Query psy5231
Match_columns 148
No_of_seqs 189 out of 1346
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 21:02:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5231.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5231hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0492 TrxB Thioredoxin reduc 99.9 3.4E-26 7.4E-31 174.4 11.2 132 3-148 136-300 (305)
2 KOG0404|consensus 99.9 4.8E-25 1E-29 158.9 9.4 133 4-148 148-318 (322)
3 PRK10262 thioredoxin reductase 99.9 6.8E-24 1.5E-28 162.8 11.6 141 3-148 138-314 (321)
4 COG3634 AhpF Alkyl hydroperoxi 99.9 4.6E-24 1E-28 162.2 6.3 132 4-148 347-514 (520)
5 COG1249 Lpd Pyruvate/2-oxoglut 99.9 1.3E-22 2.7E-27 161.8 14.8 126 13-145 171-333 (454)
6 TIGR01421 gluta_reduc_1 glutat 99.9 9.5E-21 2.1E-25 151.7 15.5 125 14-145 165-326 (450)
7 PRK15317 alkyl hydroperoxide r 99.9 3E-21 6.4E-26 156.9 11.9 132 4-148 344-511 (517)
8 TIGR03140 AhpF alkyl hydropero 99.9 2.2E-21 4.8E-26 157.6 10.7 130 5-148 346-512 (515)
9 PLN02507 glutathione reductase 99.9 1.4E-20 2.9E-25 152.5 15.1 124 15-145 203-361 (499)
10 TIGR01423 trypano_reduc trypan 99.9 1.4E-20 3E-25 151.9 14.9 125 14-145 186-349 (486)
11 PRK05249 soluble pyridine nucl 99.9 1.8E-20 3.8E-25 150.3 14.8 124 15-145 175-333 (461)
12 TIGR01424 gluta_reduc_2 glutat 99.8 4E-20 8.7E-25 147.8 15.8 124 15-145 166-324 (446)
13 TIGR03143 AhpF_homolog putativ 99.8 1.5E-20 3.3E-25 153.9 13.6 132 4-148 136-308 (555)
14 TIGR01292 TRX_reduct thioredox 99.8 2.8E-20 6E-25 140.5 14.0 130 5-148 135-300 (300)
15 PRK14727 putative mercuric red 99.8 3.3E-20 7.1E-25 149.6 15.1 125 14-145 187-344 (479)
16 TIGR02053 MerA mercuric reduct 99.8 3.7E-20 8.1E-25 148.5 15.2 125 15-146 166-328 (463)
17 PRK07845 flavoprotein disulfid 99.8 3.6E-20 7.9E-25 148.8 15.0 126 13-145 175-335 (466)
18 PRK13748 putative mercuric red 99.8 3.2E-20 7E-25 151.9 14.9 124 15-145 270-426 (561)
19 PRK07818 dihydrolipoamide dehy 99.8 3.9E-20 8.5E-25 148.6 15.1 125 14-145 171-334 (466)
20 PRK06116 glutathione reductase 99.8 4.7E-20 1E-24 147.5 15.2 125 14-145 166-326 (450)
21 PRK06467 dihydrolipoamide dehy 99.8 5.6E-20 1.2E-24 148.0 14.6 125 13-145 172-335 (471)
22 PRK06370 mercuric reductase; V 99.8 7.9E-20 1.7E-24 146.7 15.4 126 13-145 169-332 (463)
23 PRK08010 pyridine nucleotide-d 99.8 8.4E-20 1.8E-24 145.7 15.3 124 15-145 158-315 (441)
24 PRK06416 dihydrolipoamide dehy 99.8 8.5E-20 1.8E-24 146.4 15.2 125 15-146 172-333 (462)
25 PRK06115 dihydrolipoamide dehy 99.8 9.9E-20 2.2E-24 146.3 15.2 125 14-145 173-336 (466)
26 PRK14694 putative mercuric red 99.8 1.1E-19 2.5E-24 146.0 15.1 124 15-145 178-333 (468)
27 TIGR01316 gltA glutamate synth 99.8 1.1E-19 2.4E-24 145.5 14.9 124 10-148 271-449 (449)
28 PTZ00058 glutathione reductase 99.8 1.3E-19 2.7E-24 148.3 15.2 126 15-145 237-430 (561)
29 PLN02546 glutathione reductase 99.8 9.6E-20 2.1E-24 149.0 14.5 123 16-145 253-411 (558)
30 PRK06912 acoL dihydrolipoamide 99.8 1.4E-19 3.1E-24 145.1 14.9 125 14-145 169-328 (458)
31 PRK06292 dihydrolipoamide dehy 99.8 1.3E-19 2.9E-24 145.1 14.5 124 15-146 169-330 (460)
32 PRK12831 putative oxidoreducta 99.8 1.8E-19 3.9E-24 144.8 14.7 126 9-148 279-460 (464)
33 PRK06327 dihydrolipoamide dehy 99.8 2.7E-19 5.9E-24 144.1 15.1 124 15-145 183-345 (475)
34 PRK13512 coenzyme A disulfide 99.8 1.7E-19 3.7E-24 143.9 13.3 126 15-145 148-310 (438)
35 TIGR01438 TGR thioredoxin and 99.8 4.8E-19 1E-23 143.0 15.0 125 15-145 180-342 (484)
36 TIGR03452 mycothione_red mycot 99.8 4.7E-19 1E-23 142.0 14.8 123 15-145 169-326 (452)
37 PRK07846 mycothione reductase; 99.8 6.2E-19 1.3E-23 141.3 15.1 123 15-145 166-323 (451)
38 PTZ00318 NADH dehydrogenase-li 99.8 5.6E-19 1.2E-23 140.5 14.1 127 17-148 175-347 (424)
39 PRK05976 dihydrolipoamide dehy 99.8 1.1E-18 2.4E-23 140.4 15.6 125 14-145 179-341 (472)
40 PRK07251 pyridine nucleotide-d 99.8 1.2E-18 2.5E-23 139.1 15.2 124 15-145 157-314 (438)
41 PRK04965 NADH:flavorubredoxin 99.8 1.2E-18 2.6E-23 136.5 14.3 129 8-146 138-301 (377)
42 PRK09564 coenzyme A disulfide 99.8 8.8E-19 1.9E-23 139.8 13.6 124 17-145 151-315 (444)
43 TIGR01350 lipoamide_DH dihydro 99.8 1.8E-18 3.9E-23 138.6 14.9 125 15-146 170-331 (461)
44 PRK09754 phenylpropionate diox 99.8 2E-18 4.3E-23 136.2 13.6 126 10-145 143-307 (396)
45 COG1252 Ndh NADH dehydrogenase 99.8 2E-18 4.3E-23 135.5 12.5 128 17-148 157-331 (405)
46 TIGR03385 CoA_CoA_reduc CoA-di 99.8 3.1E-18 6.6E-23 136.2 13.4 127 10-145 136-302 (427)
47 PRK11749 dihydropyrimidine deh 99.8 4.3E-18 9.4E-23 136.5 14.3 125 10-148 272-451 (457)
48 PRK12770 putative glutamate sy 99.8 3.6E-18 7.8E-23 132.8 13.1 126 10-148 171-349 (352)
49 PRK12779 putative bifunctional 99.8 4.9E-18 1.1E-22 145.7 15.0 125 10-148 446-626 (944)
50 PTZ00153 lipoamide dehydrogena 99.8 7.5E-18 1.6E-22 139.9 15.3 124 15-145 312-493 (659)
51 PRK14989 nitrite reductase sub 99.8 4.5E-18 9.6E-23 144.7 14.2 127 10-145 144-308 (847)
52 PTZ00052 thioredoxin reductase 99.8 8.6E-18 1.9E-22 136.2 14.9 124 15-145 182-339 (499)
53 PRK12778 putative bifunctional 99.8 6.6E-18 1.4E-22 142.6 14.6 125 9-148 568-749 (752)
54 PRK12814 putative NADPH-depend 99.8 1.5E-17 3.3E-22 138.5 13.9 126 9-148 321-500 (652)
55 KOG0405|consensus 99.8 3.9E-18 8.4E-23 130.0 8.8 127 13-146 187-349 (478)
56 PRK12769 putative oxidoreducta 99.8 2.4E-17 5.2E-22 137.4 14.3 129 9-148 466-651 (654)
57 TIGR01318 gltD_gamma_fam gluta 99.7 1.1E-16 2.3E-21 128.9 14.4 124 10-148 281-465 (467)
58 PRK12775 putative trifunctiona 99.7 6.9E-17 1.5E-21 139.6 14.1 131 8-148 568-754 (1006)
59 TIGR02374 nitri_red_nirB nitri 99.7 7.3E-17 1.6E-21 136.7 13.4 126 10-145 139-299 (785)
60 PRK13984 putative oxidoreducta 99.7 1.8E-16 3.8E-21 131.1 13.8 121 16-148 419-601 (604)
61 TIGR03169 Nterm_to_SelD pyridi 99.7 1.8E-16 3.8E-21 123.6 13.0 126 17-148 147-310 (364)
62 PRK12810 gltD glutamate syntha 99.7 1.5E-16 3.1E-21 128.2 12.9 129 9-148 279-464 (471)
63 KOG1335|consensus 99.7 6.7E-17 1.5E-21 124.5 7.7 126 12-144 208-374 (506)
64 PRK12809 putative oxidoreducta 99.7 7.1E-16 1.5E-20 128.3 13.8 128 10-148 450-634 (639)
65 PRK09853 putative selenate red 99.7 8.2E-16 1.8E-20 131.7 14.2 123 10-147 667-840 (1019)
66 KOG1336|consensus 99.6 1.7E-15 3.7E-20 119.3 11.5 122 18-144 216-380 (478)
67 TIGR03315 Se_ygfK putative sel 99.6 4.9E-15 1.1E-19 127.2 14.1 124 9-146 664-837 (1012)
68 PRK12771 putative glutamate sy 99.6 1.1E-14 2.4E-19 119.7 14.1 125 10-148 266-443 (564)
69 TIGR01317 GOGAT_sm_gam glutama 99.6 1.1E-14 2.3E-19 117.8 13.1 47 95-148 431-478 (485)
70 KOG4716|consensus 99.6 1.7E-15 3.7E-20 115.4 7.2 121 19-145 202-363 (503)
71 KOG2495|consensus 99.6 1.3E-14 2.8E-19 113.2 9.0 127 17-147 220-395 (491)
72 PF00070 Pyr_redox: Pyridine n 99.6 4.6E-14 1E-18 87.6 9.3 68 17-84 1-70 (80)
73 COG0446 HcaD Uncharacterized N 99.5 1.6E-12 3.4E-17 101.9 13.0 125 16-145 137-308 (415)
74 TIGR01372 soxA sarcosine oxida 99.4 3.2E-12 6.8E-17 111.0 13.6 126 10-148 316-471 (985)
75 COG1251 NirB NAD(P)H-nitrite r 99.4 6.5E-13 1.4E-17 109.5 8.2 121 19-145 149-304 (793)
76 KOG0399|consensus 99.4 7.7E-13 1.7E-17 112.8 7.1 71 3-77 1770-1858(2142)
77 PLN02852 ferredoxin-NADP+ redu 99.3 3E-11 6.6E-16 97.7 12.0 48 95-148 374-421 (491)
78 PF07992 Pyr_redox_2: Pyridine 99.3 1.2E-11 2.5E-16 88.5 6.3 32 17-48 1-32 (201)
79 COG0493 GltD NADPH-dependent g 99.2 7.4E-11 1.6E-15 94.7 8.3 127 10-147 261-449 (457)
80 PRK05329 anaerobic glycerol-3- 99.0 3.2E-09 6.9E-14 84.7 10.1 127 19-147 219-419 (422)
81 COG1148 HdrA Heterodisulfide r 98.9 1.5E-08 3.3E-13 80.9 10.9 67 14-83 123-207 (622)
82 PF01134 GIDA: Glucose inhibit 98.7 2E-07 4.4E-12 73.5 11.4 39 107-148 349-388 (392)
83 KOG1346|consensus 98.5 7.4E-08 1.6E-12 76.0 3.7 124 16-145 348-517 (659)
84 PRK06567 putative bifunctional 98.5 1.2E-06 2.6E-11 75.8 10.3 31 117-148 739-769 (1028)
85 TIGR01292 TRX_reduct thioredox 98.5 1.1E-06 2.5E-11 66.2 9.0 66 17-83 2-85 (300)
86 PRK12779 putative bifunctional 98.4 1.1E-06 2.4E-11 76.4 7.9 65 9-77 304-379 (944)
87 PF03486 HI0933_like: HI0933-l 98.3 4.2E-06 9.2E-11 66.7 8.6 33 17-49 2-34 (409)
88 TIGR01318 gltD_gamma_fam gluta 98.3 3.8E-06 8.3E-11 68.0 8.4 62 17-78 143-215 (467)
89 PRK11749 dihydropyrimidine deh 98.3 4.6E-06 1E-10 67.3 8.3 63 15-77 140-213 (457)
90 PRK12775 putative trifunctiona 98.3 3.5E-06 7.5E-11 73.9 7.7 61 17-77 432-503 (1006)
91 TIGR01316 gltA glutamate synth 98.2 4.4E-06 9.6E-11 67.3 7.8 62 16-77 134-206 (449)
92 PRK12810 gltD glutamate syntha 98.2 5.6E-06 1.2E-10 67.1 8.4 63 16-78 144-217 (471)
93 PRK12809 putative oxidoreducta 98.2 4.5E-06 9.7E-11 70.1 7.8 62 16-77 311-383 (639)
94 COG0493 GltD NADPH-dependent g 98.2 3.5E-06 7.7E-11 68.0 6.9 67 12-78 120-197 (457)
95 TIGR01317 GOGAT_sm_gam glutama 98.2 6.6E-06 1.4E-10 66.9 8.4 62 17-78 145-217 (485)
96 PRK12831 putative oxidoreducta 98.2 5.9E-06 1.3E-10 66.9 7.8 62 16-77 141-214 (464)
97 COG2081 Predicted flavoprotein 98.2 1E-05 2.2E-10 63.6 8.6 68 17-84 5-141 (408)
98 PRK12769 putative oxidoreducta 98.2 7E-06 1.5E-10 69.1 8.4 62 16-77 328-400 (654)
99 PRK09853 putative selenate red 98.2 8.5E-06 1.8E-10 71.1 8.3 64 10-77 538-612 (1019)
100 PRK09564 coenzyme A disulfide 98.2 8.3E-06 1.8E-10 65.3 7.5 68 17-84 2-86 (444)
101 TIGR02032 GG-red-SF geranylger 98.2 2.1E-05 4.5E-10 59.0 9.3 32 17-48 2-33 (295)
102 TIGR03140 AhpF alkyl hydropero 98.1 1.7E-05 3.7E-10 65.0 9.3 68 16-83 213-296 (515)
103 PF13450 NAD_binding_8: NAD(P) 98.1 5.3E-06 1.2E-10 49.7 4.8 33 20-52 1-33 (68)
104 PRK12770 putative glutamate sy 98.1 1.6E-05 3.5E-10 62.0 8.5 65 16-80 19-94 (352)
105 PRK15317 alkyl hydroperoxide r 98.1 2.1E-05 4.6E-10 64.4 9.5 67 17-83 213-295 (517)
106 PRK04176 ribulose-1,5-biphosph 98.1 2.3E-05 5E-10 58.8 8.9 64 18-81 28-131 (257)
107 COG0029 NadB Aspartate oxidase 98.1 4.3E-05 9.3E-10 61.6 10.6 47 95-146 342-395 (518)
108 PRK12778 putative bifunctional 98.1 1.5E-05 3.2E-10 68.1 8.5 62 16-77 432-504 (752)
109 PRK12814 putative NADPH-depend 98.1 1.3E-05 2.9E-10 67.4 7.9 62 16-77 194-266 (652)
110 PLN02172 flavin-containing mon 98.1 2.6E-05 5.7E-10 63.2 9.0 32 17-48 12-43 (461)
111 TIGR00292 thiazole biosynthesi 98.1 3.9E-05 8.5E-10 57.5 9.2 65 17-81 23-127 (254)
112 PF13738 Pyr_redox_3: Pyridine 98.0 7.2E-06 1.6E-10 58.6 4.6 34 15-48 167-200 (203)
113 PLN02852 ferredoxin-NADP+ redu 98.0 2.7E-05 5.9E-10 63.5 8.2 61 17-77 28-102 (491)
114 PRK01438 murD UDP-N-acetylmura 98.0 2.6E-05 5.6E-10 63.3 7.3 64 6-78 11-74 (480)
115 TIGR03315 Se_ygfK putative sel 98.0 2.7E-05 5.9E-10 68.1 7.7 59 17-75 539-608 (1012)
116 PRK12771 putative glutamate sy 97.9 5.1E-05 1.1E-09 62.8 8.4 64 10-77 136-210 (564)
117 PRK05335 tRNA (uracil-5-)-meth 97.9 1.4E-05 3.1E-10 63.9 4.9 31 17-47 4-34 (436)
118 PLN02172 flavin-containing mon 97.9 1.1E-05 2.3E-10 65.4 4.1 45 2-50 195-239 (461)
119 PF13738 Pyr_redox_3: Pyridine 97.9 9.8E-05 2.1E-09 52.7 7.9 66 19-84 1-112 (203)
120 PF01494 FAD_binding_3: FAD bi 97.9 2.7E-05 5.9E-10 59.6 5.3 34 17-50 3-36 (356)
121 PF01946 Thi4: Thi4 family; PD 97.8 0.00013 2.8E-09 53.3 8.1 32 18-49 20-51 (230)
122 TIGR03143 AhpF_homolog putativ 97.8 0.00014 3E-09 60.2 9.2 64 17-82 6-87 (555)
123 TIGR00137 gid_trmFO tRNA:m(5)U 97.8 2.5E-05 5.5E-10 62.6 4.7 33 17-49 2-34 (433)
124 PRK13984 putative oxidoreducta 97.8 0.0001 2.2E-09 61.6 8.4 64 10-77 282-356 (604)
125 PRK11883 protoporphyrinogen ox 97.8 3.7E-05 8E-10 61.4 5.1 35 17-51 2-38 (451)
126 COG2072 TrkA Predicted flavopr 97.8 2.8E-05 6E-10 62.7 4.2 44 2-49 166-209 (443)
127 KOG0029|consensus 97.8 4E-05 8.7E-10 62.6 4.9 36 17-52 17-52 (501)
128 PF00743 FMO-like: Flavin-bind 97.8 3.6E-05 7.7E-10 63.4 4.7 44 2-49 174-217 (531)
129 PTZ00188 adrenodoxin reductase 97.8 0.00014 3.1E-09 59.2 8.0 62 16-77 40-114 (506)
130 PRK07233 hypothetical protein; 97.8 4.7E-05 1E-09 60.3 5.2 35 17-51 1-35 (434)
131 TIGR01424 gluta_reduc_2 glutat 97.7 0.00018 4E-09 57.9 8.4 31 17-47 4-34 (446)
132 PRK06475 salicylate hydroxylas 97.7 6E-05 1.3E-09 59.7 5.3 34 17-50 4-37 (400)
133 PF01266 DAO: FAD dependent ox 97.7 7.5E-05 1.6E-09 57.2 5.4 31 17-47 1-31 (358)
134 PRK09126 hypothetical protein; 97.7 0.00012 2.5E-09 57.6 6.6 32 18-49 6-37 (392)
135 COG1635 THI4 Ribulose 1,5-bisp 97.7 6.4E-05 1.4E-09 55.1 4.5 33 18-50 33-65 (262)
136 PRK13800 putative oxidoreducta 97.7 5.2E-05 1.1E-09 66.0 4.8 47 95-147 362-408 (897)
137 TIGR01372 soxA sarcosine oxida 97.7 0.00026 5.6E-09 62.3 9.1 67 16-82 164-244 (985)
138 PRK09754 phenylpropionate diox 97.7 0.00016 3.5E-09 57.3 7.1 67 18-84 6-88 (396)
139 PRK05868 hypothetical protein; 97.7 6.8E-05 1.5E-09 59.0 4.9 35 16-50 2-36 (372)
140 COG3349 Uncharacterized conser 97.7 6.7E-05 1.5E-09 60.7 4.8 36 17-52 2-37 (485)
141 PLN02268 probable polyamine ox 97.7 7.9E-05 1.7E-09 59.6 5.2 36 17-52 2-37 (435)
142 PRK06847 hypothetical protein; 97.7 7.6E-05 1.7E-09 58.3 5.0 33 17-49 6-38 (375)
143 PRK13512 coenzyme A disulfide 97.7 0.00017 3.7E-09 57.9 7.1 69 16-84 2-88 (438)
144 PRK07236 hypothetical protein; 97.7 7.8E-05 1.7E-09 58.7 5.0 33 17-49 8-40 (386)
145 PRK06753 hypothetical protein; 97.7 7.7E-05 1.7E-09 58.2 4.9 33 17-49 2-34 (373)
146 KOG3851|consensus 97.7 0.00061 1.3E-08 52.7 9.5 103 19-125 196-337 (446)
147 PRK08244 hypothetical protein; 97.6 9.8E-05 2.1E-09 60.1 5.6 34 17-50 4-37 (493)
148 PRK06184 hypothetical protein; 97.6 0.0001 2.2E-09 60.2 5.6 33 18-50 6-38 (502)
149 PRK08275 putative oxidoreducta 97.6 8.1E-05 1.8E-09 61.6 5.1 47 95-147 357-403 (554)
150 PRK10262 thioredoxin reductase 97.6 0.00049 1.1E-08 52.9 9.1 65 16-81 7-89 (321)
151 PTZ00318 NADH dehydrogenase-li 97.6 0.00032 6.9E-09 56.2 8.3 67 17-84 12-91 (424)
152 PRK07364 2-octaprenyl-6-methox 97.6 8.7E-05 1.9E-09 58.8 5.0 34 16-49 19-52 (415)
153 PRK07045 putative monooxygenas 97.6 9.1E-05 2E-09 58.3 5.0 34 17-50 7-40 (388)
154 PRK08163 salicylate hydroxylas 97.6 9.8E-05 2.1E-09 58.1 5.1 33 17-49 6-38 (396)
155 PRK12409 D-amino acid dehydrog 97.6 0.0001 2.2E-09 58.5 4.9 32 17-48 3-34 (410)
156 PRK05249 soluble pyridine nucl 97.6 0.00011 2.4E-09 59.3 5.0 34 17-50 7-40 (461)
157 PRK06126 hypothetical protein; 97.6 0.00011 2.4E-09 60.5 5.1 34 17-50 9-42 (545)
158 TIGR00562 proto_IX_ox protopor 97.6 0.00012 2.5E-09 58.9 5.1 35 17-51 4-42 (462)
159 COG1233 Phytoene dehydrogenase 97.6 0.00012 2.6E-09 59.6 5.1 34 17-50 5-38 (487)
160 PRK11259 solA N-methyltryptoph 97.6 0.00011 2.5E-09 57.2 4.8 32 17-48 5-36 (376)
161 PRK07588 hypothetical protein; 97.6 0.00012 2.6E-09 57.6 4.9 34 17-50 2-35 (391)
162 TIGR02733 desat_CrtD C-3',4' d 97.6 0.00013 2.9E-09 59.3 5.2 36 16-51 2-37 (492)
163 PRK06854 adenylylsulfate reduc 97.6 0.00012 2.7E-09 61.2 5.1 41 108-148 391-431 (608)
164 TIGR01988 Ubi-OHases Ubiquinon 97.6 0.00013 2.8E-09 57.0 4.9 32 18-49 2-33 (385)
165 TIGR01377 soxA_mon sarcosine o 97.6 0.00012 2.6E-09 57.2 4.7 32 17-48 2-33 (380)
166 PRK05714 2-octaprenyl-3-methyl 97.6 0.00021 4.5E-09 56.6 6.1 32 17-48 4-35 (405)
167 TIGR01984 UbiH 2-polyprenyl-6- 97.5 0.00013 2.8E-09 57.1 4.8 32 17-48 1-33 (382)
168 PRK08013 oxidoreductase; Provi 97.5 0.00015 3.3E-09 57.4 4.9 33 17-49 5-37 (400)
169 PRK07494 2-octaprenyl-6-methox 97.5 0.00015 3.2E-09 57.0 4.8 33 17-49 9-41 (388)
170 PRK07608 ubiquinone biosynthes 97.5 0.00017 3.6E-09 56.6 5.0 32 18-49 8-39 (388)
171 KOG1399|consensus 97.5 0.00015 3.2E-09 58.6 4.6 35 16-50 7-41 (448)
172 PRK10157 putative oxidoreducta 97.5 0.00018 3.9E-09 57.7 5.1 32 17-48 7-38 (428)
173 PF00743 FMO-like: Flavin-bind 97.5 0.00018 3.8E-09 59.4 5.2 67 16-82 2-114 (531)
174 TIGR02028 ChlP geranylgeranyl 97.5 0.00017 3.6E-09 57.3 4.9 32 17-48 2-33 (398)
175 PRK08773 2-octaprenyl-3-methyl 97.5 0.00015 3.3E-09 57.1 4.7 32 17-48 8-39 (392)
176 TIGR02734 crtI_fam phytoene de 97.5 0.00015 3.2E-09 59.1 4.6 34 18-51 1-34 (502)
177 COG0654 UbiH 2-polyprenyl-6-me 97.5 0.00014 3.1E-09 57.4 4.3 31 17-47 4-34 (387)
178 COG0644 FixC Dehydrogenases (f 97.5 0.00021 4.5E-09 56.7 5.2 33 17-49 5-37 (396)
179 COG0492 TrxB Thioredoxin reduc 97.5 0.001 2.2E-08 51.2 8.8 67 17-84 5-90 (305)
180 PRK07251 pyridine nucleotide-d 97.5 0.00018 3.9E-09 57.7 4.8 32 17-48 5-36 (438)
181 PRK06115 dihydrolipoamide dehy 97.5 0.00019 4.1E-09 58.1 4.8 34 17-50 5-38 (466)
182 PRK12416 protoporphyrinogen ox 97.5 0.0002 4.4E-09 57.7 4.9 36 16-51 2-43 (463)
183 PF12831 FAD_oxidored: FAD dep 97.4 0.00021 4.5E-09 57.4 4.9 34 17-50 1-34 (428)
184 PRK07538 hypothetical protein; 97.4 0.00021 4.7E-09 56.8 4.9 33 17-49 2-34 (413)
185 TIGR02731 phytoene_desat phyto 97.4 0.00022 4.7E-09 57.4 5.0 34 18-51 2-35 (453)
186 PLN02576 protoporphyrinogen ox 97.4 0.00021 4.6E-09 58.0 5.0 34 18-51 15-49 (496)
187 PRK08849 2-octaprenyl-3-methyl 97.4 0.00019 4.2E-09 56.5 4.5 32 17-48 5-36 (384)
188 TIGR02360 pbenz_hydroxyl 4-hyd 97.4 0.00022 4.7E-09 56.5 4.8 33 17-49 4-36 (390)
189 PRK04965 NADH:flavorubredoxin 97.4 0.00094 2E-08 52.5 8.4 68 17-84 4-88 (377)
190 PRK00711 D-amino acid dehydrog 97.4 0.00023 5E-09 56.4 5.0 32 17-48 2-33 (416)
191 PRK10015 oxidoreductase; Provi 97.4 0.00024 5.2E-09 57.0 5.1 32 17-48 7-38 (429)
192 PRK07208 hypothetical protein; 97.4 0.00024 5.2E-09 57.5 5.1 35 17-51 6-40 (479)
193 TIGR03364 HpnW_proposed FAD de 97.4 0.00024 5.1E-09 55.4 4.8 32 17-48 2-33 (365)
194 PRK11728 hydroxyglutarate oxid 97.4 0.00023 5E-09 56.2 4.8 32 17-48 4-37 (393)
195 TIGR03219 salicylate_mono sali 97.4 0.00025 5.5E-09 56.3 4.9 34 17-50 2-36 (414)
196 PRK12266 glpD glycerol-3-phosp 97.4 0.00023 4.9E-09 58.4 4.7 32 17-48 8-39 (508)
197 PRK06185 hypothetical protein; 97.4 0.00025 5.3E-09 56.1 4.8 32 17-48 8-39 (407)
198 TIGR02023 BchP-ChlP geranylger 97.4 0.00024 5.1E-09 56.1 4.7 31 17-47 2-32 (388)
199 PRK06567 putative bifunctional 97.4 0.00018 4E-09 62.7 4.3 32 16-47 384-415 (1028)
200 PLN00093 geranylgeranyl diphos 97.4 0.00026 5.6E-09 57.2 4.9 32 17-48 41-72 (450)
201 TIGR03169 Nterm_to_SelD pyridi 97.4 0.00075 1.6E-08 52.7 7.3 67 17-84 1-83 (364)
202 PRK08132 FAD-dependent oxidore 97.4 0.00026 5.6E-09 58.4 4.8 34 17-50 25-58 (547)
203 PRK08020 ubiF 2-octaprenyl-3-m 97.4 0.00025 5.4E-09 55.8 4.5 32 17-48 7-38 (391)
204 PRK06467 dihydrolipoamide dehy 97.4 0.0003 6.5E-09 57.1 5.0 34 17-50 6-39 (471)
205 PRK08243 4-hydroxybenzoate 3-m 97.4 0.00029 6.3E-09 55.6 4.8 32 17-48 4-35 (392)
206 PRK11101 glpA sn-glycerol-3-ph 97.4 0.00027 5.9E-09 58.4 4.7 32 17-48 8-39 (546)
207 PRK11445 putative oxidoreducta 97.4 0.00034 7.3E-09 54.6 5.1 32 17-49 3-34 (351)
208 PRK06617 2-octaprenyl-6-methox 97.4 0.00025 5.4E-09 55.7 4.4 31 17-47 3-33 (374)
209 TIGR01350 lipoamide_DH dihydro 97.4 0.00033 7.1E-09 56.5 5.0 33 17-50 3-35 (461)
210 KOG2614|consensus 97.3 0.00036 7.9E-09 55.2 5.0 36 17-52 4-39 (420)
211 TIGR00031 UDP-GALP_mutase UDP- 97.3 0.0004 8.6E-09 55.0 5.1 36 17-52 3-38 (377)
212 COG0665 DadA Glycine/D-amino a 97.3 0.00035 7.6E-09 54.6 4.8 32 17-48 6-37 (387)
213 PRK08010 pyridine nucleotide-d 97.3 0.00031 6.7E-09 56.4 4.5 32 17-48 5-36 (441)
214 TIGR01790 carotene-cycl lycope 97.3 0.00038 8.2E-09 54.7 4.9 32 17-48 1-32 (388)
215 PRK06416 dihydrolipoamide dehy 97.3 0.00035 7.6E-09 56.4 4.8 32 17-48 6-37 (462)
216 PRK13369 glycerol-3-phosphate 97.3 0.00034 7.3E-09 57.2 4.7 32 17-48 8-39 (502)
217 TIGR02730 carot_isom carotene 97.3 0.0004 8.7E-09 56.6 5.1 34 17-50 2-35 (493)
218 PRK14989 nitrite reductase sub 97.3 0.00094 2E-08 58.0 7.5 68 17-84 5-89 (847)
219 PRK08850 2-octaprenyl-6-methox 97.3 0.0003 6.5E-09 55.8 4.2 31 17-47 6-36 (405)
220 PRK05192 tRNA uridine 5-carbox 97.3 0.00033 7.1E-09 58.5 4.5 31 17-47 6-36 (618)
221 PRK05976 dihydrolipoamide dehy 97.3 0.00042 9E-09 56.2 5.0 31 17-47 6-36 (472)
222 PRK06116 glutathione reductase 97.3 0.00038 8.3E-09 56.0 4.6 31 17-47 6-36 (450)
223 PRK06834 hypothetical protein; 97.3 0.00041 9E-09 56.6 4.8 32 17-48 5-36 (488)
224 COG1232 HemY Protoporphyrinoge 97.3 0.00044 9.6E-09 55.7 4.8 34 17-50 2-37 (444)
225 PLN02464 glycerol-3-phosphate 97.3 0.00042 9E-09 58.3 4.7 32 17-48 73-104 (627)
226 PRK07333 2-octaprenyl-6-methox 97.2 0.00045 9.8E-09 54.5 4.6 32 17-48 3-36 (403)
227 PRK06370 mercuric reductase; V 97.2 0.00048 1E-08 55.7 4.8 31 17-47 7-37 (463)
228 TIGR02374 nitri_red_nirB nitri 97.2 0.00098 2.1E-08 57.4 6.8 67 18-84 1-84 (785)
229 PLN02529 lysine-specific histo 97.2 0.0005 1.1E-08 58.7 5.0 37 16-52 161-197 (738)
230 PRK01747 mnmC bifunctional tRN 97.2 0.00049 1.1E-08 58.1 4.8 32 17-48 262-293 (662)
231 TIGR01989 COQ6 Ubiquinone bios 97.2 0.00047 1E-08 55.3 4.6 30 17-46 2-35 (437)
232 TIGR02061 aprA adenosine phosp 97.2 0.00048 1E-08 57.7 4.7 41 108-148 402-442 (614)
233 TIGR02732 zeta_caro_desat caro 97.2 0.0006 1.3E-08 55.4 5.1 34 18-51 2-35 (474)
234 PLN02985 squalene monooxygenas 97.2 0.00061 1.3E-08 56.0 5.1 32 17-48 45-76 (514)
235 COG2509 Uncharacterized FAD-de 97.2 0.00041 8.8E-09 55.6 3.9 45 96-147 438-482 (486)
236 PRK05732 2-octaprenyl-6-methox 97.2 0.00049 1.1E-08 54.1 4.4 31 17-47 5-38 (395)
237 TIGR01421 gluta_reduc_1 glutat 97.2 0.00044 9.5E-09 55.8 4.2 31 17-47 4-34 (450)
238 PRK06183 mhpA 3-(3-hydroxyphen 97.2 0.00056 1.2E-08 56.4 4.8 33 17-49 12-44 (538)
239 PRK07190 hypothetical protein; 97.2 0.0006 1.3E-08 55.6 4.8 32 17-48 7-38 (487)
240 PRK07845 flavoprotein disulfid 97.2 0.00065 1.4E-08 55.1 4.9 32 16-47 2-33 (466)
241 PF00890 FAD_binding_2: FAD bi 97.2 0.00056 1.2E-08 54.3 4.5 33 17-49 1-33 (417)
242 COG3380 Predicted NAD/FAD-depe 97.2 0.00084 1.8E-08 50.7 5.0 32 16-47 2-33 (331)
243 TIGR03329 Phn_aa_oxid putative 97.2 0.0006 1.3E-08 55.1 4.6 31 17-47 26-58 (460)
244 KOG2755|consensus 97.1 0.00092 2E-08 50.3 5.0 26 94-124 297-322 (334)
245 PRK09231 fumarate reductase fl 97.1 0.00077 1.7E-08 56.2 5.1 49 94-147 358-413 (582)
246 TIGR02053 MerA mercuric reduct 97.1 0.00072 1.6E-08 54.6 4.7 31 17-47 2-32 (463)
247 COG1252 Ndh NADH dehydrogenase 97.1 0.0044 9.6E-08 49.5 9.0 67 17-84 5-87 (405)
248 PRK06292 dihydrolipoamide dehy 97.1 0.00078 1.7E-08 54.3 4.9 30 17-46 5-34 (460)
249 TIGR01320 mal_quin_oxido malat 97.1 0.00075 1.6E-08 55.1 4.8 32 17-48 2-35 (483)
250 PLN02463 lycopene beta cyclase 97.1 0.00074 1.6E-08 54.6 4.5 32 17-48 30-61 (447)
251 PF13241 NAD_binding_7: Putati 97.1 0.00061 1.3E-08 44.0 3.3 36 8-47 4-39 (103)
252 PF01210 NAD_Gly3P_dh_N: NAD-d 97.1 0.00071 1.5E-08 47.0 3.8 32 17-48 1-32 (157)
253 TIGR01813 flavo_cyto_c flavocy 97.1 0.00094 2E-08 53.5 5.0 33 17-49 1-34 (439)
254 PLN02927 antheraxanthin epoxid 97.1 0.00081 1.7E-08 56.8 4.7 32 17-48 83-114 (668)
255 COG0562 Glf UDP-galactopyranos 97.1 0.0011 2.4E-08 51.1 5.0 36 17-52 3-38 (374)
256 PRK07818 dihydrolipoamide dehy 97.1 0.00083 1.8E-08 54.4 4.6 31 17-47 6-36 (466)
257 PLN02487 zeta-carotene desatur 97.0 0.0011 2.5E-08 55.1 5.1 35 17-51 77-111 (569)
258 KOG1298|consensus 97.0 0.0014 3E-08 51.9 5.1 31 17-47 47-77 (509)
259 PRK08294 phenol 2-monooxygenas 97.0 0.0011 2.3E-08 55.9 4.7 32 17-48 34-66 (634)
260 PF05834 Lycopene_cycl: Lycope 97.0 0.0011 2.3E-08 52.3 4.5 33 17-49 1-35 (374)
261 PRK06912 acoL dihydrolipoamide 97.0 0.0012 2.6E-08 53.4 4.8 31 17-47 2-32 (458)
262 PRK14727 putative mercuric red 97.0 0.0012 2.5E-08 53.8 4.8 32 17-48 18-49 (479)
263 PRK08274 tricarballylate dehyd 97.0 0.0012 2.6E-08 53.4 4.8 32 17-48 6-37 (466)
264 PTZ00367 squalene epoxidase; P 97.0 0.0011 2.3E-08 55.2 4.6 32 17-48 35-66 (567)
265 PLN02328 lysine-specific histo 97.0 0.0012 2.7E-08 56.8 5.0 36 16-51 239-274 (808)
266 TIGR01789 lycopene_cycl lycope 97.0 0.0015 3.3E-08 51.5 5.0 34 17-50 1-36 (370)
267 TIGR01373 soxB sarcosine oxida 97.0 0.0012 2.7E-08 52.2 4.6 31 17-47 32-64 (407)
268 PRK13748 putative mercuric red 96.9 0.0013 2.8E-08 54.4 4.7 31 17-47 100-130 (561)
269 PF13434 K_oxygenase: L-lysine 96.9 0.0011 2.3E-08 51.9 4.0 38 9-50 188-227 (341)
270 PRK07121 hypothetical protein; 96.9 0.0016 3.6E-08 53.0 5.1 33 17-49 22-54 (492)
271 PLN02612 phytoene desaturase 96.9 0.0017 3.6E-08 54.0 5.3 35 16-50 94-128 (567)
272 TIGR01176 fum_red_Fp fumarate 96.9 0.0015 3.3E-08 54.4 5.0 49 94-147 357-412 (580)
273 TIGR01470 cysG_Nterm siroheme 96.9 0.0046 9.9E-08 44.9 6.8 36 8-47 6-41 (205)
274 PRK14694 putative mercuric red 96.9 0.0014 3.1E-08 53.1 4.6 31 17-47 8-38 (468)
275 PTZ00052 thioredoxin reductase 96.9 0.0015 3.2E-08 53.6 4.5 30 17-46 7-36 (499)
276 TIGR01812 sdhA_frdA_Gneg succi 96.9 0.0017 3.7E-08 53.8 5.0 48 95-147 343-401 (566)
277 PRK14106 murD UDP-N-acetylmura 96.9 0.0051 1.1E-07 49.5 7.5 59 10-77 4-62 (450)
278 COG0578 GlpA Glycerol-3-phosph 96.9 0.0016 3.4E-08 53.6 4.6 32 17-48 14-45 (532)
279 PRK06481 fumarate reductase fl 96.9 0.0018 3.9E-08 53.1 5.0 33 17-49 63-95 (506)
280 PRK06263 sdhA succinate dehydr 96.9 0.0018 4E-08 53.5 5.0 49 94-147 348-402 (543)
281 PLN02676 polyamine oxidase 96.9 0.0018 3.8E-08 53.0 4.8 36 17-52 28-64 (487)
282 KOG1399|consensus 96.9 0.00088 1.9E-08 54.1 2.9 41 2-46 177-217 (448)
283 PRK06996 hypothetical protein; 96.8 0.0017 3.6E-08 51.5 4.3 31 18-48 14-48 (398)
284 PRK09077 L-aspartate oxidase; 96.8 0.0024 5.1E-08 52.8 5.3 49 94-147 353-408 (536)
285 PLN02661 Putative thiazole syn 96.8 0.0021 4.5E-08 50.4 4.7 33 17-49 94-127 (357)
286 PRK05257 malate:quinone oxidor 96.8 0.0018 3.9E-08 53.0 4.5 32 17-48 7-40 (494)
287 PLN03000 amine oxidase 96.8 0.0021 4.5E-08 55.8 5.0 37 16-52 185-221 (881)
288 PTZ00363 rab-GDP dissociation 96.8 0.0019 4.1E-08 52.2 4.5 36 17-52 6-41 (443)
289 PLN02546 glutathione reductase 96.8 0.0019 4.1E-08 53.7 4.6 30 17-46 81-110 (558)
290 TIGR01811 sdhA_Bsu succinate d 96.8 0.0024 5.2E-08 53.5 5.2 49 94-147 370-424 (603)
291 PRK06452 sdhA succinate dehydr 96.8 0.0026 5.6E-08 52.9 5.3 48 95-147 347-402 (566)
292 KOG2415|consensus 96.8 0.01 2.2E-07 47.7 8.1 31 17-47 78-114 (621)
293 PRK06719 precorrin-2 dehydroge 96.7 0.0023 5E-08 44.6 4.1 34 8-45 10-43 (157)
294 PRK13977 myosin-cross-reactive 96.7 0.0027 5.9E-08 52.7 5.1 36 17-52 24-63 (576)
295 PF04820 Trp_halogenase: Trypt 96.7 0.0022 4.9E-08 51.9 4.6 32 17-48 1-35 (454)
296 PRK08255 salicylyl-CoA 5-hydro 96.7 0.0025 5.4E-08 54.8 5.0 33 17-49 2-36 (765)
297 PF00732 GMC_oxred_N: GMC oxid 96.7 0.0029 6.4E-08 47.9 4.9 36 17-52 2-38 (296)
298 PRK12837 3-ketosteroid-delta-1 96.7 0.0025 5.5E-08 52.3 4.8 32 17-49 9-40 (513)
299 PTZ00383 malate:quinone oxidor 96.7 0.0024 5.2E-08 52.4 4.6 32 17-48 47-80 (497)
300 PLN02697 lycopene epsilon cycl 96.7 0.0024 5.2E-08 52.7 4.7 31 17-47 110-140 (529)
301 PTZ00058 glutathione reductase 96.7 0.0024 5.1E-08 53.1 4.6 31 17-47 50-80 (561)
302 PLN02568 polyamine oxidase 96.7 0.0028 6.2E-08 52.4 5.1 34 18-51 8-46 (539)
303 PRK12842 putative succinate de 96.7 0.0028 6E-08 52.8 5.0 33 17-49 11-43 (574)
304 PRK08401 L-aspartate oxidase; 96.7 0.0027 5.8E-08 51.6 4.8 32 16-47 2-33 (466)
305 PRK08071 L-aspartate oxidase; 96.7 0.0032 7E-08 51.7 5.3 48 95-147 333-387 (510)
306 PRK07804 L-aspartate oxidase; 96.7 0.003 6.5E-08 52.2 5.1 48 95-147 358-412 (541)
307 PRK13339 malate:quinone oxidor 96.7 0.0029 6.2E-08 51.9 4.8 30 17-46 8-39 (497)
308 TIGR00275 flavoprotein, HI0933 96.7 0.0018 3.9E-08 51.6 3.6 31 19-49 1-31 (400)
309 TIGR01812 sdhA_frdA_Gneg succi 96.7 0.0029 6.4E-08 52.5 5.0 32 17-48 1-32 (566)
310 COG0579 Predicted dehydrogenas 96.7 0.0032 7E-08 50.6 5.0 34 17-50 5-40 (429)
311 COG2072 TrkA Predicted flavopr 96.7 0.003 6.6E-08 51.0 4.9 32 17-48 10-42 (443)
312 PRK08641 sdhA succinate dehydr 96.7 0.0026 5.6E-08 53.2 4.5 49 94-147 355-409 (589)
313 PF02558 ApbA: Ketopantoate re 96.7 0.004 8.6E-08 42.5 4.8 47 18-75 1-47 (151)
314 PLN02507 glutathione reductase 96.7 0.0028 6E-08 51.9 4.5 30 17-46 27-56 (499)
315 PRK06327 dihydrolipoamide dehy 96.6 0.0031 6.7E-08 51.3 4.6 30 17-46 6-35 (475)
316 PRK06718 precorrin-2 dehydroge 96.6 0.0034 7.5E-08 45.5 4.4 35 8-46 7-41 (202)
317 PRK07573 sdhA succinate dehydr 96.6 0.003 6.4E-08 53.4 4.5 44 95-143 407-456 (640)
318 KOG1800|consensus 96.6 0.0076 1.7E-07 47.7 6.1 36 111-147 370-405 (468)
319 PRK02705 murD UDP-N-acetylmura 96.6 0.0089 1.9E-07 48.2 6.8 55 17-76 2-56 (459)
320 TIGR01423 trypano_reduc trypan 96.6 0.0042 9E-08 50.8 4.9 30 17-46 5-35 (486)
321 PRK07803 sdhA succinate dehydr 96.5 0.0041 9E-08 52.3 5.0 50 94-147 391-446 (626)
322 TIGR00551 nadB L-aspartate oxi 96.5 0.0051 1.1E-07 50.2 5.4 48 95-147 334-388 (488)
323 PRK09897 hypothetical protein; 96.5 0.0046 1E-07 51.1 5.1 35 16-50 2-38 (534)
324 COG1231 Monoamine oxidase [Ami 96.5 0.0048 1E-07 49.5 4.9 34 18-51 10-43 (450)
325 PRK07804 L-aspartate oxidase; 96.5 0.0048 1E-07 51.1 5.1 32 17-48 18-49 (541)
326 PRK06069 sdhA succinate dehydr 96.5 0.0042 9.2E-08 51.7 4.7 48 95-147 353-413 (577)
327 PRK12835 3-ketosteroid-delta-1 96.5 0.0048 1E-07 51.5 5.0 34 17-50 13-46 (584)
328 PF02737 3HCDH_N: 3-hydroxyacy 96.5 0.0054 1.2E-07 43.6 4.6 32 17-48 1-32 (180)
329 PRK12834 putative FAD-binding 96.5 0.0052 1.1E-07 50.9 5.1 32 17-48 6-37 (549)
330 PRK12844 3-ketosteroid-delta-1 96.5 0.0048 1E-07 51.2 4.9 33 17-49 8-40 (557)
331 PRK08641 sdhA succinate dehydr 96.5 0.0049 1.1E-07 51.5 5.0 31 17-47 5-35 (589)
332 PRK07803 sdhA succinate dehydr 96.5 0.0049 1.1E-07 51.9 4.9 31 17-47 10-40 (626)
333 PRK06452 sdhA succinate dehydr 96.4 0.0053 1.2E-07 51.1 5.0 31 17-47 7-37 (566)
334 PRK08626 fumarate reductase fl 96.4 0.0065 1.4E-07 51.5 5.5 32 17-48 7-38 (657)
335 TIGR00136 gidA glucose-inhibit 96.4 0.0047 1E-07 51.7 4.5 38 107-147 351-389 (617)
336 PF01488 Shikimate_DH: Shikima 96.4 0.025 5.4E-07 38.2 7.4 36 8-47 9-45 (135)
337 TIGR01438 TGR thioredoxin and 96.4 0.0052 1.1E-07 50.2 4.5 30 17-46 4-33 (484)
338 PRK05708 2-dehydropantoate 2-r 96.4 0.019 4.1E-07 44.1 7.4 31 17-47 4-34 (305)
339 PRK09078 sdhA succinate dehydr 96.4 0.0061 1.3E-07 51.1 4.9 31 17-47 14-44 (598)
340 PRK07057 sdhA succinate dehydr 96.4 0.0063 1.4E-07 50.9 5.0 31 17-47 14-44 (591)
341 PRK07843 3-ketosteroid-delta-1 96.4 0.0063 1.4E-07 50.6 4.9 33 17-49 9-41 (557)
342 PRK07512 L-aspartate oxidase; 96.4 0.0064 1.4E-07 50.0 4.9 49 94-147 341-396 (513)
343 PRK08958 sdhA succinate dehydr 96.3 0.0076 1.6E-07 50.4 5.4 32 17-48 9-40 (588)
344 PRK08401 L-aspartate oxidase; 96.3 0.007 1.5E-07 49.1 5.0 48 94-146 310-364 (466)
345 PTZ00139 Succinate dehydrogena 96.3 0.0066 1.4E-07 51.1 4.9 31 17-47 31-61 (617)
346 COG3075 GlpB Anaerobic glycero 96.3 0.0063 1.4E-07 47.3 4.3 30 18-47 5-34 (421)
347 PLN00128 Succinate dehydrogena 96.3 0.0087 1.9E-07 50.6 5.5 32 17-48 52-83 (635)
348 PRK08626 fumarate reductase fl 96.3 0.0067 1.5E-07 51.4 4.9 49 94-147 372-428 (657)
349 TIGR01816 sdhA_forward succina 96.3 0.0074 1.6E-07 50.2 4.9 49 94-147 331-395 (565)
350 PRK05329 anaerobic glycerol-3- 96.3 0.0067 1.5E-07 48.8 4.5 31 17-47 4-34 (422)
351 PRK06854 adenylylsulfate reduc 96.3 0.0067 1.5E-07 50.9 4.6 31 17-47 13-45 (608)
352 PRK06069 sdhA succinate dehydr 96.3 0.0073 1.6E-07 50.4 4.8 31 17-47 7-40 (577)
353 KOG0685|consensus 96.3 0.0092 2E-07 48.3 5.1 36 17-52 23-59 (498)
354 PRK07573 sdhA succinate dehydr 96.2 0.0074 1.6E-07 51.0 4.8 31 17-47 37-67 (640)
355 COG2907 Predicted NAD/FAD-bind 96.2 0.0054 1.2E-07 48.0 3.6 37 16-53 9-45 (447)
356 COG1206 Gid NAD(FAD)-utilizing 96.2 0.0052 1.1E-07 47.8 3.3 31 18-48 6-36 (439)
357 COG1249 Lpd Pyruvate/2-oxoglut 96.2 0.0097 2.1E-07 48.3 4.9 34 17-50 6-39 (454)
358 PRK05945 sdhA succinate dehydr 96.2 0.0088 1.9E-07 49.9 4.8 48 95-147 352-412 (575)
359 TIGR00551 nadB L-aspartate oxi 96.2 0.0096 2.1E-07 48.6 5.0 31 17-48 4-34 (488)
360 PRK08205 sdhA succinate dehydr 96.2 0.0088 1.9E-07 50.0 4.8 48 95-147 357-417 (583)
361 PRK08293 3-hydroxybutyryl-CoA 96.2 0.0082 1.8E-07 45.6 4.3 33 16-48 4-36 (287)
362 PRK07066 3-hydroxybutyryl-CoA 96.1 0.0094 2E-07 46.3 4.6 33 16-48 8-40 (321)
363 PRK06175 L-aspartate oxidase; 96.1 0.01 2.2E-07 47.8 5.0 48 94-146 331-385 (433)
364 PRK09260 3-hydroxybutyryl-CoA 96.1 0.0073 1.6E-07 45.9 4.0 33 16-48 2-34 (288)
365 TIGR01811 sdhA_Bsu succinate d 96.1 0.0075 1.6E-07 50.6 4.2 31 18-48 1-31 (603)
366 PF03721 UDPG_MGDP_dh_N: UDP-g 96.1 0.022 4.7E-07 40.7 6.0 31 17-47 2-32 (185)
367 PLN02815 L-aspartate oxidase 96.1 0.0096 2.1E-07 49.9 4.8 49 94-147 377-432 (594)
368 PRK05945 sdhA succinate dehydr 96.1 0.011 2.4E-07 49.3 5.2 32 17-48 5-38 (575)
369 PRK05562 precorrin-2 dehydroge 96.1 0.0096 2.1E-07 43.9 4.2 34 9-46 23-56 (223)
370 PRK07819 3-hydroxybutyryl-CoA 96.1 0.0086 1.9E-07 45.7 4.1 33 17-49 7-39 (286)
371 PRK08275 putative oxidoreducta 96.1 0.0099 2.2E-07 49.3 4.6 32 17-48 11-44 (554)
372 PTZ00153 lipoamide dehydrogena 96.0 0.0095 2.1E-07 50.5 4.5 31 17-47 118-148 (659)
373 PLN02815 L-aspartate oxidase 96.0 0.013 2.9E-07 49.1 5.3 31 17-48 31-61 (594)
374 PRK12845 3-ketosteroid-delta-1 96.0 0.011 2.4E-07 49.2 4.8 33 17-50 18-50 (564)
375 PRK06175 L-aspartate oxidase; 96.0 0.014 3.1E-07 47.0 5.2 32 17-49 6-37 (433)
376 PRK06134 putative FAD-binding 96.0 0.013 2.8E-07 48.9 5.1 33 17-49 14-46 (581)
377 TIGR02462 pyranose_ox pyranose 96.0 0.013 2.8E-07 48.6 5.0 34 17-50 2-35 (544)
378 TIGR02061 aprA adenosine phosp 96.0 0.012 2.5E-07 49.6 4.7 31 17-47 1-35 (614)
379 PRK06522 2-dehydropantoate 2-r 96.0 0.012 2.7E-07 44.6 4.5 31 17-47 2-32 (304)
380 PRK02106 choline dehydrogenase 95.9 0.011 2.4E-07 49.0 4.4 33 17-49 7-40 (560)
381 KOG1276|consensus 95.9 0.012 2.5E-07 47.2 4.2 38 9-50 9-48 (491)
382 COG0569 TrkA K+ transport syst 95.9 0.012 2.6E-07 43.3 4.0 32 17-48 2-33 (225)
383 PRK08958 sdhA succinate dehydr 95.9 0.014 3E-07 48.8 4.8 38 110-147 378-422 (588)
384 PRK12839 hypothetical protein; 95.9 0.015 3.3E-07 48.5 5.0 34 17-50 10-43 (572)
385 PRK07395 L-aspartate oxidase; 95.9 0.013 2.9E-07 48.7 4.6 31 17-48 11-41 (553)
386 PRK14175 bifunctional 5,10-met 95.9 0.027 5.9E-07 43.0 6.0 39 6-48 153-192 (286)
387 PRK06129 3-hydroxyacyl-CoA deh 95.9 0.013 2.9E-07 44.9 4.3 32 17-48 4-35 (308)
388 PRK12843 putative FAD-binding 95.9 0.015 3.4E-07 48.5 5.0 32 17-48 18-49 (578)
389 PRK09078 sdhA succinate dehydr 95.9 0.013 2.8E-07 49.1 4.5 39 109-147 382-427 (598)
390 PRK06035 3-hydroxyacyl-CoA deh 95.8 0.013 2.7E-07 44.7 4.1 33 16-48 4-36 (291)
391 PRK06249 2-dehydropantoate 2-r 95.8 0.018 4E-07 44.3 5.0 32 17-48 7-38 (313)
392 PRK07395 L-aspartate oxidase; 95.8 0.014 2.9E-07 48.6 4.5 46 94-144 347-399 (553)
393 PLN02976 amine oxidase 95.8 0.015 3.3E-07 53.1 5.0 36 17-52 695-730 (1713)
394 PF02254 TrkA_N: TrkA-N domain 95.8 0.068 1.5E-06 34.6 7.0 46 18-73 1-46 (116)
395 PRK05675 sdhA succinate dehydr 95.8 0.012 2.6E-07 49.1 4.0 38 110-147 360-404 (570)
396 PTZ00306 NADH-dependent fumara 95.8 0.016 3.5E-07 52.1 5.0 34 16-49 410-443 (1167)
397 PRK07530 3-hydroxybutyryl-CoA 95.8 0.014 3.1E-07 44.3 4.1 33 16-48 5-37 (292)
398 PRK06263 sdhA succinate dehydr 95.8 0.014 3.1E-07 48.3 4.3 30 17-47 9-38 (543)
399 PRK12921 2-dehydropantoate 2-r 95.7 0.017 3.6E-07 44.0 4.4 30 17-46 2-31 (305)
400 PRK09231 fumarate reductase fl 95.7 0.018 3.9E-07 48.2 4.9 32 17-48 6-39 (582)
401 PLN00128 Succinate dehydrogena 95.7 0.016 3.5E-07 48.9 4.6 38 110-147 421-465 (635)
402 PRK08071 L-aspartate oxidase; 95.7 0.017 3.7E-07 47.5 4.6 31 17-48 5-35 (510)
403 TIGR01176 fum_red_Fp fumarate 95.7 0.019 4.2E-07 48.0 4.9 32 17-48 5-38 (580)
404 PRK07057 sdhA succinate dehydr 95.7 0.019 4E-07 48.1 4.8 48 95-147 362-425 (591)
405 TIGR03378 glycerol3P_GlpB glyc 95.7 0.26 5.7E-06 39.7 11.0 62 19-81 228-290 (419)
406 cd01080 NAD_bind_m-THF_DH_Cycl 95.7 0.049 1.1E-06 38.4 6.1 35 9-47 42-77 (168)
407 KOG1800|consensus 95.7 0.064 1.4E-06 42.6 7.3 61 17-77 22-96 (468)
408 COG1648 CysG Siroheme synthase 95.6 0.019 4E-07 42.0 4.1 37 7-47 8-44 (210)
409 KOG2852|consensus 95.6 0.0057 1.2E-07 46.8 1.4 32 16-47 11-48 (380)
410 PF02826 2-Hacid_dh_C: D-isome 95.6 0.025 5.4E-07 40.0 4.6 41 5-49 30-70 (178)
411 PTZ00139 Succinate dehydrogena 95.6 0.021 4.7E-07 48.0 4.9 48 95-147 380-444 (617)
412 PRK13800 putative oxidoreducta 95.6 0.019 4.2E-07 50.3 4.6 31 17-47 15-45 (897)
413 COG1053 SdhA Succinate dehydro 95.5 0.024 5.1E-07 47.3 4.9 34 17-50 8-41 (562)
414 PRK14194 bifunctional 5,10-met 95.5 0.02 4.3E-07 44.0 4.1 40 5-48 153-193 (301)
415 TIGR02853 spore_dpaA dipicolin 95.5 0.019 4E-07 43.9 3.9 39 6-48 146-184 (287)
416 PRK14192 bifunctional 5,10-met 95.5 0.025 5.5E-07 43.1 4.5 39 5-47 153-192 (283)
417 cd01078 NAD_bind_H4MPT_DH NADP 95.5 0.027 6E-07 40.2 4.5 38 6-47 23-61 (194)
418 COG4529 Uncharacterized protei 95.4 0.025 5.5E-07 45.8 4.6 35 16-50 2-39 (474)
419 KOG2311|consensus 95.4 0.017 3.7E-07 47.1 3.4 30 17-46 30-59 (679)
420 TIGR01810 betA choline dehydro 95.4 0.022 4.8E-07 47.0 4.2 32 18-49 2-34 (532)
421 COG3486 IucD Lysine/ornithine 95.4 0.23 5E-06 39.8 9.6 32 18-49 190-225 (436)
422 TIGR03378 glycerol3P_GlpB glyc 95.4 0.027 5.8E-07 45.3 4.5 31 17-47 2-32 (419)
423 PRK08205 sdhA succinate dehydr 95.3 0.029 6.4E-07 46.9 4.8 30 17-47 7-36 (583)
424 PRK09077 L-aspartate oxidase; 95.3 0.03 6.6E-07 46.3 4.7 31 17-48 10-40 (536)
425 PRK01710 murD UDP-N-acetylmura 95.3 0.084 1.8E-06 42.8 7.1 57 9-74 12-68 (458)
426 PF01262 AlaDh_PNT_C: Alanine 95.3 0.045 9.7E-07 38.3 4.9 32 16-47 21-52 (168)
427 cd00401 AdoHcyase S-adenosyl-L 95.2 0.033 7.1E-07 44.7 4.6 38 6-47 197-234 (413)
428 PLN02545 3-hydroxybutyryl-CoA 95.2 0.039 8.4E-07 42.1 4.8 33 16-48 5-37 (295)
429 PRK11730 fadB multifunctional 95.2 0.037 8E-07 47.4 5.0 34 16-49 314-347 (715)
430 PRK05808 3-hydroxybutyryl-CoA 95.2 0.028 6E-07 42.6 3.9 32 17-48 5-36 (282)
431 cd01075 NAD_bind_Leu_Phe_Val_D 95.2 0.037 8E-07 40.0 4.3 38 6-47 23-60 (200)
432 PRK14620 NAD(P)H-dependent gly 95.2 0.041 8.8E-07 42.5 4.8 30 18-47 3-32 (326)
433 PRK06130 3-hydroxybutyryl-CoA 95.1 0.033 7.2E-07 42.7 4.3 33 16-48 5-37 (311)
434 PRK08274 tricarballylate dehyd 95.1 0.03 6.5E-07 45.3 4.2 49 94-147 399-460 (466)
435 PF13454 NAD_binding_9: FAD-NA 95.1 0.032 6.9E-07 38.6 3.7 30 19-48 1-35 (156)
436 PF00670 AdoHcyase_NAD: S-aden 95.1 0.032 7E-07 39.1 3.6 38 6-47 18-55 (162)
437 TIGR02437 FadB fatty oxidation 95.1 0.042 9E-07 47.1 5.0 34 16-49 314-347 (714)
438 COG0445 GidA Flavin-dependent 95.1 0.024 5.2E-07 46.8 3.4 30 17-46 6-35 (621)
439 COG2303 BetA Choline dehydroge 95.1 0.031 6.7E-07 46.4 4.1 33 17-49 9-41 (542)
440 PRK14191 bifunctional 5,10-met 94.9 0.046 1E-06 41.7 4.4 39 5-47 151-190 (285)
441 PRK08229 2-dehydropantoate 2-r 94.9 0.044 9.5E-07 42.5 4.5 31 17-47 4-34 (341)
442 KOG0042|consensus 94.9 0.011 2.5E-07 48.6 1.2 32 17-48 69-100 (680)
443 COG1893 ApbA Ketopantoate redu 94.9 0.037 7.9E-07 42.7 3.9 32 17-48 2-33 (307)
444 KOG0404|consensus 94.9 0.2 4.4E-06 37.3 7.5 65 17-82 10-97 (322)
445 PF03807 F420_oxidored: NADP o 94.9 0.23 4.9E-06 31.0 7.0 48 17-72 1-51 (96)
446 PF00289 CPSase_L_chain: Carba 94.9 0.04 8.7E-07 36.1 3.5 32 16-47 3-34 (110)
447 PF13460 NAD_binding_10: NADH( 94.9 0.058 1.3E-06 37.6 4.6 32 18-49 1-33 (183)
448 TIGR02279 PaaC-3OHAcCoADH 3-hy 94.8 0.04 8.6E-07 45.4 4.1 34 16-49 6-39 (503)
449 KOG1335|consensus 94.8 0.093 2E-06 41.8 5.8 35 17-51 41-75 (506)
450 TIGR03376 glycerol3P_DH glycer 94.8 0.13 2.8E-06 40.3 6.7 32 17-48 1-40 (342)
451 PRK07512 L-aspartate oxidase; 94.7 0.039 8.5E-07 45.4 3.9 30 17-48 11-40 (513)
452 TIGR02441 fa_ox_alpha_mit fatt 94.7 0.053 1.1E-06 46.7 4.7 35 15-49 335-369 (737)
453 PLN02785 Protein HOTHEAD 94.6 0.052 1.1E-06 45.5 4.4 32 17-49 57-88 (587)
454 PF00899 ThiF: ThiF family; I 94.6 0.063 1.4E-06 36.1 4.1 30 17-46 4-34 (135)
455 PRK07846 mycothione reductase; 94.6 0.054 1.2E-06 43.8 4.4 29 17-47 3-31 (451)
456 PRK02472 murD UDP-N-acetylmura 94.6 0.14 3E-06 41.2 6.7 55 10-74 4-58 (447)
457 TIGR03862 flavo_PP4765 unchara 94.6 0.045 9.7E-07 43.5 3.8 40 108-148 332-375 (376)
458 PF13478 XdhC_C: XdhC Rossmann 94.6 0.05 1.1E-06 37.0 3.5 32 18-49 1-32 (136)
459 PTZ00075 Adenosylhomocysteinas 94.6 0.064 1.4E-06 43.8 4.6 39 6-48 249-287 (476)
460 PRK14189 bifunctional 5,10-met 94.5 0.054 1.2E-06 41.4 4.0 39 5-47 152-191 (285)
461 COG0686 Ald Alanine dehydrogen 94.5 0.041 8.9E-07 42.5 3.3 31 17-47 170-200 (371)
462 PRK14188 bifunctional 5,10-met 94.5 0.063 1.4E-06 41.2 4.3 37 6-46 153-190 (296)
463 PRK00094 gpsA NAD(P)H-dependen 94.5 0.076 1.6E-06 40.7 4.8 31 17-47 3-33 (325)
464 KOG1336|consensus 94.5 0.086 1.9E-06 42.8 5.1 68 16-83 75-156 (478)
465 TIGR00936 ahcY adenosylhomocys 94.5 0.066 1.4E-06 42.9 4.5 37 8-48 192-228 (406)
466 TIGR02354 thiF_fam2 thiamine b 94.5 0.072 1.6E-06 38.5 4.4 34 10-47 20-54 (200)
467 PRK14619 NAD(P)H-dependent gly 94.5 0.078 1.7E-06 40.7 4.8 31 18-48 7-37 (308)
468 PRK14618 NAD(P)H-dependent gly 94.5 0.075 1.6E-06 41.1 4.7 30 18-47 7-36 (328)
469 cd05191 NAD_bind_amino_acid_DH 94.5 0.093 2E-06 32.5 4.3 35 8-46 20-55 (86)
470 TIGR03452 mycothione_red mycot 94.5 0.061 1.3E-06 43.5 4.4 29 17-47 4-32 (452)
471 TIGR02485 CobZ_N-term precorri 94.4 0.038 8.3E-07 44.3 3.1 29 20-48 1-29 (432)
472 PRK05476 S-adenosyl-L-homocyst 94.4 0.066 1.4E-06 43.2 4.4 38 7-48 208-245 (425)
473 PRK09496 trkA potassium transp 94.4 0.17 3.7E-06 40.6 6.9 31 17-47 2-32 (453)
474 PRK07531 bifunctional 3-hydrox 94.4 0.068 1.5E-06 43.9 4.5 32 17-48 6-37 (495)
475 PRK08268 3-hydroxy-acyl-CoA de 94.4 0.058 1.3E-06 44.5 4.1 34 16-49 8-41 (507)
476 COG0240 GpsA Glycerol-3-phosph 94.4 0.061 1.3E-06 41.8 3.9 32 16-47 2-33 (329)
477 PRK04308 murD UDP-N-acetylmura 94.4 0.18 3.8E-06 40.7 6.8 56 10-75 4-59 (445)
478 PRK15116 sulfur acceptor prote 94.3 0.089 1.9E-06 39.9 4.6 34 10-47 29-63 (268)
479 PLN02494 adenosylhomocysteinas 94.2 0.082 1.8E-06 43.1 4.6 38 7-48 250-287 (477)
480 TIGR00136 gidA glucose-inhibit 94.2 0.063 1.4E-06 45.2 4.1 31 17-47 2-32 (617)
481 PRK11064 wecC UDP-N-acetyl-D-m 94.2 0.07 1.5E-06 42.8 4.2 32 17-48 5-36 (415)
482 TIGR00518 alaDH alanine dehydr 94.2 0.098 2.1E-06 41.4 4.9 30 18-47 170-199 (370)
483 TIGR02964 xanthine_xdhC xanthi 94.1 0.11 2.4E-06 38.9 4.8 33 17-49 102-134 (246)
484 PRK08306 dipicolinate synthase 94.1 0.096 2.1E-06 40.2 4.6 37 8-48 149-185 (296)
485 PTZ00345 glycerol-3-phosphate 94.1 0.2 4.3E-06 39.7 6.4 33 18-50 14-53 (365)
486 COG1250 FadB 3-hydroxyacyl-CoA 94.1 0.098 2.1E-06 40.4 4.6 34 16-49 4-37 (307)
487 PRK00536 speE spermidine synth 94.1 0.09 2E-06 39.7 4.3 57 15-73 73-130 (262)
488 PRK11154 fadJ multifunctional 94.1 0.097 2.1E-06 44.9 5.0 34 15-48 309-343 (708)
489 PRK10669 putative cation:proto 94.0 0.19 4.2E-06 41.8 6.6 49 16-74 418-466 (558)
490 TIGR02440 FadJ fatty oxidation 94.0 0.11 2.3E-06 44.6 5.1 34 16-49 305-339 (699)
491 PRK00258 aroE shikimate 5-dehy 94.0 0.1 2.2E-06 39.5 4.5 37 7-47 119-156 (278)
492 PF00106 adh_short: short chai 93.9 0.43 9.3E-06 32.5 7.2 32 16-47 1-34 (167)
493 KOG2853|consensus 93.8 0.077 1.7E-06 41.8 3.6 34 17-50 88-125 (509)
494 cd01065 NAD_bind_Shikimate_DH 93.8 0.13 2.7E-06 35.1 4.4 35 9-47 17-52 (155)
495 TIGR03026 NDP-sugDHase nucleot 93.8 0.086 1.9E-06 42.2 4.0 32 17-48 2-33 (411)
496 PRK04148 hypothetical protein; 93.8 0.063 1.4E-06 36.5 2.7 30 18-48 20-49 (134)
497 PRK13243 glyoxylate reductase; 93.8 0.11 2.4E-06 40.5 4.4 38 6-47 145-182 (333)
498 PRK12475 thiamine/molybdopteri 93.8 0.12 2.5E-06 40.5 4.5 34 10-47 23-57 (338)
499 PRK10637 cysG siroheme synthas 93.7 0.094 2E-06 42.6 4.1 35 8-46 9-43 (457)
500 COG1004 Ugd Predicted UDP-gluc 93.7 0.27 5.9E-06 39.2 6.4 31 17-47 2-32 (414)
No 1
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.4e-26 Score=174.38 Aligned_cols=132 Identities=41% Similarity=0.618 Sum_probs=114.9
Q ss_pred hhhhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEec
Q psy5231 3 YEFGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIG 82 (148)
Q Consensus 3 ~~~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~ 82 (148)
+|+| .+++|+| +|||||++|+|.|++|++++++||+++|++.+++.+.+.+++++ ..+|++++++.+.++.+
T Consensus 136 ~cdg-~~~~k~v----~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra~~~~~~~l~~---~~~i~~~~~~~i~ei~G 207 (305)
T COG0492 136 TCDG-FFKGKDV----VVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRAEEILVERLKK---NVKIEVLTNTVVKEILG 207 (305)
T ss_pred ecCc-cccCCeE----EEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCcCHHHHHHHHh---cCCeEEEeCCceeEEec
Confidence 5888 8999999 99999999999999999999999999999999998888888886 45999999999999887
Q ss_pred CCe--------------------e------------ecceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchh
Q psy5231 83 NNT--------------------V------------TGQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDK 129 (148)
Q Consensus 83 ~~~--------------------~------------~~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~ 129 (148)
++. | .....++ .|+|.+|+. ++||+|||||+||++..+ ++|
T Consensus 208 ~~v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~~~~~g~I~v~~~-----~~TsvpGifAaGDv~~~~-~rq 281 (305)
T COG0492 208 DDVEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVVDEE-----METSVPGIFAAGDVADKN-GRQ 281 (305)
T ss_pred CccceEEEEecCCceEEEEeceEEEecCCCCchHHHhhccccCCCCcEEcCCC-----cccCCCCEEEeEeeccCc-ccE
Confidence 531 0 0111134 489999999 999999999999999887 569
Q ss_pred HHHHHHHHHHHHHHHHhhC
Q psy5231 130 QLLALGSGCMAALDAQRYL 148 (148)
Q Consensus 130 ~~~A~~~G~~aA~~i~~~l 148 (148)
+.+|+++|.+||.++.+||
T Consensus 282 i~ta~~~G~~Aa~~a~~~l 300 (305)
T COG0492 282 IATAAGDGAIAALSAERYL 300 (305)
T ss_pred EeehhhhHHHHHHHHHHHh
Confidence 9999999999999999986
No 2
>KOG0404|consensus
Probab=99.92 E-value=4.8e-25 Score=158.92 Aligned_cols=133 Identities=38% Similarity=0.640 Sum_probs=116.2
Q ss_pred hhhhh--hcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEe
Q psy5231 4 EFGIL--ALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKII 81 (148)
Q Consensus 4 ~~g~~--~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~ 81 (148)
|.|.. |++|+. +|||||++++|.|.+|.+.+++|++++|++.|+++..+.+++.+ +.+|++++++.+.+..
