Your job contains 1 sequence.
>psy5230
MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII
QPISLKLNGKYHKIANETHKLLNKIEFDIMIVMGILPEDTSLTLQNKLEKLSKILIIDTI
KKIEYDMTKLFFKPQSNIGESYAPLIKKNEAVLDWSLSAKTIMRKINAFNPFPGAKTYYI
SYQNKKKFLKIWKAHALSIESTKKPGTILNVNFHNGILVVCGKNVIKLLELQKNNKKKIS
ATEFINGCIKNIKYFISV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy5230
(258 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|P23882 - symbol:fmt "10-formyltetrahydrofolate:... 185 1.9e-29 2
TIGR_CMR|CBU_1997 - symbol:CBU_1997 "methionyl-tRNA formy... 182 3.8e-28 2
TIGR_CMR|SO_0031 - symbol:SO_0031 "methionyl-tRNA formylt... 176 1.0e-25 2
TIGR_CMR|CHY_1483 - symbol:CHY_1483 "methionyl-tRNA formy... 178 1.6e-23 2
UNIPROTKB|Q9KVU4 - symbol:fmt "Methionyl-tRNA formyltrans... 157 9.3e-22 2
TIGR_CMR|VC_0045 - symbol:VC_0045 "methionyl-tRNA formylt... 157 9.3e-22 2
TIGR_CMR|CPS_0019 - symbol:CPS_0019 "methionyl-tRNA formy... 152 1.2e-20 2
TIGR_CMR|GSU_0130 - symbol:GSU_0130 "methionyl-tRNA formy... 150 1.0e-17 2
TIGR_CMR|SPO_3216 - symbol:SPO_3216 "methionyl-tRNA formy... 125 2.7e-12 2
TIGR_CMR|BA_4004 - symbol:BA_4004 "methionyl-tRNA formylt... 119 7.5e-11 2
TIGR_CMR|DET_1642 - symbol:DET_1642 "methionyl-tRNA formy... 111 3.5e-10 2
UNIPROTKB|P64134 - symbol:fmt "Methionyl-tRNA formyltrans... 112 6.9e-10 2
TIGR_CMR|ECH_0897 - symbol:ECH_0897 "methionyl-tRNA formy... 89 9.3e-07 2
TIGR_CMR|CJE_0093 - symbol:CJE_0093 "methionyl-tRNA formy... 89 2.4e-06 2
>UNIPROTKB|P23882 [details] [associations]
symbol:fmt "10-formyltetrahydrofolate:L-methionyl-tRNAfMet
N-formyltransferase" species:83333 "Escherichia coli K-12"
[GO:0071951 "conversion of methionyl-tRNA to
N-formyl-methionyl-tRNA" evidence=IEA] [GO:0009058 "biosynthetic
process" evidence=IEA] [GO:0008168 "methyltransferase activity"
evidence=IEA] [GO:0032259 "methylation" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA;IDA] [GO:0019988
"charged-tRNA amino acid modification" evidence=IDA] [GO:0006412
"translation" evidence=IEA] [GO:0004479 "methionyl-tRNA
formyltransferase activity" evidence=IEA;IDA] HAMAP:MF_00182
InterPro:IPR001555 InterPro:IPR002376 InterPro:IPR005793
InterPro:IPR005794 InterPro:IPR011034 Pfam:PF00551 Pfam:PF02911
PROSITE:PS00373 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR SUPFAM:SSF50486 EMBL:U18997 GO:GO:0008168
Gene3D:3.10.25.10 Gene3D:3.40.50.170 SUPFAM:SSF53328 EMBL:X63666
EMBL:X77091 eggNOG:COG0223 HOGENOM:HOG000261177 KO:K00604
GO:GO:0004479 InterPro:IPR015518 PANTHER:PTHR11138
TIGRFAMs:TIGR00460 OMA:GITLMQM ProtClustDB:PRK00005 EMBL:X00767
EMBL:Y10307 PIR:S23108 RefSeq:NP_417746.1 RefSeq:YP_492145.1
PDB:1FMT PDB:2FMT PDBsum:1FMT PDBsum:2FMT ProteinModelPortal:P23882
SMR:P23882 DIP:DIP-9668N IntAct:P23882 SWISS-2DPAGE:P23882
PaxDb:P23882 PRIDE:P23882 EnsemblBacteria:EBESCT00000000152
EnsemblBacteria:EBESCT00000018323 GeneID:12934435 GeneID:947779
KEGG:ecj:Y75_p3889 KEGG:eco:b3288 PATRIC:32122008 EchoBASE:EB1247
EcoGene:EG11268 BioCyc:EcoCyc:EG11268-MONOMER
BioCyc:ECOL316407:JW3249-MONOMER BioCyc:MetaCyc:EG11268-MONOMER
EvolutionaryTrace:P23882 Genevestigator:P23882 Uniprot:P23882
Length = 315
Score = 185 (70.2 bits), Expect = 1.9e-29, Sum P(2) = 1.9e-29
Identities = 49/152 (32%), Positives = 78/152 (51%)
Query: 95 ILPEDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLIKKNEAVLD 154
I EDTS TL +KL +L +I T+K++ K + ++ + +YA + K EA +D
Sbjct: 159 ITAEDTSGTLYDKLAELGPQGLITTLKQLADGTAKPEVQDETLV--TYAEKLSKEEARID 216
Query: 155 WSLSAKTIMRKINAFNPFPGAKTYYISYQNKKKFLKIWKAHALSIESTKKPGTILNVNFH 214
WSLSA + R I AFNP+P + ++ + + +K+WKA + + PGTIL N
Sbjct: 217 WSLSAAQLERCIRAFNPWPMS---WLEIEGQP--VKVWKASVIDTATNAAPGTILEAN-K 270
Query: 215 NGILVVCGKNVIXXXXXXXXXXXXISATEFIN 246
GI V G ++ +SA + +N
