPELRPLGVGINLLPHAVREL-AELGL 57 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEE-EEEcCCcccccCcceeeCchHHHHH-HHCCC
Confidence 899999999999988888988898864 4432 2 234566655555544432 33444
No 385
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=40.51 E-value=1.1e+02 Score=26.77 Aligned_cols=37 Identities=16% Similarity=0.342 Sum_probs=31.1
Q ss_pred CeEEEEcC-CHHHHHHHHHHHhCC-CcEEEEEcCCCCCC
Q psy5230 1 MKIIFAGT-SISAAAILDTLYNSE-HNIVLILTKPDLHS 37 (258)
Q Consensus 1 mrI~f~Gs-~~fa~~~L~~L~~~~-~~i~~Vvt~pd~~~ 37 (258)
|||++.|. +-++..+.+.+.+.. +++++.+-+++.+.
T Consensus 3 iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~ 41 (266)
T COG0289 3 IKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLS 41 (266)
T ss_pred ceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccc
Confidence 89999998 579999999998874 88999888776544
No 386
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=40.33 E-value=45 Score=31.73 Aligned_cols=27 Identities=11% Similarity=0.150 Sum_probs=24.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEE
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIV 27 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~ 27 (258)
|||+|+|.+.+|...-..|+.+|+++.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~ 31 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVA 31 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEE
Confidence 689999999999999999999998774
No 387
>PRK06370 mercuric reductase; Validated
Probab=40.32 E-value=77 Score=29.55 Aligned_cols=59 Identities=7% Similarity=0.070 Sum_probs=39.6
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEc
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQ 61 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~ 61 (258)
+|+++|.+..++++-..|.+.|.++ .++...+....+-.......+.+..+++|+.++.
T Consensus 173 ~vvVIGgG~~g~E~A~~l~~~G~~V-tli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~ 231 (463)
T PRK06370 173 HLVIIGGGYIGLEFAQMFRRFGSEV-TVIERGPRLLPREDEDVAAAVREILEREGIDVRL 231 (463)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeE-EEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEe
Confidence 7899999999999999999888876 4555444332211000112456667789999874
No 388
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=40.08 E-value=57 Score=34.26 Aligned_cols=88 Identities=18% Similarity=0.251 Sum_probs=51.0
Q ss_pred CeEEEEcCCH-----------HHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCc
Q psy5230 1 MKIIFAGTSI-----------SAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNG 69 (258)
Q Consensus 1 mrI~f~Gs~~-----------fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~ 69 (258)
+||+++|++. .+++++++|.+.|++++.|=+.|+... .. ...|.+ -++.|... +
T Consensus 556 kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~G~~vI~vn~npetvs-~~--------~~~aD~---~y~ep~~~--e- 620 (1068)
T PRK12815 556 KKVLILGSGPIRIGQGIEFDYSSVHAAFALKKEGYETIMINNNPETVS-TD--------YDTADR---LYFEPLTL--E- 620 (1068)
T ss_pred ceEEEecccccccccccccchhHHHHHHHHHHcCCEEEEEeCCccccc-cc--------cccCce---EEEccCCH--H-
Confidence 4899999864 467889999999999887777664322 00 011111 12333222 2
Q ss_pred ccccchHHHHHHHhcCCCcEEEEEeeCCCCCHHHHHHHHHHHH
Q psy5230 70 KYHKIANETHKLLNKIEFDIMIVMGILPEDTSLTLQNKLEKLS 112 (258)
Q Consensus 70 ~~~~~~~~~~~~l~~~~~Dl~vv~~I~~~dt~~~L~~kl~~~g 112 (258)
.+++.++..++|.+++. . ...+...|...|...|
T Consensus 621 -------~vl~I~~~e~~dgVI~~-~-g~~~~~~la~~le~~G 654 (1068)
T PRK12815 621 -------DVLNVAEAENIKGVIVQ-F-GGQTAINLAKGLEEAG 654 (1068)
T ss_pred -------HHHHHHhhcCCCEEEEe-c-CcHHHHHHHHHHHHCC
Confidence 66777888888877652 1 1224444444444443
No 389
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=40.07 E-value=53 Score=27.78 Aligned_cols=31 Identities=10% Similarity=0.128 Sum_probs=28.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEc
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILT 31 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt 31 (258)
+||++.|.+..+..+.+.|.+.|..+++|.-
T Consensus 32 ~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D 62 (227)
T cd01076 32 ARVAIQGFGNVGSHAARFLHEAGAKVVAVSD 62 (227)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 6899999999999999999999988888854
No 390
>smart00652 eIF1a eukaryotic translation initiation factor 1A.
Probab=39.92 E-value=50 Score=23.34 Aligned_cols=26 Identities=12% Similarity=0.220 Sum_probs=14.8
Q ss_pred CcEEEEEeeCCcEEEEecCcEEEEEE
Q psy5230 205 PGTILNVNFHNGILVVCGKNVIKLLE 230 (258)
Q Consensus 205 pG~i~~~~~~~~l~V~c~dg~l~i~~ 230 (258)
-|+|+....++.+.|.|.||...+.+
T Consensus 8 ~g~V~~~lG~~~~~V~~~dG~~~la~ 33 (83)
T smart00652 8 IAQVVKMLGNGRLEVMCADGKERLAR 33 (83)
T ss_pred EEEEEEEcCCCEEEEEECCCCEEEEE
Confidence 35555554355566777777555433
No 391
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=39.90 E-value=79 Score=27.83 Aligned_cols=29 Identities=24% Similarity=0.369 Sum_probs=19.6
Q ss_pred eEEEEcCC------HHHHHHHHHHHhCCCcEEEEEc
Q psy5230 2 KIIFAGTS------ISAAAILDTLYNSEHNIVLILT 31 (258)
Q Consensus 2 rI~f~Gs~------~fa~~~L~~L~~~~~~i~~Vvt 31 (258)
||+|.+++ .-++++.++|.+ ||++..+.+
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~ 35 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIAS 35 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEc
Confidence 56664333 346678888888 999875544
No 392
>KOG1495|consensus
Probab=39.89 E-value=2e+02 Score=25.40 Aligned_cols=100 Identities=15% Similarity=0.190 Sum_probs=64.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhCC--CcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHH
Q psy5230 2 KIIFAGTSISAAAILDTLYNSE--HNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETH 79 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~--~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~ 79 (258)
||-+.|.++.+..|--.++..+ -|++.|=..+|+..| ..+=.+||-+++..+++....+|.
T Consensus 22 KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkG----------E~MDLqH~s~f~~~~~V~~~~Dy~------- 84 (332)
T KOG1495|consen 22 KITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKG----------EMMDLQHGSAFLSTPNVVASKDYS------- 84 (332)
T ss_pred eEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhh----------hhhhhccccccccCCceEecCccc-------
Confidence 7889999999999988887766 466666556666554 355678899988776654332221
Q ss_pred HHHhcCCCcEEEEE---eeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5230 80 KLLNKIEFDIMIVM---GILPEDTSLTLQNKLEKLSKILIIDTIKKIEY 125 (258)
Q Consensus 80 ~~l~~~~~Dl~vv~---~I~~~dt~~~L~~kl~~~g~~ll~~~l~~l~~ 125 (258)
..-+-+++|+. .=.+++|..+|.+| -.+++...++.+.+
T Consensus 85 ---~sa~S~lvIiTAGarq~~gesRL~lvQr----NV~ifK~iip~lv~ 126 (332)
T KOG1495|consen 85 ---VSANSKLVIITAGARQSEGESRLDLVQR----NVDIFKAIIPALVK 126 (332)
T ss_pred ---ccCCCcEEEEecCCCCCCCcHHHHHHHH----HHHHHHHHHHHHhh
Confidence 11234555444 33367787777655 44556666666655
No 393
>cd00318 Phosphoglycerate_kinase Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate. This reaction represents the first of the two substrate-level phosphorylation events in the glycolytic pathway. Substrate-level phosphorylation is defined as production of ATP by a process, which is catalyzed by water-soluble enzymes in the cytosol; not involving membranes and ion gradients.
Probab=39.83 E-value=2.5e+02 Score=26.02 Aligned_cols=75 Identities=12% Similarity=0.154 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhCCCcEEEEEcCCCCCCCC-CCccCCcHH-HHHHHHCCCcEEccCCCCCCcccccchHHHHHHHhcCCC
Q psy5230 10 ISAAAILDTLYNSEHNIVLILTKPDLHSGR-GMKLNFSPV-KKYALKHSIKIIQPISLKLNGKYHKIANETHKLLNKIEF 87 (258)
Q Consensus 10 ~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr-~~~~~~~~v-~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 87 (258)
.-++|+++.|+++|..+ .+++|=.+|.|- ..+..-.|+ +.+.+-.|.+|.-.+..-.+ +..+.++++.+
T Consensus 33 ~a~lpTI~~l~~~gakv-vl~SHlGRP~g~~~~~~SL~~va~~L~~lL~~~V~f~~d~~g~--------~~~~~i~~l~~ 103 (397)
T cd00318 33 RAALPTIKYLLEQGAKV-VLLSHLGRPKGEPNEKYSLAPVAKALSELLGQPVTFANDCVGP--------EAEEAVEALKP 103 (397)
T ss_pred HHHHHHHHHHHHCCCeE-EEEEecCCCCCCCCCCCCHHHHHHHHHHHHCCCcEECCCCCCH--------HHHHHHhcCCC
Confidence 35789999999998765 455665556542 112222244 34566678777554444333 55566666655
Q ss_pred cEEEEE
Q psy5230 88 DIMIVM 93 (258)
Q Consensus 88 Dl~vv~ 93 (258)
-=++..
T Consensus 104 GeIlLL 109 (397)
T cd00318 104 GDVLLL 109 (397)
T ss_pred CcEEEE
Confidence 433333
No 394
>PRK08219 short chain dehydrogenase; Provisional
Probab=39.75 E-value=1.4e+02 Score=24.04 Aligned_cols=28 Identities=25% Similarity=0.248 Sum_probs=21.8
Q ss_pred eEEEEcC-CHHHHHHHHHHHhCCCcEEEEE
Q psy5230 2 KIIFAGT-SISAAAILDTLYNSEHNIVLIL 30 (258)
Q Consensus 2 rI~f~Gs-~~fa~~~L~~L~~~~~~i~~Vv 30 (258)
++++.|. +..|..+.+.|.++ ++++++.
T Consensus 5 ~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~ 33 (227)
T PRK08219 5 TALITGASRGIGAAIARELAPT-HTLLLGG 33 (227)
T ss_pred EEEEecCCcHHHHHHHHHHHhh-CCEEEEe
Confidence 6888885 56888999999988 8876554
No 395
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=39.64 E-value=1.9e+02 Score=25.79 Aligned_cols=52 Identities=13% Similarity=0.115 Sum_probs=35.1
Q ss_pred EEcCCH--HHHHHHHHHHhCCCcEEEEEcCCC-CCCCCCCccCCcHHHHHHHHCCCcE
Q psy5230 5 FAGTSI--SAAAILDTLYNSEHNIVLILTKPD-LHSGRGMKLNFSPVKKYALKHSIKI 59 (258)
Q Consensus 5 f~Gs~~--fa~~~L~~L~~~~~~i~~Vvt~pd-~~~gr~~~~~~~~v~~~A~~~gIpv 59 (258)
++++|+ -+....+.|++.||+-+++++.+. ...++ .+..-..+.+.++|+++
T Consensus 154 ~V~~Dn~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~---~R~~Gf~~al~~~~~~~ 208 (333)
T COG1609 154 SVGIDNFAGAYLATEHLIELGHRRIAFIGGPLDSSASR---ERLEGYRAALREAGLPI 208 (333)
T ss_pred EEEEChHHHHHHHHHHHHHCCCceEEEEeCCCccccHh---HHHHHHHHHHHHCCCCC
Confidence 344454 455678999999999888888763 32322 12345778899999974
No 396
>PRK08618 ornithine cyclodeaminase; Validated
Probab=39.42 E-value=1.5e+02 Score=26.34 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=24.9
Q ss_pred eEEEEcCCHHHHHHHHHHHhC-CCcEEEEEcC
Q psy5230 2 KIIFAGTSISAAAILDTLYNS-EHNIVLILTK 32 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~-~~~i~~Vvt~ 32 (258)
+++++|++..|...+..+... +++.+.|+.+
T Consensus 129 ~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r 160 (325)
T PRK08618 129 TLCLIGTGGQAKGQLEAVLAVRDIERVRVYSR 160 (325)
T ss_pred EEEEECCcHHHHHHHHHHHhcCCccEEEEECC
Confidence 689999999999888887653 5777778764
No 397
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=39.42 E-value=85 Score=28.32 Aligned_cols=60 Identities=7% Similarity=0.126 Sum_probs=39.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCC-ccCCcHHHHHHHHCCCcEEcc
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGM-KLNFSPVKKYALKHSIKIIQP 62 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~-~~~~~~v~~~A~~~gIpv~~~ 62 (258)
||+++|.+..++++...|.+.+.++. +++..+....+-. ......+.+..+++|+.++..
T Consensus 143 ~vvViGgG~~g~e~A~~L~~~g~~Vt-lv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~ 203 (377)
T PRK04965 143 RVLVVGGGLIGTELAMDLCRAGKAVT-LVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLK 203 (377)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEE-EEecCCcccchhCCHHHHHHHHHHHHhCCCEEEEC
Confidence 68999999999999999998887775 4444333222110 001123566778899998643
No 398
>PRK12829 short chain dehydrogenase; Provisional
Probab=39.40 E-value=87 Score=26.11 Aligned_cols=30 Identities=10% Similarity=0.214 Sum_probs=23.5
Q ss_pred CeEEEEcCC-HHHHHHHHHHHhCCCcEEEEE
Q psy5230 1 MKIIFAGTS-ISAAAILDTLYNSEHNIVLIL 30 (258)
Q Consensus 1 mrI~f~Gs~-~fa~~~L~~L~~~~~~i~~Vv 30 (258)
+++++.|.. .++..+.+.|++.|++++.+.