T Consensus 148 CDGaapifrnk~l----aVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRAs~~Mq~ra~~---npnI~v~~nt~~~ea~ 220 (322)
T KOG0404|consen 148 CDGAAPIFRNKPL----AVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRASKIMQQRAEK---NPNIEVLYNTVAVEAL 220 (322)
T ss_pred ccCcchhhcCCee----EEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhHHHHHHHHHhc---CCCeEEEechhhhhhc
Confidence 55554 899999 99999999999999999999999999999999998888888876 8899999998877666
Q ss_pred cCCe-----------------------------------eecceeecC-CeEEecCCCCcccccCCCCCeEEecccCccc
Q psy5231 82 GNNT-----------------------------------VTGQLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLY 125 (148)
Q Consensus 82 ~~~~-----------------------------------~~~~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~ 125 (148)
+++. +..++++|. |+|.+.+.+ -.||+|++||+||+.+..
T Consensus 221 gd~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~gqve~d~~GYi~t~pgt----s~TsvpG~FAAGDVqD~k 296 (322)
T KOG0404|consen 221 GDGKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFLKGQVELDEDGYIVTRPGT----SLTSVPGVFAAGDVQDKK 296 (322)
T ss_pred cCcccccceEEEecccCcccccccceeEEEecCCchhhHhcCceeeccCceEEeccCc----ccccccceeeccccchHH
Confidence 5532 234678874 999998775 889999999999999887
Q ss_pred cchhHHHHHHHHHHHHHHHHhhC
Q psy5231 126 FIDKQLLALGSGCMAALDAQRYL 148 (148)
Q Consensus 126 ~~~~~~~A~~~G~~aA~~i~~~l 148 (148)
++|..+|+++|++||+...+||
T Consensus 297 -yRQAvTaAgsGciaaldAe~yL 318 (322)
T KOG0404|consen 297 -YRQAVTAAGSGCIAALDAERYL 318 (322)
T ss_pred -HHHHHhhhccchhhhhhHHHHh
Confidence 7899999999999999999987
No 3
>PRK10262 thioredoxin reductase; Provisional
Probab=99.91 E-value=6.8e-24 Score=162.85 Aligned_cols=141 Identities=47% Similarity=0.712 Sum_probs=112.8
Q ss_pred hhhhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEec
Q psy5231 3 YEFGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIG 82 (148)
Q Consensus 3 ~~~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~ 82 (148)
++.++...++++ +|||+|++|+|+|..|++++++||+++|.+.+..++.+.+.+++.|++.||++++++.+.++.+
T Consensus 138 ~~~~~~~~g~~v----vVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~ 213 (321)
T PRK10262 138 TCDGFFYRNQKV----AVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTG 213 (321)
T ss_pred cCCHHHcCCCEE----EEECCCHHHHHHHHHHHhhCCEEEEEEECCccCCCHHHHHHHHhhccCCCeEEEeCCEEEEEEc
Confidence 456667778888 9999999999999999999999999999887766666777888888889999999998888765
Q ss_pred CC------------------e------------------eecceeecCCeEEecCCCCcccccCCCCCeEEecccCcccc
Q psy5231 83 NN------------------T------------------VTGQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF 126 (148)
Q Consensus 83 ~~------------------~------------------~~~~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~ 126 (148)
+. . +...+.+++|+|.+|+.+..+.++|+.|+|||+|||++.+
T Consensus 214 ~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~~l~~~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~- 292 (321)
T PRK10262 214 DQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHI- 292 (321)
T ss_pred CCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhccccccCCEEEECCCCcccccccCCCCEEECeeccCCC-
Confidence 42 0 0112344468899987210001899999999999999765
Q ss_pred chhHHHHHHHHHHHHHHHHhhC
Q psy5231 127 IDKQLLALGSGCMAALDAQRYL 148 (148)
Q Consensus 127 ~~~~~~A~~~G~~aA~~i~~~l 148 (148)
++++..|+++|.+||..|++||
T Consensus 293 ~~~~~~A~~~g~~Aa~~~~~~l 314 (321)
T PRK10262 293 YRQAITSAGTGCMAALDAERYL 314 (321)
T ss_pred cceEEEEehhHHHHHHHHHHHH
Confidence 4688999999999999999986
No 4
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=4.6e-24 Score=162.23 Aligned_cols=132 Identities=33% Similarity=0.497 Sum_probs=117.9
Q ss_pred hhhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEecC
Q psy5231 4 EFGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGN 83 (148)
Q Consensus 4 ~~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~ 83 (148)
|.|.+|+||+| +|||||++|+|+|..|+-.-.+||+++-.++++++.-+.+++.. -.|+.++++..-++|.++
T Consensus 347 CDGPLF~gK~V----AVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLkAD~VLq~kl~s---l~Nv~ii~na~Ttei~Gd 419 (520)
T COG3634 347 CDGPLFKGKRV----AVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKADAVLQDKLRS---LPNVTIITNAQTTEVKGD 419 (520)
T ss_pred CCCcccCCceE----EEECCCcchHHHHHhHHhhhheeeeeecchhhhhHHHHHHHHhc---CCCcEEEecceeeEEecC
Confidence 78999999999 99999999999999999999999999999899888888888876 579999999999999887
Q ss_pred Ce-----------------------------------eecceeecC-CeEEecCCCCcccccCCCCCeEEecccCccccc
Q psy5231 84 NT-----------------------------------VTGQLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFI 127 (148)
Q Consensus 84 ~~-----------------------------------~~~~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~ 127 (148)
+. +.+.+++++ |-|.+|.. ..||+|||||+|||+..+ +
T Consensus 420 g~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~vel~~rGEIivD~~-----g~TsvpGvFAAGD~T~~~-y 493 (520)
T COG3634 420 GDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGAVELNRRGEIIVDAR-----GETNVPGVFAAGDCTTVP-Y 493 (520)
T ss_pred CceecceEEEeccCCceeEEEeeeeEEEEecccChhHhhchhhcCcCccEEEecC-----CCcCCCceeecCcccCCc-c
Confidence 42 122456664 88999999 999999999999999998 7
Q ss_pred hhHHHHHHHHHHHHHHHHhhC
Q psy5231 128 DKQLLALGSGCMAALDAQRYL 148 (148)
Q Consensus 128 ~~~~~A~~~G~~aA~~i~~~l 148 (148)
+|+.+|+++|..|+.+...||
T Consensus 494 KQIIIamG~GA~AaL~AFDyL 514 (520)
T COG3634 494 KQIIIAMGEGAKASLSAFDYL 514 (520)
T ss_pred ceEEEEecCcchhhhhhhhhh
Confidence 999999999999999998886
No 5
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.90 E-value=1.3e-22 Score=161.77 Aligned_cols=126 Identities=21% Similarity=0.338 Sum_probs=109.5
Q ss_pred cccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCC--e---
Q psy5231 13 PVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN--T--- 85 (148)
Q Consensus 13 ~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~--~--- 85 (148)
++|++++|||||.+|+|+|..++++|.+||+++|.+++.. ++++.+.+.+.|++.++++++++.+++++.++ .
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~ 250 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVT 250 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEE
Confidence 7899999999999999999999999999999999998854 78899999999988889999999998886432 1
Q ss_pred ----------------------------e-ecceeecC-CeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHH
Q psy5231 86 ----------------------------V-TGQLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALG 135 (148)
Q Consensus 86 ----------------------------~-~~~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~ 135 (148)
+ ..++++++ |+|.||.. ++|++|+|||+|||++.+ ...+.|..
T Consensus 251 ~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~-----~~Tnvp~IyA~GDV~~~~--~Lah~A~~ 323 (454)
T COG1249 251 LEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQ-----MTTNVPGIYAIGDVIGGP--MLAHVAMA 323 (454)
T ss_pred EecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCc-----cccCCCCEEEeeccCCCc--ccHhHHHH
Confidence 0 12567775 89999965 888899999999998887 48899999
Q ss_pred HHHHHHHHHH
Q psy5231 136 SGCMAALDAQ 145 (148)
Q Consensus 136 ~G~~aA~~i~ 145 (148)
||+.||.+|.
T Consensus 324 eg~iaa~~i~ 333 (454)
T COG1249 324 EGRIAAENIA 333 (454)
T ss_pred HHHHHHHHHh
Confidence 9999999986
No 6
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.86 E-value=9.5e-21 Score=151.65 Aligned_cols=125 Identities=16% Similarity=0.222 Sum_probs=102.6
Q ss_pred ccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecC--C-----
Q psy5231 14 VIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGN--N----- 84 (148)
Q Consensus 14 v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~--~----- 84 (148)
.+++++|||||++|+|+|..|+++|++||++++.+.+.. ++++.+.+++.|++.||++++++.++++..+ +
T Consensus 165 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~ 244 (450)
T TIGR01421 165 LPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIH 244 (450)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEE
Confidence 345669999999999999999999999999999876532 5667788888888899999999988887532 1
Q ss_pred -----e-------------------e--e-cceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHH
Q psy5231 85 -----T-------------------V--T-GQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGS 136 (148)
Q Consensus 85 -----~-------------------~--~-~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~ 136 (148)
. + . .+++++ +|++.+|++ ++|++|+|||+|||++.+ ..+..|..+
T Consensus 245 ~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~-----~~T~~p~IyAiGD~~~~~--~~~~~A~~~ 317 (450)
T TIGR01421 245 FEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEY-----QNTNVPGIYALGDVVGKV--ELTPVAIAA 317 (450)
T ss_pred ECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCC-----CcCCCCCEEEEEecCCCc--ccHHHHHHH
Confidence 1 0 0 134455 378999998 999999999999999876 578899999
Q ss_pred HHHHHHHHH
Q psy5231 137 GCMAALDAQ 145 (148)
Q Consensus 137 G~~aA~~i~ 145 (148)
|+.||.+|.
T Consensus 318 g~~aa~~i~ 326 (450)
T TIGR01421 318 GRKLSERLF 326 (450)
T ss_pred HHHHHHHHh
Confidence 999999986
No 7
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.86 E-value=3e-21 Score=156.89 Aligned_cols=132 Identities=33% Similarity=0.504 Sum_probs=105.7
Q ss_pred hhhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEecC
Q psy5231 4 EFGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGN 83 (148)
Q Consensus 4 ~~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~ 83 (148)
+.+..++||+| +|||||++|+|+|..|+..+++||++++.+.+.....+.+++.+ ..||++++++.+.++.++
T Consensus 344 ~~~~~~~gk~V----vVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~~~~l~~~l~~---~~gI~i~~~~~v~~i~~~ 416 (517)
T PRK15317 344 CDGPLFKGKRV----AVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKADQVLQDKLRS---LPNVTIITNAQTTEVTGD 416 (517)
T ss_pred cCchhcCCCEE----EEECCCHHHHHHHHHHHhcCCEEEEEEECccccccHHHHHHHhc---CCCcEEEECcEEEEEEcC
Confidence 34555678888 99999999999999999999999999998877655444444442 369999999988887654
Q ss_pred C-e----------------------------------eecceeecC-CeEEecCCCCcccccCCCCCeEEecccCccccc
Q psy5231 84 N-T----------------------------------VTGQLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFI 127 (148)
Q Consensus 84 ~-~----------------------------------~~~~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~ 127 (148)
+ . +...+.++. |+|.+|+. ++|++|+|||+|||+..+ +
T Consensus 417 ~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~v~~~~~g~i~vd~~-----l~Ts~p~IyAaGDv~~~~-~ 490 (517)
T PRK15317 417 GDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGTVELNRRGEIIVDAR-----GATSVPGVFAAGDCTTVP-Y 490 (517)
T ss_pred CCcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchHHhhheeeCCCCcEEECcC-----CCCCCCCEEECccccCCC-C
Confidence 1 0 011244554 88999998 999999999999999876 5
Q ss_pred hhHHHHHHHHHHHHHHHHhhC
Q psy5231 128 DKQLLALGSGCMAALDAQRYL 148 (148)
Q Consensus 128 ~~~~~A~~~G~~aA~~i~~~l 148 (148)
+++..|+++|..||.++.+||
T Consensus 491 k~~~~A~~eG~~Aa~~~~~~l 511 (517)
T PRK15317 491 KQIIIAMGEGAKAALSAFDYL 511 (517)
T ss_pred CEEEEhhhhHHHHHHHHHHHH
Confidence 789999999999999999875
No 8
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.86 E-value=2.2e-21 Score=157.56 Aligned_cols=130 Identities=31% Similarity=0.494 Sum_probs=101.9
Q ss_pred hhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhc-CCcEEEcCceEEEEecC
Q psy5231 5 FGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNE-GKIDIKLKHIVHKIIGN 83 (148)
Q Consensus 5 ~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~-~~v~i~~~~~v~~i~~~ 83 (148)
.+..+.++++ +|||||++|+|+|..|+.++++||++++.+.+..+..+ .+.|++ .||++++++.+.++.++
T Consensus 346 ~~~~~~~k~V----vViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~~~~l----~~~l~~~~gV~i~~~~~v~~i~~~ 417 (515)
T TIGR03140 346 DGPFFKGKDV----AVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKADKVL----QDKLKSLPNVDILTSAQTTEIVGD 417 (515)
T ss_pred ChhhcCCCEE----EEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCChhHHH----HHHHhcCCCCEEEECCeeEEEEcC
Confidence 3444567777 99999999999999999999999999998877543333 333434 69999999888777543
Q ss_pred C-e----------------------------------eecceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccc
Q psy5231 84 N-T----------------------------------VTGQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFI 127 (148)
Q Consensus 84 ~-~----------------------------------~~~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~ 127 (148)
+ . +...++++ .|+|.+|++ ++|+.|+|||+|||+..+ +
T Consensus 418 ~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~~~~~~~G~I~vd~~-----~~Ts~p~IyAaGDv~~~~-~ 491 (515)
T TIGR03140 418 GDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDAVELNRRGEIVIDER-----GRTSVPGIFAAGDVTTVP-Y 491 (515)
T ss_pred CCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhhhcccCCCCeEEECCC-----CCCCCCCEEEcccccCCc-c
Confidence 1 0 01113444 388999998 999999999999999866 4
Q ss_pred hhHHHHHHHHHHHHHHHHhhC
Q psy5231 128 DKQLLALGSGCMAALDAQRYL 148 (148)
Q Consensus 128 ~~~~~A~~~G~~aA~~i~~~l 148 (148)
+++..|+++|..||.+|.+||
T Consensus 492 ~~~~~A~~~G~~Aa~~i~~~~ 512 (515)
T TIGR03140 492 KQIIIAMGEGAKAALSAFDYL 512 (515)
T ss_pred ceEEEEEccHHHHHHHHHHHH
Confidence 678899999999999999986
No 9
>PLN02507 glutathione reductase
Probab=99.86 E-value=1.4e-20 Score=152.46 Aligned_cols=124 Identities=19% Similarity=0.198 Sum_probs=102.5
Q ss_pred cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC--chHHHHHHHHhHHhcCCcEEEcCceEEEEecCC--e-----
Q psy5231 15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR--CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN--T----- 85 (148)
Q Consensus 15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~--~----- 85 (148)
+++++|||||.+|+|+|..|+++|++||++++.+.+. .+++..+.+.+.|++.||+++++++++++..++ .
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~ 282 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITD 282 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEEC
Confidence 4555999999999999999999999999999987642 256777888888888999999999998886421 0
Q ss_pred ---------------------e----ecceeecC-CeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHH
Q psy5231 86 ---------------------V----TGQLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCM 139 (148)
Q Consensus 86 ---------------------~----~~~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~ 139 (148)
+ ..+++++. |+|.||++ ++|+.|+|||+|||++.+ .....|..+|+.
T Consensus 283 ~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~-----~~Ts~p~IyAiGDv~~~~--~l~~~A~~qg~~ 355 (499)
T PLN02507 283 HGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEY-----SRTNIPSIWAIGDVTNRI--NLTPVALMEGTC 355 (499)
T ss_pred CCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCC-----CcCCCCCEEEeeEcCCCC--ccHHHHHHHHHH
Confidence 0 01345654 88999999 999999999999999866 578899999999
Q ss_pred HHHHHH
Q psy5231 140 AALDAQ 145 (148)
Q Consensus 140 aA~~i~ 145 (148)
||.||.
T Consensus 356 aa~ni~ 361 (499)
T PLN02507 356 FAKTVF 361 (499)
T ss_pred HHHHHc
Confidence 999985
No 10
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.86 E-value=1.4e-20 Score=151.93 Aligned_cols=125 Identities=21% Similarity=0.181 Sum_probs=102.1
Q ss_pred ccceEEEEcCchHHHHHHHHHhhc---CCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecC--C--
Q psy5231 14 VIIFTDVIGGGNTAVEEALYLSNI---AKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGN--N-- 84 (148)
Q Consensus 14 v~~~v~ViGgG~~g~e~A~~l~~~---g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~--~-- 84 (148)
.+++++|||||++|+|+|..++.+ |.+|||+++.+.+.. ++++.+.+++.|++.||++++++.++++..+ .
T Consensus 186 ~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~ 265 (486)
T TIGR01423 186 PPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTLRKELTKQLRANGINIMTNENPAKVTLNADGSK 265 (486)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceE
Confidence 345669999999999999888765 999999999877533 5777888888898999999999988888632 1
Q ss_pred -------e-------------------ee---cceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHH
Q psy5231 85 -------T-------------------VT---GQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLAL 134 (148)
Q Consensus 85 -------~-------------------~~---~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~ 134 (148)
. +. .+++++ +|+|.||++ ++|++|+|||+|||++.+ ..+..|.
T Consensus 266 ~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~-----l~Ts~~~IyA~GDv~~~~--~l~~~A~ 338 (486)
T TIGR01423 266 HVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEF-----SRTNVPNIYAIGDVTDRV--MLTPVAI 338 (486)
T ss_pred EEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCCC-----CcCCCCCEEEeeecCCCc--ccHHHHH
Confidence 0 00 134555 488999999 999999999999999876 5888999
Q ss_pred HHHHHHHHHHH
Q psy5231 135 GSGCMAALDAQ 145 (148)
Q Consensus 135 ~~G~~aA~~i~ 145 (148)
.+|+.||.+|.
T Consensus 339 ~qG~~aa~ni~ 349 (486)
T TIGR01423 339 NEGAAFVDTVF 349 (486)
T ss_pred HHHHHHHHHHh
Confidence 99999999985
No 11
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.85 E-value=1.8e-20 Score=150.26 Aligned_cols=124 Identities=21% Similarity=0.275 Sum_probs=102.5
Q ss_pred cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe-------
Q psy5231 15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT------- 85 (148)
Q Consensus 15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~------- 85 (148)
+++++|||||++|+|+|..|+++|.+||++++.+.+.. ++++.+.+.+.|++.||++++++.+.++..++.
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~ 254 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLK 254 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEEC
Confidence 45559999999999999999999999999999887643 567778888888889999999999988763211
Q ss_pred ----------------------e---ecceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHH
Q psy5231 86 ----------------------V---TGQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCM 139 (148)
Q Consensus 86 ----------------------~---~~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~ 139 (148)
+ ..++.++ .|++.+|++ ++|+.|+|||+|||++.+ .....|..+|+.
T Consensus 255 ~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~-----~~t~~~~IyAiGD~~~~~--~~~~~A~~~g~~ 327 (461)
T PRK05249 255 SGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNEN-----YQTAVPHIYAVGDVIGFP--SLASASMDQGRI 327 (461)
T ss_pred CCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCC-----cccCCCCEEEeeecCCCc--ccHhHHHHHHHH
Confidence 0 0134454 378999998 999999999999999876 578899999999
Q ss_pred HHHHHH
Q psy5231 140 AALDAQ 145 (148)
Q Consensus 140 aA~~i~ 145 (148)
||.+|.
T Consensus 328 aa~~i~ 333 (461)
T PRK05249 328 AAQHAV 333 (461)
T ss_pred HHHHHc
Confidence 999985
No 12
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.85 E-value=4e-20 Score=147.84 Aligned_cols=124 Identities=21% Similarity=0.193 Sum_probs=101.8
Q ss_pred cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCC--e-----
Q psy5231 15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN--T----- 85 (148)
Q Consensus 15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~--~----- 85 (148)
+++++|||||.+|+|+|..|+++|.+|+++++.+.+.. +++..+.+.+.|++.||++++++++.++..++ .
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~ 245 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLS 245 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEc
Confidence 45559999999999999999999999999999876532 46677778888888999999999888876321 0
Q ss_pred ----------------------e---ecceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHH
Q psy5231 86 ----------------------V---TGQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCM 139 (148)
Q Consensus 86 ----------------------~---~~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~ 139 (148)
+ ..+++++ +|++.+|++ ++|+.|+|||+|||++.+ .....|.++|+.
T Consensus 246 ~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~-----~~Ts~~~IyA~GD~~~~~--~l~~~A~~~g~~ 318 (446)
T TIGR01424 246 HGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEY-----SRTSIPSIYAVGDVTDRI--NLTPVAIMEATC 318 (446)
T ss_pred CCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCC-----CccCCCCEEEeeccCCCc--cchhHHHHHHHH
Confidence 0 0134455 388999999 999999999999999765 588899999999
Q ss_pred HHHHHH
Q psy5231 140 AALDAQ 145 (148)
Q Consensus 140 aA~~i~ 145 (148)
||.+|.
T Consensus 319 ~a~~i~ 324 (446)
T TIGR01424 319 FANTEF 324 (446)
T ss_pred HHHHHh
Confidence 999985
No 13
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.85 E-value=1.5e-20 Score=153.89 Aligned_cols=132 Identities=31% Similarity=0.504 Sum_probs=103.4
Q ss_pred hhhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEecC
Q psy5231 4 EFGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGN 83 (148)
Q Consensus 4 ~~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~ 83 (148)
+.+..+.++++ +|||||++|+|+|..|+++|++||++++.+.+.......+++++ +.||++++++.+.++.++
T Consensus 136 ~~~~~~~g~~V----vVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~~~~~~~~~~~---~~gV~i~~~~~V~~i~~~ 208 (555)
T TIGR03143 136 CDGEFFTGMDV----FVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTCAKLIAEKVKN---HPKIEVKFNTELKEATGD 208 (555)
T ss_pred cChhhcCCCEE----EEECCCHHHHHHHHHHHccCCEEEEEEeCCccccCHHHHHHHHh---CCCcEEEeCCEEEEEEcC
Confidence 34455667777 99999999999999999999999999998876544444555543 579999999988887543
Q ss_pred Ce----------------e------------------------ecceeec-CCeEEecCCCCcccccCCCCCeEEecccC
Q psy5231 84 NT----------------V------------------------TGQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCT 122 (148)
Q Consensus 84 ~~----------------~------------------------~~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~ 122 (148)
+. + ...+.++ +|+|.+|++ ++|+.|+|||+|||+
T Consensus 209 ~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~~l~l~~~G~I~vd~~-----~~Ts~p~IyAaGDv~ 283 (555)
T TIGR03143 209 DGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKGVVELDKRGYIPTNED-----METNVPGVYAAGDLR 283 (555)
T ss_pred CcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhhhcccCCCCeEEeCCc-----cccCCCCEEEceecc
Confidence 21 0 0013344 378999988 999999999999997
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231 123 RLYFIDKQLLALGSGCMAALDAQRYL 148 (148)
Q Consensus 123 ~~~~~~~~~~A~~~G~~aA~~i~~~l 148 (148)
... ++++..|+.+|+.||.+|.+||
T Consensus 284 ~~~-~~~v~~A~~~G~~Aa~~i~~~l 308 (555)
T TIGR03143 284 PKE-LRQVVTAVADGAIAATSAERYV 308 (555)
T ss_pred CCC-cchheeHHhhHHHHHHHHHHHH
Confidence 543 3578899999999999999886
No 14
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.85 E-value=2.8e-20 Score=140.54 Aligned_cols=130 Identities=45% Similarity=0.725 Sum_probs=102.8
Q ss_pred hhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcC-CcEEEcCceEEEEecC
Q psy5231 5 FGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEG-KIDIKLKHIVHKIIGN 83 (148)
Q Consensus 5 ~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~-~v~i~~~~~v~~i~~~ 83 (148)
.+..+.++++ +|||+|++|+|+|..|++.+++|+++++.+.+...+...+.+. +. ||++++++.+.++..+
T Consensus 135 ~~~~~~~~~v----~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~~~~~~~~l~----~~~gv~~~~~~~v~~i~~~ 206 (300)
T TIGR01292 135 DGPFFKNKEV----AVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRAEKILLDRLR----KNPNIEFLWNSTVKEIVGD 206 (300)
T ss_pred ChhhcCCCEE----EEECCChHHHHHHHHHHhhcCEEEEEEeCcccCcCHHHHHHHH----hCCCeEEEeccEEEEEEcc
Confidence 3345567777 9999999999999999999999999999887765555555554 45 9999999888887643
Q ss_pred Ce----------------------------------eecceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccch
Q psy5231 84 NT----------------------------------VTGQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFID 128 (148)
Q Consensus 84 ~~----------------------------------~~~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~ 128 (148)
+. +...+.++ +|++.+|++ ++|+.|+||++|||+... ++
T Consensus 207 ~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~~~~~~~g~i~v~~~-----~~t~~~~vya~GD~~~~~-~~ 280 (300)
T TIGR01292 207 NKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGLLELDEGGYIVTDEG-----MRTSVPGVFAAGDVRDKG-YR 280 (300)
T ss_pred CcEEEEEEEecCCCceEEEEccEEEEeeCCCCChHHHHHhheecCCCcEEECCC-----CccCCCCEEEeecccCcc-hh
Confidence 20 00112344 378999998 999999999999999733 36
Q ss_pred hHHHHHHHHHHHHHHHHhhC
Q psy5231 129 KQLLALGSGCMAALDAQRYL 148 (148)
Q Consensus 129 ~~~~A~~~G~~aA~~i~~~l 148 (148)
++..|+.+|+.||.+|.++|
T Consensus 281 ~~~~A~~~g~~aa~~i~~~~ 300 (300)
T TIGR01292 281 QAVTAAGDGCIAALSAERYL 300 (300)
T ss_pred hhhhhhhhHHHHHHHHHhhC
Confidence 88999999999999999987
No 15
>PRK14727 putative mercuric reductase; Provisional
Probab=99.85 E-value=3.3e-20 Score=149.58 Aligned_cols=125 Identities=17% Similarity=0.212 Sum_probs=101.6
Q ss_pred ccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC-chHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe-------
Q psy5231 14 VIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR-CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT------- 85 (148)
Q Consensus 14 v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~-~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~------- 85 (148)
.+++++|||+|++|+|+|..|+++|++||++++...+. .+++..+.+++.|++.||+++++++++++..++.
T Consensus 187 ~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~ 266 (479)
T PRK14727 187 LPASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFREDPLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTG 266 (479)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCCcchHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEc
Confidence 45666999999999999999999999999999854333 2566777888888889999999999988753211
Q ss_pred ---------------------e-e--cceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHHH
Q psy5231 86 ---------------------V-T--GQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMA 140 (148)
Q Consensus 86 ---------------------~-~--~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~a 140 (148)
+ . .+++++ +|+|.||++ ++|+.|+|||+|||+..+ ..+..|..+|+.|
T Consensus 267 ~g~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~-----~~Ts~~~IyA~GD~~~~~--~~~~~A~~~G~~a 339 (479)
T PRK14727 267 HGELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPA-----METSAPDIYAAGDCSDLP--QFVYVAAAAGSRA 339 (479)
T ss_pred CCeEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCC-----eecCCCCEEEeeecCCcc--hhhhHHHHHHHHH
Confidence 0 0 134555 388999999 999999999999999876 5788999999999
Q ss_pred HHHHH
Q psy5231 141 ALDAQ 145 (148)
Q Consensus 141 A~~i~ 145 (148)
|.+|.
T Consensus 340 a~~i~ 344 (479)
T PRK14727 340 GINMT 344 (479)
T ss_pred HHHHc
Confidence 99985
No 16
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.85 E-value=3.7e-20 Score=148.54 Aligned_cols=125 Identities=21% Similarity=0.249 Sum_probs=102.0
Q ss_pred cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCC--------
Q psy5231 15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN-------- 84 (148)
Q Consensus 15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~-------- 84 (148)
+++++|||+|.+|+|+|..|+++|.+||++++.+++.. +++....+++.|++.||++++++++.++..++
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~ 245 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVE 245 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEE
Confidence 45569999999999999999999999999999876642 56677778888888999999999888775321
Q ss_pred -----e-------------------e-e--cceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHH
Q psy5231 85 -----T-------------------V-T--GQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGS 136 (148)
Q Consensus 85 -----~-------------------~-~--~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~ 136 (148)
. + . .+++++ .|++.+|++ ++|+.|+|||+|||++.+ .+...|..+
T Consensus 246 ~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~-----~~Ts~~~VyAiGD~~~~~--~~~~~A~~~ 318 (463)
T TIGR02053 246 KPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDET-----LRTSNPGIYAAGDVTGGL--QLEYVAAKE 318 (463)
T ss_pred eCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCC-----ccCCCCCEEEeeecCCCc--ccHhHHHHH
Confidence 0 0 0 123444 378999988 999999999999999876 688999999
Q ss_pred HHHHHHHHHh
Q psy5231 137 GCMAALDAQR 146 (148)
Q Consensus 137 G~~aA~~i~~ 146 (148)
|+.||.+|..
T Consensus 319 g~~aa~ni~~ 328 (463)
T TIGR02053 319 GVVAAENALG 328 (463)
T ss_pred HHHHHHHhcC
Confidence 9999999864
No 17
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.85 E-value=3.6e-20 Score=148.85 Aligned_cols=126 Identities=17% Similarity=0.208 Sum_probs=103.4
Q ss_pred cccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCC--e---
Q psy5231 13 PVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN--T--- 85 (148)
Q Consensus 13 ~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~--~--- 85 (148)
..+++++|||+|.+|+|+|..|+++|++||++++.+.+.. +++..+.+.+.|++.||++++++++.++..+. .
T Consensus 175 ~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~ 254 (466)
T PRK07845 175 ELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVT 254 (466)
T ss_pred ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEE
Confidence 3455669999999999999999999999999999876643 56677778888888999999999888875321 0
Q ss_pred -----------------------e----ecceeecC-CeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHH
Q psy5231 86 -----------------------V----TGQLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSG 137 (148)
Q Consensus 86 -----------------------~----~~~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G 137 (148)
+ ..+++++. |+|.+|++ ++|+.|+|||+|||++.+ +++..|..+|
T Consensus 255 ~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~-----~~Ts~~~IyA~GD~~~~~--~l~~~A~~~g 327 (466)
T PRK07845 255 LTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRV-----SRTSVPGIYAAGDCTGVL--PLASVAAMQG 327 (466)
T ss_pred ECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCC-----cccCCCCEEEEeeccCCc--cchhHHHHHH
Confidence 0 01355654 88999998 999999999999999875 6899999999
Q ss_pred HHHHHHHH
Q psy5231 138 CMAALDAQ 145 (148)
Q Consensus 138 ~~aA~~i~ 145 (148)
..||.++.
T Consensus 328 ~~aa~~i~ 335 (466)
T PRK07845 328 RIAMYHAL 335 (466)
T ss_pred HHHHHHHc
Confidence 99999885
No 18
>PRK13748 putative mercuric reductase; Provisional
Probab=99.85 E-value=3.2e-20 Score=151.95 Aligned_cols=124 Identities=17% Similarity=0.209 Sum_probs=101.8
Q ss_pred cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC-chHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe--------
Q psy5231 15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR-CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT-------- 85 (148)
Q Consensus 15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~-~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~-------- 85 (148)
+++++|||||++|+|+|..|+++|++||++++..-+. .++++.+.+++.|++.||++++++.+.++..++.
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~ 349 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGH 349 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecC
Confidence 4555999999999999999999999999999864333 3567778888888899999999999988753210
Q ss_pred --------------------e---ecceeecC-CeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHHHH
Q psy5231 86 --------------------V---TGQLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAA 141 (148)
Q Consensus 86 --------------------~---~~~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA 141 (148)
+ ..++++++ |+|.||++ ++|+.|+|||+|||++.+ ..+..|..+|+.||
T Consensus 350 ~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~-----~~Ts~~~IyA~GD~~~~~--~~~~~A~~~g~~aa 422 (561)
T PRK13748 350 GELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQG-----MRTSVPHIYAAGDCTDQP--QFVYVAAAAGTRAA 422 (561)
T ss_pred CeEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCC-----cccCCCCEEEeeecCCCc--cchhHHHHHHHHHH
Confidence 0 01345554 78999999 999999999999999876 57889999999999
Q ss_pred HHHH
Q psy5231 142 LDAQ 145 (148)
Q Consensus 142 ~~i~ 145 (148)
.+|.
T Consensus 423 ~~i~ 426 (561)
T PRK13748 423 INMT 426 (561)
T ss_pred HHHc
Confidence 9985
No 19
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.85 E-value=3.9e-20 Score=148.58 Aligned_cols=125 Identities=17% Similarity=0.141 Sum_probs=102.0
Q ss_pred ccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecC--------
Q psy5231 14 VIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGN-------- 83 (148)
Q Consensus 14 v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~-------- 83 (148)
.+++++|||||.+|+|+|..|+++|.+||++++.+++.. +++..+.+++.|++.||++++++.+.++.++
T Consensus 171 ~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~ 250 (466)
T PRK07818 171 LPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTV 250 (466)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEE
Confidence 456669999999999999999999999999999876533 5667778888888899999999988877532
Q ss_pred ----C---e------------------e---ecceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHH
Q psy5231 84 ----N---T------------------V---TGQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLAL 134 (148)
Q Consensus 84 ----~---~------------------~---~~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~ 134 (148)
+ . + ..++.++ +|++.+|++ ++|+.|+|||+|||++.+ +....|.
T Consensus 251 ~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~-----~~Ts~p~IyAiGD~~~~~--~l~~~A~ 323 (466)
T PRK07818 251 SKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDY-----MRTNVPHIYAIGDVTAKL--QLAHVAE 323 (466)
T ss_pred EecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCC-----cccCCCCEEEEeecCCCc--ccHhHHH
Confidence 1 0 0 0123444 478999999 999999999999998765 6889999
Q ss_pred HHHHHHHHHHH
Q psy5231 135 GSGCMAALDAQ 145 (148)
Q Consensus 135 ~~G~~aA~~i~ 145 (148)
.+|+.||.+|.
T Consensus 324 ~~g~~aa~~i~ 334 (466)
T PRK07818 324 AQGVVAAETIA 334 (466)
T ss_pred HHHHHHHHHHc
Confidence 99999999985
No 20
>PRK06116 glutathione reductase; Validated
Probab=99.85 E-value=4.7e-20 Score=147.47 Aligned_cols=125 Identities=18% Similarity=0.254 Sum_probs=102.4
Q ss_pred ccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC--chHHHHHHHHhHHhcCCcEEEcCceEEEEecC--C-e---
Q psy5231 14 VIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR--CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGN--N-T--- 85 (148)
Q Consensus 14 v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~--~-~--- 85 (148)
.+++++|||||++|+|+|..|+++|.+||++++.+.+. .+++..+.+.+.|++.||++++++++.++..+ + .
T Consensus 166 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~ 245 (450)
T PRK06116 166 LPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLT 245 (450)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEE
Confidence 34555999999999999999999999999999987653 25667778888888899999999999888642 1 1
Q ss_pred ------------------------e---ecceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHH
Q psy5231 86 ------------------------V---TGQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSG 137 (148)
Q Consensus 86 ------------------------~---~~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G 137 (148)
+ ..+++++ +|++.+|++ ++|+.|+|||+|||++.+ +....|+.+|
T Consensus 246 ~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~-----~~Ts~~~IyA~GD~~~~~--~~~~~A~~~g 318 (450)
T PRK06116 246 LEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEY-----QNTNVPGIYAVGDVTGRV--ELTPVAIAAG 318 (450)
T ss_pred EcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCC-----CCcCCCCEEEEeecCCCc--CcHHHHHHHH
Confidence 0 0134455 488999998 999999999999998765 5788999999
Q ss_pred HHHHHHHH
Q psy5231 138 CMAALDAQ 145 (148)
Q Consensus 138 ~~aA~~i~ 145 (148)
+.||.+|.
T Consensus 319 ~~aa~~i~ 326 (450)
T PRK06116 319 RRLSERLF 326 (450)
T ss_pred HHHHHHHh
Confidence 99999985
No 21
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.84 E-value=5.6e-20 Score=147.98 Aligned_cols=125 Identities=16% Similarity=0.222 Sum_probs=100.7
Q ss_pred cccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCC------
Q psy5231 13 PVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN------ 84 (148)
Q Consensus 13 ~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~------ 84 (148)
..+++++|||||++|+|+|..|+++|.+||++++.+.+.. ++++.+.+.+.|++. +++++++.+.+++.++
T Consensus 172 ~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~~~v~ 250 (471)
T PRK06467 172 EVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDGIYVT 250 (471)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCEEEEE
Confidence 3456669999999999999999999999999999877643 566777777778777 9999998887764211
Q ss_pred ----------e-----------------e---ecceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHH
Q psy5231 85 ----------T-----------------V---TGQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLA 133 (148)
Q Consensus 85 ----------~-----------------~---~~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A 133 (148)
. + ..+++++ +|+|.||++ ++|+.|+|||+|||++.+ .....|
T Consensus 251 ~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~-----~~t~~p~VyAiGDv~~~~--~la~~A 323 (471)
T PRK06467 251 MEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQ-----CRTNVPHIFAIGDIVGQP--MLAHKG 323 (471)
T ss_pred EEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCC-----cccCCCCEEEehhhcCCc--ccHHHH
Confidence 0 0 0134555 488999999 999999999999998766 578999
Q ss_pred HHHHHHHHHHHH
Q psy5231 134 LGSGCMAALDAQ 145 (148)
Q Consensus 134 ~~~G~~aA~~i~ 145 (148)
..+|+.||.+|.
T Consensus 324 ~~eG~~aa~~i~ 335 (471)
T PRK06467 324 VHEGHVAAEVIA 335 (471)
T ss_pred HHHHHHHHHHHc
Confidence 999999999985
No 22
>PRK06370 mercuric reductase; Validated
Probab=99.84 E-value=7.9e-20 Score=146.71 Aligned_cols=126 Identities=19% Similarity=0.271 Sum_probs=102.2
Q ss_pred cccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCC------
Q psy5231 13 PVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN------ 84 (148)
Q Consensus 13 ~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~------ 84 (148)
..+++++|||||++|+|+|..|+++|.+|+++++.+.+.. +++..+.+.+.|++.||++++++++.++..++
T Consensus 169 ~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~ 248 (463)
T PRK06370 169 ELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVG 248 (463)
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEE
Confidence 3455669999999999999999999999999999877643 45667777778888999999999888876421
Q ss_pred ------e--------------------e---ecceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHH
Q psy5231 85 ------T--------------------V---TGQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLAL 134 (148)
Q Consensus 85 ------~--------------------~---~~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~ 134 (148)
. + ..+++++ +|++.+|++ ++|+.|+|||+|||++.+ .....|.
T Consensus 249 ~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~-----l~t~~~~IyAiGD~~~~~--~~~~~A~ 321 (463)
T PRK06370 249 LDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQ-----LRTTNPGIYAAGDCNGRG--AFTHTAY 321 (463)
T ss_pred EEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcC-----CcCCCCCEEEeeecCCCc--ccHHHHH
Confidence 0 0 0123444 378999999 999999999999998775 6788999
Q ss_pred HHHHHHHHHHH
Q psy5231 135 GSGCMAALDAQ 145 (148)
Q Consensus 135 ~~G~~aA~~i~ 145 (148)
.+|+.||.||.
T Consensus 322 ~~g~~aa~ni~ 332 (463)
T PRK06370 322 NDARIVAANLL 332 (463)
T ss_pred HHHHHHHHHHh
Confidence 99999999986
No 23
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.84 E-value=8.4e-20 Score=145.70 Aligned_cols=124 Identities=18% Similarity=0.226 Sum_probs=102.5
Q ss_pred cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe-------
Q psy5231 15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT------- 85 (148)
Q Consensus 15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~------- 85 (148)
+++++|||+|.+|+|+|..|+++|.+||++++.+.+.. +++..+.+.+.|++.||++++++++.++..++.
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~ 237 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSE 237 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEc
Confidence 45559999999999999999999999999999876643 566777788888889999999999988864311
Q ss_pred ---------------------e---ecceeecC-CeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHHH
Q psy5231 86 ---------------------V---TGQLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMA 140 (148)
Q Consensus 86 ---------------------~---~~~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~a 140 (148)
+ ..+++++. |+|.+|++ ++|+.|+|||+|||++.+ .....|..+|+.+
T Consensus 238 ~g~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~-----~~Ts~~~IyA~GD~~~~~--~~~~~a~~~~~~~ 310 (441)
T PRK08010 238 HAQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKY-----LHTTADNIWAMGDVTGGL--QFTYISLDDYRIV 310 (441)
T ss_pred CCeEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCC-----cccCCCCEEEeeecCCCc--cchhHHHHHHHHH
Confidence 0 01355654 88999999 999999999999999876 6788999999999
Q ss_pred HHHHH
Q psy5231 141 ALDAQ 145 (148)
Q Consensus 141 A~~i~ 145 (148)
+.++.
T Consensus 311 ~~~~~ 315 (441)
T PRK08010 311 RDELL 315 (441)
T ss_pred HHHHc
Confidence 99885
No 24
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.84 E-value=8.5e-20 Score=146.39 Aligned_cols=125 Identities=18% Similarity=0.163 Sum_probs=101.7
Q ss_pred cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCC--------
Q psy5231 15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN-------- 84 (148)
Q Consensus 15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~-------- 84 (148)
+++++|||||++|+|+|..|+++|.+||++++.+.+.. +++..+.+.+.|++.||++++++++.++..++
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~ 251 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLE 251 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEE
Confidence 45569999999999999999999999999999877532 46677778888888999999999888875421
Q ss_pred -----e-------------------e---ecceeecCCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHH
Q psy5231 85 -----T-------------------V---TGQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSG 137 (148)
Q Consensus 85 -----~-------------------~---~~~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G 137 (148)
. + ..++.+++|++.+|++ ++|+.|+|||+|||+..+ +....|..+|
T Consensus 252 ~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~~g~i~vd~~-----~~t~~~~VyAiGD~~~~~--~~~~~A~~~g 324 (462)
T PRK06416 252 DGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTDRGFIEVDEQ-----LRTNVPNIYAIGDIVGGP--MLAHKASAEG 324 (462)
T ss_pred eCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeecCCEEeECCC-----CccCCCCEEEeeecCCCc--chHHHHHHHH
Confidence 1 0 0123344678999998 999999999999999765 5889999999
Q ss_pred HHHHHHHHh
Q psy5231 138 CMAALDAQR 146 (148)
Q Consensus 138 ~~aA~~i~~ 146 (148)
+.||.+|..