Sbjct: 271 QGIQVATGDGILNLLSLQPAGKKAMSAQDLLN 302
Score = 162 (62.1 bits), Expect = 1.9e-29, Sum P(2) = 1.9e-29
Identities = 40/101 (39%), Positives = 61/101 (60%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
++IIFAGT AA LD L +S HN+V + T+PD +GRG KL SPVK A + + +
Sbjct: 5 LRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVF 64
Query: 61 QPISLKLNGKYHKIANETHKLLNKIEFDIMIVMG---ILPE 98
QP+SL+ E +L+ +++ D+M+V+ ILP+
Sbjct: 65 QPVSLR--------PQENQQLVAELQADVMVVVAYGLILPK 97
>TIGR_CMR|CBU_1997 [details] [associations]
symbol:CBU_1997 "methionyl-tRNA formyltransferase"
species:227377 "Coxiella burnetii RSA 493" [GO:0004479
"methionyl-tRNA formyltransferase activity" evidence=ISS]
[GO:0006431 "methionyl-tRNA aminoacylation" evidence=ISS]
HAMAP:MF_00182 InterPro:IPR001555 InterPro:IPR002376
InterPro:IPR005793 InterPro:IPR005794 InterPro:IPR011034
Pfam:PF00551 Pfam:PF02911 PROSITE:PS00373 SUPFAM:SSF50486
GO:GO:0006413 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0008168
Gene3D:3.10.25.10 Gene3D:3.40.50.170 SUPFAM:SSF53328 eggNOG:COG0223
HOGENOM:HOG000261177 KO:K00604 GO:GO:0004479 InterPro:IPR015518
PANTHER:PTHR11138 TIGRFAMs:TIGR00460 OMA:GITLMQM RefSeq:NP_820972.1
PDB:3TQQ PDBsum:3TQQ ProteinModelPortal:Q83AA8 SMR:Q83AA8
PRIDE:Q83AA8 GeneID:1209910 KEGG:cbu:CBU_1997 PATRIC:17932735
ProtClustDB:CLSK915177 BioCyc:CBUR227377:GJ7S-1970-MONOMER
Uniprot:Q83AA8
Length = 314
Score = 182 (69.1 bits), Expect = 3.8e-28, Sum P(2) = 3.8e-28
Identities = 45/152 (29%), Positives = 80/152 (52%)
Query: 95 ILPEDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLIKKNEAVLD 154
I EDT+ L ++L + L+++++ K+E KL + Q +YA I+K EA++D
Sbjct: 157 ISSEDTAADLHDRLSLIGADLLLESLAKLEKGDIKL--EKQDEASATYASKIQKQEALID 214
Query: 155 WSLSAKTIMRKINAFNPFPGAKTYYISYQNKKKFLKIWKAHALSIESTKKPGTILNVNFH 214
W SA I R++ AFNP P A TY+ + + ++IW+A + ++ +PG +++ +
Sbjct: 215 WRKSAVEIARQVRAFNPTPIAFTYF-----EGQPMRIWRATVVDEKTDFEPGVLVDAD-K 268
Query: 215 NGILVVCGKNVIXXXXXXXXXXXXISATEFIN 246
GI + G ++ SA +FIN
Sbjct: 269 KGISIAAGSGILRLHQLQLPGKRVCSAGDFIN 300
Score = 153 (58.9 bits), Expect = 3.8e-28, Sum P(2) = 3.8e-28
Identities = 40/101 (39%), Positives = 60/101 (59%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
+KI+FAGT A L L +S H ++ + T+PD SGRG K+ SPVK+ A ++ I II
Sbjct: 3 LKIVFAGTPQFAVPTLRALIDSSHRVLAVYTQPDRPSGRGQKIMESPVKEIARQNEIPII 62
Query: 61 QPISLKLNGKYHKIANETHKLLNKIEFDIMIVMG---ILPE 98
QP SL+ ++ E KL+ + D+M+V+ ILP+
Sbjct: 63 QPFSLR-----DEVEQE--KLI-AMNADVMVVVAYGLILPK 95
>TIGR_CMR|SO_0031 [details] [associations]
symbol:SO_0031 "methionyl-tRNA formyltransferase"
species:211586 "Shewanella oneidensis MR-1" [GO:0004479
"methionyl-tRNA formyltransferase activity" evidence=ISS]
[GO:0006431 "methionyl-tRNA aminoacylation" evidence=ISS]
HAMAP:MF_00182 InterPro:IPR001555 InterPro:IPR002376
InterPro:IPR005793 InterPro:IPR005794 InterPro:IPR011034
Pfam:PF00551 Pfam:PF02911 PROSITE:PS00373 SUPFAM:SSF50486
GO:GO:0006413 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0008168
Gene3D:3.10.25.10 Gene3D:3.40.50.170 SUPFAM:SSF53328 eggNOG:COG0223
HOGENOM:HOG000261177 KO:K00604 GO:GO:0004479 InterPro:IPR015518
PANTHER:PTHR11138 TIGRFAMs:TIGR00460 OMA:GITLMQM RefSeq:NP_715673.1
ProteinModelPortal:Q8EKQ9 SMR:Q8EKQ9 GeneID:1167929
KEGG:son:SO_0031 PATRIC:23519753 ProtClustDB:CLSK905552
Uniprot:Q8EKQ9
Length = 318
Score = 176 (67.0 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
Identities = 45/101 (44%), Positives = 60/101 (59%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
+ IIFAGT AA L L NS HN++ + T+PD +GRG KL SPVK+ AL HSI +
Sbjct: 4 LNIIFAGTPDFAARHLQALINSHHNVIAVYTQPDRPAGRGKKLTASPVKELALSHSIPVY 63
Query: 61 QPISLKLNGKYHKIANETHKLLNKIEFDIMIVMG---ILPE 98
QP SL+ ++A+ LN DIM+V+ ILP+