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~ 42 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCD 42 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 467888765 689999999999999875554
No 399
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=39.39 E-value=2.9e+02 Score=24.90 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=22.2
Q ss_pred HHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEE
Q psy5230 12 AAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60 (258)
Q Consensus 12 a~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~ 60 (258)
|+..+..+..++-.|+.|-|.+. ....|+++|++-|-+++
T Consensus 48 A~~~i~~~~~~gg~iLfVgTk~~---------~~~~V~~~A~~~g~~yV 87 (326)
T PRK12311 48 ALQAVSDTVAKGGRVLFVGTKRQ---------AQDAVADAAKRSAQYFV 87 (326)
T ss_pred HHHHHHHHHhCCCEEEEEeCcHH---------HHHHHHHHHHHhCCeee
Confidence 33444445555566666666432 12356777777776653
No 400
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=39.33 E-value=34 Score=24.40 Aligned_cols=59 Identities=15% Similarity=0.241 Sum_probs=39.4
Q ss_pred cCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHHHhcCCCcEEEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy5230 43 LNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKLLNKIEFDIMIVMGILPEDTSLTLQNKLEKLSKILIID 118 (258)
Q Consensus 43 ~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dl~vv~~I~~~dt~~~L~~kl~~~g~~ll~~ 118 (258)
+....+.+||.++|||+-... . . .++..++..+.|+. .++.-..|..+++.....-..+
T Consensus 15 iT~~eLlkyskqy~i~it~~Q-A--~--------~I~~~lr~k~inIf------n~~~r~~llkeia~iT~p~ta~ 73 (85)
T PF11116_consen 15 ITAKELLKYSKQYNISITKKQ-A--E--------QIANILRGKNINIF------NEQERKKLLKEIAKITSPQTAK 73 (85)
T ss_pred CCHHHHHHHHHHhCCCCCHHH-H--H--------HHHHHHhcCCCCCC------CHHHHHHHHHHHHHhcCHHHHH
Confidence 455679999999999984321 1 1 77788898888887 4444556666676664433333
No 401
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=39.19 E-value=84 Score=29.52 Aligned_cols=59 Identities=12% Similarity=0.049 Sum_probs=38.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEc
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQ 61 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~ 61 (258)
+|+++|.+..++++-..|.+.+.++. |++..+....+........+.+..+++||.++.
T Consensus 185 ~vvVvGgG~~g~E~A~~l~~~g~~Vt-li~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~ 243 (475)
T PRK06327 185 KLAVIGAGVIGLELGSVWRRLGAEVT-ILEALPAFLAAADEQVAKEAAKAFTKQGLDIHL 243 (475)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEE-EEeCCCccCCcCCHHHHHHHHHHHHHcCcEEEe
Confidence 68999999999999988888887775 666544332211110112345556678998864
No 402
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=39.12 E-value=1.9e+02 Score=22.70 Aligned_cols=28 Identities=18% Similarity=0.419 Sum_probs=18.3
Q ss_pred CeEEEEcCCHHHHHH----HHHHHhCCCcEEEE
Q psy5230 1 MKIIFAGTSISAAAI----LDTLYNSEHNIVLI 29 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~----L~~L~~~~~~i~~V 29 (258)
|||+ +|+|.-+.+. .+.|.+.||+++.+
T Consensus 1 MkI~-IgsDh~G~~lK~~i~~~L~~~G~eV~D~ 32 (141)
T TIGR01118 1 MAII-IGSDLAGKRLKDVIKNFLVDNGFEVIDV 32 (141)
T ss_pred CEEE-EEeCcchHHHHHHHHHHHHHCCCEEEEc
Confidence 7854 7998766644 44455567888654
No 403
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=38.99 E-value=1.7e+02 Score=23.68 Aligned_cols=30 Identities=27% Similarity=0.261 Sum_probs=19.1
Q ss_pred CeEEEEcCCHHHHHH----HHHHHhCCCcEEEEEc
Q psy5230 1 MKIIFAGTSISAAAI----LDTLYNSEHNIVLILT 31 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~----L~~L~~~~~~i~~Vvt 31 (258)
|||+ +|+|..+.+. .+.|.+.||+++.+=+
T Consensus 1 MkI~-IgsDhaG~~lK~~l~~~L~~~G~eV~D~G~ 34 (171)
T PRK08622 1 MKIA-IGCDHIVTDEKMAVSDYLKSKGHEVIDVGT 34 (171)
T ss_pred CEEE-EEeCcchHHHHHHHHHHHHHCCCEEEEcCC
Confidence 7855 7999776543 3445556787765544
No 404
>PLN02852 ferredoxin-NADP+ reductase
Probab=38.96 E-value=2e+02 Score=27.48 Aligned_cols=83 Identities=10% Similarity=0.169 Sum_probs=50.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHh--CCCcEEEEEcCCCCCCCCCCc---cCC-------cHHHHHHHHCCCcEEccCCCCCC
Q psy5230 1 MKIIFAGTSISAAAILDTLYN--SEHNIVLILTKPDLHSGRGMK---LNF-------SPVKKYALKHSIKIIQPISLKLN 68 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~--~~~~i~~Vvt~pd~~~gr~~~---~~~-------~~v~~~A~~~gIpv~~~~~~~~~ 68 (258)
.||+++|++.-++.+-..|.+ .|++| .|+-..+.+.|.-+. ... ....++....|+.++.--.+...
T Consensus 27 ~~VaIVGaGPAGl~AA~~L~~~~~g~~V-tv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg~d 105 (491)
T PLN02852 27 LHVCVVGSGPAGFYTADKLLKAHDGARV-DIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGRD 105 (491)
T ss_pred CcEEEECccHHHHHHHHHHHhhCCCCeE-EEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEECcc
Confidence 489999999999999999986 46776 566665555542110 011 12344566677776542222221
Q ss_pred cccccchHHHHHHHhcCCCcEEEEE
Q psy5230 69 GKYHKIANETHKLLNKIEFDIMIVM 93 (258)
Q Consensus 69 ~~~~~~~~~~~~~l~~~~~Dl~vv~ 93 (258)
-..+.|+. .+|.+|++
T Consensus 106 --------vtl~~L~~-~yDaVIlA 121 (491)
T PLN02852 106 --------VSLSELRD-LYHVVVLA 121 (491)
T ss_pred --------ccHHHHhh-hCCEEEEe
Confidence 22344543 68988887
No 405
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=38.96 E-value=89 Score=32.55 Aligned_cols=53 Identities=17% Similarity=0.131 Sum_probs=40.3
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEcc
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQP 62 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~ 62 (258)
+|+++|++..++.+-..|.+.|.+++.|+...+.. ...+.+..+++||+++.-
T Consensus 319 ~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~--------~~~l~~~L~~~GV~i~~~ 371 (985)
T TIGR01372 319 RIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV--------SPEARAEARELGIEVLTG 371 (985)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch--------hHHHHHHHHHcCCEEEcC
Confidence 68999999999999999999888888888643221 123566678889998753
No 406
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=38.96 E-value=2.4e+02 Score=24.37 Aligned_cols=76 Identities=11% Similarity=0.032 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhCCCcEEEEEcCCCC-CCCCCCccCCcHHHHHHHHCCCcE--EccCCCCCCcccccchHHHHHHHhc-CC
Q psy5230 11 SAAAILDTLYNSEHNIVLILTKPDL-HSGRGMKLNFSPVKKYALKHSIKI--IQPISLKLNGKYHKIANETHKLLNK-IE 86 (258)
Q Consensus 11 fa~~~L~~L~~~~~~i~~Vvt~pd~-~~gr~~~~~~~~v~~~A~~~gIpv--~~~~~~~~~~~~~~~~~~~~~~l~~-~~ 86 (258)
-+....+.|++.||.-+++++.++. ... .....-..+.+.++|+++ +..........+ ..+.++|+. ..
T Consensus 166 ~~~~a~~~L~~~G~r~I~~i~~~~~~~~~---~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~ 238 (328)
T PRK11303 166 DAEMLAESLLKFPAESILLLGALPELSVS---FEREQGFRQALKDDPREVHYLYANSFEREAGA----QLFEKWLETHPM 238 (328)
T ss_pred HHHHHHHHHHHCCCCeEEEEeCccccccH---HHHHHHHHHHHHHcCCCceEEEeCCCChHHHH----HHHHHHHcCCCC
Confidence 3456778899999988888875432 111 112234677788889863 111112111000 033344544 35
Q ss_pred CcEEEEE
Q psy5230 87 FDIMIVM 93 (258)
Q Consensus 87 ~Dl~vv~ 93 (258)
||.+++.
T Consensus 239 ~~ai~~~ 245 (328)
T PRK11303 239 PDALFTT 245 (328)
T ss_pred CCEEEEc
Confidence 7888877
No 407
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=38.90 E-value=88 Score=29.10 Aligned_cols=60 Identities=12% Similarity=0.010 Sum_probs=39.7
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEcc
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQP 62 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~ 62 (258)
|++++|.+..++++-..|.+.|.++. +++..+....+-.......+.+..+++||.++.-
T Consensus 174 ~vvVvGgG~~g~E~A~~l~~~g~~Vt-li~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~ 233 (462)
T PRK06416 174 SLVVIGGGYIGVEFASAYASLGAEVT-IVEALPRILPGEDKEISKLAERALKKRGIKIKTG 233 (462)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEE-EEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeC
Confidence 78999999999999999988888864 5554333322100001123566677899998754
No 408
>PRK10307 putative glycosyl transferase; Provisional
Probab=38.81 E-value=63 Score=29.34 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=22.3
Q ss_pred CeEEEEcC---CH------HHHHHHHHHHhCCCcEEEEEcCC
Q psy5230 1 MKIIFAGT---SI------SAAAILDTLYNSEHNIVLILTKP 33 (258)
Q Consensus 1 mrI~f~Gs---~~------fa~~~L~~L~~~~~~i~~Vvt~p 33 (258)
|||++++. |+ +.....+.|.+.||++..+.+.|
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~~G~~V~vit~~~ 42 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAARGHEVRVITAPP 42 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHHCCCeEEEEecCC
Confidence 89999874 33 33566778888899985444333
No 409
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=38.79 E-value=1.3e+02 Score=24.08 Aligned_cols=17 Identities=29% Similarity=0.266 Sum_probs=15.2
Q ss_pred HHHHHHhcCCCcEEEEE
Q psy5230 77 ETHKLLNKIEFDIMIVM 93 (258)
Q Consensus 77 ~~~~~l~~~~~Dl~vv~ 93 (258)
++++.++..+||+++|.
