BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5231
(148 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TRB|A Chain A, Convergent Evolution Of Similar Function In Two
Structurally Divergent Enzymes
Length = 320
Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 83/165 (50%), Gaps = 37/165 (22%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
VIGGGNTAVEEALYLSNIA +V LIHR + R EKILI RLM KV G I + + +
Sbjct: 150 VIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEE 209
Query: 80 IIGN----------------------------------NTV--TGQLEMNDGYIKTKLNK 103
+ G+ NT GQLE+ +GYIK +
Sbjct: 210 VTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGI 269
Query: 104 KTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
T T+I GVF + + + + G+GCMAALDA+RYL
Sbjct: 270 HGNATQTSIPGVFAAGDVMD-HIYRQAITSAGTGCMAALDAERYL 313
>pdb|1F6M|A Chain A, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|B Chain B, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|E Chain E, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|F Chain F, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 320
Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 83/165 (50%), Gaps = 37/165 (22%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
VIGGGNTAVEEALYLSNIA +V LIHR + R EKILI RLM KV G I + + +
Sbjct: 150 VIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEE 209
Query: 80 IIGN----------------------------------NTV--TGQLEMNDGYIKTKLNK 103
+ G+ NT GQLE+ +GYIK +
Sbjct: 210 VTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGI 269
Query: 104 KTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
T T+I GVF + + + + G+GCMAALDA+RYL
Sbjct: 270 HGNATQTSIPGVFAAGDVMD-HIYRQAITSAGTGCMAALDAERYL 313
>pdb|1TDF|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin
Reductase Refined At 2 Angstrom Resolution: Implications
For A Large Conformational Change During Catalysis
Length = 316
Score = 103 bits (258), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 83/165 (50%), Gaps = 37/165 (22%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
VIGGGNTAVEEALYLSNIA +V LIHR + R EKILI RLM KV G I + + +
Sbjct: 150 VIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEE 209
Query: 80 IIGN----------------------------------NTV--TGQLEMNDGYIKTKLNK 103
+ G+ NT GQLE+ +GYIK +
Sbjct: 210 VTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGI 269
Query: 104 KTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
T T+I GVF + + + + G+GCMAALDA+RYL
Sbjct: 270 HGNATQTSIPGVFAAGDVMD-HIYRQAITSAGTGCMAALDAERYL 313
>pdb|1TDE|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin
Reductase Refined At 2 Angstrom Resolution: Implications
For A Large Conformational Change During Catalysis
Length = 316
Score = 103 bits (258), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 83/165 (50%), Gaps = 37/165 (22%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
VIGGGNTAVEEALYLSNIA +V LIHR + R EKILI RLM KV G I + + +
Sbjct: 150 VIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEE 209
Query: 80 IIGN----------------------------------NTV--TGQLEMNDGYIKTKLNK 103
+ G+ NT GQLE+ +GYIK +
Sbjct: 210 VTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGI 269
Query: 104 KTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
T T+I GVF + + + + G+GCMAALDA+RYL
Sbjct: 270 HGNATQTSIPGVFAAGDVMD-HIYRQAITSAGTGCMAALDAERYL 313
>pdb|1CL0|A Chain A, Crystal Structure Of Reduced Thioredoxin Reductase From
Escherichia Coli
Length = 320
Score = 103 bits (257), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 83/165 (50%), Gaps = 37/165 (22%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
VIGGGNTAVEEALYLSNIA +V LIHR + R EKILI RLM KV G I + + +
Sbjct: 150 VIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEE 209
Query: 80 IIGN----------------------------------NTV--TGQLEMNDGYIKTKLNK 103
+ G+ NT GQLE+ +GYIK +
Sbjct: 210 VTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGI 269
