RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5231
(148 letters)
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A*
1f6m_A* 1tdf_A* 1tde_A*
Length = 320
Score = 163 bits (414), Expect = 1e-50
Identities = 67/174 (38%), Positives = 83/174 (47%), Gaps = 55/174 (31%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
VIGGGNTAVEEALYLSNIA +V LIHR + R EKILI RLM KV G I + + +
Sbjct: 150 VIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEE 209
Query: 80 IIGN----------NTVT--------------------------GQLEMNDGYIKTKLNK 103
+ G+ +T GQLE+ +GYIK +
Sbjct: 210 VTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGI 269
Query: 104 KTGYTSTNISGVFC-------RWR--CTRLYFIDKQLLALGSGCMAALDAQRYL 148
T T+I GVF +R T + G+GCMAALDA+RYL
Sbjct: 270 HGNATQTSIPGVFAAGDVMDHIYRQAIT----------SAGTGCMAALDAERYL 313
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct
structural genomics, PSI, protein structure initiative;
HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Length = 335
Score = 148 bits (376), Expect = 7e-45
Identities = 52/172 (30%), Positives = 78/172 (45%), Gaps = 59/172 (34%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
VIGGG++A+EEA +L+ A+ VTL+HR ++ R KI++DR N KI H V
Sbjct: 160 VIGGGDSAMEEATFLTRFARSVTLVHRRDEFRASKIMLDRAR---NNDKIRFLTNHTVVA 216
Query: 80 IIGNNTVTG----------------------------------QLEMND-GYIKTKLNKK 104
+ G+ TVTG ++++ GY+ +
Sbjct: 217 VDGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVREAIDVDPDGYVLV----Q 272
Query: 105 TGYTSTNISGVFC-------RWRCTRLYFIDKQ-LLALGSGCMAALDAQRYL 148
TST++ GVF +R Q + A GSGC AA+DA+R+L
Sbjct: 273 GRTTSTSLPGVFAAGDLVDRTYR---------QAVTAAGSGCAAAIDAERWL 315
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein,
oxidoreductase, redox- active center; HET: FAD; 1.90A
{Deinococcus radiodurans}
Length = 325
Score = 146 bits (370), Expect = 4e-44
Identities = 40/172 (23%), Positives = 63/172 (36%), Gaps = 60/172 (34%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
VIGGG+ AVEE ++L+ A +VT+IHR + LR K+ R K+ V +
Sbjct: 157 VIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRANKVAQARAF---ANPKMKFIWDTAVEE 213
Query: 80 IIGNNTVTG----------------------------------QLEMND-GYIKTKLNKK 104
I G ++V+G + + D GY+ +
Sbjct: 214 IQGADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDTVSLRDDGYVDVR---- 269
Query: 105 TGYTSTNISGVF----CRWRCTRLYFIDKQL----LALGSGCMAALDAQRYL 148
TNI +F D ++G+G AA+ +R L
Sbjct: 270 -DEIYTNIPMLFAAGDVS---------DYIYRQLATSVGAGTRAAMMTERQL 311
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP,
oxidoreductase, phosphoprotein, redox-A center; HET: FAD
CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Length = 338
Score = 146 bits (370), Expect = 6e-44
Identities = 50/182 (27%), Positives = 75/182 (41%), Gaps = 66/182 (36%)
Query: 12 KPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDI 71
KP+ VIGGG++A EEA +L+ KV ++ R + LR I+ R KI+I
Sbjct: 174 KPLA----VIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRASTIMQKRAE---KNEKIEI 226
Query: 72 KLKHIVHKIIGN----------NTVT-------------------------GQLEMND-G 95
+ + G+ NT GQ++ ++ G
Sbjct: 227 LYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAGQVDTDEAG 286
Query: 96 YIKTKLNKKTGYTSTNISGVFC-------RWR--CTRLYFIDKQLLALGSGCMAALDAQR 146
YIKT G + T++ G F ++R T + GSGCMAALDA++
Sbjct: 287 YIKT----VPGSSLTSVPGFFAAGDVQDSKYRQAIT----------SAGSGCMAALDAEK 332
Query: 147 YL 148
YL
Sbjct: 333 YL 334
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein,
redox-active center, oxidoreductase, D oxidoreductase;
HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5
c.3.1.5 PDB: 2whd_A*
Length = 333
Score = 143 bits (363), Expect = 5e-43
Identities = 55/183 (30%), Positives = 80/183 (43%), Gaps = 66/183 (36%)
Query: 12 KPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDI 71