T Consensus 90 ~i~~~I~~~~pdiv~vg 106 (171)
T cd06533 90 EIIERINASGADILFVG 106 (171)
T ss_pred HHHHHHHHcCCCEEEEE
Confidence 67889999999999888
No 410
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=38.78 E-value=54 Score=28.55 Aligned_cols=28 Identities=11% Similarity=0.269 Sum_probs=25.0
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEE
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLI 29 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~V 29 (258)
||+++|.+.+|..+...|..+|++++.+
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~ 32 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIV 32 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEE
Confidence 7999999999999999999999887654
No 411
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=38.75 E-value=1.3e+02 Score=27.83 Aligned_cols=30 Identities=3% Similarity=-0.029 Sum_probs=18.9
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEc
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILT 31 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt 31 (258)
|++++|.+..+..+.+.|.+.|.+++.+-|
T Consensus 302 rv~i~~g~~~~~~~~~~l~elGmevv~~g~ 331 (421)
T cd01976 302 TVMLYVGGLRPRHYIGAYEDLGMEVVGTGY 331 (421)
T ss_pred EEEEECCCCcHHHHHHHHHHCCCEEEEEEe
Confidence 567776554455555666667888876544
No 412
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=38.70 E-value=47 Score=26.06 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=24.9
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcC
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTK 32 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~ 32 (258)
||.++|.+.+|..+-..|.++|+++ -+.++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V-~l~~~ 30 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEV-TLWGR 30 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEE-EEETS
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEE-EEEec
Confidence 7999999999998888888888776 45554
No 413
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=38.69 E-value=60 Score=24.61 Aligned_cols=30 Identities=10% Similarity=0.226 Sum_probs=24.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEE
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLIL 30 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vv 30 (258)
.||+++|.+..|..+++.|...|+.-+.++
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lv 32 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLV 32 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeec
Confidence 489999999999999999999887544443
No 414
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=38.46 E-value=1.8e+02 Score=24.98 Aligned_cols=80 Identities=21% Similarity=0.265 Sum_probs=49.7
Q ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHH-HHHHHCCCcEEccC-CCCCCcccccchHHHHH
Q psy5230 3 IIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVK-KYALKHSIKIIQPI-SLKLNGKYHKIANETHK 80 (258)
Q Consensus 3 I~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~-~~A~~~gIpv~~~~-~~~~~~~~~~~~~~~~~ 80 (258)
.+|++++.-...+.+.|.+. .-+.|||.. -++. .++...++.++-.. .++.. ...-+.+...+
T Consensus 94 tIflD~GtT~~~la~~L~~~--~~ltVvTNs------------l~ia~~l~~~~~~~villGG~~~~~-~~~~~G~~a~~ 158 (252)
T PRK10906 94 TLFIDIGTTPEAVAHALLNH--SNLRIVTNN------------LNVANTLMAKEDFRIILAGGELRSR-DGGIIGEATLD 158 (252)
T ss_pred EEEEcCcHHHHHHHHHhcCC--CCcEEEECc------------HHHHHHHhhCCCCEEEEECCEEecC-CCccCCHHHHH
Confidence 68999998888888888553 236888852 1233 34455667764322 11100 01123337789
Q ss_pred HHhcCCCcEEEEE--eeCC
Q psy5230 81 LLNKIEFDIMIVM--GILP 97 (258)
Q Consensus 81 ~l~~~~~Dl~vv~--~I~~ 97 (258)
.|+++.+|++|.. .|++
T Consensus 159 ~l~~~~~d~afi~~~Gi~~ 177 (252)
T PRK10906 159 FISQFRLDFGILGISGIDS 177 (252)
T ss_pred HHHhccCCEEEEcCCEECC
Confidence 9999999999877 5554
No 415
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=38.41 E-value=1.5e+02 Score=21.51 Aligned_cols=61 Identities=18% Similarity=0.140 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCC--CCCcccccchHHHHHHHhcCCC
Q psy5230 10 ISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISL--KLNGKYHKIANETHKLLNKIEF 87 (258)
Q Consensus 10 ~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~--~~~~~~~~~~~~~~~~l~~~~~ 87 (258)
+-..+..+.|.+.|+++.+ | + ...++-+++||++...... .++ ++.+.+++.++
T Consensus 13 ~~~~~~~~~l~~~G~~l~a--T-~-------------gT~~~l~~~gi~~~~v~~~~~~~~--------~i~~~i~~~~i 68 (110)
T cd01424 13 PEAVEIAKRLAELGFKLVA--T-E-------------GTAKYLQEAGIPVEVVNKVSEGRP--------NIVDLIKNGEI 68 (110)
T ss_pred hHHHHHHHHHHHCCCEEEE--c-h-------------HHHHHHHHcCCeEEEEeecCCCch--------hHHHHHHcCCe
Confidence 3566788888898998853 3 1 1467777899996433222 223 88899999999
Q ss_pred cEEEEEe
Q psy5230 88 DIMIVMG 94 (258)
Q Consensus 88 Dl~vv~~ 94 (258)
|++|..+
T Consensus 69 d~vIn~~ 75 (110)
T cd01424 69 QLVINTP 75 (110)
T ss_pred EEEEECC
Confidence 9998874
No 416
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=37.98 E-value=1.1e+02 Score=27.80 Aligned_cols=29 Identities=10% Similarity=0.142 Sum_probs=24.2
Q ss_pred CeEEEEc-CCHHHHHHHHHHHhCCCcEEEE
Q psy5230 1 MKIIFAG-TSISAAAILDTLYNSEHNIVLI 29 (258)
Q Consensus 1 mrI~f~G-s~~fa~~~L~~L~~~~~~i~~V 29 (258)
+||+++| .+.+|...-..|.++|+++.++
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~~V~~~ 128 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGYQVRIL 128 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCCeEEEe
Confidence 5899998 8999999999999988876433
No 417
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.86 E-value=1.7e+02 Score=26.36 Aligned_cols=81 Identities=15% Similarity=0.071 Sum_probs=49.2
Q ss_pred CeEEE-EcCC---HHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCc---c---
Q psy5230 1 MKIIF-AGTS---ISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNG---K--- 70 (258)
Q Consensus 1 mrI~f-~Gs~---~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~---~--- 70 (258)
|||.| +|++ .|...++..|-+.||+++ +|.-|+ -.+.++-...|+|+-.-.+-.... +
T Consensus 1 mkVwiDI~n~~hvhfFk~lI~elekkG~ev~--iT~rd~----------~~v~~LLd~ygf~~~~Igk~g~~tl~~Kl~~ 68 (346)
T COG1817 1 MKVWIDIGNPPHVHFFKNLIWELEKKGHEVL--ITCRDF----------GVVTELLDLYGFPYKSIGKHGGVTLKEKLLE 68 (346)
T ss_pred CeEEEEcCCcchhhHHHHHHHHHHhCCeEEE--EEEeec----------CcHHHHHHHhCCCeEeecccCCccHHHHHHH
Confidence 77777 5665 577788888888888884 443222 237888999999875433221000 0
Q ss_pred cccchHHHHHHHhcCCCcEEEEE
Q psy5230 71 YHKIANETHKLLNKIEFDIMIVM 93 (258)
Q Consensus 71 ~~~~~~~~~~~l~~~~~Dl~vv~ 93 (258)
+-+....+.+.+.+++||+++-.
T Consensus 69 ~~eR~~~L~ki~~~~kpdv~i~~ 91 (346)
T COG1817 69 SAERVYKLSKIIAEFKPDVAIGK 91 (346)
T ss_pred HHHHHHHHHHHHhhcCCceEeec
Confidence 00011134466788999999875
No 418
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=37.85 E-value=81 Score=22.46 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=24.9
Q ss_pred eEEEEcCCHHHHHHHHHHH-hCCCcEEEEEcCCCCCCC
Q psy5230 2 KIIFAGTSISAAAILDTLY-NSEHNIVLILTKPDLHSG 38 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~-~~~~~i~~Vvt~pd~~~g 38 (258)
|+++.|-+..+...+..+. ..++.+.+++-.-++..|
T Consensus 5 ~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G 42 (96)
T PF02629_consen 5 NVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIG 42 (96)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTT
T ss_pred eEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccC
Confidence 6899999999776664443 347888877764333444
No 419
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=37.79 E-value=92 Score=29.10 Aligned_cols=59 Identities=19% Similarity=0.112 Sum_probs=38.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEc
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQ 61 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~ 61 (258)
+|+++|.+..++++-..|.+.|.++. ++...++............+.+..+++||.++.
T Consensus 174 ~vvVIGgG~ig~E~A~~l~~~G~~Vt-lv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~ 232 (466)
T PRK07818 174 SIVIAGAGAIGMEFAYVLKNYGVDVT-IVEFLDRALPNEDAEVSKEIAKQYKKLGVKILT 232 (466)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEE-EEecCCCcCCccCHHHHHHHHHHHHHCCCEEEE
Confidence 68999999999999999988887765 444333322111000112355666788999874
No 420
>KOG3349|consensus
Probab=37.72 E-value=1.9e+02 Score=23.22 Aligned_cols=54 Identities=20% Similarity=0.319 Sum_probs=33.3
Q ss_pred CeEEE--EcCCHH--------HHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEE
Q psy5230 1 MKIIF--AGTSIS--------AAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60 (258)
Q Consensus 1 mrI~f--~Gs~~f--------a~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~ 60 (258)
|+.+| .||..| +-+.++.|.+.|+.-+-+ ..|||+...+.+...+-.-.|+.+.
T Consensus 3 ~~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLii------Q~Grg~~~~~d~~~~~~k~~gl~id 66 (170)
T KOG3349|consen 3 LMTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLII------QIGRGQPFFGDPIDLIRKNGGLTID 66 (170)
T ss_pred ceEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEE------EecCCccCCCCHHHhhcccCCeEEE
Confidence 34555 477655 346778888877654222 2477777777777777655566653
No 421
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=37.71 E-value=58 Score=28.35 Aligned_cols=29 Identities=14% Similarity=0.090 Sum_probs=25.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEE
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLI 29 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~V 29 (258)
+||+|+|.+.++...-..|..+|+++..+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~ 33 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLN 33 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEE
Confidence 47999999999999999999999988654
No 422
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=37.66 E-value=54 Score=27.91 Aligned_cols=48 Identities=21% Similarity=0.133 Sum_probs=32.2
Q ss_pred EEEcCCHHHHHHHHHHHhC----CCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCC
Q psy5230 4 IFAGTSISAAAILDTLYNS----EHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPIS 64 (258)
Q Consensus 4 ~f~Gs~~fa~~~L~~L~~~----~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~ 64 (258)
+=+||++-+...++.|-++ +.++.+|-|.. .-..+|+++|||+...+.
T Consensus 25 vGLGTGSTv~~~i~~L~~~~~~~~l~i~~VptS~-------------~t~~~a~~~Gipl~~l~~ 76 (228)
T PRK13978 25 LGIGTGSTMELLLPQMAQLIKERGYNITGVCTSN-------------KIAFLAKELGIKICEIND 76 (228)
T ss_pred EEeCchHHHHHHHHHHHHHhhccCccEEEEeCcH-------------HHHHHHHHcCCcEechhh
Confidence 3358888777777777653 24566664421 247899999999987654
No 423
>PLN00198 anthocyanidin reductase; Provisional
Probab=37.59 E-value=65 Score=28.39 Aligned_cols=32 Identities=13% Similarity=0.150 Sum_probs=25.5
Q ss_pred CeEEEEc-CCHHHHHHHHHHHhCCCcEEEEEcC
Q psy5230 1 MKIIFAG-TSISAAAILDTLYNSEHNIVLILTK 32 (258)
Q Consensus 1 mrI~f~G-s~~fa~~~L~~L~~~~~~i~~Vvt~ 32 (258)
|+|++.| ++-.|..+.+.|++.|+++++++..
T Consensus 10 ~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~ 42 (338)
T PLN00198 10 KTACVIGGTGFLASLLIKLLLQKGYAVNTTVRD 42 (338)
T ss_pred CeEEEECCchHHHHHHHHHHHHCCCEEEEEECC
Confidence 5788898 5568999999999999988766543
No 424
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=37.43 E-value=64 Score=28.43 Aligned_cols=30 Identities=20% Similarity=0.120 Sum_probs=25.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEE
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLIL 30 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vv 30 (258)
|||+++|.+..|.-.--.|.+.|+++..|.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~ 32 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLIL 32 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEE
Confidence 899999999999988888888888876553
No 425
>PRK14974 cell division protein FtsY; Provisional
Probab=37.42 E-value=88 Score=28.26 Aligned_cols=82 Identities=15% Similarity=0.193 Sum_probs=43.0
Q ss_pred eEEEEcCCHHHHHHH-----HHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchH
Q psy5230 2 KIIFAGTSISAAAIL-----DTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIAN 76 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L-----~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~ 76 (258)
.|+|.|.+..|..++ ..|.+.|+.+ ++++ .|.- |.. -...++.+|.+.|+|++....-.++. .++.
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~g~~V-~li~-~Dt~--R~~--a~eqL~~~a~~lgv~v~~~~~g~dp~---~v~~ 212 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKNGFSV-VIAA-GDTF--RAG--AIEQLEEHAERLGVKVIKHKYGADPA---AVAY 212 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeE-EEec-CCcC--cHH--HHHHHHHHHHHcCCceecccCCCCHH---HHHH
Confidence 377888887776652 3344445555 4454 2321 110 11236778999999997533222210 1111
Q ss_pred HHHHHHhcCCCcEEEE
Q psy5230 77 ETHKLLNKIEFDIMIV 92 (258)
Q Consensus 77 ~~~~~l~~~~~Dl~vv 92 (258)
+.++..+..+.|++++
T Consensus 213 ~ai~~~~~~~~DvVLI 228 (336)
T PRK14974 213 DAIEHAKARGIDVVLI 228 (336)
T ss_pred HHHHHHHhCCCCEEEE
Confidence 3344555667896654
No 426
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=37.27 E-value=49 Score=26.17 Aligned_cols=31 Identities=16% Similarity=0.223 Sum_probs=26.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhC-CCcEEEEEc
Q psy5230 1 MKIIFAGTSISAAAILDTLYNS-EHNIVLILT 31 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~-~~~i~~Vvt 31 (258)
|||++-|-+-++..+|+.+..+ ..++++|-.
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~~~~evvaInd 32 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQPDIEVVAIND 32 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTSTTEEEEEEEE
T ss_pred CEEEEECCCcccHHHHHhhcccceEEEEEEec
Confidence 7999999999999999999965 378888754
No 427
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=37.25 E-value=1.7e+02 Score=25.43 Aligned_cols=81 Identities=10% Similarity=0.135 Sum_probs=49.0
Q ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccC-CCCCCcccccchHHHHHH
Q psy5230 3 IIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPI-SLKLNGKYHKIANETHKL 81 (258)
Q Consensus 3 I~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~-~~~~~~~~~~~~~~~~~~ 81 (258)
.+|++++.-...+.+.|.+. .-+-|||..- .-+..++...++.++-.. .++.. ...-..+...+.
T Consensus 109 ~Ifld~GtT~~~la~~L~~~--~~ltVvTnsl-----------~ia~~l~~~~~~~v~llGG~~~~~-~~~~~G~~a~~~ 174 (269)
T PRK09802 109 RVILDSGTTTFEIARLMRKH--TDVIAMTNGM-----------NVANALLEAEGVELLMTGGHLRRQ-SQSFYGDQAEQS 174 (269)
T ss_pred EEEECCchHHHHHHHhcCcC--CCeEEEeCCH-----------HHHHHHHhCCCCEEEEECCEEecC-CCceECHHHHHH
Confidence 68999998888888888442 2368898521 112334445577765322 11100 001223377789
Q ss_pred HhcCCCcEEEEE--eeCC
Q psy5230 82 LNKIEFDIMIVM--GILP 97 (258)
Q Consensus 82 l~~~~~Dl~vv~--~I~~ 97 (258)
|+++.+|.+|.. .|+.
T Consensus 175 l~~~~~d~afig~~gi~~ 192 (269)
T PRK09802 175 LQNYHFDMLFLGVDAIDL 192 (269)
T ss_pred HHhccCCEEEEcCceecC
Confidence 999999999877 5553
No 428
>PRK07340 ornithine cyclodeaminase; Validated
Probab=37.19 E-value=1.7e+02 Score=25.87 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=24.7
Q ss_pred eEEEEcCCHHHHHHHHHHHh-CCCcEEEEEcC
Q psy5230 2 KIIFAGTSISAAAILDTLYN-SEHNIVLILTK 32 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~-~~~~i~~Vvt~ 32 (258)
+++++|++..|...++++.. .+.+-+.|+.+
T Consensus 127 ~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r 158 (304)
T PRK07340 127 DLLLIGTGVQARAHLEAFAAGLPVRRVWVRGR 158 (304)
T ss_pred EEEEECCcHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 78999999999999999976 45666666653
No 429
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=37.10 E-value=82 Score=29.22 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=38.4
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCC-ccCCcHHHHHHHHCCCcEEc
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGM-KLNFSPVKKYALKHSIKIIQ 61 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~-~~~~~~v~~~A~~~gIpv~~ 61 (258)
+|+++|.+..++++-..|.+.|.++. +++..++.. +.. ......+.+..+++||.++.