T Consensus 325 ~~aa~ni~~ 333 (462)
T PRK06416 325 IIAAEAIAG 333 (462)
T ss_pred HHHHHHHcC
Confidence 999999863
No 25
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.84 E-value=9.9e-20 Score=146.34 Aligned_cols=125 Identities=15% Similarity=0.090 Sum_probs=99.5
Q ss_pred ccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCC-------
Q psy5231 14 VIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN------- 84 (148)
Q Consensus 14 v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~------- 84 (148)
.+++++|||||++|+|+|..|+++|++||++++.+++.. +++..+.+++.|++.||++++++.+.++..++
T Consensus 173 ~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~ 252 (466)
T PRK06115 173 VPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTL 252 (466)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEE
Confidence 355669999999999999999999999999999877532 45677778888888999999998887775321
Q ss_pred --------e-------------------e-e--cceeecCCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHH
Q psy5231 85 --------T-------------------V-T--GQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLAL 134 (148)
Q Consensus 85 --------~-------------------~-~--~~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~ 134 (148)
. + . .++.++.+.+.+|++ ++|+.|+|||+|||++.+ .....|.
T Consensus 253 ~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G~~vd~~-----~~Ts~~~IyA~GD~~~~~--~la~~A~ 325 (466)
T PRK06115 253 EPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGMLANDH-----HRTSVPGVWVIGDVTSGP--MLAHKAE 325 (466)
T ss_pred EEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCCEEECCC-----eecCCCCEEEeeecCCCc--ccHHHHH
Confidence 0 0 0 023344433667888 999999999999999876 5788999
Q ss_pred HHHHHHHHHHH
Q psy5231 135 GSGCMAALDAQ 145 (148)
Q Consensus 135 ~~G~~aA~~i~ 145 (148)
.+|+.||.+|.
T Consensus 326 ~~g~~aa~~i~ 336 (466)
T PRK06115 326 DEAVACIERIA 336 (466)
T ss_pred HHHHHHHHHHc
Confidence 99999999985
No 26
>PRK14694 putative mercuric reductase; Provisional
Probab=99.84 E-value=1.1e-19 Score=146.00 Aligned_cols=124 Identities=19% Similarity=0.213 Sum_probs=100.5
Q ss_pred cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC-chHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe--------
Q psy5231 15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR-CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT-------- 85 (148)
Q Consensus 15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~-~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~-------- 85 (148)
+++++|||+|++|+|+|..|+++|.+||++++...++ .++++.+.+++.|++.||++++++.+.++..++.
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~ 257 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQEDPAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNA 257 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCCCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECC
Confidence 3455999999999999999999999999998754333 2566778888888899999999999988764321
Q ss_pred -------------------ee----cceeecCCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHHHHH
Q psy5231 86 -------------------VT----GQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAAL 142 (148)
Q Consensus 86 -------------------~~----~~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~ 142 (148)
+. .+++.++|++.+|++ ++|+.|+|||+|||++.+ ..+..|..+|+.||.
T Consensus 258 ~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd~~-----~~Ts~~~IyA~GD~~~~~--~~~~~A~~~G~~aa~ 330 (468)
T PRK14694 258 GTLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDEH-----LQTTVSGIYAAGDCTDQP--QFVYVAAAGGSRAAI 330 (468)
T ss_pred CEEEeCEEEEccCCCCCcCCCCchhcCcccCCCeEeeCCC-----cccCCCCEEEEeecCCCc--ccHHHHHHHHHHHHH
Confidence 00 123334588999999 999999999999999876 588899999999999
Q ss_pred HHH
Q psy5231 143 DAQ 145 (148)
Q Consensus 143 ~i~ 145 (148)
+|.
T Consensus 331 ~i~ 333 (468)
T PRK14694 331 NMT 333 (468)
T ss_pred Hhc
Confidence 984
No 27
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.84 E-value=1.1e-19 Score=145.49 Aligned_cols=124 Identities=27% Similarity=0.319 Sum_probs=95.5
Q ss_pred cCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC--CCchHHHHHHHHhHHhcCCcEEEcCceEEEEecCC---
Q psy5231 10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK--LRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN--- 84 (148)
Q Consensus 10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~--~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~--- 84 (148)
.||+| +|||||++|+|+|..+.++|.+||+++|++. +.......+.+. +.||++++++.+.++.+++
T Consensus 271 ~gk~V----vVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~----~~GV~~~~~~~~~~i~~~~~g~ 342 (449)
T TIGR01316 271 AGKSV----VVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAE----EEGVKFHFLCQPVEIIGDEEGN 342 (449)
T ss_pred CCCeE----EEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHH----hCCCEEEeccCcEEEEEcCCCe
Confidence 45666 9999999999999999999999999998753 333333334443 6899999877666553210
Q ss_pred ------------------------------e-----------------ee--cceeec-CCeEEecCCCCcccccCCCCC
Q psy5231 85 ------------------------------T-----------------VT--GQLEMN-DGYIKTKLNKKTGYTSTNISG 114 (148)
Q Consensus 85 ------------------------------~-----------------~~--~~~~~~-~g~i~vd~~~~~~~~~t~~~~ 114 (148)
. +. .+++++ .|+|.+|+. ++|+.|+
T Consensus 343 v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~~-----~~Ts~~~ 417 (449)
T TIGR01316 343 VRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDED-----QRTSIPG 417 (449)
T ss_pred EEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCcccCCCCeEEeCCC-----CccCCCC
Confidence 0 00 124444 378889988 9999999
Q ss_pred eEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231 115 VFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148 (148)
Q Consensus 115 vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l 148 (148)
|||+|||+..+ ..+..|+++|+.||.+|++||
T Consensus 418 VfA~GD~~~g~--~~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 418 VFAGGDIILGA--ATVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred EEEecCCCCCc--HHHHHHHHHHHHHHHHHHhhC
Confidence 99999998766 688999999999999999997
No 28
>PTZ00058 glutathione reductase; Provisional
Probab=99.83 E-value=1.3e-19 Score=148.33 Aligned_cols=126 Identities=18% Similarity=0.266 Sum_probs=100.4
Q ss_pred cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCC---e----
Q psy5231 15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN---T---- 85 (148)
Q Consensus 15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~---~---- 85 (148)
+++++|||||.+|+|+|..|+++|++||++++.+++.. ++++.+.+.+.|++.||++++++.+.++.+++ .
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~ 316 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYL 316 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEE
Confidence 45559999999999999999999999999999876532 56677788888888999999999888876421 0
Q ss_pred ------------------------ee-c--ceeecCCeEEecCCCCcccccCCCCCeEEecccCccc-------------
Q psy5231 86 ------------------------VT-G--QLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLY------------- 125 (148)
Q Consensus 86 ------------------------~~-~--~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~------------- 125 (148)
+. . ++..++|+|.||++ ++|+.|+|||+|||++.+
T Consensus 317 ~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~~~~G~I~VDe~-----lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~ 391 (561)
T PTZ00058 317 SDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIKTPKGYIKVDDN-----QRTSVKHIYAVGDCCMVKKNQEIEDLNLLKL 391 (561)
T ss_pred CCCCEEEECCEEEECcCCCCCccccCccccceecCCCeEEECcC-----CccCCCCEEEeEeccCccccccccccccccc
Confidence 00 0 11223588999999 999999999999999821
Q ss_pred -------------------cchhHHHHHHHHHHHHHHHH
Q psy5231 126 -------------------FIDKQLLALGSGCMAALDAQ 145 (148)
Q Consensus 126 -------------------~~~~~~~A~~~G~~aA~~i~ 145 (148)
..+....|..+|+.||.+|.
T Consensus 392 ~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~ 430 (561)
T PTZ00058 392 YNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLF 430 (561)
T ss_pred cccccccccccccccccccCcCchHHHHHHHHHHHHHHh
Confidence 12567899999999999985
No 29
>PLN02546 glutathione reductase
Probab=99.83 E-value=9.6e-20 Score=148.99 Aligned_cols=123 Identities=18% Similarity=0.224 Sum_probs=100.3
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC--chHHHHHHHHhHHhcCCcEEEcCceEEEEecC--Ce------
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR--CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGN--NT------ 85 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~--~~------ 85 (148)
++++|||||++|+|+|..|+.+|.+||++++.+.+. .+++..+.+.+.|++.||++++++.+.++..+ +.
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~ 332 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTN 332 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEEC
Confidence 344999999999999999999999999999987653 25666777778888899999999988877531 10
Q ss_pred ----------------------e--e-cceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHH
Q psy5231 86 ----------------------V--T-GQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCM 139 (148)
Q Consensus 86 ----------------------~--~-~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~ 139 (148)
+ . .+++++ +|+|.||++ ++|++|+|||+|||++.+ .....|..+|+.
T Consensus 333 ~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~-----l~Ts~p~IYAaGDv~~~~--~l~~~A~~~g~~ 405 (558)
T PLN02546 333 KGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEY-----SRTSVPSIWAVGDVTDRI--NLTPVALMEGGA 405 (558)
T ss_pred CeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCC-----ceeCCCCEEEeeccCCCc--ccHHHHHHHHHH
Confidence 0 0 134455 488999999 999999999999999876 678899999999
Q ss_pred HHHHHH
Q psy5231 140 AALDAQ 145 (148)
Q Consensus 140 aA~~i~ 145 (148)
+|.+|.
T Consensus 406 ~a~~i~ 411 (558)
T PLN02546 406 LAKTLF 411 (558)
T ss_pred HHHHHc
Confidence 999985
No 30
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.83 E-value=1.4e-19 Score=145.12 Aligned_cols=125 Identities=18% Similarity=0.200 Sum_probs=101.1
Q ss_pred ccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe------
Q psy5231 14 VIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT------ 85 (148)
Q Consensus 14 v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~------ 85 (148)
.+++++|||||++|+|+|..|+++|.+||++++.+.+.. ++++.+.+.+.|++.||++++++.+.++..++.
T Consensus 169 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~ 248 (458)
T PRK06912 169 IPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEY 248 (458)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEE
Confidence 355669999999999999999999999999999877633 466777788888889999999998888753221
Q ss_pred ------------------------e---ecceeecCCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHH
Q psy5231 86 ------------------------V---TGQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGC 138 (148)
Q Consensus 86 ------------------------~---~~~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~ 138 (148)
+ ..++.++++.+.+|++ ++|+.|+|||+|||++.+ +....|..+|+
T Consensus 249 ~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~gi~Vd~~-----~~ts~~~VyA~GD~~~~~--~la~~A~~~g~ 321 (458)
T PRK06912 249 EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKGISVNEH-----MQTNVPHIYACGDVIGGI--QLAHVAFHEGT 321 (458)
T ss_pred CCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCCEEeCCC-----eecCCCCEEEEeecCCCc--ccHHHHHHHHH
Confidence 0 0123444444889998 999999999999999765 68889999999
Q ss_pred HHHHHHH
Q psy5231 139 MAALDAQ 145 (148)
Q Consensus 139 ~aA~~i~ 145 (148)
.||.++.
T Consensus 322 ~aa~~~~ 328 (458)
T PRK06912 322 TAALHAS 328 (458)
T ss_pred HHHHHHc
Confidence 9999985
No 31
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.83 E-value=1.3e-19 Score=145.14 Aligned_cols=124 Identities=21% Similarity=0.232 Sum_probs=101.1
Q ss_pred cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCC--------
Q psy5231 15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN-------- 84 (148)
Q Consensus 15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~-------- 84 (148)
+++++|||||++|+|+|..|+++|.+|+++++.+.+.. ++++.+.+++.|++. |++++++.+.+++.++
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~ 247 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELE 247 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEE
Confidence 34559999999999999999999999999999877643 566777788888888 9999999888775321
Q ss_pred -----e-------------------ee---cceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHH
Q psy5231 85 -----T-------------------VT---GQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGS 136 (148)
Q Consensus 85 -----~-------------------~~---~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~ 136 (148)
. +. .+++++ +|+|.+|++ ++|+.|+|||+|||++.+ ++...|..+
T Consensus 248 ~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~-----~~ts~~~IyA~GD~~~~~--~~~~~A~~q 320 (460)
T PRK06292 248 KGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEH-----TQTSVPGIYAAGDVNGKP--PLLHEAADE 320 (460)
T ss_pred cCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCC-----cccCCCCEEEEEecCCCc--cchhHHHHH
Confidence 0 00 134455 488999999 999999999999999876 578999999
Q ss_pred HHHHHHHHHh
Q psy5231 137 GCMAALDAQR 146 (148)
Q Consensus 137 G~~aA~~i~~ 146 (148)
|+.||.+|..
T Consensus 321 g~~aa~~i~~ 330 (460)
T PRK06292 321 GRIAAENAAG 330 (460)
T ss_pred HHHHHHHhcC
Confidence 9999999864
No 32
>PRK12831 putative oxidoreductase; Provisional
Probab=99.83 E-value=1.8e-19 Score=144.78 Aligned_cols=126 Identities=25% Similarity=0.327 Sum_probs=95.7
Q ss_pred hcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC--CCchHHHHHHHHhHHhcCCcEEEcCceEEEEecCC--
Q psy5231 9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK--LRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN-- 84 (148)
Q Consensus 9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~--~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~-- 84 (148)
..||+| +|||||++|+|+|..|.++|.+||+++|++. ++......+++. +.||++++++.+.++..+.
T Consensus 279 ~~gk~V----vVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~----~eGV~i~~~~~~~~i~~~~~g 350 (464)
T PRK12831 279 KVGKKV----AVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAK----EEGVIFDLLTNPVEILGDENG 350 (464)
T ss_pred cCCCeE----EEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHH----HcCCEEEecccceEEEecCCC
Confidence 456666 9999999999999999999999999998653 333333333333 5899999877766653210
Q ss_pred -------------------------------e------------------ee--cceeecC-CeEEecCCCCcccccCCC
Q psy5231 85 -------------------------------T------------------VT--GQLEMND-GYIKTKLNKKTGYTSTNI 112 (148)
Q Consensus 85 -------------------------------~------------------~~--~~~~~~~-g~i~vd~~~~~~~~~t~~ 112 (148)
. +. .++.++. |+|.+|+.+ ++||.
T Consensus 351 ~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~----~~Ts~ 426 (464)
T PRK12831 351 WVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEET----GLTSK 426 (464)
T ss_pred eEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCC----CccCC
Confidence 0 00 1344443 778888765 89999
Q ss_pred CCeEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231 113 SGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148 (148)
Q Consensus 113 ~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l 148 (148)
|+|||+|||+.++ .++..|+++|+.||.+|++||
T Consensus 427 pgVfAaGD~~~g~--~~v~~Ai~~G~~AA~~I~~~L 460 (464)
T PRK12831 427 EGVFAGGDAVTGA--ATVILAMGAGKKAAKAIDEYL 460 (464)
T ss_pred CCEEEeCCCCCCc--hHHHHHHHHHHHHHHHHHHHh
Confidence 9999999998766 689999999999999999987
No 33
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.82 E-value=2.7e-19 Score=144.10 Aligned_cols=124 Identities=18% Similarity=0.172 Sum_probs=101.1
Q ss_pred cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCC--------
Q psy5231 15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN-------- 84 (148)
Q Consensus 15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~-------- 84 (148)
+++++|||+|++|+|+|..|+++|.+||++++.+.+.. ++++.+.+.+.|++.||++++++.+.++..++
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~ 262 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYT 262 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEE
Confidence 34559999999999999999999999999999877632 56677778888888999999998888775321
Q ss_pred -------e------------------ee---cceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHH
Q psy5231 85 -------T------------------VT---GQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALG 135 (148)
Q Consensus 85 -------~------------------~~---~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~ 135 (148)
. +. .+++++ +|++.+|+. ++|+.|+|||+|||+..+ .+...|..
T Consensus 263 ~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~-----~~Ts~~~VyA~GD~~~~~--~~~~~A~~ 335 (475)
T PRK06327 263 DADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDH-----CRTNVPNVYAIGDVVRGP--MLAHKAEE 335 (475)
T ss_pred eCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCC-----CccCCCCEEEEEeccCCc--chHHHHHH
Confidence 0 00 124455 388999998 999999999999999766 58899999
Q ss_pred HHHHHHHHHH
Q psy5231 136 SGCMAALDAQ 145 (148)
Q Consensus 136 ~G~~aA~~i~ 145 (148)
+|+.||.+|.
T Consensus 336 ~G~~aa~~i~ 345 (475)
T PRK06327 336 EGVAVAERIA 345 (475)
T ss_pred HHHHHHHHHc
Confidence 9999999985
No 34
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.82 E-value=1.7e-19 Score=143.94 Aligned_cols=126 Identities=18% Similarity=0.269 Sum_probs=99.2
Q ss_pred cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe-------
Q psy5231 15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT------- 85 (148)
Q Consensus 15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~------- 85 (148)
+++++|||||.+|+|+|..|+++|++||++++.+.+.. +++..+.+.+.|++.||+++++++++++.+...
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~v~~~~g~~ 227 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEIDAINGNEVTFKSGKV 227 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeCCEEEECCCCE
Confidence 34559999999999999999999999999999877543 566777888888889999999999988753211
Q ss_pred ------------------ee-cceeecC-CeEEecCCCCcccccCCCCCeEEecccCccc--------cchhHHHHHHHH
Q psy5231 86 ------------------VT-GQLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLY--------FIDKQLLALGSG 137 (148)
Q Consensus 86 ------------------~~-~~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~--------~~~~~~~A~~~G 137 (148)
+. .++.+++ |+|.||++ ++|+.|+|||+|||+..+ ..+....|..+|
T Consensus 228 ~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~-----~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a 302 (438)
T PRK13512 228 EHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDK-----FETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAA 302 (438)
T ss_pred EEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECCC-----cccCCCCEEEeeeeEEeeeccCCCceecccchHHHHHH
Confidence 00 1355554 88999999 999999999999998631 013455678899
Q ss_pred HHHHHHHH
Q psy5231 138 CMAALDAQ 145 (148)
Q Consensus 138 ~~aA~~i~ 145 (148)
+.+|.+|.
T Consensus 303 ~~~a~ni~ 310 (438)
T PRK13512 303 SIVAEQIA 310 (438)
T ss_pred HHHHHHhc
Confidence 99999885
No 35
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.82 E-value=4.8e-19 Score=143.00 Aligned_cols=125 Identities=19% Similarity=0.185 Sum_probs=97.2
Q ss_pred cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC-chHHHHHHHHhHHhcCCcEEEcCceEEEEecC----------
Q psy5231 15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR-CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGN---------- 83 (148)
Q Consensus 15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~-~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~---------- 83 (148)
+++++|||||++|+|+|..|+++|.+||++++..-++ .++++.+.+++.|++.||++++++.+.++...
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~ 259 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTD 259 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEecccccccCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEec
Confidence 4556999999999999999999999999999853233 25677788888888999999998876654321
Q ss_pred C----e------------------e---ecceeec--CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHH
Q psy5231 84 N----T------------------V---TGQLEMN--DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGS 136 (148)
Q Consensus 84 ~----~------------------~---~~~~~~~--~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~ 136 (148)
+ . + ..+++++ .|+|.+|++ ++|+.|+|||+|||+... ......|..+
T Consensus 260 ~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~-----~~Ts~p~IyA~GDv~~~~-~~l~~~A~~~ 333 (484)
T TIGR01438 260 STNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEE-----EQTNVPYIYAVGDILEDK-QELTPVAIQA 333 (484)
T ss_pred CCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCC-----cccCCCCEEEEEEecCCC-ccchHHHHHH
Confidence 1 1 0 0124444 278999998 999999999999998632 2467889999
Q ss_pred HHHHHHHHH
Q psy5231 137 GCMAALDAQ 145 (148)
Q Consensus 137 G~~aA~~i~ 145 (148)
|+.+|.+|.
T Consensus 334 g~~aa~~i~ 342 (484)
T TIGR01438 334 GRLLAQRLF 342 (484)
T ss_pred HHHHHHHHh
Confidence 999999986
No 36
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.82 E-value=4.7e-19 Score=141.96 Aligned_cols=123 Identities=24% Similarity=0.304 Sum_probs=98.1
Q ss_pred cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC--chHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe-------
Q psy5231 15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR--CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT------- 85 (148)
Q Consensus 15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~------- 85 (148)
+++++|||||++|+|+|..|+++|.+||++++.+.+. .++++.+.+.+.+ +.+|++++++.+.++..++.
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~~~v~v~~~ 247 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTEIA-KKKWDIRLGRNVTAVEQDGDGVTLTLD 247 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccccCHHHHHHHHHHH-hcCCEEEeCCEEEEEEEcCCeEEEEEc
Confidence 4555999999999999999999999999999987653 2456666665544 46899999998888764211
Q ss_pred ---------------------e-e---cceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHH
Q psy5231 86 ---------------------V-T---GQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCM 139 (148)
Q Consensus 86 ---------------------~-~---~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~ 139 (148)
+ . .+++++ +|++.+|++ ++|+.|+|||+|||++.+ +....|.++|+.
T Consensus 248 ~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~-----~~Ts~~~IyA~GD~~~~~--~l~~~A~~~g~~ 320 (452)
T TIGR03452 248 DGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEY-----GRTSARGVWALGDVSSPY--QLKHVANAEARV 320 (452)
T ss_pred CCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCC-----cccCCCCEEEeecccCcc--cChhHHHHHHHH
Confidence 0 0 135565 488999999 999999999999999875 577889999999
Q ss_pred HHHHHH
Q psy5231 140 AALDAQ 145 (148)
Q Consensus 140 aA~~i~ 145 (148)
||.+|.
T Consensus 321 ~a~ni~ 326 (452)
T TIGR03452 321 VKHNLL 326 (452)
T ss_pred HHHHhc
Confidence 999986
No 37
>PRK07846 mycothione reductase; Reviewed
Probab=99.81 E-value=6.2e-19 Score=141.27 Aligned_cols=123 Identities=19% Similarity=0.265 Sum_probs=97.8
Q ss_pred cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe-------
Q psy5231 15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT------- 85 (148)
Q Consensus 15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~------- 85 (148)
+++++|||||++|+|+|..|+++|.+||++++.+.+.. +++..+.+.+.+ +.++++++++++.++..++.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~~~~v~v~~~ 244 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTELA-SKRWDVRLGRNVVGVSQDGSGVTLRLD 244 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHH-hcCeEEEeCCEEEEEEEcCCEEEEEEC
Confidence 45569999999999999999999999999999877642 455555555433 46899999999888764310
Q ss_pred ---------------------e----ecceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHH
Q psy5231 86 ---------------------V----TGQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCM 139 (148)
Q Consensus 86 ---------------------~----~~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~ 139 (148)
+ ..+++++ +|++.||++ ++|+.|+|||+|||++.+ +....|..+|+.
T Consensus 245 ~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~-----~~Ts~p~IyA~GD~~~~~--~l~~~A~~~g~~ 317 (451)
T PRK07846 245 DGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEY-----QRTSAEGVFALGDVSSPY--QLKHVANHEARV 317 (451)
T ss_pred CCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCC-----cccCCCCEEEEeecCCCc--cChhHHHHHHHH
Confidence 1 0135565 488999999 999999999999999876 577889999999
Q ss_pred HHHHHH
Q psy5231 140 AALDAQ 145 (148)
Q Consensus 140 aA~~i~ 145 (148)
+|.||.
T Consensus 318 ~a~ni~ 323 (451)
T PRK07846 318 VQHNLL 323 (451)
T ss_pred HHHHHc
Confidence 999986
No 38
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=99.81 E-value=5.6e-19 Score=140.47 Aligned_cols=127 Identities=22% Similarity=0.264 Sum_probs=99.9
Q ss_pred eEEEEcCchHHHHHHHHHhhc--------------CCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEE
Q psy5231 17 FTDVIGGGNTAVEEALYLSNI--------------AKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKI 80 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~--------------g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i 80 (148)
+++|||||++|+|+|..|+.+ +.+||++++.+++.. ++...+.+++.|++.||++++++.+.++
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~v~~~~~v~~v 254 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRTKTAVKEV 254 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeEEEE
Confidence 449999999999999999863 689999999876532 4567777888888999999999999988
Q ss_pred ecCCe-----------------------ee--cceeec-CCeEEecCCCCccccc-CCCCCeEEecccCccc---cchhH
Q psy5231 81 IGNNT-----------------------VT--GQLEMN-DGYIKTKLNKKTGYTS-TNISGVFCRWRCTRLY---FIDKQ 130 (148)
Q Consensus 81 ~~~~~-----------------------~~--~~~~~~-~g~i~vd~~~~~~~~~-t~~~~vya~GD~~~~~---~~~~~ 130 (148)
.++.. +. .+++++ +|+|.||++ ++ |+.|+|||+|||+..+ .++..
T Consensus 255 ~~~~v~~~~g~~i~~d~vi~~~G~~~~~~~~~~~l~~~~~G~I~Vd~~-----l~~~~~~~IfAiGD~a~~~~~~~~~~~ 329 (424)
T PTZ00318 255 LDKEVVLKDGEVIPTGLVVWSTGVGPGPLTKQLKVDKTSRGRISVDDH-----LRVKPIPNVFALGDCAANEERPLPTLA 329 (424)
T ss_pred eCCEEEECCCCEEEccEEEEccCCCCcchhhhcCCcccCCCcEEeCCC-----cccCCCCCEEEEeccccCCCCCCCCch
Confidence 65432 00 123444 489999998 77 6999999999999742 12467
Q ss_pred HHHHHHHHHHHHHHHhhC
Q psy5231 131 LLALGSGCMAALDAQRYL 148 (148)
Q Consensus 131 ~~A~~~G~~aA~~i~~~l 148 (148)
..|..+|..+|.||.+.|
T Consensus 330 ~~A~~qg~~~A~ni~~~l 347 (424)
T PTZ00318 330 QVASQQGVYLAKEFNNEL 347 (424)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 889999999999998753
No 39
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.81 E-value=1.1e-18 Score=140.42 Aligned_cols=125 Identities=14% Similarity=0.170 Sum_probs=100.2
Q ss_pred ccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEec---CCe---
Q psy5231 14 VIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIG---NNT--- 85 (148)
Q Consensus 14 v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~---~~~--- 85 (148)
.+++++|||||++|+|+|..|+++|.+||++++.+.+.. ++.+.+.+.+.|++.||++++++.+.++.. +..
T Consensus 179 ~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~ 258 (472)
T PRK05976 179 LPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIV 258 (472)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEE
Confidence 345669999999999999999999999999999876532 466777777788889999999999888762 111
Q ss_pred ---------e------------e--c-------ceeecCCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHH
Q psy5231 86 ---------V------------T--G-------QLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALG 135 (148)
Q Consensus 86 ---------~------------~--~-------~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~ 135 (148)
+ + . ++..+.+++.+|++ ++|+.|+||++|||++.+ +....|..
T Consensus 259 ~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g~i~Vd~~-----l~ts~~~IyAiGD~~~~~--~~~~~A~~ 331 (472)
T PRK05976 259 AEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDDF-----CQTKERHIYAIGDVIGEP--QLAHVAMA 331 (472)
T ss_pred EEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceecCCEEEECCC-----cccCCCCEEEeeecCCCc--ccHHHHHH
Confidence 0 0 0 11223578999998 999999999999998765 57889999
Q ss_pred HHHHHHHHHH
Q psy5231 136 SGCMAALDAQ 145 (148)
Q Consensus 136 ~G~~aA~~i~ 145 (148)
+|+.||.+|.
T Consensus 332 ~g~~aa~~i~ 341 (472)
T PRK05976 332 EGEMAAEHIA 341 (472)
T ss_pred HHHHHHHHHc
Confidence 9999999875
No 40
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.81 E-value=1.2e-18 Score=139.08 Aligned_cols=124 Identities=19% Similarity=0.172 Sum_probs=100.2
Q ss_pred cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC--chHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe-------
Q psy5231 15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR--CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT------- 85 (148)
Q Consensus 15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~------- 85 (148)
+++++|||||++|+|+|..|++.|.+||++++.+.+. .+++..+.+.+.|++.||++++++++.++..++.
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~ 236 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTE 236 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEEC
Confidence 4555999999999999999999999999999987763 2566677777788889999999999988864321
Q ss_pred ----------e-----------e---cceeec-CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHHH
Q psy5231 86 ----------V-----------T---GQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMA 140 (148)
Q Consensus 86 ----------~-----------~---~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~a 140 (148)
+ . .++.++ .|++.+|++ ++|+.|+|||+|||++.+ .....|..+|+.+
T Consensus 237 g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~-----~~t~~~~IyaiGD~~~~~--~~~~~a~~~~~~~ 309 (438)
T PRK07251 237 DETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDY-----CQTSVPGVFAVGDVNGGP--QFTYISLDDFRIV 309 (438)
T ss_pred CeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCC-----cccCCCCEEEeeecCCCc--ccHhHHHHHHHHH
Confidence 0 0 123344 378999998 999999999999999876 5788899999999
Q ss_pred HHHHH
Q psy5231 141 ALDAQ 145 (148)
Q Consensus 141 A~~i~ 145 (148)
+.++.
T Consensus 310 ~~~~~ 314 (438)
T PRK07251 310 FGYLT 314 (438)
T ss_pred HHHHc
Confidence 87764
No 41
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.80 E-value=1.2e-18 Score=136.52 Aligned_cols=129 Identities=21% Similarity=0.226 Sum_probs=100.5
Q ss_pred hhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc---hHHHHHHHHhHHhcCCcEEEcCceEEEEecCC
Q psy5231 8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC---EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN 84 (148)
Q Consensus 8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~ 84 (148)
...++++ +|||||++|+|+|..|++.|.+|+++++.+.+.. ++...+.+.+.|++.||++++++.+.++..+.
T Consensus 138 ~~~~~~v----vViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~ 213 (377)
T PRK04965 138 LRDAQRV----LVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTD 213 (377)
T ss_pred hhcCCeE----EEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccC
Confidence 3456777 9999999999999999999999999999876532 45566777778888999999999998886532
Q ss_pred e----------------------------ee--cceeecCCeEEecCCCCcccccCCCCCeEEecccCcccc--chhHHH
Q psy5231 85 T----------------------------VT--GQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF--IDKQLL 132 (148)
Q Consensus 85 ~----------------------------~~--~~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~--~~~~~~ 132 (148)
. +. .++..+.| +.+|++ ++|+.|+|||+|||+..++ .+.+..
T Consensus 214 ~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~~g-i~vd~~-----l~ts~~~VyA~GD~a~~~~~~~~~~~~ 287 (377)
T PRK04965 214 SGIRATLDSGRSIEVDAVIAAAGLRPNTALARRAGLAVNRG-IVVDSY-----LQTSAPDIYALGDCAEINGQVLPFLQP 287 (377)
T ss_pred CEEEEEEcCCcEEECCEEEECcCCCcchHHHHHCCCCcCCC-EEECCC-----cccCCCCEEEeeecEeECCceeehHHH
Confidence 1 00 12333444 889998 9999999999999986531 235667
Q ss_pred HHHHHHHHHHHHHh
Q psy5231 133 ALGSGCMAALDAQR 146 (148)
Q Consensus 133 A~~~G~~aA~~i~~ 146 (148)
|..+|+.||.||..
T Consensus 288 a~~~g~~~a~n~~g 301 (377)
T PRK04965 288 IQLSAMALAKNLLG 301 (377)
T ss_pred HHHHHHHHHHHhcC
Confidence 88999999999853
No 42
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.80 E-value=8.8e-19 Score=139.75 Aligned_cols=124 Identities=19% Similarity=0.329 Sum_probs=99.5
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc---hHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe--------
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC---EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT-------- 85 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~-------- 85 (148)
+++|+|||++|+|+|..|++.|++|+++++.+++.. ++++.+.+.+.|++.||++++++++.++..++.
T Consensus 151 ~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~ 230 (444)
T PRK09564 151 NIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTDK 230 (444)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCC
Confidence 349999999999999999999999999998776432 466777888888889999999999998864321
Q ss_pred --------------------ee-cceeec-CCeEEecCCCCcccccCCCCCeEEecccCcccc--------chhHHHHHH
Q psy5231 86 --------------------VT-GQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF--------IDKQLLALG 135 (148)
Q Consensus 86 --------------------~~-~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~--------~~~~~~A~~ 135 (148)
+. .+++++ +|+|.||++ ++|+.|+|||+|||++.+. .+....|..
T Consensus 231 ~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~-----~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~ 305 (444)
T PRK09564 231 GEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEY-----GETSIENIYAAGDCATIYNIVSNKNVYVPLATTANK 305 (444)
T ss_pred CEEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECCC-----cccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHH
Confidence 00 134554 488999998 8999999999999987420 135678999
Q ss_pred HHHHHHHHHH
Q psy5231 136 SGCMAALDAQ 145 (148)
Q Consensus 136 ~G~~aA~~i~ 145 (148)
+|+.+|.||.
T Consensus 306 qg~~~a~ni~ 315 (444)
T PRK09564 306 LGRMVGENLA 315 (444)
T ss_pred HHHHHHHHhc
Confidence 9999999985
No 43
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.80 E-value=1.8e-18 Score=138.65 Aligned_cols=125 Identities=20% Similarity=0.206 Sum_probs=100.7
Q ss_pred cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCC--------
Q psy5231 15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN-------- 84 (148)
Q Consensus 15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~-------- 84 (148)
+++++|||||.+|+|+|..|++.|.+||++++.+.+.. ++...+.+.+.|++.||++++++.+.++..++
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~ 249 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENK 249 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEe
Confidence 45569999999999999999999999999999876532 45667777778888999999999888765321
Q ss_pred -----e-------e--------e------cceeecC-CeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHH
Q psy5231 85 -----T-------V--------T------GQLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSG 137 (148)
Q Consensus 85 -----~-------~--------~------~~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G 137 (148)
. + . .++.++. |++.+|+. ++|+.|+||++|||+..+ +....|..+|
T Consensus 250 ~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~-----l~t~~~~IyaiGD~~~~~--~~~~~A~~~g 322 (461)
T TIGR01350 250 GGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEY-----MRTNVPGIYAIGDVIGGP--MLAHVASHEG 322 (461)
T ss_pred CCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCC-----cccCCCCEEEeeecCCCc--ccHHHHHHHH
Confidence 1 0 0 0233443 78999988 999999999999999766 5889999999
Q ss_pred HHHHHHHHh
Q psy5231 138 CMAALDAQR 146 (148)
Q Consensus 138 ~~aA~~i~~ 146 (148)
+.||.+|..
T Consensus 323 ~~aa~~i~~ 331 (461)
T TIGR01350 323 IVAAENIAG 331 (461)
T ss_pred HHHHHHHcC
Confidence 999999863
No 44
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.79 E-value=2e-18 Score=136.19 Aligned_cols=126 Identities=16% Similarity=0.145 Sum_probs=98.1
Q ss_pred cCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc---hHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe-
Q psy5231 10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC---EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT- 85 (148)
Q Consensus 10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~- 85 (148)
.++++ +|||||.+|+|+|..|+++|.+||++++.+.+.. .+...+.+.+.+++.||++++++.+.++..++.
T Consensus 143 ~~~~v----vViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~ 218 (396)
T PRK09754 143 PERSV----VIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEKV 218 (396)
T ss_pred cCCeE----EEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEcCCEE
Confidence 45666 9999999999999999999999999999877632 345566677777789999999999988764221
Q ss_pred --------------------------ee--cceeecCCeEEecCCCCcccccCCCCCeEEecccCcccc-------chhH
Q psy5231 86 --------------------------VT--GQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF-------IDKQ 130 (148)
Q Consensus 86 --------------------------~~--~~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~-------~~~~ 130 (148)
+. .++.. ++.|.+|++ ++|+.|+|||+|||+..+. ..++
T Consensus 219 ~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~-~~gi~vd~~-----~~ts~~~IyA~GD~a~~~~~~g~~~~~~~~ 292 (396)
T PRK09754 219 ELTLQSGETLQADVVIYGIGISANDQLAREANLDT-ANGIVIDEA-----CRTCDPAIFAGGDVAITRLDNGALHRCESW 292 (396)
T ss_pred EEEECCCCEEECCEEEECCCCChhhHHHHhcCCCc-CCCEEECCC-----CccCCCCEEEccceEeeeCCCCCEEEECcH
Confidence 00 12222 256899999 9999999999999985321 1356
Q ss_pred HHHHHHHHHHHHHHH
Q psy5231 131 LLALGSGCMAALDAQ 145 (148)
Q Consensus 131 ~~A~~~G~~aA~~i~ 145 (148)
..|..+|+.||.||.
T Consensus 293 ~~A~~qg~~aa~ni~ 307 (396)
T PRK09754 293 ENANNQAQIAAAAML 307 (396)
T ss_pred HHHHHHHHHHHHHhc
Confidence 789999999999985
No 45
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=99.79 E-value=2e-18 Score=135.46 Aligned_cols=128 Identities=18% Similarity=0.196 Sum_probs=104.2
Q ss_pred eEEEEcCchHHHHHHHHHhhcCC-------------eEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEe
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAK-------------KVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKII 81 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~-------------~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~ 81 (148)
+++|+|||++|+|+|.+|+++.. +|+||++.+++.. ++.+++++++.|++.||++.+++.|++++
T Consensus 157 ti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~ 236 (405)
T COG1252 157 TIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVT 236 (405)
T ss_pred EEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCEEEcCCceEEEC
Confidence 45999999999999999987632 8999999988754 57788888999999999999999999998
Q ss_pred cCCe------------------------e-e--cceeecC-CeEEecCCCCcccccCCCCCeEEecccCcccc----chh
Q psy5231 82 GNNT------------------------V-T--GQLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF----IDK 129 (148)
Q Consensus 82 ~~~~------------------------~-~--~~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~----~~~ 129 (148)
++.. + . .+.+.|+ |++.||+.+ ...+.|+||++|||+..+. ++.
T Consensus 237 ~~~v~~~~g~~~I~~~tvvWaaGv~a~~~~~~l~~~e~dr~Grl~V~~~L----~~~~~~~IFa~GD~A~~~~~~p~P~t 312 (405)
T COG1252 237 PDGVTLKDGEEEIPADTVVWAAGVRASPLLKDLSGLETDRRGRLVVNPTL----QVPGHPDIFAAGDCAAVIDPRPVPPT 312 (405)
T ss_pred CCcEEEccCCeeEecCEEEEcCCCcCChhhhhcChhhhccCCCEEeCCCc----ccCCCCCeEEEeccccCCCCCCCCCh
Confidence 7643 1 1 1244564 999999995 5568999999999986542 256
Q ss_pred HHHHHHHHHHHHHHHHhhC
Q psy5231 130 QLLALGSGCMAALDAQRYL 148 (148)
Q Consensus 130 ~~~A~~~G~~aA~~i~~~l 148 (148)
...|..+|..+|.||.+.|
T Consensus 313 AQ~A~Qqg~~~a~ni~~~l 331 (405)
T COG1252 313 AQAAHQQGEYAAKNIKARL 331 (405)
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 7888999999999998764
No 46
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.78 E-value=3.1e-18 Score=136.16 Aligned_cols=127 Identities=22% Similarity=0.312 Sum_probs=100.4
Q ss_pred cCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC-C--chHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe-
Q psy5231 10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL-R--CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT- 85 (148)
Q Consensus 10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~-~--~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~- 85 (148)
.++++ +|||||++|+|+|..|++.|.+||++++.+.+ . .++...+.+.+.|++.||++++++.+.++..++.
T Consensus 136 ~~~~v----vViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~ 211 (427)
T TIGR03385 136 KVENV----VIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEERV 211 (427)
T ss_pred CCCeE----EEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCCCE
Confidence 34555 99999999999999999999999999998765 2 2456667777888889999999999988864321
Q ss_pred --------------------------ee-cceeec-CCeEEecCCCCcccccCCCCCeEEecccCcccc--------chh
Q psy5231 86 --------------------------VT-GQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF--------IDK 129 (148)
Q Consensus 86 --------------------------~~-~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~--------~~~ 129 (148)
+. .++.++ .|++.+|+. ++|+.|+|||+|||+..+. .+.
T Consensus 212 v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~-----~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~ 286 (427)
T TIGR03385 212 KVFTSGGVYQADMVILATGIKPNSELAKDSGLKLGETGAIWVNEK-----FQTSVPNIYAAGDVAESHNIITKKPAWVPL 286 (427)
T ss_pred EEEcCCCEEEeCEEEECCCccCCHHHHHhcCcccCCCCCEEECCC-----cEeCCCCEEEeeeeEEeeeccCCCceeeec
Confidence 00 134455 388999998 9999999999999986420 235
Q ss_pred HHHHHHHHHHHHHHHH
Q psy5231 130 QLLALGSGCMAALDAQ 145 (148)
Q Consensus 130 ~~~A~~~G~~aA~~i~ 145 (148)
...|..+|+.||.||.
T Consensus 287 ~~~A~~~g~~~a~ni~ 302 (427)
T TIGR03385 287 AWGANKMGRIAGENIA 302 (427)
T ss_pred hHHHHHHHHHHHHHhc
Confidence 7788999999999985
No 47
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.78 E-value=4.3e-18 Score=136.55 Aligned_cols=125 Identities=26% Similarity=0.351 Sum_probs=94.6
Q ss_pred cCCcccceEEEEcCchHHHHHHHHHhhcCC-eEEEEEeCCC--CCchHHHHHHHHhHHhcCCcEEEcCceEEEEecCC--
Q psy5231 10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAK-KVTLIHRNEK--LRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN-- 84 (148)
Q Consensus 10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~--~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~-- 84 (148)
.+++| +|||||++|+|+|..|.+.|. +||++++++. +.......+.+. +.||++++++.+.++.+++
T Consensus 272 ~g~~V----vViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~----~~GV~i~~~~~v~~i~~~~~~ 343 (457)
T PRK11749 272 VGKRV----VVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAK----EEGVEFEWLAAPVEILGDEGR 343 (457)
T ss_pred CCCeE----EEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHH----HCCCEEEecCCcEEEEecCCc
Confidence 46666 999999999999999999987 8999998653 333334334443 6899999888776664221
Q ss_pred --------------------------e--------------------e-e--cceeec-CCeEEecCCCCcccccCCCCC
Q psy5231 85 --------------------------T--------------------V-T--GQLEMN-DGYIKTKLNKKTGYTSTNISG 114 (148)
Q Consensus 85 --------------------------~--------------------~-~--~~~~~~-~g~i~vd~~~~~~~~~t~~~~ 114 (148)
. + . .++.++ .|++.+|+.. ++|+.|+
T Consensus 344 ~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~----~~Ts~~~ 419 (457)
T PRK11749 344 VTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDET----GRTSLPG 419 (457)
T ss_pred eEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhccccCccCCCCCCEEeCCCC----CccCCCC
Confidence 0 0 0 123344 3778888832 8999999
Q ss_pred eEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231 115 VFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148 (148)
Q Consensus 115 vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l 148 (148)
|||+|||+..+ +++..|+.+|+.||.+|+++|
T Consensus 420 VfA~GD~~~~~--~~~~~A~~~G~~aA~~I~~~l 451 (457)
T PRK11749 420 VFAGGDIVTGA--ATVVWAVGDGKDAAEAIHEYL 451 (457)
T ss_pred EEEeCCcCCCc--hHHHHHHHHHHHHHHHHHHHH
Confidence 99999998665 688999999999999999886
No 48
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.78 E-value=3.6e-18 Score=132.85 Aligned_cols=126 Identities=25% Similarity=0.187 Sum_probs=93.5
Q ss_pred cCCcccceEEEEcCchHHHHHHHHHhhcCCe-EEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEecCC----
Q psy5231 10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAKK-VTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN---- 84 (148)
Q Consensus 10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~-Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~---- 84 (148)
.|+++ +|||+|++|+|+|..|.+.|.+ |+++++++..... ....+.+.|+.+||++++++.+.++++++
T Consensus 171 ~g~~v----vViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~--~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~~~ 244 (352)
T PRK12770 171 EGKKV----VVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAP--AGKYEIERLIARGVEFLELVTPVRIIGEGRVEG 244 (352)
T ss_pred CCCEE----EEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCC--CCHHHHHHHHHcCCEEeeccCceeeecCCcEeE
Confidence 36677 9999999999999999998986 9999986543211 11222334557899999877655543210
Q ss_pred ---------------------------e-----------------ee---cceeecC-CeEEecCCCCcccccCCCCCeE
Q psy5231 85 ---------------------------T-----------------VT---GQLEMND-GYIKTKLNKKTGYTSTNISGVF 116 (148)
Q Consensus 85 ---------------------------~-----------------~~---~~~~~~~-g~i~vd~~~~~~~~~t~~~~vy 116 (148)
. +. .++.++. +++.+|+. ++|+.|+||
T Consensus 245 v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~i~vd~~-----~~t~~~~vy 319 (352)
T PRK12770 245 VELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEIVVDEK-----HMTSREGVF 319 (352)
T ss_pred EEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCcEeeCCC-----cccCCCCEE
Confidence 0 00 1233443 77889988 899999999
Q ss_pred EecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231 117 CRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148 (148)
Q Consensus 117 a~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l 148 (148)
++|||+..+ ..+..|+.+|+.||.+|.++|
T Consensus 320 aiGD~~~~~--~~~~~A~~~g~~aa~~i~~~l 349 (352)
T PRK12770 320 AAGDVVTGP--SKIGKAIKSGLRAAQSIHEWL 349 (352)
T ss_pred EEcccccCc--chHHHHHHHHHHHHHHHHHHH
Confidence 999998866 588999999999999999876
No 49
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.78 E-value=4.9e-18 Score=145.71 Aligned_cols=125 Identities=26% Similarity=0.321 Sum_probs=93.9
Q ss_pred cCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC--CCchHHHHHHHHhHHhcCCcEEEcCceEEEEecC--C-
Q psy5231 10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK--LRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGN--N- 84 (148)
Q Consensus 10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~--~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~--~- 84 (148)
.||+| +|||||++|+|+|..+.++|.+||+++|++. ++..+...+.+. +.|+++++.+.+.++.++ +
T Consensus 446 ~Gk~V----vVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~~e~~~a~----eeGV~~~~~~~p~~i~~d~~~~ 517 (944)
T PRK12779 446 KGKEV----FVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVEELHHAL----EEGINLAVLRAPREFIGDDHTH 517 (944)
T ss_pred CCCEE----EEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccccHHHHHHHH----HCCCEEEeCcceEEEEecCCCC
Confidence 56777 9999999999999999999999999998753 333333233332 579999887666655321 0
Q ss_pred -----------------------------e------------------e-e--cceeec-CCeEEecCCCCcccccCCCC
Q psy5231 85 -----------------------------T------------------V-T--GQLEMN-DGYIKTKLNKKTGYTSTNIS 113 (148)
Q Consensus 85 -----------------------------~------------------~-~--~~~~~~-~g~i~vd~~~~~~~~~t~~~ 113 (148)
. + . .+++++ .|.|.+|+.. ++||.|
T Consensus 518 ~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~----~~Ts~p 593 (944)
T PRK12779 518 FVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGS----QRTSIK 593 (944)
T ss_pred EEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCC----CccCCC
Confidence 0 0 0 124444 3778888654 899999
Q ss_pred CeEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231 114 GVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148 (148)
Q Consensus 114 ~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l 148 (148)
+|||+|||+.++ ..+..|+++|+.||.+|++||
T Consensus 594 gVFAaGD~~~G~--~~vv~Ai~eGr~AA~~I~~~L 626 (944)
T PRK12779 594 GVYSGGDAARGG--STAIRAAGDGQAAAKEIVGEI 626 (944)
T ss_pred CEEEEEcCCCCh--HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999776 689999999999999999986
No 50
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.78 E-value=7.5e-18 Score=139.86 Aligned_cols=124 Identities=9% Similarity=0.107 Sum_probs=97.4
Q ss_pred cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHH-hcCCcEEEcCceEEEEecCC-------
Q psy5231 15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKV-NEGKIDIKLKHIVHKIIGNN------- 84 (148)
Q Consensus 15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l-~~~~v~i~~~~~v~~i~~~~------- 84 (148)
+++++|||||.+|+|+|..|+++|++||++++.+.+.. +++..+.+.+.+ ++.||++++++.++++..++
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v 391 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVII 391 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEE
Confidence 44559999999999999999999999999999887643 556666666654 56899999998887664210
Q ss_pred ---------------------e------------------ee---cceeecCCeEEecCCCCcccccCC------CCCeE
Q psy5231 85 ---------------------T------------------VT---GQLEMNDGYIKTKLNKKTGYTSTN------ISGVF 116 (148)
Q Consensus 85 ---------------------~------------------~~---~~~~~~~g~i~vd~~~~~~~~~t~------~~~vy 116 (148)
. +. .++.+++|+|.||++ ++|+ +|+||
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~~G~I~VDe~-----lqTs~~~~~~v~~IY 466 (659)
T PTZ00153 392 GHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMKRGFVSVDEH-----LRVLREDQEVYDNIF 466 (659)
T ss_pred EEeccccccccccccccccceEEEcCEEEEEECcccCCccCCchhcCCcccCCEEeECCC-----CCcCCCCCCCCCCEE
Confidence 1 00 023344588999999 8987 69999
Q ss_pred EecccCccccchhHHHHHHHHHHHHHHHH
Q psy5231 117 CRWRCTRLYFIDKQLLALGSGCMAALDAQ 145 (148)
Q Consensus 117 a~GD~~~~~~~~~~~~A~~~G~~aA~~i~ 145 (148)
|+|||++.+ .....|..+|+.||.+|.
T Consensus 467 AiGDv~g~~--~La~~A~~qg~~aa~ni~ 493 (659)
T PTZ00153 467 CIGDANGKQ--MLAHTASHQALKVVDWIE 493 (659)
T ss_pred EEEecCCCc--cCHHHHHHHHHHHHHHHc
Confidence 999999876 578899999999999985
No 51
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.78 E-value=4.5e-18 Score=144.70 Aligned_cols=127 Identities=16% Similarity=0.138 Sum_probs=101.9
Q ss_pred cCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC---chHHHHHHHHhHHhcCCcEEEcCceEEEEecCC--
Q psy5231 10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR---CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN-- 84 (148)
Q Consensus 10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~-- 84 (148)
.++++ +|||||++|+|+|..|+++|.+|+++++.+.+. .++...+.+++.|++.||++++++.++++..++
T Consensus 144 ~~k~v----vVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~ 219 (847)
T PRK14989 144 RSKRG----AVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVE 219 (847)
T ss_pred cCCeE----EEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCC
Confidence 45555 999999999999999999999999999987753 256667778888889999999999998886421
Q ss_pred -e---------------------------ee--cceeecC-CeEEecCCCCcccccCCCCCeEEecccCcccc--chhHH
Q psy5231 85 -T---------------------------VT--GQLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF--IDKQL 131 (148)
Q Consensus 85 -~---------------------------~~--~~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~--~~~~~ 131 (148)
. +. .++++++ |+|.||++ ++|+.|+|||+|||+..++ +..+.
T Consensus 220 ~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~~-----l~Ts~p~IYAiGD~a~~~~~~~gl~~ 294 (847)
T PRK14989 220 ARKTMRFADGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDS-----CQTSDPDIYAIGECASWNNRVFGLVA 294 (847)
T ss_pred ceEEEEECCCCEEEcCEEEECCCcccCchHHhhcCccCCCCCcEEECCC-----CcCCCCCEEEeecceeEcCcccccHH
Confidence 0 11 2355554 78999999 9999999999999997642 23567
Q ss_pred HHHHHHHHHHHHHH
Q psy5231 132 LALGSGCMAALDAQ 145 (148)
Q Consensus 132 ~A~~~G~~aA~~i~ 145 (148)
.|..+|+.||.+|.
T Consensus 295 ~a~~~a~vaa~~i~ 308 (847)
T PRK14989 295 PGYKMAQVAVDHLL 308 (847)
T ss_pred HHHHHHHHHHHHhc
Confidence 88899999999885
No 52
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.78 E-value=8.6e-18 Score=136.18 Aligned_cols=124 Identities=17% Similarity=0.134 Sum_probs=92.8
Q ss_pred cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC-chHHHHHHHHhHHhcCCcEEEcCceEEEEecCC-e-------
Q psy5231 15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR-CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN-T------- 85 (148)
Q Consensus 15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~-~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~-~------- 85 (148)
+++++|||||++|+|+|..|+++|.+||++++...++ .+++..+.+++.|++.||++++++.+.++.... .
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~ 261 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLRGFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSD 261 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccccCCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECC
Confidence 4566999999999999999999999999999853333 256677788888888999999998887775321 0
Q ss_pred ---------------------e---ecceeecC-CeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHHH
Q psy5231 86 ---------------------V---TGQLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMA 140 (148)
Q Consensus 86 ---------------------~---~~~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~a 140 (148)
+ ..+++++. |++.+++ .+|+.|+|||+|||+... +..+..|..+|+.+
T Consensus 262 g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~------~~Ts~p~IyAiGDv~~~~-~~l~~~A~~~g~~a 334 (499)
T PTZ00052 262 GTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPN------DCTNIPNIFAVGDVVEGR-PELTPVAIKAGILL 334 (499)
T ss_pred CCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCC------CcCCCCCEEEEEEecCCC-cccHHHHHHHHHHH
Confidence 0 00123332 4443432 379999999999998532 25788999999999
Q ss_pred HHHHH
Q psy5231 141 ALDAQ 145 (148)
Q Consensus 141 A~~i~ 145 (148)
|.+|.
T Consensus 335 a~ni~ 339 (499)
T PTZ00052 335 ARRLF 339 (499)
T ss_pred HHHHh
Confidence 99985
No 53
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.77 E-value=6.6e-18 Score=142.61 Aligned_cols=125 Identities=27% Similarity=0.365 Sum_probs=94.4
Q ss_pred hcCCcccceEEEEcCchHHHHHHHHHhhcCCe-EEEEEeCCC--CCchHHHHHHHHhHHhcCCcEEEcCceEEEEecCC-
Q psy5231 9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAKK-VTLIHRNEK--LRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN- 84 (148)
Q Consensus 9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~-Vtlv~~~~~--~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~- 84 (148)
..||+| +|||||++|+|+|..+.++|.+ ||++++++. ++......+.+. +.||++++++.+.++..+.
T Consensus 568 ~~gk~V----vVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~~~~~----~~GV~i~~~~~~~~i~~~~~ 639 (752)
T PRK12778 568 KFGKKV----AVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEVKHAK----EEGIEFLTLHNPIEYLADEK 639 (752)
T ss_pred cCCCcE----EEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHH----HcCCEEEecCcceEEEECCC
Confidence 356777 9999999999999999999987 999998753 333333333333 6899998776555543110
Q ss_pred --------------------------------e-----------------ee---cceeecC-CeEEecCCCCcccccCC
Q psy5231 85 --------------------------------T-----------------VT---GQLEMND-GYIKTKLNKKTGYTSTN 111 (148)
Q Consensus 85 --------------------------------~-----------------~~---~~~~~~~-g~i~vd~~~~~~~~~t~ 111 (148)
. +. .++.++. |+|.+|+. ++|+
T Consensus 640 g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~-----~~Ts 714 (752)
T PRK12778 640 GWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEE-----MQSS 714 (752)
T ss_pred CEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCCC-----CCCC
Confidence 0 00 1344553 78889988 8999
Q ss_pred CCCeEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231 112 ISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148 (148)
Q Consensus 112 ~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l 148 (148)
.|+|||+|||+.++ .++..|+++|+.||.+|++||
T Consensus 715 ~~gVfA~GD~~~g~--~~vv~Av~~G~~AA~~I~~~L 749 (752)
T PRK12778 715 IPGIYAGGDIVRGG--ATVILAMGDGKRAAAAIDEYL 749 (752)
T ss_pred CCCEEEeCCccCCc--HHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999766 689999999999999999987
No 54
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.76 E-value=1.5e-17 Score=138.48 Aligned_cols=126 Identities=24% Similarity=0.321 Sum_probs=93.7
Q ss_pred hcCCcccceEEEEcCchHHHHHHHHHhhcCC-eEEEEEeCCC--CCchHHHHHHHHhHHhcCCcEEEcCceEEEEecC--
Q psy5231 9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAK-KVTLIHRNEK--LRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGN-- 83 (148)
Q Consensus 9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~--~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~-- 83 (148)
..|++| +|||||++|+|+|..+.++|. +||+++|++. ++..+...+.+. +.||++++++.+.++.++
T Consensus 321 ~~gk~V----vVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei~~a~----~eGV~i~~~~~~~~i~~~~~ 392 (652)
T PRK12814 321 HPGKKV----VVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEIEEAL----AEGVSLRELAAPVSIERSEG 392 (652)
T ss_pred cCCCeE----EEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHH----HcCCcEEeccCcEEEEecCC
Confidence 456666 999999999999999999985 6999998753 444333333333 479999887766554311
Q ss_pred --------------------------C---e-----------------ee--cceeecC-CeEEecCCCCcccccCCCCC
Q psy5231 84 --------------------------N---T-----------------VT--GQLEMND-GYIKTKLNKKTGYTSTNISG 114 (148)
Q Consensus 84 --------------------------~---~-----------------~~--~~~~~~~-g~i~vd~~~~~~~~~t~~~~ 114 (148)
+ . +. .++.++. |++.+|+.+ ++|+.|+
T Consensus 393 ~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll~~~gl~~~~~G~I~vd~~~----~~Ts~pg 468 (652)
T PRK12814 393 GLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPET----LQTSVAG 468 (652)
T ss_pred eEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcccccccCccccCCCcEeeCCCC----CcCCCCC
Confidence 0 0 00 1244443 788898754 8999999
Q ss_pred eEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231 115 VFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148 (148)
Q Consensus 115 vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l 148 (148)
|||+||++..+ .++..|+++|+.||.+|++||
T Consensus 469 VfA~GDv~~g~--~~v~~Ai~~G~~AA~~I~~~L 500 (652)
T PRK12814 469 VFAGGDCVTGA--DIAINAVEQGKRAAHAIDLFL 500 (652)
T ss_pred EEEcCCcCCCc--hHHHHHHHHHHHHHHHHHHHH
Confidence 99999998766 688999999999999999986
No 55
>KOG0405|consensus
Probab=99.75 E-value=3.9e-18 Score=129.97 Aligned_cols=127 Identities=20% Similarity=0.234 Sum_probs=105.6
Q ss_pred cccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC-Cc-hHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe-----
Q psy5231 13 PVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL-RC-EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT----- 85 (148)
Q Consensus 13 ~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~-~~-~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~----- 85 (148)
..||+++|+|+|++|+|+|..++..|.+++|+-|.+++ +. ++.+.+.+.++|+..||++|.++.+.++.....