Sbjct: 64 QPGSLRKEPAQQELAS-----LNA---DIMVVVAYGLILPK 96
Score = 153 (58.9 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
Identities = 44/160 (27%), Positives = 74/160 (46%)
Query: 90 MIVMGILP---EDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLI 146
M++ LP +DTS +L KL ++ ++ + L + Q +YA +
Sbjct: 150 MLLKTYLPIEDDDTSASLYEKLALQGPDALLQALEGLANGT--LAAEKQDETLANYAEKL 207
Query: 147 KKNEAVLDWSLSAKTIMRKINAFNPFPGAKTYYISYQNKKKFLKIWKAHALSIESTKKPG 206
K EA LDW+ SA + +++ AFNP+P + Y +Q +K+W+ + ST PG
Sbjct: 208 SKEEARLDWTKSATQLWQEVRAFNPWPVS---YFEHQGNT--IKVWQTQVSTTSSTAAPG 262
Query: 207 TILNVNFHNGILVVCGKNVIXXXXXXXXXXXXISATEFIN 246
TI+N + GI V G V+ +S + +N
Sbjct: 263 TIINAS-KKGIDVSTGDGVLTLLSMQLPGKKPLSVADILN 301
>TIGR_CMR|CHY_1483 [details] [associations]
symbol:CHY_1483 "methionyl-tRNA formyltransferase"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004479 "methionyl-tRNA formyltransferase activity"
evidence=ISS] [GO:0006431 "methionyl-tRNA aminoacylation"
evidence=ISS] HAMAP:MF_00182 InterPro:IPR001555 InterPro:IPR002376
InterPro:IPR005793 InterPro:IPR005794 InterPro:IPR011034
Pfam:PF00551 Pfam:PF02911 PROSITE:PS00373 SUPFAM:SSF50486
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006413 GO:GO:0008168
Gene3D:3.10.25.10 Gene3D:3.40.50.170 SUPFAM:SSF53328 eggNOG:COG0223
HOGENOM:HOG000261177 KO:K00604 GO:GO:0004479 InterPro:IPR015518
PANTHER:PTHR11138 TIGRFAMs:TIGR00460 OMA:GITLMQM RefSeq:YP_360315.1
HSSP:P77398 ProteinModelPortal:Q3AC19 STRING:Q3AC19 GeneID:3726464
KEGG:chy:CHY_1483 PATRIC:21276097
BioCyc:CHYD246194:GJCN-1482-MONOMER Uniprot:Q3AC19
Length = 308
Score = 178 (67.7 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
Identities = 51/156 (32%), Positives = 80/156 (51%)
Query: 93 MGILPEDTSLTLQNKLEKLSKILIIDTIKKI-EYDMTKLFFKPQSNIGESYAPLIKKNEA 151
+ I E T L+ L ++ LII+ +K++ E + ++ PQ + +YAP +KK +
Sbjct: 151 VAINQEITGGELRKILAEIGADLIIEALKRLREGGLPRV---PQDHQLATYAPPLKKEDE 207
Query: 152 VLDWSLSAKTIMRKINAFNPFPGAKTYYISYQNKKKFLKIWKAHALSIESTKKPGTILNV 211
++ W+ SA+ I +I A NP PGA Y ++ KK +KIWKA S KKPG I+
Sbjct: 208 IIHWADSAEKIRNQIRALNPVPGA---YTVFRGKK--IKIWKAKVGEF-SGKKPGEIIFA 261
Query: 212 NFHNGILVVCGKNVIXXXXXXXXXXXXISATEFING 247
+ NG LV G+ + +S F+NG
Sbjct: 262 DRKNGFLVATGERGLQILELQPEGGKKMSWESFLNG 297
Score = 124 (48.7 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
Identities = 30/75 (40%), Positives = 46/75 (61%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
M+I++ GT A L L S H + L++TKPD +GRG K+ SPVK +A ++ +++I
Sbjct: 1 MRIVYMGTPEFAVKPLAKLI-SHHEVALVVTKPDAAAGRGKKVISSPVKLFAQENHLRVI 59
Query: 61 QPISLKLNGK-YHKI 74
P LK N + Y +I
Sbjct: 60 TP--LKFNEEVYQEI 72
>UNIPROTKB|Q9KVU4 [details] [associations]
symbol:fmt "Methionyl-tRNA formyltransferase"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004479 "methionyl-tRNA formyltransferase activity"
evidence=ISS] [GO:0006413 "translational initiation" evidence=ISS]
[GO:0006431 "methionyl-tRNA aminoacylation" evidence=ISS]
HAMAP:MF_00182 InterPro:IPR001555 InterPro:IPR002376
InterPro:IPR005793 InterPro:IPR005794 InterPro:IPR011034
Pfam:PF00551 Pfam:PF02911 PROSITE:PS00373 SUPFAM:SSF50486
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008168
Gene3D:3.10.25.10 Gene3D:3.40.50.170 SUPFAM:SSF53328 eggNOG:COG0223
KO:K00604 GO:GO:0004479 InterPro:IPR015518 PANTHER:PTHR11138
TIGRFAMs:TIGR00460 OMA:GITLMQM ProtClustDB:PRK00005 PIR:H82372
RefSeq:NP_229704.1 PDB:3Q0I PDBsum:3Q0I ProteinModelPortal:Q9KVU4
SMR:Q9KVU4 DNASU:2614441 GeneID:2614441 KEGG:vch:VC0045
PATRIC:20079138 EvolutionaryTrace:Q9KVU4 GO:GO:0006431
Uniprot:Q9KVU4
Length = 315
Score = 157 (60.3 bits), Expect = 9.3e-22, Sum P(2) = 9.3e-22
Identities = 37/98 (37%), Positives = 60/98 (61%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