T Consensus 150 ~vvViGgG~ig~E~A~~l~~~g~~Vt-li~~~~~l~-~~~d~~~~~~l~~~l~~~gI~i~~ 208 (438)
T PRK13512 150 KALVVGAGYISLEVLENLYERGLHPT-LIHRSDKIN-KLMDADMNQPILDELDKREIPYRL 208 (438)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEE-EEecccccc-hhcCHHHHHHHHHHHHhcCCEEEE
Confidence 68999999999999999988887764 455433222 111 00112456667788999864
No 430
>COG4607 CeuA ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=37.09 E-value=1e+02 Score=27.46 Aligned_cols=66 Identities=21% Similarity=0.182 Sum_probs=36.4
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHH
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKL 81 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~ 81 (258)
||+++.-+ .|+.|-+.|.+..+|= |. +..|.-+..|... .+-...++..+ + .|.
T Consensus 60 kVvv~D~g-----aLD~ld~lGve~~~v~--~~-------~~~P~yL~~y~~d---ky~nvGtlfEP--------D-~Ea 113 (320)
T COG4607 60 KVVVLDLG-----ALDTLDALGVEVVAVG--PG-------KNLPAYLQKYKDD---KYANVGTLFEP--------D-YEA 113 (320)
T ss_pred eEEEecch-----hhhhHHHhCCcccccc--CC-------CCccHHHHHhccC---CccccCcccCC--------C-HHH
Confidence 45555443 5666666688875552 21 2234455555543 11122334333 3 378
Q ss_pred HhcCCCcEEEEE
Q psy5230 82 LNKIEFDIMIVM 93 (258)
Q Consensus 82 l~~~~~Dl~vv~ 93 (258)
|...+|||||+-
T Consensus 114 i~a~kPdLIIig 125 (320)
T COG4607 114 IAAAKPDLIIIG 125 (320)
T ss_pred HHhcCCCEEEEC
Confidence 888999999877
No 431
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=37.08 E-value=1.2e+02 Score=28.28 Aligned_cols=64 Identities=16% Similarity=0.100 Sum_probs=38.0
Q ss_pred HHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHHHhcCCCcEEE
Q psy5230 15 ILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKLLNKIEFDIMI 91 (258)
Q Consensus 15 ~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dl~v 91 (258)
.++.|.+.|-++...-|.|-. ....|...-.+.||+||.......+ +|+ +.++...+.+||+++
T Consensus 48 l~~~L~~~GA~v~~~~~np~s--------tqd~vaaaL~~~gi~v~a~~~~~~~-ey~----~~~~~~l~~~p~~ii 111 (406)
T TIGR00936 48 LIETLVAGGAEVAWTSCNPLS--------TQDDVAAALAKAGIPVFAWRGETNE-EYY----WAIEQVLDHEPNIII 111 (406)
T ss_pred HHHHHHHcCCEEEEEccCCcc--------ccHHHHHHHHhCCceEEEecCCCHH-HHH----HHHHHHhcCCCCEEE
Confidence 445666667676444444432 3345666666889999976554433 233 334455567899885
No 432
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=37.06 E-value=2.3e+02 Score=26.24 Aligned_cols=84 Identities=17% Similarity=0.141 Sum_probs=46.2
Q ss_pred EEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHHHh
Q psy5230 4 IFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKLLN 83 (258)
Q Consensus 4 ~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~l~ 83 (258)
++||.+.+. .+-+.+.+.+..-+.|||.+.-.. .-....+.+..++.|+.+...+.+..+..+ ....+..+..+
T Consensus 4 i~fG~g~~~-~l~~~l~~~g~~~vlivt~~~~~~----~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~-~~v~~~~~~~~ 77 (414)
T cd08190 4 IRFGPGVTA-EVGMDLKNLGARRVCLVTDPNLAQ----LPPVKVVLDSLEAAGINFEVYDDVRVEPTD-ESFKDAIAFAK 77 (414)
T ss_pred EEECcCHHH-HHHHHHHHcCCCeEEEEECcchhh----cchHHHHHHHHHHcCCcEEEeCCCCCCcCH-HHHHHHHHHHH
Confidence 567887432 233444444666778888542111 001234666667788887544333211001 11225567788
Q ss_pred cCCCcEEEEE
Q psy5230 84 KIEFDIMIVM 93 (258)
Q Consensus 84 ~~~~Dl~vv~ 93 (258)
+.++|++|.+
T Consensus 78 ~~~~D~IIai 87 (414)
T cd08190 78 KGQFDAFVAV 87 (414)
T ss_pred hcCCCEEEEe
Confidence 8999999887
No 433
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=37.06 E-value=1.7e+02 Score=25.81 Aligned_cols=45 Identities=13% Similarity=0.123 Sum_probs=31.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCc-EEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcE
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHN-IVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKI 59 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~-i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv 59 (258)
+|++.|.+..+..+++.+...|.. ++++...++ -.++|++.|...
T Consensus 172 ~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~-------------~~~~a~~lGa~~ 217 (343)
T PRK09880 172 RVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPR-------------SLSLAREMGADK 217 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHH-------------HHHHHHHcCCcE
Confidence 578889998998888877777764 544433322 257888888753
No 434
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=36.94 E-value=44 Score=31.18 Aligned_cols=30 Identities=13% Similarity=0.111 Sum_probs=25.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEc
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILT 31 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt 31 (258)
|||.|+|.+..|.+.-..|.+ +|+++++=.
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~ 36 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDV 36 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeC
Confidence 899999999999999988766 588766543
No 435
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=36.91 E-value=1.2e+02 Score=25.85 Aligned_cols=53 Identities=13% Similarity=0.085 Sum_probs=36.2
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHC-CCcEEc
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKH-SIKIIQ 61 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~-gIpv~~ 61 (258)
+|+++|++..++++...|.+.+.++. +++..+... ....+.+..+++ |++++.
T Consensus 143 ~v~ViG~G~~~~e~a~~l~~~~~~V~-~v~~~~~~~------~~~~~~~~l~~~~gv~~~~ 196 (300)
T TIGR01292 143 EVAVVGGGDSAIEEALYLTRIAKKVT-LVHRRDKFR------AEKILLDRLRKNPNIEFLW 196 (300)
T ss_pred EEEEECCChHHHHHHHHHHhhcCEEE-EEEeCcccC------cCHHHHHHHHhCCCeEEEe
Confidence 78999999999999999988766664 444322211 123455666676 998864
No 436
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=36.82 E-value=1.7e+02 Score=28.75 Aligned_cols=29 Identities=21% Similarity=0.449 Sum_probs=24.0
Q ss_pred CeEEEEc-CCHHHHHHHHHHHhC--CCcEEEE
Q psy5230 1 MKIIFAG-TSISAAAILDTLYNS--EHNIVLI 29 (258)
Q Consensus 1 mrI~f~G-s~~fa~~~L~~L~~~--~~~i~~V 29 (258)
|||++.| |+-.|..+++.|+++ +++|+++
T Consensus 7 ~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~ 38 (668)
T PLN02260 7 KNILITGAAGFIASHVANRLIRNYPDYKIVVL 38 (668)
T ss_pred CEEEEECCCcHHHHHHHHHHHHhCCCCEEEEE
Confidence 7999999 677999999999987 4677654
No 437
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=36.50 E-value=1.3e+02 Score=27.86 Aligned_cols=31 Identities=19% Similarity=0.083 Sum_probs=25.7
Q ss_pred eEEEEcCCHHHHHHHHHHH-hCCCcEEEEEcC
Q psy5230 2 KIIFAGTSISAAAILDTLY-NSEHNIVLILTK 32 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~-~~~~~i~~Vvt~ 32 (258)
|++++|.+..+..+-+.|. +.|.+++.+.|.
T Consensus 303 rv~i~g~~~~~~~l~~~L~~elG~~vv~~~~~ 334 (430)
T cd01981 303 RAFVFGDATHVAAATRILAREMGFRVVGAGTY 334 (430)
T ss_pred eEEEEcChHHHHHHHHHHHHHcCCEEEeccCC
Confidence 7888888888888888887 679999887774
No 438
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=36.47 E-value=47 Score=28.90 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=23.9
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEE
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIV 27 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~ 27 (258)
||.|+|.+.+|......|.+.|+++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~ 26 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLH 26 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEE
Confidence 68999999999999999999998875
No 439
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=36.44 E-value=2.2e+02 Score=24.10 Aligned_cols=47 Identities=11% Similarity=0.168 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcE
Q psy5230 11 SAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKI 59 (258)
Q Consensus 11 fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv 59 (258)
.+....+.|++.||.-++.+..+..... ......-.++.++++|++.
T Consensus 105 ~~~~a~~~L~~~G~~~I~~i~~~~~~~~--~~~R~~gf~~a~~~~g~~~ 151 (269)
T cd06287 105 TARMLLEHLRAQGARQIALIVGSARRNS--YLEAEAAYRAFAAEHGMPP 151 (269)
T ss_pred HHHHHHHHHHHcCCCcEEEEeCCccccc--HHHHHHHHHHHHHHcCCCc
Confidence 3456778899999877777754321111 0112235677888899864
No 440
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=36.28 E-value=2e+02 Score=26.16 Aligned_cols=85 Identities=16% Similarity=0.146 Sum_probs=45.7
Q ss_pred EEEcCCHHHHHHHHHHHhC---CCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHH
Q psy5230 4 IFAGTSISAAAILDTLYNS---EHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHK 80 (258)
Q Consensus 4 ~f~Gs~~fa~~~L~~L~~~---~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~ 80 (258)
++||.+.+.. +-+.|.+. |.+-+.|||.+.... ..-....+.+..++.|+.+...........+ ....+..+
T Consensus 4 i~fG~g~~~~-l~~~l~~~~~~g~kr~livtd~~~~~---~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~-~~v~~~~~ 78 (383)
T cd08186 4 LYFGVGAIEK-IGEILKDLKSKGISKVLLVTGKSAYK---KSGAWDKVEPALDEHGIEYVLYNKVTPNPTV-DQVDEAAK 78 (383)
T ss_pred EEECcCHHHH-HHHHHHHhcccCCCEEEEEcCccHHh---hcChHHHHHHHHHHcCCeEEEeCCCCCCCCH-HHHHHHHH
Confidence 5678875433 22223332 556677888532110 0001134677778889877554433211111 11225567
Q ss_pred HHhcCCCcEEEEE
Q psy5230 81 LLNKIEFDIMIVM 93 (258)
Q Consensus 81 ~l~~~~~Dl~vv~ 93 (258)
.+++.++|++|.+
T Consensus 79 ~~~~~~~D~IIai 91 (383)
T cd08186 79 LGREFGAQAVIAI 91 (383)
T ss_pred HHHHcCCCEEEEe
Confidence 7888999998877
No 441
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=36.23 E-value=69 Score=27.42 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=25.6
Q ss_pred eEEEEcC-CHHHHHHHHHHHhCCCcEEEEEcCCC
Q psy5230 2 KIIFAGT-SISAAAILDTLYNSEHNIVLILTKPD 34 (258)
Q Consensus 2 rI~f~Gs-~~fa~~~L~~L~~~~~~i~~Vvt~pd 34 (258)
+|+++|. +..|..+.+.|++.|+++.+++-.|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~ 34 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSS 34 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 4677765 67999999999999999876655443
No 442
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=36.18 E-value=1.5e+02 Score=27.69 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=23.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCC
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKP 33 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~p 33 (258)
|||+++|+.--=..+...|.+++ .+..|++.|
T Consensus 1 mkVLviGsGgREHAiA~~la~s~-~v~~~~~ap 32 (428)
T COG0151 1 MKVLVIGSGGREHALAWKLAQSP-LVLYVYVAP 32 (428)
T ss_pred CeEEEEcCCchHHHHHHHHhcCC-ceeEEEEeC
Confidence 99999999987777778888764 444455544
No 443
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=36.09 E-value=1.3e+02 Score=28.24 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=34.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEc
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQ 61 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~ 61 (258)
.||+|+|.+..|..+.+.|++.|+++.+ + |+.. .+..++..+.|++++.
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G~~V~~--~--D~~~--------~~~~~~l~~~gi~~~~ 64 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELGCDVVV--A--DDNE--------TARHKLIEVTGVADIS 64 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCEEEE--E--CCCh--------HHHHHHHHhcCcEEEe
Confidence 3799999999999999999999875432 2 2211 1234456677998865
No 444
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=36.02 E-value=38 Score=24.57 Aligned_cols=30 Identities=13% Similarity=0.271 Sum_probs=25.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcC
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTK 32 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~ 32 (258)
+|+++|.+..|..-++.|++.|-++ -|+++
T Consensus 9 ~vlVvGgG~va~~k~~~Ll~~gA~v-~vis~ 38 (103)
T PF13241_consen 9 RVLVVGGGPVAARKARLLLEAGAKV-TVISP 38 (103)
T ss_dssp EEEEEEESHHHHHHHHHHCCCTBEE-EEEES
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEE-EEECC
Confidence 7999999999999999999998655 56653
No 445
>PRK10637 cysG siroheme synthase; Provisional
Probab=35.83 E-value=3.4e+02 Score=25.52 Aligned_cols=29 Identities=10% Similarity=0.123 Sum_probs=24.8
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEc
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILT 31 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt 31 (258)
||+++|.+..|..=++.|++.|.+| .||+
T Consensus 14 ~vlvvGgG~vA~rk~~~ll~~ga~v-~vis 42 (457)
T PRK10637 14 DCLLVGGGDVAERKARLLLDAGARL-TVNA 42 (457)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEE-EEEc
Confidence 7999999999999999999988665 4555
No 446
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=35.80 E-value=1.5e+02 Score=27.58 Aligned_cols=56 Identities=11% Similarity=0.024 Sum_probs=37.8
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEc
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQ 61 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~ 61 (258)
+|+++|.+..|+.+-..|...|.+-+.++...+... -.......+.+++.||.++.