T Consensus 187 e~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~ 266 (478)
T KOG0405|consen 187 EQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELV 266 (478)
T ss_pred hcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcchhHHHHHHHHHHhhhcceeecccccceeeeecCCCceEE
Confidence 34566699999999999999999999999999998876 33 677888899999999999999999888764321
Q ss_pred ---------------------------ee-cceeecC-CeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHH
Q psy5231 86 ---------------------------VT-GQLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGS 136 (148)
Q Consensus 86 ---------------------------~~-~~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~ 136 (148)
+. -+++++. |.|.+|++ ++|++|+||++||+++.- .....|+.+
T Consensus 267 i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeY-----q~Tnvp~I~avGDv~gk~--~LTPVAiaa 339 (478)
T KOG0405|consen 267 ITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEY-----QNTNVPSIWAVGDVTGKI--NLTPVAIAA 339 (478)
T ss_pred EEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEecc-----ccCCCCceEEeccccCcE--ecchHHHhh
Confidence 11 2567774 99999999 999999999999999875 577889999
Q ss_pred HHHHHHHHHh
Q psy5231 137 GCMAALDAQR 146 (148)
Q Consensus 137 G~~aA~~i~~ 146 (148)
|+.-|..+..
T Consensus 340 gr~la~rlF~ 349 (478)
T KOG0405|consen 340 GRKLANRLFG 349 (478)
T ss_pred hhhHHHHhhc
Confidence 9988876643
No 56
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.75 E-value=2.4e-17 Score=137.37 Aligned_cols=129 Identities=19% Similarity=0.132 Sum_probs=92.4
Q ss_pred hcCCcccceEEEEcCchHHHHHHHHHhhcCC-eEEEEEeCCC--CCchHHHHHHHHhHHhcCCcEEEcCceEEEEecC--
Q psy5231 9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAK-KVTLIHRNEK--LRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGN-- 83 (148)
Q Consensus 9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~--~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~-- 83 (148)
..||+| +|||||++|+|+|..+.+.|. +||+++|++. ++..+...+.+. +.||++++++.+.++..+
T Consensus 466 ~~gk~V----vVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~e~~~~~----~~Gv~~~~~~~~~~i~~~~~ 537 (654)
T PRK12769 466 TAGLNV----VVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKEVKNAR----EEGANFEFNVQPVALELNEQ 537 (654)
T ss_pred CCCCeE----EEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHHHHHHHH----HcCCeEEeccCcEEEEECCC
Confidence 356666 999999999999998888875 7999998754 344444444444 689999987766665311
Q ss_pred Ce------------------------------------------e-------e--cceeec-CCeEEecCCCCcccccCC
Q psy5231 84 NT------------------------------------------V-------T--GQLEMN-DGYIKTKLNKKTGYTSTN 111 (148)
Q Consensus 84 ~~------------------------------------------~-------~--~~~~~~-~g~i~vd~~~~~~~~~t~ 111 (148)
+. + . .+++++ +|.|.+|+.. ...++|+
T Consensus 538 g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~-~~~~~Ts 616 (654)
T PRK12769 538 GHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVES-QYRYQTS 616 (654)
T ss_pred CeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCc-ccCcccC
Confidence 00 0 0 023344 3667777410 0017999
Q ss_pred CCCeEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231 112 ISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148 (148)
Q Consensus 112 ~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l 148 (148)
.|+|||+||++.++ ..+..|+++|+.||.+|++||
T Consensus 617 ~~gVfAaGD~~~g~--~~vv~Ai~~Gr~AA~~I~~~L 651 (654)
T PRK12769 617 NPKIFAGGDAVRGA--DLVVTAMAEGRHAAQGIIDWL 651 (654)
T ss_pred CCCEEEcCCcCCCC--cHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998776 688999999999999999987
No 57
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.73 E-value=1.1e-16 Score=128.89 Aligned_cols=124 Identities=21% Similarity=0.184 Sum_probs=92.4
Q ss_pred cCCcccceEEEEcCchHHHHHHHHHhhcC-CeEEEEEeCCC--CCchHHHHHHHHhHHhcCCcEEEcCceEEEEecCC--
Q psy5231 10 LIKPVIIFTDVIGGGNTAVEEALYLSNIA-KKVTLIHRNEK--LRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN-- 84 (148)
Q Consensus 10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~--~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~-- 84 (148)
.+|++ +|+|||++|+++|..+.+.| .+||+++|++. +...+...+++. +.||++++++.+.++..+.
T Consensus 281 ~gk~V----vVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~e~~~~~----~~GV~~~~~~~~~~i~~~~~g 352 (467)
T TIGR01318 281 EGKRV----VVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRREVANAR----EEGVEFLFNVQPVYIECDEDG 352 (467)
T ss_pred CCCEE----EEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCHHHHHHHH----hcCCEEEecCCcEEEEECCCC
Confidence 45666 99999999999999999998 47999998764 333444444443 5899999887776664210
Q ss_pred -------------------------------e-----------e-e--------cceeec-CCeEEec----CCCCcccc
Q psy5231 85 -------------------------------T-----------V-T--------GQLEMN-DGYIKTK----LNKKTGYT 108 (148)
Q Consensus 85 -------------------------------~-----------~-~--------~~~~~~-~g~i~vd----~~~~~~~~ 108 (148)
. . . .+++++ .|++.+| .. +
T Consensus 353 ~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~-----~ 427 (467)
T TIGR01318 353 RVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLP-----Y 427 (467)
T ss_pred eEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccC-----c
Confidence 0 0 0 012333 3677787 44 8
Q ss_pred cCCCCCeEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231 109 STNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148 (148)
Q Consensus 109 ~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l 148 (148)
+|+.|+||++||++..+ ..+..|+.+|+.||.+|++||
T Consensus 428 ~T~~~gVfa~GD~~~~~--~~~~~Ai~~G~~aA~~i~~~L 465 (467)
T TIGR01318 428 QTTNPKIFAGGDAVRGA--DLVVTAVAEGRQAAQGILDWL 465 (467)
T ss_pred cCCCCCEEEECCcCCCc--cHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999998776 578899999999999999987
No 58
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.73 E-value=6.9e-17 Score=139.59 Aligned_cols=131 Identities=28% Similarity=0.298 Sum_probs=92.6
Q ss_pred hhcCCcccceEEEEcCchHHHHHHHHHhhcCC-eEEEEEeCCCC--CchHHHHHHHHhHHhcCCcEEEcCceEEEEecC-
Q psy5231 8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIAK-KVTLIHRNEKL--RCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGN- 83 (148)
Q Consensus 8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~--~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~- 83 (148)
...||+| +|||||++|+|+|..+.+.|. .|+++.|+... +......+.++ +.||++++.+.+.++..+
T Consensus 568 ~~~Gk~V----vVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~e~~~a~----eeGI~~~~~~~p~~i~~~~ 639 (1006)
T PRK12775 568 ISLGKSV----VVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIEEIRHAK----EEGIDFFFLHSPVEIYVDA 639 (1006)
T ss_pred ccCCCEE----EEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCCHHHHHHHH----hCCCEEEecCCcEEEEeCC
Confidence 3456777 999999999999999999986 58888876432 22233233333 689999988776665321
Q ss_pred -C------------------------------e-----------------e-e--cceeecC-CeEEecCCCCcccccCC
Q psy5231 84 -N------------------------------T-----------------V-T--GQLEMND-GYIKTKLNKKTGYTSTN 111 (148)
Q Consensus 84 -~------------------------------~-----------------~-~--~~~~~~~-g~i~vd~~~~~~~~~t~ 111 (148)
+ . + . .++.++. |.|.+|+......++||
T Consensus 640 ~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts 719 (1006)
T PRK12775 640 EGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQSTN 719 (1006)
T ss_pred CCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCccccCcCCC
Confidence 0 0 0 0 1234443 77888861000018999
Q ss_pred CCCeEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231 112 ISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148 (148)
Q Consensus 112 ~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l 148 (148)
+|+|||+||++.++ .++..|+++|+.||.+|++||
T Consensus 720 ~pgVFAaGDv~~G~--~~vv~Ai~~Gr~AA~~I~~~L 754 (1006)
T PRK12775 720 LPGVFAGGDIVTGG--ATVILAMGAGRRAARSIATYL 754 (1006)
T ss_pred CCCEEEecCcCCCc--cHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998776 689999999999999999986
No 59
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.73 E-value=7.3e-17 Score=136.74 Aligned_cols=126 Identities=18% Similarity=0.197 Sum_probs=98.9
Q ss_pred cCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC---chHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe-
Q psy5231 10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR---CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT- 85 (148)
Q Consensus 10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~- 85 (148)
.++++ +|||||++|+|+|..|++.|.+|+++++.+.+. .++...+.+.+.|++.||++++++.+.++.++..
T Consensus 139 ~~k~v----vVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~ 214 (785)
T TIGR02374 139 RFKKA----AVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGATKA 214 (785)
T ss_pred cCCeE----EEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEcCCce
Confidence 45666 999999999999999999999999999987763 2455667777788889999999998888764321
Q ss_pred ---------------------------ee--cceeecCCeEEecCCCCcccccCCCCCeEEecccCcccc--chhHHHHH
Q psy5231 86 ---------------------------VT--GQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF--IDKQLLAL 134 (148)
Q Consensus 86 ---------------------------~~--~~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~--~~~~~~A~ 134 (148)
+. .+++.+ +.|.||++ ++|+.|+|||+|||+..++ +..+..|.
T Consensus 215 ~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~~~gl~~~-ggI~Vd~~-----~~Ts~p~IyA~GD~a~~~~~~~gl~~~a~ 288 (785)
T TIGR02374 215 DRIRFKDGSSLEADLIVMAAGIRPNDELAVSAGIKVN-RGIIVNDS-----MQTSDPDIYAVGECAEHNGRVYGLVAPLY 288 (785)
T ss_pred EEEEECCCCEEEcCEEEECCCCCcCcHHHHhcCCccC-CCEEECCC-----cccCCCCEEEeeecceeCCcccccHHHHH
Confidence 10 123333 56889998 9999999999999987542 23567788
Q ss_pred HHHHHHHHHHH
Q psy5231 135 GSGCMAALDAQ 145 (148)
Q Consensus 135 ~~G~~aA~~i~ 145 (148)
.+|+.||.||.
T Consensus 289 ~qa~vaA~ni~ 299 (785)
T TIGR02374 289 EQAKVLADHIC 299 (785)
T ss_pred HHHHHHHHHhc
Confidence 99999999985
No 60
>PRK13984 putative oxidoreductase; Provisional
Probab=99.71 E-value=1.8e-16 Score=131.15 Aligned_cols=121 Identities=22% Similarity=0.216 Sum_probs=84.6
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCC------eEEEEEeC---CCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEecC---
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAK------KVTLIHRN---EKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGN--- 83 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~------~Vtlv~~~---~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~--- 83 (148)
++|+|||||++|+|+|..|++.+. +|+++... ..+........++. +.||++++++.+.++..+
T Consensus 419 k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~~~~e~~~~~----~~GV~i~~~~~~~~i~~~~g~ 494 (604)
T PRK13984 419 RSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPADMEEIEEGL----EEGVVIYPGWGPMEVVIENDK 494 (604)
T ss_pred CcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCCCCHHHHHHHH----HcCCEEEeCCCCEEEEccCCE
Confidence 334999999999999999998753 78887432 12333333333333 479998876544333210
Q ss_pred ---------------------------C-e------------------ee----cceeecCCeEEecCCCCcccccCCCC
Q psy5231 84 ---------------------------N-T------------------VT----GQLEMNDGYIKTKLNKKTGYTSTNIS 113 (148)
Q Consensus 84 ---------------------------~-~------------------~~----~~~~~~~g~i~vd~~~~~~~~~t~~~ 113 (148)
. . +. ..+.++.|.|.+|+. ++|++|
T Consensus 495 v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~~G~i~vd~~-----~~Ts~~ 569 (604)
T PRK13984 495 VKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFVRGRILTNEY-----GQTSIP 569 (604)
T ss_pred EEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccccCCeEEeCCC-----CccCCC
Confidence 0 0 00 012334578899988 999999
Q ss_pred CeEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231 114 GVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148 (148)
Q Consensus 114 ~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l 148 (148)
+|||+||++..+ ++..|+++|+.||.+|++||
T Consensus 570 gVfAaGD~~~~~---~~v~Ai~~G~~AA~~I~~~L 601 (604)
T PRK13984 570 WLFAGGDIVHGP---DIIHGVADGYWAAEGIDMYL 601 (604)
T ss_pred CEEEecCcCCch---HHHHHHHHHHHHHHHHHHHh
Confidence 999999999765 67889999999999999987
No 61
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.71 E-value=1.8e-16 Score=123.56 Aligned_cols=126 Identities=20% Similarity=0.248 Sum_probs=94.4
Q ss_pred eEEEEcCchHHHHHHHHHhhc----C--CeEEEEEeCCCCC--chHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe---
Q psy5231 17 FTDVIGGGNTAVEEALYLSNI----A--KKVTLIHRNEKLR--CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT--- 85 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~----g--~~Vtlv~~~~~~~--~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~--- 85 (148)
+++|+|+|++|+|+|..|++. | .+|+++ +.+.+. .++...+.+.+.|++.||++++++.++++..+..
T Consensus 147 ~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~v~~~ 225 (364)
T TIGR03169 147 RLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPDGALILA 225 (364)
T ss_pred eEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcCCeEEeC
Confidence 339999999999999999853 3 589999 444442 2355667777788889999999999988754321
Q ss_pred ---------------------e-ecceeec-CCeEEecCCCCcccccC-CCCCeEEecccCcccc---chhHHHHHHHHH
Q psy5231 86 ---------------------V-TGQLEMN-DGYIKTKLNKKTGYTST-NISGVFCRWRCTRLYF---IDKQLLALGSGC 138 (148)
Q Consensus 86 ---------------------~-~~~~~~~-~g~i~vd~~~~~~~~~t-~~~~vya~GD~~~~~~---~~~~~~A~~~G~ 138 (148)
+ ..++.++ .|++.+|+. ++| +.|+|||+|||+..+. .+....|..+|+
T Consensus 226 ~g~~i~~D~vi~a~G~~p~~~l~~~gl~~~~~g~i~vd~~-----l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~ 300 (364)
T TIGR03169 226 DGRTLPADAILWATGARAPPWLAESGLPLDEDGFLRVDPT-----LQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAP 300 (364)
T ss_pred CCCEEecCEEEEccCCChhhHHHHcCCCcCCCCeEEECCc-----cccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHH
Confidence 0 0134454 489999998 887 9999999999985421 235678999999
Q ss_pred HHHHHHHhhC
Q psy5231 139 MAALDAQRYL 148 (148)
Q Consensus 139 ~aA~~i~~~l 148 (148)
.+|.||.+.|
T Consensus 301 ~~a~ni~~~l 310 (364)
T TIGR03169 301 ILAANLRASL 310 (364)
T ss_pred HHHHHHHHHh
Confidence 9999997653
No 62
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.71 E-value=1.5e-16 Score=128.24 Aligned_cols=129 Identities=20% Similarity=0.144 Sum_probs=88.9
Q ss_pred hcCCcccceEEEEcCchHHHHHHHHHhhcCC-eEEEEEeCCCCCchH-------HHHH-HHHhHHhcCCcEEEcCceEEE
Q psy5231 9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAK-KVTLIHRNEKLRCEK-------ILID-RLMQKVNEGKIDIKLKHIVHK 79 (148)
Q Consensus 9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~~~~~-------~~~~-~l~~~l~~~~v~i~~~~~v~~ 79 (148)
..+|+| +|||||++|+|+|..+.+.|. +||++++.+...... .... ...+.+++.||++++++.+.+
T Consensus 279 ~~gk~V----vVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~ 354 (471)
T PRK12810 279 AKGKHV----VVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKE 354 (471)
T ss_pred CCCCEE----EEECCcHHHHHHHHHHHHcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceE
Confidence 346666 999999999999998887764 799776543221111 0000 012233368999998877666
Q ss_pred EecCC-------------------------e-------------------ee--cceeec-CCeEEec-CCCCcccccCC
Q psy5231 80 IIGNN-------------------------T-------------------VT--GQLEMN-DGYIKTK-LNKKTGYTSTN 111 (148)
Q Consensus 80 i~~~~-------------------------~-------------------~~--~~~~~~-~g~i~vd-~~~~~~~~~t~ 111 (148)
+.+++ . +. .++.++ .|++.+| +. ++|+
T Consensus 355 i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~-----~~Ts 429 (471)
T PRK12810 355 FEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNA-----YQTS 429 (471)
T ss_pred EEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCc-----ccCC
Confidence 64210 0 00 023344 3778887 45 8999
Q ss_pred CCCeEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231 112 ISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148 (148)
Q Consensus 112 ~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l 148 (148)
.|+||++|||+..+ .++..|+++|+.||.+|+++|
T Consensus 430 ~~gVfa~GD~~~g~--~~~~~Av~~G~~AA~~i~~~L 464 (471)
T PRK12810 430 NPKVFAAGDMRRGQ--SLVVWAIAEGRQAARAIDAYL 464 (471)
T ss_pred CCCEEEccccCCCc--hhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999765 578999999999999999986
No 63
>KOG1335|consensus
Probab=99.69 E-value=6.7e-17 Score=124.51 Aligned_cols=126 Identities=18% Similarity=0.148 Sum_probs=101.2
Q ss_pred CcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe----
Q psy5231 12 KPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT---- 85 (148)
Q Consensus 12 k~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~---- 85 (148)
+.||++++|||+|.+|+|++....+.|.+||++|-.+.+.+ +.++.+..++.|.+.|++|++++++..++.++.
T Consensus 208 ~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~ 287 (506)
T KOG1335|consen 208 KEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVE 287 (506)
T ss_pred hhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceE
Confidence 35678899999999999999999999999999998777644 667777777777789999999999998775432
Q ss_pred ---------------------------ee-------cceeecC-CeEEecCCCCcccccCCCCCeEEecccCccccchhH
Q psy5231 86 ---------------------------VT-------GQLEMND-GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQ 130 (148)
Q Consensus 86 ---------------------------~~-------~~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~ 130 (148)
+. -+++.|. +.+.+|.. ++|.+|+||++||+..+| -..
T Consensus 288 i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~-----f~t~vP~i~~IGDv~~gp--MLA 360 (506)
T KOG1335|consen 288 IEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTR-----FQTKVPHIYAIGDVTLGP--MLA 360 (506)
T ss_pred EEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceecccc-----ccccCCceEEecccCCcc--hhh
Confidence 11 1445553 88888888 999999999999999887 466
Q ss_pred HHHHHHHHHHHHHH
Q psy5231 131 LLALGSGCMAALDA 144 (148)
Q Consensus 131 ~~A~~~G~~aA~~i 144 (148)
+.|-.||..+...|
T Consensus 361 hkAeeegI~~VE~i 374 (506)
T KOG1335|consen 361 HKAEEEGIAAVEGI 374 (506)
T ss_pred hhhhhhchhheeee
Confidence 77778886665443
No 64
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.68 E-value=7.1e-16 Score=128.31 Aligned_cols=128 Identities=20% Similarity=0.182 Sum_probs=90.5
Q ss_pred cCCcccceEEEEcCchHHHHHHHHHhhcC-CeEEEEEeCCCC--CchHHHHHHHHhHHhcCCcEEEcCceEEEEecCC--
Q psy5231 10 LIKPVIIFTDVIGGGNTAVEEALYLSNIA-KKVTLIHRNEKL--RCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN-- 84 (148)
Q Consensus 10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~--~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~-- 84 (148)
.||++ +|+|||++++++|..+.+.| .+||+++|++.. ...+.....++ +.||++++.+.++++..++
T Consensus 450 ~gk~v----vViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~e~~~a~----~eGv~~~~~~~~~~i~~~~~g 521 (639)
T PRK12809 450 EGKRV----VVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRKEVVNAR----EEGVEFQFNVQPQYIACDEDG 521 (639)
T ss_pred CCCeE----EEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHH----HcCCeEEeccCCEEEEECCCC
Confidence 45666 99999999999999888887 589999987543 33333333333 5899999887666653210
Q ss_pred -------------------------------e-----------e--------e-cceeecC-CeEEecCCCCcccccCCC
Q psy5231 85 -------------------------------T-----------V--------T-GQLEMND-GYIKTKLNKKTGYTSTNI 112 (148)
Q Consensus 85 -------------------------------~-----------~--------~-~~~~~~~-g~i~vd~~~~~~~~~t~~ 112 (148)
. + . .+++++. |++.+|+.. ...++|+.
T Consensus 522 ~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~-~~~~~Ts~ 600 (639)
T PRK12809 522 RLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVG-YLPTQTHL 600 (639)
T ss_pred eEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCc-ccCcccCC
Confidence 0 0 0 0233332 666676420 00178999
Q ss_pred CCeEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231 113 SGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148 (148)
Q Consensus 113 ~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l 148 (148)
|+|||+||++.++ .++..|+++|+.||.+|++||
T Consensus 601 ~gVfA~GD~~~g~--~~vv~Ai~~Gr~AA~~i~~~l 634 (639)
T PRK12809 601 KKVFAGGDAVHGA--DLVVTAMAAGRQAARDMLTLF 634 (639)
T ss_pred CCEEEcCCCCCCc--hHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998766 688999999999999999986
No 65
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.68 E-value=8.2e-16 Score=131.70 Aligned_cols=123 Identities=21% Similarity=0.232 Sum_probs=90.9
Q ss_pred cCCcccceEEEEcCchHHHHHHHHHhhc-C-CeEEEEEeCCC--CCchHHHHHHHHhHHhcCCcEEEcCceEEEEecCC-
Q psy5231 10 LIKPVIIFTDVIGGGNTAVEEALYLSNI-A-KKVTLIHRNEK--LRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN- 84 (148)
Q Consensus 10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~-g-~~Vtlv~~~~~--~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~- 84 (148)
.||+| +|||||++|+|+|..+.+. | ++|+++.|++. ++..+...+... +.||++++.+.+.++..++
T Consensus 667 ~GKrV----VVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~eEle~Al----eeGVe~~~~~~p~~I~~dG~ 738 (1019)
T PRK09853 667 LGKHV----VVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWREEYEEAL----EDGVEFKELLNPESFDADGT 738 (1019)
T ss_pred CCCEE----EEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccccHHHHHHHH----HcCCEEEeCCceEEEEcCCc
Confidence 46666 9999999999999998887 4 58999998653 333333333333 4799999877766664110
Q ss_pred -------------------------e-------------------e-ecceeecC-CeEEecCCCCcccccCCCCCeEEe
Q psy5231 85 -------------------------T-------------------V-TGQLEMND-GYIKTKLNKKTGYTSTNISGVFCR 118 (148)
Q Consensus 85 -------------------------~-------------------~-~~~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~ 118 (148)
. + ..++.++. |++.+|+. ++|+.|+|||+
T Consensus 739 l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle~~GL~ld~~G~I~VDet-----lqTs~pgVFAa 813 (1019)
T PRK09853 739 LTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKANGIPLDKKGWPVVDAN-----GETSLTNVYMI 813 (1019)
T ss_pred EEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHHhcCccccCCCCEEeCCC-----cccCCCCEEEE
Confidence 0 0 01344553 78888887 99999999999
Q ss_pred cccCccccchhHHHHHHHHHHHHHHHHhh
Q psy5231 119 WRCTRLYFIDKQLLALGSGCMAALDAQRY 147 (148)
Q Consensus 119 GD~~~~~~~~~~~~A~~~G~~aA~~i~~~ 147 (148)
|||+.++ ..+..|+++|+.||.+|.+.
T Consensus 814 GD~a~Gp--~tvv~Ai~qGr~AA~nI~~~ 840 (1019)
T PRK09853 814 GDVQRGP--STIVAAIADARRAADAILSR 840 (1019)
T ss_pred eccccCc--hHHHHHHHHHHHHHHHHhhh
Confidence 9998776 68999999999999999764
No 66
>KOG1336|consensus
Probab=99.65 E-value=1.7e-15 Score=119.30 Aligned_cols=122 Identities=20% Similarity=0.182 Sum_probs=97.5
Q ss_pred EEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc---hHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe---------
Q psy5231 18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC---EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT--------- 85 (148)
Q Consensus 18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~--------- 85 (148)
|+++|+|.+|+|+|..|...+++||+|++.+.+.. .+.+.+.+++.|++.||++++++.++++..+..
T Consensus 216 vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~ 295 (478)
T KOG1336|consen 216 VVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLK 295 (478)
T ss_pred EEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEec
Confidence 49999999999999999999999999998765422 466778888899999999999999998876542
Q ss_pred ----------------------eecceeec-CCeEEecCCCCcccccCCCCCeEEecccCcccc--------chhHHHHH
Q psy5231 86 ----------------------VTGQLEMN-DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF--------IDKQLLAL 134 (148)
Q Consensus 86 ----------------------~~~~~~~~-~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~--------~~~~~~A~ 134 (148)
+..+..++ .|+|.||+. ++|++|+|||+||+++.|- ...+..|.
T Consensus 296 dg~~l~adlvv~GiG~~p~t~~~~~g~~~~~~G~i~V~~~-----f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~ 370 (478)
T KOG1336|consen 296 DGKTLEADLVVVGIGIKPNTSFLEKGILLDSKGGIKVDEF-----FQTSVPNVYAIGDVATFPLKGYGEDRRVEHVDHAR 370 (478)
T ss_pred cCCEeccCeEEEeeccccccccccccceecccCCEeehhc-----eeeccCCcccccceeecccccccccccchHHHHHH
Confidence 11133344 499999999 9999999999999998751 13567788
Q ss_pred HHHHHHHHHH
Q psy5231 135 GSGCMAALDA 144 (148)
Q Consensus 135 ~~G~~aA~~i 144 (148)
.+|+.|..+|
T Consensus 371 ~~g~~av~ai 380 (478)
T KOG1336|consen 371 ASGRQAVKAI 380 (478)
T ss_pred HHHHhhhhhh
Confidence 8888765554
No 67
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.64 E-value=4.9e-15 Score=127.24 Aligned_cols=124 Identities=24% Similarity=0.290 Sum_probs=89.4
Q ss_pred hcCCcccceEEEEcCchHHHHHHHHHhhc-C-CeEEEEEeCCC--CCchHHHHHHHHhHHhcCCcEEEcCceEEEEecC-
Q psy5231 9 ALIKPVIIFTDVIGGGNTAVEEALYLSNI-A-KKVTLIHRNEK--LRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGN- 83 (148)
Q Consensus 9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~-g-~~Vtlv~~~~~--~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~- 83 (148)
..||+| +|||||++|+|+|..+.+. | .+|++++|+.. ++..+.....+. +.||++++...+.++..+
T Consensus 664 ~~GK~V----VVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~eEl~~al----eeGVe~~~~~~p~~I~~g~ 735 (1012)
T TIGR03315 664 PLGKHV----VVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREELEEAL----EDGVDFKELLSPESFEDGT 735 (1012)
T ss_pred ccCCeE----EEECCCHHHHHHHHHHHHhCCCceEEEEEccCccccccCHHHHHHHH----HcCCEEEeCCceEEEECCe
Confidence 346666 9999999999999998876 6 48999998653 233333333333 468998877665554310
Q ss_pred ----------------------Ce---------------------e-ecceeecC-CeEEecCCCCcccccCCCCCeEEe
Q psy5231 84 ----------------------NT---------------------V-TGQLEMND-GYIKTKLNKKTGYTSTNISGVFCR 118 (148)
Q Consensus 84 ----------------------~~---------------------~-~~~~~~~~-g~i~vd~~~~~~~~~t~~~~vya~ 118 (148)
+. + ..++.++. |++.+|+.+ ++|+.|+|||+
T Consensus 736 l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~GL~ld~~G~I~VD~~~----~~Ts~pgVFAa 811 (1012)
T TIGR03315 736 LTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQAT----GETNITNVFVI 811 (1012)
T ss_pred EEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHHHHhcCcccCCCCCEEeCCCC----CccCCCCEEEE
Confidence 00 0 01344453 788899865 89999999999
Q ss_pred cccCccccchhHHHHHHHHHHHHHHHHh
Q psy5231 119 WRCTRLYFIDKQLLALGSGCMAALDAQR 146 (148)
Q Consensus 119 GD~~~~~~~~~~~~A~~~G~~aA~~i~~ 146 (148)
|||+..+ ..+..|+++|+.||.+|..
T Consensus 812 GD~a~GP--~tVv~AIaqGr~AA~nIl~ 837 (1012)
T TIGR03315 812 GDANRGP--ATIVEAIADGRKAANAILS 837 (1012)
T ss_pred eCcCCCc--cHHHHHHHHHHHHHHHHhc
Confidence 9998766 6899999999999999974
No 68
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.62 E-value=1.1e-14 Score=119.69 Aligned_cols=125 Identities=26% Similarity=0.338 Sum_probs=92.6
Q ss_pred cCCcccceEEEEcCchHHHHHHHHHhhcC-CeEEEEEeCCC--CCchHHHHHHHHhHHhcCCcEEEcCceEEEEecCC--
Q psy5231 10 LIKPVIIFTDVIGGGNTAVEEALYLSNIA-KKVTLIHRNEK--LRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN-- 84 (148)
Q Consensus 10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~--~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~-- 84 (148)
.++++ +|+|||.+++++|..+.+++ .+|+++.|.+. +.......+.+. +.||++++++.+.++..+.
T Consensus 266 ~gk~v----~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~~~~~~~a~----~~GVki~~~~~~~~i~~~~~~ 337 (564)
T PRK12771 266 LGKRV----VVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHDEEIEEAL----REGVEINWLRTPVEIEGDENG 337 (564)
T ss_pred CCCCE----EEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCCCHHHHHHHH----HcCCEEEecCCcEEEEcCCCC
Confidence 46666 99999999999999988888 78999998653 333333333333 4799999887776664321
Q ss_pred ----------------------------e------------------ee--cceeecCCeEEecCCCCcccccCCCCCeE
Q psy5231 85 ----------------------------T------------------VT--GQLEMNDGYIKTKLNKKTGYTSTNISGVF 116 (148)
Q Consensus 85 ----------------------------~------------------~~--~~~~~~~g~i~vd~~~~~~~~~t~~~~vy 116 (148)
. +. .++..+.|+|.+|+.+ ++|+.|+||
T Consensus 338 ~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl~~~~G~i~vd~~~----~~ts~~~Vf 413 (564)
T PRK12771 338 ATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVEVGRGVVQVDPNF----MMTGRPGVF 413 (564)
T ss_pred EEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhhhccCcccCCCCEEeCCCC----ccCCCCCEE
Confidence 0 00 1122124778888854 899999999
Q ss_pred EecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231 117 CRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148 (148)
Q Consensus 117 a~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l 148 (148)
++||++..+ +.+..|+++|+.||.+|+++|
T Consensus 414 a~GD~~~g~--~~v~~Av~~G~~aA~~i~~~L 443 (564)
T PRK12771 414 AGGDMVPGP--RTVTTAIGHGKKAARNIDAFL 443 (564)
T ss_pred eccCcCCCc--hHHHHHHHHHHHHHHHHHHHH
Confidence 999998766 689999999999999999886
No 69
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.61 E-value=1.1e-14 Score=117.83 Aligned_cols=47 Identities=36% Similarity=0.453 Sum_probs=40.6
Q ss_pred CeEEe-cCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231 95 GYIKT-KLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148 (148)
Q Consensus 95 g~i~v-d~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l 148 (148)
|.+.+ |+. ++|+.|+|||+|||+..+ .++..|+++|+.||.+|++||
T Consensus 431 G~i~~~~~~-----~~Ts~~gVfAaGD~~~g~--~~~~~Av~~G~~AA~~i~~~L 478 (485)
T TIGR01317 431 GNISAGYDD-----YSTSIPGVFAAGDCRRGQ--SLIVWAINEGRKAAAAVDRYL 478 (485)
T ss_pred CCEEecCCC-----ceECCCCEEEeeccCCCc--HHHHHHHHHHHHHHHHHHHHH
Confidence 66644 445 999999999999998766 688999999999999999986
No 70
>KOG4716|consensus
Probab=99.61 E-value=1.7e-15 Score=115.42 Aligned_cols=121 Identities=21% Similarity=0.227 Sum_probs=96.9
Q ss_pred EEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc-hHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe------------
Q psy5231 19 DVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC-EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT------------ 85 (148)
Q Consensus 19 ~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~------------ 85 (148)
+|||+|.+|+|||.+|+.+|.+||++.|+--+++ +.++.+.+.+.|++.||+|...+.+.+++..+.
T Consensus 202 LvVGa~YVaLECAgFL~gfg~~vtVmVRSI~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t 281 (503)
T KOG4716|consen 202 LVVGAGYVALECAGFLKGFGYDVTVMVRSILLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKLRVFYKNTNT 281 (503)
T ss_pred EEEccceeeeehhhhHhhcCCCcEEEEEEeecccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcEEEEeecccc
Confidence 6999999999999999999999999999877766 678889999999999999987765555542111
Q ss_pred -------------------------e-ecceeec--CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHH
Q psy5231 86 -------------------------V-TGQLEMN--DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSG 137 (148)
Q Consensus 86 -------------------------~-~~~~~~~--~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G 137 (148)
+ ..++..+ .+.|.+|+. .+|++|+|||+||+.... +.....|+..|
T Consensus 282 ~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~-----e~t~vp~vyAvGDIl~~k-pELTPvAIqsG 355 (503)
T KOG4716|consen 282 GEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDE-----EATNVPYVYAVGDILEDK-PELTPVAIQSG 355 (503)
T ss_pred cccccchhhhhhhhhccccchhhcCCCccceeecccCCccccChH-----HhcCCCceEEecceecCC-cccchhhhhhc
Confidence 1 1144554 367778877 899999999999997654 36788999999
Q ss_pred HHHHHHHH
Q psy5231 138 CMAALDAQ 145 (148)
Q Consensus 138 ~~aA~~i~ 145 (148)
+.-|..+.
T Consensus 356 rlLa~Rlf 363 (503)
T KOG4716|consen 356 RLLARRLF 363 (503)
T ss_pred hHHHHHHh
Confidence 99988764
No 71
>KOG2495|consensus
Probab=99.57 E-value=1.3e-14 Score=113.16 Aligned_cols=127 Identities=21% Similarity=0.278 Sum_probs=95.5
Q ss_pred eEEEEcCchHHHHHHHHHhhc--------------CCeEEEEEeCCCCCc--hHHHHHHHHhHHhcCCcEEEcCceEEEE
Q psy5231 17 FTDVIGGGNTAVEEALYLSNI--------------AKKVTLIHRNEKLRC--EKILIDRLMQKVNEGKIDIKLKHIVHKI 80 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~--------------g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~~~v~i~~~~~v~~i 80 (148)
+++|||||++|+|+|.+|+.+ -.+|||++-.+.+.. +..+.+...+++.+.+|++.+++.|+++
T Consensus 220 h~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V 299 (491)
T KOG2495|consen 220 HFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDTGTMVKKV 299 (491)
T ss_pred EEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhhccceeecccEEEee
Confidence 569999999999999999854 237999998776543 4567777888888999999999999887
Q ss_pred ecCCe----------------e--ec---------c--eeecC-C--eEEecCCCCcccccCCCCCeEEecccCccccc-
Q psy5231 81 IGNNT----------------V--TG---------Q--LEMND-G--YIKTKLNKKTGYTSTNISGVFCRWRCTRLYFI- 127 (148)
Q Consensus 81 ~~~~~----------------~--~~---------~--~~~~~-g--~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~- 127 (148)
+++.. + .. . -..+. + .+.+|+++ ....++||||+|||+..+++
T Consensus 300 ~~~~I~~~~~~g~~~~iPYG~lVWatG~~~rp~~k~lm~~i~e~~rr~L~vDE~L----rV~G~~nvfAiGDca~~~~~~ 375 (491)
T KOG2495|consen 300 TEKTIHAKTKDGEIEEIPYGLLVWATGNGPRPVIKDLMKQIDEQGRRGLAVDEWL----RVKGVKNVFAIGDCADQRGLK 375 (491)
T ss_pred cCcEEEEEcCCCceeeecceEEEecCCCCCchhhhhHhhcCCccCceeeeeecee----eccCcCceEEeccccccccCc
Confidence 75432 0 00 0 01222 3 78999994 44689999999999955433
Q ss_pred hhHHHHHHHHHHHHHHHHhh
Q psy5231 128 DKQLLALGSGCMAALDAQRY 147 (148)
Q Consensus 128 ~~~~~A~~~G~~aA~~i~~~ 147 (148)
++...|..||.-.|.+..+.
T Consensus 376 ~tAQVA~QqG~yLAk~fn~m 395 (491)
T KOG2495|consen 376 PTAQVAEQQGAYLAKNFNKM 395 (491)
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 37778999999999988653
No 72
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.56 E-value=4.6e-14 Score=87.63 Aligned_cols=68 Identities=26% Similarity=0.349 Sum_probs=61.0
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC--chHHHHHHHHhHHhcCCcEEEcCceEEEEecCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR--CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN 84 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~ 84 (148)
+++|||||++|+|+|..|++.|++||++++.+.+. .++...+.+++.|++.||++++++.+.++..++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~ 70 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDG 70 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEET
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeC
Confidence 46999999999999999999999999999998875 367788888888889999999999999998654
No 73
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.46 E-value=1.6e-12 Score=101.91 Aligned_cols=125 Identities=20% Similarity=0.236 Sum_probs=97.7
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCch---HHHHHHHHhHHhcCCcEEEcCceEEEEecCC--------
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCE---KILIDRLMQKVNEGKIDIKLKHIVHKIIGNN-------- 84 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~---~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~-------- 84 (148)
++++|+|+|++|+++|..+++.|++|++++..+++... +...+.+.+.|+..||++++++.+.++....
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~ 216 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERV 216 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEE
Confidence 45599999999999999999999999999998887553 6778888888889999999999988887531
Q ss_pred e-----------------------ee-cc---eeecCCeEEecCCCCcccccCC-CCCeEEecccCcccc--------ch
Q psy5231 85 T-----------------------VT-GQ---LEMNDGYIKTKLNKKTGYTSTN-ISGVFCRWRCTRLYF--------ID 128 (148)
Q Consensus 85 ~-----------------------~~-~~---~~~~~g~i~vd~~~~~~~~~t~-~~~vya~GD~~~~~~--------~~ 128 (148)
. +. +. .....|++.+|+. ++|+ .++||++|||+..+. ..
T Consensus 217 ~~~~~~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~-----~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~ 291 (415)
T COG0446 217 VGIDGEEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDER-----GGTSKDPDVYAAGDVAEIPAAETGKGGRIA 291 (415)
T ss_pred EEeCCcEEEeeEEEEeecccccHHHHhhCccceeccCCCEEEccc-----cccCCCCCEEeccceEeeecccCCceeeee
Confidence 1 01 11 2223478999999 8887 999999999876531 22
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy5231 129 KQLLALGSGCMAALDAQ 145 (148)
Q Consensus 129 ~~~~A~~~G~~aA~~i~ 145 (148)
.+..+...+..++.++.
T Consensus 292 ~~~~a~~~~~i~~~~~~ 308 (415)
T COG0446 292 LWAIAVAAGRIAAENIA 308 (415)
T ss_pred chhhHhhhhHHHHHHhc
Confidence 44567788888888775
No 74
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.42 E-value=3.2e-12 Score=110.99 Aligned_cols=126 Identities=19% Similarity=0.177 Sum_probs=86.0
Q ss_pred cCCcccceEEEEcCchHHHHHHHHHhhcC-CeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe---
Q psy5231 10 LIKPVIIFTDVIGGGNTAVEEALYLSNIA-KKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT--- 85 (148)
Q Consensus 10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~--- 85 (148)
.|+++ +|||+|++|+|+|..|+++| ..|+++++.+.+ .+. +.+.|++.||++++++.+.++.+++.
T Consensus 316 ~gk~V----vViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~--~~~----l~~~L~~~GV~i~~~~~v~~i~g~~~v~~ 385 (985)
T TIGR01372 316 PGKRI----VVATNNDSAYRAAADLLAAGIAVVAIIDARADV--SPE----ARAEARELGIEVLTGHVVAATEGGKRVSG 385 (985)
T ss_pred CCCeE----EEECCCHHHHHHHHHHHHcCCceEEEEccCcch--hHH----HHHHHHHcCCEEEcCCeEEEEecCCcEEE
Confidence 57777 99999999999999999999 467888876544 222 33445578999999999988865431
Q ss_pred --ee----c--ceeec------------------CCeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHH
Q psy5231 86 --VT----G--QLEMN------------------DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCM 139 (148)
Q Consensus 86 --~~----~--~~~~~------------------~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~ 139 (148)
+. . .++.| ...+..|+....+.-.|++|+||++||+++.. ++..|+.+|+.
T Consensus 386 V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~~~~~~~t~v~gVyaaGD~~g~~---~~~~A~~eG~~ 462 (985)
T TIGR01372 386 VAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAIAAFLPGDAVQGCILAGAANGLF---GLAAALADGAA 462 (985)
T ss_pred EEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCCeeeccccCceecCCCCCCeEEeeccCCcc---CHHHHHHHHHH
Confidence 11 0 01111 01122222200001247899999999998654 78889999999
Q ss_pred HHHHHHhhC
Q psy5231 140 AALDAQRYL 148 (148)
Q Consensus 140 aA~~i~~~l 148 (148)
||.+|...|
T Consensus 463 Aa~~i~~~l 471 (985)
T TIGR01372 463 AGAAAARAA 471 (985)
T ss_pred HHHHHHHHc
Confidence 999997654
No 75
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.42 E-value=6.5e-13 Score=109.50 Aligned_cols=121 Identities=20% Similarity=0.196 Sum_probs=94.6
Q ss_pred EEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC---chHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe----------
Q psy5231 19 DVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR---CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT---------- 85 (148)
Q Consensus 19 ~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~---------- 85 (148)
+|||||.-|+|+|..|...|.+|++++..+.+- .++.-...|+..|++.|++++++...+++.++..
T Consensus 149 vVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~ 228 (793)
T COG1251 149 VVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGT 228 (793)
T ss_pred EEEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhcCcceeeEeecCCC
Confidence 899999999999999999999999999987652 2444555677777789999999887777664332
Q ss_pred --------e------------ecceeecCCeEEecCCCCcccccCCCCCeEEecccCcccc--chhHHHHHHHHHHHHHH
Q psy5231 86 --------V------------TGQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF--IDKQLLALGSGCMAALD 143 (148)
Q Consensus 86 --------~------------~~~~~~~~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~--~~~~~~A~~~G~~aA~~ 143 (148)
+ ..++.+++ .|.+|.+ ++||.|+|||+|+|+...+ +..+..+..+++.+|.+
T Consensus 229 ~i~ad~VV~a~GIrPn~ela~~aGlavnr-GIvvnd~-----mqTsdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~h 302 (793)
T COG1251 229 EIPADLVVMAVGIRPNDELAKEAGLAVNR-GIVVNDY-----MQTSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADH 302 (793)
T ss_pred cccceeEEEecccccccHhHHhcCcCcCC-Ceeeccc-----ccccCCCeeehhhHHHhcCccceehhHHHHHHHHHHHH
Confidence 1 12445555 5788888 9999999999999986542 45677888999999887
Q ss_pred HH
Q psy5231 144 AQ 145 (148)
Q Consensus 144 i~ 145 (148)
+.
T Consensus 303 l~ 304 (793)
T COG1251 303 LC 304 (793)
T ss_pred hc
Confidence 74
No 76
>KOG0399|consensus
Probab=99.39 E-value=7.7e-13 Score=112.82 Aligned_cols=71 Identities=21% Similarity=0.349 Sum_probs=56.5
Q ss_pred hhhhhhhc-------CCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc-----------hHHHHHHHHhHH
Q psy5231 3 YEFGILAL-------IKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC-----------EKILIDRLMQKV 64 (148)
Q Consensus 3 ~~~g~~~~-------gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-----------~~~~~~~l~~~l 64 (148)
|+.||+.. |++| +|||+|+.|+.+|..|.+.|+.||+++|.++..+ +...+++--+.|
T Consensus 1770 f~egwm~p~pp~~rtg~~v----aiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll 1845 (2142)
T KOG0399|consen 1770 FEEGWMKPCPPAFRTGKRV----AIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLL 1845 (2142)
T ss_pred HHhcCCccCCcccccCcEE----EEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHH
Confidence 56777643 6666 9999999999999999999999999999987643 334555544556
Q ss_pred hcCCcEEEcCceE
Q psy5231 65 NEGKIDIKLKHIV 77 (148)
Q Consensus 65 ~~~~v~i~~~~~v 77 (148)
...||+|++++.+
T Consensus 1846 ~~egi~f~tn~ei 1858 (2142)
T KOG0399|consen 1846 EQEGIRFVTNTEI 1858 (2142)
T ss_pred HhhCceEEeeccc
Confidence 6899999998876
No 77
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.31 E-value=3e-11 Score=97.72 Aligned_cols=48 Identities=10% Similarity=-0.028 Sum_probs=40.7
Q ss_pred CeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231 95 GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148 (148)
Q Consensus 95 g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l 148 (148)
|++.+|+. ++|++|||||+|||..++ ...+..+..+|..+|.+|.+++
T Consensus 374 G~V~~d~~-----~~T~ipGvyAaGDi~~Gp-~gvI~t~~~dA~~ta~~i~~d~ 421 (491)
T PLN02852 374 GRVLSSAS-----GADTEPGLYVVGWLKRGP-TGIIGTNLTCAEETVASIAEDL 421 (491)
T ss_pred ceEEeCCC-----CccCCCCEEEeeeEecCC-CCeeeecHhhHHHHHHHHHHHH
Confidence 66666665 789999999999999877 4578899999999999998764
No 78
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.26 E-value=1.2e-11 Score=88.50 Aligned_cols=32 Identities=31% Similarity=0.458 Sum_probs=29.1
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||||+.|+.+|..|++.+.+|+++++.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 46999999999999999999999999997654
No 79
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.19 E-value=7.4e-11 Score=94.70 Aligned_cols=127 Identities=26% Similarity=0.235 Sum_probs=82.7
Q ss_pred cCCcccceEEEEcCchHHHHHHHHHhhcCC-eEEEEEeCCC---CCchHH-HHHHHHhHHhcCCcEEEcCceEEEEecCC
Q psy5231 10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAK-KVTLIHRNEK---LRCEKI-LIDRLMQKVNEGKIDIKLKHIVHKIIGNN 84 (148)
Q Consensus 10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~---~~~~~~-~~~~l~~~l~~~~v~i~~~~~v~~i~~~~ 84 (148)
.||+| +|||||++++|++....+.|. +|+.+.+... ....+. ......+....+|+...+.....++.++.
T Consensus 261 ~gk~v----vVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e 336 (457)
T COG0493 261 KGKRV----VVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNE 336 (457)
T ss_pred CCCeE----EEECCCCCHHHHHHHHhhcCCeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecC
Confidence 34666 999999999999988888876 7887753211 111111 11111122224566655544444443211
Q ss_pred e---------------------------------------------e----ec------ceeecC-CeEEecCCCCcccc
Q psy5231 85 T---------------------------------------------V----TG------QLEMND-GYIKTKLNKKTGYT 108 (148)
Q Consensus 85 ~---------------------------------------------~----~~------~~~~~~-g~i~vd~~~~~~~~ 108 (148)
. + .. .+..+. |.+.+++. .
T Consensus 337 ~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~-----~ 411 (457)
T COG0493 337 GGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDEN-----L 411 (457)
T ss_pred CCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccc-----c
Confidence 0 0 01 133343 77888887 5
Q ss_pred -cCCCCCeEEecccCccccchhHHHHHHHHHHHHHHHHhh
Q psy5231 109 -STNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRY 147 (148)
Q Consensus 109 -~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~ 147 (148)
+|+.|++|+.||+..+. ..+..|+.+|+.||..|+.+
T Consensus 412 ~~ts~~~vfa~gD~~~g~--~~vv~ai~eGr~aak~i~~~ 449 (457)
T COG0493 412 QQTSIPGVFAGGDAVRGA--ALVVWAIAEGREAAKAIDKE 449 (457)
T ss_pred ccccCCCeeeCceeccch--hhhhhHHhhchHHHHhhhHH
Confidence 99999999999999865 68999999999999999843
No 80
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.01 E-value=3.2e-09 Score=84.72 Aligned_cols=127 Identities=13% Similarity=-0.008 Sum_probs=88.1
Q ss_pred EEEcCchHHHHHH-HHHh----hcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe--------
Q psy5231 19 DVIGGGNTAVEEA-LYLS----NIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT-------- 85 (148)
Q Consensus 19 ~ViGgG~~g~e~A-~~l~----~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~-------- 85 (148)
+|++.+.+|+|.+ ..++ +.|.+|+++++.+.......+.+.+.+.|++.|+++++++++.++..++.
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~ 298 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGLRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTR 298 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEee
Confidence 6899999999999 6665 46999999988776554456777788888889999999999887652110
Q ss_pred ------------------e-ecce--------------e--------------------ecCCeEEecCCCCc--ccccC
Q psy5231 86 ------------------V-TGQL--------------E--------------------MNDGYIKTKLNKKT--GYTST 110 (148)
Q Consensus 86 ------------------~-~~~~--------------~--------------------~~~g~i~vd~~~~~--~~~~t 110 (148)
+ ..++ + +..-.+.+|+.+.+ ...++
T Consensus 299 ~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~~~p~~~~g~~ 378 (422)
T PRK05329 299 NHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDATLRPLDSQGGP 378 (422)
T ss_pred CCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCCcCcccCCCCe
Confidence 0 0000 0 00112345544322 13677
Q ss_pred CCCCeEEecccCccccchhH------HHHHHHHHHHHHHHHhh
Q psy5231 111 NISGVFCRWRCTRLYFIDKQ------LLALGSGCMAALDAQRY 147 (148)
Q Consensus 111 ~~~~vya~GD~~~~~~~~~~------~~A~~~G~~aA~~i~~~ 147 (148)
..+||||+|++.++. ..+ ..|+..|..||.+|.+.
T Consensus 379 ~~~nl~a~G~vl~g~--d~~~~~~g~Gva~~ta~~a~~~~~~~ 419 (422)
T PRK05329 379 VIENLYAAGAVLGGY--DPIREGCGSGVALATALHAAEQIAEE 419 (422)
T ss_pred eccceEEeeehhcCC--chHHhCCCchhHHHHHHHHHHHHHHh
Confidence 899999999998775 223 58899999999988653
No 81
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.92 E-value=1.5e-08 Score=80.85 Aligned_cols=67 Identities=22% Similarity=0.285 Sum_probs=51.6
Q ss_pred ccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchH------------------HHHHHHHhHHhcCCcEEEcCc
Q psy5231 14 VIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEK------------------ILIDRLMQKVNEGKIDIKLKH 75 (148)
Q Consensus 14 v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~------------------~~~~~l~~~l~~~~v~i~~~~ 75 (148)
+.++++|||||.+|+++|+.|++.|.+|+|+|+.+.+.+.- ....++.. +.+|++++.+
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~---hp~i~l~Tya 199 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSN---HPNIELITYA 199 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhcc---CCceeeeeee
Confidence 44566999999999999999999999999999987765421 11122222 6799999999
Q ss_pred eEEEEecC
Q psy5231 76 IVHKIIGN 83 (148)
Q Consensus 76 ~v~~i~~~ 83 (148)
.|+++.+.
T Consensus 200 eV~ev~G~ 207 (622)
T COG1148 200 EVEEVSGS 207 (622)
T ss_pred eeeeeccc
Confidence 99987653
No 82
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.73 E-value=2e-07 Score=73.47 Aligned_cols=39 Identities=26% Similarity=0.247 Sum_probs=31.8
Q ss_pred cccCC-CCCeEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231 107 YTSTN-ISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148 (148)
Q Consensus 107 ~~~t~-~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l 148 (148)
+++|. +||+|++|+.++.. -...|+++|.+|+.|+.+++
T Consensus 349 ~l~~k~~~~lf~AGqi~G~~---Gy~eaaa~G~~ag~na~~~~ 388 (392)
T PF01134_consen 349 TLETKKIPGLFFAGQINGTE---GYEEAAAQGLIAGINAARRL 388 (392)
T ss_dssp TSBBSSSBTEEE-GGGGTB----SHHHHHHHHHHHHHHHHHHH
T ss_pred ceEECCCCCceECCCCcchh---HHHHHHHHHHHHHHHHHHHH
Confidence 37776 99999999998876 46889999999999998863
No 83
>KOG1346|consensus
Probab=98.53 E-value=7.4e-08 Score=75.98 Aligned_cols=124 Identities=16% Similarity=0.204 Sum_probs=80.8
Q ss_pred ceEEEEcCchHHHHHHHHHhhc----CCeEEEE-EeCCCCC--chHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe---
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNI----AKKVTLI-HRNEKLR--CEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT--- 85 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~----g~~Vtlv-~~~~~~~--~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~--- 85 (148)
++|.|||+|..|.|+|..|.+. |.+|+-+ +..-.+. ..+.+.+.-.+++++.||.+..+..|.++.....
T Consensus 348 ~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~ 427 (659)
T KOG1346|consen 348 QSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLV 427 (659)
T ss_pred ceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccceE
Confidence 3459999999999999999864 6688844 3321111 1234555556666689999998887766543211
Q ss_pred -------------------------e--ecceeecC--CeEEecCCCCcccccCCCCCeEEecccCcccc-------chh
Q psy5231 86 -------------------------V--TGQLEMND--GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYF-------IDK 129 (148)
Q Consensus 86 -------------------------~--~~~~~~~~--g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~-------~~~ 129 (148)
+ ..++++|. |.+.+|.. ++ -..|||++||++...+ ...
T Consensus 428 lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnae-----L~-ar~NvwvAGdaacF~D~~LGrRRVeh 501 (659)
T KOG1346|consen 428 LKLSDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAE-----LK-ARENVWVAGDAACFEDGVLGRRRVEH 501 (659)
T ss_pred EEecCCCeeeeeeEEEEecCCCchhhcccccceeecccCcEEeehe-----ee-cccceeeecchhhhhcccccceeccc
Confidence 1 12556663 66677766 44 4579999999976431 123
Q ss_pred HHHHHHHHHHHHHHHH
Q psy5231 130 QLLALGSGCMAALDAQ 145 (148)
Q Consensus 130 ~~~A~~~G~~aA~~i~ 145 (148)
.-.|+-+|+.|+.|+.
T Consensus 502 hdhavvSGRLAGENMt 517 (659)
T KOG1346|consen 502 HDHAVVSGRLAGENMT 517 (659)
T ss_pred cccceeeceecccccc
Confidence 4567778888887763
No 84
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.49 E-value=1.2e-06 Score=75.83 Aligned_cols=31 Identities=19% Similarity=0.095 Sum_probs=22.8
Q ss_pred EecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231 117 CRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148 (148)
Q Consensus 117 a~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l 148 (148)
..||+-..- -..+..|+++|+.++.+|.+||
T Consensus 739 ~~~d~~~~f-~Gtvv~A~as~k~~~~~i~~~l 769 (1028)
T PRK06567 739 YFGDCNPKY-SGSVVKALASSKEGYDAINKKL 769 (1028)
T ss_pred cccCCCCcc-ccHHHHHHHHHHhHHHHHHHHH
Confidence 355553221 2478999999999999999876
No 85
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.48 E-value=1.1e-06 Score=66.18 Aligned_cols=66 Identities=18% Similarity=0.190 Sum_probs=52.0
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC------------CCc------hHHHHHHHHhHHhcCCcEEEcCceEE
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK------------LRC------EKILIDRLMQKVNEGKIDIKLKHIVH 78 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~------------~~~------~~~~~~~l~~~l~~~~v~i~~~~~v~ 78 (148)
+|+|||||++|+++|..|++.|.+|+|+++.+. ++. ..++.+.+.+.+++.++++++ +.+.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~ 80 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI 80 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence 469999999999999999999999999997541 111 135566777777788999998 7888
Q ss_pred EEecC
Q psy5231 79 KIIGN 83 (148)
Q Consensus 79 ~i~~~ 83 (148)
++..+
T Consensus 81 ~v~~~ 85 (300)
T TIGR01292 81 KVDLS 85 (300)
T ss_pred EEEec
Confidence 87654
No 86
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.39 E-value=1.1e-06 Score=76.43 Aligned_cols=65 Identities=23% Similarity=0.278 Sum_probs=51.8
Q ss_pred hcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc-----------hHHHHHHHHhHHhcCCcEEEcCceE
Q psy5231 9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC-----------EKILIDRLMQKVNEGKIDIKLKHIV 77 (148)
Q Consensus 9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-----------~~~~~~~l~~~l~~~~v~i~~~~~v 77 (148)
..||+| +|||+|++|+.+|..|++.|++||++++.+.+.+ ..++.++..+.++..|+++++++.+
T Consensus 304 ~~gkkV----aVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~v 379 (944)
T PRK12779 304 AVKPPI----AVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVV 379 (944)
T ss_pred CCCCeE----EEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEe
Confidence 346666 9999999999999999999999999999765432 2345555556677899999988765
No 87
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.30 E-value=4.2e-06 Score=66.71 Aligned_cols=33 Identities=24% Similarity=0.440 Sum_probs=25.2
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
+|+|||||++|+-+|..+++.|.+|+|+|+.++
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~ 34 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKR 34 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSS
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcc
Confidence 459999999999999999999999999999653
No 88
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.30 E-value=3.8e-06 Score=68.01 Aligned_cols=62 Identities=21% Similarity=0.273 Sum_probs=49.0
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC-----------chHHHHHHHHhHHhcCCcEEEcCceEE
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR-----------CEKILIDRLMQKVNEGKIDIKLKHIVH 78 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~-----------~~~~~~~~l~~~l~~~~v~i~~~~~v~ 78 (148)
+|+|||+|++|+.+|..|++.|.+|+++++.+.+. ...+..++..+.+++.|++++.++.+.