++I+FAGT AA L L +SEH I+ + T+P+ +GRG KL SPVK AL+H++ +
Sbjct: 5 LRIVFAGTPDFAARHLAALLSSEHEIIAVYTQPERPAGRGKKLTASPVKTLALEHNVPVY 64
Query: 61 QPISLKLNGKYHKIANETHKLLNKIEFDIMIVM--GIL 96
QP + K ++E+ + L + D+M+V+ G+L
Sbjct: 65 QPENFK--------SDESKQQLAALNADLMVVVAYGLL 94
Score = 149 (57.5 bits), Expect = 9.3e-22, Sum P(2) = 9.3e-22
Identities = 42/140 (30%), Positives = 76/140 (54%)
Query: 90 MIVMGILP---EDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLI 146
M+ + LP DTS ++ +KL +L +++ ++ I T + K + +YA +
Sbjct: 151 MLKIATLPIEASDTSASMYDKLAELGPQALLECLQDIAQG-TAVAVKQDDGLA-NYAHKL 208
Query: 147 KKNEAVLDWSLSAKTIMRKINAFNPFPGAKTYYISYQNKKKFLKIWKAHALSIESTKKPG 206
K EA ++WS +A I R I AFNP+P +++ +N +K+W+A + T+ PG
Sbjct: 209 SKEEARINWSDAATHIERCIRAFNPWP--MSHFEVAENS---IKVWQARVETRAVTQTPG 263
Query: 207 TILNVNFHNGILVVCGKNVI 226
TI+ + +GI V G++V+
Sbjct: 264 TIIQAD-KSGIYVATGQDVL 282
>TIGR_CMR|VC_0045 [details] [associations]
symbol:VC_0045 "methionyl-tRNA formyltransferase"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004479
"methionyl-tRNA formyltransferase activity" evidence=ISS]
[GO:0006431 "methionyl-tRNA aminoacylation" evidence=ISS]
HAMAP:MF_00182 InterPro:IPR001555 InterPro:IPR002376
InterPro:IPR005793 InterPro:IPR005794 InterPro:IPR011034
Pfam:PF00551 Pfam:PF02911 PROSITE:PS00373 SUPFAM:SSF50486
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008168
Gene3D:3.10.25.10 Gene3D:3.40.50.170 SUPFAM:SSF53328 eggNOG:COG0223
KO:K00604 GO:GO:0004479 InterPro:IPR015518 PANTHER:PTHR11138
TIGRFAMs:TIGR00460 OMA:GITLMQM ProtClustDB:PRK00005 PIR:H82372
RefSeq:NP_229704.1 PDB:3Q0I PDBsum:3Q0I ProteinModelPortal:Q9KVU4
SMR:Q9KVU4 DNASU:2614441 GeneID:2614441 KEGG:vch:VC0045
PATRIC:20079138 EvolutionaryTrace:Q9KVU4 GO:GO:0006431
Uniprot:Q9KVU4
Length = 315
Score = 157 (60.3 bits), Expect = 9.3e-22, Sum P(2) = 9.3e-22
Identities = 37/98 (37%), Positives = 60/98 (61%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
++I+FAGT AA L L +SEH I+ + T+P+ +GRG KL SPVK AL+H++ +
Sbjct: 5 LRIVFAGTPDFAARHLAALLSSEHEIIAVYTQPERPAGRGKKLTASPVKTLALEHNVPVY 64
Query: 61 QPISLKLNGKYHKIANETHKLLNKIEFDIMIVM--GIL 96
QP + K ++E+ + L + D+M+V+ G+L
Sbjct: 65 QPENFK--------SDESKQQLAALNADLMVVVAYGLL 94
Score = 149 (57.5 bits), Expect = 9.3e-22, Sum P(2) = 9.3e-22
Identities = 42/140 (30%), Positives = 76/140 (54%)
Query: 90 MIVMGILP---EDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLI 146
M+ + LP DTS ++ +KL +L +++ ++ I T + K + +YA +
Sbjct: 151 MLKIATLPIEASDTSASMYDKLAELGPQALLECLQDIAQG-TAVAVKQDDGLA-NYAHKL 208
Query: 147 KKNEAVLDWSLSAKTIMRKINAFNPFPGAKTYYISYQNKKKFLKIWKAHALSIESTKKPG 206
K EA ++WS +A I R I AFNP+P +++ +N +K+W+A + T+ PG
Sbjct: 209 SKEEARINWSDAATHIERCIRAFNPWP--MSHFEVAENS---IKVWQARVETRAVTQTPG 263
Query: 207 TILNVNFHNGILVVCGKNVI 226
TI+ + +GI V G++V+
Sbjct: 264 TIIQAD-KSGIYVATGQDVL 282
>TIGR_CMR|CPS_0019 [details] [associations]
symbol:CPS_0019 "methionyl-tRNA formyltransferase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004479
"methionyl-tRNA formyltransferase activity" evidence=ISS]
[GO:0006431 "methionyl-tRNA aminoacylation" evidence=ISS]
HAMAP:MF_00182 InterPro:IPR001555 InterPro:IPR002376
InterPro:IPR005793 InterPro:IPR005794 InterPro:IPR011034
Pfam:PF00551 Pfam:PF02911 PROSITE:PS00373 SUPFAM:SSF50486
GO:GO:0006413 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0008168
Gene3D:3.10.25.10 Gene3D:3.40.50.170 SUPFAM:SSF53328 eggNOG:COG0223
HOGENOM:HOG000261177 KO:K00604 GO:GO:0004479 InterPro:IPR015518
PANTHER:PTHR11138 TIGRFAMs:TIGR00460 OMA:GITLMQM HSSP:P77398
RefSeq:YP_266801.1 ProteinModelPortal:Q48AS9 SMR:Q48AS9
STRING:Q48AS9 GeneID:3518512 KEGG:cps:CPS_0019 PATRIC:21463473
BioCyc:CPSY167879:GI48-136-MONOMER Uniprot:Q48AS9
Length = 327