T Consensus 275 ~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~----~~~~~~~~~~~~~~GV~i~~ 330 (457)
T PRK11749 275 RVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREE----MPASEEEVEHAKEEGVEFEW 330 (457)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCccc----CCCCHHHHHHHHHCCCEEEe
Confidence 789999999999999999888774456665422110 00112345677889999864
No 447
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=35.79 E-value=2.5e+02 Score=25.48 Aligned_cols=84 Identities=14% Similarity=0.084 Sum_probs=46.2
Q ss_pred EEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHHHh
Q psy5230 4 IFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKLLN 83 (258)
Q Consensus 4 ~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~l~ 83 (258)
++||.+... .+-+.|.+.+.+-+.|||.+.-.. .-....+....+++|+.+...+........ ....+..+.++
T Consensus 7 i~~G~g~l~-~l~~~l~~~~~~~~livt~~~~~~----~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~-~~v~~~~~~~~ 80 (376)
T cd08193 7 IVFGAGSLA-RLGELLAALGAKRVLVVTDPGILK----AGLIDPLLASLEAAGIEVTVFDDVEADPPE-AVVEAAVEAAR 80 (376)
T ss_pred EEECcCHHH-HHHHHHHHcCCCeEEEEcCcchhh----CccHHHHHHHHHHcCCeEEEECCCCCCcCH-HHHHHHHHHHH
Confidence 577887543 222333334556677888532100 112245777778888877544333211011 11225667788
Q ss_pred cCCCcEEEEE
Q psy5230 84 KIEFDIMIVM 93 (258)
Q Consensus 84 ~~~~Dl~vv~ 93 (258)
+.++|.+|.+
T Consensus 81 ~~~~D~IIai 90 (376)
T cd08193 81 AAGADGVIGF 90 (376)
T ss_pred hcCCCEEEEe
Confidence 8999999877
No 448
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=35.74 E-value=1.6e+02 Score=24.45 Aligned_cols=41 Identities=24% Similarity=0.315 Sum_probs=28.4
Q ss_pred HHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEc
Q psy5230 12 AAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQ 61 (258)
Q Consensus 12 a~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~ 61 (258)
|...+..+..++-.++.|-|.+.. ...|+++|+..|.+++.
T Consensus 45 A~~~i~~i~~~~~~ILfV~t~~~~---------~~~v~~~a~~~~~~yi~ 85 (211)
T PF00318_consen 45 ALKFIKSIAKNGGKILFVGTKPQA---------SKIVKKFAKRTGSFYIN 85 (211)
T ss_dssp HHHHHHHHHTTTGGEEEEECSTTH---------HHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHhhcCCCeEEEEEcchHH---------HHHHHHHHHHhCCCccC
Confidence 455666666667788777775432 34788999999888763
No 449
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=35.73 E-value=1.5e+02 Score=31.22 Aligned_cols=21 Identities=10% Similarity=0.183 Sum_probs=19.4
Q ss_pred eEEEEcCCHHHHHHHHHHHhC
Q psy5230 2 KIIFAGTSISAAAILDTLYNS 22 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~ 22 (258)
||+++|.+..|.+..+.|.+.
T Consensus 571 rIlVLGAG~VG~~~a~~La~~ 591 (1042)
T PLN02819 571 NVLILGAGRVCRPAAEYLASV 591 (1042)
T ss_pred cEEEECCCHHHHHHHHHHHhC
Confidence 799999999999999999875
No 450
>PRK06057 short chain dehydrogenase; Provisional
Probab=35.63 E-value=1.8e+02 Score=24.23 Aligned_cols=28 Identities=18% Similarity=0.090 Sum_probs=22.7
Q ss_pred eEEEEcC-CHHHHHHHHHHHhCCCcEEEE
Q psy5230 2 KIIFAGT-SISAAAILDTLYNSEHNIVLI 29 (258)
Q Consensus 2 rI~f~Gs-~~fa~~~L~~L~~~~~~i~~V 29 (258)
+|++.|. ...|..+.+.|.+.|++++.+
T Consensus 9 ~vlItGasggIG~~~a~~l~~~G~~v~~~ 37 (255)
T PRK06057 9 VAVITGGGSGIGLATARRLAAEGATVVVG 37 (255)
T ss_pred EEEEECCCchHHHHHHHHHHHcCCEEEEE
Confidence 5777877 568999999999999887555
No 451
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=35.63 E-value=2e+02 Score=22.04 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhCCCcEEEEEcCCCC
Q psy5230 11 SAAAILDTLYNSEHNIVLILTKPDL 35 (258)
Q Consensus 11 fa~~~L~~L~~~~~~i~~Vvt~pd~ 35 (258)
.|...-++|++.||+++-|+-.-|.
T Consensus 19 ~A~~fA~all~~gh~~v~iFly~Dg 43 (126)
T COG1553 19 SALRFAEALLEQGHELVRLFLYQDG 43 (126)
T ss_pred HHHHHHHHHHHcCCeEEEEEEeecc
Confidence 4556668888888888877765543
No 452
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=35.62 E-value=1.2e+02 Score=28.17 Aligned_cols=78 Identities=13% Similarity=0.130 Sum_probs=51.2
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcE-EEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCC---CCcccccchHH
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNI-VLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLK---LNGKYHKIANE 77 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i-~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~---~~~~~~~~~~~ 77 (258)
+|-+.|...-+..+++.|.++|+.+ ++|+..-|. =.+.|...|+++...+.+. +. .
T Consensus 269 ~v~v~~~~~~~~~~~~~L~~~g~~v~~g~l~~~d~------------d~~~a~~l~~~~~~~~pf~~i~~~--------~ 328 (402)
T PRK09536 269 RVHVVGGGQPAARAVSRLVAAGASVSVGPVPEGDT------------AAETAARVGCEAVTVPPFKPIEDS--------T 328 (402)
T ss_pred eEEEECCCCcHHHHHHHHHHCCCeEEEecCcCcch------------hHHHHHHcCCCEEeeCCCCCCCHH--------H
Confidence 3566788888889999999999886 466654332 2578999999997644432 22 2
Q ss_pred HHHHHhc-CCCcEEEEE--eeCCCC
Q psy5230 78 THKLLNK-IEFDIMIVM--GILPED 99 (258)
Q Consensus 78 ~~~~l~~-~~~Dl~vv~--~I~~~d 99 (258)
+.+...- .++|.+|++ |+.++.
T Consensus 329 ~~~a~~~~~~~~~vi~~~~~~g~~~ 353 (402)
T PRK09536 329 RAEATDLIIAADAVVAAGVAAAARS 353 (402)
T ss_pred HHHHHHHHHhCCEEEECCCccCCCC
Confidence 2222222 268999887 555554
No 453
>KOG3075|consensus
Probab=35.57 E-value=79 Score=27.35 Aligned_cols=49 Identities=18% Similarity=0.197 Sum_probs=32.3
Q ss_pred eEEEEcCCHHHHHHHHHH---HhCC--CcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccC
Q psy5230 2 KIIFAGTSISAAAILDTL---YNSE--HNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPI 63 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L---~~~~--~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~ 63 (258)
.|+++||++-.....+.| +..+ +++++| |..-+ -++++.++|||+..++
T Consensus 44 ~ViGiGsGstv~~~v~~i~q~l~~~~l~~vvgV---Pts~~----------s~q~~~~~gi~l~~~d 97 (261)
T KOG3075|consen 44 MVIGIGSGSTVVYAVDRIGQLLFDGDLGNVVGV---PTSFR----------SAQLALEYGIPLSDLD 97 (261)
T ss_pred eEEEecCccHHHHHHHHHHHHhcCCCcCceEec---ccchh----------hHHHHHhcCCccccCC
Confidence 478999997666555555 4333 456555 32222 2899999999997654
No 454
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=35.47 E-value=1.4e+02 Score=25.26 Aligned_cols=49 Identities=10% Similarity=0.112 Sum_probs=33.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCC--CcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcE
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSE--HNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKI 59 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~--~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv 59 (258)
.|++++||+..+-..+-.++..| .|. ++...-|. . |+=...|.+.|++.
T Consensus 5 ~kvaiigsgni~tdlm~k~lr~g~~le~-~~mvgidp-~--------sdglaraarlgv~t 55 (310)
T COG4569 5 RKVAIIGSGNIGTDLMIKILRHGQHLEM-AVMVGIDP-Q--------SDGLARAARLGVAT 55 (310)
T ss_pred ceEEEEccCcccHHHHHHHHhcCCcccc-eeEEccCC-C--------ccHHHHHHhcCCcc
Confidence 48999999999999998888875 343 33332221 1 23356777888875
No 455
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=35.41 E-value=2.8e+02 Score=27.82 Aligned_cols=84 Identities=12% Similarity=0.109 Sum_probs=51.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCC---CCc--cCCcHH----HHHHHHCCCcEEccCCCCCCccc
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGR---GMK--LNFSPV----KKYALKHSIKIIQPISLKLNGKY 71 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr---~~~--~~~~~v----~~~A~~~gIpv~~~~~~~~~~~~ 71 (258)
+||+++|.+..|+.+-..|...|+++ .|+..-+.+.|. |-. ..+..+ .++.++.|+.+..-..+...
T Consensus 432 ~~V~IIGaGpAGl~aA~~l~~~G~~V-~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~~~--- 507 (752)
T PRK12778 432 KKVAVIGSGPAGLSFAGDLAKRGYDV-TVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGKT--- 507 (752)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeE-EEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECCc---
Confidence 58999999999999999999999886 455542222221 100 001111 23466789887653322211
Q ss_pred ccchHHHHHHHhcCCCcEEEEE
Q psy5230 72 HKIANETHKLLNKIEFDIMIVM 93 (258)
Q Consensus 72 ~~~~~~~~~~l~~~~~Dl~vv~ 93 (258)
-.++.+....+|.+|++
T Consensus 508 -----v~~~~l~~~~ydavvlA 524 (752)
T PRK12778 508 -----ITIEELEEEGFKGIFIA 524 (752)
T ss_pred -----CCHHHHhhcCCCEEEEe
Confidence 12345566779998888
No 456
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=35.36 E-value=81 Score=24.02 Aligned_cols=55 Identities=18% Similarity=0.169 Sum_probs=33.0
Q ss_pred CeEEEEcCCH--------HHHHHHHHHHhCCC---cEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEcc
Q psy5230 1 MKIIFAGTSI--------SAAAILDTLYNSEH---NIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQP 62 (258)
Q Consensus 1 mrI~f~Gs~~--------fa~~~L~~L~~~~~---~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~ 62 (258)
||.+++|-+- ....+.+.|.+.+. .|..+.| +|... ....+.+.|.+.|+|+...
T Consensus 1 ~~~~~vGIGcr~~~~~e~i~~ai~~~L~~~~l~~~si~~las-i~~K~------~E~~L~~~A~~lg~pl~~~ 66 (126)
T PRK07027 1 MMRVALGIGCRRGVPAEQIEAAIRAALAQRPLASADVRVVAT-LDLKA------DEAGLLALCARHGWPLRAF 66 (126)
T ss_pred CCcEEEeeccCCCCCHHHHHHHHHHHHHHcCCCHHHhheeEe-hhhhc------CCHHHHHHHHHhCCCeEEe
Confidence 6777776652 33334444545443 3445554 44322 4467999999999998654
No 457
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=35.32 E-value=1.5e+02 Score=30.63 Aligned_cols=75 Identities=9% Similarity=0.154 Sum_probs=45.7
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHH
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKL 81 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~ 81 (258)
|++++|.+.......+.|.+.|.+++++-++- ... .....++++.. .+..++.-. +.. ++.+.
T Consensus 322 rv~i~~g~~~~~~la~~l~elGmevv~~g~~~-~~~-----~d~~~~~~~~~-~~~~vi~~~--d~~--------el~~~ 384 (917)
T PRK14477 322 RVVLFTGGVKTWSMVNALRELGVEVLAAGTQN-STL-----EDFARMKALMH-KDAHIIEDT--STA--------GLLRV 384 (917)
T ss_pred EEEEECCCchHHHHHHHHHHCCCEEEEEcCCC-CCH-----HHHHHHHHhcC-CCCEEEECC--CHH--------HHHHH
Confidence 78889988888889999999999997754421 100 00001122221 233333221 122 77788
Q ss_pred HhcCCCcEEEEE
Q psy5230 82 LNKIEFDIMIVM 93 (258)
Q Consensus 82 l~~~~~Dl~vv~ 93 (258)
++..+||+++.-
T Consensus 385 i~~~~pDLlig~ 396 (917)
T PRK14477 385 MREKMPDLIVAG 396 (917)
T ss_pred HHhcCCCEEEec
Confidence 899999999865
No 458
>PRK12939 short chain dehydrogenase; Provisional
Probab=35.28 E-value=1.5e+02 Score=24.29 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=23.6
Q ss_pred CeEEEEcC-CHHHHHHHHHHHhCCCcEEEE
Q psy5230 1 MKIIFAGT-SISAAAILDTLYNSEHNIVLI 29 (258)
Q Consensus 1 mrI~f~Gs-~~fa~~~L~~L~~~~~~i~~V 29 (258)
+++++.|. ...|..+.+.|.+.|++++.+
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~ 37 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFN 37 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEE
Confidence 36788875 579999999999999987655
No 459
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=35.26 E-value=66 Score=26.81 Aligned_cols=40 Identities=10% Similarity=0.152 Sum_probs=27.1
Q ss_pred CCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccC
Q psy5230 22 SEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPI 63 (258)
Q Consensus 22 ~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~ 63 (258)
+|...++|+|---.+.| ....-..+.+||++||||++.-.