KP+ VIGGG++A+EEA +L+ KV +IHR + R KI+ R + + KID+
Sbjct: 160 KPLA----VIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQQRAL---SNPKIDV 212
Query: 72 KLKHIVHKIIGN------------NTVT-------------------------GQLEMND 94
V + G+ N VT G +E++
Sbjct: 213 IWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLDGGVELDS 272
Query: 95 -GYIKTKLNKKTGYTSTNISGVFC-------RWRCTRLYFIDKQ-LLALGSGCMAALDAQ 145
GY+ T K G T T++ GVF ++R Q + A G+GCMAALDA+
Sbjct: 273 DGYVVT----KPGTTQTSVPGVFAAGDVQDKKYR---------QAITAAGTGCMAALDAE 319
Query: 146 RYL 148
YL
Sbjct: 320 HYL 322
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+
B reduced izoalloxazine bending, oxidoreductase; HET:
FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A*
3ish_A*
Length = 311
Score = 138 bits (350), Expect = 4e-41
Identities = 47/178 (26%), Positives = 65/178 (36%), Gaps = 66/178 (37%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
V+GGG+TAVEEA+YL+NI KKV LIHR + RC I ++ N KI+ ++V +
Sbjct: 148 VLGGGDTAVEEAIYLANICKKVYLIHRRDGFRCAPITLEHAK---NNDKIEFLTPYVVEE 204
Query: 80 IIGN----------NTVTGQ------------------------------LEMND-GYIK 98
I G+ NT T + + ++ G I
Sbjct: 205 IKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIV 264
Query: 99 TKLNKKTGYTSTNISGVF----CRWRCTRLYFIDKQL----LALGSGCMAALDAQRYL 148
TN+ G+F R A G AAL YL
Sbjct: 265 VD-----FSMKTNVQGLFAAGDIR---------IFAPKQVVCAASDGATAALSVISYL 308
>3r9u_A Thioredoxin reductase; structural genomics, center for structural
genomics of infec diseases, csgid, thioredoxin-disulfide
reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Length = 315
Score = 138 bits (349), Expect = 6e-41
Identities = 39/177 (22%), Positives = 64/177 (36%), Gaps = 65/177 (36%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
V+GGG+TA+EEALYL+NI K+ LIHR ++ R ++++ + KI++ V +
Sbjct: 152 VLGGGDTALEEALYLANICSKIYLIHRRDEFRAAPSTVEKVKKN---EKIELITSASVDE 208
Query: 80 IIGN---------NTVTGQ------------------------------LEMND-GYIKT 99
+ G+ G M + G +
Sbjct: 209 VYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSV 268
Query: 100 KLNKKTGYTSTNISGVF----CRWRCTRLYFIDKQL----LALGSGCMAALDAQRYL 148
T+++G+F R A G G +AAL A Y+
Sbjct: 269 D-----LKMQTSVAGLFAAGDLR---------KDAPKQVICAAGDGAVAALSAMAYI 311
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding,
FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Length = 323
Score = 134 bits (340), Expect = 2e-39
Identities = 40/175 (22%), Positives = 65/175 (37%), Gaps = 63/175 (36%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
VIGGG++A+E A LS+ + KV LIHR + + + I ++ + + ++ L +V +
Sbjct: 159 VIGGGDSALEGAEILSSYSTKVYLIHRRDTFKAQPIYVETVKK--KP-NVEFVLNSVVKE 215
Query: 80 IIGNNTVTG-----------------------------------QLEMND-GYIKTKLNK 103
I G+ V +E + GYIK
Sbjct: 216 IKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVD--- 272
Query: 104 KTGYTSTNISGVF----CRWRCTRLYFIDKQLL------ALGSGCMAALDAQRYL 148
+ T++ GVF C L A+ G +AA A RY+
Sbjct: 273 --EWMRTSVPGVFAAGDCT---------SAWLGFRQVITAVAQGAVAATSAYRYV 316
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD,
disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Length = 310
Score = 127 bits (321), Expect = 7e-37
Identities = 45/170 (26%), Positives = 69/170 (40%), Gaps = 55/170 (32%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
VIGGGN+ VE A+ L+ I + VTL+ +++ +++L D+L + +DI L +
Sbjct: 149 VIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKLRS--LK-NVDIILNAQTTE 205
Query: 80 IIGN----------NTVTG-------------------------QLEMND-GYIKTKLNK 103
+ G+ + V+G +E N G I
Sbjct: 206 VKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGAVERNRMGEIIID--- 262
Query: 104 KTGYTSTNISGVF----CRWRCTRLYFIDKQLL-ALGSGCMAALDAQRYL 148
TN+ GVF C T Y KQ++ A G G A+L A YL
Sbjct: 263 --AKCETNVKGVFAAGDCT---TVPY---KQIIIATGEGAKASLSAFDYL 304