T Consensus 143 ~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~ 215 (467)
T TIGR01318 143 RVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVG 215 (467)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeC
Confidence 34999999999999999999999999999876542 123444555556668899999998773
No 89
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.27 E-value=4.6e-06 Score=67.26 Aligned_cols=63 Identities=22% Similarity=0.266 Sum_probs=50.1
Q ss_pred cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC-----------chHHHHHHHHhHHhcCCcEEEcCceE
Q psy5231 15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR-----------CEKILIDRLMQKVNEGKIDIKLKHIV 77 (148)
Q Consensus 15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~-----------~~~~~~~~l~~~l~~~~v~i~~~~~v 77 (148)
+++|+|||||+.|+++|..|++.|.+|+++++.+.+. ...++.....+.+++.|+++++++.+
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v 213 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEV 213 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEE
Confidence 3455999999999999999999999999999876542 12345556666677889999988875
No 90
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.25 E-value=3.5e-06 Score=73.91 Aligned_cols=61 Identities=18% Similarity=0.257 Sum_probs=49.3
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc-----------hHHHHHHHHhHHhcCCcEEEcCceE
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC-----------EKILIDRLMQKVNEGKIDIKLKHIV 77 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-----------~~~~~~~l~~~l~~~~v~i~~~~~v 77 (148)
+|+|||||++|+.+|..|++.|.+|+++++.+.+.+ ..++.++..+.|++.||++++++.+
T Consensus 432 kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~v 503 (1006)
T PRK12775 432 KVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVI 503 (1006)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCcc
Confidence 449999999999999999999999999998765422 2355666666777899999988654
No 91
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.25 E-value=4.4e-06 Score=67.31 Aligned_cols=62 Identities=18% Similarity=0.225 Sum_probs=48.1
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC-----------chHHHHHHHHhHHhcCCcEEEcCceE
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR-----------CEKILIDRLMQKVNEGKIDIKLKHIV 77 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~-----------~~~~~~~~l~~~l~~~~v~i~~~~~v 77 (148)
++|+|||+|+.|+.+|..|++.|++|+++++.+.+. ...+..+...+.+++.|+++++++.+
T Consensus 134 ~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v 206 (449)
T TIGR01316 134 KKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLV 206 (449)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCcc
Confidence 345999999999999999999999999999865431 12344455555666789999988755
No 92
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.25 E-value=5.6e-06 Score=67.08 Aligned_cols=63 Identities=25% Similarity=0.360 Sum_probs=48.7
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc-----------hHHHHHHHHhHHhcCCcEEEcCceEE
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC-----------EKILIDRLMQKVNEGKIDIKLKHIVH 78 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-----------~~~~~~~l~~~l~~~~v~i~~~~~v~ 78 (148)
++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.+ ..+......+.+++.|+++++++.+.
T Consensus 144 ~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~ 217 (471)
T PRK12810 144 KKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVG 217 (471)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEEC
Confidence 3449999999999999999999999999998765421 22344444455667899999988763
No 93
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.23 E-value=4.5e-06 Score=70.06 Aligned_cols=62 Identities=19% Similarity=0.254 Sum_probs=48.4
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC-----------chHHHHHHHHhHHhcCCcEEEcCceE
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR-----------CEKILIDRLMQKVNEGKIDIKLKHIV 77 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~-----------~~~~~~~~l~~~l~~~~v~i~~~~~v 77 (148)
++|+|||+|++|+.+|..|++.|++|+++++.+.+. .+....+...+.++..|+++++++.+
T Consensus 311 kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v 383 (639)
T PRK12809 311 EKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEI 383 (639)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCcc
Confidence 334999999999999999999999999999977542 12334444445566789999998876
No 94
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=98.23 E-value=3.5e-06 Score=67.97 Aligned_cols=67 Identities=24% Similarity=0.233 Sum_probs=54.1
Q ss_pred CcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc-----------hHHHHHHHHhHHhcCCcEEEcCceEE
Q psy5231 12 KPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC-----------EKILIDRLMQKVNEGKIDIKLKHIVH 78 (148)
Q Consensus 12 k~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-----------~~~~~~~l~~~l~~~~v~i~~~~~v~ 78 (148)
+...++|+|||+|+.|+.+|..|++.|++||++++.++..+ ..+..++..+.|++.|++|+.++++-
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG 197 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVG 197 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceEC
Confidence 34445559999999999999999999999999999766432 23566677777888999999998773
No 95
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.23 E-value=6.6e-06 Score=66.95 Aligned_cols=62 Identities=21% Similarity=0.342 Sum_probs=48.9
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC-----------chHHHHHHHHhHHhcCCcEEEcCceEE
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR-----------CEKILIDRLMQKVNEGKIDIKLKHIVH 78 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~-----------~~~~~~~~l~~~l~~~~v~i~~~~~v~ 78 (148)
+++|||+|++|+.+|..|++.|.+|+++++.+.+. .......+..+.+++.||++++++.+.
T Consensus 145 ~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~ 217 (485)
T TIGR01317 145 KVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIG 217 (485)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeC
Confidence 44999999999999999999999999999876532 123445455556678899999998774
No 96
>PRK12831 putative oxidoreductase; Provisional
Probab=98.21 E-value=5.9e-06 Score=66.87 Aligned_cols=62 Identities=16% Similarity=0.238 Sum_probs=48.0
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc------------hHHHHHHHHhHHhcCCcEEEcCceE
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC------------EKILIDRLMQKVNEGKIDIKLKHIV 77 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~------------~~~~~~~l~~~l~~~~v~i~~~~~v 77 (148)
++|+|||||+.|+.+|..|++.|++|+++++.+.+.+ .+.+..+..+.+++.|+++++++.+
T Consensus 141 ~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v 214 (464)
T PRK12831 141 KKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVV 214 (464)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEE
Confidence 3449999999999999999999999999998654311 1224455556677889999998866
No 97
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.21 E-value=1e-05 Score=63.64 Aligned_cols=68 Identities=21% Similarity=0.367 Sum_probs=55.0
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc--------------------------------------------
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC-------------------------------------------- 52 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-------------------------------------------- 52 (148)
+|+|||||++|+-+|..+++.|++|+|+++.+++..
T Consensus 5 dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~d~ 84 (408)
T COG2081 5 DVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPEDF 84 (408)
T ss_pred eEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHHHH
Confidence 459999999999999999999999999998543200
Q ss_pred -------------------------hHHHHHHHHhHHhcCCcEEEcCceEEEEecCC
Q psy5231 53 -------------------------EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN 84 (148)
Q Consensus 53 -------------------------~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~ 84 (148)
...+++.+...+++.||+++++++|.++..++
T Consensus 85 i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~ 141 (408)
T COG2081 85 IDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD 141 (408)
T ss_pred HHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC
Confidence 01455667777888999999999999988663
No 98
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.21 E-value=7e-06 Score=69.08 Aligned_cols=62 Identities=23% Similarity=0.253 Sum_probs=48.3
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc-----------hHHHHHHHHhHHhcCCcEEEcCceE
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC-----------EKILIDRLMQKVNEGKIDIKLKHIV 77 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-----------~~~~~~~l~~~l~~~~v~i~~~~~v 77 (148)
++|+|||+|++|+.+|..|++.|.+|+++++.+.+.+ ..+...+..+.+++.|+++++++.+
T Consensus 328 ~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v 400 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEV 400 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEe
Confidence 3449999999999999999999999999998765421 2344444455566789999998876
No 99
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.17 E-value=8.5e-06 Score=71.07 Aligned_cols=64 Identities=23% Similarity=0.304 Sum_probs=49.0
Q ss_pred cCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc-----------hHHHHHHHHhHHhcCCcEEEcCceE
Q psy5231 10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC-----------EKILIDRLMQKVNEGKIDIKLKHIV 77 (148)
Q Consensus 10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-----------~~~~~~~l~~~l~~~~v~i~~~~~v 77 (148)
.+|+| +|||||++|+.+|..|++.|.+|+|+++.+.+.+ ..+...+-.+.+++.||++++++.+
T Consensus 538 tgKkV----aIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V 612 (1019)
T PRK09853 538 SRKKV----AVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP 612 (1019)
T ss_pred CCCcE----EEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee
Confidence 35555 9999999999999999999999999998765422 1233333344556789999999877
No 100
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.15 E-value=8.3e-06 Score=65.30 Aligned_cols=68 Identities=21% Similarity=0.309 Sum_probs=49.1
Q ss_pred eEEEEcCchHHHHHHHHHhhcC--CeEEEEEeCCCCC-----------c--h--HHHHHHHHhHHhcCCcEEEcCceEEE
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIA--KKVTLIHRNEKLR-----------C--E--KILIDRLMQKVNEGKIDIKLKHIVHK 79 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~~-----------~--~--~~~~~~l~~~l~~~~v~i~~~~~v~~ 79 (148)
+|+|||||+.|+.+|..|++.+ .+|+||++.+.+. . . .+...+..+.+++.|++++.++.+.+
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~ 81 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVVK 81 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEEE
Confidence 4599999999999999999875 4899999876531 0 0 11222233455578999998989988
Q ss_pred EecCC
Q psy5231 80 IIGNN 84 (148)
Q Consensus 80 i~~~~ 84 (148)
+..+.
T Consensus 82 id~~~ 86 (444)
T PRK09564 82 VDAKN 86 (444)
T ss_pred EECCC
Confidence 86543
No 101
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.15 E-value=2.1e-05 Score=58.99 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=29.7
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||||++|+-+|..|++.|.+|+++++..
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 45999999999999999999999999999864
No 102
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.15 E-value=1.7e-05 Score=65.00 Aligned_cols=68 Identities=18% Similarity=0.274 Sum_probs=52.7
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC--CCC--------------CchHHHHHHHHhHHhcCCcEEEcCceEEE
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN--EKL--------------RCEKILIDRLMQKVNEGKIDIKLKHIVHK 79 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~--~~~--------------~~~~~~~~~l~~~l~~~~v~i~~~~~v~~ 79 (148)
.+|+|||||+.|+.+|..+++.|.+|++++.. ..+ ...+.+.+.+.+++++.|+++++++++.+
T Consensus 213 ~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~ 292 (515)
T TIGR03140 213 YDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRAKK 292 (515)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEEEE
Confidence 45699999999999999999999999999641 111 11245666777777788999999999988
Q ss_pred EecC
Q psy5231 80 IIGN 83 (148)
Q Consensus 80 i~~~ 83 (148)
+..+
T Consensus 293 I~~~ 296 (515)
T TIGR03140 293 IETE 296 (515)
T ss_pred EEec
Confidence 8644
No 103
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.15 E-value=5.3e-06 Score=49.75 Aligned_cols=33 Identities=30% Similarity=0.609 Sum_probs=29.6
Q ss_pred EEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc
Q psy5231 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC 52 (148)
Q Consensus 20 ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~ 52 (148)
|||+|.+|+.+|..|++.|.+|+|+|+.+.+.+
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG 33 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGG 33 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSG
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCc
Confidence 799999999999999999999999999887654
No 104
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.13 E-value=1.6e-05 Score=61.99 Aligned_cols=65 Identities=14% Similarity=0.131 Sum_probs=48.0
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc-----------hHHHHHHHHhHHhcCCcEEEcCceEEEE
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC-----------EKILIDRLMQKVNEGKIDIKLKHIVHKI 80 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-----------~~~~~~~l~~~l~~~~v~i~~~~~v~~i 80 (148)
++|+|||+|++|+++|..|++.|.+|+++++.+.+.+ ..+......+.+.+.|++++.++.+..+
T Consensus 19 ~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~ 94 (352)
T PRK12770 19 KKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCG 94 (352)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeec
Confidence 4459999999999999999999999999998765421 1122233334455679999998877543
No 105
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.13 E-value=2.1e-05 Score=64.42 Aligned_cols=67 Identities=19% Similarity=0.236 Sum_probs=53.1
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC--CCC--------------CchHHHHHHHHhHHhcCCcEEEcCceEEEE
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN--EKL--------------RCEKILIDRLMQKVNEGKIDIKLKHIVHKI 80 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~--~~~--------------~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i 80 (148)
+|+|||||+.|+.+|..+++.|.+|+++++. ... .....+.+.+.+++++.|+++++++++.++
T Consensus 213 dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I 292 (517)
T PRK15317 213 DVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRASKL 292 (517)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEEEE
Confidence 5599999999999999999999999999752 000 012456677777777889999999999888
Q ss_pred ecC
Q psy5231 81 IGN 83 (148)
Q Consensus 81 ~~~ 83 (148)
..+
T Consensus 293 ~~~ 295 (517)
T PRK15317 293 EPA 295 (517)
T ss_pred Eec
Confidence 654
No 106
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.12 E-value=2.3e-05 Score=58.83 Aligned_cols=64 Identities=19% Similarity=0.265 Sum_probs=48.5
Q ss_pred EEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc----------------------------------------hHHHH
Q psy5231 18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC----------------------------------------EKILI 57 (148)
Q Consensus 18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~----------------------------------------~~~~~ 57 (148)
|+|||||++|+-+|..|++.|.+|+++++...+.+ ...+.
T Consensus 28 VvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~~l~ 107 (257)
T PRK04176 28 VAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSVEAA 107 (257)
T ss_pred EEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHHHHH
Confidence 49999999999999999999999999998644311 01233
Q ss_pred HHHHhHHhcCCcEEEcCceEEEEe
Q psy5231 58 DRLMQKVNEGKIDIKLKHIVHKII 81 (148)
Q Consensus 58 ~~l~~~l~~~~v~i~~~~~v~~i~ 81 (148)
..+.++.++.|+++++++.+.++.
T Consensus 108 ~~L~~~A~~~Gv~I~~~t~V~dl~ 131 (257)
T PRK04176 108 AKLAAAAIDAGAKIFNGVSVEDVI 131 (257)
T ss_pred HHHHHHHHHcCCEEEcCceeceee
Confidence 345555556899999998887764
No 107
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.12 E-value=4.3e-05 Score=61.61 Aligned_cols=47 Identities=26% Similarity=0.116 Sum_probs=36.8
Q ss_pred CeEEecCCCCcccccCCCCCeEEecccCccc--c-c----hhHHHHHHHHHHHHHHHHh
Q psy5231 95 GYIKTKLNKKTGYTSTNISGVFCRWRCTRLY--F-I----DKQLLALGSGCMAALDAQR 146 (148)
Q Consensus 95 g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~--~-~----~~~~~A~~~G~~aA~~i~~ 146 (148)
|.|.||.+ .+|++|++||+|.|+... + . ..+..++--|+.||.+|..
T Consensus 342 GGI~vD~~-----GrTsi~gLYAiGEvA~TGlHGANRLASNSLLE~vV~g~~aA~~i~~ 395 (518)
T COG0029 342 GGIAVDAN-----GRTSIPGLYAIGEVACTGLHGANRLASNSLLECLVFGKRAAEDIAG 395 (518)
T ss_pred ccEEECCC-----CcccCcccEEeeeecccccccchhhhhhhHHHHHHHHHHHHHHhhc
Confidence 78999999 999999999999997542 1 1 2456677778888888864
No 108
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.11 E-value=1.5e-05 Score=68.13 Aligned_cols=62 Identities=19% Similarity=0.207 Sum_probs=47.8
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc-----------hHHHHHHHHhHHhcCCcEEEcCceE
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC-----------EKILIDRLMQKVNEGKIDIKLKHIV 77 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-----------~~~~~~~l~~~l~~~~v~i~~~~~v 77 (148)
++|+|||||+.|+.+|..|++.|++|+++++.+.+.+ ..+..++..+.+++.||++++++.+
T Consensus 432 ~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v 504 (752)
T PRK12778 432 KKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIV 504 (752)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEE
Confidence 3449999999999999999999999999998554321 2334445455666789999998765
No 109
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.10 E-value=1.3e-05 Score=67.44 Aligned_cols=62 Identities=19% Similarity=0.318 Sum_probs=47.8
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC-----------chHHHHHHHHhHHhcCCcEEEcCceE
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR-----------CEKILIDRLMQKVNEGKIDIKLKHIV 77 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~-----------~~~~~~~~l~~~l~~~~v~i~~~~~v 77 (148)
++|+|||+|+.|+.+|..|++.|++|+++++.+.+. ....+.+...+.+++.|+++++++.+
T Consensus 194 k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v 266 (652)
T PRK12814 194 KKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVF 266 (652)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcc
Confidence 344999999999999999999999999999876542 12334444455566789999988764
No 110
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.08 E-value=2.6e-05 Score=63.15 Aligned_cols=32 Identities=25% Similarity=0.365 Sum_probs=29.3
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||+|++|+-+|..|.+.|.+|+++|+.+
T Consensus 12 ~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~ 43 (461)
T PLN02172 12 HVAVIGAGAAGLVAARELRREGHTVVVFEREK 43 (461)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCeEEEEecCC
Confidence 34999999999999999999999999999854
No 111
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.07 E-value=3.9e-05 Score=57.51 Aligned_cols=65 Identities=22% Similarity=0.269 Sum_probs=49.3
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc----------------------------------------hHHH
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC----------------------------------------EKIL 56 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~----------------------------------------~~~~ 56 (148)
+|+|||||++|+-+|..|++.|.+|.++++...+.. ..++
T Consensus 23 DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~el 102 (254)
T TIGR00292 23 DVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSAEF 102 (254)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHHHH
Confidence 349999999999999999999999999999654310 0123
Q ss_pred HHHHHhHHhcCCcEEEcCceEEEEe
Q psy5231 57 IDRLMQKVNEGKIDIKLKHIVHKII 81 (148)
Q Consensus 57 ~~~l~~~l~~~~v~i~~~~~v~~i~ 81 (148)
.+.|.++..+.|++++.++.+.++.
T Consensus 103 ~~~L~~~a~e~GV~I~~~t~V~dli 127 (254)
T TIGR00292 103 ISTLASKALQAGAKIFNGTSVEDLI 127 (254)
T ss_pred HHHHHHHHHHcCCEEECCcEEEEEE
Confidence 3445455556899999999888765
No 112
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.04 E-value=7.2e-06 Score=58.61 Aligned_cols=34 Identities=41% Similarity=0.507 Sum_probs=29.3
Q ss_pred cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
.++|+|||+|.+|+++|..|++.|++|+++.|++
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 4778999999999999999999999999999975
No 113
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.03 E-value=2.7e-05 Score=63.45 Aligned_cols=61 Identities=13% Similarity=0.135 Sum_probs=44.0
Q ss_pred eEEEEcCchHHHHHHHHHhh--cCCeEEEEEeCCCCCc--------h-H---HHHHHHHhHHhcCCcEEEcCceE
Q psy5231 17 FTDVIGGGNTAVEEALYLSN--IAKKVTLIHRNEKLRC--------E-K---ILIDRLMQKVNEGKIDIKLKHIV 77 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~~~--------~-~---~~~~~l~~~l~~~~v~i~~~~~v 77 (148)
+|+|||+|+.|+.+|..|++ .|.+|+|+++.+.+.+ + + .......+.++..+++++.+..+
T Consensus 28 ~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~v 102 (491)
T PLN02852 28 HVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTL 102 (491)
T ss_pred cEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEE
Confidence 34999999999999999987 7999999999765421 1 1 12223333445678998877655
No 114
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.98 E-value=2.6e-05 Score=63.28 Aligned_cols=64 Identities=16% Similarity=0.009 Sum_probs=47.8
Q ss_pred hhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEE
Q psy5231 6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVH 78 (148)
Q Consensus 6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~ 78 (148)
+....++++ +|+|+|.+|+++|..|.+.|.+|+++++.+.. ....+.+.|++.|++++++..+.
T Consensus 11 ~~~~~~~~v----~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~-----~~~~~~~~l~~~gv~~~~~~~~~ 74 (480)
T PRK01438 11 HSDWQGLRV----VVAGLGVSGFAAADALLELGARVTVVDDGDDE-----RHRALAAILEALGATVRLGPGPT 74 (480)
T ss_pred ccCcCCCEE----EEECCCHHHHHHHHHHHHCCCEEEEEeCCchh-----hhHHHHHHHHHcCCEEEECCCcc
Confidence 345567777 99999999999999999999999999876431 12223334446899999876553
No 115
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.98 E-value=2.7e-05 Score=68.12 Aligned_cols=59 Identities=20% Similarity=0.287 Sum_probs=45.1
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc-----------hHHHHHHHHhHHhcCCcEEEcCc
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC-----------EKILIDRLMQKVNEGKIDIKLKH 75 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-----------~~~~~~~l~~~l~~~~v~i~~~~ 75 (148)
+|+|||||+.|+.+|..|++.|.+|||+++.+.+.+ ..+..++..+.+++.||++++++
T Consensus 539 kVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~ 608 (1012)
T TIGR03315 539 KVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGC 608 (1012)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEec
Confidence 449999999999999999999999999998755422 12344444455567899998874
No 116
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.94 E-value=5.1e-05 Score=62.84 Aligned_cols=64 Identities=27% Similarity=0.388 Sum_probs=47.3
Q ss_pred cCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc-----------hHHHHHHHHhHHhcCCcEEEcCceE
Q psy5231 10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC-----------EKILIDRLMQKVNEGKIDIKLKHIV 77 (148)
Q Consensus 10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-----------~~~~~~~l~~~l~~~~v~i~~~~~v 77 (148)
.|++| +|||+|++|+.+|..|++.|.+|+++++.+.+.+ ..+..+.-.+.+++.|++++.++.+
T Consensus 136 ~g~~V----~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~ 210 (564)
T PRK12771 136 TGKRV----AVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRV 210 (564)
T ss_pred CCCEE----EEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 45666 9999999999999999999999999998665421 1222332233445689999988776
No 117
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.93 E-value=1.4e-05 Score=63.87 Aligned_cols=31 Identities=29% Similarity=0.297 Sum_probs=28.8
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+|+|||||.+|+++|..|++.|.+|+|++++
T Consensus 4 dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~r 34 (436)
T PRK05335 4 PVNVIGAGLAGSEAAWQLAKRGVPVELYEMR 34 (436)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEEcc
Confidence 4599999999999999999999999999963
No 118
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.92 E-value=1.1e-05 Score=65.40 Aligned_cols=45 Identities=20% Similarity=0.182 Sum_probs=40.1
Q ss_pred chhhhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231 2 QYEFGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50 (148)
Q Consensus 2 ~~~~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 50 (148)
+|+....++||+| +|||+|.+|+|+|.+|+..+++|++++|+..+
T Consensus 195 ~yr~~~~~~gk~V----vVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~ 239 (461)
T PLN02172 195 NYRVPDPFKNEVV----VVIGNFASGADISRDIAKVAKEVHIASRASES 239 (461)
T ss_pred ccCCccccCCCEE----EEECCCcCHHHHHHHHHHhCCeEEEEEeeccc
Confidence 4677777889999 99999999999999999999999999997543
No 119
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.87 E-value=9.8e-05 Score=52.69 Aligned_cols=66 Identities=18% Similarity=0.287 Sum_probs=44.8
Q ss_pred EEEcCchHHHHHHHHHhhcCCe-EEEEEeCCCCCc---------------------------------------------
Q psy5231 19 DVIGGGNTAVEEALYLSNIAKK-VTLIHRNEKLRC--------------------------------------------- 52 (148)
Q Consensus 19 ~ViGgG~~g~e~A~~l~~~g~~-Vtlv~~~~~~~~--------------------------------------------- 52 (148)
+|||||++|+-+|..|.+.|.+ |+++++.+.+.+
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 5999999999999999999999 999998533200
Q ss_pred hHHHHHHHHhHHhcCCcEEEcCceEEEEecCC
Q psy5231 53 EKILIDRLMQKVNEGKIDIKLKHIVHKIIGNN 84 (148)
Q Consensus 53 ~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~ 84 (148)
.+++.+.+....++.++++.++++|.++..++
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~ 112 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDG 112 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEET
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEec
Confidence 01233555555667899999999999987654
No 120
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.86 E-value=2.7e-05 Score=59.59 Aligned_cols=34 Identities=26% Similarity=0.399 Sum_probs=29.3
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 50 (148)
+|+|||||+.|+-+|..|++.|.+|+++++.+.+
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 4699999999999999999999999999997654
No 121
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=97.84 E-value=0.00013 Score=53.32 Aligned_cols=32 Identities=28% Similarity=0.536 Sum_probs=26.6
Q ss_pred EEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
|+|+|+|++|+-+|..|++.|.+|.++|++..
T Consensus 20 V~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~ 51 (230)
T PF01946_consen 20 VAIVGAGPAGLTAAYYLAKAGLKVAVIERKLS 51 (230)
T ss_dssp EEEE--SHHHHHHHHHHHHHTS-EEEEESSSS
T ss_pred EEEECCChhHHHHHHHHHHCCCeEEEEecCCC
Confidence 49999999999999999999999999998643
No 122
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.83 E-value=0.00014 Score=60.25 Aligned_cols=64 Identities=14% Similarity=0.224 Sum_probs=48.4
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc------------------hHHHHHHHHhHHhcCCcEEEcCceEE
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC------------------EKILIDRLMQKVNEGKIDIKLKHIVH 78 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~------------------~~~~~~~l~~~l~~~~v~i~~~~~v~ 78 (148)
+|+|||||+.|+.+|..|++.|.+|+|+++.. +.+ ...+.+.+.+++++.|++++ ++.+.
T Consensus 6 DVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~ 83 (555)
T TIGR03143 6 DLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEVL 83 (555)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEEE
Confidence 45999999999999999999999999999742 211 12445566666667899986 56777
Q ss_pred EEec
Q psy5231 79 KIIG 82 (148)
Q Consensus 79 ~i~~ 82 (148)
.+..
T Consensus 84 ~i~~ 87 (555)
T TIGR03143 84 DVDF 87 (555)
T ss_pred EEEe
Confidence 7654
No 123
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.83 E-value=2.5e-05 Score=62.57 Aligned_cols=33 Identities=30% Similarity=0.340 Sum_probs=30.0
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
+|+|||||.+|+++|..|++.|.+|+|+++++.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 469999999999999999999999999997544
No 124
>PRK13984 putative oxidoreductase; Provisional
Probab=97.83 E-value=0.0001 Score=61.56 Aligned_cols=64 Identities=20% Similarity=0.282 Sum_probs=49.0
Q ss_pred cCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc-----------hHHHHHHHHhHHhcCCcEEEcCceE
Q psy5231 10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC-----------EKILIDRLMQKVNEGKIDIKLKHIV 77 (148)
Q Consensus 10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-----------~~~~~~~l~~~l~~~~v~i~~~~~v 77 (148)
.++++ +|||+|+.|+.+|..|++.|.+|+++++.+...+ ......+..+.+++.|+++++++.+
T Consensus 282 ~~~~v----~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v 356 (604)
T PRK13984 282 KNKKV----AIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRV 356 (604)
T ss_pred CCCeE----EEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEe
Confidence 45555 9999999999999999999999999998764321 1233344445566789999999877
No 125
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.79 E-value=3.7e-05 Score=61.38 Aligned_cols=35 Identities=29% Similarity=0.484 Sum_probs=31.2
Q ss_pred eEEEEcCchHHHHHHHHHhhcC--CeEEEEEeCCCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIA--KKVTLIHRNEKLR 51 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~~ 51 (148)
+|+|||||.+|+-+|..|++.| .+|+|+|.++++.
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~G 38 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLG 38 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCc
Confidence 5699999999999999999987 8999999877653
No 126
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.78 E-value=2.8e-05 Score=62.71 Aligned_cols=44 Identities=32% Similarity=0.271 Sum_probs=40.4
Q ss_pred chhhhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 2 QYEFGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 2 ~~~~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
+|.+...+.||+| +|||+|.+|+++|..|++.|++||++.|++.
T Consensus 166 ~~~~~~~~~GKrV----~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~ 209 (443)
T COG2072 166 DWPNPEDLRGKRV----LVIGAGASAVDIAPELAEVGASVTLSQRSPP 209 (443)
T ss_pred cCCCccccCCCeE----EEECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence 5777778999999 9999999999999999999999999999754
No 127
>KOG0029|consensus
Probab=97.76 E-value=4e-05 Score=62.64 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=33.0
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC 52 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~ 52 (148)
+|+|||+|.+|+-+|..|.+.|.+|+++|-++++++
T Consensus 17 ~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 17 KVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG 52 (501)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence 459999999999999999999999999999887754
No 128
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.76 E-value=3.6e-05 Score=63.41 Aligned_cols=44 Identities=39% Similarity=0.381 Sum_probs=37.2
Q ss_pred chhhhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 2 QYEFGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 2 ~~~~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
+|.....++||+| +|||+|.+|+|+|.+|+..+++|++..|+..
T Consensus 174 ~yr~~~~f~gKrV----lVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~ 217 (531)
T PF00743_consen 174 DYRDPEPFKGKRV----LVVGGGNSGADIAVELSRVAKKVYLSTRRGA 217 (531)
T ss_dssp G--TGGGGTTSEE----EEESSSHHHHHHHHHHTTTSCCEEEECC---
T ss_pred cCcChhhcCCCEE----EEEeCCHhHHHHHHHHHHhcCCeEEEEeccc
Confidence 6888888999999 9999999999999999999999999988643
No 129
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.76 E-value=0.00014 Score=59.20 Aligned_cols=62 Identities=15% Similarity=0.024 Sum_probs=42.4
Q ss_pred ceEEEEcCchHHHHHHHHHh-hcCCeEEEEEeCCCCCc--------h----HHHHHHHHhHHhcCCcEEEcCceE
Q psy5231 16 IFTDVIGGGNTAVEEALYLS-NIAKKVTLIHRNEKLRC--------E----KILIDRLMQKVNEGKIDIKLKHIV 77 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~-~~g~~Vtlv~~~~~~~~--------~----~~~~~~l~~~l~~~~v~i~~~~~v 77 (148)
++|+|||+|++|+.+|..|. +.|.+|+++++.+.+.+ + ....+.+...+...+++++.+..+
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~V 114 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHV 114 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEe
Confidence 45599999999999999764 67999999999876532 1 122233333344578888755444
No 130
>PRK07233 hypothetical protein; Provisional
Probab=97.75 E-value=4.7e-05 Score=60.35 Aligned_cols=35 Identities=23% Similarity=0.441 Sum_probs=31.8
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR 51 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~ 51 (148)
+|+|||||.+|+-+|..|++.|++|+|+|+.+.+.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~G 35 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLG 35 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCC
Confidence 35999999999999999999999999999987654
No 131
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.74 E-value=0.00018 Score=57.86 Aligned_cols=31 Identities=29% Similarity=0.279 Sum_probs=28.9
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+|+|||||+.|+.+|..+++.|++|+|+++.
T Consensus 4 DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~ 34 (446)
T TIGR01424 4 DLFVIGAGSGGVRAARLAANHGAKVAIAEEP 34 (446)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 4599999999999999999999999999973
No 132
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.72 E-value=6e-05 Score=59.69 Aligned_cols=34 Identities=26% Similarity=0.348 Sum_probs=31.1
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 50 (148)
+|+|||||+.|+-+|..|++.|.+|+++|+.+.+
T Consensus 4 ~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~ 37 (400)
T PRK06475 4 SPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL 37 (400)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 3499999999999999999999999999997654
No 133
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=97.70 E-value=7.5e-05 Score=57.20 Aligned_cols=31 Identities=29% Similarity=0.385 Sum_probs=29.5
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+|+|||||.+|+-+|..|++.|.+|+|+++.
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 4699999999999999999999999999996
No 134
>PRK09126 hypothetical protein; Provisional
Probab=97.70 E-value=0.00012 Score=57.61 Aligned_cols=32 Identities=34% Similarity=0.373 Sum_probs=30.0
Q ss_pred EEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
|+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus 6 viIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 6 IVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred EEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 49999999999999999999999999999764
No 135
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.69 E-value=6.4e-05 Score=55.05 Aligned_cols=33 Identities=24% Similarity=0.494 Sum_probs=30.0
Q ss_pred EEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231 18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50 (148)
Q Consensus 18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 50 (148)
|+|+|+|++|+-+|.+|++.|.+|.++||+-.+
T Consensus 33 ViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~ 65 (262)
T COG1635 33 VIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSF 65 (262)
T ss_pred EEEECcCcchHHHHHHHHhCCceEEEEEeeccc
Confidence 499999999999999999999999999996443
No 136
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.69 E-value=5.2e-05 Score=66.02 Aligned_cols=47 Identities=13% Similarity=0.057 Sum_probs=41.3
Q ss_pred CeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHHHHHHHHhh
Q psy5231 95 GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRY 147 (148)
Q Consensus 95 g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~ 147 (148)
|+|.+|.. ++|++||+||+|||+..+ ..++..++..|++|+.++.+|
T Consensus 362 GGi~vd~~-----~~T~v~GLfAaGE~a~~~-~nsl~~a~v~G~~Ag~~a~~~ 408 (897)
T PRK13800 362 SGVWVDEH-----ARTTVPGLYAAGDLACVP-HNYMIGAFVFGDLAGAHAAGT 408 (897)
T ss_pred ceEEecCC-----CcccCCCeEechhccCcc-hhhhhhHHHhHHHHHHHHHHH
Confidence 78999999 999999999999997654 468888999999999998765
No 137
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.69 E-value=0.00026 Score=62.32 Aligned_cols=67 Identities=10% Similarity=0.114 Sum_probs=50.2
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc-------------hHHHHHHHHhHHhcC-CcEEEcCceEEEEe
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC-------------EKILIDRLMQKVNEG-KIDIKLKHIVHKII 81 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-------------~~~~~~~l~~~l~~~-~v~i~~~~~v~~i~ 81 (148)
.+|+|||||+.|+.+|..+++.|.+|+|+++.+.+.+ ..++...+.++++.. ++.+++++++..+.
T Consensus 164 ~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i~ 243 (985)
T TIGR01372 164 CDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGYY 243 (985)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEEe
Confidence 3569999999999999999999999999998654421 123334555566555 59999988887664
Q ss_pred c
Q psy5231 82 G 82 (148)
Q Consensus 82 ~ 82 (148)
.
T Consensus 244 ~ 244 (985)
T TIGR01372 244 D 244 (985)
T ss_pred c
Confidence 3
No 138
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.68 E-value=0.00016 Score=57.29 Aligned_cols=67 Identities=15% Similarity=0.230 Sum_probs=46.1
Q ss_pred EEEEcCchHHHHHHHHHhhcCC--eEEEEEeCCCCCc-----hHHHH-----H--H--HHhHHhcCCcEEEcCceEEEEe
Q psy5231 18 TDVIGGGNTAVEEALYLSNIAK--KVTLIHRNEKLRC-----EKILI-----D--R--LMQKVNEGKIDIKLKHIVHKII 81 (148)
Q Consensus 18 v~ViGgG~~g~e~A~~l~~~g~--~Vtlv~~~~~~~~-----~~~~~-----~--~--l~~~l~~~~v~i~~~~~v~~i~ 81 (148)
|+|||||+.|+.+|..|++.+. +|+++++.+.+.. ..... + . -.+.+++.+|+++.++.+..+.
T Consensus 6 vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~~id 85 (396)
T PRK09754 6 IIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIKTLG 85 (396)
T ss_pred EEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEEEEE
Confidence 4999999999999999999876 7999987543321 11110 0 0 0122346799999998888876
Q ss_pred cCC
Q psy5231 82 GNN 84 (148)
Q Consensus 82 ~~~ 84 (148)
.+.
T Consensus 86 ~~~ 88 (396)
T PRK09754 86 RDT 88 (396)
T ss_pred CCC
Confidence 543
No 139
>PRK05868 hypothetical protein; Validated
Probab=97.68 E-value=6.8e-05 Score=58.97 Aligned_cols=35 Identities=23% Similarity=0.276 Sum_probs=31.5
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 50 (148)
++|+|+|||+.|+.+|..|++.|.+|+++|+.+.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 45699999999999999999999999999986543
No 140
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=6.7e-05 Score=60.66 Aligned_cols=36 Identities=22% Similarity=0.309 Sum_probs=32.9
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC 52 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~ 52 (148)
+|+|+|+|..|+.+|.+|++.|++|||+|+++.+.+
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG 37 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG 37 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence 569999999999999999999999999999887643
No 141
>PLN02268 probable polyamine oxidase
Probab=97.67 E-value=7.9e-05 Score=59.55 Aligned_cols=36 Identities=31% Similarity=0.414 Sum_probs=32.5
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC 52 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~ 52 (148)
+|+|||+|.+|+-+|..|.+.|.+|+|+|.++++.+
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GG 37 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGG 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCc
Confidence 569999999999999999999999999998877644
No 142
>PRK06847 hypothetical protein; Provisional
Probab=97.67 E-value=7.6e-05 Score=58.27 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=30.2
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
+|+|||||++|+-+|..|++.|.+|+++|+.+.
T Consensus 6 ~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 6 KVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 459999999999999999999999999998653
No 143
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.66 E-value=0.00017 Score=57.92 Aligned_cols=69 Identities=14% Similarity=0.163 Sum_probs=47.9
Q ss_pred ceEEEEcCchHHHHHHHHHhhc--CCeEEEEEeCCCCCch----HHH-------HHH-H---HhHH-hcCCcEEEcCceE
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNI--AKKVTLIHRNEKLRCE----KIL-------IDR-L---MQKV-NEGKIDIKLKHIV 77 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~~~~----~~~-------~~~-l---~~~l-~~~~v~i~~~~~v 77 (148)
++|+|||||..|+.+|..|++. +.+|+|+++.+.+... +.. .+. + .+.+ ++.|++++.+++|
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V 81 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEV 81 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEE
Confidence 3569999999999999999876 5789999987543110 110 011 1 1222 3579999989999
Q ss_pred EEEecCC
Q psy5231 78 HKIIGNN 84 (148)
Q Consensus 78 ~~i~~~~ 84 (148)
.+|..+.
T Consensus 82 ~~Id~~~ 88 (438)
T PRK13512 82 IAINDER 88 (438)
T ss_pred EEEECCC
Confidence 9987654
No 144
>PRK07236 hypothetical protein; Provisional
Probab=97.65 E-value=7.8e-05 Score=58.71 Aligned_cols=33 Identities=27% Similarity=0.292 Sum_probs=30.3
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
+|+|||||++|+.+|..|++.|.+|+|+|+.+.
T Consensus 8 ~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 8 RAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 459999999999999999999999999998653
No 145
>PRK06753 hypothetical protein; Provisional
Probab=97.65 E-value=7.7e-05 Score=58.25 Aligned_cols=33 Identities=24% Similarity=0.390 Sum_probs=30.5
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
+|+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 469999999999999999999999999998754
No 146
>KOG3851|consensus
Probab=97.65 E-value=0.00061 Score=52.66 Aligned_cols=103 Identities=14% Similarity=0.196 Sum_probs=64.9
Q ss_pred EEEcCchHHHHHHHH-HhhcCC--eEEEEEe--CCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEecCCe--------
Q psy5231 19 DVIGGGNTAVEEALY-LSNIAK--KVTLIHR--NEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNT-------- 85 (148)
Q Consensus 19 ~ViGgG~~g~e~A~~-l~~~g~--~Vtlv~~--~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~~~-------- 85 (148)
=.-|+-.-.+-++.. +++.|. ++.++.. -+.+-+-....+.|++..++.+|++-....+.++..++.
T Consensus 196 KCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iFgVk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe~L~ 275 (446)
T KOG3851|consen 196 KCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIFGVKHYADALEKVIQERNITVNYKRNLIEVRTNDRKAVFENLD 275 (446)
T ss_pred ccCCCchhhhhhhHHHHHHhCccccccEEEecCccceecHHHHHHHHHHHHHhcceEeeeccceEEEeccchhhHHHhcC
Confidence 345665666655543 445553 3444433 334434445556666666689999998888888876543
Q ss_pred ------------e--------ec---ceee-c-CCeEEecCCCCccccc-CCCCCeEEecccCccc
Q psy5231 86 ------------V--------TG---QLEM-N-DGYIKTKLNKKTGYTS-TNISGVFCRWRCTRLY 125 (148)
Q Consensus 86 ------------~--------~~---~~~~-~-~g~i~vd~~~~~~~~~-t~~~~vya~GD~~~~~ 125 (148)
+ .+ .-.+ | .||+.||..+ +| +..||||++|||.+.|
T Consensus 276 kPG~t~ei~yslLHv~Ppms~pe~l~~s~~adktGfvdVD~~T----lQs~kypNVFgiGDc~n~P 337 (446)
T KOG3851|consen 276 KPGVTEEIEYSLLHVTPPMSTPEVLANSDLADKTGFVDVDQST----LQSKKYPNVFGIGDCMNLP 337 (446)
T ss_pred CCCceeEEeeeeeeccCCCCChhhhhcCcccCcccceecChhh----hccccCCCceeeccccCCC
Confidence 0 00 1112 3 4999999876 54 5789999999999987
No 147
>PRK08244 hypothetical protein; Provisional
Probab=97.65 E-value=9.8e-05 Score=60.06 Aligned_cols=34 Identities=26% Similarity=0.249 Sum_probs=30.9
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 50 (148)
+|+|||||++|+-+|..|++.|.+|+|+|+.+..
T Consensus 4 dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~ 37 (493)
T PRK08244 4 EVIIIGGGPVGLMLASELALAGVKTCVIERLKET 37 (493)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 4599999999999999999999999999997543
No 148
>PRK06184 hypothetical protein; Provisional
Probab=97.64 E-value=0.0001 Score=60.15 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=30.6
Q ss_pred EEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231 18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50 (148)
Q Consensus 18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 50 (148)
|+|||||++|+-+|..|++.|.+|+|+++.+.+
T Consensus 6 VlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~ 38 (502)
T PRK06184 6 VLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP 38 (502)
T ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 499999999999999999999999999997654
No 149
>PRK08275 putative oxidoreductase; Provisional
Probab=97.64 E-value=8.1e-05 Score=61.57 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=39.4
Q ss_pred CeEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHHHHHHHHhh
Q psy5231 95 GYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRY 147 (148)
Q Consensus 95 g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~ 147 (148)
|.|.+|.. ++|++||+||+|||+..+ ...+..|+..|++|+.++.+|
T Consensus 357 Ggi~~d~~-----~~t~i~gl~a~Ge~~~~~-~~~~~~~~~~G~~a~~~~~~~ 403 (554)
T PRK08275 357 SGVWVNEK-----AETTVPGLYAAGDMASVP-HNYMLGAFTYGWFAGENAAEY 403 (554)
T ss_pred CcEEECCC-----CccCCCCEEECcccCCch-hHHHHHHHHHHHHHHHHHHHH
Confidence 46888988 999999999999996533 357788999999999998766
No 150
>PRK10262 thioredoxin reductase; Provisional
Probab=97.64 E-value=0.00049 Score=52.87 Aligned_cols=65 Identities=20% Similarity=0.295 Sum_probs=43.8
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC---C---------Cc------hHHHHHHHHhHHhcCCcEEEcCceE
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK---L---------RC------EKILIDRLMQKVNEGKIDIKLKHIV 77 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~---~---------~~------~~~~~~~l~~~l~~~~v~i~~~~~v 77 (148)
++|+|||||+.|+.+|..+++.|.+|+++++.+. + +. .+.+.+++.+.....++++..+ .+
T Consensus 7 ~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 85 (321)
T PRK10262 7 SKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD-HI 85 (321)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEee-EE
Confidence 3459999999999999999999999999975321 0 11 1234555665555666776654 34
Q ss_pred EEEe
Q psy5231 78 HKII 81 (148)
Q Consensus 78 ~~i~ 81 (148)
..+.
T Consensus 86 ~~v~ 89 (321)
T PRK10262 86 NKVD 89 (321)
T ss_pred EEEE
Confidence 4443
No 151
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.64 E-value=0.00032 Score=56.15 Aligned_cols=67 Identities=10% Similarity=0.026 Sum_probs=47.1
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCch-------------HHHHHHHHhHHhcCCcEEEcCceEEEEecC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCE-------------KILIDRLMQKVNEGKIDIKLKHIVHKIIGN 83 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-------------~~~~~~l~~~l~~~~v~i~~~~~v~~i~~~ 83 (148)
+|+|||||..|+.+|..|.....+||||++++.+... ......+.+.++..+++++. .+|.+|..+
T Consensus 12 ~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~-~~V~~Id~~ 90 (424)
T PTZ00318 12 NVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLR-AVVYDVDFE 90 (424)
T ss_pred eEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEE-EEEEEEEcC
Confidence 3499999999999999998777899999987654211 12223344555567888874 578787654
Q ss_pred C
Q psy5231 84 N 84 (148)
Q Consensus 84 ~ 84 (148)
.
T Consensus 91 ~ 91 (424)
T PTZ00318 91 E 91 (424)
T ss_pred C
Confidence 3
No 152
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.63 E-value=8.7e-05 Score=58.77 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=30.8
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
.+|+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 3559999999999999999999999999998654
No 153
>PRK07045 putative monooxygenase; Reviewed
Probab=97.63 E-value=9.1e-05 Score=58.28 Aligned_cols=34 Identities=24% Similarity=0.227 Sum_probs=30.8
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 50 (148)
+|+|||||++|+-+|..|++.|.+|+|+|+.+.+
T Consensus 7 ~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 7 DVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred EEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 4599999999999999999999999999986643
No 154
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.62 E-value=9.8e-05 Score=58.12 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=30.3
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
+|+|||||++|+-+|..|++.|.+|+++|+.+.
T Consensus 6 ~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 6 PVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 459999999999999999999999999998654
No 155
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=97.60 E-value=0.0001 Score=58.48 Aligned_cols=32 Identities=34% Similarity=0.443 Sum_probs=30.0
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||||.+|+-+|..|++.|.+|+++++.+
T Consensus 3 ~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 3 HIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 56999999999999999999999999999975
No 156
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.59 E-value=0.00011 Score=59.26 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=30.6
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 50 (148)
+|+|||||+.|+.+|..|++.|++|+++++.+.+
T Consensus 7 DvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~ 40 (461)
T PRK05249 7 DLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNV 40 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCEEEEEeccccc
Confidence 3599999999999999999999999999986544
No 157
>PRK06126 hypothetical protein; Provisional
Probab=97.59 E-value=0.00011 Score=60.50 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=30.8
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 50 (148)
+|+|||||++|+-+|..|++.|.+|+|+|+.+..
T Consensus 9 ~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~ 42 (545)
T PRK06126 9 PVLIVGGGPVGLALALDLGRRGVDSILVERKDGT 42 (545)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 4599999999999999999999999999987543
No 158
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.58 E-value=0.00012 Score=58.87 Aligned_cols=35 Identities=26% Similarity=0.501 Sum_probs=31.5
Q ss_pred eEEEEcCchHHHHHHHHHhhc----CCeEEEEEeCCCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNI----AKKVTLIHRNEKLR 51 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~----g~~Vtlv~~~~~~~ 51 (148)
+|+|||||.+|+-+|..|++. |.+|+|+|+++++.
T Consensus 4 ~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~G 42 (462)
T TIGR00562 4 HVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVG 42 (462)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCc
Confidence 459999999999999999998 99999999977653
No 159
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.57 E-value=0.00012 Score=59.65 Aligned_cols=34 Identities=29% Similarity=0.447 Sum_probs=31.1
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 50 (148)
+++|||||..|+-+|..|++.|.+|+|+|+.+..
T Consensus 5 dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~ 38 (487)
T COG1233 5 DVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRV 38 (487)
T ss_pred cEEEECCChhHHHHHHHHHhCCCEEEEEEecCCC
Confidence 4599999999999999999999999999986654
No 160
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=97.57 E-value=0.00011 Score=57.25 Aligned_cols=32 Identities=25% Similarity=0.216 Sum_probs=29.6
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||||.+|+-+|.+|++.|.+|+|+++..
T Consensus 5 dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~ 36 (376)
T PRK11259 5 DVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM 36 (376)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 35999999999999999999999999999864
No 161
>PRK07588 hypothetical protein; Provisional
Probab=97.56 E-value=0.00012 Score=57.65 Aligned_cols=34 Identities=26% Similarity=0.348 Sum_probs=30.7
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 50 (148)
+|+|||||++|+-+|..|++.|.+|+++|+.+.+
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPEL 35 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCc
Confidence 4699999999999999999999999999986543
No 162
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.56 E-value=0.00013 Score=59.25 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=32.3
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR 51 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~ 51 (148)
++|+|||+|..|+-+|..|++.|.+|+++|+.+.+.
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~G 37 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPG 37 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 356999999999999999999999999999987654
No 163
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.56 E-value=0.00012 Score=61.21 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=33.2
Q ss_pred ccCCCCCeEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231 108 TSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148 (148)
Q Consensus 108 ~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l 148 (148)
++|++||+||+|||++.....+...+..+|++|+.++.+++
T Consensus 391 ~~T~v~glyA~Ge~~~~~~~~l~~~s~~~g~~ag~~~~~~~ 431 (608)
T PRK06854 391 RMTTVEGLFAAGDVVGGSPHKFSSGSFAEGRIAAKAAVRYI 431 (608)
T ss_pred cccCCCCEEEeeecCCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999753213567788899999999988763
No 164
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.55 E-value=0.00013 Score=56.99 Aligned_cols=32 Identities=28% Similarity=0.421 Sum_probs=29.9
Q ss_pred EEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
|+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus 2 ViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 33 (385)
T TIGR01988 2 IVIVGGGMVGLALALALARSGLKIALIEATPA 33 (385)
T ss_pred EEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence 59999999999999999999999999999753
No 165
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.55 E-value=0.00012 Score=57.17 Aligned_cols=32 Identities=25% Similarity=0.240 Sum_probs=29.5
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||||.+|+-+|..|++.|.+|+|+++.+
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~ 33 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFD 33 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 46999999999999999999999999999853
No 166
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.55 E-value=0.00021 Score=56.55 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=29.8
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||||++|+-+|..|++.|.+|+|+|+.+
T Consensus 4 dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred cEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 45999999999999999999999999999865
No 167
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.55 E-value=0.00013 Score=57.13 Aligned_cols=32 Identities=34% Similarity=0.470 Sum_probs=29.6
Q ss_pred eEEEEcCchHHHHHHHHHhhcC-CeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIA-KKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~~ 48 (148)
+|+|||||++|+-+|..|++.| .+|+++|+.+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~ 33 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANS 33 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCC
Confidence 3599999999999999999999 9999999864
No 168
>PRK08013 oxidoreductase; Provisional
Probab=97.52 E-value=0.00015 Score=57.40 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=30.1
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
+|+|||||++|+-+|..|++.|.+|+++|+.+.
T Consensus 5 dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 5 DVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred CEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 359999999999999999999999999998654
No 169
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.52 E-value=0.00015 Score=57.02 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=30.0
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
+|+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus 9 dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 9 DIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 349999999999999999999999999998653
No 170
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.51 E-value=0.00017 Score=56.64 Aligned_cols=32 Identities=28% Similarity=0.381 Sum_probs=29.6
Q ss_pred EEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
|+|||||++|+-+|..|++.|.+|+++|+.+.
T Consensus 8 v~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07608 8 VVVVGGGLVGASLALALAQSGLRVALLAPRAP 39 (388)
T ss_pred EEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 49999999999999999999999999998644
No 171
>KOG1399|consensus
Probab=97.50 E-value=0.00015 Score=58.56 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=31.3
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 50 (148)
++|+|||+|++|+-+|..|.+.|.+|+++||.+.+
T Consensus 7 ~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~i 41 (448)
T KOG1399|consen 7 KDVAVIGAGPAGLAAARELLREGHEVVVFERTDDI 41 (448)
T ss_pred CceEEECcchHHHHHHHHHHHCCCCceEEEecCCc
Confidence 44599999999999999999999999999996543
No 172
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=97.50 E-value=0.00018 Score=57.71 Aligned_cols=32 Identities=25% Similarity=0.327 Sum_probs=29.6
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||||++|+-+|..|++.|.+|+++|+.+
T Consensus 7 DViIVGaGpAG~~aA~~La~~G~~V~llEr~~ 38 (428)
T PRK10157 7 DAIIVGAGLAGSVAALVLAREGAQVLVIERGN 38 (428)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 45999999999999999999999999999864
No 173
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.50 E-value=0.00018 Score=59.37 Aligned_cols=67 Identities=16% Similarity=0.178 Sum_probs=48.4
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCch------------------------------------------
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCE------------------------------------------ 53 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~------------------------------------------ 53 (148)
|+|+|||+|++|+-+|..|.+.|.+++++|+.+.+.+-
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 56699999999999999999999999999996544210
Q ss_pred --HHHHHHHHhHHhcCCc--EEEcCceEEEEec
Q psy5231 54 --KILIDRLMQKVNEGKI--DIKLKHIVHKIIG 82 (148)
Q Consensus 54 --~~~~~~l~~~l~~~~v--~i~~~~~v~~i~~ 82 (148)
+++.+.+++..++.++ .+.++++|.+++.
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~ 114 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVER 114 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEE
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeee
Confidence 1455666666666666 4788999998874
No 174
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.50 E-value=0.00017 Score=57.31 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=29.6
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||||+.|+-+|..|++.|.+|.++++..
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~ 33 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKP 33 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence 46999999999999999999999999999853
No 175
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.50 E-value=0.00015 Score=57.10 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=29.5
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||||++|+-+|..|++.|.+|+|+|+.+
T Consensus 8 dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 8 DAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 45999999999999999999999999999853
No 176
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.49 E-value=0.00015 Score=59.11 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=31.2
Q ss_pred EEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC
Q psy5231 18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR 51 (148)
Q Consensus 18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~ 51 (148)
|+|||||..|+-+|..|++.|.+|+|+|+.+.+.
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~G 34 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPG 34 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCc
Confidence 3899999999999999999999999999987653
No 177
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.48 E-value=0.00014 Score=57.36 Aligned_cols=31 Identities=29% Similarity=0.426 Sum_probs=29.5
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+|+|||||++|+-+|..|++.|.+|+|+|+.
T Consensus 4 dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 4 DVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 4599999999999999999999999999996
No 178
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=97.48 E-value=0.00021 Score=56.72 Aligned_cols=33 Identities=15% Similarity=0.263 Sum_probs=30.3
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
+|+|||+|++|.-+|..|++.|.+|.++|+.+.
T Consensus 5 DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~ 37 (396)
T COG0644 5 DVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSE 37 (396)
T ss_pred eEEEECCchHHHHHHHHHHHcCCeEEEEecCCC
Confidence 469999999999999999999999999999644
No 179
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.001 Score=51.21 Aligned_cols=67 Identities=19% Similarity=0.283 Sum_probs=48.0
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCe-EEEEEeCCC------------CCc------hHHHHHHHHhHHhcCCcEEEcCceE
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKK-VTLIHRNEK------------LRC------EKILIDRLMQKVNEGKIDIKLKHIV 77 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~-Vtlv~~~~~------------~~~------~~~~~~~l~~~l~~~~v~i~~~~~v 77 (148)
+|+|||||+.|+-+|.++++.+.+ +.+++.... +++ .+++.++.+++.+..++++.. ..+
T Consensus 5 DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~v 83 (305)
T COG0492 5 DVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DEV 83 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EEE
Confidence 569999999999999999999988 555554210 111 245667777766678888886 667
Q ss_pred EEEecCC
Q psy5231 78 HKIIGNN 84 (148)
Q Consensus 78 ~~i~~~~ 84 (148)
.++....
T Consensus 84 ~~v~~~~ 90 (305)
T COG0492 84 EKVELEG 90 (305)
T ss_pred EEEeecC
Confidence 7776654
No 180
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.47 E-value=0.00018 Score=57.71 Aligned_cols=32 Identities=31% Similarity=0.296 Sum_probs=29.8
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||||+.|+.+|..+++.|++|+|+++.+
T Consensus 5 dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~ 36 (438)
T PRK07251 5 DLIVIGFGKAGKTLAAKLASAGKKVALVEESK 36 (438)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence 35999999999999999999999999999864
No 181
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.46 E-value=0.00019 Score=58.15 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=30.3
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 50 (148)
+|+|||+|+.|+.+|..+++.|++|+||++++++
T Consensus 5 DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~ 38 (466)
T PRK06115 5 DVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTL 38 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCce
Confidence 4599999999999999999999999999975444
No 182
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.45 E-value=0.0002 Score=57.67 Aligned_cols=36 Identities=31% Similarity=0.503 Sum_probs=30.9
Q ss_pred ceEEEEcCchHHHHHHHHHhhc------CCeEEEEEeCCCCC
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNI------AKKVTLIHRNEKLR 51 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~------g~~Vtlv~~~~~~~ 51 (148)
++|+|||||.+|+-+|..|++. +.+|+|+|.++++.
