RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5230
(258 letters)
>d1fmta1 b.46.1.1 (A:207-314) Methionyl-tRNAfmet formyltransferase,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 108
Score = 73.2 bits (179), Expect = 3e-17
Identities = 39/102 (38%), Positives = 52/102 (50%), Gaps = 6/102 (5%)
Query: 146 IKKNEAVLDWSLSAKTIMRKINAFNPFPGAKTYYISYQNKKKFLKIWKAHALSIESTKKP 205
+ K EA +DWSLSA + R I AFNP+P + K+WKA + + P
Sbjct: 1 LSKEEARIDWSLSAAQLERCIRAFNPWPMSWLEIEGQPV-----KVWKASVIDTATNAAP 55
Query: 206 GTILNVNFHNGILVVCGKNVIKLLELQKNNKKKISATEFING 247
GTIL N GI V G ++ LL LQ KK +SA + +N
Sbjct: 56 GTILEAN-KQGIQVATGDGILNLLSLQPAGKKAMSAQDLLNS 96
>d2bw0a1 b.46.1.1 (A:204-307) 10-formyltetrahydrofolate
dehydrogenase domain 2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 104
Score = 67.9 bits (165), Expect = 3e-15
Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 19/110 (17%)
Query: 147 KKNEAVLDWSLSAKTIMRKINAFNPFPGAKTYYISYQNKKKFLKIWKAHALS-------- 198
KK A ++W A+ I I + P + ++ L + + +
Sbjct: 2 KKETAKINWDQPAEAIHNWIRGNDKVP-----GAWTEACEQKLTFFNSTLNTSGLVPEGD 56
Query: 199 ---IESTKKPGTILNVNFHNGILVVCGKNVIKLLELQKNNKKKISATEFI 245
I +PG + IL ++ + +Q + K I A+ F
Sbjct: 57 ALPIPGAHRPGVVTK---AGLILFGNDDKMLLVKNIQLEDGKMILASNFF 103
>d2blna1 b.46.1.1 (A:204-304) Polymyxin resistance protein ArnA,
domain 2 {Escherichia coli [TaxId: 562]}
Length = 101
Score = 65.6 bits (159), Expect = 1e-14
Identities = 17/100 (17%), Positives = 42/100 (42%), Gaps = 9/100 (9%)
Query: 149 NEAVLDWSLSAKTIMRKINAF-NPFPGAKTYYISYQNKKKFLKIWKAHALSIESTKKPGT 207
+++ L+W A + + A +P+PGA +Y + +W + S +PG+
Sbjct: 1 DDSFLEWHKPASVLHNMVRAVADPWPGAFSYV-----GNQKFTVWSSRVHPHASKAQPGS 55
Query: 208 ILNVNFHNGILVVCGKNVIKLLELQKNNKKKISATEFING 247
+ +L+ CG ++++ Q + + ++
Sbjct: 56 V---ISVAPLLIACGDGALEIVTGQAGDGITMQGSQLAQT 92
>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 203
Score = 57.8 bits (138), Expect = 9e-11
Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 3/93 (3%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
MK + ++ L + + I I T D G K + V + A + I +
Sbjct: 1 MKTVVFAYHDMGCLGIEALLAAGYEISAIFTHTD---NPGEKAFYGSVARLAAERGIPVY 57
Query: 61 QPISLKLNGKYHKIANETHKLLNKIEFDIMIVM 93
P ++ +IA + ++ + +I
Sbjct: 58 APDNVNHPLWVERIAQLSPDVIFSFYYRHLIYD 90
Score = 30.0 bits (66), Expect = 0.20
Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 90 MIVMGILPEDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFFKPQSNIGESYAPLIK 147
+ + I P+D ++TL +KL ++ L+ T+ I++ + Q +
Sbjct: 147 QLRIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHG--NILEIAQRENEATCFGRRT 202
>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase
{Escherichia coli [TaxId: 562]}
Length = 206
Score = 55.8 bits (133), Expect = 4e-10
Identities = 33/91 (36%), Positives = 53/91 (58%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
++IIFAGT AA LD L +S HN+V + T+PD +GRG KL SPVK A + + +
Sbjct: 4 LRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVF 63
Query: 61 QPISLKLNGKYHKIANETHKLLNKIEFDIMI 91
QP+SL+ +A ++ + + +++
Sbjct: 64 QPVSLRPQENQQLVAELQADVMVVVAYGLIL 94
Score = 33.4 bits (75), Expect = 0.014
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 90 MIVMGILPEDTSLTLQNKLEKLSKILIIDTIKKIEYDMTKLFFKPQSNIGESYAP 144
+ I EDTS TL +KL +L +I T+K++ + Q +YA
Sbjct: 153 KLSCPITAEDTSGTLYDKLAELGPQGLITTLKQLADG--TAKPEVQDETLVTYAE 205