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein;
HET: FAD; 2.35A {Thermoplasma acidophilum}
Length = 319
Score = 118 bits (298), Expect = 2e-33
Identities = 34/171 (19%), Positives = 59/171 (34%), Gaps = 57/171 (33%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
IGGGN+ A+ +S K VT+I K CE + + + I + V +
Sbjct: 160 TIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMCENAYVQEI----KKRNIPYIMNAQVTE 215
Query: 80 IIGN----------NTVTGQ--------------------------LEMND-GYIKTKLN 102
I+G+ + TG+ +++++ GYI
Sbjct: 216 IVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSGVKLDERGYIVVD-- 273
Query: 103 KKTGYTSTNISGVF----CRWRCTRLYFIDKQLL-ALGSGCMAALDAQRYL 148
T++ GV+ + + Q+ A+G GC AAL
Sbjct: 274 ---SRQRTSVPGVYAAGDVT---SGNF---AQIASAVGDGCKAALSLYSDS 315
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 120 bits (302), Expect = 7e-33
Identities = 44/170 (25%), Positives = 69/170 (40%), Gaps = 55/170 (32%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
VIGGGN+ VE A+ L+ I + VTL+ +++ +++L D++ + +DI L +
Sbjct: 360 VIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKVRS--LK-NVDIILNAQTTE 416
Query: 80 IIGN----------NTVTG-------------------------QLEMND-GYIKTKLNK 103
+ G+ + V+G LE N G I
Sbjct: 417 VKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGALERNRMGEIIID--- 473
Query: 104 KTGYTSTNISGVF----CRWRCTRLYFIDKQLL-ALGSGCMAALDAQRYL 148
T++ GVF C T Y KQ++ A G G A+L A YL
Sbjct: 474 --AKCETSVKGVFAAGDCT---TVPY---KQIIIATGEGAKASLSAFDYL 515
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
genomics, NPPSFA, project on protein structural and
functional analyses; HET: FAD; 2.10A {Thermus
thermophilus}
Length = 335
Score = 84.2 bits (209), Expect = 2e-20
Identities = 31/140 (22%), Positives = 56/140 (40%), Gaps = 44/140 (31%)
Query: 12 KPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDI 71
K V+I GGG++AV+ AL L + A+++TLIHR + R + + LM+ EG++++
Sbjct: 153 KRVLIV----GGGDSAVDWALNLLDTARRITLIHRRPQFRAHEASVKELMKAHEEGRLEV 208
Query: 72 KLKHIVHKIIGNNTVTG-----------------------------------QLEMNDGY 96
+ + ++ G+ V L +
Sbjct: 209 LTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANWGLALEKNK 268
Query: 97 IKTKLNKKTGYTSTNISGVF 116
IK +T+I GV+
Sbjct: 269 IKVDTT-----MATSIPGVY 283
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH,
flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus
subtilis} PDB: 3lzx_A*
Length = 332
Score = 81.9 bits (203), Expect = 1e-19
Identities = 31/140 (22%), Positives = 52/140 (37%), Gaps = 48/140 (34%)
Query: 12 KPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDI 71
+ V I GGG++AV+ AL L IAK+V++IHR +K R + ++ L K+++
Sbjct: 155 RRVAIL----GGGDSAVDWALMLEPIAKEVSIIHRRDKFRAHEHSVENLH----ASKVNV 206
Query: 72 KLKHIVHKIIGNNTVTG-----------------------------------QLEMNDGY 96
+ ++IG + + L++
Sbjct: 207 LTPFVPAELIGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGPIKNWGLDIEKNS 266
Query: 97 IKTKLNKKTGYTSTNISGVF 116
I K TNI G F
Sbjct: 267 IVVKST-----METNIEGFF 281
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport,
FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum
tepidum}
Length = 360
Score = 75.8 bits (187), Expect = 3e-17
Identities = 23/132 (17%), Positives = 47/132 (35%), Gaps = 40/132 (30%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
++GGG++A++ + L A VTL+HR + + + + G ID+ L+ V
Sbjct: 168 IVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGHGKTAHEVERARANGTIDVYLETEVAS 227
Query: 80 IIGNN---------TVTGQ--------------------------LEMNDGYIKTKLNKK 104
I +N + G LE+ + + +
Sbjct: 228 IEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLELYENALVVDSH-- 285
Query: 105 TGYTSTNISGVF 116
T++ G++
Sbjct: 286 ---MKTSVDGLY 294
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics; HET:
FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 71.4 bits (176), Expect = 7e-16