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~G 43 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLG 43 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCcc
Confidence 4569999999999999999986 37899999987653
No 183
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.45 E-value=0.00021 Score=57.37 Aligned_cols=34 Identities=32% Similarity=0.410 Sum_probs=27.3
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 50 (148)
+|+|||||+.|+-+|..+++.|.+|.|+|+.+.+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~l 34 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFL 34 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSS
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccC
Confidence 4699999999999999999999999999997654
No 184
>PRK07538 hypothetical protein; Provisional
Probab=97.45 E-value=0.00021 Score=56.76 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=30.4
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
+|+|||||+.|+-+|..|++.|.+|+++|+.+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 469999999999999999999999999998654
No 185
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.44 E-value=0.00022 Score=57.36 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=31.2
Q ss_pred EEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC
Q psy5231 18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR 51 (148)
Q Consensus 18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~ 51 (148)
|+|||||.+|+-+|..|.+.|.+|+|+|+.+++.
T Consensus 2 v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~G 35 (453)
T TIGR02731 2 VAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLG 35 (453)
T ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 5999999999999999999999999999877654
No 186
>PLN02576 protoporphyrinogen oxidase
Probab=97.44 E-value=0.00021 Score=58.02 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=31.3
Q ss_pred EEEEcCchHHHHHHHHHhhc-CCeEEEEEeCCCCC
Q psy5231 18 TDVIGGGNTAVEEALYLSNI-AKKVTLIHRNEKLR 51 (148)
Q Consensus 18 v~ViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~~ 51 (148)
|+|||||.+|+-+|..|.+. |.+|+|+|.++++.
T Consensus 15 v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvG 49 (496)
T PLN02576 15 VAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVG 49 (496)
T ss_pred EEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 49999999999999999999 99999999987664
No 187
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.44 E-value=0.00019 Score=56.50 Aligned_cols=32 Identities=28% Similarity=0.419 Sum_probs=29.4
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||||++|+-+|..|++.|.+|+|+|+.+
T Consensus 5 dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 5 DIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 45999999999999999999999999999753
No 188
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.44 E-value=0.00022 Score=56.46 Aligned_cols=33 Identities=15% Similarity=0.294 Sum_probs=30.6
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
+|+|||||+.|+-+|..|++.|.+|+|+|+.+.
T Consensus 4 dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 569999999999999999999999999999763
No 189
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.44 E-value=0.00094 Score=52.52 Aligned_cols=68 Identities=15% Similarity=0.031 Sum_probs=46.8
Q ss_pred eEEEEcCchHHHHHHHHHhhc--CCeEEEEEeCCCCC---c----------h-HHHHH-HHHhHHhcCCcEEEcCceEEE
Q psy5231 17 FTDVIGGGNTAVEEALYLSNI--AKKVTLIHRNEKLR---C----------E-KILID-RLMQKVNEGKIDIKLKHIVHK 79 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~~---~----------~-~~~~~-~l~~~l~~~~v~i~~~~~v~~ 79 (148)
+++|||||..|+.+|..|++. ..+||++.+.+... . . .++.. ...+.+++.|++++.+++|.+
T Consensus 4 ~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~ 83 (377)
T PRK04965 4 GIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVTD 83 (377)
T ss_pred CEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEEE
Confidence 459999999999999999876 45799998755321 0 0 11111 122333467999999999988
Q ss_pred EecCC
Q psy5231 80 IIGNN 84 (148)
Q Consensus 80 i~~~~ 84 (148)
+..+.
T Consensus 84 id~~~ 88 (377)
T PRK04965 84 IDAEA 88 (377)
T ss_pred EECCC
Confidence 87643
No 190
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=97.43 E-value=0.00023 Score=56.40 Aligned_cols=32 Identities=34% Similarity=0.508 Sum_probs=29.8
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||||.+|+-+|.+|++.|.+|+|+++..
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~ 33 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQP 33 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 46999999999999999999999999999964
No 191
>PRK10015 oxidoreductase; Provisional
Probab=97.43 E-value=0.00024 Score=57.04 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=29.5
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||||++|+-+|..|++.|.+|.++++.+
T Consensus 7 DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~ 38 (429)
T PRK10015 7 DAIVVGAGVAGSVAALVMARAGLDVLVIERGD 38 (429)
T ss_pred CEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 45999999999999999999999999999854
No 192
>PRK07208 hypothetical protein; Provisional
Probab=97.42 E-value=0.00024 Score=57.46 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=31.5
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR 51 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~ 51 (148)
+|+|||||.+|+-+|..|++.|.+|+|+|+++++.
T Consensus 6 ~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~G 40 (479)
T PRK07208 6 SVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVG 40 (479)
T ss_pred cEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 34999999999999999999999999999977654
No 193
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=97.42 E-value=0.00024 Score=55.41 Aligned_cols=32 Identities=22% Similarity=0.244 Sum_probs=29.4
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||||.+|+-+|..|++.|.+|+|+++..
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGLSVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 45999999999999999999999999999853
No 194
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=97.42 E-value=0.00023 Score=56.21 Aligned_cols=32 Identities=19% Similarity=0.401 Sum_probs=29.5
Q ss_pred eEEEEcCchHHHHHHHHHhhc--CCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNI--AKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~ 48 (148)
+|+|||||.+|+-+|..|++. |.+|+|+++..
T Consensus 4 dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 4 DFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred cEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 459999999999999999998 99999999864
No 195
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.41 E-value=0.00025 Score=56.32 Aligned_cols=34 Identities=29% Similarity=0.382 Sum_probs=30.4
Q ss_pred eEEEEcCchHHHHHHHHHhhcC-CeEEEEEeCCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIA-KKVTLIHRNEKL 50 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~ 50 (148)
+|+|||||..|+-+|..|++.| .+|+|+|+.+.+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~ 36 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF 36 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC
Confidence 4699999999999999999998 599999997654
No 196
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.41 E-value=0.00023 Score=58.37 Aligned_cols=32 Identities=25% Similarity=0.187 Sum_probs=29.7
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||||.+|+-+|..|++.|.+|+|+|+.+
T Consensus 8 DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d 39 (508)
T PRK12266 8 DLLVIGGGINGAGIARDAAGRGLSVLLCEQDD 39 (508)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 45999999999999999999999999999964
No 197
>PRK06185 hypothetical protein; Provisional
Probab=97.40 E-value=0.00025 Score=56.11 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=29.6
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||||++|+-+|..|++.|.+|+|+++.+
T Consensus 8 dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~ 39 (407)
T PRK06185 8 DCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA 39 (407)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 34999999999999999999999999999864
No 198
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.40 E-value=0.00024 Score=56.12 Aligned_cols=31 Identities=29% Similarity=0.393 Sum_probs=29.1
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+|+|||||++|+-+|..|++.|.+|+++++.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 4699999999999999999999999999986
No 199
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.40 E-value=0.00018 Score=62.66 Aligned_cols=32 Identities=25% Similarity=0.181 Sum_probs=29.2
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
|+|+|||+|+.|+.+|..|++.|++||++++.
T Consensus 384 KKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 384 YNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 34499999999999999999999999999974
No 200
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.40 E-value=0.00026 Score=57.24 Aligned_cols=32 Identities=31% Similarity=0.299 Sum_probs=29.7
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||||+.|+-+|..|++.|.+|.|+|+..
T Consensus 41 DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 41 RVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 56999999999999999999999999999853
No 201
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.39 E-value=0.00075 Score=52.67 Aligned_cols=67 Identities=16% Similarity=0.101 Sum_probs=46.4
Q ss_pred eEEEEcCchHHHHHHHHHhhc---CCeEEEEEeCCCCCch-------------HHHHHHHHhHHhcCCcEEEcCceEEEE
Q psy5231 17 FTDVIGGGNTAVEEALYLSNI---AKKVTLIHRNEKLRCE-------------KILIDRLMQKVNEGKIDIKLKHIVHKI 80 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~---g~~Vtlv~~~~~~~~~-------------~~~~~~l~~~l~~~~v~i~~~~~v~~i 80 (148)
+|+|||||..|+.+|..|.+. ..+|+||++.+.+... .++...+.+.+++.|++++.+ .+.++
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i 79 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI 79 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEE
Confidence 359999999999999999643 6899999987653211 122223344555689999864 78787
Q ss_pred ecCC
Q psy5231 81 IGNN 84 (148)
Q Consensus 81 ~~~~ 84 (148)
..+.
T Consensus 80 d~~~ 83 (364)
T TIGR03169 80 DPDR 83 (364)
T ss_pred eccc
Confidence 6543
No 202
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.38 E-value=0.00026 Score=58.40 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=31.2
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 50 (148)
+|+|||+|++|+-+|..|++.|.+|+++++.+.+
T Consensus 25 dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~ 58 (547)
T PRK08132 25 PVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL 58 (547)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 4599999999999999999999999999997654
No 203
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.37 E-value=0.00025 Score=55.78 Aligned_cols=32 Identities=22% Similarity=0.302 Sum_probs=29.4
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||||++|+-+|..|++.|.+|+++++.+
T Consensus 7 dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 7 DIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred cEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 45999999999999999999999999999853
No 204
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.37 E-value=0.0003 Score=57.08 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=30.8
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 50 (148)
+|+|||||+.|+.+|..+++.|.+|+|+++.+.+
T Consensus 6 DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~ 39 (471)
T PRK06467 6 QVVVLGAGPAGYSAAFRAADLGLETVCVERYSTL 39 (471)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcc
Confidence 4599999999999999999999999999986544
No 205
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.36 E-value=0.00029 Score=55.62 Aligned_cols=32 Identities=16% Similarity=0.224 Sum_probs=29.9
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||||+.|+-+|..|++.|.+|+|+|+.+
T Consensus 4 dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~ 35 (392)
T PRK08243 4 QVAIIGAGPAGLLLGQLLHLAGIDSVVLERRS 35 (392)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 45999999999999999999999999999865
No 206
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=97.36 E-value=0.00027 Score=58.42 Aligned_cols=32 Identities=25% Similarity=0.274 Sum_probs=29.6
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||||.+|+-+|..|++.|.+|+|+++.+
T Consensus 8 DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d 39 (546)
T PRK11101 8 DVIIIGGGATGAGIARDCALRGLRCILVERHD 39 (546)
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 45999999999999999999999999999854
No 207
>PRK11445 putative oxidoreductase; Provisional
Probab=97.36 E-value=0.00034 Score=54.57 Aligned_cols=32 Identities=25% Similarity=0.255 Sum_probs=29.4
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
+|+|||||++|+-+|..|++. .+|+++++.++
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~ 34 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQ 34 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCc
Confidence 469999999999999999999 99999998764
No 208
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.36 E-value=0.00025 Score=55.71 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=29.1
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+|+|||||++|+-+|..|++.|.+|+|+|+.
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence 4699999999999999999999999999974
No 209
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.36 E-value=0.00033 Score=56.47 Aligned_cols=33 Identities=33% Similarity=0.439 Sum_probs=30.0
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 50 (148)
+|+|||||+.|+.+|..|++.|.+|+++++ +.+
T Consensus 3 DvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~ 35 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYL 35 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCC
Confidence 469999999999999999999999999998 444
No 210
>KOG2614|consensus
Probab=97.35 E-value=0.00036 Score=55.17 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=32.7
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC 52 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~ 52 (148)
+|+|+|||.+|+-+|..|.+.|.+|.++|.++.+++
T Consensus 4 ~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~ 39 (420)
T KOG2614|consen 4 KVVIVGGGIVGLATALALHRKGIDVVVLESREDPRG 39 (420)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCeEEEEeecccccc
Confidence 459999999999999999999999999999777654
No 211
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.33 E-value=0.0004 Score=54.98 Aligned_cols=36 Identities=17% Similarity=0.295 Sum_probs=32.3
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC 52 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~ 52 (148)
+++|||||.+|+-+|..|++.|.+|+++++++.+.+
T Consensus 3 DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG 38 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGG 38 (377)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence 459999999999999999999999999999776654
No 212
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.33 E-value=0.00035 Score=54.61 Aligned_cols=32 Identities=31% Similarity=0.500 Sum_probs=29.4
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||||.+|+-+|.+|++.|.+|+++++..
T Consensus 6 ~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~ 37 (387)
T COG0665 6 DVVIIGGGIVGLSAAYYLAERGADVTVLEAGE 37 (387)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCEEEEEecCc
Confidence 45999999999999999999999999999753
No 213
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.32 E-value=0.00031 Score=56.41 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=29.6
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||||+.|+.+|..|++.|.+|+|+++.+
T Consensus 5 DvvVIGgGpaGl~aA~~la~~g~~V~lie~~~ 36 (441)
T PRK08010 5 QAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN 36 (441)
T ss_pred CEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC
Confidence 45999999999999999999999999999864
No 214
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.32 E-value=0.00038 Score=54.71 Aligned_cols=32 Identities=34% Similarity=0.414 Sum_probs=29.3
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||||++|+-+|..|++.|.+|+|+++.+
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~ 32 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHP 32 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Confidence 35999999999999999999999999999754
No 215
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.32 E-value=0.00035 Score=56.36 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=29.4
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+++|||||+.|+.+|..+++.|++|.|+++..
T Consensus 6 DvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 6 DVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 45999999999999999999999999999853
No 216
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.31 E-value=0.00034 Score=57.24 Aligned_cols=32 Identities=28% Similarity=0.227 Sum_probs=29.8
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||||.+|+-+|.+|+++|.+|.|+|+.+
T Consensus 8 DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d 39 (502)
T PRK13369 8 DLFVIGGGINGAGIARDAAGRGLKVLLCEKDD 39 (502)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEECCC
Confidence 35999999999999999999999999999974
No 217
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.30 E-value=0.0004 Score=56.56 Aligned_cols=34 Identities=26% Similarity=0.163 Sum_probs=31.1
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 50 (148)
+++|||+|..|+-+|..|++.|.+|+|+|+.+.+
T Consensus 2 dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~ 35 (493)
T TIGR02730 2 DAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIP 35 (493)
T ss_pred cEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 3599999999999999999999999999997654
No 218
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.30 E-value=0.00094 Score=57.98 Aligned_cols=68 Identities=12% Similarity=0.027 Sum_probs=47.7
Q ss_pred eEEEEcCchHHHHHHHHHhhc----CCeEEEEEeCCCCCch-------------HHHHHHHHhHHhcCCcEEEcCceEEE
Q psy5231 17 FTDVIGGGNTAVEEALYLSNI----AKKVTLIHRNEKLRCE-------------KILIDRLMQKVNEGKIDIKLKHIVHK 79 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~----g~~Vtlv~~~~~~~~~-------------~~~~~~l~~~l~~~~v~i~~~~~v~~ 79 (148)
+|+|||+|+.|+.+|..|.+. +.+||+|++.+.+... +++.....+.+++.||+++.++.+.+
T Consensus 5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V~~ 84 (847)
T PRK14989 5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAIT 84 (847)
T ss_pred cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEEEE
Confidence 349999999999999999764 4689999887654211 11111123344568999999998888
Q ss_pred EecCC
Q psy5231 80 IIGNN 84 (148)
Q Consensus 80 i~~~~ 84 (148)
+..+.
T Consensus 85 Id~~~ 89 (847)
T PRK14989 85 INRQE 89 (847)
T ss_pred EeCCC
Confidence 86543
No 219
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.30 E-value=0.0003 Score=55.75 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=28.9
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+|+|||||++|+-+|..|++.|.+|+++|+.
T Consensus 6 dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 6 DVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 3499999999999999999999999999984
No 220
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.30 E-value=0.00033 Score=58.50 Aligned_cols=31 Identities=32% Similarity=0.471 Sum_probs=29.2
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+|+|||||..|+++|..+++.|.+|.|+++.
T Consensus 6 DVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~ 36 (618)
T PRK05192 6 DVIVVGGGHAGCEAALAAARMGAKTLLLTHN 36 (618)
T ss_pred eEEEECchHHHHHHHHHHHHcCCcEEEEecc
Confidence 4599999999999999999999999999986
No 221
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.30 E-value=0.00042 Score=56.18 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=29.1
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+++|||||+.|+.+|..+++.|++|+|+++.
T Consensus 6 dvvVIG~GpaG~~aA~~aa~~G~~v~lie~~ 36 (472)
T PRK05976 6 DLVIIGGGPGGYVAAIRAGQLGLKTALVEKG 36 (472)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence 4599999999999999999999999999984
No 222
>PRK06116 glutathione reductase; Validated
Probab=97.28 E-value=0.00038 Score=55.99 Aligned_cols=31 Identities=32% Similarity=0.342 Sum_probs=28.9
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+++|||||+.|+.+|..+++.|.+|+||++.
T Consensus 6 DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~ 36 (450)
T PRK06116 6 DLIVIGGGSGGIASANRAAMYGAKVALIEAK 36 (450)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 3599999999999999999999999999974
No 223
>PRK06834 hypothetical protein; Provisional
Probab=97.27 E-value=0.00041 Score=56.59 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=29.6
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||||++|+-+|..|++.|.+|+++++.+
T Consensus 5 dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~ 36 (488)
T PRK06834 5 AVVIAGGGPTGLMLAGELALAGVDVAIVERRP 36 (488)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 45999999999999999999999999999854
No 224
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.27 E-value=0.00044 Score=55.71 Aligned_cols=34 Identities=26% Similarity=0.471 Sum_probs=31.2
Q ss_pred eEEEEcCchHHHHHHHHHhhcC--CeEEEEEeCCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIA--KKVTLIHRNEKL 50 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~ 50 (148)
+++|||||.+|+-+|.+|.+.+ .+++|+|.++++
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~ 37 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRV 37 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCC
Confidence 5699999999999999999999 899999997665
No 225
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.25 E-value=0.00042 Score=58.28 Aligned_cols=32 Identities=31% Similarity=0.404 Sum_probs=29.9
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||||.+|+-+|..|+..|.+|+|+|+.+
T Consensus 73 DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d 104 (627)
T PLN02464 73 DVLVVGGGATGAGVALDAATRGLRVGLVERED 104 (627)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCEEEEEeccc
Confidence 46999999999999999999999999999964
No 226
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.25 E-value=0.00045 Score=54.45 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=29.0
Q ss_pred eEEEEcCchHHHHHHHHHhhcC--CeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIA--KKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~ 48 (148)
+|+|||||++|+-+|..|++.| .+|+|+|+.+
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~ 36 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAP 36 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence 4699999999999999999985 9999999854
No 227
>PRK06370 mercuric reductase; Validated
Probab=97.24 E-value=0.00048 Score=55.68 Aligned_cols=31 Identities=32% Similarity=0.350 Sum_probs=29.0
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+|+|||+|+.|+.+|..+++.|++|+|+++.
T Consensus 7 DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~ 37 (463)
T PRK06370 7 DAIVIGAGQAGPPLAARAAGLGMKVALIERG 37 (463)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 4599999999999999999999999999974
No 228
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.23 E-value=0.00098 Score=57.45 Aligned_cols=67 Identities=9% Similarity=0.027 Sum_probs=47.8
Q ss_pred EEEEcCchHHHHHHHHHhhc---CCeEEEEEeCCCCCch--------------HHHHHHHHhHHhcCCcEEEcCceEEEE
Q psy5231 18 TDVIGGGNTAVEEALYLSNI---AKKVTLIHRNEKLRCE--------------KILIDRLMQKVNEGKIDIKLKHIVHKI 80 (148)
Q Consensus 18 v~ViGgG~~g~e~A~~l~~~---g~~Vtlv~~~~~~~~~--------------~~~~~~l~~~l~~~~v~i~~~~~v~~i 80 (148)
|+|||+|+.|+.+|..|.+. +.+|||+++.+.+... +++.....+.+++.||+++++++|.+|
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 38999999999999998775 4689999987653211 111111234455789999999999888
Q ss_pred ecCC
Q psy5231 81 IGNN 84 (148)
Q Consensus 81 ~~~~ 84 (148)
..+.
T Consensus 81 d~~~ 84 (785)
T TIGR02374 81 DTDQ 84 (785)
T ss_pred ECCC
Confidence 7654
No 229
>PLN02529 lysine-specific histone demethylase 1
Probab=97.23 E-value=0.0005 Score=58.68 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=32.8
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC 52 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~ 52 (148)
++|+|||+|..|+.+|..|++.|.+|+++|.++++.+
T Consensus 161 ~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG 197 (738)
T PLN02529 161 GSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGG 197 (738)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcC
Confidence 4559999999999999999999999999999776543
No 230
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.22 E-value=0.00049 Score=58.14 Aligned_cols=32 Identities=34% Similarity=0.405 Sum_probs=29.8
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||||.+|+-+|..|++.|.+|+|+++..
T Consensus 262 dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~ 293 (662)
T PRK01747 262 DAAIIGGGIAGAALALALARRGWQVTLYEADE 293 (662)
T ss_pred CEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence 45999999999999999999999999999864
No 231
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.22 E-value=0.00047 Score=55.34 Aligned_cols=30 Identities=30% Similarity=0.355 Sum_probs=28.2
Q ss_pred eEEEEcCchHHHHHHHHHhh----cCCeEEEEEe
Q psy5231 17 FTDVIGGGNTAVEEALYLSN----IAKKVTLIHR 46 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~----~g~~Vtlv~~ 46 (148)
+|+|||||++|+-+|..|++ .|.+|+++|+
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~ 35 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDA 35 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeC
Confidence 45999999999999999998 7999999998
No 232
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.21 E-value=0.00048 Score=57.74 Aligned_cols=41 Identities=20% Similarity=0.131 Sum_probs=32.9
Q ss_pred ccCCCCCeEEecccCccccchhHHHHHHHHHHHHHHHHhhC
Q psy5231 108 TSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148 (148)
Q Consensus 108 ~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~l 148 (148)
.+|++||+||+|||+...-+++...+..+|.+|+.++.+++
T Consensus 402 ~~T~i~gLyA~Ge~~~~~~h~l~~nsl~eg~~ag~~a~~~~ 442 (614)
T TIGR02061 402 RMTTVEGLFTCGDGVGASPHKFSSGSFTEGRIAAKAAVRWI 442 (614)
T ss_pred CccccCCEEeceecccCcchhhHHhHHHHHHHHHHHHHHHH
Confidence 78999999999999653213567788899999999887753
No 233
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.21 E-value=0.0006 Score=55.44 Aligned_cols=34 Identities=15% Similarity=0.320 Sum_probs=31.3
Q ss_pred EEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC
Q psy5231 18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR 51 (148)
Q Consensus 18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~ 51 (148)
++|||||.+|+-+|..|++.|.+|+++|+.+.+.
T Consensus 2 v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~G 35 (474)
T TIGR02732 2 VAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIG 35 (474)
T ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCC
Confidence 5999999999999999999999999999977654
No 234
>PLN02985 squalene monooxygenase
Probab=97.21 E-value=0.00061 Score=56.00 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=29.9
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||||..|+-+|..|++.|.+|+++|+..
T Consensus 45 DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 45 DVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 56999999999999999999999999999864
No 235
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.20 E-value=0.00041 Score=55.59 Aligned_cols=45 Identities=27% Similarity=0.187 Sum_probs=40.7
Q ss_pred eEEecCCCCcccccCCCCCeEEecccCccccchhHHHHHHHHHHHHHHHHhh
Q psy5231 96 YIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRY 147 (148)
Q Consensus 96 ~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~ 147 (148)
.+.+|+. ++|+++|+|++||.++.. +.+..|+.+|.++|..|.+.
T Consensus 438 ri~~d~~-----~~t~i~gLy~aGdGAG~a--rgI~~Aaa~Gi~~A~~i~~k 482 (486)
T COG2509 438 RIKVDED-----LSTSIKGLYPAGDGAGLA--RGIVSAAADGIKAAEGIARK 482 (486)
T ss_pred eEeeccc-----ceeeecceEEcccccccc--chhHHHhhhhHHHHHHHHHH
Confidence 5677888 999999999999999987 78999999999999999874
No 236
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.20 E-value=0.00049 Score=54.06 Aligned_cols=31 Identities=32% Similarity=0.365 Sum_probs=28.7
Q ss_pred eEEEEcCchHHHHHHHHHhhc---CCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNI---AKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~---g~~Vtlv~~~ 47 (148)
+|+|||||++|+-+|..|++. |.+|+|+|+.
T Consensus 5 dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 5 DVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 359999999999999999998 9999999983
No 237
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.20 E-value=0.00044 Score=55.82 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=29.0
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+|+|||||+.|+.+|..+++.|++|+|+++.
T Consensus 4 DvvVIG~GpaG~~aA~~aa~~G~~V~liE~~ 34 (450)
T TIGR01421 4 DYLVIGGGSGGIASARRAAEHGAKALLVEAK 34 (450)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEeccc
Confidence 4599999999999999999999999999974
No 238
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.19 E-value=0.00056 Score=56.36 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=30.1
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
+|+|||||++|+-+|..|++.|.+|+++|+.+.
T Consensus 12 dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~ 44 (538)
T PRK06183 12 DVVIVGAGPVGLTLANLLGQYGVRVLVLERWPT 44 (538)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 349999999999999999999999999998653
No 239
>PRK07190 hypothetical protein; Provisional
Probab=97.18 E-value=0.0006 Score=55.64 Aligned_cols=32 Identities=13% Similarity=0.166 Sum_probs=29.6
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||+|++|+-+|..|++.|.+|+++++.+
T Consensus 7 dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~ 38 (487)
T PRK07190 7 DVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSD 38 (487)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 45999999999999999999999999999864
No 240
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.17 E-value=0.00065 Score=55.05 Aligned_cols=32 Identities=34% Similarity=0.510 Sum_probs=29.8
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
++++|||+|+.|+++|..+++.|.+|+++++.
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~ 33 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERD 33 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence 45699999999999999999999999999975
No 241
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=97.17 E-value=0.00056 Score=54.29 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=28.3
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
+|+|||+|..|+-+|..+++.|.+|.|+++.+.
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~ 33 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPR 33 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSG
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecc
Confidence 469999999999999999999999999998654
No 242
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.17 E-value=0.00084 Score=50.75 Aligned_cols=32 Identities=19% Similarity=0.360 Sum_probs=30.0
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
.+|+|||+|..|+-+|..|+..|.+||+++++
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg 33 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKG 33 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcC
Confidence 36799999999999999999999999999985
No 243
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=97.16 E-value=0.0006 Score=55.13 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=28.8
Q ss_pred eEEEEcCchHHHHHHHHHhhc--CCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNI--AKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~ 47 (148)
+|+|||||.+|+-+|.+|++. |.+|+|+++.
T Consensus 26 DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~ 58 (460)
T TIGR03329 26 DVCIVGGGFTGLWTAIMIKQQRPALDVLVLEAD 58 (460)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 569999999999999999998 8999999974
No 244
>KOG2755|consensus
Probab=97.14 E-value=0.00092 Score=50.30 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=23.0
Q ss_pred CCeEEecCCCCcccccCCCCCeEEecccCcc
Q psy5231 94 DGYIKTKLNKKTGYTSTNISGVFCRWRCTRL 124 (148)
Q Consensus 94 ~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~ 124 (148)
.|.+.+|.. ++|+.|++|++||++..
T Consensus 297 dggikvdd~-----m~tslpdvFa~gDvctt 322 (334)
T KOG2755|consen 297 DGGIKVDDA-----METSLPDVFAAGDVCTT 322 (334)
T ss_pred ccCeeehhh-----ccccccceeeecceecc
Confidence 477888888 99999999999999874
No 245
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.13 E-value=0.00077 Score=56.20 Aligned_cols=49 Identities=24% Similarity=0.203 Sum_probs=38.8
Q ss_pred CCeEEecCCCCcccccCCCCCeEEecccCccc--c-----chhHHHHHHHHHHHHHHHHhh
Q psy5231 94 DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLY--F-----IDKQLLALGSGCMAALDAQRY 147 (148)
Q Consensus 94 ~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~--~-----~~~~~~A~~~G~~aA~~i~~~ 147 (148)
.|.|.+|.. .+|++||+||+|+|++.. + -..+..|+-.|++|+.++..+
T Consensus 358 ~GGi~vd~~-----~~t~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~ 413 (582)
T PRK09231 358 MGGIETDQN-----CETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAER 413 (582)
T ss_pred CCCEEECCC-----CccccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHHh
Confidence 477889988 899999999999986421 0 135678889999999998765
No 246
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.12 E-value=0.00072 Score=54.61 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=29.0
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+++|||+|+.|+.+|..+++.|++|+++++.
T Consensus 2 DvvVIGaGpaG~~aA~~aa~~g~~v~lie~~ 32 (463)
T TIGR02053 2 DLVIIGSGAAAFAAAIKAAELGASVAMVERG 32 (463)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4699999999999999999999999999974
No 247
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.12 E-value=0.0044 Score=49.46 Aligned_cols=67 Identities=19% Similarity=0.208 Sum_probs=46.0
Q ss_pred eEEEEcCchHHHHHHHHHhhcC--CeEEEEEeCCCCCc-------------hHHHHHHHHhHHh-cCCcEEEcCceEEEE
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIA--KKVTLIHRNEKLRC-------------EKILIDRLMQKVN-EGKIDIKLKHIVHKI 80 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~~~-------------~~~~~~~l~~~l~-~~~v~i~~~~~v~~i 80 (148)
+|||||||..|+.+|..|.+.- .+||||++++...- .....-.+++.++ ..+++++. .+|.+|
T Consensus 5 ~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~-~~V~~I 83 (405)
T COG1252 5 RIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQ-GEVTDI 83 (405)
T ss_pred eEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEE-EEEEEE
Confidence 4599999999999999999874 88999999765321 1122223444444 34588885 467777
Q ss_pred ecCC
Q psy5231 81 IGNN 84 (148)
Q Consensus 81 ~~~~ 84 (148)
..+.
T Consensus 84 D~~~ 87 (405)
T COG1252 84 DRDA 87 (405)
T ss_pred cccC
Confidence 6554
No 248
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.12 E-value=0.00078 Score=54.32 Aligned_cols=30 Identities=33% Similarity=0.378 Sum_probs=28.4
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEe
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHR 46 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~ 46 (148)
+|+|||||+.|+.+|..|++.|++|.+|++
T Consensus 5 DvvIIG~G~aGl~aA~~l~~~g~~v~lie~ 34 (460)
T PRK06292 5 DVIVIGAGPAGYVAARRAAKLGKKVALIEK 34 (460)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeC
Confidence 459999999999999999999999999998
No 249
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=97.12 E-value=0.00075 Score=55.07 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=29.2
Q ss_pred eEEEEcCchHHHHHHHHHhhc--CCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNI--AKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~ 48 (148)
+|+|||||.+|+-+|..|++. |.+|+|+|+.+
T Consensus 2 DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~ 35 (483)
T TIGR01320 2 DVVLIGAGIMSATLGVLLRELEPNWSITLIERLD 35 (483)
T ss_pred cEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence 469999999999999999997 99999999853
No 250
>PLN02463 lycopene beta cyclase
Probab=97.10 E-value=0.00074 Score=54.62 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=29.5
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||||++|+.+|..|++.|.+|.++++.+
T Consensus 30 DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~ 61 (447)
T PLN02463 30 DLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP 61 (447)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence 56999999999999999999999999999853
No 251
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.09 E-value=0.00061 Score=44.00 Aligned_cols=36 Identities=36% Similarity=0.338 Sum_probs=30.9
Q ss_pred hhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
..+|+++ +|||||.+|..-+..|.+.|.+||++...
T Consensus 4 ~l~~~~v----lVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 4 DLKGKRV----LVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp --TT-EE----EEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred EcCCCEE----EEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 4567888 99999999999999999999999999865
No 252
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.09 E-value=0.00071 Score=46.98 Aligned_cols=32 Identities=38% Similarity=0.419 Sum_probs=29.4
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|+|+|..|.-+|..|+..|.+|+|+.|++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 46999999999999999999999999998853
No 253
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=97.08 E-value=0.00094 Score=53.53 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=29.9
Q ss_pred eEEEEcCchHHHHHHHHHhhcC-CeEEEEEeCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIA-KKVTLIHRNEK 49 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~ 49 (148)
+|+|||+|.+|+-+|..+++.| .+|+|+++.+.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~ 34 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPV 34 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCC
Confidence 3699999999999999999999 99999998543
No 254
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.07 E-value=0.00081 Score=56.83 Aligned_cols=32 Identities=22% Similarity=0.155 Sum_probs=29.8
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||||+.|+-+|..|++.|.+|+|+||.+
T Consensus 83 ~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 83 RVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 45999999999999999999999999999864
No 255
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.07 E-value=0.0011 Score=51.12 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=33.1
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC 52 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~ 52 (148)
+++|||+|.+|.-+|..+++.|++|-+|++++.+.+
T Consensus 3 d~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGG 38 (374)
T COG0562 3 DYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGG 38 (374)
T ss_pred cEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCC
Confidence 459999999999999999999999999999988865
No 256
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.07 E-value=0.00083 Score=54.36 Aligned_cols=31 Identities=16% Similarity=0.279 Sum_probs=28.9
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+|+|||||+.|+.+|..+++.|++|+|+++.
T Consensus 6 DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~ 36 (466)
T PRK07818 6 DVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK 36 (466)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 3599999999999999999999999999974
No 257
>PLN02487 zeta-carotene desaturase
Probab=97.03 E-value=0.0011 Score=55.08 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=31.7
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR 51 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~ 51 (148)
+|+|||+|..|+-+|..|++.|++|+++|+.+.+.
T Consensus 77 ~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~g 111 (569)
T PLN02487 77 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIG 111 (569)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCC
Confidence 45999999999999999999999999999876653
No 258
>KOG1298|consensus
Probab=97.01 E-value=0.0014 Score=51.87 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=29.3
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+|+|||+|..|..+|..|++.|.+|++|||.
T Consensus 47 DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 47 DVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred cEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 4699999999999999999999999999994
No 259
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.00 E-value=0.0011 Score=55.93 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=29.3
Q ss_pred eEEEEcCchHHHHHHHHHhhc-CCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNI-AKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~ 48 (148)
+|+|||||++|+-+|..|+++ |.+|+|+++.+
T Consensus 34 dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~ 66 (634)
T PRK08294 34 DVLIVGCGPAGLTLAAQLSAFPDITTRIVERKP 66 (634)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCC
Confidence 459999999999999999996 99999999864
No 260
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.00 E-value=0.0011 Score=52.34 Aligned_cols=33 Identities=24% Similarity=0.242 Sum_probs=29.2
Q ss_pred eEEEEcCchHHHHHHHHH--hhcCCeEEEEEeCCC
Q psy5231 17 FTDVIGGGNTAVEEALYL--SNIAKKVTLIHRNEK 49 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l--~~~g~~Vtlv~~~~~ 49 (148)
+|+|||+|++|+-+|..| ++.|.+|.++++.++
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~ 35 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPK 35 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence 469999999999999999 788999999987543
No 261
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=96.98 E-value=0.0012 Score=53.37 Aligned_cols=31 Identities=35% Similarity=0.398 Sum_probs=29.0
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+|+|||||+.|+.+|..+++.|++|++|++.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~ 32 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA 32 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 4599999999999999999999999999985
No 262
>PRK14727 putative mercuric reductase; Provisional
Probab=96.98 E-value=0.0012 Score=53.75 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=29.6
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+++|||+|+.|+.+|..+++.|.+|+++++.+
T Consensus 18 dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~ 49 (479)
T PRK14727 18 HVAIIGSGSAAFAAAIKAAEHGARVTIIEGAD 49 (479)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 45999999999999999999999999999863
No 263
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=96.98 E-value=0.0012 Score=53.37 Aligned_cols=32 Identities=34% Similarity=0.369 Sum_probs=29.5
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||+|.+|+-+|..+++.|.+|+|+|+.+
T Consensus 6 DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~ 37 (466)
T PRK08274 6 DVLVIGGGNAALCAALAAREAGASVLLLEAAP 37 (466)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 45999999999999999999999999999854
No 264
>PTZ00367 squalene epoxidase; Provisional
Probab=96.98 E-value=0.0011 Score=55.20 Aligned_cols=32 Identities=25% Similarity=0.263 Sum_probs=29.6
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||||+.|+-+|..|++.|.+|+++||..
T Consensus 35 dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 35 DVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 45999999999999999999999999999864
No 265
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=96.97 E-value=0.0012 Score=56.78 Aligned_cols=36 Identities=19% Similarity=0.212 Sum_probs=32.2
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR 51 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~ 51 (148)
++|+|||+|.+|+.+|..|.+.|.+|++++.++++.
T Consensus 239 ~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~G 274 (808)
T PLN02328 239 ANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPG 274 (808)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCC
Confidence 345999999999999999999999999999977654
No 266
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=96.96 E-value=0.0015 Score=51.49 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=30.0
Q ss_pred eEEEEcCchHHHHHHHHHhhc--CCeEEEEEeCCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNI--AKKVTLIHRNEKL 50 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~ 50 (148)
+|+|||||+.|+.+|..|++. |.+|.++++.+.+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~ 36 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTI 36 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence 359999999999999999987 9999999986643
No 267
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=96.95 E-value=0.0012 Score=52.20 Aligned_cols=31 Identities=23% Similarity=0.505 Sum_probs=27.7
Q ss_pred eEEEEcCchHHHHHHHHHhhc-C-CeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNI-A-KKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~-g-~~Vtlv~~~ 47 (148)
+|+|||||.+|+-+|..|++. | ++|+|+++.
T Consensus 32 dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~ 64 (407)
T TIGR01373 32 DVIIVGGGGHGLATAYYLAKEHGITNVAVLEKG 64 (407)
T ss_pred CEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcc
Confidence 349999999999999999985 8 599999985
No 268
>PRK13748 putative mercuric reductase; Provisional
Probab=96.94 E-value=0.0013 Score=54.41 Aligned_cols=31 Identities=39% Similarity=0.527 Sum_probs=29.1
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+|+|||||+.|+.+|..+++.|.+|.||++.
T Consensus 100 DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~ 130 (561)
T PRK13748 100 HVAVIGSGGAAMAAALKAVEQGARVTLIERG 130 (561)
T ss_pred CEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 4599999999999999999999999999985
No 269
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.94 E-value=0.0011 Score=51.86 Aligned_cols=38 Identities=39% Similarity=0.415 Sum_probs=28.1
Q ss_pred hcCCcccceEEEEcCchHHHHHHHHHhhcCC--eEEEEEeCCCC
Q psy5231 9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAK--KVTLIHRNEKL 50 (148)
Q Consensus 9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~--~Vtlv~~~~~~ 50 (148)
..+++| +|||||.+|.|++..|.+.+. +|+++.|+..+
T Consensus 188 ~~~~~V----~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~ 227 (341)
T PF13434_consen 188 LAGKRV----AVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGF 227 (341)
T ss_dssp ---EEE----EEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-
T ss_pred cCCCeE----EEECCcHhHHHHHHHHHhCCCCcEEEEEECCCcc
Confidence 345555 999999999999999998864 89999997543
No 270
>PRK07121 hypothetical protein; Validated
Probab=96.92 E-value=0.0016 Score=53.04 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=30.0
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
+|+|||+|..|+-+|..+++.|.+|+|+++...
T Consensus 22 DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~ 54 (492)
T PRK07121 22 DVVVVGFGAAGACAAIEAAAAGARVLVLERAAG 54 (492)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 459999999999999999999999999998543
No 271
>PLN02612 phytoene desaturase
Probab=96.92 E-value=0.0017 Score=54.05 Aligned_cols=35 Identities=23% Similarity=0.392 Sum_probs=31.3
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 50 (148)
++|+|||+|..|+-+|..|++.|.+|+++|+.+.+
T Consensus 94 ~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~ 128 (567)
T PLN02612 94 LKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVL 128 (567)
T ss_pred CCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 34599999999999999999999999999987654
No 272
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=96.92 E-value=0.0015 Score=54.42 Aligned_cols=49 Identities=24% Similarity=0.196 Sum_probs=38.6
Q ss_pred CCeEEecCCCCcccccCCCCCeEEecccCccc--c-----chhHHHHHHHHHHHHHHHHhh
Q psy5231 94 DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLY--F-----IDKQLLALGSGCMAALDAQRY 147 (148)
Q Consensus 94 ~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~--~-----~~~~~~A~~~G~~aA~~i~~~ 147 (148)
.|.+.+|.. .+|++||+||+|+|+... + -..+..|+-.|++|+.++..+
T Consensus 357 ~GGi~~d~~-----~~t~i~GLyAaGe~a~~G~hGanrl~g~sl~~~~v~G~~ag~~aa~~ 412 (580)
T TIGR01176 357 MGGIETDIN-----CETRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEAAAER 412 (580)
T ss_pred CCCeeECcC-----cccccCCeEeeecccccCcCCCccccchhHHHHHHHHHHHHHHHHHh
Confidence 467889998 899999999999986321 0 135678889999999998765
No 273
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.91 E-value=0.0046 Score=44.94 Aligned_cols=36 Identities=25% Similarity=0.342 Sum_probs=32.1
Q ss_pred hhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
...|+++ +|||||.+|..-+..|.+.|.+||++...
T Consensus 6 ~l~gk~v----lVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 6 NLEGRAV----LVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred EcCCCeE----EEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3567888 99999999999999999999999999753
No 274
>PRK14694 putative mercuric reductase; Provisional
Probab=96.90 E-value=0.0014 Score=53.06 Aligned_cols=31 Identities=39% Similarity=0.551 Sum_probs=29.0
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+|+|||||+.|+.+|..|++.|.+|.+|++.
T Consensus 8 dviVIGaG~aG~~aA~~l~~~g~~v~lie~~ 38 (468)
T PRK14694 8 HIAVIGSGGSAMAAALKATERGARVTLIERG 38 (468)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEEcc
Confidence 4599999999999999999999999999975
No 275
>PTZ00052 thioredoxin reductase; Provisional
Probab=96.88 E-value=0.0015 Score=53.56 Aligned_cols=30 Identities=33% Similarity=0.334 Sum_probs=28.3
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEe
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHR 46 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~ 46 (148)
+|+|||||+.|+.+|..+++.|++|.||++
T Consensus 7 DviVIG~GpaG~~AA~~aa~~G~~V~lie~ 36 (499)
T PTZ00052 7 DLVVIGGGSGGMAAAKEAAAHGKKVALFDY 36 (499)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 349999999999999999999999999996
No 276
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=96.88 E-value=0.0017 Score=53.83 Aligned_cols=48 Identities=25% Similarity=0.252 Sum_probs=37.2
Q ss_pred CeEEecCCCCccccc----CCCCCeEEecccCcc--cc-----chhHHHHHHHHHHHHHHHHhh
Q psy5231 95 GYIKTKLNKKTGYTS----TNISGVFCRWRCTRL--YF-----IDKQLLALGSGCMAALDAQRY 147 (148)
Q Consensus 95 g~i~vd~~~~~~~~~----t~~~~vya~GD~~~~--~~-----~~~~~~A~~~G~~aA~~i~~~ 147 (148)
|.+.+|.. .+ |++||+||+|+|++. .+ -..+..|+-.|++|+.++.++
T Consensus 343 GGi~id~~-----~~v~~~t~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~ 401 (566)
T TIGR01812 343 GGIPTDYT-----GRVICETIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAAEY 401 (566)
T ss_pred CCeEECcC-----cccccCcccCCeeecccccccCcCcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 56777777 77 999999999998642 10 035788899999999998765
No 277
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.87 E-value=0.0051 Score=49.49 Aligned_cols=59 Identities=25% Similarity=0.342 Sum_probs=42.2
Q ss_pred cCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceE
Q psy5231 10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIV 77 (148)
Q Consensus 10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v 77 (148)
.+|++ +|+|+|.+|+.+|..|++.|++|+++++... +.+ +...+.|++.|++++.....
T Consensus 4 ~~k~v----~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~----~~~-~~~~~~l~~~~~~~~~~~~~ 62 (450)
T PRK14106 4 KGKKV----LVVGAGVSGLALAKFLKKLGAKVILTDEKEE----DQL-KEALEELGELGIELVLGEYP 62 (450)
T ss_pred CCCEE----EEECCCHHHHHHHHHHHHCCCEEEEEeCCch----HHH-HHHHHHHHhcCCEEEeCCcc
Confidence 56777 9999999999999999999999999987532 112 22222334567887655443
No 278
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.87 E-value=0.0016 Score=53.55 Aligned_cols=32 Identities=31% Similarity=0.313 Sum_probs=29.9
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||||..|+-+|..++.+|.+|.|+|+.+
T Consensus 14 DviVIGGGitG~GiArDaA~RGl~v~LvE~~D 45 (532)
T COG0578 14 DVIVIGGGITGAGIARDAAGRGLKVALVEKGD 45 (532)
T ss_pred CEEEECCchhhHHHHHHHHhCCCeEEEEecCc
Confidence 45999999999999999999999999999964
No 279
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=96.87 E-value=0.0018 Score=53.10 Aligned_cols=33 Identities=9% Similarity=0.208 Sum_probs=30.1
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
+|+|||+|..|+-+|..+++.|.+|+|+|+.+.
T Consensus 63 DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~ 95 (506)
T PRK06481 63 DIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPV 95 (506)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 459999999999999999999999999998654
No 280
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.87 E-value=0.0018 Score=53.47 Aligned_cols=49 Identities=20% Similarity=0.091 Sum_probs=38.5
Q ss_pred CCeEEecCCCCcccccCCCCCeEEecccCccc-c-----chhHHHHHHHHHHHHHHHHhh
Q psy5231 94 DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLY-F-----IDKQLLALGSGCMAALDAQRY 147 (148)
Q Consensus 94 ~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~-~-----~~~~~~A~~~G~~aA~~i~~~ 147 (148)
-|.+.+|.. .+|++||+||+|++++.. + -..+..|+-.|++|+.++.++
T Consensus 348 ~GGi~vd~~-----~~t~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~ 402 (543)
T PRK06263 348 MGGIRINED-----CETNIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAKN 402 (543)
T ss_pred cCCEEECCC-----CcccCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHHH
Confidence 367889998 899999999999986431 0 124567889999999998765
No 281
>PLN02676 polyamine oxidase
Probab=96.85 E-value=0.0018 Score=52.95 Aligned_cols=36 Identities=14% Similarity=0.306 Sum_probs=31.4
Q ss_pred eEEEEcCchHHHHHHHHHhhcCC-eEEEEEeCCCCCc
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAK-KVTLIHRNEKLRC 52 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~~~ 52 (148)
+|+|||+|.+|+-+|..|++.|. +|+++|+++++.+
T Consensus 28 ~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG 64 (487)
T PLN02676 28 SVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGG 64 (487)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCC
Confidence 34999999999999999999997 6999999876543
No 282
>KOG1399|consensus
Probab=96.85 E-value=0.00088 Score=54.15 Aligned_cols=41 Identities=32% Similarity=0.278 Sum_probs=37.5
Q ss_pred chhhhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEe
Q psy5231 2 QYEFGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHR 46 (148)
Q Consensus 2 ~~~~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~ 46 (148)
+|..+..+.||+| +|||.|++|+|+|..++..+++|++..+
T Consensus 177 ~Yk~~e~f~~k~V----lVIG~g~SG~DIs~d~~~~ak~v~~~~~ 217 (448)
T KOG1399|consen 177 DYKSPEKFRDKVV----LVVGCGNSGMDISLDLLRVAKEVHLSVV 217 (448)
T ss_pred hccCcccccCceE----EEECCCccHHHHHHHHHHhccCcceeee
Confidence 6888889999999 9999999999999999999999998864
No 283
>PRK06996 hypothetical protein; Provisional
Probab=96.82 E-value=0.0017 Score=51.48 Aligned_cols=31 Identities=23% Similarity=0.401 Sum_probs=27.6
Q ss_pred EEEEcCchHHHHHHHHHhhcC----CeEEEEEeCC
Q psy5231 18 TDVIGGGNTAVEEALYLSNIA----KKVTLIHRNE 48 (148)
Q Consensus 18 v~ViGgG~~g~e~A~~l~~~g----~~Vtlv~~~~ 48 (148)
|+|||||++|+-+|..|++.| .+|+|+++.+
T Consensus 14 v~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 14 IAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred EEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 499999999999999999986 4799999853
No 284
>PRK09077 L-aspartate oxidase; Provisional
Probab=96.82 E-value=0.0024 Score=52.80 Aligned_cols=49 Identities=20% Similarity=0.098 Sum_probs=37.9
Q ss_pred CCeEEecCCCCcccccCCCCCeEEecccCc-c-cc-----chhHHHHHHHHHHHHHHHHhh
Q psy5231 94 DGYIKTKLNKKTGYTSTNISGVFCRWRCTR-L-YF-----IDKQLLALGSGCMAALDAQRY 147 (148)
Q Consensus 94 ~g~i~vd~~~~~~~~~t~~~~vya~GD~~~-~-~~-----~~~~~~A~~~G~~aA~~i~~~ 147 (148)
-|.|.+|.. .+|++||+||+|+|+. + .+ -..+..|+-.|++|+.++..+
T Consensus 353 ~GGi~vd~~-----~~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~ 408 (536)
T PRK09077 353 CGGVMVDLH-----GRTDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILSR 408 (536)
T ss_pred cCCeeECCC-----CccccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHHh
Confidence 367888988 8999999999999863 2 11 125678888999999988654
No 285
>PLN02661 Putative thiazole synthesis
Probab=96.81 E-value=0.0021 Score=50.43 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=29.0
Q ss_pred eEEEEcCchHHHHHHHHHhhc-CCeEEEEEeCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNI-AKKVTLIHRNEK 49 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~ 49 (148)
+|+|||+|.+|+-+|..|++. |.+|+++++...
T Consensus 94 DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~ 127 (357)
T PLN02661 94 DVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVS 127 (357)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcc
Confidence 449999999999999999975 899999998543
No 286
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=96.81 E-value=0.0018 Score=53.04 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=28.6
Q ss_pred eEEEEcCchHHHHHHHHHhhc--CCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNI--AKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~ 48 (148)
+|+|||||.+|+-+|.+|++. +.+|+|+||.+
T Consensus 7 DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~ 40 (494)
T PRK05257 7 DVVLIGGGIMSATLGTLLKELEPEWSITMFERLD 40 (494)
T ss_pred eEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence 459999999999999999985 78999999854
No 287
>PLN03000 amine oxidase
Probab=96.81 E-value=0.0021 Score=55.77 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=32.9
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC 52 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~ 52 (148)
++|+|||+|.+|+.+|..|.+.|.+|++++.++++.+
T Consensus 185 ~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGG 221 (881)
T PLN03000 185 SSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGG 221 (881)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCC
Confidence 3459999999999999999999999999999877654
No 288
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=96.80 E-value=0.0019 Score=52.22 Aligned_cols=36 Identities=28% Similarity=0.081 Sum_probs=32.9
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC 52 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~ 52 (148)
+|+|||+|..++-+|..|++.|++|.++++.+.+++
T Consensus 6 DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG 41 (443)
T PTZ00363 6 DVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGG 41 (443)
T ss_pred eEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCc
Confidence 359999999999999999999999999999887755
No 289
>PLN02546 glutathione reductase
Probab=96.80 E-value=0.0019 Score=53.69 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=28.3
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEe
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHR 46 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~ 46 (148)
+|+|||+|+.|..+|..+++.|++|.|+|+
T Consensus 81 DvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 81 DLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 359999999999999999999999999995
No 290
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=96.79 E-value=0.0024 Score=53.53 Aligned_cols=49 Identities=22% Similarity=0.195 Sum_probs=38.2
Q ss_pred CCeEEecCCCCcccccCCCCCeEEecccCccc-c-----chhHHHHHHHHHHHHHHHHhh
Q psy5231 94 DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLY-F-----IDKQLLALGSGCMAALDAQRY 147 (148)
Q Consensus 94 ~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~-~-----~~~~~~A~~~G~~aA~~i~~~ 147 (148)
.|.|.+|.. .+|++||+||+|+|++.. + -..+..++-.|++||.++..+
T Consensus 370 ~gG~~~d~~-----~~t~i~gL~a~Ge~~~~~hg~nrl~~~sl~~~~v~g~~Ag~~aa~~ 424 (603)
T TIGR01811 370 MGGLWVDYD-----QMTNIPGLFAAGECDFSQHGANRLGANSLLSAIADGYFALPFTIPN 424 (603)
T ss_pred CCCeeECCC-----CcccCCCEEECcccccCcCCCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 377899998 999999999999986432 0 135677888899999887654
No 291
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.77 E-value=0.0026 Score=52.91 Aligned_cols=48 Identities=17% Similarity=0.181 Sum_probs=37.3
Q ss_pred CeEEecCCCCcccccCC-CCCeEEecccCcc--cc-----chhHHHHHHHHHHHHHHHHhh
Q psy5231 95 GYIKTKLNKKTGYTSTN-ISGVFCRWRCTRL--YF-----IDKQLLALGSGCMAALDAQRY 147 (148)
Q Consensus 95 g~i~vd~~~~~~~~~t~-~~~vya~GD~~~~--~~-----~~~~~~A~~~G~~aA~~i~~~ 147 (148)
|.|.+|.. .+|+ +||+||+|+|++. .+ -..+..++-.|++|+.++.++
T Consensus 347 GGi~vd~~-----~~t~~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~ 402 (566)
T PRK06452 347 GGIDVDID-----GRNPDIVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVVQF 402 (566)
T ss_pred CCeEECCC-----CCcCCcCCeEecccccccCCCCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 67888887 8885 9999999999642 11 125678889999999998765
No 292
>KOG2415|consensus
Probab=96.76 E-value=0.01 Score=47.67 Aligned_cols=31 Identities=16% Similarity=0.395 Sum_probs=25.0
Q ss_pred eEEEEcCchHHHHHHHHHhhc------CCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNI------AKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~------g~~Vtlv~~~ 47 (148)
+|+|||+|+.|+.+|..|.+. ..+|.++|..
T Consensus 78 Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKa 114 (621)
T KOG2415|consen 78 DVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKA 114 (621)
T ss_pred cEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeec
Confidence 459999999999999998765 2467788764
No 293
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.75 E-value=0.0023 Score=44.57 Aligned_cols=34 Identities=32% Similarity=0.319 Sum_probs=31.2
Q ss_pred hhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEE
Q psy5231 8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIH 45 (148)
Q Consensus 8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~ 45 (148)
...|+++ +|||||.+|..-+..|.+.|.+|++|.
T Consensus 10 ~l~~~~v----lVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 10 NLHNKVV----VIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred EcCCCEE----EEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 4578888 999999999999999999999999994
No 294
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=96.75 E-value=0.0027 Score=52.69 Aligned_cols=36 Identities=17% Similarity=0.288 Sum_probs=30.9
Q ss_pred eEEEEcCchHHHHHHHHHhhc----CCeEEEEEeCCCCCc
Q psy5231 17 FTDVIGGGNTAVEEALYLSNI----AKKVTLIHRNEKLRC 52 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~----g~~Vtlv~~~~~~~~ 52 (148)
+++|||||..|+.+|..|.+. |.+|||+|+.+.+.+
T Consensus 24 ~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG 63 (576)
T PRK13977 24 KAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGG 63 (576)
T ss_pred eEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCC
Confidence 459999999999999999985 679999999776543
No 295
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=96.75 E-value=0.0022 Score=51.92 Aligned_cols=32 Identities=28% Similarity=0.351 Sum_probs=26.2
Q ss_pred eEEEEcCchHHHHHHHHHhhcC---CeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIA---KKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g---~~Vtlv~~~~ 48 (148)
+|+|||||..|.-+|..|++.+ .+|||||+.+
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~ 35 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPD 35 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCC
Confidence 4699999999999999999998 8899999864
No 296
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.74 E-value=0.0025 Score=54.83 Aligned_cols=33 Identities=33% Similarity=0.459 Sum_probs=30.0
Q ss_pred eEEEEcCchHHHHHHHHHhhc--CCeEEEEEeCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNI--AKKVTLIHRNEK 49 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~ 49 (148)
+|+|||||+.|+-+|..|++. |.+|+|+|+.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 469999999999999999998 899999998654
No 297
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=96.73 E-value=0.0029 Score=47.85 Aligned_cols=36 Identities=22% Similarity=0.194 Sum_probs=29.5
Q ss_pred eEEEEcCchHHHHHHHHHhhcC-CeEEEEEeCCCCCc
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIA-KKVTLIHRNEKLRC 52 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~~~ 52 (148)
+++|||+|..|+-+|..|++.+ .+|.|+|+.+....
T Consensus 2 D~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~ 38 (296)
T PF00732_consen 2 DYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPP 38 (296)
T ss_dssp EEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTT
T ss_pred CEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCcc
Confidence 4599999999999999999997 69999999876543
No 298
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=96.73 E-value=0.0025 Score=52.32 Aligned_cols=32 Identities=25% Similarity=0.247 Sum_probs=28.9
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
+|+|||+| +|+-+|..+++.|.+|+|+++.+.