>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate
dehydrogenase domain 1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 203
Score = 50.8 bits (120), Expect = 2e-08
Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 9/93 (9%)
Query: 1 MKIIFAGTSISAAAILDTLYNSEHNIVLILTKPDLHSGRGMKLNFSPVKKYALKHSIKII 60
MKI G S+ + L H +V + T PD P+ A K + +
Sbjct: 1 MKIAVIGQSLFGQEVYCHLRKEGHEVVGVFTVPDKDGKA------DPLGLEAEKDGVPVF 54
Query: 61 QPISLKLNGKYHKIANETHKLLNKIEFDIMIVM 93
+ + + + ++ ++
Sbjct: 55 KYSR---WRAKGQALPDVVAKYQALGAELNVLP 84
Score = 29.2 bits (64), Expect = 0.35
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 90 MIVMGILPEDTSLTLQNK-LEKLSKILIIDTIKKIEYDMTKLFFKPQSNIGESYA 143
+LP+DT TL N+ L ++ ++ I K PQ G +Y
Sbjct: 149 QKECEVLPDDTVSTLYNRFLFPEGIKGMVQAVRLIAEG--KAPRLPQPEEGATYE 201
>d1k04a_ a.24.14.1 (A:) FAT domain of focal adhesion kinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 142
Score = 29.3 bits (66), Expect = 0.26
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 45 FSPVKK--YALKHSIKIIQPISLKLNGKYHKIANETHKLLNKIEFDIMIVMGILPEDTSL 102
VK+ AL+ + + L H+ KLLN +++ M + +
Sbjct: 44 VPMVKEVGLALRTLLATVDETIPLLPASTHREIEMAQKLLNSDLGELINKMKLAQQYVMT 103
Query: 103 TLQNKLEK 110
+LQ + +K
Sbjct: 104 SLQQEYKK 111
>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 245
Score = 27.3 bits (60), Expect = 1.5
Identities = 7/51 (13%), Positives = 23/51 (45%)
Query: 199 IESTKKPGTILNVNFHNGILVVCGKNVIKLLELQKNNKKKISATEFINGCI 249
+++ + T + + +G++ K V+ L + +NK+ + + +
Sbjct: 27 MKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAV 77
>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 233
Score = 27.0 bits (59), Expect = 2.1
Identities = 7/51 (13%), Positives = 19/51 (37%)
Query: 199 IESTKKPGTILNVNFHNGILVVCGKNVIKLLELQKNNKKKISATEFINGCI 249
+ + + + NG+++ K +L +++ K T+ I
Sbjct: 25 LAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVY 75
>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 250
Score = 26.6 bits (58), Expect = 2.6
Identities = 10/51 (19%), Positives = 19/51 (37%)
Query: 199 IESTKKPGTILNVNFHNGILVVCGKNVIKLLELQKNNKKKISATEFINGCI 249
+ + K+ T L + NG+++ K L + + K T I
Sbjct: 25 LTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVY 75
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 26.2 bits (57), Expect = 4.5
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 199 IESTKKPGTILNVNFHNGILVVCGKNVI-KLLELQKNNKKKISATEFI 245
+E+ GT L + ++G+L+ + I KLL+ ++K E +
Sbjct: 24 MEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDM 71
>d2op5a1 d.58.4.22 (A:4-115) Hypothetical protein GOS_7213774
{environmental samples}
Length = 112
Score = 25.2 bits (55), Expect = 4.6
Identities = 11/99 (11%), Positives = 27/99 (27%), Gaps = 12/99 (12%)
Query: 124 EYDMTKLFFKPQSNIGESYAPLIKKNEAVLDWSLSAKTIMRKINAFNPFPGAKTYYISYQ 183
E ++ E + L I + +N + Y
Sbjct: 17 ENELELFLKSLDEVWSEDLYSRLSAA------GLIRHVISK---VWNKEQHRISMVFEYD 67
Query: 184 NKKKF---LKIWKAHALSIESTKKPGTILNVNFHNGILV 219
+K+ + +I K + ++ + G++V
Sbjct: 68 SKEGYQKCQEIIDKEFGITLKEKLKKFVFKIHNNRGVVV 106
>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 25.8 bits (56), Expect = 4.8
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 199 IESTKKPGTILNVNFHNGILVVCGKNVI-KLLELQKNNKKKISATEFINGCI 249
+ES GT + + +GI++ + V LLE + +K + I +
Sbjct: 25 LESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAV 76