Query: 104 KTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
T T+I GVF + + + + G+GCMAALDA+RYL
Sbjct: 270 HGNATQTSIPGVFAAGDVMD-HIYRQAITSAGTGCMAALDAERYL 313
>pdb|2A87|A Chain A, Crystal Structure Of M. Tuberculosis Thioredoxin Reductase
pdb|2A87|B Chain B, Crystal Structure Of M. Tuberculosis Thioredoxin Reductase
Length = 335
Score = 79.3 bits (194), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 78/161 (48%), Gaps = 37/161 (22%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
VIGGG++A+EEA +L+ A+ VTL+HR ++ R KI++DR N KI H V
Sbjct: 160 VIGGGDSAMEEATFLTRFARSVTLVHRRDEFRASKIMLDRAR---NNDKIRFLTNHTVVA 216
Query: 80 IIGNNTVTG-----------------------QLEMNDGYIKTKLN-KKTGY-------T 108
+ G+ TVTG E G ++ ++ GY T
Sbjct: 217 VDGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVREAIDVDPDGYVLVQGRTT 276
Query: 109 STNISGVFCRWR-CTRLYFIDKQLLALGSGCMAALDAQRYL 148
ST++ GVF R Y + + A GSGC AA+DA+R+L
Sbjct: 277 STSLPGVFAAGDLVDRTY--RQAVTAAGSGCAAAIDAERWL 315
>pdb|1VDC|A Chain A, Structure Of Nadph Dependent Thioredoxin Reductase
Length = 333
Score = 68.9 bits (167), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 40/164 (24%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDR--------------LMQKVN 65
VIGGG++A+EEA +L+ KV +IHR + R KI+ R +++
Sbjct: 164 VIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQQRALSNPKIDVIWNSSVVEAYG 223
Query: 66 EGKIDI----KLKHIVHK------------IIGNNTVT----GQLEMN-DGYIKTKLNKK 104
+G+ D+ K+K++V IG+ T G +E++ DGY+ T K
Sbjct: 224 DGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLDGGVELDSDGYVVT----K 279
Query: 105 TGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
G T T++ GVF + + + A G+GCMAALDA+ YL
Sbjct: 280 PGTTQTSVPGVFAAGDVQDKKY-RQAITAAGTGCMAALDAEHYL 322
>pdb|2WHD|A Chain A, Barley Nadph-Dependent Thioredoxin Reductase 2
pdb|2WHD|B Chain B, Barley Nadph-Dependent Thioredoxin Reductase 2
Length = 351
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 79/164 (48%), Gaps = 40/164 (24%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLM-----QKVNEGKI----- 69
VIGGG++A+EE +L+ +V +IHR R KI+ R + Q V + ++
Sbjct: 182 VIGGGDSAMEEGNFLTKYGSQVYIIHRRNTFRASKIMQARALSNPKIQVVWDSEVVEAYG 241
Query: 70 --------DIKLKHIVHK------------IIGNNTVT----GQLEMN-DGYIKTKLNKK 104
+K+K++V IG+ T GQLE++ DGY+ T K
Sbjct: 242 GAGGGPLAGVKVKNLVTGEVSDLQVSGLFFAIGHEPATKFLNGQLELHADGYVAT----K 297
Query: 105 TGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
G T T++ GVF + + + A GSGCMAALDA+ YL
Sbjct: 298 PGSTHTSVEGVFAAGDVQDKKY-RQAITAAGSGCMAALDAEHYL 340
>pdb|4A5L|A Chain A, Crystal Structure Of The Thioredoxin Reductase From
Entamoeba Histolytica
pdb|4A5L|B Chain B, Crystal Structure Of The Thioredoxin Reductase From
Entamoeba Histolytica
pdb|4A65|A Chain A, Crystal Structure Of The Thioredoxin Reductase From
Entamoeba Histolytica With Aucn
pdb|4A65|B Chain B, Crystal Structure Of The Thioredoxin Reductase From
Entamoeba Histolytica With Aucn
Length = 314
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 80/163 (49%), Gaps = 42/163 (25%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVN------------EG 67
V+GGG+ A+EEAL+L+ KV ++HR + R K + +R++ EG
Sbjct: 157 VVGGGDAAMEEALHLTKYGSKVIILHRRDAFRASKTMQERVLNHPKIEVIWNSELVELEG 216
Query: 68 KIDIKLKHIVHKI----------------IGNNT----VTGQLE-MNDGYIKTKLNKKTG 106
D+ +H + IG++ + GQ++ +DGYI T+ K
Sbjct: 217 DGDLLNGAKIHNLVSGEYKVVPVAGLFYAIGHSPNSKFLGGQVKTADDGYILTEGPK--- 273
Query: 107 YTSTNISGVF-CRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
T++ GVF C C R+Y + ++A GSGCMAAL +++L
Sbjct: 274 ---TSVDGVFACGDVCDRVY--RQAIVAAGSGCMAALSCEKWL 311
>pdb|3F8P|A Chain A, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|B Chain B, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|C Chain C, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|D Chain D, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8R|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|C Chain C, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|D Chain D, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