T Consensus 9 DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~ 40 (513)
T PRK12837 9 DVLVAGSG-GGVAGAYTAAREGLSVALVEATDK 40 (513)
T ss_pred CEEEECch-HHHHHHHHHHHCCCcEEEEecCCC
Confidence 45999999 999999999999999999997543
No 299
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=96.72 E-value=0.0024 Score=52.36 Aligned_cols=32 Identities=34% Similarity=0.467 Sum_probs=28.5
Q ss_pred eEEEEcCchHHHHHHHHHhhcC--CeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIA--KKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~ 48 (148)
+|+|||||.+|+-+|.+|++.+ .+|+|+|+.+
T Consensus 47 DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~ 80 (497)
T PTZ00383 47 DVVIVGGGVTGTALFYTLSKFTNLKKIALIERRS 80 (497)
T ss_pred cEEEECccHHHHHHHHHHHhhCCCCEEEEEecCc
Confidence 5699999999999999999964 6999999864
No 300
>PLN02697 lycopene epsilon cyclase
Probab=96.72 E-value=0.0024 Score=52.71 Aligned_cols=31 Identities=26% Similarity=0.213 Sum_probs=28.8
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+|+|||||++|+.+|..|++.|.+|.++++.
T Consensus 110 DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~ 140 (529)
T PLN02697 110 DLVVIGCGPAGLALAAESAKLGLNVGLIGPD 140 (529)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence 5699999999999999999999999999864
No 301
>PTZ00058 glutathione reductase; Provisional
Probab=96.72 E-value=0.0024 Score=53.15 Aligned_cols=31 Identities=29% Similarity=0.368 Sum_probs=29.0
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+|+|||+|+.|..+|..+++.|.+|.+|++.
T Consensus 50 DvvVIG~G~aG~~aA~~aa~~G~~ValIEk~ 80 (561)
T PTZ00058 50 DLIVIGGGSGGMAAARRAARNKAKVALVEKD 80 (561)
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence 4699999999999999999999999999974
No 302
>PLN02568 polyamine oxidase
Probab=96.72 E-value=0.0028 Score=52.43 Aligned_cols=34 Identities=18% Similarity=0.307 Sum_probs=30.1
Q ss_pred EEEEcCchHHHHHHHHHhhcC-----CeEEEEEeCCCCC
Q psy5231 18 TDVIGGGNTAVEEALYLSNIA-----KKVTLIHRNEKLR 51 (148)
Q Consensus 18 v~ViGgG~~g~e~A~~l~~~g-----~~Vtlv~~~~~~~ 51 (148)
|+|||+|.+|+-+|..|++.| .+|+|+|+++++.
T Consensus 8 v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~G 46 (539)
T PLN02568 8 IVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIG 46 (539)
T ss_pred EEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcC
Confidence 499999999999999999877 8999999876653
No 303
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=96.72 E-value=0.0028 Score=52.79 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=30.0
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
+|+|||+|..|+.+|..+++.|.+|+|+++...
T Consensus 11 DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~ 43 (574)
T PRK12842 11 DVLVIGSGAGGLSAAITARKLGLDVVVLEKEPV 43 (574)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 459999999999999999999999999998654
No 304
>PRK08401 L-aspartate oxidase; Provisional
Probab=96.72 E-value=0.0027 Score=51.56 Aligned_cols=32 Identities=25% Similarity=0.425 Sum_probs=29.4
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
.+|+|||+|.+|+-+|..+++.|.+|+|+++.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~ 33 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPG 33 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCC
Confidence 35699999999999999999999999999874
No 305
>PRK08071 L-aspartate oxidase; Provisional
Probab=96.71 E-value=0.0032 Score=51.71 Aligned_cols=48 Identities=25% Similarity=0.128 Sum_probs=36.7
Q ss_pred CeEEecCCCCcccccCCCCCeEEecccCc-c-cc-----chhHHHHHHHHHHHHHHHHhh
Q psy5231 95 GYIKTKLNKKTGYTSTNISGVFCRWRCTR-L-YF-----IDKQLLALGSGCMAALDAQRY 147 (148)
Q Consensus 95 g~i~vd~~~~~~~~~t~~~~vya~GD~~~-~-~~-----~~~~~~A~~~G~~aA~~i~~~ 147 (148)
|.|.+|.. .+|++||+||+|+|+. . .+ -..+..+.-.|++|+.++..+
T Consensus 333 GGi~vd~~-----~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~ 387 (510)
T PRK08071 333 GGVKTNLD-----GETSIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAEHILTK 387 (510)
T ss_pred CCEEECCC-----CcccCCCeEEcccccccccCCCcccchHHHHHHHHHHHHHHHHHHhh
Confidence 77899998 8999999999999964 1 10 024567778889999888653
No 306
>PRK07804 L-aspartate oxidase; Provisional
Probab=96.70 E-value=0.003 Score=52.25 Aligned_cols=48 Identities=19% Similarity=0.103 Sum_probs=35.5
Q ss_pred CeEEecCCCCcccccCCCCCeEEecccCcc--cc-c----hhHHHHHHHHHHHHHHHHhh
Q psy5231 95 GYIKTKLNKKTGYTSTNISGVFCRWRCTRL--YF-I----DKQLLALGSGCMAALDAQRY 147 (148)
Q Consensus 95 g~i~vd~~~~~~~~~t~~~~vya~GD~~~~--~~-~----~~~~~A~~~G~~aA~~i~~~ 147 (148)
|.|.+|.. ++|++||+||+|||+.. .+ . ..+..+.-.|++|+.++.++
T Consensus 358 GGi~vd~~-----~~t~i~GLyAaGe~~~~g~hGa~~l~~~sl~~~~v~G~~ag~~aa~~ 412 (541)
T PRK07804 358 GGVVTDVY-----GRTSVPGLYAAGEVACTGVHGANRLASNSLLEGLVVGERAGAAAAAH 412 (541)
T ss_pred CCEEECCC-----CcccCCCeEEcccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHh
Confidence 77899988 89999999999999631 10 0 13455667788888887654
No 307
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=96.69 E-value=0.0029 Score=51.90 Aligned_cols=30 Identities=13% Similarity=0.272 Sum_probs=28.4
Q ss_pred eEEEEcCchHHHHHHHHHhhc--CCeEEEEEe
Q psy5231 17 FTDVIGGGNTAVEEALYLSNI--AKKVTLIHR 46 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~ 46 (148)
+|+|||||.+|+.+|..|++. +.+|+|+||
T Consensus 8 DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr 39 (497)
T PRK13339 8 DVVLVGAGILSTTFGVLLKELDPDWNIEVVER 39 (497)
T ss_pred CEEEECchHHHHHHHHHHHhCCCCCeEEEEEc
Confidence 459999999999999999998 899999999
No 308
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=96.69 E-value=0.0018 Score=51.57 Aligned_cols=31 Identities=29% Similarity=0.466 Sum_probs=28.5
Q ss_pred EEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 19 DVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 19 ~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
+|||||++|+-+|..+++.|.+|+|+|+.+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~ 31 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKK 31 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCcc
Confidence 4899999999999999999999999998654
No 309
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=96.69 E-value=0.0029 Score=52.48 Aligned_cols=32 Identities=13% Similarity=0.183 Sum_probs=29.1
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||+|.+|+-+|..+++.|.+|+|+++..
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~ 32 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVY 32 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence 36999999999999999999999999999743
No 310
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=96.68 E-value=0.0032 Score=50.58 Aligned_cols=34 Identities=26% Similarity=0.383 Sum_probs=30.4
Q ss_pred eEEEEcCchHHHHHHHHHhhcC--CeEEEEEeCCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIA--KKVTLIHRNEKL 50 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~ 50 (148)
+|+|||||.+|+.+|.+|++.. .+|+|+|+.+.+
T Consensus 5 DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~ 40 (429)
T COG0579 5 DVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGV 40 (429)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcc
Confidence 4699999999999999999998 999999995543
No 311
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=96.68 E-value=0.003 Score=51.01 Aligned_cols=32 Identities=16% Similarity=0.344 Sum_probs=29.4
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCe-EEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKK-VTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~-Vtlv~~~~ 48 (148)
+|+|||||++|+-+|..|.+.|.. +.++|+.+
T Consensus 10 ~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~ 42 (443)
T COG2072 10 DVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRD 42 (443)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCcEEEEEccC
Confidence 459999999999999999999988 99999865
No 312
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.66 E-value=0.0026 Score=53.19 Aligned_cols=49 Identities=29% Similarity=0.378 Sum_probs=38.6
Q ss_pred CCeEEecCCCCcccccCCCCCeEEecccCccc-c-----chhHHHHHHHHHHHHHHHHhh
Q psy5231 94 DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLY-F-----IDKQLLALGSGCMAALDAQRY 147 (148)
Q Consensus 94 ~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~-~-----~~~~~~A~~~G~~aA~~i~~~ 147 (148)
-|.|.+|.. .+|++||+||+|+|+... + -..+..|+-.|++|+.++.++
T Consensus 355 ~GGi~vd~~-----~~t~I~GLyAaGE~~~g~hGanrlggnsl~~~lv~Gr~Ag~~aa~~ 409 (589)
T PRK08641 355 MGGLWVDYD-----QMTNIPGLFAAGECDYSYHGANRLGANSLLSAIYGGMVAGPNAVEY 409 (589)
T ss_pred CCCeEECCC-----CCeECCCEEECcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHH
Confidence 378899998 899999999999987321 0 125678888999999988765
No 313
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.66 E-value=0.004 Score=42.50 Aligned_cols=47 Identities=23% Similarity=0.293 Sum_probs=36.6
Q ss_pred EEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCc
Q psy5231 18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKH 75 (148)
Q Consensus 18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~ 75 (148)
|+|+|+|.+|.-+|..|++.|.+|+++.|++ ..+.++ +.|+.+....
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-------~~~~~~----~~g~~~~~~~ 47 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-------RLEAIK----EQGLTITGPD 47 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-------HHHHHH----HHCEEEEETT
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-------cHHhhh----heeEEEEecc
Confidence 4899999999999999999999999998742 233344 4677776544
No 314
>PLN02507 glutathione reductase
Probab=96.65 E-value=0.0028 Score=51.95 Aligned_cols=30 Identities=30% Similarity=0.329 Sum_probs=28.3
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEe
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHR 46 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~ 46 (148)
+++|||+|+.|+.+|..+++.|++|.+|++
T Consensus 27 DvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 27 DLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 359999999999999999999999999995
No 315
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=96.63 E-value=0.0031 Score=51.25 Aligned_cols=30 Identities=27% Similarity=0.267 Sum_probs=28.5
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEe
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHR 46 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~ 46 (148)
+++|||||+.|+.+|..+++.|.+|.++++
T Consensus 6 DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 6 DVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 459999999999999999999999999997
No 316
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.63 E-value=0.0034 Score=45.47 Aligned_cols=35 Identities=26% Similarity=0.318 Sum_probs=31.5
Q ss_pred hhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEe
Q psy5231 8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHR 46 (148)
Q Consensus 8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~ 46 (148)
...|+++ +|||||.+|...+..|.+.|.+|+++.+
T Consensus 7 ~l~~k~v----LVIGgG~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 7 DLSNKRV----VIVGGGKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred EcCCCEE----EEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence 3567888 9999999999999999999999999974
No 317
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.61 E-value=0.003 Score=53.36 Aligned_cols=44 Identities=16% Similarity=0.100 Sum_probs=34.0
Q ss_pred CeEEecCCCCcccccCCCCCeEEecccCccc-c-----chhHHHHHHHHHHHHHH
Q psy5231 95 GYIKTKLNKKTGYTSTNISGVFCRWRCTRLY-F-----IDKQLLALGSGCMAALD 143 (148)
Q Consensus 95 g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~-~-----~~~~~~A~~~G~~aA~~ 143 (148)
|.|.+|.. .+|++||+||+|+|+... + -..+..|.-.|++|+.+
T Consensus 407 GGi~vd~~-----~~T~i~GLyAaGE~~~g~HGanRL~~nsL~e~lv~G~~ag~~ 456 (640)
T PRK07573 407 GGLWVDYN-----LMSTIPGLFVIGEANFSDHGANRLGASALMQGLADGYFVLPY 456 (640)
T ss_pred CCEEECCC-----CccccCCEEECccccccCCCcccccchhHHHHHHHHHHHhHH
Confidence 67889998 999999999999997432 0 02467888888888755
No 318
>KOG1800|consensus
Probab=96.56 E-value=0.0076 Score=47.65 Aligned_cols=36 Identities=6% Similarity=-0.116 Sum_probs=27.8
Q ss_pred CCCCeEEecccCccccchhHHHHHHHHHHHHHHHHhh
Q psy5231 111 NISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRY 147 (148)
Q Consensus 111 ~~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~ 147 (148)
..|++|++|=+..+| ..-+...+.++..+|..|...
T Consensus 370 ~~pglY~sGW~k~GP-~GvIattm~dAf~v~d~I~qD 405 (468)
T KOG1800|consen 370 CSPGLYASGWVKHGP-TGVIATTMQDAFEVADTIVQD 405 (468)
T ss_pred cCCceEEEeeeccCC-cceeeehhhhHHHHHHHHHHH
Confidence 359999999998876 445667788888888887653
No 319
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.55 E-value=0.0089 Score=48.24 Aligned_cols=55 Identities=22% Similarity=0.247 Sum_probs=39.9
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCce
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHI 76 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~ 76 (148)
+|.|+|.|.+|+.+|..|.+.|.+|+++++..... ....... |+..|+.++++..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~-~~~~~~~----l~~~gi~~~~g~~ 56 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPE-LLERQQE----LEQEGITVKLGKP 56 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchh-hHHHHHH----HHHcCCEEEECCc
Confidence 35999999999999999999999999998764321 1111222 3357888876553
No 320
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=96.55 E-value=0.0042 Score=50.81 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=28.1
Q ss_pred eEEEEcCchHHHHHHHHHhhc-CCeEEEEEe
Q psy5231 17 FTDVIGGGNTAVEEALYLSNI-AKKVTLIHR 46 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~-g~~Vtlv~~ 46 (148)
+|+|||||+.|..+|..+++. |++|.||++
T Consensus 5 DviVIG~G~~G~~aA~~aa~~~g~~V~lie~ 35 (486)
T TIGR01423 5 DLVVIGAGSGGLEAGWNAATLYKKRVAVIDV 35 (486)
T ss_pred CEEEECCChHHHHHHHHHHHhcCCEEEEEec
Confidence 459999999999999999996 999999997
No 321
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.54 E-value=0.0041 Score=52.34 Aligned_cols=50 Identities=20% Similarity=0.190 Sum_probs=37.9
Q ss_pred CCeEEecCCCCcccccCCCCCeEEecccCccc------cchhHHHHHHHHHHHHHHHHhh
Q psy5231 94 DGYIKTKLNKKTGYTSTNISGVFCRWRCTRLY------FIDKQLLALGSGCMAALDAQRY 147 (148)
Q Consensus 94 ~g~i~vd~~~~~~~~~t~~~~vya~GD~~~~~------~~~~~~~A~~~G~~aA~~i~~~ 147 (148)
-|.|.+|... .+|++||+||+|+|++.. +-..+..|+-.|++|+.++.++
T Consensus 391 ~GGi~vd~~~----~~t~IpGLYAaGE~agg~hGanrl~gnsl~~a~v~Gr~Ag~~aa~~ 446 (626)
T PRK07803 391 MGGVEVDPDT----GAATVPGLFAAGECAGGMHGSNRLGGNSLSDLLVFGRRAGLGAADY 446 (626)
T ss_pred cCCEEEcCCC----CeeecCCeeEccccccccCcCccccchhHHHHHHHHHHHHHHHHHH
Confidence 3778888762 469999999999986531 0136778889999999988765
No 322
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=96.54 E-value=0.0051 Score=50.20 Aligned_cols=48 Identities=23% Similarity=0.113 Sum_probs=37.4
Q ss_pred CeEEecCCCCcccccCCCCCeEEecccCc-c-cc-----chhHHHHHHHHHHHHHHHHhh
Q psy5231 95 GYIKTKLNKKTGYTSTNISGVFCRWRCTR-L-YF-----IDKQLLALGSGCMAALDAQRY 147 (148)
Q Consensus 95 g~i~vd~~~~~~~~~t~~~~vya~GD~~~-~-~~-----~~~~~~A~~~G~~aA~~i~~~ 147 (148)
|.|.+|.. .+|++||+||+|+|+. . .+ -..+..|+-.|++|+.++..+
T Consensus 334 GGi~vd~~-----~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~ 388 (488)
T TIGR00551 334 GGISVDDH-----GRTTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISRR 388 (488)
T ss_pred CCEEECCC-----CcccCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHHHHhh
Confidence 77899998 8999999999999963 2 10 125677888999999988653
No 323
>PRK09897 hypothetical protein; Provisional
Probab=96.53 E-value=0.0046 Score=51.13 Aligned_cols=35 Identities=11% Similarity=0.261 Sum_probs=29.1
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCC--eEEEEEeCCCC
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAK--KVTLIHRNEKL 50 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~--~Vtlv~~~~~~ 50 (148)
++|+|||||++|+-+|..|.+.+. +|+|++++..+
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~ 38 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEA 38 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCC
Confidence 456999999999999999987644 89999985543
No 324
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=96.51 E-value=0.0048 Score=49.52 Aligned_cols=34 Identities=15% Similarity=0.347 Sum_probs=31.5
Q ss_pred EEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC
Q psy5231 18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR 51 (148)
Q Consensus 18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~ 51 (148)
|+|+|+|.+|+-.|.+|.+.|.+|+++|-++++.
T Consensus 10 viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~G 43 (450)
T COG1231 10 VIIVGAGLAGLSAAYELKKAGYQVQILEARDRVG 43 (450)
T ss_pred EEEECCchHHHHHHHHHhhcCcEEEEEeccCCcC
Confidence 3999999999999999999999999999887764
No 325
>PRK07804 L-aspartate oxidase; Provisional
Probab=96.51 E-value=0.0048 Score=51.05 Aligned_cols=32 Identities=19% Similarity=0.320 Sum_probs=29.4
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||+|..|+-+|..+++.|.+|+|+++..
T Consensus 18 DVlVIG~G~AGl~AAi~aae~G~~VilleK~~ 49 (541)
T PRK07804 18 DVVVVGSGVAGLTAALAARRAGRRVLVVTKAA 49 (541)
T ss_pred CEEEECccHHHHHHHHHHHHcCCeEEEEEccC
Confidence 45999999999999999999999999999854
No 326
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.49 E-value=0.0042 Score=51.73 Aligned_cols=48 Identities=19% Similarity=0.176 Sum_probs=36.7
Q ss_pred CeEEecCCCCcccccCC------CCCeEEecccCcc--cc-----chhHHHHHHHHHHHHHHHHhh
Q psy5231 95 GYIKTKLNKKTGYTSTN------ISGVFCRWRCTRL--YF-----IDKQLLALGSGCMAALDAQRY 147 (148)
Q Consensus 95 g~i~vd~~~~~~~~~t~------~~~vya~GD~~~~--~~-----~~~~~~A~~~G~~aA~~i~~~ 147 (148)
|.+.+|.. .+|+ +||+||+|+|++. .+ -..+..|+-.|++|+.++.++
T Consensus 353 GGi~vd~~-----~~t~~~~g~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~aa~~ 413 (577)
T PRK06069 353 GGIHTDVY-----GRVLTADGEWVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAAEY 413 (577)
T ss_pred CCceECCC-----CcCcCCCCCEeCCeEeccccccccccccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 55677777 8888 9999999999752 10 124678889999999988765
No 327
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.48 E-value=0.0048 Score=51.53 Aligned_cols=34 Identities=15% Similarity=0.234 Sum_probs=30.4
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 50 (148)
+|+|||+|..|+-+|..+++.|.+|.|+++.+..
T Consensus 13 DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~ 46 (584)
T PRK12835 13 DVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHF 46 (584)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 3599999999999999999999999999986543
No 328
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.48 E-value=0.0054 Score=43.59 Aligned_cols=32 Identities=28% Similarity=0.319 Sum_probs=27.5
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||+|..|..+|..++..|.+|+++.+++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 35999999999999999999999999998854
No 329
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=96.48 E-value=0.0052 Score=50.89 Aligned_cols=32 Identities=25% Similarity=0.354 Sum_probs=29.8
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||+|..|+-+|..+++.|.+|.|+++.+
T Consensus 6 DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 6 DVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 45999999999999999999999999999866
No 330
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.48 E-value=0.0048 Score=51.24 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=29.9
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
+|+|||+|..|+-+|..+++.|.+|.|+|+.+.
T Consensus 8 DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~ 40 (557)
T PRK12844 8 DVVVVGSGGGGMCAALAAADSGLEPLIVEKQDK 40 (557)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 359999999999999999999999999998644
No 331
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.47 E-value=0.0049 Score=51.53 Aligned_cols=31 Identities=19% Similarity=0.234 Sum_probs=28.6
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+|+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus 5 DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~ 35 (589)
T PRK08641 5 KVIVVGGGLAGLMATIKAAEAGVHVDLFSLV 35 (589)
T ss_pred cEEEECchHHHHHHHHHHHHcCCcEEEEEcc
Confidence 4699999999999999999999999999963
No 332
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.46 E-value=0.0049 Score=51.92 Aligned_cols=31 Identities=19% Similarity=0.317 Sum_probs=28.8
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+|+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus 10 DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~ 40 (626)
T PRK07803 10 DVVVIGAGGAGLRAAIEARERGLRVAVVCKS 40 (626)
T ss_pred cEEEECcCHHHHHHHHHHHHCCCCEEEEecc
Confidence 4599999999999999999999999999884
No 333
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.45 E-value=0.0053 Score=51.08 Aligned_cols=31 Identities=29% Similarity=0.333 Sum_probs=28.8
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+|+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus 7 DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~ 37 (566)
T PRK06452 7 DAVVIGGGLAGLMSAHEIASAGFKVAVISKV 37 (566)
T ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEEcc
Confidence 4599999999999999999999999999975
No 334
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=96.44 E-value=0.0065 Score=51.50 Aligned_cols=32 Identities=16% Similarity=0.113 Sum_probs=29.1
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||+|..|+-+|..+++.|.+|.|+++..
T Consensus 7 DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~ 38 (657)
T PRK08626 7 DALVIGAGLAGLRVAIAAAQRGLDTIVLSLVP 38 (657)
T ss_pred cEEEECccHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 45999999999999999999999999999743
No 335
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=96.42 E-value=0.0047 Score=51.73 Aligned_cols=38 Identities=24% Similarity=0.176 Sum_probs=32.1
Q ss_pred cccCC-CCCeEEecccCccccchhHHHHHHHHHHHHHHHHhh
Q psy5231 107 YTSTN-ISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRY 147 (148)
Q Consensus 107 ~~~t~-~~~vya~GD~~~~~~~~~~~~A~~~G~~aA~~i~~~ 147 (148)
+++|. +||+|++|++.+.. ....|+++|.+|+.|+.+.
T Consensus 351 ~le~k~~~gLf~AGqi~Gt~---Gy~eAaa~Gl~Ag~naa~~ 389 (617)
T TIGR00136 351 TLETKLIQGLFFAGQINGTT---GYEEAAAQGLMAGINAALK 389 (617)
T ss_pred hheeCCCCCeEEccccCCcc---hHHHHHHHHHHHHHHHHHH
Confidence 37776 89999999998865 3569999999999999875
No 336
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.42 E-value=0.025 Score=38.22 Aligned_cols=36 Identities=33% Similarity=0.356 Sum_probs=31.7
Q ss_pred hhcCCcccceEEEEcCchHHHHHHHHHhhcCCe-EEEEEeC
Q psy5231 8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIAKK-VTLIHRN 47 (148)
Q Consensus 8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~-Vtlv~~~ 47 (148)
...++++ +|+|+|-+|-..+..|...|.+ |+++.|.
T Consensus 9 ~l~~~~v----lviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 9 DLKGKRV----LVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TGTTSEE----EEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CcCCCEE----EEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 4567888 9999999999999999999876 9999885
No 337
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.39 E-value=0.0052 Score=50.19 Aligned_cols=30 Identities=30% Similarity=0.321 Sum_probs=28.4
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEe
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHR 46 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~ 46 (148)
+++|||+|+.|..+|..+++.|++|++|++
T Consensus 4 DvvVIG~G~aG~~aA~~aa~~G~~v~lie~ 33 (484)
T TIGR01438 4 DLIVIGGGSGGLAAAKEAADYGAKVMLLDF 33 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 459999999999999999999999999996
No 338
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=96.38 E-value=0.019 Score=44.13 Aligned_cols=31 Identities=26% Similarity=0.260 Sum_probs=29.0
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+|+|+|+|.+|.-+|..|++.|.+|+++.|+
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 3599999999999999999999999999985
No 339
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.36 E-value=0.0061 Score=51.06 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=28.6
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+|+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus 14 DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~ 44 (598)
T PRK09078 14 DVVVVGAGGAGLRATLGMAEAGLKTACITKV 44 (598)
T ss_pred CEEEECccHHHHHHHHHHHHcCCcEEEEEcc
Confidence 4599999999999999999999999999874
No 340
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.36 E-value=0.0063 Score=50.93 Aligned_cols=31 Identities=16% Similarity=0.349 Sum_probs=28.7
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+|+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus 14 DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~ 44 (591)
T PRK07057 14 DVVIVGAGGSGMRASLQLARAGLSVAVLSKV 44 (591)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEecc
Confidence 4599999999999999999999999999984
No 341
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.36 E-value=0.0063 Score=50.56 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=30.1
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
+|+|||+|..|+-+|..+++.|.+|+|+++.+.
T Consensus 9 DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~ 41 (557)
T PRK07843 9 DVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPH 41 (557)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 459999999999999999999999999998654
No 342
>PRK07512 L-aspartate oxidase; Provisional
Probab=96.36 E-value=0.0064 Score=50.01 Aligned_cols=49 Identities=18% Similarity=0.102 Sum_probs=37.5
Q ss_pred CCeEEecCCCCcccccCCCCCeEEecccCc--ccc-----chhHHHHHHHHHHHHHHHHhh
Q psy5231 94 DGYIKTKLNKKTGYTSTNISGVFCRWRCTR--LYF-----IDKQLLALGSGCMAALDAQRY 147 (148)
Q Consensus 94 ~g~i~vd~~~~~~~~~t~~~~vya~GD~~~--~~~-----~~~~~~A~~~G~~aA~~i~~~ 147 (148)
-|.|.+|.. .+|++||+||+|+|+. ..+ -..+..++-.|++|+.++..+
T Consensus 341 ~GGi~vd~~-----~~t~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~~ag~~aa~~ 396 (513)
T PRK07512 341 MGGIAVDAD-----GRSSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAEDIAGT 396 (513)
T ss_pred cCCEEECCC-----CccccCCEEecccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 378899998 8999999999999863 111 024667778899999988654
No 343
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.35 E-value=0.0076 Score=50.42 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=29.2
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||+|..|+-+|..+++.|.+|.|+++..
T Consensus 9 DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~ 40 (588)
T PRK08958 9 DAVVIGAGGAGMRAALQISQSGQSCALLSKVF 40 (588)
T ss_pred CEEEECccHHHHHHHHHHHHcCCcEEEEEccC
Confidence 45999999999999999999999999999853
No 344
>PRK08401 L-aspartate oxidase; Provisional
Probab=96.33 E-value=0.007 Score=49.14 Aligned_cols=48 Identities=19% Similarity=0.034 Sum_probs=37.0
Q ss_pred CCeEEecCCCCcccccCCCCCeEEecccCc-c-cc-----chhHHHHHHHHHHHHHHHHh
Q psy5231 94 DGYIKTKLNKKTGYTSTNISGVFCRWRCTR-L-YF-----IDKQLLALGSGCMAALDAQR 146 (148)
Q Consensus 94 ~g~i~vd~~~~~~~~~t~~~~vya~GD~~~-~-~~-----~~~~~~A~~~G~~aA~~i~~ 146 (148)
-|.|.+|.. .+|++||+||+|+|+. . .+ -..+..++-.|++|+.++.+
T Consensus 310 ~GGi~vd~~-----~~t~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~~ag~~aa~ 364 (466)
T PRK08401 310 IGGISVDTF-----YRTGIKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVARTISR 364 (466)
T ss_pred CCCEEECCC-----CcccCCCEEECccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhh
Confidence 478899999 8999999999999963 2 11 12456778889999988754
No 345
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=96.33 E-value=0.0066 Score=51.09 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=28.8
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+|+|||||..|+-+|..+++.|.+|+|+++.
T Consensus 31 DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~ 61 (617)
T PTZ00139 31 DAVVVGAGGAGLRAALGLVELGYKTACISKL 61 (617)
T ss_pred CEEEECccHHHHHHHHHHHHcCCcEEEEecc
Confidence 4599999999999999999999999999874
No 346
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=96.31 E-value=0.0063 Score=47.34 Aligned_cols=30 Identities=27% Similarity=0.545 Sum_probs=28.5
Q ss_pred EEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
|+|||||..|+-|+..|.+.|+++.+|.+.
T Consensus 5 v~IIGGGLAGltc~l~l~~~Gk~c~iv~~g 34 (421)
T COG3075 5 VAIIGGGLAGLTCGLALQQAGKRCAIVNRG 34 (421)
T ss_pred EEEEcCcHHHHHHHHHHHhcCCcEEEEeCC
Confidence 599999999999999999999999999885
No 347
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=96.30 E-value=0.0087 Score=50.55 Aligned_cols=32 Identities=22% Similarity=0.208 Sum_probs=29.3
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||+|..|+-+|..+++.|.+|+|+++..
T Consensus 52 DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~ 83 (635)
T PLN00128 52 DAVVVGAGGAGLRAAIGLSEHGFNTACITKLF 83 (635)
T ss_pred CEEEECccHHHHHHHHHHHhcCCcEEEEEcCC
Confidence 46999999999999999999999999999853
No 348
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=96.30 E-value=0.0067 Score=51.40 Aligned_cols=49 Identities=12% Similarity=0.103 Sum_probs=38.0
Q ss_pred CCeEEecCCCCcccccC-CCCCeEEecccCcc--cc-----chhHHHHHHHHHHHHHHHHhh
Q psy5231 94 DGYIKTKLNKKTGYTST-NISGVFCRWRCTRL--YF-----IDKQLLALGSGCMAALDAQRY 147 (148)
Q Consensus 94 ~g~i~vd~~~~~~~~~t-~~~~vya~GD~~~~--~~-----~~~~~~A~~~G~~aA~~i~~~ 147 (148)
-|.|.+|.. .+| ++||+||+|+|+.. .+ -..+..++-.|++|+.++..+
T Consensus 372 mGGi~vd~~-----~~t~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa~~ 428 (657)
T PRK08626 372 MGGIRTNPT-----GESYGLKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVADF 428 (657)
T ss_pred cCCceECCC-----CCCcccCCEEecccccccCCCCCCccchHHHHHHHHHHHHHHHHHHHH
Confidence 377899998 888 59999999999641 11 125678888999999988765
No 349
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=96.27 E-value=0.0074 Score=50.24 Aligned_cols=49 Identities=20% Similarity=0.156 Sum_probs=35.6
Q ss_pred CCeEEecCCCCccccc---------CCCCCeEEecccCc-c-cc-----chhHHHHHHHHHHHHHHHHhh
Q psy5231 94 DGYIKTKLNKKTGYTS---------TNISGVFCRWRCTR-L-YF-----IDKQLLALGSGCMAALDAQRY 147 (148)
Q Consensus 94 ~g~i~vd~~~~~~~~~---------t~~~~vya~GD~~~-~-~~-----~~~~~~A~~~G~~aA~~i~~~ 147 (148)
-|.|.+|.. .+ |++||+||+|+|+. . .+ -..+..|+-.|++|+.++.++
T Consensus 331 ~GGi~id~~-----g~vl~~~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~a~vfGr~Ag~~aa~~ 395 (565)
T TIGR01816 331 MGGIPTNYH-----GQVLRDGNGNDQIVPGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAEY 395 (565)
T ss_pred cCCceeCCC-----ceEcccccCCCCccCCeeecccccccCCCccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 366777766 44 68999999999964 2 11 025677889999999998765
No 350
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=96.26 E-value=0.0067 Score=48.79 Aligned_cols=31 Identities=32% Similarity=0.458 Sum_probs=28.7
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+++|||+|..|+.+|..+++.|.+|+++++.
T Consensus 4 DviIIG~G~aGl~aA~~la~~g~~v~vi~~~ 34 (422)
T PRK05329 4 DVLVIGGGLAGLTAALAAAEAGKRVALVAKG 34 (422)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEECC
Confidence 4599999999999999999999999999874
No 351
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=96.26 E-value=0.0067 Score=50.93 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=28.6
Q ss_pred eEEEEcCchHHHHHHHHHhhc--CCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNI--AKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~ 47 (148)
+|+|||+|..|+-+|..+++. |.+|.|+++.
T Consensus 13 DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~ 45 (608)
T PRK06854 13 DILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKA 45 (608)
T ss_pred CEEEECcCHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 459999999999999999998 9999999974
No 352
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.26 E-value=0.0073 Score=50.36 Aligned_cols=31 Identities=13% Similarity=0.261 Sum_probs=28.2
Q ss_pred eEEEEcCchHHHHHHHHHhhcC---CeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIA---KKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g---~~Vtlv~~~ 47 (148)
+|+|||+|..|+-+|..+++.| .+|+|+++.
T Consensus 7 DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~ 40 (577)
T PRK06069 7 DVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKT 40 (577)
T ss_pred CEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcc
Confidence 4599999999999999999998 799999974
No 353
>KOG0685|consensus
Probab=96.26 E-value=0.0092 Score=48.26 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=30.5
Q ss_pred eEEEEcCchHHHHHHHHHhhc-CCeEEEEEeCCCCCc
Q psy5231 17 FTDVIGGGNTAVEEALYLSNI-AKKVTLIHRNEKLRC 52 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~~~ 52 (148)
+|+|||+|.+|+.+|..|.+. ..+|+++|-.+++.+
T Consensus 23 kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGG 59 (498)
T KOG0685|consen 23 KIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG 59 (498)
T ss_pred eEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCc
Confidence 349999999999999999965 578999998887754
No 354
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.24 E-value=0.0074 Score=50.99 Aligned_cols=31 Identities=19% Similarity=0.208 Sum_probs=28.6
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+|+|||+|..|+-+|..+++.|.+|+|++..
T Consensus 37 DVlVVG~G~AGl~AAi~Aae~G~~VilieK~ 67 (640)
T PRK07573 37 DVIVVGTGLAGASAAATLGELGYNVKVFCYQ 67 (640)
T ss_pred CEEEECccHHHHHHHHHHHHcCCcEEEEecC
Confidence 4699999999999999999999999999863
No 355
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=96.23 E-value=0.0054 Score=48.03 Aligned_cols=37 Identities=30% Similarity=0.361 Sum_probs=31.8
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCch
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCE 53 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~ 53 (148)
.+|+|||+|.+|+.+|..|++. .+|||+|-..++.+.
T Consensus 9 ~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGh 45 (447)
T COG2907 9 RKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGH 45 (447)
T ss_pred cceEEEcccchhhhhHHhhhcc-cceEEEeccccccCc
Confidence 3569999999999999999986 589999988777654
No 356
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.20 E-value=0.0052 Score=47.82 Aligned_cols=31 Identities=26% Similarity=0.308 Sum_probs=28.9
Q ss_pred EEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
|-|||||..|.|+|+.+++.|.+|.|.++++
T Consensus 6 i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp 36 (439)
T COG1206 6 INVIGAGLAGSEAAWQIAKRGVPVILYEMRP 36 (439)
T ss_pred eEEEcccccccHHHHHHHHcCCcEEEEEccc
Confidence 3899999999999999999999999999864
No 357
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=96.17 E-value=0.0097 Score=48.30 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=30.6
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 50 (148)
+++|||+|+.|.-+|..+++.|.+|.++++...+
T Consensus 6 DvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~l 39 (454)
T COG1249 6 DVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERL 39 (454)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCc
Confidence 4599999999999999999999999999997544
No 358
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.16 E-value=0.0088 Score=49.87 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=35.2
Q ss_pred CeEEecCCCCcccccC------CCCCeEEecccCcc--cc-----chhHHHHHHHHHHHHHHHHhh
Q psy5231 95 GYIKTKLNKKTGYTST------NISGVFCRWRCTRL--YF-----IDKQLLALGSGCMAALDAQRY 147 (148)
Q Consensus 95 g~i~vd~~~~~~~~~t------~~~~vya~GD~~~~--~~-----~~~~~~A~~~G~~aA~~i~~~ 147 (148)
|.+.+|.. .+| ++||+||+|++++. .+ -..+..|+-.|++|+.++..+
T Consensus 352 GGi~vd~~-----~~~~~~~~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~ 412 (575)
T PRK05945 352 GGIPVNTD-----GRVRRSADGLVEGFFAAGECACVSVHGANRLGSNSLLECVVYGRRTGAAIAEY 412 (575)
T ss_pred CCeeECCC-----ceeccCCCCccCCeEeeeccccccccccccccchhHHHHHHHHHHHHHHHHHH
Confidence 55677766 554 79999999999642 10 125678889999999998765
No 359
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=96.16 E-value=0.0096 Score=48.60 Aligned_cols=31 Identities=26% Similarity=0.413 Sum_probs=28.1
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||+|.+|+-+|..+++.|. |+|+++.+
T Consensus 4 DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~ 34 (488)
T TIGR00551 4 DVVVIGSGAAGLSAALALADQGR-VIVLSKAP 34 (488)
T ss_pred cEEEECccHHHHHHHHHHHhCCC-EEEEEccC
Confidence 46999999999999999999997 99999863
No 360
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.16 E-value=0.0088 Score=49.96 Aligned_cols=48 Identities=23% Similarity=0.241 Sum_probs=35.6
Q ss_pred CeEEecCCCCccccc------CCCCCeEEecccCc-c-cc-----chhHHHHHHHHHHHHHHHHhh
Q psy5231 95 GYIKTKLNKKTGYTS------TNISGVFCRWRCTR-L-YF-----IDKQLLALGSGCMAALDAQRY 147 (148)
Q Consensus 95 g~i~vd~~~~~~~~~------t~~~~vya~GD~~~-~-~~-----~~~~~~A~~~G~~aA~~i~~~ 147 (148)
|.+.+|.. .+ |++||+||+|+|+. . .+ -..+..|+-.|++|+.++.++
T Consensus 357 GGi~id~~-----~~v~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~ 417 (583)
T PRK08205 357 GGIPTTVD-----GEVLRDNTTVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAAEY 417 (583)
T ss_pred CCeeECCC-----ceEecCCCCCcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHHHHHH
Confidence 66777766 55 68999999999964 2 11 125677888999999988765
No 361
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.16 E-value=0.0082 Score=45.64 Aligned_cols=33 Identities=18% Similarity=0.109 Sum_probs=29.8
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
++|+|||+|..|..+|..|++.|.+|+++.+.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 456999999999999999999999999998754
No 362
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.14 E-value=0.0094 Score=46.27 Aligned_cols=33 Identities=12% Similarity=-0.080 Sum_probs=30.0
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
++|+|||+|..|..+|..++..|.+|+++.+.+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 455999999999999999999999999998864
No 363
>PRK06175 L-aspartate oxidase; Provisional
Probab=96.14 E-value=0.01 Score=47.75 Aligned_cols=48 Identities=19% Similarity=0.043 Sum_probs=37.3
Q ss_pred CCeEEecCCCCcccccCCCCCeEEecccCc-c-cc-----chhHHHHHHHHHHHHHHHHh
Q psy5231 94 DGYIKTKLNKKTGYTSTNISGVFCRWRCTR-L-YF-----IDKQLLALGSGCMAALDAQR 146 (148)
Q Consensus 94 ~g~i~vd~~~~~~~~~t~~~~vya~GD~~~-~-~~-----~~~~~~A~~~G~~aA~~i~~ 146 (148)
-|.|.+|.. .+|++||+||+|.++. . .+ -..+..++--|++||.+|..
T Consensus 331 ~GGi~vd~~-----~~t~i~gLYAaGE~a~~g~hG~nrl~gnsl~~~lvfGr~Ag~~a~~ 385 (433)
T PRK06175 331 MGGIKVDLN-----SKTSMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGAEKINS 385 (433)
T ss_pred cCCEEECCC-----ccccCCCeEecccccccCCCccccchhHHHHHHHHHHHHHHHHHHH
Confidence 377889988 8899999999999963 2 10 12467788999999998865
No 364
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.14 E-value=0.0073 Score=45.89 Aligned_cols=33 Identities=18% Similarity=0.117 Sum_probs=30.1
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
++|+|||+|..|..+|..|++.|.+|+++.+.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 567999999999999999999999999998754
No 365
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=96.11 E-value=0.0075 Score=50.61 Aligned_cols=31 Identities=23% Similarity=0.233 Sum_probs=28.7
Q ss_pred EEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
|+|||+|..|+-+|..+++.|.+|+|+++..
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence 3899999999999999999999999999864
No 366
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.10 E-value=0.022 Score=40.73 Aligned_cols=31 Identities=23% Similarity=0.183 Sum_probs=25.5
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+|.|+|-|.+|+-+|..|++.|.+|+.++..
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~ 32 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDID 32 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCC
Confidence 4699999999999999999999999999864
No 367
>PLN02815 L-aspartate oxidase
Probab=96.10 E-value=0.0096 Score=49.90 Aligned_cols=49 Identities=20% Similarity=0.072 Sum_probs=37.3
Q ss_pred CCeEEecCCCCcccccCCCCCeEEecccCc-c-cc-----chhHHHHHHHHHHHHHHHHhh
Q psy5231 94 DGYIKTKLNKKTGYTSTNISGVFCRWRCTR-L-YF-----IDKQLLALGSGCMAALDAQRY 147 (148)
Q Consensus 94 ~g~i~vd~~~~~~~~~t~~~~vya~GD~~~-~-~~-----~~~~~~A~~~G~~aA~~i~~~ 147 (148)
-|.|.+|.. .+|++||+||+|+|+. . .+ -..+..++-.|++|+..+..+
T Consensus 377 ~GGi~vD~~-----~~t~IpGLyAaGE~a~~G~hGanrl~gnsl~e~lvfGr~Ag~~aa~~ 432 (594)
T PLN02815 377 CGGVRTGLQ-----GETNVQGLYAAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDH 432 (594)
T ss_pred CCCeeECCC-----CceecCCEEecccccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 477889998 8999999999999964 2 11 125677788899998887543
No 368
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.10 E-value=0.011 Score=49.26 Aligned_cols=32 Identities=19% Similarity=0.382 Sum_probs=28.1
Q ss_pred eEEEEcCchHHHHHHHHHhhcC--CeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIA--KKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~ 48 (148)
+|+|||||..|+-+|..+++.+ .+|+|+++..
T Consensus 5 DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~ 38 (575)
T PRK05945 5 DVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTH 38 (575)
T ss_pred cEEEECccHHHHHHHHHHHHhcCCCcEEEEeccC
Confidence 4599999999999999999874 7999999853
No 369
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.09 E-value=0.0096 Score=43.86 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=30.4
Q ss_pred hcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEe
Q psy5231 9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHR 46 (148)
Q Consensus 9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~ 46 (148)
.++++| +|||||.+|..=+..|.+.|.+||+|..
T Consensus 23 ~~~~~V----LVVGGG~VA~RK~~~Ll~~gA~VtVVap 56 (223)
T PRK05562 23 SNKIKV----LIIGGGKAAFIKGKTFLKKGCYVYILSK 56 (223)
T ss_pred CCCCEE----EEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 347778 9999999999999999999999999974
No 370
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.08 E-value=0.0086 Score=45.66 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=29.9
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
+|.|||+|..|..+|..++..|.+|+++++.++
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 459999999999999999999999999998643
No 371
>PRK08275 putative oxidoreductase; Provisional
Probab=96.05 E-value=0.0099 Score=49.32 Aligned_cols=32 Identities=28% Similarity=0.335 Sum_probs=28.3
Q ss_pred eEEEEcCchHHHHHHHHHhhc--CCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNI--AKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~ 48 (148)
+|+|||+|..|+-+|..+++. |.+|+|+++..
T Consensus 11 DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~ 44 (554)
T PRK08275 11 DILVIGGGTAGPMAAIKAKERNPALRVLLLEKAN 44 (554)
T ss_pred CEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 459999999999999999986 68999999753
No 372
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.04 E-value=0.0095 Score=50.50 Aligned_cols=31 Identities=19% Similarity=0.194 Sum_probs=28.9
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+|+|||+|+.|..+|..+++.|.+|.+|++.
T Consensus 118 DviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 118 DVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 4599999999999999999999999999964
No 373
>PLN02815 L-aspartate oxidase
Probab=96.03 E-value=0.013 Score=49.10 Aligned_cols=31 Identities=29% Similarity=0.372 Sum_probs=28.0
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||+|..|+-+|..+++.| +|.|+++..
T Consensus 31 DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~ 61 (594)
T PLN02815 31 DFLVIGSGIAGLRYALEVAEYG-TVAIITKDE 61 (594)
T ss_pred CEEEECccHHHHHHHHHHhhCC-CEEEEECCC
Confidence 4699999999999999999999 899998754
No 374
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.03 E-value=0.011 Score=49.22 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=29.5
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 50 (148)
+|+|||+| .|+.+|...++.|.+|.|+|+.+.+
T Consensus 18 DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~ 50 (564)
T PRK12845 18 DLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYV 50 (564)
T ss_pred CEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCC
Confidence 56999999 7999999999999999999986554
No 375
>PRK06175 L-aspartate oxidase; Provisional
Probab=96.01 E-value=0.014 Score=46.97 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=27.7
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
+|+|||+|..|+-+|..+. .|.+|+|+++.+.
T Consensus 6 DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~ 37 (433)
T PRK06175 6 DVLIVGSGVAGLYSALNLR-KDLKILMVSKGKL 37 (433)
T ss_pred cEEEECchHHHHHHHHHhc-cCCCEEEEecCCC
Confidence 4599999999999999975 6999999998543
No 376
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=96.00 E-value=0.013 Score=48.93 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=29.8
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
+|+|||+|..|+-+|..+++.|.+|+|+++.+.
T Consensus 14 dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~ 46 (581)
T PRK06134 14 DVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPV 46 (581)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 459999999999999999999999999998543
No 377
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=95.98 E-value=0.013 Score=48.58 Aligned_cols=34 Identities=15% Similarity=0.078 Sum_probs=30.9
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 50 (148)
+|+|||+|++|+-+|..|++.|.+|.+|+++...
T Consensus 2 dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~ 35 (544)
T TIGR02462 2 DVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAAD 35 (544)
T ss_pred cEEEECCchHHHHHHHHHHHCCCeEEEEeccCcc
Confidence 4599999999999999999999999999997554
No 378
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=95.97 E-value=0.012 Score=49.59 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=27.8
Q ss_pred eEEEEcCchHHHHHHHHHh----hcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLS----NIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~----~~g~~Vtlv~~~ 47 (148)
+|+|||+|..|+-+|..++ +.|.+|+|+++.
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~ 35 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKA 35 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEcc
Confidence 3699999999999999998 679999999873
No 379
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.96 E-value=0.012 Score=44.61 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=28.7
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+|+|||+|.+|.-+|..|++.|.+|+++.|.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 3599999999999999999999999999984
No 380
>PRK02106 choline dehydrogenase; Validated
Probab=95.93 E-value=0.011 Score=49.04 Aligned_cols=33 Identities=24% Similarity=0.162 Sum_probs=29.9
Q ss_pred eEEEEcCchHHHHHHHHHhh-cCCeEEEEEeCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSN-IAKKVTLIHRNEK 49 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~~ 49 (148)
+++|||+|..|+-+|..|++ .|.+|.|+|+.+.
T Consensus 7 D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 7 DYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred cEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 34999999999999999999 7999999999853
No 381
>KOG1276|consensus
Probab=95.91 E-value=0.012 Score=47.21 Aligned_cols=38 Identities=29% Similarity=0.475 Sum_probs=30.6
Q ss_pred hcCCcccceEEEEcCchHHHHHHHHHhhcCCeEE--EEEeCCCC
Q psy5231 9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVT--LIHRNEKL 50 (148)
Q Consensus 9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vt--lv~~~~~~ 50 (148)
..+.++ +|+|||.+|+-+|.+|++...+++ |+|.+++.
T Consensus 9 ~~~~~v----aVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~Rv 48 (491)
T KOG1276|consen 9 VSGMTV----AVVGGGISGLCAAYYLARLGPDVTITLFEASPRV 48 (491)
T ss_pred eecceE----EEECCchhHHHHHHHHHhcCCCceEEEEecCCcc
Confidence 346666 999999999999999999977664 57876654
No 382
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.90 E-value=0.012 Score=43.34 Aligned_cols=32 Identities=34% Similarity=0.379 Sum_probs=29.4
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+++|+|+|..|...|..|++.|..|+++++.+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 45999999999999999999999999998853
No 383
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.88 E-value=0.014 Score=48.84 Aligned_cols=38 Identities=18% Similarity=0.046 Sum_probs=28.9
Q ss_pred CCCCCeEEecccCcc--cc-----chhHHHHHHHHHHHHHHHHhh
Q psy5231 110 TNISGVFCRWRCTRL--YF-----IDKQLLALGSGCMAALDAQRY 147 (148)
Q Consensus 110 t~~~~vya~GD~~~~--~~-----~~~~~~A~~~G~~aA~~i~~~ 147 (148)
|++||+||+|+|++. .+ -..+..|+-.|++|+.++.++
T Consensus 378 t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~ 422 (588)
T PRK08958 378 VVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQES 422 (588)
T ss_pred CccCCeEecccccccCCCCCccchhhHHHHHHHHHHHHHHHHHHH
Confidence 689999999998642 11 024678889999999988765
No 384
>PRK12839 hypothetical protein; Provisional
Probab=95.88 E-value=0.015 Score=48.50 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=30.4
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 50 (148)
+|+|||+|..|+-+|..+++.|.+|+++++.+.+
T Consensus 10 dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~ 43 (572)
T PRK12839 10 DVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTC 43 (572)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 4599999999999999999999999999986543
No 385
>PRK07395 L-aspartate oxidase; Provisional
Probab=95.88 E-value=0.013 Score=48.65 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=27.4
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||+|..|+-+|..+++ |.+|+|+++.+
T Consensus 11 DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~ 41 (553)
T PRK07395 11 DVLVVGSGAAGLYAALCLPS-HLRVGLITKDT 41 (553)
T ss_pred CEEEECccHHHHHHHHHhhc-CCCEEEEEccC
Confidence 46999999999999999875 99999999854
No 386
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.87 E-value=0.027 Score=42.99 Aligned_cols=39 Identities=23% Similarity=0.164 Sum_probs=34.8
Q ss_pred hhhhcCCcccceEEEEcCch-HHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 6 GILALIKPVIIFTDVIGGGN-TAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 6 g~~~~gk~v~~~v~ViGgG~-~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
++...|+++ +|||.|. +|.-+|..|.+.+..||+++++.
T Consensus 153 ~i~l~Gk~v----vVIGrs~~VG~pla~lL~~~gatVtv~~s~t 192 (286)
T PRK14175 153 DIDLEGKNA----VVIGRSHIVGQPVSKLLLQKNASVTILHSRS 192 (286)
T ss_pred CCCCCCCEE----EEECCCchhHHHHHHHHHHCCCeEEEEeCCc
Confidence 456789999 9999988 99999999999999999999753
No 387
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.87 E-value=0.013 Score=44.94 Aligned_cols=32 Identities=19% Similarity=0.254 Sum_probs=29.5
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|.|||+|..|..+|..|++.|.+|+++.+.+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 46999999999999999999999999999864
No 388
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=95.86 E-value=0.015 Score=48.46 Aligned_cols=32 Identities=34% Similarity=0.451 Sum_probs=29.2
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||+|..|+.+|..+++.|.+|+|+++.+
T Consensus 18 dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~ 49 (578)
T PRK12843 18 DVIVIGAGAAGMSAALFAAIAGLKVLLVERTE 49 (578)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 35999999999999999999999999999754
No 389
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.86 E-value=0.013 Score=49.13 Aligned_cols=39 Identities=15% Similarity=0.058 Sum_probs=29.5
Q ss_pred cCCCCCeEEecccCcc--cc-----chhHHHHHHHHHHHHHHHHhh
Q psy5231 109 STNISGVFCRWRCTRL--YF-----IDKQLLALGSGCMAALDAQRY 147 (148)
Q Consensus 109 ~t~~~~vya~GD~~~~--~~-----~~~~~~A~~~G~~aA~~i~~~ 147 (148)
.|++||+||+|+|+.. .+ -..+..|+-.|++|+.++..+
T Consensus 382 ~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~ 427 (598)
T PRK09078 382 DAVVPGLMAVGEAACVSVHGANRLGSNSLIDLVVFGRAAALRAAEV 427 (598)
T ss_pred CCccCceeecccccccCCcCcccccchhHHHHHHHHHHHHHHHHHh
Confidence 3689999999999642 11 125678889999999988765
No 390
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.85 E-value=0.013 Score=44.65 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=29.8
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
++|+|||+|..|..+|..|+..|.+|+++++.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 456999999999999999999999999998754
No 391
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.84 E-value=0.018 Score=44.26 Aligned_cols=32 Identities=19% Similarity=0.220 Sum_probs=29.2
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||+|.+|.-+|..|++.|.+|+++.|+.
T Consensus 7 ~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 7 RIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 35999999999999999999999999999853
No 392
>PRK07395 L-aspartate oxidase; Provisional
Probab=95.83 E-value=0.014 Score=48.60 Aligned_cols=46 Identities=22% Similarity=0.126 Sum_probs=35.0
Q ss_pred CCeEEecCCCCcccccCCCCCeEEecccCc--ccc-----chhHHHHHHHHHHHHHHH
Q psy5231 94 DGYIKTKLNKKTGYTSTNISGVFCRWRCTR--LYF-----IDKQLLALGSGCMAALDA 144 (148)
Q Consensus 94 ~g~i~vd~~~~~~~~~t~~~~vya~GD~~~--~~~-----~~~~~~A~~~G~~aA~~i 144 (148)
-|.|.+|.. .+|++||+||+|+|+. ..+ -..+..++-.|++|+.++
T Consensus 347 ~GGi~vd~~-----~~t~I~GLyAaGE~a~~G~hGanRL~gnsl~e~lvfG~~a~~~~ 399 (553)
T PRK07395 347 MGGVVTDLN-----NQTSIPGLYAVGETASTGVHGANRLASNSLLECLVFAAQLAQLE 399 (553)
T ss_pred CCCeeECCC-----CcccCCCEEECccccccCCCcccchHHHHHHHHHHHHHHHHHHH
Confidence 378899998 8999999999999863 111 024567777788888877
No 393
>PLN02976 amine oxidase
Probab=95.82 E-value=0.015 Score=53.06 Aligned_cols=36 Identities=19% Similarity=0.239 Sum_probs=32.1
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCc
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC 52 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~ 52 (148)
+|+|||+|..|+.+|..|.+.|.+|+++++++.+.+
T Consensus 695 dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGG 730 (1713)
T PLN02976 695 KIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGG 730 (1713)
T ss_pred cEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCC
Confidence 349999999999999999999999999999776644
No 394
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.81 E-value=0.068 Score=34.62 Aligned_cols=46 Identities=24% Similarity=0.276 Sum_probs=34.5
Q ss_pred EEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEc
Q psy5231 18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKL 73 (148)
Q Consensus 18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~ 73 (148)
++|+|.|..|.+++..|.+.+.+|+++++. +...+.+. ..++.++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d------~~~~~~~~----~~~~~~i~ 46 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRD------PERVEELR----EEGVEVIY 46 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESS------HHHHHHHH----HTTSEEEE
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECC------cHHHHHHH----hccccccc
Confidence 489999999999999999977799999874 34455555 35666554
No 395
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.78 E-value=0.012 Score=49.07 Aligned_cols=38 Identities=18% Similarity=0.033 Sum_probs=28.5
Q ss_pred CCCCCeEEecccCc-c-cc-----chhHHHHHHHHHHHHHHHHhh
Q psy5231 110 TNISGVFCRWRCTR-L-YF-----IDKQLLALGSGCMAALDAQRY 147 (148)
Q Consensus 110 t~~~~vya~GD~~~-~-~~-----~~~~~~A~~~G~~aA~~i~~~ 147 (148)
|++||+||+|+|+. . .+ -..+..|+-.|++|+.++..+
T Consensus 360 t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~ 404 (570)
T PRK05675 360 QIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEKA 404 (570)
T ss_pred CccCCeeecccccccCCCCccccccccHHHHHHHHHHHHHHHHHH
Confidence 47999999999864 2 11 124678889999999988765
No 396
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=95.77 E-value=0.016 Score=52.15 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=30.7
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
-+|+|||+|..|+-+|...++.|.+|+|+++.+.
T Consensus 410 ~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~ 443 (1167)
T PTZ00306 410 ARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAK 443 (1167)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCC
Confidence 4569999999999999999999999999998644
No 397
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.76 E-value=0.014 Score=44.35 Aligned_cols=33 Identities=21% Similarity=0.077 Sum_probs=29.6
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
++|+|||+|..|..+|..|+..|.+|+++.+.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 345999999999999999999999999998754
No 398
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.75 E-value=0.014 Score=48.25 Aligned_cols=30 Identities=20% Similarity=0.343 Sum_probs=27.6
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+|+|||+|.+|+-+|..+ +.|.+|+|+++.
T Consensus 9 DVlVVG~G~AGl~AAi~A-~~G~~VilleK~ 38 (543)
T PRK06263 9 DVLIIGSGGAGARAAIEA-ERGKNVVIVSKG 38 (543)
T ss_pred CEEEECccHHHHHHHHHH-hcCCCEEEEEcc
Confidence 469999999999999999 889999999984
No 399
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=95.75 E-value=0.017 Score=44.00 Aligned_cols=30 Identities=23% Similarity=0.251 Sum_probs=28.2
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEe
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHR 46 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~ 46 (148)
+|+|+|+|.+|.-+|..|++.|.+|+++.|
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 459999999999999999999999999987
No 400
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=95.75 E-value=0.018 Score=48.17 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=28.0
Q ss_pred eEEEEcCchHHHHHHHHHhhc--CCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNI--AKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~ 48 (148)
+|+|||+|..|+-+|..+++. +.+|+|+++..