T Consensus 153 AGl~Pa~VicEi~~~dG--~mar~~~~~~fa~~h~l~~iti~ 192 (203)
T COG0108 153 AGLKPAGVICEIMNDDG--TMARLPELEEFAKEHGLPVITIE 192 (203)
T ss_pred cCCCCcEEEEEEeCCCc--cccChHHHHHHHHHcCCcEEEHH
Confidence 47788888884222222 23344579999999999998753
No 460
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=35.26 E-value=97 Score=28.45 Aligned_cols=63 Identities=19% Similarity=0.122 Sum_probs=37.8
Q ss_pred HHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHHHhcCCCcEEE
Q psy5230 17 DTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKLLNKIEFDIMI 91 (258)
Q Consensus 17 ~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dl~v 91 (258)
+.|.+.|-++..-=|.|-+ .+......++.+.|||||-...-.. .+|+ +.++.+-+..||+++
T Consensus 63 etL~a~GAeV~~a~cNplS-------TqD~vaaAl~~~~GipVfA~kGe~~-eeY~----~~~~~vl~~~p~iii 125 (420)
T COG0499 63 ETLKAGGAEVRWASCNPLS-------TQDDVAAALAAKEGIPVFAWKGETL-EEYY----EAIDQVLDWEPNIII 125 (420)
T ss_pred HHHHhcCceEEEecCCCCc-------ccHHHHHHHhhccCceEEEEcCCCH-HHHH----HHHHHHhCcCCCEEE
Confidence 3444445566544444422 1233455666777999998654433 3454 566777788899885
No 461
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=35.26 E-value=2e+02 Score=26.92 Aligned_cols=75 Identities=19% Similarity=0.298 Sum_probs=42.4
Q ss_pred CeEEEEcCCH-HHHHHHHHHHhCC-----CcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccc
Q psy5230 1 MKIIFAGTSI-SAAAILDTLYNSE-----HNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKI 74 (258)
Q Consensus 1 mrI~f~Gs~~-fa~~~L~~L~~~~-----~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~ 74 (258)
|||+|+|-++ |+..+++.|+... -+++.+ |-..+| .+....-.+.++.++|.++ +...- .
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~----DId~~r-l~~v~~l~~~~~~~~g~~~-~v~~T--t------ 66 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLY----DIDAER-QEKVAEAVKILFKENYPEI-KFVYT--T------ 66 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEE----CCCHHH-HHHHHHHHHHHHHhhCCCe-EEEEE--C------
Confidence 8999998876 7777888888752 233333 222222 1222234566677777664 21111 1
Q ss_pred hHHHHHHHhcCCCcEEEEE
Q psy5230 75 ANETHKLLNKIEFDIMIVM 93 (258)
Q Consensus 75 ~~~~~~~l~~~~~Dl~vv~ 93 (258)
+..+.|+ .+|++|+.
T Consensus 67 --dr~eAl~--gADfVi~~ 81 (437)
T cd05298 67 --DPEEAFT--DADFVFAQ 81 (437)
T ss_pred --CHHHHhC--CCCEEEEE
Confidence 3445665 47888776
No 462
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=35.25 E-value=2.2e+02 Score=22.33 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=17.9
Q ss_pred CeEEEEcCCHHHHHH----HHHHHhCCCcEEEE
Q psy5230 1 MKIIFAGTSISAAAI----LDTLYNSEHNIVLI 29 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~----L~~L~~~~~~i~~V 29 (258)
||| ++|+|.-+.+. .+.|.+.||+++.+
T Consensus 1 mkI-~igsDhaG~~lK~~l~~~L~~~G~eV~D~ 32 (142)
T PRK08621 1 MAI-IIGADKAGFELKEVVKDYLEDNKYEVVDV 32 (142)
T ss_pred CEE-EEEeCcchHHHHHHHHHHHHHCCCEEEEC
Confidence 784 47998766543 34455567887654
No 463
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=35.23 E-value=2.1e+02 Score=24.70 Aligned_cols=48 Identities=15% Similarity=0.091 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcE
Q psy5230 11 SAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKI 59 (258)
Q Consensus 11 fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv 59 (258)
.+....+.|++.||.-+++++.+...... ...+.....+.+.++|+++
T Consensus 163 ~~~~a~~~L~~~G~~~I~~i~g~~~~~~~-~~~R~~Gf~~~l~~~g~~~ 210 (329)
T TIGR01481 163 ATKEAVGELIAKGHKSIAFVGGPLSDSIN-GEDRLEGYKEALNKAGIQF 210 (329)
T ss_pred HHHHHHHHHHHCCCCeEEEEecCcccccc-hHHHHHHHHHHHHHcCCCC
Confidence 34567788999999877888754321100 0112234677788899875
No 464
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=35.21 E-value=1.6e+02 Score=20.58 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=39.7
Q ss_pred HHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEE-ccCCCCCCcccccchHHHHHHHhcCCCcEEE
Q psy5230 13 AAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII-QPISLKLNGKYHKIANETHKLLNKIEFDIMI 91 (258)
Q Consensus 13 ~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~-~~~~~~~~~~~~~~~~~~~~~l~~~~~Dl~v 91 (258)
.+..+.|.+.|+++. .|. .-.++-+++||++- ...++.+. .+...+.+++.++|++|
T Consensus 3 ~~~~~~l~~lG~~i~--AT~--------------gTa~~L~~~Gi~~~~~~~ki~~~------~~~i~~~i~~g~id~VI 60 (90)
T smart00851 3 VELAKRLAELGFELV--ATG--------------GTAKFLREAGLPVKTLHPKVHGG------ILAILDLIKNGEIDLVI 60 (90)
T ss_pred HHHHHHHHHCCCEEE--Ecc--------------HHHHHHHHCCCcceeccCCCCCC------CHHHHHHhcCCCeEEEE
Confidence 456778888898884 332 13566778999872 22223221 01688999999999998
Q ss_pred EEe
Q psy5230 92 VMG 94 (258)
Q Consensus 92 v~~ 94 (258)
..+
T Consensus 61 n~~ 63 (90)
T smart00851 61 NTL 63 (90)
T ss_pred ECC
Confidence 874
No 465
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=35.14 E-value=2.7e+02 Score=25.12 Aligned_cols=84 Identities=13% Similarity=-0.032 Sum_probs=45.6
Q ss_pred EEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHHHh
Q psy5230 4 IFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKLLN 83 (258)
Q Consensus 4 ~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~l~ 83 (258)
++||.+.+.. +-+.|.+.+..-+.|||.+.-.. ......|.+...++|+.+............ ....+..+..+
T Consensus 5 i~~G~g~~~~-l~~~l~~~g~~~~liv~~~~~~~----~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~-~~v~~~~~~~~ 78 (370)
T cd08192 5 IRFGAGAIKE-LPAECAELGIKRPLIVTDPGLAA----LGLVARVLALLEDAGLAAALFDEVPPNPTE-AAVEAGLAAYR 78 (370)
T ss_pred EEECcCHHHH-HHHHHHHcCCCeEEEEcCcchhh----CccHHHHHHHHHHcCCeEEEeCCCCCCCCH-HHHHHHHHHHH
Confidence 5778875443 33334444656667777542111 001234666677888887544333211011 11225556778
Q ss_pred cCCCcEEEEE
Q psy5230 84 KIEFDIMIVM 93 (258)
Q Consensus 84 ~~~~Dl~vv~ 93 (258)
+.++|++|.+
T Consensus 79 ~~~~d~IIai 88 (370)
T cd08192 79 AGGCDGVIAF 88 (370)
T ss_pred hcCCCEEEEe
Confidence 8899999877
No 466
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=35.06 E-value=91 Score=27.22 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=24.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCC---CcEEEEE
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSE---HNIVLIL 30 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~---~~i~~Vv 30 (258)
|||.++|.+..+..+.+.|.+.+ +++++|.
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~ 35 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALT 35 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEe
Confidence 69999999999999999987642 5676663
No 467
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=35.02 E-value=1.8e+02 Score=24.73 Aligned_cols=80 Identities=18% Similarity=0.219 Sum_probs=48.3
Q ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccC-CCCCCcccccchHHHHHH
Q psy5230 3 IIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPI-SLKLNGKYHKIANETHKL 81 (258)
Q Consensus 3 I~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~-~~~~~~~~~~~~~~~~~~ 81 (258)
.+|++++.-...+.+.|.+. + +-|||..- .-...++...++.++-.. .++.. ...-..+...+.
T Consensus 96 ~Ifld~GtT~~~l~~~L~~~--~-ltVvTNs~-----------~ia~~l~~~~~~~vil~GG~~~~~-~~~~~G~~a~~~ 160 (240)
T PRK10411 96 VIALDASSTCWYLARQLPDI--N-IQVFTNSH-----------PICQELGKRERIQLISSGGTLERK-YGCYVNPSLISQ 160 (240)
T ss_pred EEEEcCcHHHHHHHHhhCCC--C-eEEEeCCH-----------HHHHHHhcCCCCEEEEECCEEeCC-CCceECHHHHHH
Confidence 68999998888888888542 3 68888521 112334445677765322 11100 001233377889
Q ss_pred HhcCCCcEEEEE--eeCC
Q psy5230 82 LNKIEFDIMIVM--GILP 97 (258)
Q Consensus 82 l~~~~~Dl~vv~--~I~~ 97 (258)
|+++.+|++|.. .|++
T Consensus 161 l~~~~~d~afis~~gi~~ 178 (240)
T PRK10411 161 LKSLEIDLFIFSCEGIDS 178 (240)
T ss_pred HHhcCCCEEEEeceeECC
Confidence 999999999877 5543
No 468
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=35.01 E-value=67 Score=27.91 Aligned_cols=29 Identities=10% Similarity=0.145 Sum_probs=24.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEE
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLI 29 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~V 29 (258)
+||+++|.+.+|..+-..|..+|+++..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~ 32 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIY 32 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEE
Confidence 48999999999999999898888887544
No 469
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=34.92 E-value=3.2e+02 Score=25.16 Aligned_cols=86 Identities=12% Similarity=0.028 Sum_probs=48.3
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHH
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKL 81 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~ 81 (258)
+.++||.+... .+.+.+...|.+-+.|||.|.- . +.-...+|.+.-.+.||.+.-.+....+..- ....+-.+.
T Consensus 8 ~~i~fG~g~l~-~l~~~~~~~g~~r~liVTd~~~-~---~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~-~~v~~~~~~ 81 (377)
T COG1454 8 TEILFGRGSLK-ELGEEVKRLGAKRALIVTDRGL-A---KLGLLDKVLDSLDAAGIEYEVFDEVEPEPTI-ETVEAGAEV 81 (377)
T ss_pred ceEEecCChHH-HHHHHHHhcCCCceEEEECCcc-c---cchhHHHHHHHHHhcCCeEEEecCCCCCCCH-HHHHHHHHH
Confidence 35678887322 2333333346777889996531 1 0112346777788888886544433211000 111144578
Q ss_pred HhcCCCcEEEEE
Q psy5230 82 LNKIEFDIMIVM 93 (258)
Q Consensus 82 l~~~~~Dl~vv~ 93 (258)
+++.+||.+|.+
T Consensus 82 ~~~~~~D~iIal 93 (377)
T COG1454 82 AREFGPDTIIAL 93 (377)
T ss_pred HHhcCCCEEEEe
Confidence 999999999987
No 470
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=34.91 E-value=2.1e+02 Score=22.09 Aligned_cols=52 Identities=12% Similarity=0.057 Sum_probs=27.5
Q ss_pred CeEEEEcCCHHHH-HHHHHHHhC---CCcE--EEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcE
Q psy5230 1 MKIIFAGTSISAA-AILDTLYNS---EHNI--VLILTKPDLHSGRGMKLNFSPVKKYALKHSIKI 59 (258)
Q Consensus 1 mrI~f~Gs~~fa~-~~L~~L~~~---~~~i--~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv 59 (258)
+||+|+.+.+... +.-++|.+. ++++ .|+... .| .. ...-..+.+.++||+.
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~~~~~v~SaG~~~~----~g--~~-~~~~a~~~l~~~Gid~ 60 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRLPGVKVKSAGVHGL----VK--HP-ADATAADVAANHGVSL 60 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcCCeEEEcccccCC----CC--CC-CCHHHHHHHHHcCCCc
Confidence 6899999886554 333444442 2222 122111 11 11 1233567788899986
No 471
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=34.74 E-value=1.4e+02 Score=26.05 Aligned_cols=27 Identities=7% Similarity=0.059 Sum_probs=19.2
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCc-EEE
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHN-IVL 28 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~-i~~ 28 (258)
+|++.|.+..+..+.+.+...|.. +++
T Consensus 166 ~vlV~G~G~vG~~~~~~ak~~G~~~vi~ 193 (339)
T cd08239 166 TVLVVGAGPVGLGALMLARALGAEDVIG 193 (339)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence 577788887887777777666766 543
No 472
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=34.72 E-value=2.2e+02 Score=25.51 Aligned_cols=70 Identities=19% Similarity=0.137 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCcc---------CC----cHHHHHHHHCCCcEEc-cCCCCCCcccccch
Q psy5230 10 ISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKL---------NF----SPVKKYALKHSIKIIQ-PISLKLNGKYHKIA 75 (258)
Q Consensus 10 ~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~---------~~----~~v~~~A~~~gIpv~~-~~~~~~~~~~~~~~ 75 (258)
.+.....+.|.++|+.+ +|+|+. -||..+- .+ ..-..+|....+||+- +++..
T Consensus 52 P~v~~L~~~L~~~G~~~-~IlSRG---Yg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~~~V~V~~dR~~--------- 118 (326)
T PF02606_consen 52 PLVIWLARLLQARGYRP-AILSRG---YGRKSKGEPILVSDGSDAEEVGDEPLLLARKLPVPVIVGPDRVA--------- 118 (326)
T ss_pred HHHHHHHHHHHhcCCce-EEEcCC---CCCCCCCCeEEEeCCCChhhhcCHHHHHHHhcCCcEEEeCcHHH---------
Confidence 46677778888888775 888852 2221110 00 1235677777777754 33332
Q ss_pred HHHHHHHhcCCCcEEEEE
Q psy5230 76 NETHKLLNKIEFDIMIVM 93 (258)
Q Consensus 76 ~~~~~~l~~~~~Dl~vv~ 93 (258)
.....+++..+|++|.=
T Consensus 119 -~~~~~~~~~~~dviilD 135 (326)
T PF02606_consen 119 -AARAALKEFPADVIILD 135 (326)
T ss_pred -HHHHHHHHCCCCEEEEc
Confidence 34445555668887653
No 473
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=34.64 E-value=64 Score=28.77 Aligned_cols=31 Identities=10% Similarity=0.261 Sum_probs=26.0
Q ss_pred CeEEEEcC-CHHHHHHHHHHHhCCCcEEEEEc
Q psy5230 1 MKIIFAGT-SISAAAILDTLYNSEHNIVLILT 31 (258)
Q Consensus 1 mrI~f~Gs-~~fa~~~L~~L~~~~~~i~~Vvt 31 (258)
|||++.|. +-.|..+.+.|++.|++|+++..