Length = 323
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 29/158 (18%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKI------DIKL 73
VIGGG++A+E A LS+ + KV LIHR + + + I ++ + +K N + +IK
Sbjct: 159 VIGGGDSALEGAEILSSYSTKVYLIHRRDTFKAQPIYVETVKKKPNVEFVLNSVVKEIKG 218
Query: 74 KHIVHKIIGNNTVTG---QLEMNDGYIKTKLNKKTGYTSTN------------------- 111
+V +++ N TG +L +N +I+ + T + +N
Sbjct: 219 DKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTS 278
Query: 112 ISGVFCRWRCTRLYFIDKQLL-ALGSGCMAALDAQRYL 148
+ GVF CT + +Q++ A+ G +AA A RY+
Sbjct: 279 VPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYRYV 316
>pdb|3F8D|A Chain A, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|B Chain B, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|C Chain C, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|D Chain D, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
Length = 323
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 29/158 (18%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKI------DIKL 73
VIGGG++A+E A LS+ + KV LIHR + + + I ++ + +K N + +IK
Sbjct: 159 VIGGGDSALEGAEILSSYSTKVYLIHRRDTFKAQPIYVETVKKKPNVEFVLNSVVKEIKG 218
Query: 74 KHIVHKIIGNNTVTG---QLEMNDGYIKTKLNKKTGYTSTN------------------- 111
+V +++ N TG +L +N +I+ + T + +N
Sbjct: 219 DKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTS 278
Query: 112 ISGVFCRWRCTRLYFIDKQLL-ALGSGCMAALDAQRYL 148
+ GVF CT + +Q++ A+ G +AA A RY+
Sbjct: 279 VPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYRYV 316
>pdb|2Q0K|A Chain A, Oxidized Thioredoxin Reductase From Helicobacter Pylori In
Complex With Nadp+
pdb|2Q0K|B Chain B, Oxidized Thioredoxin Reductase From Helicobacter Pylori In
Complex With Nadp+
pdb|2Q0L|A Chain A, Helicobacter Pylori Thioredoxin Reductase Reduced By
Sodium Dithionite In Complex With Nadp+
pdb|2Q0L|B Chain B, Helicobacter Pylori Thioredoxin Reductase Reduced By
Sodium Dithionite In Complex With Nadp+
pdb|3ISH|A Chain A, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
pdb|3ISH|B Chain B, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
pdb|3ISH|C Chain C, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
Length = 311
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
V+GGG+TAVEEA+YL+NI KKV LIHR + RC I ++ N KI+ ++V +
Sbjct: 148 VLGGGDTAVEEAIYLANICKKVYLIHRRDGFRCAPITLEHAK---NNDKIEFLTPYVVEE 204
Query: 80 IIGNNTVTGQLEMND 94
I G+ + L + +
Sbjct: 205 IKGDASGVSSLSIKN 219
>pdb|4GCM|A Chain A, Crystal Structure Of A Thioredoxine Reductase (Trxb) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 1.80 A
Resolution
pdb|4GCM|B Chain B, Crystal Structure Of A Thioredoxine Reductase (Trxb) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 1.80 A
Resolution
Length = 312
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 76/160 (47%), Gaps = 35/160 (21%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
VIGGG++AVEE +L+ A KVT++HR ++LR ++IL DR + KID H +
Sbjct: 150 VIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKN---DKIDFIWSHTLKS 206
Query: 80 I------IGNNTVT----GQLEMN--DG---YIKTK----------LNKKTGY------T 108
I +G+ T+T G E + DG YI K + GY
Sbjct: 207 INEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGXKPLTAPFKDLGITNDVGYIVTKDDX 266
Query: 109 STNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
+T++ G+F R + + + A G G +AA A Y+
Sbjct: 267 TTSVPGIFAAGDV-RDKGLRQIVTATGDGSIAAQSAAEYI 305
>pdb|3D8X|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nadph
Dependent Thioredoxin Reductase 1
pdb|3D8X|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Nadph
Dependent Thioredoxin Reductase 1
Length = 326
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 38/162 (23%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDR--------------LMQKVN 65