Identities = 25/161 (15%), Positives = 44/161 (27%), Gaps = 47/161 (29%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
VI A+ AL L + + + + ++ + + + + +
Sbjct: 146 VIAASPMAIHHALMLPDWGETTFFTNGIVEPDADQH------ALLAARGVRV-ETTRIRE 198
Query: 80 IIGNNTVT-----------------------------GQLEMND--GYIKTKLNKKTGYT 108
I G+ V +E I T K+
Sbjct: 199 IAGHADVVLADGRSIALAGLFTQPKLRITVDWIEKLGCAVEEGPMGSTIVTDPMKQ---- 254
Query: 109 STNISGVFCRWRCTRLYFIDKQL-LALGSGCMAALDAQRYL 148
T G+F R + LA+G G MA A R +
Sbjct: 255 -TTARGIFACGDVARPA---GSVALAVGDGAMAGAAAHRSI 291
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved
protein, rossmann fold, structural genomics, NPPSFA;
HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Length = 180
Score = 59.9 bits (146), Expect = 3e-12
Identities = 8/41 (19%), Positives = 10/41 (24%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRL 60
G V +S +H LR E L
Sbjct: 140 AAGVARGKVPGHAIISAGDGAYVAVHLVSDLRGEPYKDHAL 180
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 61.0 bits (149), Expect = 4e-12
Identities = 15/167 (8%), Positives = 40/167 (23%), Gaps = 56/167 (33%)
Query: 20 VIGGGNT-AVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVH 78
+I + + N + + + +L +M +++ I + + +
Sbjct: 151 IISENEDHTLHMTKLVYNWSTDLVIATNGNELS------QTIMDELSNKNIPV-ITESIR 203
Query: 79 KIIGNNT-VTG------------------------------QLEMND-GYIKTKLNKKTG 106
+ G + E+ G +
Sbjct: 204 TLQGEGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQLGCELQSNGTFVIDDFGR-- 261
Query: 107 YTSTNISGVF----CRWRCTRLYFIDKQL-LALGSGCMAALDAQRYL 148
T+ ++ T+ L +A G AA+ +
Sbjct: 262 ---TSEKNIYLAGETT---TQGP---SSLIIAASQGNKAAIAINSDI 299
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 40.6 bits (95), Expect = 7e-05
Identities = 24/152 (15%), Positives = 38/152 (25%), Gaps = 42/152 (27%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKI---------LIDRLMQKVNEGKID 70
VIGG + + A L+ + L L RL + +G
Sbjct: 171 VIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARI 230
Query: 71 IKLKHIVHKIIGNNTVTGQLEMNDGYIKTKLNK---KTGYT------------------- 108
H K I N + + G ++ TG+
Sbjct: 231 EMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPIVQQLFVTTNQDIK 290
Query: 109 ------STNISGVF-----CRWRCTRLYFIDK 129
ST +F +L +I K
Sbjct: 291 LTTHDESTRYPNIFMIGATVENDNAKLCYIYK 322
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 36.2 bits (84), Expect = 0.002
Identities = 16/102 (15%), Positives = 33/102 (32%), Gaps = 5/102 (4%)
Query: 12 KPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDR--LMQKVNEGKI 69
K V+I A A L+ +VT++ ++ +M++++E +
Sbjct: 529 KRVVIL--NADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHFTLEYPNMMRRLHELHV 586
Query: 70 DIKLKHIVHKIIGNNTVTGQLEMNDGYIKTKLNKKTGYTSTN 111
+ H + I + DG +T N
Sbjct: 587 EELGDHFCSR-IEPGRMEIYNIWGDGSKRTYRGPGVSPRDAN 627
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.003
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 20 VIGGGNTAVEEAL-YLSNI-AKKVTLIHRNEKLRCEKI 55
V G A++ L+ I +K+ +I + L E++
Sbjct: 1854 VAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 35.0 bits (81), Expect = 0.005
Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC-EKILIDRLMQKVNEGKIDIKLKHIVH 78
VIG A+E A +L+++ VT++ R+ LR ++ + +++ + + +
Sbjct: 291 VIGASYVALECAGFLASLGGDVTVMVRSILLRGFDQQMAEKVGDYMENHGVKFAKLCVPD 350
Query: 79 KIIGNNTVTGQLEMNDGYIKTKLNKKTGYTST 110
+I V G + K + G
Sbjct: 351 EIK-QLKVVDTENNKPGLLLVKGHYTDGKKFE 381
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 34.5 bits (80), Expect = 0.008
Identities = 16/94 (17%), Positives = 36/94 (38%), Gaps = 8/94 (8%)
Query: 6 GILALIKP--VIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK-LRCE-KILIDRLM 61
+ + + ++G G AVE + + + R + LR + +I+ L
Sbjct: 169 EFFNIKESKKIG----IVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLE 224