Score = 152 (58.6 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 43/101 (42%), Positives = 54/101 (53%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
+ IIFAGT AA L L NSEHNIV + PD +GRG KL K A++H I +
Sbjct: 5 LNIIFAGTPEFAAQHLAALINSEHNIVAVYCPPDKPAGRGKKLTACATKLLAIEHDIIVE 64
Query: 61 QPISLKLNGKYHKIANETHKLLNKIEFDIMIVMG---ILPE 98
QPI+ K N E + L K DIM+V+ +LPE
Sbjct: 65 QPINFK-N-------EEDQQQLAKYNADIMVVVAYGLLLPE 97
Score = 146 (56.5 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 39/152 (25%), Positives = 67/152 (44%)
Query: 99 DTSLTLQNKLEKLSKILIIDTIKKI---EYDMTKLFFKPQSNIGESYAPLIKKNEAVLDW 155
DTS +L KL L +++T+ + +Y + + +YA + K EA L+W
Sbjct: 163 DTSASLYEKLANLGPTALVNTLTIMAEPDYQASNHNIAQDDELA-TYAKKLDKTEAELNW 221
Query: 156 SLSAKTIMRKINAFNPFPGAKTYYISYQNKKKFLKIWKAHALSIESTKKPGTILNVNFHN 215
SA + RKI A+ P+P A+ + + K+ L+IW+A PGTI+ +
Sbjct: 222 QFSADELHRKIRAYIPWPVAQFTFTESEGKQHRLRIWQASVQEYRGNADPGTIIKAD-KE 280
Query: 216 GILVVCGKNVIXXXXXXXXXXXXISATEFING 247
GI V + ++ + +NG
Sbjct: 281 GIEVATTSGSLRLEVIQLPGKKALAVKDILNG 312
>TIGR_CMR|GSU_0130 [details] [associations]
symbol:GSU_0130 "methionyl-tRNA formyltransferase"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004479
"methionyl-tRNA formyltransferase activity" evidence=ISS]
[GO:0006431 "methionyl-tRNA aminoacylation" evidence=ISS]
HAMAP:MF_00182 InterPro:IPR002376 InterPro:IPR005793
InterPro:IPR005794 InterPro:IPR011034 Pfam:PF00551 Pfam:PF02911
PROSITE:PS00373 SUPFAM:SSF50486 GO:GO:0006413 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0008168 Gene3D:3.10.25.10
Gene3D:3.40.50.170 SUPFAM:SSF53328 eggNOG:COG0223
HOGENOM:HOG000261177 KO:K00604 GO:GO:0004479 InterPro:IPR015518
PANTHER:PTHR11138 TIGRFAMs:TIGR00460 OMA:GITLMQM RefSeq:NP_951192.1
ProteinModelPortal:Q74GW4 GeneID:2687945 KEGG:gsu:GSU0130
PATRIC:22023008 ProtClustDB:CLSK827657
BioCyc:GSUL243231:GH27-149-MONOMER Uniprot:Q74GW4
Length = 317
Score = 150 (57.9 bits), Expect = 1.0e-17, Sum P(2) = 1.0e-17
Identities = 43/151 (28%), Positives = 74/151 (49%)
Query: 97 PEDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLIKKNEAVLDWS 156
P++ + +L ++L +L I +T+ + KL + Q + YAP++KK + ++DW+
Sbjct: 160 PDEDAQSLHDRLSQLGAETIDETLDLLLAG--KLVREKQDDSLTCYAPMLKKEDGLVDWT 217
Query: 157 LSAKTIMRKINAFNPFPGAKTYYISYQNKKKFLKIWKAHALSIESTKKPGTILNVNFHNG 216
+ ++ F P+PGA T+ K LK+++ A++ E T +PG IL V G
Sbjct: 218 REPVQVKNQVRGFTPWPGAYTFLDG-----KTLKLYRV-AVAGE-TGEPGEILRVG-REG 269
Query: 217 ILVVCGKNVIXXXXXXXXXXXXISATEFING 247
ILV CG I + EF+ G
Sbjct: 270 ILVGCGSGSILIQELQLEGRKRLPTAEFLAG 300
Score = 120 (47.3 bits), Expect = 1.0e-17, Sum P(2) = 1.0e-17
Identities = 28/96 (29%), Positives = 47/96 (48%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
++IIF GT A L L ++ ++T+PD GRG KL PVK A +H I ++
Sbjct: 4 LRIIFMGTPEFACPTLRKLIERGEEVIAVVTQPDRPKGRGQKLVPPPVKALAQEHDIPVL 63
Query: 61 QPISLKLNGKYHKIANETHKLLNKIEFDIMIVMGIL 96
QP+ ++ +I L+ + F ++ +L
Sbjct: 64 QPLKVRTPESVDEIRRLAPDLIVVVAFGQILPQSLL 99
>TIGR_CMR|SPO_3216 [details] [associations]
symbol:SPO_3216 "methionyl-tRNA formyltransferase"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0004479
"methionyl-tRNA formyltransferase activity" evidence=ISS]
[GO:0006431 "methionyl-tRNA aminoacylation" evidence=ISS]
HAMAP:MF_00182 InterPro:IPR001555 InterPro:IPR002376
InterPro:IPR005793 InterPro:IPR005794 InterPro:IPR011034
Pfam:PF00551 Pfam:PF02911 PROSITE:PS00373 EMBL:CP000031
GenomeReviews:CP000031_GR SUPFAM:SSF50486 GO:GO:0006413
GO:GO:0008168 Gene3D:3.10.25.10 Gene3D:3.40.50.170 SUPFAM:SSF53328
eggNOG:COG0223 HOGENOM:HOG000261177 KO:K00604 GO:GO:0004479
InterPro:IPR015518 PANTHER:PTHR11138 TIGRFAMs:TIGR00460 OMA:GITLMQM
RefSeq:YP_168419.1 ProteinModelPortal:Q5LNI8 GeneID:3195992