VIGGG++A EEA +L+ KV ++ R + LR I+ R ++
Sbjct: 166 VIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRASTIMQKRAEKNEKIEILYNTVALEAKG 225
Query: 66 EGKI---------------DIKLKHIVHKI---IGNNTVTGQLEMND-GYIKTKLNKKTG 106
+GK+ D+ + + + I V GQ++ ++ GYIKT G
Sbjct: 226 DGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAGQVDTDEAGYIKT----VPG 281
Query: 107 YTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
+ T++ G F + + + + GSGCMAALDA++YL
Sbjct: 282 SSLTSVPGFFAAGDVQDSKY-RQAITSAGSGCMAALDAEKYL 322
>pdb|3ITJ|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
pdb|3ITJ|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
pdb|3ITJ|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
pdb|3ITJ|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
Length = 338
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 38/162 (23%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDR--------------LMQKVN 65
VIGGG++A EEA +L+ KV ++ R + LR I+ R ++
Sbjct: 178 VIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRASTIMQKRAEKNEKIEILYNTVALEAKG 237
Query: 66 EGKI---------------DIKLKHIVHKI---IGNNTVTGQLEMND-GYIKTKLNKKTG 106
+GK+ D+ + + + I V GQ++ ++ GYIKT G
Sbjct: 238 DGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAGQVDTDEAGYIKT----VPG 293
Query: 107 YTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
+ T++ G F + + + + GSGCMAALDA++YL
Sbjct: 294 SSLTSVPGFFAAGDVQDSKY-RQAITSAGSGCMAALDAEKYL 334
>pdb|3R9U|A Chain A, Thioredoxin-Disulfide Reductase From Campylobacter Jejuni.
pdb|3R9U|B Chain B, Thioredoxin-Disulfide Reductase From Campylobacter Jejuni
Length = 315
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 58/99 (58%), Gaps = 15/99 (15%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
V+GGG+TA+EEALYL+NI K+ LIHR ++ R ++++ K NE KI++ V +
Sbjct: 152 VLGGGDTALEEALYLANICSKIYLIHRRDEFRAAPSTVEKV--KKNE-KIELITSASVDE 208
Query: 80 IIGNNT-VTG-QLEMNDGYIKTKLNKKTGYTSTNISGVF 116
+ G+ V G ++++ DG I+ N+ G+F
Sbjct: 209 VYGDKXGVAGVKVKLKDGSIR----------DLNVPGIF 237
>pdb|2Q7V|A Chain A, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
pdb|2Q7V|B Chain B, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
Length = 325
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
VIGGG+ AVEE ++L+ A +VT+IHR + LR K+ R K+ V +
Sbjct: 157 VIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRANKVAQARAFANP---KMKFIWDTAVEE 213
Query: 80 IIGNNTVTG 88
I G ++V+G
Sbjct: 214 IQGADSVSG 222
>pdb|2ZBW|A Chain A, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
pdb|2ZBW|B Chain B, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
Length = 335
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 42/67 (62%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
++GGG++AV+ AL L + A+++TLIHR + R + + L + EG++++ + + +
Sbjct: 157 IVGGGDSAVDWALNLLDTARRITLIHRRPQFRAHEASVKELXKAHEEGRLEVLTPYELRR 216
Query: 80 IIGNNTV 86
+ G+ V
Sbjct: 217 VEGDERV 223
>pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide
Reductase Ahpf From E.Coli
Length = 310
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 37/161 (22%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
VIGGGN+ VE A+ L+ I + VTL+ +++ +++L D+L N +DI L +
Sbjct: 149 VIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKLRSLKN---VDIILNAQTTE 205
Query: 80 IIGNNTVTGQLEMNDG-------------YIKTKLNKKTGY------------------T 108
+ G+ + LE D +++ L T +
Sbjct: 206 VKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGAVERNRMGEIIIDAKC 265
Query: 109 STNISGVFCRWRCTRLYFIDKQ-LLALGSGCMAALDAQRYL 148
TN+ GVF CT + + KQ ++A G G A+L A YL
Sbjct: 266 ETNVKGVFAAGDCTTVPY--KQIIIATGEGAKASLSAFDYL 304
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 37/161 (22%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
VIGGGN+ VE A+ L+ I + VTL+ +++ +++L D++ N +DI L +
Sbjct: 360 VIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKVRSLKN---VDIILNAQTTE 416