Query: 62 QKVNEGKIDIKLKHIVHKIIGNNTVTGQLEMNDG 95
+ + I+I V +I + + ++DG
Sbjct: 225 NDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDG 258
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura
genomics, protein structure initiative; HET: FAD NDP;
2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5
PDB: 2gvc_A* 1vqw_A*
Length = 447
Score = 34.2 bits (78), Expect = 0.009
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRN 47
V+GG ++A + +L+ +AK
Sbjct: 217 VVGGASSANDLVRHLTPVAKHPIYQSLL 244
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 34.1 bits (79), Expect = 0.010
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC-EKILIDRLMQKVNEGKIDIKLKHIVH 78
V+G A+E A +L+ I T++ R+ LR ++ + + + + +
Sbjct: 190 VVGASYVALECAGFLTGIGLDTTVMMRSIPLRGFDQQMSSLVTEHMESHGTQFLKGCVPS 249
Query: 79 KIIGNNTVTGQLEMNDG 95
I T Q+ D
Sbjct: 250 HIKKLPTNQLQVTWEDH 266
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD;
2.72A {Stenotrophomonas maltophilia}
Length = 357
Score = 32.7 bits (75), Expect = 0.026
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHR 46
+IGGGN+ + +S +A+ +
Sbjct: 168 IIGGGNSGAQILAEVSTVAETTWITQH 194
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase,
rubredoxin reductas NAD, flavoprotein, oxidoreductase;
HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Length = 384
Score = 32.5 bits (75), Expect = 0.031
Identities = 14/83 (16%), Positives = 32/83 (38%), Gaps = 12/83 (14%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKL--RCEKILID----RLMQKVNEGK-IDIK 72
++G G E A LS+ ++ ++ E++ L+ + +Q EG +
Sbjct: 150 LLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPG----LLHPAAAKAVQAGLEGLGVRFH 205
Query: 73 LKHIVHKIIGNNTVTGQLEMNDG 95
L ++ + ++DG
Sbjct: 206 LGPVLASLKKAGEGLE-AHLSDG 227
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 32.5 bits (75), Expect = 0.039
Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEK-LRC-EKILIDRLMQKVNEGKIDIKLKHIV 77
V+G G VE ++ + K L + L + ++ + L++ +N + I
Sbjct: 172 VVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIP 231
Query: 78 HKIIGNNTVTGQLEMNDG 95
++ N + LE+ DG
Sbjct: 232 KAVVKNTDGSLTLELEDG 249
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 32.1 bits (74), Expect = 0.052
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEK-LRC-EKILIDRLMQKVNEGKIDIKLKHIV 77
++GGG VE A + K TL+HR + LR + L L + I I + V
Sbjct: 196 IVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMVAKGISIIYEATV 255
Query: 78 HKI 80
++
Sbjct: 256 SQV 258
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 31.3 bits (72), Expect = 0.088
Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 11/88 (12%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEK-LRC-EKILIDRLMQKVNEGKIDIKLKHIV 77
+IG G +E A L + +VT++ ++ L + +L L + ++ I+ L+ V
Sbjct: 171 IIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQFDPLLSATLAENMHAQGIETHLEFAV 230
Query: 78 HKIIGNNTVTGQLEMNDGYIKTKLNKKT 105
+ + G +
Sbjct: 231 AALERD---------AQGTTLVAQDGTR 249
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 31.5 bits (72), Expect = 0.088
Identities = 9/72 (12%), Positives = 27/72 (37%), Gaps = 5/72 (6%)
Query: 12 KPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKIL---IDRLMQKVNEGK 68
K V+++ A L+ +V+++ ++ ++R+ +++ E
Sbjct: 524 KKVVVY--DDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENG 581
Query: 69 IDIKLKHIVHKI 80
+ H V +
Sbjct: 582 VARVTDHAVVAV 593
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 31.3 bits (72), Expect = 0.093
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
Query: 20 VIGGGNTAVE--EALYLSNIAKKVTLIHRNEKLRCEKILID----RLMQKVNEGKIDIKL 73
+IGGG +E EA + K VT+I R E R + D ++++ + ++++L
Sbjct: 153 IIGGGYIGIEMAEAF--AAQGKNVTMIVRGE--RVLRRSFDKEVTDILEEKLKKHVNLRL 208
Query: 74 KHIVHKIIGNNTVTG 88
+ I KI G V