KEGG:sil:SPO3216 PATRIC:23379879 ProtClustDB:CLSK934096
Uniprot:Q5LNI8
Length = 301
Score = 125 (49.1 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 43/153 (28%), Positives = 68/153 (44%)
Query: 95 ILPEDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLIKKNEAVLD 154
I E+T+ L ++L + LI++ + ++ ++T +PQ G +YA I K EA +D
Sbjct: 155 IRAEETTGALHDRLSAMGADLIVEALARLP-ELTP---EPQPEDGVTYAAKIDKAEARVD 210
Query: 155 WSLSAKTIMRKINAFNPFPGAKTYYISYQNKKKFLKIWKAHALSIESTKKPGTILNVNFH 214
W+ A I R+I +PFPGA T + K L A L E PG +L+
Sbjct: 211 WTRPAVAIDRQIRGLSPFPGAWTEIAG--ERVKLL----ASRLD-EGQGTPGEVLD---- 259
Query: 215 NGILVVCGKNVIXXXXXXXXXXXXISATEFING 247
+ + + CG I A F+ G
Sbjct: 260 DALTIACGTGAISLIRLQRAGKAAQDADIFLRG 292
Score = 99 (39.9 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 21/66 (31%), Positives = 36/66 (54%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
M+++F GT + +L+ L + H I + +P +GRG K +PV AL +++
Sbjct: 1 MRVVFMGTPDFSVPVLEALVAAGHEIAAVYCQPPRPAGRGKKDRPTPVHARALDLGLEVR 60
Query: 61 QPISLK 66
P+SLK
Sbjct: 61 HPVSLK 66
>TIGR_CMR|BA_4004 [details] [associations]
symbol:BA_4004 "methionyl-tRNA formyltransferase"
species:198094 "Bacillus anthracis str. Ames" [GO:0004479
"methionyl-tRNA formyltransferase activity" evidence=ISS]
[GO:0006431 "methionyl-tRNA aminoacylation" evidence=ISS]
HAMAP:MF_00182 InterPro:IPR001555 InterPro:IPR002376
InterPro:IPR005793 InterPro:IPR005794 InterPro:IPR011034
Pfam:PF00551 Pfam:PF02911 PROSITE:PS00373 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR SUPFAM:SSF50486
GO:GO:0006413 GO:GO:0008168 Gene3D:3.10.25.10 Gene3D:3.40.50.170
SUPFAM:SSF53328 eggNOG:COG0223 HOGENOM:HOG000261177 KO:K00604
GO:GO:0004479 InterPro:IPR015518 PANTHER:PTHR11138
TIGRFAMs:TIGR00460 RefSeq:NP_846246.1 RefSeq:YP_020645.1
RefSeq:YP_029968.1 PDB:4IQF PDBsum:4IQF ProteinModelPortal:Q81WH2
DNASU:1086742 EnsemblBacteria:EBBACT00000011019
EnsemblBacteria:EBBACT00000014211 EnsemblBacteria:EBBACT00000024452
GeneID:1086742 GeneID:2816238 GeneID:2852995 KEGG:ban:BA_4004
KEGG:bar:GBAA_4004 KEGG:bat:BAS3717 OMA:GITLMQM
ProtClustDB:PRK00005 BioCyc:BANT260799:GJAJ-3775-MONOMER
BioCyc:BANT261594:GJ7F-3892-MONOMER Uniprot:Q81WH2
Length = 314
Score = 119 (46.9 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 23/74 (31%), Positives = 43/74 (58%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
+K++F GT + +L L ++++ ++T+PD GR L +PVK A KH I ++
Sbjct: 2 IKVVFMGTPDFSVPVLRRLIEDGYDVIGVVTQPDRPVGRKKVLTPTPVKVEAEKHGIPVL 61
Query: 61 QPISLKLNGKYHKI 74
QP+ ++ +Y K+
Sbjct: 62 QPLRIREKDEYEKV 75
Score = 93 (37.8 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 32/171 (18%), Positives = 77/171 (45%)
Query: 81 LLNKIEF-DIM--IVMGILPEDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFFKPQSN 137
++ K++ DI+ + + I +T+ +L +KL + L+ T+ + + + +
Sbjct: 139 MVEKLDAGDILTQVEVEIEERETTGSLFDKLSEAGAHLLSKTVPLLIQGKLEPIKQNEEE 198
Query: 138 IGESYAPLIKKNEAVLDWSLSAKTIMRKINAFNPFPGAKTYYISYQNKKKFLKIWKAHAL 197
+ ++A IK+ + +DW+ + + + I NP+P A T + +K+W +
Sbjct: 199 V--TFAYNIKREQEKIDWTKTGEEVYNHIRGLNPWPVAYTTLAG-----QVVKVWWGEKV 251
Query: 198 SIESTKKPGTILNVNFHNGILVVCGKNV-IXXXXXXXXXXXXISATEFING 247
+ + + GTI+ + +G +V G + +S ++F+ G
Sbjct: 252 PVTKSAEAGTIVAIE-EDGFVVATGNETGVKITELQPSGKKRMSCSQFLRG 301
>TIGR_CMR|DET_1642 [details] [associations]
symbol:DET_1642 "methionyl-tRNA formyltransferase"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0004479
"methionyl-tRNA formyltransferase activity" evidence=ISS]
[GO:0006431 "methionyl-tRNA aminoacylation" evidence=ISS]
HAMAP:MF_00182 InterPro:IPR002376 InterPro:IPR005793
InterPro:IPR005794 InterPro:IPR011034 Pfam:PF00551 Pfam:PF02911
PROSITE:PS00373 SUPFAM:SSF50486 GO:GO:0006413 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0008168 Gene3D:3.10.25.10