Query: 80 IIGNNTVTGQLEMNDG-------------YIKTKLNKKTGY------------------T 108
+ G+ + LE D +++ L T +
Sbjct: 417 VKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGALERNRMGEIIIDAKC 476
Query: 109 STNISGVFCRWRCTRLYFIDKQ-LLALGSGCMAALDAQRYL 148
T++ GVF CT + + KQ ++A G G A+L A YL
Sbjct: 477 ETSVKGVFAAGDCTTVPY--KQIIIATGEGAKASLSAFDYL 515
>pdb|3LZW|A Chain A, Crystal Structure Of Ferredoxin-Nadp+ Oxidoreductase From
Bacillus Subtilis (Form I)
pdb|3LZX|A Chain A, Crystal Structure Of Ferredoxin-Nadp+ Oxidoreductase From
Bacillus Subtilis (Form Ii)
pdb|3LZX|B Chain B, Crystal Structure Of Ferredoxin-Nadp+ Oxidoreductase From
Bacillus Subtilis (Form Ii)
Length = 332
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
++GGG++AV+ AL L IAK+V++IHR +K R + ++ L + K+++ + +
Sbjct: 159 ILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRAHEHSVENL----HASKVNVLTPFVPAE 214
Query: 80 IIGNNTV 86
+IG + +
Sbjct: 215 LIGEDKI 221
>pdb|3AB1|A Chain A, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
pdb|3AB1|B Chain B, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
Length = 360
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
++GGG++A++ + L A VTL+HR + + + + G ID+ L+ V
Sbjct: 168 IVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGHGKTAHEVERARANGTIDVYLETEVAS 227
Query: 80 IIGNNTV 86
I +N V
Sbjct: 228 IEESNGV 234
>pdb|3CTY|A Chain A, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
pdb|3CTY|B Chain B, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
Length = 319
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 61/154 (39%), Gaps = 37/154 (24%)
Query: 21 IGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKI 80
IGGGN+ A+ +S K VT+I K CE + Q++ + I + V +I
Sbjct: 161 IGGGNSGAIAAISMSEYVKNVTIIEYMPKYMCENAYV----QEIKKRNIPYIMNAQVTEI 216
Query: 81 IGN----------NTVTGQ---LEMNDGYIKTKLNKKTGY-------------------T 108
+G+ + TG+ +E + +I L +T +
Sbjct: 217 VGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSGVKLDERGYIVVDSRQ 276
Query: 109 STNISGVFCRWRCTRLYFIDKQLLALGSGCMAAL 142
T++ GV+ T F + A+G GC AAL
Sbjct: 277 RTSVPGVYAAGDVTSGNFA-QIASAVGDGCKAAL 309
>pdb|3SFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Dihydroorotate
Dehydrogenase Bound With Inhibitor Dsm267
Length = 400
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 56 LIDRLMQKVNEGKIDIKLKHIVHKIIGNNTVTGQLEMNDGYIKTKLNKKTGYTSTNISGV 115
L L Q+ + D+ L+ + +I +NT T ++ND IK+ NKK G + + +
Sbjct: 261 LAPDLNQEQKKEIADVLLETNIDGMIISNTTT---QIND--IKSFENKKGGVSGAKLKDI 315
Query: 116 FCRWRCTRLYFIDKQLLALGS-GCMAALDA 144
++ C + +KQ+ + S G + LDA
Sbjct: 316 STKFICEMYNYTNKQIPIIASGGIFSGLDA 345
>pdb|3I65|A Chain A, Plasmodium Falciparum Dihydroorotate Dehydrogenase Bound
With Triazolopyrimidine-Based Inhibitor Dsm1
pdb|3I68|A Chain A, Plasmodium Falciparum Dihydroorotate Dehydrogenase Bound
With Triazolopyrimidine-Based Inhibitor Dsm2
pdb|3I6R|A Chain A, Plasmodium Falciparum Dihydroorotate Dehydrogenase Bound
With Triazolopyrimidine-Based Inhibitor Dsm74
pdb|3O8A|A Chain A, Crystal Structure Of Plasmodium Falciparum Dihydroorotate
Dehydrogenase Bound With Novel Inhibitor Genz667348
Length = 415
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 56 LIDRLMQKVNEGKIDIKLKHIVHKIIGNNTVTGQLEMNDGYIKTKLNKKTGYTSTNISGV 115
L L Q+ + D+ L+ + +I +NT T ++ND IK+ NKK G + + +
Sbjct: 276 LAPDLNQEQKKEIADVLLETNIDGMIISNTTT---QIND--IKSFENKKGGVSGAKLKDI 330
Query: 116 FCRWRCTRLYFIDKQLLALGS-GCMAALDA 144
++ C + +KQ+ + S G + LDA
Sbjct: 331 STKFICEMYNYTNKQIPIIASGGIFSGLDA 360
>pdb|1TV5|A Chain A, Plasmodium Falciparum Dihydroorotate Dehydrogenase With A
Bound Inhibitor
Length = 443
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 70 DIKLKHIVHKIIGNNTVTGQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDK 129
D+ L+ + +I +NT T ++ND IK+ NKK G + + + ++ C + +K
Sbjct: 318 DVLLETNIDGMIISNTTT---QIND--IKSFENKKGGVSGAKLKDISTKFICEMYNYTNK 372
Query: 130 QLLALGS-GCMAALDA 144
Q+ + S G + LDA
Sbjct: 373 QIPIIASGGIFSGLDA 388
>pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGC|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGE|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGE|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 29/140 (20%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIV 77
+IGGG +E A + KKV +I RN+ + + + + + ++ ++ I+I V
Sbjct: 191 IIGGGAIGLEMAETFVELGKKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEILTNENV 250
Query: 78 HKIIGNNTVTGQLEMNDGYIKTKL---------------------NKK-----TGYTSTN 111
GN V +E + G K L N K Y TN
Sbjct: 251 KAFKGNERVEA-VETDKGTYKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTN 309
Query: 112 ISGVFCRWRCTRLYFIDKQL 131
+ V+ C Y + K++
Sbjct: 310 VQDVYAAGDCATHYHVIKEI 329
>pdb|3K7T|A Chain A, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
pdb|3K7T|B Chain B, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
Length = 425
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50
V+GGG + ++ A L+N KKV L+ E+L
Sbjct: 6 VVGGGFSGLKAARDLTNAGKKVLLLEGGERL 36
>pdb|3K7M|X Chain X, Crystal Structure Of 6-Hydroxy-L-Nicotine Oxidase From
Arthrobacter Nicotinovorans
pdb|3K7Q|X Chain X, Crystal Structure Of Substrate-Bound
6-Hydroxy-L-Nicotine Oxidase From Arthrobacter
Nicotinovorans
pdb|3NG7|X Chain X, Complex Of Dithionite-Reduced 6-Hydroxy-L-Nicotine
Oxidase With Substrate Bound At Active Site And
Inhibitor At Exit Cavity
pdb|3NGC|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With
Intermediate Methylmyosmine Product Formed During
Catalytic Turnover
pdb|3NH3|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Final
Ketone Product Formed During Catalytic Turnover
pdb|3NHO|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Product
Bound At Active Site
pdb|3NK0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Inhibitor
Bound At Active Site And Turnover Product At Exit
Cavity
pdb|3NK1|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Serotonin
pdb|3NK2|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Dopamine
pdb|3NN6|X Chain X, Crystal Structure Of Inhibitor-Bound In Active Centre
6-Hydroxy-L- Nicotine Oxidase From Arthrobacter
Nicotinovorans
pdb|3NN0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With
Nicotinamide
Length = 431
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50
V+GGG + ++ A L+N KKV L+ E+L
Sbjct: 6 VVGGGFSGLKAARDLTNAGKKVLLLEGGERL 36
>pdb|1MO9|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl
Coenzyme M
pdb|1MO9|B Chain B, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl
Coenzyme M
pdb|1MOK|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|B Chain B, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|C Chain C, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|D Chain D, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|2C3D|A Chain A, 2.15 Angstrom Crystal Structure Of 2-Ketopropyl Coenzyme M
Oxidoreductase Carboxylase With A Coenzyme M Disulfide
Bound At The Active Site
pdb|2C3D|B Chain B, 2.15 Angstrom Crystal Structure Of 2-Ketopropyl Coenzyme M
Oxidoreductase Carboxylase With A Coenzyme M Disulfide
Bound At The Active Site
pdb|2C3C|A Chain A, 2.01 Angstrom X-Ray Crystal Structure Of A Mixed Disulfide
Between Coenzyme M And Nadph-Dependent Oxidoreductase 2-
Ketopropyl Coenzyme M Carboxylase
pdb|2C3C|B Chain B, 2.01 Angstrom X-Ray Crystal Structure Of A Mixed Disulfide
Between Coenzyme M And Nadph-Dependent Oxidoreductase 2-
Ketopropyl Coenzyme M Carboxylase
pdb|3Q6J|A Chain A, Structural Basis For Carbon Dioxide Binding By
2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE
pdb|3Q6J|B Chain B, Structural Basis For Carbon Dioxide Binding By
2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE
Length = 523
Score = 26.9 bits (58), Expect = 4.2, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEK------ILIDRLMQK 63
V+GG TAVE + + ++ ++ R E L+ K ++DR+ ++