T Consensus 6 DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~ 39 (582)
T PRK09231 6 DLAIIGAGGAGLRAAIAAAEANPNLKIALISKVY 39 (582)
T ss_pred eEEEECccHHHHHHHHHHHHhCCCCcEEEEEccC
Confidence 469999999999999999987 47999999853
No 401
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=95.73 E-value=0.016 Score=48.92 Aligned_cols=38 Identities=11% Similarity=-0.039 Sum_probs=29.0
Q ss_pred CCCCCeEEecccCc-c-cc-----chhHHHHHHHHHHHHHHHHhh
Q psy5231 110 TNISGVFCRWRCTR-L-YF-----IDKQLLALGSGCMAALDAQRY 147 (148)
Q Consensus 110 t~~~~vya~GD~~~-~-~~-----~~~~~~A~~~G~~aA~~i~~~ 147 (148)
|++||+||+|+|++ . .+ -..+..|+-.|++|+.++..+
T Consensus 421 t~IpGLYAaGE~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa~~ 465 (635)
T PLN00128 421 AVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEI 465 (635)
T ss_pred CccCceEeeeccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHh
Confidence 78999999999963 2 11 025788899999999988654
No 402
>PRK08071 L-aspartate oxidase; Provisional
Probab=95.72 E-value=0.017 Score=47.52 Aligned_cols=31 Identities=26% Similarity=0.289 Sum_probs=27.7
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||+|..|+-+|..+++ |.+|+|+++.+
T Consensus 5 DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~ 35 (510)
T PRK08071 5 DVIIIGSGIAALTVAKELCH-EYNVIIITKKT 35 (510)
T ss_pred CEEEECccHHHHHHHHHhhc-CCCEEEEeccC
Confidence 56999999999999999987 89999999743
No 403
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=95.70 E-value=0.019 Score=47.96 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=28.0
Q ss_pred eEEEEcCchHHHHHHHHHhhc--CCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNI--AKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~ 48 (148)
+|+|||+|..|+-+|..+++. |.+|+|+++..
T Consensus 5 DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~ 38 (580)
T TIGR01176 5 DIAVIGAGGAGLRAAIAAAEANPHLDVALISKVY 38 (580)
T ss_pred eEEEECccHHHHHHHHHHHHhCCCCcEEEEEccC
Confidence 469999999999999999986 57999999853
No 404
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.68 E-value=0.019 Score=48.14 Aligned_cols=48 Identities=17% Similarity=0.119 Sum_probs=36.2
Q ss_pred CeEEecCCCCcccccC---------CCCCeEEecccCc-c-cc-----chhHHHHHHHHHHHHHHHHhh
Q psy5231 95 GYIKTKLNKKTGYTST---------NISGVFCRWRCTR-L-YF-----IDKQLLALGSGCMAALDAQRY 147 (148)
Q Consensus 95 g~i~vd~~~~~~~~~t---------~~~~vya~GD~~~-~-~~-----~~~~~~A~~~G~~aA~~i~~~ 147 (148)
|.+.+|.. .+| ++||+||+|+|+. . .+ -..+..|+-.|++|+.++..+
T Consensus 362 GGi~vd~~-----g~~~~~~~~~g~~IpGLyAaGE~a~~g~hGanrl~gnsl~~~~v~Gr~Ag~~aa~~ 425 (591)
T PRK07057 362 GGIPTNIH-----GQVVGTSRDHKEPVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAGNHIVDH 425 (591)
T ss_pred CCeeECCC-----CcEeccccCCCCeeCCeEeCccccccCCCccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 67788877 665 7999999999864 2 10 025788899999999988754
No 405
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=95.68 E-value=0.26 Score=39.71 Aligned_cols=62 Identities=11% Similarity=-0.068 Sum_probs=37.0
Q ss_pred EEEcCchHHHHHHHHHh-hcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCceEEEEe
Q psy5231 19 DVIGGGNTAVEEALYLS-NIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKII 81 (148)
Q Consensus 19 ~ViGgG~~g~e~A~~l~-~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~~v~~i~ 81 (148)
+|+|-++.. +.-..|. ..|+.|.-+.-.+.-.....+.+.+.+.+++.|+.++.+++|.++.
T Consensus 228 AvlG~~~~~-~~~~~L~~~~g~~v~E~ptlPPSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~ 290 (419)
T TIGR03378 228 ACFGLGDGL-ELLRELEQATGLTLCELPTMPPSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAE 290 (419)
T ss_pred CeeCCCChH-HHHHHHHHHHCCCEEeCCCCCCCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEE
Confidence 467766632 2223343 3477776553322212235566777788888999999887776643
No 406
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.65 E-value=0.049 Score=38.39 Aligned_cols=35 Identities=31% Similarity=0.241 Sum_probs=31.0
Q ss_pred hcCCcccceEEEEcCch-HHHHHHHHHhhcCCeEEEEEeC
Q psy5231 9 ALIKPVIIFTDVIGGGN-TAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 9 ~~gk~v~~~v~ViGgG~-~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
..|+++ +|||+|. +|.-+|..|.+.|.+|+++.|.
T Consensus 42 l~gk~v----lViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 42 LAGKKV----VVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCCEE----EEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 567888 9999997 5888999999999999999885
No 407
>KOG1800|consensus
Probab=95.65 E-value=0.064 Score=42.62 Aligned_cols=61 Identities=11% Similarity=0.075 Sum_probs=42.7
Q ss_pred eEEEEcCchHHHHHHHHHhhc--CCeEEEEEeCCCCCc---------hH---HHHHHHHhHHhcCCcEEEcCceE
Q psy5231 17 FTDVIGGGNTAVEEALYLSNI--AKKVTLIHRNEKLRC---------EK---ILIDRLMQKVNEGKIDIKLKHIV 77 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~~~---------~~---~~~~~l~~~l~~~~v~i~~~~~v 77 (148)
+|+|||+|++|+-.|..|.+. +.+|+++|+.+..-+ ++ ...+...+.+++.+..+.-+.+|
T Consensus 22 ~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv~v 96 (468)
T KOG1800|consen 22 RVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNVKV 96 (468)
T ss_pred eEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceEEEeccee
Confidence 459999999999999888874 689999998654311 22 22333444445777888777665
No 408
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.62 E-value=0.019 Score=41.98 Aligned_cols=37 Identities=30% Similarity=0.349 Sum_probs=32.9
Q ss_pred hhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 7 ILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 7 ~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+...|++| +|||||.+|..=|..|.+.|.+|+++...
T Consensus 8 ~~l~~k~V----lvvGgG~va~rKa~~ll~~ga~v~Vvs~~ 44 (210)
T COG1648 8 LDLEGKKV----LVVGGGSVALRKARLLLKAGADVTVVSPE 44 (210)
T ss_pred EEcCCCEE----EEECCCHHHHHHHHHHHhcCCEEEEEcCC
Confidence 34678888 99999999999999999999999999753
No 409
>KOG2852|consensus
Probab=95.61 E-value=0.0057 Score=46.77 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=28.3
Q ss_pred ceEEEEcCchHHHHHHHHHhhcC------CeEEEEEeC
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIA------KKVTLIHRN 47 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g------~~Vtlv~~~ 47 (148)
|+|+|+|||.+|+-+|.+|++.+ .++|++|.+
T Consensus 11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~ 48 (380)
T KOG2852|consen 11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESK 48 (380)
T ss_pred eEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeec
Confidence 44599999999999999999987 789999974
No 410
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=95.60 E-value=0.025 Score=39.99 Aligned_cols=41 Identities=27% Similarity=0.169 Sum_probs=33.8
Q ss_pred hhhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 5 FGILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 5 ~g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
.+....|+++ .|+|-|.+|-++|..|..+|.+|+.+.+..+
T Consensus 30 ~~~~l~g~tv----gIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~ 70 (178)
T PF02826_consen 30 PGRELRGKTV----GIIGYGRIGRAVARRLKAFGMRVIGYDRSPK 70 (178)
T ss_dssp TBS-STTSEE----EEESTSHHHHHHHHHHHHTT-EEEEEESSCH
T ss_pred CccccCCCEE----EEEEEcCCcCeEeeeeecCCceeEEecccCC
Confidence 3445668888 9999999999999999999999999988643
No 411
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=95.59 E-value=0.021 Score=48.04 Aligned_cols=48 Identities=19% Similarity=0.059 Sum_probs=35.2
Q ss_pred CeEEecCCCCccccc----------CCCCCeEEecccCc-c-cc-----chhHHHHHHHHHHHHHHHHhh
Q psy5231 95 GYIKTKLNKKTGYTS----------TNISGVFCRWRCTR-L-YF-----IDKQLLALGSGCMAALDAQRY 147 (148)
Q Consensus 95 g~i~vd~~~~~~~~~----------t~~~~vya~GD~~~-~-~~-----~~~~~~A~~~G~~aA~~i~~~ 147 (148)
|.+.+|.. .+ |++||+||+|+|++ . .+ -..+..++-.|++|+.++.++
T Consensus 380 GGi~vd~~-----~~v~d~~~~~~~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~vfGr~Ag~~aa~~ 444 (617)
T PTZ00139 380 GGIPTNWK-----TQVLTQRNGDDDKIVPGLLAAGEAACASVHGANRLGANSLLDIVVFGRAAANTVMEI 444 (617)
T ss_pred CCeEEcCC-----ceeeccccccCCCccCCceecccccccCcCCCcccchhhHHHHHHHHHHHHHHHHHh
Confidence 66777766 44 37999999999863 2 11 025678889999999988765
No 412
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=95.56 E-value=0.019 Score=50.31 Aligned_cols=31 Identities=29% Similarity=0.367 Sum_probs=28.5
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+|+|||||..|+-+|..+++.|.+|+|+++.
T Consensus 15 DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~ 45 (897)
T PRK13800 15 DVLVIGGGTAGTMAALTAAEHGANVLLLEKA 45 (897)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEecc
Confidence 4599999999999999999999999999873
No 413
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=95.54 E-value=0.024 Score=47.29 Aligned_cols=34 Identities=26% Similarity=0.368 Sum_probs=30.3
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 50 (148)
+|+|||||..|+-+|..+++.|.+|.|+++....
T Consensus 8 DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~ 41 (562)
T COG1053 8 DVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPK 41 (562)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCcEEEEEccccC
Confidence 3599999999999999999999999999985443
No 414
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.54 E-value=0.02 Score=44.03 Aligned_cols=40 Identities=23% Similarity=0.028 Sum_probs=35.8
Q ss_pred hhhhhcCCcccceEEEEcCc-hHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 5 FGILALIKPVIIFTDVIGGG-NTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 5 ~g~~~~gk~v~~~v~ViGgG-~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
++....||++ +|||.| ..|.-+|..|.+.|..||++++..
T Consensus 153 ~~i~l~Gk~V----~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t 193 (301)
T PRK14194 153 TCGDLTGKHA----VVIGRSNIVGKPMAALLLQAHCSVTVVHSRS 193 (301)
T ss_pred hCCCCCCCEE----EEECCCCccHHHHHHHHHHCCCEEEEECCCC
Confidence 3667889999 999996 999999999999999999998764
No 415
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.52 E-value=0.019 Score=43.91 Aligned_cols=39 Identities=23% Similarity=0.171 Sum_probs=34.2
Q ss_pred hhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
++...|+++ +|+|.|.+|..+|..|..+|.+|+++.|..
T Consensus 146 ~~~l~gk~v----~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 146 DFTIHGSNV----MVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCCCCCCEE----EEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 345567888 999999999999999999999999998864
No 416
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.49 E-value=0.025 Score=43.12 Aligned_cols=39 Identities=26% Similarity=0.252 Sum_probs=34.7
Q ss_pred hhhhhcCCcccceEEEEcCch-HHHHHHHHHhhcCCeEEEEEeC
Q psy5231 5 FGILALIKPVIIFTDVIGGGN-TAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 5 ~g~~~~gk~v~~~v~ViGgG~-~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
++....||++ +|+|.|. +|--+|..|.+.|..||+++++
T Consensus 153 ~~i~l~Gk~v----vViG~gg~vGkpia~~L~~~gatVtv~~~~ 192 (283)
T PRK14192 153 YNIELAGKHA----VVVGRSAILGKPMAMMLLNANATVTICHSR 192 (283)
T ss_pred cCCCCCCCEE----EEECCcHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 4667889999 9999997 9999999999999999999873
No 417
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.47 E-value=0.027 Score=40.17 Aligned_cols=38 Identities=29% Similarity=0.382 Sum_probs=32.4
Q ss_pred hhhhcCCcccceEEEEcC-chHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 6 GILALIKPVIIFTDVIGG-GNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 6 g~~~~gk~v~~~v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
|....++++ +|+|| |.+|..+|..|.+.|.+|+++.|.
T Consensus 23 ~~~l~~~~v----lVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 23 GKDLKGKTA----VVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CcCCCCCEE----EEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 344567777 99997 999999999999999999999875
No 418
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.45 E-value=0.025 Score=45.83 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=28.2
Q ss_pred ceEEEEcCchHHHHHHHHHhhc--C-CeEEEEEeCCCC
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNI--A-KKVTLIHRNEKL 50 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~--g-~~Vtlv~~~~~~ 50 (148)
.+|+|||||++|+.+|..|.+. . ..+++++..+.+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~ 39 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF 39 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc
Confidence 3569999999999999999875 2 239999986654
No 419
>KOG2311|consensus
Probab=95.40 E-value=0.017 Score=47.11 Aligned_cols=30 Identities=27% Similarity=0.404 Sum_probs=27.8
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEe
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHR 46 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~ 46 (148)
+|+|||||-.|||+|...++.|.+++|++.
T Consensus 30 dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~ 59 (679)
T KOG2311|consen 30 DVVVIGGGHAGCEAAAAAARLGARTLLLTH 59 (679)
T ss_pred cEEEECCCccchHHHHHHHhcCCceEEeec
Confidence 459999999999999999999999999976
No 420
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=95.40 E-value=0.022 Score=46.97 Aligned_cols=32 Identities=25% Similarity=0.254 Sum_probs=29.2
Q ss_pred EEEEcCchHHHHHHHHHhhcC-CeEEEEEeCCC
Q psy5231 18 TDVIGGGNTAVEEALYLSNIA-KKVTLIHRNEK 49 (148)
Q Consensus 18 v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~ 49 (148)
++|||||..|+-+|..|++.+ .+|.|+|..+.
T Consensus 2 ~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 2 YIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred EEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 599999999999999999998 69999999753
No 421
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.39 E-value=0.23 Score=39.76 Aligned_cols=32 Identities=34% Similarity=0.402 Sum_probs=25.6
Q ss_pred EEEEcCchHHHHHHHHHhhc----CCeEEEEEeCCC
Q psy5231 18 TDVIGGGNTAVEEALYLSNI----AKKVTLIHRNEK 49 (148)
Q Consensus 18 v~ViGgG~~g~e~A~~l~~~----g~~Vtlv~~~~~ 49 (148)
|+|||||.+|.|+-..|... ..++.++.|+..
T Consensus 190 V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~g 225 (436)
T COG3486 190 VTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSG 225 (436)
T ss_pred EEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCC
Confidence 39999999999998888653 445888999654
No 422
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=95.38 E-value=0.027 Score=45.30 Aligned_cols=31 Identities=32% Similarity=0.418 Sum_probs=28.7
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+++|||+|.+|+-+|..+++.|.+|.++++.
T Consensus 2 Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~ 32 (419)
T TIGR03378 2 DVIIIGGGLAGLSCALRLAEAGKKCAIIAAG 32 (419)
T ss_pred CEEEECchHHHHHHHHHHHHCCCCEEEEeCC
Confidence 4599999999999999999999999999875
No 423
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.32 E-value=0.029 Score=46.87 Aligned_cols=30 Identities=10% Similarity=0.238 Sum_probs=26.9
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+|+|||+|..|+-+|..+++. .+|+|+++.
T Consensus 7 DVlVIG~G~AGl~AAl~aa~~-~~VilleK~ 36 (583)
T PRK08205 7 DVVIVGAGGAGMRAAIEAGPR-ARTAVLTKL 36 (583)
T ss_pred cEEEECccHHHHHHHHHHHhC-CCEEEEeCC
Confidence 459999999999999999986 899999974
No 424
>PRK09077 L-aspartate oxidase; Provisional
Probab=95.27 E-value=0.03 Score=46.30 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=27.4
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||+|..|+-+|..+++. .+|+|+++..
T Consensus 10 DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~ 40 (536)
T PRK09077 10 DVLIIGSGAAGLSLALRLAEH-RRVAVLSKGP 40 (536)
T ss_pred CEEEECchHHHHHHHHHHHHC-CCEEEEeccC
Confidence 469999999999999999886 7999999853
No 425
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.27 E-value=0.084 Score=42.80 Aligned_cols=57 Identities=21% Similarity=0.230 Sum_probs=41.0
Q ss_pred hcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcC
Q psy5231 9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLK 74 (148)
Q Consensus 9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~ 74 (148)
..++++ .|+|.|.+|+.+|..|.+.|.+|++.++.+... .+...+++. ..|+.++.+
T Consensus 12 ~~~~~i----~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~-~~~~~~~l~----~~gi~~~~~ 68 (458)
T PRK01710 12 IKNKKV----AVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEE-LGEVSNELK----ELGVKLVLG 68 (458)
T ss_pred hcCCeE----EEEcccHHHHHHHHHHHHCCCEEEEECCCCCcc-chHHHHHHH----hCCCEEEeC
Confidence 346777 999999999999999999999999988754321 122223333 568877654
No 426
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.26 E-value=0.045 Score=38.34 Aligned_cols=32 Identities=16% Similarity=0.148 Sum_probs=27.4
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
.+++|+|+|.+|..++..+..+|.+|+.++..
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~ 52 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER 52 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence 34599999999999999999999999999763
No 427
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=95.23 E-value=0.033 Score=44.74 Aligned_cols=38 Identities=18% Similarity=0.140 Sum_probs=32.9
Q ss_pred hhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+....|++| +|+|.|++|.-+|..+..+|.+|+++++.
T Consensus 197 ~~~l~GktV----vViG~G~IG~~va~~ak~~Ga~ViV~d~d 234 (413)
T cd00401 197 DVMIAGKVA----VVAGYGDVGKGCAQSLRGQGARVIVTEVD 234 (413)
T ss_pred CCCCCCCEE----EEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 334568888 99999999999999999999999998764
No 428
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=95.20 E-value=0.039 Score=42.05 Aligned_cols=33 Identities=18% Similarity=0.192 Sum_probs=29.5
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
++|.|||+|..|..+|..|+..|.+|+++++++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 345999999999999999999999999998754
No 429
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=95.18 E-value=0.037 Score=47.44 Aligned_cols=34 Identities=21% Similarity=0.127 Sum_probs=31.0
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
++|+|||+|..|..+|..++..|.+|++++.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 5679999999999999999999999999998644
No 430
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.18 E-value=0.028 Score=42.59 Aligned_cols=32 Identities=19% Similarity=0.190 Sum_probs=29.0
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||+|..|..+|..++..|.+|+++++.+
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 45999999999999999999999999998653
No 431
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=95.16 E-value=0.037 Score=39.99 Aligned_cols=38 Identities=24% Similarity=0.043 Sum_probs=32.7
Q ss_pred hhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+....|+++ +|+|.|.+|..+|..|.+.|.+|++..+.
T Consensus 23 ~~~l~gk~v----~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 23 TDSLEGKTV----AVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CCCCCCCEE----EEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 455677888 99999999999999999999999977653
No 432
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.16 E-value=0.041 Score=42.52 Aligned_cols=30 Identities=30% Similarity=0.388 Sum_probs=28.3
Q ss_pred EEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
|.|||+|..|.-+|..|++.|.+|+++.|+
T Consensus 3 I~IiGaGa~G~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 3 ISILGAGSFGTAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred EEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 599999999999999999999999999884
No 433
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.14 E-value=0.033 Score=42.67 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=29.4
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
++|.|||+|..|..+|..|++.|.+|+++.+.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 456999999999999999999999999998753
No 434
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=95.13 E-value=0.03 Score=45.30 Aligned_cols=49 Identities=12% Similarity=-0.083 Sum_probs=37.1
Q ss_pred CCeEEecCCCCcccccC------CCCCeEEecccCcc-c------cchhHHHHHHHHHHHHHHHHhh
Q psy5231 94 DGYIKTKLNKKTGYTST------NISGVFCRWRCTRL-Y------FIDKQLLALGSGCMAALDAQRY 147 (148)
Q Consensus 94 ~g~i~vd~~~~~~~~~t------~~~~vya~GD~~~~-~------~~~~~~~A~~~G~~aA~~i~~~ 147 (148)
-|.+.+|+. .++ .+||+||+|.+++. . +-..+..++-.|++|+.++..+
T Consensus 399 ~GGl~~d~~-----~~vl~~~g~~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~~ 460 (466)
T PRK08274 399 YLGLKVDED-----ARVRFADGRPSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAARH 460 (466)
T ss_pred cccEEECCC-----ceEECCCCCCCCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHHH
Confidence 467888887 554 79999999998654 1 0135678889999999998765
No 435
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=95.09 E-value=0.032 Score=38.55 Aligned_cols=30 Identities=20% Similarity=0.333 Sum_probs=25.8
Q ss_pred EEEcCchHHHHHHHHHhhc-----CCeEEEEEeCC
Q psy5231 19 DVIGGGNTAVEEALYLSNI-----AKKVTLIHRNE 48 (148)
Q Consensus 19 ~ViGgG~~g~e~A~~l~~~-----g~~Vtlv~~~~ 48 (148)
+|||+|++|+-++..|.+. ..+|+|+++.+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~ 35 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP 35 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence 5999999999999999877 46899999843
No 436
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=95.08 E-value=0.032 Score=39.06 Aligned_cols=38 Identities=26% Similarity=0.262 Sum_probs=28.9
Q ss_pred hhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+.+..||++ +|+|=|..|--+|..|+.+|.+|++.+..
T Consensus 18 ~~~l~Gk~v----vV~GYG~vG~g~A~~lr~~Ga~V~V~e~D 55 (162)
T PF00670_consen 18 NLMLAGKRV----VVIGYGKVGKGIARALRGLGARVTVTEID 55 (162)
T ss_dssp -S--TTSEE----EEE--SHHHHHHHHHHHHTT-EEEEE-SS
T ss_pred ceeeCCCEE----EEeCCCcccHHHHHHHhhCCCEEEEEECC
Confidence 456778998 99999999999999999999999999874
No 437
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=95.08 E-value=0.042 Score=47.14 Aligned_cols=34 Identities=15% Similarity=0.122 Sum_probs=31.0
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
++|+|||+|..|..+|..++..|.+|++++..++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH 347 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 6679999999999999999999999999998643
No 438
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=95.08 E-value=0.024 Score=46.84 Aligned_cols=30 Identities=37% Similarity=0.461 Sum_probs=27.6
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEe
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHR 46 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~ 46 (148)
+|+|||||-.|+|+|...+++|.++.|++.
T Consensus 6 DVIVIGgGHAG~EAA~AaARmG~ktlLlT~ 35 (621)
T COG0445 6 DVIVIGGGHAGVEAALAAARMGAKTLLLTL 35 (621)
T ss_pred ceEEECCCccchHHHHhhhccCCeEEEEEc
Confidence 359999999999999999999999998875
No 439
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=95.05 E-value=0.031 Score=46.39 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=30.2
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
+++|||+|..|+-+|..|+..+.+|.++|+...
T Consensus 9 D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~ 41 (542)
T COG2303 9 DYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGP 41 (542)
T ss_pred CEEEECCCchhHHHHHHhcCCCCeEEEEeCCCC
Confidence 459999999999999999999999999999754
No 440
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.94 E-value=0.046 Score=41.73 Aligned_cols=39 Identities=23% Similarity=0.199 Sum_probs=34.6
Q ss_pred hhhhhcCCcccceEEEEcCc-hHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 5 FGILALIKPVIIFTDVIGGG-NTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 5 ~g~~~~gk~v~~~v~ViGgG-~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
++....||++ +|||.| .+|.-+|..|.+.|..||+++..
T Consensus 151 ~~i~l~Gk~v----vVvGrs~~VG~Pla~lL~~~gAtVtv~hs~ 190 (285)
T PRK14191 151 YHIEIKGKDV----VIIGASNIVGKPLAMLMLNAGASVSVCHIL 190 (285)
T ss_pred hCCCCCCCEE----EEECCCchhHHHHHHHHHHCCCEEEEEeCC
Confidence 3667889999 999999 99999999999999999998753
No 441
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.93 E-value=0.044 Score=42.46 Aligned_cols=31 Identities=29% Similarity=0.260 Sum_probs=28.6
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+|+|||.|.+|.-+|..|++.|.+|+++.|+
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 4599999999999999999999999999874
No 442
>KOG0042|consensus
Probab=94.92 E-value=0.011 Score=48.61 Aligned_cols=32 Identities=28% Similarity=0.326 Sum_probs=29.9
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||||.+|.-||+..+.+|.+|-|+|+.+
T Consensus 69 DVLIIGGGAtGaGcALDA~TRGLktaLVE~~D 100 (680)
T KOG0042|consen 69 DVLIIGGGATGAGCALDAATRGLKTALVEAGD 100 (680)
T ss_pred cEEEECCCccCcceeehhhcccceeEEEeccc
Confidence 46999999999999999999999999999865
No 443
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=94.92 E-value=0.037 Score=42.72 Aligned_cols=32 Identities=22% Similarity=0.268 Sum_probs=29.0
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|+|+|.+|.-+|..|++.|.+|+++.|++
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 46999999999999999999999999998853
No 444
>KOG0404|consensus
Probab=94.92 E-value=0.2 Score=37.28 Aligned_cols=65 Identities=22% Similarity=0.224 Sum_probs=47.2
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC-----------------CCCCc------hHHHHHHHHhHHhcCCcEEEc
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN-----------------EKLRC------EKILIDRLMQKVNEGKIDIKL 73 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~-----------------~~~~~------~~~~~~~l~~~l~~~~v~i~~ 73 (148)
+|+|||+|+.+-.+|.++++.-.+-.|++.. +.+++ .+++.++++++-++.|.++++
T Consensus 10 ~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i~t 89 (322)
T KOG0404|consen 10 NVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEIIT 89 (322)
T ss_pred eEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcceeee
Confidence 3499999999999999999887666677641 11222 357788888877788999986
Q ss_pred CceEEEEec
Q psy5231 74 KHIVHKIIG 82 (148)
Q Consensus 74 ~~~v~~i~~ 82 (148)
. +|+++.-
T Consensus 90 E-tVskv~~ 97 (322)
T KOG0404|consen 90 E-TVSKVDL 97 (322)
T ss_pred e-ehhhccc
Confidence 4 4666543
No 445
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=94.91 E-value=0.23 Score=31.01 Aligned_cols=48 Identities=19% Similarity=0.172 Sum_probs=34.8
Q ss_pred eEEEEcCchHHHHHHHHHhhcC---CeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEE
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIA---KKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIK 72 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g---~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~ 72 (148)
+|.|||+|..|.-++.-|.+.| .+|+++..+ .++..+++.+ +.++.+.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r-----~~~~~~~~~~---~~~~~~~ 51 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR-----SPEKAAELAK---EYGVQAT 51 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES-----SHHHHHHHHH---HCTTEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC-----cHHHHHHHHH---hhccccc
Confidence 3589999999999999999999 899977332 2444455544 4555554
No 446
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=94.86 E-value=0.04 Score=36.08 Aligned_cols=32 Identities=16% Similarity=0.120 Sum_probs=28.1
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
|+|+|+|.|.+++.+...+.++|.++.++...
T Consensus 3 kkvLIanrGeia~r~~ra~r~~Gi~tv~v~s~ 34 (110)
T PF00289_consen 3 KKVLIANRGEIAVRIIRALRELGIETVAVNSN 34 (110)
T ss_dssp SEEEESS-HHHHHHHHHHHHHTTSEEEEEEEG
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCcceeccCc
Confidence 56799999999999999999999999988764
No 447
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=94.86 E-value=0.058 Score=37.63 Aligned_cols=32 Identities=25% Similarity=0.184 Sum_probs=29.0
Q ss_pred EEEEcC-chHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 18 TDVIGG-GNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 18 v~ViGg-G~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
|+|+|+ |.+|-.++..|.+.+.+|+.+.|++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~ 33 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPS 33 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGG
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCch
Confidence 489997 99999999999999999999999643
No 448
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=94.81 E-value=0.04 Score=45.37 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=30.4
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
++|.|||+|..|..+|..++..|.+|++++++++
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4569999999999999999999999999988643
No 449
>KOG1335|consensus
Probab=94.78 E-value=0.093 Score=41.84 Aligned_cols=35 Identities=23% Similarity=0.300 Sum_probs=31.3
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR 51 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~ 51 (148)
+++|||+|+-|.-+|...++.|.++..++.+..+.
T Consensus 41 DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LG 75 (506)
T KOG1335|consen 41 DVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLG 75 (506)
T ss_pred CEEEECCCCchHHHHHHHHHhcceeEEEeccCccC
Confidence 35999999999999999999999999999876653
No 450
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=94.76 E-value=0.13 Score=40.34 Aligned_cols=32 Identities=25% Similarity=0.236 Sum_probs=28.9
Q ss_pred eEEEEcCchHHHHHHHHHhhcC--------CeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIA--------KKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g--------~~Vtlv~~~~ 48 (148)
+|+|||+|..|..+|..|+..+ .+|+++.|.+
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~ 40 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEE 40 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEecc
Confidence 3599999999999999999988 9999998854
No 451
>PRK07512 L-aspartate oxidase; Provisional
Probab=94.74 E-value=0.039 Score=45.44 Aligned_cols=30 Identities=23% Similarity=0.399 Sum_probs=26.1
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|+|||+|..|+-+|..++ +.+|+|+++..
T Consensus 11 DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~ 40 (513)
T PRK07512 11 RPVIVGGGLAGLMAALKLA--PRPVVVLSPAP 40 (513)
T ss_pred CEEEECchHHHHHHHHHhC--cCCEEEEECCC
Confidence 4599999999999999987 56999999854
No 452
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=94.69 E-value=0.053 Score=46.68 Aligned_cols=35 Identities=17% Similarity=0.099 Sum_probs=31.2
Q ss_pred cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
+++|.|||+|..|..+|..++..|.+|++++..++
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~ 369 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA 369 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence 36679999999999999999999999999987643
No 453
>PLN02785 Protein HOTHEAD
Probab=94.63 E-value=0.052 Score=45.54 Aligned_cols=32 Identities=31% Similarity=0.304 Sum_probs=28.8
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
+++|||||..|+-+|..|++ ..+|.|+|++..
T Consensus 57 D~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 57 DYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred CEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 45999999999999999999 689999999763
No 454
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.63 E-value=0.063 Score=36.06 Aligned_cols=30 Identities=30% Similarity=0.362 Sum_probs=26.8
Q ss_pred eEEEEcCchHHHHHHHHHhhcCC-eEEEEEe
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAK-KVTLIHR 46 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~ 46 (148)
+|+|+|.|.+|.++|..|+..|. +++++..
T Consensus 4 ~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~ 34 (135)
T PF00899_consen 4 RVLIIGAGGVGSEVAKNLARSGVGKITLVDD 34 (135)
T ss_dssp EEEEESTSHHHHHHHHHHHHHTTSEEEEEES
T ss_pred EEEEECcCHHHHHHHHHHHHhCCCceeecCC
Confidence 34999999999999999999986 7888876
No 455
>PRK07846 mycothione reductase; Reviewed
Probab=94.62 E-value=0.054 Score=43.84 Aligned_cols=29 Identities=14% Similarity=0.146 Sum_probs=24.3
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+++|||+|+.|..+|.. ..|++|.+|++.
T Consensus 3 D~vVIG~G~~g~~aa~~--~~G~~V~lie~~ 31 (451)
T PRK07846 3 DLIIIGTGSGNSILDER--FADKRIAIVEKG 31 (451)
T ss_pred CEEEECCCHHHHHHHHH--HCCCeEEEEeCC
Confidence 45999999999987755 469999999973
No 456
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.60 E-value=0.14 Score=41.15 Aligned_cols=55 Identities=22% Similarity=0.165 Sum_probs=39.3
Q ss_pred cCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcC
Q psy5231 10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLK 74 (148)
Q Consensus 10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~ 74 (148)
.||++ +|+|+|-+|+.+|..|++.|.+|++..+.... .....+.+. ..|+++..+
T Consensus 4 ~~k~v----~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~--~~~~~~~l~----~~g~~~~~~ 58 (447)
T PRK02472 4 QNKKV----LVLGLAKSGYAAAKLLHKLGANVTVNDGKPFS--ENPEAQELL----EEGIKVICG 58 (447)
T ss_pred CCCEE----EEEeeCHHHHHHHHHHHHCCCEEEEEcCCCcc--chhHHHHHH----hcCCEEEeC
Confidence 46777 99999999999999999999999998754321 112223333 467777643
No 457
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=94.59 E-value=0.045 Score=43.45 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=32.5
Q ss_pred ccCCCCCeEEecccCccc----cchhHHHHHHHHHHHHHHHHhhC
Q psy5231 108 TSTNISGVFCRWRCTRLY----FIDKQLLALGSGCMAALDAQRYL 148 (148)
Q Consensus 108 ~~t~~~~vya~GD~~~~~----~~~~~~~A~~~G~~aA~~i~~~l 148 (148)
+...+||+|.+|.+.+.. ++ +..+|..+|+.|+.+++.+|
T Consensus 332 ~Sk~~pgLYf~GEvLDvdG~~GGY-NLq~AwsSG~~AG~~~~~~~ 375 (376)
T TIGR03862 332 MLKARPGVFCAGEMLDWEAPTGGY-LLTACFATGRAAGRGVHSWL 375 (376)
T ss_pred hcccCCCeEEEEEEEeeccCCCCH-HHHHHHHHHHHHHHHHHHhh
Confidence 544689999999775432 24 78999999999999999886
No 458
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=94.58 E-value=0.05 Score=36.97 Aligned_cols=32 Identities=19% Similarity=0.246 Sum_probs=27.6
Q ss_pred EEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
++|+|+|.++..++..+...|.+|++++.+++
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 48999999999999999999999999987654
No 459
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=94.56 E-value=0.064 Score=43.76 Aligned_cols=39 Identities=21% Similarity=0.198 Sum_probs=34.2
Q ss_pred hhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+....||++ +|+|.|.+|..+|..+..+|.+|+++++.+
T Consensus 249 ~~~LaGKtV----gVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp 287 (476)
T PTZ00075 249 DVMIAGKTV----VVCGYGDVGKGCAQALRGFGARVVVTEIDP 287 (476)
T ss_pred CCCcCCCEE----EEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 345678888 999999999999999999999999987753
No 460
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.54 E-value=0.054 Score=41.35 Aligned_cols=39 Identities=28% Similarity=0.270 Sum_probs=34.5
Q ss_pred hhhhhcCCcccceEEEEcCchH-HHHHHHHHhhcCCeEEEEEeC
Q psy5231 5 FGILALIKPVIIFTDVIGGGNT-AVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 5 ~g~~~~gk~v~~~v~ViGgG~~-g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+++...||++ +|||.|.+ |.-+|..|.+.+..||+.+..
T Consensus 152 ~~i~l~Gk~v----vViGrs~iVGkPla~lL~~~~atVt~~hs~ 191 (285)
T PRK14189 152 IGIPLRGAHA----VVIGRSNIVGKPMAMLLLQAGATVTICHSK 191 (285)
T ss_pred cCCCCCCCEE----EEECCCCccHHHHHHHHHHCCCEEEEecCC
Confidence 4567889999 99999988 999999999999999998754
No 461
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.53 E-value=0.041 Score=42.53 Aligned_cols=31 Identities=26% Similarity=0.355 Sum_probs=28.8
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+|+|+|||.+|.+.|......|.+||+++++
T Consensus 170 kv~iiGGGvvgtnaAkiA~glgA~Vtild~n 200 (371)
T COG0686 170 KVVVLGGGVVGTNAAKIAIGLGADVTILDLN 200 (371)
T ss_pred cEEEECCccccchHHHHHhccCCeeEEEecC
Confidence 3499999999999999999999999999986
No 462
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.51 E-value=0.063 Score=41.25 Aligned_cols=37 Identities=22% Similarity=-0.004 Sum_probs=33.8
Q ss_pred hhhhcCCcccceEEEEc-CchHHHHHHHHHhhcCCeEEEEEe
Q psy5231 6 GILALIKPVIIFTDVIG-GGNTAVEEALYLSNIAKKVTLIHR 46 (148)
Q Consensus 6 g~~~~gk~v~~~v~ViG-gG~~g~e~A~~l~~~g~~Vtlv~~ 46 (148)
+....||++ +||| ++..|.-+|..|.+.|..|++++.
T Consensus 153 ~i~~~Gk~V----~viGrs~~mG~PmA~~L~~~g~tVtv~~~ 190 (296)
T PRK14188 153 HGDLSGLNA----VVIGRSNLVGKPMAQLLLAANATVTIAHS 190 (296)
T ss_pred CCCCCCCEE----EEEcCCcchHHHHHHHHHhCCCEEEEECC
Confidence 557889999 9999 999999999999999999999963
No 463
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=94.51 E-value=0.076 Score=40.71 Aligned_cols=31 Identities=29% Similarity=0.359 Sum_probs=28.6
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+|.|||+|..|..+|..|++.|.+|+++.|.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARD 33 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 4599999999999999999999999999874
No 464
>KOG1336|consensus
Probab=94.50 E-value=0.086 Score=42.76 Aligned_cols=68 Identities=21% Similarity=0.215 Sum_probs=47.6
Q ss_pred ceEEEEcCchHHHHHHHHHhhcC--CeEEEEEeCCCCCch------------HHHHHHHHhHHhcCCcEEEcCceEEEEe
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIA--KKVTLIHRNEKLRCE------------KILIDRLMQKVNEGKIDIKLKHIVHKII 81 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~~~~------------~~~~~~l~~~l~~~~v~i~~~~~v~~i~ 81 (148)
++++|+|+|+.|.-++..+.+.| -+.+++.+...++.+ .....+..+-.++.+|++++++.+.++.
T Consensus 75 r~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~D 154 (478)
T KOG1336|consen 75 RHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVKAD 154 (478)
T ss_pred ceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceeeccccccccChhhHhhcCceEEEcceeEEee
Confidence 34599999999888888888875 467888865433221 1233334445567999999999998876
Q ss_pred cC
Q psy5231 82 GN 83 (148)
Q Consensus 82 ~~ 83 (148)
-.
T Consensus 155 ~~ 156 (478)
T KOG1336|consen 155 LA 156 (478)
T ss_pred cc
Confidence 43
No 465
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=94.50 E-value=0.066 Score=42.93 Aligned_cols=37 Identities=22% Similarity=0.147 Sum_probs=32.7
Q ss_pred hhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
...|++| +|+|.|.+|.-+|..+..+|.+|+++++.+
T Consensus 192 ~l~Gk~V----vViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 192 LIAGKTV----VVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CCCcCEE----EEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 4568888 999999999999999999999999987653
No 466
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=94.49 E-value=0.072 Score=38.53 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=29.4
Q ss_pred cCCcccceEEEEcCchHHHHHHHHHhhcCC-eEEEEEeC
Q psy5231 10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAK-KVTLIHRN 47 (148)
Q Consensus 10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~ 47 (148)
..++| +|+|.|-.|.++|..|++.|. +++++...
T Consensus 20 ~~~~V----~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATV----AICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcE----EEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 45566 999999999999999999998 69998764
No 467
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.49 E-value=0.078 Score=40.71 Aligned_cols=31 Identities=19% Similarity=0.211 Sum_probs=28.8
Q ss_pred EEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
|.|||.|..|.-+|..|++.|.+|+++.|+.
T Consensus 7 I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 7 IAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred EEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4999999999999999999999999998854
No 468
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.47 E-value=0.075 Score=41.11 Aligned_cols=30 Identities=23% Similarity=0.271 Sum_probs=28.3
Q ss_pred EEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
|.|||+|..|.-+|..|++.|.+|+++.|+
T Consensus 7 I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 7 VAVLGAGAWGTALAVLAASKGVPVRLWARR 36 (328)
T ss_pred EEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 499999999999999999999999999885
No 469
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=94.45 E-value=0.093 Score=32.48 Aligned_cols=35 Identities=34% Similarity=0.318 Sum_probs=30.0
Q ss_pred hhcCCcccceEEEEcCchHHHHHHHHHhhc-CCeEEEEEe
Q psy5231 8 LALIKPVIIFTDVIGGGNTAVEEALYLSNI-AKKVTLIHR 46 (148)
Q Consensus 8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~-g~~Vtlv~~ 46 (148)
...++++ +|+|.|..|.-++..|.+. +.+|+++.|
T Consensus 20 ~~~~~~v----~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 20 SLKGKTV----VVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCCEE----EEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 3556777 9999999999999999998 688888877
No 470
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=94.45 E-value=0.061 Score=43.51 Aligned_cols=29 Identities=14% Similarity=0.178 Sum_probs=24.1
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+++|||+|+.|..+|.. ..|++|.+|++.
T Consensus 4 D~vvIG~G~~g~~aa~~--~~g~~V~lie~~ 32 (452)
T TIGR03452 4 DLIIIGTGSGNSIPDPR--FADKRIAIVEKG 32 (452)
T ss_pred CEEEECCCHHHHHHHHH--HCCCeEEEEeCC
Confidence 45999999999888644 469999999973
No 471
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=94.43 E-value=0.038 Score=44.30 Aligned_cols=29 Identities=28% Similarity=0.378 Sum_probs=27.3
Q ss_pred EEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 20 ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
|||+|..|+-+|..+++.|.+|+|+|+.+
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~ 29 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAP 29 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 79999999999999999999999999864
No 472
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=94.43 E-value=0.066 Score=43.18 Aligned_cols=38 Identities=24% Similarity=0.216 Sum_probs=33.4
Q ss_pred hhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 7 ILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 7 ~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
....|+++ +|+|.|.+|..+|..+..+|.+|+++++.+
T Consensus 208 ~~l~Gk~V----lViG~G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 208 VLIAGKVV----VVAGYGDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred CCCCCCEE----EEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 34578888 999999999999999999999999988753
No 473
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.41 E-value=0.17 Score=40.61 Aligned_cols=31 Identities=26% Similarity=0.288 Sum_probs=28.6
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+++|+|+|.+|..+|..|.+.|.+|+++++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~ 32 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTD 32 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 4599999999999999999999999999874
No 474
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=94.39 E-value=0.068 Score=43.87 Aligned_cols=32 Identities=19% Similarity=0.122 Sum_probs=29.2
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|.|||+|..|..+|..|+..|.+|+++.+.+
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 45999999999999999999999999998753
No 475
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=94.37 E-value=0.058 Score=44.46 Aligned_cols=34 Identities=21% Similarity=0.189 Sum_probs=30.5
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
++|.|||+|..|..+|..++..|.+|+++++.++
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4569999999999999999999999999988643
No 476
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=94.36 E-value=0.061 Score=41.82 Aligned_cols=32 Identities=28% Similarity=0.309 Sum_probs=29.3
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
.+|+|+|+|..|-.+|..|++.|++|+++.|+
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~ 33 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRD 33 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecC
Confidence 35699999999999999999999999999874
No 477
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.36 E-value=0.18 Score=40.70 Aligned_cols=56 Identities=16% Similarity=0.086 Sum_probs=39.6
Q ss_pred cCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcCc
Q psy5231 10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKH 75 (148)
Q Consensus 10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~~ 75 (148)
.++++ +|+|.|-+|+.+|..|++.|.+|++.+..+.. ...+++.+. ..|+.++.+.
T Consensus 4 ~~~~~----~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~----~~~~~l~~~--~~gi~~~~g~ 59 (445)
T PRK04308 4 QNKKI----LVAGLGGTGISMIAYLRKNGAEVAAYDAELKP----ERVAQIGKM--FDGLVFYTGR 59 (445)
T ss_pred CCCEE----EEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc----hhHHHHhhc--cCCcEEEeCC
Confidence 45666 99999999999999999999999998765432 112233210 1478776554
No 478
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.30 E-value=0.089 Score=39.87 Aligned_cols=34 Identities=24% Similarity=0.197 Sum_probs=29.9
Q ss_pred cCCcccceEEEEcCchHHHHHHHHHhhcC-CeEEEEEeC
Q psy5231 10 LIKPVIIFTDVIGGGNTAVEEALYLSNIA-KKVTLIHRN 47 (148)
Q Consensus 10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~ 47 (148)
.+.+| +|+|.|-+|.++|..|++.| .+++|++..
T Consensus 29 ~~s~V----lVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 29 ADAHI----CVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred cCCCE----EEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 45566 99999999999999999998 789999864
No 479
>PLN02494 adenosylhomocysteinase
Probab=94.25 E-value=0.082 Score=43.14 Aligned_cols=38 Identities=13% Similarity=0.122 Sum_probs=33.3
Q ss_pred hhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 7 ILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 7 ~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
....|+++ +|+|.|.+|..+|..+..+|.+|+++++.+
T Consensus 250 i~LaGKtV----vViGyG~IGr~vA~~aka~Ga~VIV~e~dp 287 (477)
T PLN02494 250 VMIAGKVA----VICGYGDVGKGCAAAMKAAGARVIVTEIDP 287 (477)
T ss_pred CccCCCEE----EEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 34568888 999999999999999999999999988754
No 480
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=94.24 E-value=0.063 Score=45.16 Aligned_cols=31 Identities=35% Similarity=0.450 Sum_probs=28.7
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+|+|||+|.+|+++|..+++.|.+|+++++.
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~ 32 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLN 32 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEecc
Confidence 4699999999999999999999999999874
No 481
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.20 E-value=0.07 Score=42.84 Aligned_cols=32 Identities=25% Similarity=0.249 Sum_probs=29.1
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|.|||.|.+|.-+|..|++.|.+|+.+.+.+
T Consensus 5 kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred EEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 45999999999999999999999999998753
No 482
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.16 E-value=0.098 Score=41.40 Aligned_cols=30 Identities=27% Similarity=0.474 Sum_probs=27.9
Q ss_pred EEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
++|+|+|.+|..++..+..+|.+|+++.++
T Consensus 170 VlViGaG~vG~~aa~~a~~lGa~V~v~d~~ 199 (370)
T TIGR00518 170 VTIIGGGVVGTNAAKMANGLGATVTILDIN 199 (370)
T ss_pred EEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 499999999999999999999999999875
No 483
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=94.14 E-value=0.11 Score=38.85 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=29.9
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
+++|+|+|..+..+|..+...|.+|+++..++.
T Consensus 102 ~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 102 HVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred EEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 459999999999999999999999999986654
No 484
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=94.12 E-value=0.096 Score=40.17 Aligned_cols=37 Identities=27% Similarity=0.184 Sum_probs=32.5
Q ss_pred hhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
...++++ +|+|.|.+|..++..|..+|.+|+++.|+.
T Consensus 149 ~l~g~kv----lViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 149 TIHGSNV----LVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCCCCEE----EEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3457777 999999999999999999999999998863
No 485
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.11 E-value=0.2 Score=39.68 Aligned_cols=33 Identities=21% Similarity=0.240 Sum_probs=29.1
Q ss_pred EEEEcCchHHHHHHHHHhhcC-------CeEEEEEeCCCC
Q psy5231 18 TDVIGGGNTAVEEALYLSNIA-------KKVTLIHRNEKL 50 (148)
Q Consensus 18 v~ViGgG~~g~e~A~~l~~~g-------~~Vtlv~~~~~~ 50 (148)
|+|||+|..|..+|..|++.+ .+|+++.|++..
T Consensus 14 i~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~ 53 (365)
T PTZ00345 14 VSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIV 53 (365)
T ss_pred EEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccc
Confidence 499999999999999999887 799999887653
No 486
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=94.09 E-value=0.098 Score=40.39 Aligned_cols=34 Identities=21% Similarity=0.129 Sum_probs=30.0
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCC
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 49 (148)
+++.|||+|..|--+|..++.-|.+|+++..++.
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~ 37 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPE 37 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCCHH
Confidence 4569999999999999999997799999998643
No 487
>PRK00536 speE spermidine synthase; Provisional
Probab=94.09 E-value=0.09 Score=39.70 Aligned_cols=57 Identities=12% Similarity=0.076 Sum_probs=34.7
Q ss_pred cceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCC-chHHHHHHHHhHHhcCCcEEEc
Q psy5231 15 IIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR-CEKILIDRLMQKVNEGKIDIKL 73 (148)
Q Consensus 15 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~-~~~~~~~~l~~~l~~~~v~i~~ 73 (148)
||+|+|||||+-| ++.++.+.-.+|++++-.++.- ......-.+.+.+....++++.
T Consensus 73 pk~VLIiGGGDGg--~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~ 130 (262)
T PRK00536 73 LKEVLIVDGFDLE--LAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK 130 (262)
T ss_pred CCeEEEEcCCchH--HHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee
Confidence 5667999999966 4677777766999998654321 1111111222345567777764
No 488
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=94.08 E-value=0.097 Score=44.90 Aligned_cols=34 Identities=21% Similarity=0.172 Sum_probs=30.2
Q ss_pred cceEEEEcCchHHHHHHHHHh-hcCCeEEEEEeCC
Q psy5231 15 IIFTDVIGGGNTAVEEALYLS-NIAKKVTLIHRNE 48 (148)
Q Consensus 15 ~~~v~ViGgG~~g~e~A~~l~-~~g~~Vtlv~~~~ 48 (148)
+++|+|||+|..|..+|..++ ..|.+|++++.++
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 366799999999999999998 7799999998754
No 489
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=94.05 E-value=0.19 Score=41.78 Aligned_cols=49 Identities=18% Similarity=0.144 Sum_probs=37.5
Q ss_pred ceEEEEcCchHHHHHHHHHhhcCCeEEEEEeCCCCCchHHHHHHHHhHHhcCCcEEEcC
Q psy5231 16 IFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLK 74 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~~v~i~~~ 74 (148)
.+++|+|.|..|-..|..|.+.|.+|++++++ ++..++++ +.|.+.+.+
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d------~~~~~~~~----~~g~~~i~G 466 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETS------RTRVDELR----ERGIRAVLG 466 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECC------HHHHHHHH----HCCCeEEEc
Confidence 45599999999999999999999999999864 33445554 356665543
No 490
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=94.02 E-value=0.11 Score=44.60 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=29.7
Q ss_pred ceEEEEcCchHHHHHHHHHh-hcCCeEEEEEeCCC
Q psy5231 16 IFTDVIGGGNTAVEEALYLS-NIAKKVTLIHRNEK 49 (148)
Q Consensus 16 ~~v~ViGgG~~g~e~A~~l~-~~g~~Vtlv~~~~~ 49 (148)
++|+|||+|..|..+|..++ ..|.+|++++..++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~ 339 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQ 339 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 56799999999999999988 58999999987643
No 491
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=93.96 E-value=0.1 Score=39.52 Aligned_cols=37 Identities=22% Similarity=0.344 Sum_probs=32.1
Q ss_pred hhhcCCcccceEEEEcCchHHHHHHHHHhhcC-CeEEEEEeC
Q psy5231 7 ILALIKPVIIFTDVIGGGNTAVEEALYLSNIA-KKVTLIHRN 47 (148)
Q Consensus 7 ~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~ 47 (148)
+...++++ +|+|+|-+|-.++..|...| .+|+++.|+
T Consensus 119 ~~~~~k~v----lVlGaGg~a~ai~~aL~~~g~~~V~v~~R~ 156 (278)
T PRK00258 119 VDLKGKRI----LILGAGGAARAVILPLLDLGVAEITIVNRT 156 (278)
T ss_pred CCCCCCEE----EEEcCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 34566777 99999999999999999999 899999885
No 492
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=93.93 E-value=0.43 Score=32.50 Aligned_cols=32 Identities=19% Similarity=0.087 Sum_probs=24.3
Q ss_pred ceEEEEc-CchHHHHHHHHHhhcCC-eEEEEEeC
Q psy5231 16 IFTDVIG-GGNTAVEEALYLSNIAK-KVTLIHRN 47 (148)
Q Consensus 16 ~~v~ViG-gG~~g~e~A~~l~~~g~-~Vtlv~~~ 47 (148)
|.++|.| ++.+|.++|..|.+.|. .|.++.|+
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~ 34 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRS 34 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec
Confidence 3458888 56999999999999955 56666665
No 493
>KOG2853|consensus
Probab=93.85 E-value=0.077 Score=41.78 Aligned_cols=34 Identities=24% Similarity=0.488 Sum_probs=28.9
Q ss_pred eEEEEcCchHHHHHHHHHhhc----CCeEEEEEeCCCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNI----AKKVTLIHRNEKL 50 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~----g~~Vtlv~~~~~~ 50 (148)
.|+|||||.+|...|..|.++ |.+|.++||.+.+
T Consensus 88 dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty 125 (509)
T KOG2853|consen 88 DVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY 125 (509)
T ss_pred CEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence 369999999999999999765 6899999997643
No 494
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=93.84 E-value=0.13 Score=35.06 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=29.6
Q ss_pred hcCCcccceEEEEcCchHHHHHHHHHhhcC-CeEEEEEeC
Q psy5231 9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIA-KKVTLIHRN 47 (148)
Q Consensus 9 ~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~ 47 (148)
..++++ +|+|+|.+|...+..|.+.+ .+|+++.|+
T Consensus 17 ~~~~~i----~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~ 52 (155)
T cd01065 17 LKGKKV----LILGAGGAARAVAYALAELGAAKIVIVNRT 52 (155)
T ss_pred CCCCEE----EEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 455666 99999999999999999985 788888764
No 495
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=93.81 E-value=0.086 Score=42.16 Aligned_cols=32 Identities=25% Similarity=0.311 Sum_probs=29.0
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+|.|||.|.+|..+|..|++.|.+|+++.+.+
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~ 33 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQ 33 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCH
Confidence 35999999999999999999999999998753
No 496
>PRK04148 hypothetical protein; Provisional
Probab=93.78 E-value=0.063 Score=36.45 Aligned_cols=30 Identities=27% Similarity=0.160 Sum_probs=27.0
Q ss_pred EEEEcCchHHHHHHHHHhhcCCeEEEEEeCC
Q psy5231 18 TDVIGGGNTAVEEALYLSNIAKKVTLIHRNE 48 (148)
Q Consensus 18 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 48 (148)
+++||-| .|.+.|..|++.|.+|+.+..++
T Consensus 20 ileIG~G-fG~~vA~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 20 IVELGIG-FYFKVAKKLKESGFDVIVIDINE 49 (134)
T ss_pred EEEEEec-CCHHHHHHHHHCCCEEEEEECCH
Confidence 4999999 99999999999999999998653
No 497
>PRK13243 glyoxylate reductase; Reviewed
Probab=93.77 E-value=0.11 Score=40.53 Aligned_cols=38 Identities=18% Similarity=0.199 Sum_probs=33.7
Q ss_pred hhhhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 6 g~~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
|.+..||++ .|||-|.+|-.+|..|..+|.+|..+.+.
T Consensus 145 g~~L~gktv----gIiG~G~IG~~vA~~l~~~G~~V~~~d~~ 182 (333)
T PRK13243 145 GYDVYGKTI----GIIGFGRIGQAVARRAKGFGMRILYYSRT 182 (333)
T ss_pred ccCCCCCEE----EEECcCHHHHHHHHHHHHCCCEEEEECCC
Confidence 456678888 99999999999999999999999988764
No 498
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=93.75 E-value=0.12 Score=40.52 Aligned_cols=34 Identities=26% Similarity=0.310 Sum_probs=29.5
Q ss_pred cCCcccceEEEEcCchHHHHHHHHHhhcCC-eEEEEEeC
Q psy5231 10 LIKPVIIFTDVIGGGNTAVEEALYLSNIAK-KVTLIHRN 47 (148)
Q Consensus 10 ~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~ 47 (148)
.+++| +|||.|-.|.++|..|++.|. +++++.+.
T Consensus 23 ~~~~V----lIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 23 REKHV----LIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred cCCcE----EEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 34556 999999999999999999996 89999874
No 499
>PRK10637 cysG siroheme synthase; Provisional
Probab=93.73 E-value=0.094 Score=42.65 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=31.5
Q ss_pred hhcCCcccceEEEEcCchHHHHHHHHHhhcCCeEEEEEe
Q psy5231 8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHR 46 (148)
Q Consensus 8 ~~~gk~v~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~ 46 (148)
...|++| +|||||.+|..=+..|.+.|.+||++..
T Consensus 9 ~l~~~~v----lvvGgG~vA~rk~~~ll~~ga~v~visp 43 (457)
T PRK10637 9 QLRDRDC----LLVGGGDVAERKARLLLDAGARLTVNAL 43 (457)
T ss_pred EcCCCEE----EEECCCHHHHHHHHHHHHCCCEEEEEcC
Confidence 4578898 9999999999999999999999999964
No 500
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.72 E-value=0.27 Score=39.24 Aligned_cols=31 Identities=19% Similarity=0.320 Sum_probs=28.5
Q ss_pred eEEEEcCchHHHHHHHHHhhcCCeEEEEEeC
Q psy5231 17 FTDVIGGGNTAVEEALYLSNIAKKVTLIHRN 47 (148)
Q Consensus 17 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 47 (148)
+|.|+|.|++|+-.|.-|++.|++|+.+.-.
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid 32 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDID 32 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCC
Confidence 4599999999999999999999999999764
Done!