Sbjct: 209 QEITMKIEGEERVEK 223
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent
N-hydroxylating monooxygenase, CLAS flavin dependent
monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A
{Pseudomonas aeruginosa} PDB: 3s61_A*
Length = 463
Score = 31.2 bits (70), Expect = 0.12
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 20 VIGGGNTAVEEALYLSNI--AKKVTLIHRNEKLR 51
+IGGG +A E + L++ + + +I R L+
Sbjct: 232 IIGGGQSAAEAFIDLNDSYPSVQADMILRASALK 265
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 31.0 bits (71), Expect = 0.14
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 20 VIGGGNTAVE--EALYLSNIAKKVTLIHRNEKL---RCEKILIDRLMQKVNEGKIDIKLK 74
V+G G VE EA K+V LI + ++ L D + + + E I +
Sbjct: 199 VVGAGYIGVELAEAF--QRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFG 256
Query: 75 HIVHKIIGNNTVTG 88
V ++ GN V
Sbjct: 257 ETVKEVAGNGKVEK 270
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 30.5 bits (70), Expect = 0.15
Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 11/93 (11%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEK-LRC-EKILIDRLMQKVNEGKIDIKLKHIV 77
++G G AVE A LS + K +L+ R++K LR + ++ +++ +++ V
Sbjct: 192 IVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQV 251
Query: 78 HKIIGNNTVTGQLEMNDGYIKTKLNKKTGYTST 110
++ G + + G
Sbjct: 252 KEVKKT---------LSGLEVSMVTAVPGRLPV 275
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 30.5 bits (70), Expect = 0.15
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 20 VIGGGNTAVE--EALYLSNIAKKVTLIHRNEKL---RCEKILIDRLMQKVNEGKIDIKLK 74
VIG G +E EA + KKVT+I ++ +K D L +++ I I
Sbjct: 154 VIGSGYIGIEAAEAFAKAG--KKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATG 211
Query: 75 HIVHKIIGNNTVTG 88
V + G+ V
Sbjct: 212 ETVERYEGDGRVQK 225
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for
structural genomics, secsg, hyperthermoph protein
structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus
furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 367
Score = 30.6 bits (70), Expect = 0.15
Identities = 15/80 (18%), Positives = 24/80 (30%), Gaps = 21/80 (26%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQ-----------KVNEGK 68
+IGGG +E A L+ V LIHR + + E
Sbjct: 148 IIGGGFIGLELAGNLAEAGYHVKLIHRG----------AMFLGLDEELSNMIKDMLEETG 197
Query: 69 IDIKLKHIVHKIIGNNTVTG 88
+ L + + +T
Sbjct: 198 VKFFLNSELLEANEEGVLTN 217
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 30.5 bits (70), Expect = 0.16
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEK-LRC-EKILIDRLMQKVNEGKIDIKLKHIV 77
+ GGG AVE A + K TLI+R ++ L ++ + L + E I I + I+
Sbjct: 175 IAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIRILCEDII 234
Query: 78 HKI 80
+
Sbjct: 235 QSV 237
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 30.6 bits (70), Expect = 0.17
Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEK-LRC-EKILIDRLMQKVNEGKIDIKLKHIV 77
V+G G +E A + + L+ R E LR ++ + + + + I++ +
Sbjct: 190 VVGAGYIGIELAGVFHGLGSETHLVIRGETVLRKFDECIQNTITDHYVKEGINVHKLSKI 249
Query: 78 HKI 80
K+
Sbjct: 250 VKV 252
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus
stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Length = 413
Score = 30.5 bits (68), Expect = 0.17
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 8 LALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49
L L+ P I + GG +TA++ N K +I +
Sbjct: 49 LNLLVPSINQEHMFGGISTALKLFEQFDNKKFKKRIILTDAT 90
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 30.2 bits (69), Expect = 0.21
Identities = 13/77 (16%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC-EKILIDRLMQKVNEGKIDIKLKHIVH 78
V+G G +E A +L + + T++ R+ LR ++ + + + + E I K +
Sbjct: 192 VVGAGYIGLECAGFLKGLGYEPTVMVRSIVLRGFDQQMAELVAASMEERGIPFLRKTVPL 251
Query: 79 KIIGNNTVTGQLEMNDG 95
+ + ++ +