Sbjct: 219 VVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQ 268
>pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT
Length = 478
Score = 26.2 bits (56), Expect = 7.3, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50
++G G AVE A LS + K +L+ R++K+
Sbjct: 192 IVGAGYIAVEMAGILSALGSKTSLMIRHDKV 222
>pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Glutathione Complex
pdb|3GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Trypanothione Complex
pdb|4GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Mixed
Disulfide Between Trypanothione And The Enzyme
pdb|5GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant,
Glutathionylspermidine Complex
Length = 461
Score = 26.2 bits (56), Expect = 7.4, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50
++G G AVE A LS + K +L+ R++K+
Sbjct: 175 IVGAGYIAVEMAGILSALGSKTSLMIRHDKV 205
>pdb|1GSN|A Chain A, Human Glutathione Reductase Modified By
Dinitrosoglutathione
Length = 478
Score = 26.2 bits (56), Expect = 7.4, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50
++G G AVE A LS + K +L+ R++K+
Sbjct: 192 IVGAGYIAVEMAGILSALGSKTSLMIRHDKV 222
>pdb|2AAQ|A Chain A, Crystal Structure Analysis Of The Human Glutahione
Reductase, Complexed With Gopi
Length = 479
Score = 26.2 bits (56), Expect = 7.4, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50
++G G AVE A LS + K +L+ R++K+
Sbjct: 193 IVGAGYIAVEMAGILSALGSKTSLMIRHDKV 223
>pdb|1GRG|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
Length = 478
Score = 26.2 bits (56), Expect = 7.4, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50
++G G AVE A LS + K +L+ R++K+
Sbjct: 192 IVGAGYIAVEMAGILSALGSKTSLMIRHDKV 222
>pdb|3DJG|X Chain X, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
Length = 477
Score = 26.2 bits (56), Expect = 7.4, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50
++G G AVE A LS + K +L+ R++K+
Sbjct: 191 IVGAGYIAVEMAGILSALGSKTSLMIRHDKV 221
>pdb|1K4Q|A Chain A, Human Glutathione Reductase Inactivated By Peroxynitrite
Length = 463
Score = 26.2 bits (56), Expect = 7.4, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50
++G G AVE A LS + K +L+ R++K+
Sbjct: 177 IVGAGYIAVEMAGILSALGSKTSLMIRHDKV 207
>pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Ajoene Inhibitor And Subversive Substrate
pdb|2GH5|A Chain A, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|2GH5|B Chain B, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|1GRA|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRB|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRE|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRF|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|3GRS|A Chain A, Refined Structure Of Glutathione Reductase At 1.54
Angstroms Resolution
pdb|4GR1|A Chain A, The Binding Of The Retro-analogue Of Glutathione Disulfide
To Glutathione Reductase
pdb|3DJJ|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK4|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK8|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK9|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|1GRH|A Chain A, Inhibition Of Human Glutathione Reductase By The
Nitrosourea Drugs 1, 3-Bis(2-Chloroethyl)-1-Nitrosourea
And 1-(2-Chloroethyl)-3-(2- Hydroxyethyl)-1-Nitrosourea
pdb|3SQP|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
pdb|3SQP|B Chain B, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
Length = 478
Score = 26.2 bits (56), Expect = 7.4, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50
++G G AVE A LS + K +L+ R++K+
Sbjct: 192 IVGAGYIAVEMAGILSALGSKTSLMIRHDKV 222
>pdb|1DNC|A Chain A, Human Glutathione Reductase Modified By
Diglutathione-Dinitroso-Iron
Length = 478
Score = 26.2 bits (56), Expect = 7.4, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50
++G G AVE A LS + K +L+ R++K+
Sbjct: 192 IVGAGYIAVEMAGILSALGSKTSLMIRHDKV 222
>pdb|1XAN|A Chain A, Human Glutathione Reductase In Complex With A Xanthene