>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit
(non-catalytic) {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 221
Score = 25.8 bits (56), Expect = 5.4
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 199 IESTKKPGTILNVNFHNGILVVCGKNVIKLLELQKNNKKKISATEFINGCI 249
E+ KK T L + F NG+L++ K V L Q + +K +++
Sbjct: 16 REAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVT 66
>d2axtc1 f.55.1.1 (C:27-473) Photosystem II CP43 protein PsbC
{Thermosynechococcus elongatus [TaxId: 146786]}
Length = 447
Score = 25.5 bits (56), Expect = 6.7
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 139 GESYAPLIKKNEAVLDWSLSAKTIMRKINAF 169
G + I EA L +SL A ++M I
Sbjct: 232 GWARRAFIWSGEAYLSYSLGALSMMGFIATC 262
>d1omra_ a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId: 9913]}
Length = 201
Score = 25.2 bits (54), Expect = 7.0
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 230 ELQKNNKKKISATEFINGCIKN 251
K + K++ EFI G + N
Sbjct: 157 FFGKKDDDKLTEKEFIEGTLAN 178
>d2od6a1 d.58.4.22 (A:1-109) Hypothetical protein GOS_2359375
{environmental samples}
Length = 109
Score = 24.4 bits (53), Expect = 7.5
Identities = 12/100 (12%), Positives = 28/100 (28%), Gaps = 14/100 (14%)
Query: 124 EYDMTKLFFKPQSNIGESYAPLIKKNEAVLDWSLSAKTIMRKINAFNPFPGAKTYYI-SY 182
+ DM +LF + +K L ++ R +N + Y
Sbjct: 17 DVDM-ELFIDAVEKTAPVWVKEMKSR------GLLKFSMNR---VWNKGEVFRVVMTYEY 66
Query: 183 QNKKKF---LKIWKAHALSIESTKKPGTILNVNFHNGILV 219
+++ F + + + T ++V
Sbjct: 67 KDRASFEANIAYLEDTFGKNPVFLQLVTTAKFTTSRCLVV 106
>d1zunb2 b.44.1.1 (B:330-434) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain 3-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 105
Score = 24.2 bits (52), Expect = 8.6
Identities = 11/70 (15%), Positives = 22/70 (31%)
Query: 49 KKYALKHSIKIIQPISLKLNGKYHKIANETHKLLNKIEFDIMIVMGILPEDTSLTLQNKL 108
KKY +K + + + + E + +I V L +L +
Sbjct: 22 KKYDIKRATSYVPGSIASITHRVDVNTLEEGPASSLQLNEIGRVKVSLDAPIALDGYSSN 81
Query: 109 EKLSKILIID 118
++ID
Sbjct: 82 RTTGAFIVID 91
>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 242
Score = 25.0 bits (54), Expect = 9.6
Identities = 8/51 (15%), Positives = 19/51 (37%)
Query: 199 IESTKKPGTILNVNFHNGILVVCGKNVIKLLELQKNNKKKISATEFINGCI 249
+E+ K T + + G+++ K L + +K + I +
Sbjct: 20 LEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAM 70
>d1jbaa_ a.39.1.5 (A:) Guanylate cyclase activating protein 2,
GCAP-2 {Cow (Bos taurus) [TaxId: 9913]}
Length = 189
Score = 24.8 bits (53), Expect = 10.0
Identities = 10/99 (10%), Positives = 29/99 (29%), Gaps = 6/99 (6%)
Query: 153 LDWSLSAKTIMRKINAFNPFPGAKTYYISYQNKKKFLKIWKAHALSIESTKKPGTILNVN 212
L+ L + F + + I Q ++ + + +
Sbjct: 84 LNLVLRGTLEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLL 143
Query: 213 FHNGILVVCGKNVIKLLELQKNNKKKISATEFINGCIKN 251
++ + + +N ++S EF+ G ++
Sbjct: 144 TPEEVV----DRIFL--LVDENGDGQLSLNEFVEGARRD 176
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.384
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 938,274
Number of extensions: 43970
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 36
Length of query: 258
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 175
Effective length of database: 1,268,006
Effective search space: 221901050
Effective search space used: 221901050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.0 bits)