T Consensus 16 ~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~ 47 (348)
T PRK15181 16 KRWLITGVAGFIGSGLLEELLFLNQTVIGLDN 47 (348)
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 68999985 66888999999999999877754
No 474
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=34.54 E-value=2.5e+02 Score=26.02 Aligned_cols=27 Identities=19% Similarity=0.096 Sum_probs=23.8
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEE
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVL 28 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~ 28 (258)
||+|+|.+..|..+...|.+.|+++.+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~ 28 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVV 28 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEE
Confidence 799999999999999999999987643
No 475
>KOG0238|consensus
Probab=34.50 E-value=77 Score=30.40 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=29.1
Q ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCC
Q psy5230 3 IIFAGTSISAAAILDTLYNSEHNIVLILTKPDLH 36 (258)
Q Consensus 3 I~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~ 36 (258)
|++.-.++.|+++.+...+.|+.-|+|.+.+|+.
T Consensus 1 iLiANRGEIAcRVirTakkmGI~tVAV~Sd~D~~ 34 (670)
T KOG0238|consen 1 ILIANRGEIACRVIRTAKKMGIRTVAVYSDADRN 34 (670)
T ss_pred CeeccccceeehhhhHHHHhCCeEEEEEccCccc
Confidence 4556677899999999999999999999988775
No 476
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=34.48 E-value=80 Score=25.97 Aligned_cols=30 Identities=27% Similarity=0.243 Sum_probs=25.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEE
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLIL 30 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vv 30 (258)
.||+++|.+..+.++++.|...|+.-+.++
T Consensus 22 s~VlIiG~gglG~evak~La~~GVg~i~lv 51 (197)
T cd01492 22 ARILLIGLKGLGAEIAKNLVLSGIGSLTIL 51 (197)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCCCEEEEE
Confidence 379999999999999999999997655554
No 477
>PLN02846 digalactosyldiacylglycerol synthase
Probab=34.47 E-value=96 Score=29.34 Aligned_cols=31 Identities=16% Similarity=0.255 Sum_probs=23.3
Q ss_pred CeEEEE---------cCCHHHHHHHHHHHhCC-CcEEEEEc
Q psy5230 1 MKIIFA---------GTSISAAAILDTLYNSE-HNIVLILT 31 (258)
Q Consensus 1 mrI~f~---------Gs~~fa~~~L~~L~~~~-~~i~~Vvt 31 (258)
|||++| |..-+.....+.|.+.| |++..|..
T Consensus 5 mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP 45 (462)
T PLN02846 5 QHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIP 45 (462)
T ss_pred CEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEec
Confidence 888887 55566777778899999 68866654
No 478
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=34.29 E-value=83 Score=23.99 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=24.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEE
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLIL 30 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vv 30 (258)
||+++|.+..|.++++.|...|+.-+.++
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~iv 29 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLI 29 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEE
Confidence 68999999999999999999987544444
No 479
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=34.24 E-value=2.2e+02 Score=26.78 Aligned_cols=32 Identities=19% Similarity=0.165 Sum_probs=25.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcC
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTK 32 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~ 32 (258)
.|++++|.++.....-+.|.+.|.+...+++.
T Consensus 310 krv~i~g~~~~~~~l~~fl~Elg~~~~~~~~~ 341 (457)
T TIGR02932 310 KKVAIFGHPDLVIGLAEFCLEVELEPVLLLLG 341 (457)
T ss_pred CeeEEEcCHHHHHHHHHHHHHCCCeEEEEEEC
Confidence 37888999888888888888888777666554
No 480
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=34.12 E-value=15 Score=31.88 Aligned_cols=92 Identities=12% Similarity=0.164 Sum_probs=57.2
Q ss_pred HHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHHHhcCCCcEEEEE
Q psy5230 14 AILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKLLNKIEFDIMIVM 93 (258)
Q Consensus 14 ~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dl~vv~ 93 (258)
...+...+.|-.-+.|+|-|.--.| ....+...+..-++|++.-+=+-++ .-+..-+...+|.++.+
T Consensus 72 ~~a~~y~~~GA~aiSVlTe~~~F~G-----s~~dL~~v~~~~~~PvL~KDFIid~--------~QI~eA~~~GADaVLLI 138 (254)
T PF00218_consen 72 EIAKAYEEAGAAAISVLTEPKFFGG-----SLEDLRAVRKAVDLPVLRKDFIIDP--------YQIYEARAAGADAVLLI 138 (254)
T ss_dssp HHHHHHHHTT-SEEEEE--SCCCHH-----HHHHHHHHHHHSSS-EEEES---SH--------HHHHHHHHTT-SEEEEE
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCC-----CHHHHHHHHHHhCCCcccccCCCCH--------HHHHHHHHcCCCEeehh
Confidence 4445566677888899997654333 3346777888889999885544444 33455567789987766
Q ss_pred -eeCCCCCHHHHHHHHHHHHHHHHHH
Q psy5230 94 -GILPEDTSLTLQNKLEKLSKILIID 118 (258)
Q Consensus 94 -~I~~~dt~~~L~~kl~~~g~~ll~~ 118 (258)
.+-+.+...+|++....+|.+.|++
T Consensus 139 ~~~L~~~~l~~l~~~a~~lGle~lVE 164 (254)
T PF00218_consen 139 AAILSDDQLEELLELAHSLGLEALVE 164 (254)
T ss_dssp GGGSGHHHHHHHHHHHHHTT-EEEEE
T ss_pred HHhCCHHHHHHHHHHHHHcCCCeEEE
Confidence 7777777788888888888766543
No 481
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=34.08 E-value=2.3e+02 Score=22.10 Aligned_cols=70 Identities=11% Similarity=0.140 Sum_probs=46.4
Q ss_pred CeEEEEcCC---HHHHHHHHHHHhC--CCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHC-CCcEEccCCC---CCCccc
Q psy5230 1 MKIIFAGTS---ISAAAILDTLYNS--EHNIVLILTKPDLHSGRGMKLNFSPVKKYALKH-SIKIIQPISL---KLNGKY 71 (258)
Q Consensus 1 mrI~f~Gs~---~fa~~~L~~L~~~--~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~-gIpv~~~~~~---~~~~~~ 71 (258)
|+|++.-.+ +-.++..+.|.+. |+++. .|. ...++-+++ ||++-...+- .++
T Consensus 5 ~~v~lsv~d~dK~~l~~~a~~l~~ll~Gf~l~--AT~--------------gTa~~L~~~~Gi~v~~vi~~~~gg~~--- 65 (142)
T PRK05234 5 KRIALIAHDHKKDDLVAWVKAHKDLLEQHELY--ATG--------------TTGGLIQEATGLDVTRLLSGPLGGDQ--- 65 (142)
T ss_pred cEEEEEEeccchHHHHHHHHHHHHHhcCCEEE--EeC--------------hHHHHHHhccCCeeEEEEcCCCCCch---
Confidence 455555444 3466777778777 88874 332 146777788 9987443111 122
Q ss_pred ccchHHHHHHHhcCCCcEEEEEe
Q psy5230 72 HKIANETHKLLNKIEFDIMIVMG 94 (258)
Q Consensus 72 ~~~~~~~~~~l~~~~~Dl~vv~~ 94 (258)
.+.+.+++.+.|++|..+
T Consensus 66 -----~i~~~I~~g~i~lVInt~ 83 (142)
T PRK05234 66 -----QIGALIAEGKIDMLIFFR 83 (142)
T ss_pred -----hHHHHHHcCceeEEEEec
Confidence 788999999999998875
No 482
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=34.08 E-value=1.1e+02 Score=28.61 Aligned_cols=75 Identities=12% Similarity=0.196 Sum_probs=42.3
Q ss_pred eEEEEcCCHHHHHHHHHHH-----hCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchH
Q psy5230 2 KIIFAGTSISAAAILDTLY-----NSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIAN 76 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~-----~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~ 76 (258)
+|+|+|-...|..++-..+ ..|..+ ++++. |. .| ......++.+|...|+|++...+ +.
T Consensus 243 vI~LVGptGvGKTTTiaKLA~~L~~~GkkV-glI~a-Dt--~R--iaAvEQLk~yae~lgipv~v~~d---~~------- 306 (436)
T PRK11889 243 TIALIGPTGVGKTTTLAKMAWQFHGKKKTV-GFITT-DH--SR--IGTVQQLQDYVKTIGFEVIAVRD---EA------- 306 (436)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCcE-EEEec-CC--cc--hHHHHHHHHHhhhcCCcEEecCC---HH-------
Confidence 5788888877766654443 334444 56653 22 11 01123467889999999874322 11
Q ss_pred HHHHHH---hc-CCCcEEEE
Q psy5230 77 ETHKLL---NK-IEFDIMIV 92 (258)
Q Consensus 77 ~~~~~l---~~-~~~Dl~vv 92 (258)
++.+.+ ++ .++|++++
T Consensus 307 ~L~~aL~~lk~~~~~DvVLI 326 (436)
T PRK11889 307 AMTRALTYFKEEARVDYILI 326 (436)
T ss_pred HHHHHHHHHHhccCCCEEEE
Confidence 444444 32 35898875
No 483
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=34.08 E-value=2.2e+02 Score=23.23 Aligned_cols=30 Identities=20% Similarity=0.230 Sum_probs=23.5
Q ss_pred eEEEEcC-CHHHHHHHHHHHhCCCcEEEEEc
Q psy5230 2 KIIFAGT-SISAAAILDTLYNSEHNIVLILT 31 (258)
Q Consensus 2 rI~f~Gs-~~fa~~~L~~L~~~~~~i~~Vvt 31 (258)
+|++.|. ...+..+.+.|++.|++++.++.
T Consensus 7 ~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~ 37 (247)
T PRK05565 7 VAIVTGASGGIGRAIAELLAKEGAKVVIAYD 37 (247)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEcC
Confidence 5788875 57999999999998988765534
No 484
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=33.90 E-value=56 Score=29.42 Aligned_cols=30 Identities=27% Similarity=0.292 Sum_probs=25.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEE
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLIL 30 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vv 30 (258)
|+|.++|.+.|+-..-..|.+++|++..-.
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~ 31 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWG 31 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEe
Confidence 799999999999999999999887775443
No 485
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=33.61 E-value=1.4e+02 Score=26.91 Aligned_cols=31 Identities=23% Similarity=0.473 Sum_probs=24.7
Q ss_pred CeEEEEcC-CHHHHHHHHHHHhC-CCcEEEEEc
Q psy5230 1 MKIIFAGT-SISAAAILDTLYNS-EHNIVLILT 31 (258)
Q Consensus 1 mrI~f~Gs-~~fa~~~L~~L~~~-~~~i~~Vvt 31 (258)
|||+++|. +-.|...++.|.+. .++++.+++
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~ 33 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVS 33 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEec
Confidence 89999996 77899999988865 367776655
No 486
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=33.56 E-value=1.9e+02 Score=27.39 Aligned_cols=83 Identities=20% Similarity=0.334 Sum_probs=48.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCC---C---CccCCc---HHHHHHHHCCCcEEccCCCCCCccc
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGR---G---MKLNFS---PVKKYALKHSIKIIQPISLKLNGKY 71 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr---~---~~~~~~---~v~~~A~~~gIpv~~~~~~~~~~~~ 71 (258)
+||+++|.+-.|+.+...|.+.|+++ .|+...+...|. + ..+... ...++.+++|+.++.-......
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~~g~~V-~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~--- 219 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNRAGHTV-TVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGVD--- 219 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeE-EEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCCc---
Confidence 48999999999999999999988876 455543332221 0 001111 1235667889988653322110
Q ss_pred ccchHHHHHHHhcCCCcEEEEE
Q psy5230 72 HKIANETHKLLNKIEFDIMIVM 93 (258)
Q Consensus 72 ~~~~~~~~~~l~~~~~Dl~vv~ 93 (258)
-..+.+ ...+|.+|.+
T Consensus 220 -----~~~~~~-~~~~d~VilA 235 (485)
T TIGR01317 220 -----ISADEL-KEQFDAVVLA 235 (485)
T ss_pred -----cCHHHH-HhhCCEEEEc
Confidence 001222 2468888877
No 487
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=33.46 E-value=1.3e+02 Score=31.35 Aligned_cols=83 Identities=14% Similarity=0.047 Sum_probs=50.7
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCC---CC---ccCCcH---HHHHHHHCCCcEEccCCCCCCcccc
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGR---GM---KLNFSP---VKKYALKHSIKIIQPISLKLNGKYH 72 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr---~~---~~~~~~---v~~~A~~~gIpv~~~~~~~~~~~~~ 72 (258)
||+++|++..|+.+-..|...||++ .|+-.-++.-|- |- ++...- -.+..++.|+.+..-..+...
T Consensus 308 kVaVIGsGPAGLsaA~~Lar~G~~V-tVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~d---- 382 (944)
T PRK12779 308 PIAVVGSGPSGLINAYLLAVEGFPV-TVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGKT---- 382 (944)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeE-EEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEeccE----
Confidence 7999999999999999999999986 455443333331 10 111111 123456678876432222111
Q ss_pred cchHHHHHHHhcCCCcEEEEE
Q psy5230 73 KIANETHKLLNKIEFDIMIVM 93 (258)
Q Consensus 73 ~~~~~~~~~l~~~~~Dl~vv~ 93 (258)
-.++.+....+|.+|++
T Consensus 383 ----it~~~l~~~~yDAV~LA 399 (944)
T PRK12779 383 ----ATLEDLKAAGFWKIFVG 399 (944)
T ss_pred ----EeHHHhccccCCEEEEe
Confidence 23456666789999888
No 488
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=33.44 E-value=1.9e+02 Score=26.89 Aligned_cols=83 Identities=16% Similarity=0.150 Sum_probs=47.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCC---CCcc--CC----cHHHHHHHHCCCcEEccCCCCCCccc
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGR---GMKL--NF----SPVKKYALKHSIKIIQPISLKLNGKY 71 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr---~~~~--~~----~~v~~~A~~~gIpv~~~~~~~~~~~~ 71 (258)
+||+++|.+-.++.+-..|.+.|+++. |+-..+...|. +... .+ ....++..+.|+.++.-......