Inhibitor
Length = 461
Score = 26.2 bits (56), Expect = 7.4, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50
++G G AVE A LS + K +L+ R++K+
Sbjct: 175 IVGAGYIAVEMAGILSALGSKTSLMIRHDKV 205
>pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGB|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 51/140 (36%), Gaps = 29/140 (20%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIV 77
+IGGG +E A + KKV I RN+ + + + + ++ ++ I+I V
Sbjct: 191 IIGGGAIGLEXAETFVELGKKVRXIERNDHIGTIYDGDXAEYIYKEADKHHIEILTNENV 250
Query: 78 HKIIGNNTVTGQLEMNDGYIKTKL---------------------NKK-----TGYTSTN 111
GN V +E + G K L N K Y TN
Sbjct: 251 KAFKGNERVEA-VETDKGTYKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYXQTN 309
Query: 112 ISGVFCRWRCTRLYFIDKQL 131
+ V+ C Y + K++
Sbjct: 310 VQDVYAAGDCATHYHVIKEI 329
>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 25.8 bits (55), Expect = 8.2, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLI---HRNEKLRCEKILIDRLMQKVNEGKIDIKLKHI 76
VIG G +E A + KKVT+I R + +K D L +++ I I
Sbjct: 154 VIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGET 213
Query: 77 VHKIIGNNTVTGQLEMNDGY 96
V + G+ V + + Y
Sbjct: 214 VERYEGDGRVQKVVTDKNAY 233
>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m
Length = 447
Score = 25.8 bits (55), Expect = 8.4, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLI---HRNEKLRCEKILIDRLMQKVNEGKIDIKLKHI 76
VIG G +E A + KKVT+I R + +K D L +++ I I
Sbjct: 154 VIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGET 213
Query: 77 VHKIIGNNTVTGQLEMNDGY 96
V + G+ V + + Y
Sbjct: 214 VERYEGDGRVQKVVTDKNAY 233
>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid
pdb|1NPX|A Chain A, Structure Of Nadh Peroxidase From Streptococcus Faecalis
10c1 Refined At 2.16 Angstroms Resolution
pdb|2NPX|A Chain A, Nadh Binding Site And Catalysis Of Nadh Peroxidase
Length = 447
Score = 25.8 bits (55), Expect = 8.4, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLI---HRNEKLRCEKILIDRLMQKVNEGKIDIKLKHI 76
VIG G +E A + KKVT+I R + +K D L +++ I I
Sbjct: 154 VIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGET 213
Query: 77 VHKIIGNNTVTGQLEMNDGY 96
V + G+ V + + Y
Sbjct: 214 VERYEGDGRVQKVVTDKNAY 233
>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 25.8 bits (55), Expect = 8.4, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLI---HRNEKLRCEKILIDRLMQKVNEGKIDIKLKHI 76
VIG G +E A + KKVT+I R + +K D L +++ I I
Sbjct: 154 VIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGET 213
Query: 77 VHKIIGNNTVTGQLEMNDGY 96
V + G+ V + + Y
Sbjct: 214 VERYEGDGRVQKVVTDKNAY 233
>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 25.8 bits (55), Expect = 8.4, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLI---HRNEKLRCEKILIDRLMQKVNEGKIDIKLKHI 76
VIG G +E A + KKVT+I R + +K D L +++ I I
Sbjct: 154 VIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGET 213
Query: 77 VHKIIGNNTVTGQLEMNDGY 96
V + G+ V + + Y
Sbjct: 214 VERYEGDGRVQKVVTDKNAY 233
>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 25.8 bits (55), Expect = 8.4, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLI---HRNEKLRCEKILIDRLMQKVNEGKIDIKLKHI 76
VIG G +E A + KKVT+I R + +K D L +++ I I
Sbjct: 154 VIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGET 213
Query: 77 VHKIIGNNTVTGQLEMNDGY 96
V + G+ V + + Y
Sbjct: 214 VERYEGDGRVQKVVTDKNAY 233
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,160,222
Number of Sequences: 62578
Number of extensions: 155575
Number of successful extensions: 481
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 415
Number of HSP's gapped (non-prelim): 75
length of query: 148
length of database: 14,973,337
effective HSP length: 90
effective length of query: 58
effective length of database: 9,341,317
effective search space: 541796386
effective search space used: 541796386
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)