Gene3D:3.40.50.170 SUPFAM:SSF53328 eggNOG:COG0223
HOGENOM:HOG000261177 KO:K00604 GO:GO:0004479 InterPro:IPR015518
PANTHER:PTHR11138 TIGRFAMs:TIGR00460 HSSP:P77398 RefSeq:YP_182335.1
ProteinModelPortal:Q3Z614 STRING:Q3Z614 GeneID:3229151
KEGG:det:DET1642 PATRIC:21610298 OMA:DWNKSAR ProtClustDB:CLSK836845
BioCyc:DETH243164:GJNF-1643-MONOMER Uniprot:Q3Z614
Length = 312
Score = 111 (44.1 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 38/154 (24%), Positives = 67/154 (43%)
Query: 95 ILPEDTSLTLQNKLEKLSKILIIDTIKKI-EYDMTKLFFKPQSNIGESYAPLIKKNEAVL 153
+ PEDT+ L +KL + L+++ + +I +L Q N +Y ++ K+ +
Sbjct: 158 VRPEDTTPLLADKLAFIGGCLLLELLSRIPSLPQPEL----QDNAKATYFGMVTKDMGQV 213
Query: 154 DWSLSAKTIMRKINAFNPFPGAKTYYISYQNKKKFLKIWKAHALSIESTKKPGTILNVNF 213
+W A I R++ AF P+PG T Y +K LKI +A + +P + V
Sbjct: 214 NWQTPAAEIERRVRAFFPWPGVFTSY-----NQKTLKILEARPQKLGLGLQPSQV-RVYE 267
Query: 214 HNGILVVCGKNVIXXXXXXXXXXXXISATEFING 247
+ I+V + SA +F+ G
Sbjct: 268 GDRIMVGSASGELEIIRLQLEGKAACSAADFLRG 301
Score = 96 (38.9 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
++I+F G+ A L L + I + T+PD +GRG +L PVK AL+ + +
Sbjct: 4 LRIVFMGSPEFALTPLKMLLAEGYAICGVYTQPDRPAGRGRELCPPPVKALALERGLAVY 63
Query: 61 QPISLK 66
QP SLK
Sbjct: 64 QPQSLK 69
>UNIPROTKB|P64134 [details] [associations]
symbol:fmt "Methionyl-tRNA formyltransferase" species:1773
"Mycobacterium tuberculosis" [GO:0040007 "growth" evidence=IMP]
HAMAP:MF_00182 InterPro:IPR002376 InterPro:IPR005793
InterPro:IPR005794 InterPro:IPR011034 Pfam:PF00551 Pfam:PF02911
PROSITE:PS00373 GO:GO:0040007 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR SUPFAM:SSF50486
GO:GO:0006413 EMBL:BX842576 GO:GO:0008168 Gene3D:3.10.25.10
Gene3D:3.40.50.170 SUPFAM:SSF53328 eggNOG:COG0223
HOGENOM:HOG000261177 KO:K00604 GO:GO:0004479 InterPro:IPR015518
PANTHER:PTHR11138 TIGRFAMs:TIGR00460 OMA:GITLMQM
ProtClustDB:PRK00005 PIR:C70901 RefSeq:NP_215922.1
RefSeq:NP_335901.1 RefSeq:YP_006514786.1 ProteinModelPortal:P64134
SMR:P64134 PRIDE:P64134 EnsemblBacteria:EBMYCT00000003750
EnsemblBacteria:EBMYCT00000072178 GeneID:13319995 GeneID:886706
GeneID:924522 KEGG:mtc:MT1450 KEGG:mtu:Rv1406 KEGG:mtv:RVBD_1406
PATRIC:18124958 TubercuList:Rv1406 Uniprot:P64134
Length = 312
Score = 112 (44.5 bits), Expect = 6.9e-10, Sum P(2) = 6.9e-10
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 1 MKIIFAGTSISAAAILDTLYNS-EHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKI 59
M+++FAGT A A L L S H+++ +LT+PD SGR K SPV + A + I +
Sbjct: 1 MRLVFAGTPEPALASLRRLIESPSHDVIAVLTRPDAASGRRGKPQPSPVAREAAERGIPV 60
Query: 60 IQP 62
++P
Sbjct: 61 LRP 63
Score = 92 (37.4 bits), Expect = 6.9e-10, Sum P(2) = 6.9e-10
Identities = 30/83 (36%), Positives = 39/83 (46%)
Query: 95 ILPEDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLIKKNEAVLD 154
I P DT+ L +L L+ T+ I D +L +PQ G S AP I A +
Sbjct: 156 IQPTDTAGDLLKRLAVSGAALLSTTLDGIA-DQ-RLTPRPQPADGVSVAPKITVANARVR 213
Query: 155 WSLSAKTIMRKINAFNPFPGAKT 177
W L A + R+I A P PGA T
Sbjct: 214 WDLPAAVVERRIRAVTPNPGAWT 236
>TIGR_CMR|ECH_0897 [details] [associations]
symbol:ECH_0897 "methionyl-tRNA formyltransferase"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0004479
"methionyl-tRNA formyltransferase activity" evidence=ISS]
[GO:0006431 "methionyl-tRNA aminoacylation" evidence=ISS]
HAMAP:MF_00182 InterPro:IPR002376 InterPro:IPR005793
InterPro:IPR005794 InterPro:IPR011034 Pfam:PF00551 Pfam:PF02911
PROSITE:PS00373 SUPFAM:SSF50486 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006413 GO:GO:0008168
Gene3D:3.10.25.10 Gene3D:3.40.50.170 SUPFAM:SSF53328 eggNOG:COG0223
HOGENOM:HOG000261177 KO:K00604 ProtClustDB:CLSK749560 GO:GO:0004479
InterPro:IPR015518 PANTHER:PTHR11138 TIGRFAMs:TIGR00460
RefSeq:YP_507692.1 ProteinModelPortal:Q2GFU1 STRING:Q2GFU1