T Consensus 141 ~~VvIIGgGpaGl~aA~~l~~~g~~V~-lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~--- 216 (457)
T PRK11749 141 KKVAVIGAGPAGLTAAHRLARKGYDVT-IFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGRD--- 216 (457)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEE-EEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECCc---
Confidence 589999999999999999988888764 45443332221 0000 01 11234566788887543322111
Q ss_pred ccchHHHHHHHhcCCCcEEEEE
Q psy5230 72 HKIANETHKLLNKIEFDIMIVM 93 (258)
Q Consensus 72 ~~~~~~~~~~l~~~~~Dl~vv~ 93 (258)
-.++.+. ..+|.+|++
T Consensus 217 -----v~~~~~~-~~~d~vvlA 232 (457)
T PRK11749 217 -----ITLDELR-AGYDAVFIG 232 (457)
T ss_pred -----cCHHHHH-hhCCEEEEc
Confidence 1112232 578998887
No 489
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=33.42 E-value=43 Score=27.14 Aligned_cols=15 Identities=20% Similarity=0.215 Sum_probs=12.1
Q ss_pred HHHHHHHHCCCcEEc
Q psy5230 47 PVKKYALKHSIKIIQ 61 (258)
Q Consensus 47 ~v~~~A~~~gIpv~~ 61 (258)
.++++|++++++++.
T Consensus 133 ~~~~~a~~~~v~~id 147 (191)
T PRK10528 133 IYPKLAKEFDIPLLP 147 (191)
T ss_pred HHHHHHHHhCCCccH
Confidence 468899999998853
No 490
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=33.40 E-value=1.7e+02 Score=28.90 Aligned_cols=56 Identities=14% Similarity=0.039 Sum_probs=37.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEc
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQ 61 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~ 61 (258)
+|+++|.+..|+.+...++..|-+-+.++...+... . .......+.+++.|++++.
T Consensus 470 ~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~---~-~~~~~e~~~~~~~Gv~~~~ 525 (654)
T PRK12769 470 NVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEAN---M-PGSKKEVKNAREEGANFEF 525 (654)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCC---C-CCCHHHHHHHHHcCCeEEe
Confidence 689999999999999888888765445555422211 0 1112345668899999764
No 491
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=33.39 E-value=2.2e+02 Score=24.58 Aligned_cols=90 Identities=11% Similarity=0.017 Sum_probs=50.8
Q ss_pred HHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCC-CCcccccchHHHHHHHhcCCCcEEE
Q psy5230 13 AAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLK-LNGKYHKIANETHKLLNKIEFDIMI 91 (258)
Q Consensus 13 ~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~-~~~~~~~~~~~~~~~l~~~~~Dl~v 91 (258)
..+.+.+.+.++.-++++. .+.+.|+. ....++..+++.|+.+....... ...++ ...+..+++.+||+++
T Consensus 126 ~~l~~~~~~~~~~~vail~-~~~~~g~~---~~~~~~~~~~~~G~~vv~~~~~~~~~~d~----~~~v~~l~~~~pd~v~ 197 (312)
T cd06346 126 QALAQLAAERGYKSVATTY-INNDYGVG---LADAFTKAFEALGGTVTNVVAHEEGKSSY----SSEVAAAAAGGPDALV 197 (312)
T ss_pred HHHHHHHHHcCCCeEEEEE-ccCchhhH---HHHHHHHHHHHcCCEEEEEEeeCCCCCCH----HHHHHHHHhcCCCEEE
Confidence 3344555555677777776 45566553 22356788889999875432221 01111 1567788889999998
Q ss_pred EEeeCCCCCHHHHHHHHHHHH
Q psy5230 92 VMGILPEDTSLTLQNKLEKLS 112 (258)
Q Consensus 92 v~~I~~~dt~~~L~~kl~~~g 112 (258)
+.-- ......+...+.++|
T Consensus 198 ~~~~--~~~~~~~~~~~~~~G 216 (312)
T cd06346 198 VIGY--PETGSGILRSAYEQG 216 (312)
T ss_pred Eecc--cchHHHHHHHHHHcC
Confidence 7622 223344444444443
No 492
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=33.39 E-value=44 Score=33.35 Aligned_cols=87 Identities=10% Similarity=0.119 Sum_probs=55.7
Q ss_pred HHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCCCCCcccccchHHHHHHHhcCCCcEEEEE-eeCC
Q psy5230 19 LYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISLKLNGKYHKIANETHKLLNKIEFDIMIVM-GILP 97 (258)
Q Consensus 19 L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dl~vv~-~I~~ 97 (258)
..+.|-.-+.|+|-|+--.| ....+......-++|++.-+=+-++ .-+..-+....|.++.+ .+-+
T Consensus 79 y~~~GA~aiSVlTe~~~F~G-----s~~~l~~vr~~v~~PvLrKDFIid~--------~QI~ea~~~GADavLLI~~~L~ 145 (695)
T PRK13802 79 YEQGGASAISVLTEGRRFLG-----SLDDFDKVRAAVHIPVLRKDFIVTD--------YQIWEARAHGADLVLLIVAALD 145 (695)
T ss_pred HHHcCCcEEEEecCcCcCCC-----CHHHHHHHHHhCCCCEEeccccCCH--------HHHHHHHHcCCCEeehhHhhcC
Confidence 33445666777776544333 2345666666678888776544444 33344556778877766 6666
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q psy5230 98 EDTSLTLQNKLEKLSKILIID 118 (258)
Q Consensus 98 ~dt~~~L~~kl~~~g~~ll~~ 118 (258)
+++..+|++....+|.+.|++
T Consensus 146 ~~~l~~l~~~a~~lGme~LvE 166 (695)
T PRK13802 146 DAQLKHLLDLAHELGMTVLVE 166 (695)
T ss_pred HHHHHHHHHHHHHcCCeEEEE
Confidence 778888888888888776644
No 493
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=33.36 E-value=1.7e+02 Score=27.47 Aligned_cols=57 Identities=12% Similarity=0.070 Sum_probs=37.9
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEcc
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQP 62 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~ 62 (258)
+++++|+...+..+...++..|..-+.||...+... .. ......+.+++.|++++..
T Consensus 284 ~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~---~~-~~~~e~~~~~~~GV~~~~~ 340 (467)
T TIGR01318 284 RVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEAN---MP-GSRREVANAREEGVEFLFN 340 (467)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCccc---CC-CCHHHHHHHHhcCCEEEec
Confidence 689999999999999888888765567776532211 00 1122345678899987643
No 494
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=33.16 E-value=2e+02 Score=25.12 Aligned_cols=80 Identities=18% Similarity=0.261 Sum_probs=45.5
Q ss_pred eEEEEcCC-HHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcE-EccCCCCCCcccccchHHHH
Q psy5230 2 KIIFAGTS-ISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKI-IQPISLKLNGKYHKIANETH 79 (258)
Q Consensus 2 rI~f~Gs~-~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv-~~~~~~~~~~~~~~~~~~~~ 79 (258)
++++-|-+ ..|.+.-+.|.++|++++.|-=.-++ +. .--+++-.++++.+ +.+-++.+.. -...+.
T Consensus 8 ~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~k-------L~-~la~~l~~~~~v~v~vi~~DLs~~~----~~~~l~ 75 (265)
T COG0300 8 TALITGASSGIGAELAKQLARRGYNLILVARREDK-------LE-ALAKELEDKTGVEVEVIPADLSDPE----ALERLE 75 (265)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHH-------HH-HHHHHHHHhhCceEEEEECcCCChh----HHHHHH
Confidence 56677655 59999999999999999776321111 10 11234455566665 3455565541 111344
Q ss_pred HHHhcC--CCcEEEEE
Q psy5230 80 KLLNKI--EFDIMIVM 93 (258)
Q Consensus 80 ~~l~~~--~~Dl~vv~ 93 (258)
+.+++. ..|++|-.
T Consensus 76 ~~l~~~~~~IdvLVNN 91 (265)
T COG0300 76 DELKERGGPIDVLVNN 91 (265)
T ss_pred HHHHhcCCcccEEEEC
Confidence 455554 67777644
No 495
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=33.09 E-value=3.3e+02 Score=23.72 Aligned_cols=29 Identities=10% Similarity=0.134 Sum_probs=24.2
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEE
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLIL 30 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vv 30 (258)
+|+++|.+..|..+.+.|...|+.-+.++
T Consensus 32 ~VlVvG~GGVGs~vae~Lar~GVg~itLi 60 (268)
T PRK15116 32 HICVVGIGGVGSWAAEALARTGIGAITLI 60 (268)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCEEEEE
Confidence 79999999999999999999985443343
No 496
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=32.97 E-value=2.6e+02 Score=26.01 Aligned_cols=83 Identities=16% Similarity=0.170 Sum_probs=48.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCC---CC---ccCCc---HHHHHHHHCCCcEEccCCCCCCccc
Q psy5230 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGR---GM---KLNFS---PVKKYALKHSIKIIQPISLKLNGKY 71 (258)
Q Consensus 1 mrI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr---~~---~~~~~---~v~~~A~~~gIpv~~~~~~~~~~~~ 71 (258)
+||+++|.+..|+.+-..|.+.|+++ .|+...+.+-|- +. .+... ...+...++|+.++.-......
T Consensus 134 ~~V~IIG~G~aGl~aA~~l~~~G~~V-~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~--- 209 (449)
T TIGR01316 134 KKVAVIGAGPAGLACASELAKAGHSV-TVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVGKT--- 209 (449)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCcE-EEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccCCc---
Confidence 48999999999999999999988886 455543333221 10 01111 1223456789887653322111
Q ss_pred ccchHHHHHHHhcCCCcEEEEE
Q psy5230 72 HKIANETHKLLNKIEFDIMIVM 93 (258)
Q Consensus 72 ~~~~~~~~~~l~~~~~Dl~vv~ 93 (258)
-..+.+. ..+|.+|++
T Consensus 210 -----v~~~~~~-~~yd~viiA 225 (449)
T TIGR01316 210 -----ATLEELF-SQYDAVFIG 225 (449)
T ss_pred -----CCHHHHH-hhCCEEEEe
Confidence 1112222 358988888
No 497
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=32.97 E-value=2.4e+02 Score=25.18 Aligned_cols=31 Identities=16% Similarity=0.153 Sum_probs=23.0
Q ss_pred eEEEEcCCHHHHHHHHHHHhC-CCcEEEEEcC
Q psy5230 2 KIIFAGTSISAAAILDTLYNS-EHNIVLILTK 32 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~-~~~i~~Vvt~ 32 (258)
+++|||++..|..-+++|... ..+-+.|+.+
T Consensus 130 ~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r 161 (325)
T TIGR02371 130 VLGIIGAGRQAWTQLEALSRVFDLEEVSVYCR 161 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEECC
Confidence 689999999999888887664 3555566643
No 498
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=32.81 E-value=91 Score=26.00 Aligned_cols=51 Identities=18% Similarity=0.179 Sum_probs=38.4
Q ss_pred EcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEccCCC
Q psy5230 6 AGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQPISL 65 (258)
Q Consensus 6 ~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~~~~ 65 (258)
+-|+.....+.+.|.++|.++++|++--|+. +-.++.-.++|+|++.--++
T Consensus 122 iTTG~Si~eai~~l~~~G~~V~gv~~ivDR~---------~~~~~~~~~~g~~~~sl~tl 172 (201)
T COG0461 122 ITTGGSILEAVEALREAGAEVVGVAVIVDRQ---------SGAKEVLKEYGVKLVSLVTL 172 (201)
T ss_pred ccCCHhHHHHHHHHHHcCCeEEEEEEEEecc---------hhHHHHHHhcCCceEEEeeH
Confidence 3456678889999999999999888876653 33677888899988765443
No 499
>PRK06116 glutathione reductase; Validated
Probab=32.74 E-value=1.2e+02 Score=28.09 Aligned_cols=60 Identities=10% Similarity=0.015 Sum_probs=38.7
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCCccCCcHHHHHHHHCCCcEEcc
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKIIQP 62 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~gr~~~~~~~~v~~~A~~~gIpv~~~ 62 (258)
+|+++|.+..++++...|.+.+.++. +++..+.....-.......+.+..+++|+.++.-
T Consensus 169 ~vvViGgG~~g~E~A~~l~~~g~~Vt-lv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~ 228 (450)
T PRK06116 169 RVAVVGAGYIAVEFAGVLNGLGSETH-LFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTN 228 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEE-EEecCCCCccccCHHHHHHHHHHHHHCCcEEECC
Confidence 68999999999999999988887764 4443322211000011124566778899998653
No 500
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=32.73 E-value=1.9e+02 Score=25.94 Aligned_cols=28 Identities=11% Similarity=0.092 Sum_probs=17.9
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCc-EEEE
Q psy5230 2 KIIFAGTSISAAAILDTLYNSEHN-IVLI 29 (258)
Q Consensus 2 rI~f~Gs~~fa~~~L~~L~~~~~~-i~~V 29 (258)
+|++.|.+..+..+.+.+...|.+ ++++
T Consensus 194 ~VlV~G~G~vG~~a~~lak~~G~~~Vi~~ 222 (371)
T cd08281 194 SVAVVGLGGVGLSALLGAVAAGASQVVAV 222 (371)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCcEEEE
Confidence 467778777777766666666663 4433
Done!