Sbjct: 252 SVEKQDDGKLLVKYKNV 268
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 29.8 bits (68), Expect = 0.31
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 20 VIGGGNTAVE--EALYLSNIAKKVTLIHRNEKL--RCEKILIDRLMQKVNEGKIDIKLKH 75
+IGGG +E E + KKV +I RN+ + + + + + ++ ++ I+I
Sbjct: 191 IIGGGAIGLEMAETF--VELGKKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEILTNE 248
Query: 76 IVHKIIGNNTVTG 88
V GN V
Sbjct: 249 NVKAFKGNERVEA 261
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 29.5 bits (67), Expect = 0.38
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Query: 20 VIGGGNTAVE--EALYLSNIAKKVTLIHRNEKL--RCEKILIDRLMQKVNEGKIDIKLKH 75
VIGGG VE E L +VTL+ ++ + + + + + +++ +
Sbjct: 192 VIGGGFIGVEMVENLRERG--IEVTLVEMANQVMPPIDYEMAAYVHEHMKNHDVELVFED 249
Query: 76 IVHKIIGNNTVT 87
V + N V
Sbjct: 250 GVDALEENGAVV 261
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A
{Staphylococcus aureus}
Length = 438
Score = 29.4 bits (67), Expect = 0.48
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 20 VIGGGNTAVE--EALYLSNIAKKVTLIHRNEKL--RCEKILIDRLMQKVNEGKIDIKLKH 75
V+G G ++E E LY TLIHR++K+ + + ++ ++++ +I +L
Sbjct: 153 VVGAGYVSLEVLENLYERG--LHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNE 210
Query: 76 IVHKIIGNNTVT 87
++ I GN
Sbjct: 211 EINAINGNEITF 222
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 28.4 bits (64), Expect = 0.80
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTL 43
+IG G + A+YLS + +
Sbjct: 499 IIGCGGIGFDTAMYLSQPGESTSQ 522
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 28.5 bits (64), Expect = 0.81
Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 3/51 (5%)
Query: 56 LIDRLMQKVNEGKIDIKLKHIVHKII--GNNTVTG-QLEMNDGYIKTKLNK 103
+ L + DI+L V +I+ + VTG ++
Sbjct: 257 VAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKAD 307
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 28.5 bits (64), Expect = 0.92
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 56 LIDRLMQKVNEGKIDIKLKHIVHKII--GNNTVTG-QLEMNDGYIKTKLNK 103
+ID L + E ID +L V K++ +++V G + K
Sbjct: 252 IIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAK 302
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A
{Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A*
2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A*
2xls_A* 2xlr_A*
Length = 464
Score = 28.0 bits (62), Expect = 1.2
Identities = 14/108 (12%), Positives = 27/108 (25%), Gaps = 12/108 (11%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
++G +A + K + R + + +
Sbjct: 202 LVGSSYSAEDIGSQCYKYGAKKLISCY----RTAPMGYKWPENWDERPNLVRVDTENAYF 257
Query: 80 IIGNNTVTGQLEMNDGYIKTK--LNKKTGYTSTNISGVFCRWRCTRLY 125
G++ + + GYI LN + N R LY
Sbjct: 258 ADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNN------RLWPLNLY 299
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating
complex, structural GEN PSI-2-2, protein structure
initiative; HET: AMP; 3.45A {Thermotoga maritima}
Length = 218
Score = 27.9 bits (63), Expect = 1.2
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 14 VIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKI 55
VII IGG TA A + + V +I+++ + CE+
Sbjct: 3 VII----IGGETTAYYLARSMLSRKYGVVIINKDRE-LCEEF 39
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain);
FAD-binding protein, GR-fold, oxidoreductase; HET: FAD;
2.10A {Clostridium acetobutylicum}
Length = 385
Score = 28.0 bits (63), Expect = 1.3
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50
+IGGG +E A + + ++ E
Sbjct: 151 IIGGGILGIELAQAIIDSGTPASIGIILEYP 181
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 27.5 bits (61), Expect = 2.1
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
Query: 20 VIGGGNTA---VEEALYLSNIAKKVTLIHR 46
V+G G+TA AL A++V L+ R
Sbjct: 337 VLGAGDTAFDCATSALRCG--ARRVFLVFR 364