GeneID:3927834 KEGG:ech:ECH_0897 PATRIC:20577194 OMA:KFRGASP
BioCyc:ECHA205920:GJNR-900-MONOMER Uniprot:Q2GFU1
Length = 303
Score = 89 (36.4 bits), Expect = 9.3e-07, Sum P(2) = 9.3e-07
Identities = 40/142 (28%), Positives = 70/142 (49%)
Query: 86 EFDIMIVMGI-LPEDTSL-TLQNKLEKLSKILIIDTIKKIEYDMTKLFFKPQSNIGESYA 143
E DI++ I + E ++ TL KL L ++I+ + I++ + K +N +Y
Sbjct: 146 EGDILLQRDIPIDEQDNIDTLSQKLSNLGSSMLIEVLNNIDHLVP---IKQNAN-DATYT 201
Query: 144 PLIKKNEAVLDWSLSAKTIMRKINAFNPFPGAKTYYISYQNKKKFLKIWKAHALSIESTK 203
I + +D + A+ I RKI A +P A ++ N K+ L+I KA+ +
Sbjct: 202 NKII--DFHIDCNEEAQVICRKIRAL--YPKAFLFF----NDKR-LRILKANYCPDSDLQ 252
Query: 204 --KPGTILNVNFH----NGILV 219
KPGT++N + H NG+L+
Sbjct: 253 NLKPGTVINSHMHIKCKNGVLI 274
Score = 88 (36.0 bits), Expect = 9.3e-07, Sum P(2) = 9.3e-07
Identities = 26/98 (26%), Positives = 50/98 (51%)
Query: 1 MKIIFAGT-SISAAAILDTLYNSEHNIVLILTKPDLHSGR-GMKLNFSPVKKYALKHSIK 58
MKIIF G+ S A+ L +H ++ + T+ +GR G L +P+ A +++I+
Sbjct: 1 MKIIFMGSPEFSVPALCALLEEKDHEVIAVYTRLPKPAGRRGKVLTKTPIHIIAEQNNIE 60
Query: 59 IIQPISLKLNGKYHKIANETHKLLNKIEFDIMIVMGIL 96
+ P SLK + + KI ++ + + ++I +L
Sbjct: 61 VNTPKSLKHDYEQEKIFALNPDVIVVVAYGLIIPEAVL 98
>TIGR_CMR|CJE_0093 [details] [associations]
symbol:CJE_0093 "methionyl-tRNA formyltransferase"
species:195099 "Campylobacter jejuni RM1221" [GO:0004479
"methionyl-tRNA formyltransferase activity" evidence=ISS]
[GO:0006431 "methionyl-tRNA aminoacylation" evidence=ISS]
HAMAP:MF_00182 InterPro:IPR001555 InterPro:IPR002376
InterPro:IPR005793 InterPro:IPR005794 InterPro:IPR011034
Pfam:PF00551 Pfam:PF02911 PROSITE:PS00373 SUPFAM:SSF50486
GO:GO:0006413 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0008168
Gene3D:3.10.25.10 Gene3D:3.40.50.170 SUPFAM:SSF53328 eggNOG:COG0223
HOGENOM:HOG000261177 KO:K00604 GO:GO:0004479 InterPro:IPR015518
PANTHER:PTHR11138 TIGRFAMs:TIGR00460 ProtClustDB:PRK00005
RefSeq:YP_178117.1 ProteinModelPortal:Q5HX68 STRING:Q5HX68
GeneID:3230856 KEGG:cjr:CJE0093 PATRIC:20041893 OMA:FDKITPK
BioCyc:CJEJ195099:GJC0-97-MONOMER Uniprot:Q5HX68
Length = 305
Score = 89 (36.4 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 36/101 (35%), Positives = 49/101 (48%)
Query: 2 KIIFAGTSISAAAILDTLYNSEH-NIVLILTKPDLHSGRGMKLNFSPVKKYALKH--SIK 58
KIIF GT A IL L +E+ +V + T+PD GR L S K + ++ SI
Sbjct: 3 KIIFMGTPSYATCILKALVENENFKLVALFTQPDKAVGRKQILTPSDTKAFLSQNYPSIP 62
Query: 59 IIQPISLKLNGKYHKIANETHKLLNKIEFDIMIVMG-ILPE 98
I P SLK +I K LN +F ++ G ILP+
Sbjct: 63 IFTPSSLKDKNIIREI-----KDLNP-DFIVVAAYGKILPK 97
Score = 84 (34.6 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 41/177 (23%), Positives = 75/177 (42%)
Query: 77 ETHKLLNKIEFDIMIVMGILPEDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFFKPQS 136
+T +L +E DI + S + L L+ LI+ T+ + +D K+ K Q
Sbjct: 145 DTGAILESLECDIK-------DKNSSEVFELLANLAAKLILSTL--LNFD--KITPKKQE 193
Query: 137 NIGESYAPLIKKNEAVLDWSLSAKTIMRKINAFNPFPGAKTYYISYQNKKKFLKIWKAHA 196
+ IKK + +++ +A+ + +K AF P+PG + +N KFL++
Sbjct: 194 ESLATLCRKIKKEDGLINLQ-NARELYQKYLAFTPWPG-----VFLENGLKFLELELVDE 247
Query: 197 LSIESTKKPGTILNVNFHNGILVVCGKNVIXXXXXXXXXXXXISATEFINGCIKNIK 253
L + K G IL + L+ C + V+ + ++NG K +K
Sbjct: 248 L--KQNAKMGEILELE-KESFLLACKQGVLRIKKLQESGKKALDGRTYLNG--KRLK 299
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.137 0.389 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 258 246 0.0010 113 3 11 22 0.42 33
32 0.46 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 14
No. of states in DFA: 599 (64 KB)
Total size of DFA: 178 KB (2103 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.56u 0.17s 22.73t Elapsed: 00:00:02
Total cpu time: 22.57u 0.17s 22.74t Elapsed: 00:00:02
Start: Thu Aug 15 17:35:22 2013 End: Thu Aug 15 17:35:24 2013