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 27.3 bits (61), Expect = 2.2
Identities = 6/53 (11%), Positives = 17/53 (32%), Gaps = 3/53 (5%)
Query: 56 LIDRLMQKVNEGKIDIKLKHIVHKII--GNNTVTG-QLEMNDGYIKTKLNKKT 105
++ L + ID+++ +++ TV G ++
Sbjct: 257 VVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAV 309
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 27.1 bits (61), Expect = 2.5
Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 7/70 (10%)
Query: 20 VIGGGNTAVE--EALYLSNIAKKVTLIHRNEKL---RCEKILIDRLMQKVNEGKIDIKLK 74
+IG G E EA N V LI +E++ +K D L + +++ L
Sbjct: 154 IIGSGYIGAELAEAYSNQN--YNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLG 211
Query: 75 HIVHKIIGNN 84
V +
Sbjct: 212 SKVAAFEEVD 221
>2yy3_A Elongation factor 1-beta; structural genomics, NPPSFA, national
Pro protein structural and functional analyses; 2.50A
{Pyrococcus horikoshii}
Length = 91
Score = 25.5 bits (56), Expect = 3.4
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 5 FGILALIKPVIIFTDVIGGGNTAVEEAL 32
FG++AL K ++ D G V E
Sbjct: 48 FGLVAL-KFYVLGRDEEGYSFDEVAEKF 74
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 26.8 bits (60), Expect = 3.6
Identities = 13/85 (15%), Positives = 35/85 (41%), Gaps = 6/85 (7%)
Query: 20 VIGGGNTAVE--EALYLSNIAKKVTLIHRNEKL--RCEKILIDRLMQKVNEGKIDIKLKH 75
V+GGG +E E+L ++ K TL+ +++ ++ + Q + + +D++L
Sbjct: 156 VVGGGFIGLEMMESL--HHLGIKTTLLELADQVMTPVDREMAGFAHQAIRDQGVDLRLGT 213
Query: 76 IVHKIIGNNTVTGQLEMNDGYIKTK 100
+ ++ + +
Sbjct: 214 ALSEVSYQVQTHVASDAAGEDTAHQ 238
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 26.5 bits (59), Expect = 4.3
Identities = 5/51 (9%), Positives = 17/51 (33%), Gaps = 3/51 (5%)
Query: 56 LIDRLMQKVNEGKIDIKLKHIVHKII--GNNTVTG-QLEMNDGYIKTKLNK 103
L+ L++ + + + V ++ V G + + + +
Sbjct: 204 LMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARR 254
>1tdh_A NEI endonuclease VIII-like 1; helix two turns helix, zinc-LESS
finger, hydrolase; 2.10A {Homo sapiens} SCOP: a.156.1.2
b.113.1.1 g.39.1.8
Length = 364
Score = 25.7 bits (56), Expect = 7.8
Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 10/79 (12%)
Query: 11 IKPVIIFTD---VIGGGNTAVEEALYLSNI-----AKKVTLIHRNEKLRCEKILIDRLMQ 62
I ++ D G GN E LY I A+ V + + E L ++
Sbjct: 161 ICEALL--DQRFFNGIGNYLRAEILYRLKIPPFEKARSVLEALQQHRPSPELTLSQKIRT 218
Query: 63 KVNEGKIDIKLKHIVHKII 81
K+ + + +++
Sbjct: 219 KLQNPDLLELCHSVPKEVV 237
>2yzv_A ADP-ribosylglycohydrolase; all alpha protein, structural genomics,
NPPSFA, N project on protein structural and functional
analyses; 1.60A {Thermus thermophilus} PDB: 2cwc_A
2yzw_A
Length = 303
Score = 25.3 bits (56), Expect = 9.1
Identities = 6/31 (19%), Positives = 8/31 (25%)
Query: 116 FCRWRCTRLYFIDKQLLALGSGCMAALDAQR 146
+ RW LG AL+
Sbjct: 83 YLRWYREGYRSATGVCFGLGHATRRALERYA 113
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
TRMFO; tRNA methyltransferase FAD folate, FAD,
flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus
thermophilus} PDB: 3g5q_A* 3g5r_A*
Length = 443
Score = 25.5 bits (56), Expect = 9.8
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 4/34 (11%)
Query: 11 IKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLI 44
++ V V+G G E A L + V L
Sbjct: 1 MERVN----VVGAGLAGSEAAWTLLRLGVPVRLF 30
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.140 0.409
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,318,187
Number of extensions: 130290
Number of successful extensions: 325
Number of sequences better than 10.0: 1
Number of HSP's gapped: 302
Number of HSP's successfully gapped: 74
Length of query: 148
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 63
Effective length of database: 4,328,508
Effective search space: 272696004
Effective search space used: 272696004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.0 bits)