RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5231
(148 letters)
>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase
{Escherichia coli [TaxId: 562]}
Length = 190
Score = 63.3 bits (153), Expect = 7e-14
Identities = 35/180 (19%), Positives = 57/180 (31%), Gaps = 53/180 (29%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHR------------------------------NEK 49
++G G A+Y + + LI
Sbjct: 10 ILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMH 69
Query: 50 LRCEKILIDRLMQKVNEGKIDIKLKHIVH--------------------KIIGNNTVTGQ 89
K + + +N+ + + + GQ
Sbjct: 70 EHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYHSPNTAIFEGQ 129
Query: 90 LEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLL-ALGSGCMAALDAQRYL 148
LE+ +GYIK + T T+I GVF + +Q + + G+GCMAALDA+RYL
Sbjct: 130 LELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIY--RQAITSAGTGCMAALDAERYL 187
>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli
[TaxId: 562]}
Length = 126
Score = 60.1 bits (145), Expect = 4e-13
Identities = 41/98 (41%), Positives = 59/98 (60%), Gaps = 8/98 (8%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
VIGGGNTAVEEALYLSNIA +V LIHR + R EKILI RLM KV G I + + +
Sbjct: 32 VIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEE 91
Query: 80 IIGNNTVTGQLEMNDGYIKTKLNKKTGYTST-NISGVF 116
+ G+ +M ++ + + + + +++G+F
Sbjct: 92 VTGD-------QMGVTGVRLRDTQNSDNIESLDVAGLF 122
>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase
{Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 192
Score = 49.9 bits (118), Expect = 7e-09
Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 8/107 (7%)
Query: 44 IHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHKIIGNNTVTGQLEMND-GYIKTKLN 102
+ + + L + + I + G +E++ GY+ TK
Sbjct: 89 VTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKGHEPATKFLDGGVELDSDGYVVTK-- 146
Query: 103 KKTGYTSTNISGVFCRWRCTRLYFIDKQ-LLALGSGCMAALDAQRYL 148
G T T++ GVF + +Q + A G+GCMAALDA+ YL
Sbjct: 147 --PGTTQTSVPGVFAAGDVQDKKY--RQAITAAGTGCMAALDAEHYL 189
Score = 24.9 bits (53), Expect = 3.7
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 18 TDVIGGGNTAVEEALYLSNI 37
T G A++ YL I
Sbjct: 173 TAAGTGCMAALDAEHYLQEI 192
>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase
subunit F (AhpF), C-terminal domains {Escherichia coli
[TaxId: 562]}
Length = 184
Score = 45.5 bits (106), Expect = 2e-07
Identities = 23/174 (13%), Positives = 41/174 (23%), Gaps = 46/174 (26%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEK------------LRCEKILIDRLMQKVNEG 67
++G G A+Y + + L+ + K +L +
Sbjct: 6 IVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVH 65
Query: 68 KIDIKLKHIVHKIIGNNTVTGQLEMNDGYIKTKLNKKT---------------------- 105
+ + I +
Sbjct: 66 VDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEGAV 125
Query: 106 -----------GYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
TN+ GVF CT + + ++A G G A+L A YL
Sbjct: 126 ERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYKQI-IIATGEGAKASLSAFDYL 178
Score = 27.4 bits (59), Expect = 0.58
Identities = 3/16 (18%), Positives = 5/16 (31%)
Query: 20 VIGGGNTAVEEALYLS 35
G ++ YL
Sbjct: 164 TGEGAKASLSAFDYLI 179
>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase
SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}
Length = 107
Score = 42.3 bits (99), Expect = 1e-06
Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRL--MQKVNEGKIDIKLK 74
V+GG ++A + +L+ +AK + + ++ + K + +I LK
Sbjct: 37 VVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQNESLQQVPEITKFDPTTREIYLK 93
>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase,
middle domain {Methylophilus methylotrophus, w3a1
[TaxId: 17]}
Length = 233
Score = 40.6 bits (93), Expect = 2e-05
Identities = 3/32 (9%), Positives = 11/32 (34%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR 51
+ T A + ++ + ++ E +
Sbjct: 185 IADATFTGHRVAREIEEANPQIAIPYKRETIA 216
>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium
falciparum [TaxId: 5833]}
Length = 117
Score = 37.0 bits (85), Expect = 1e-04
Identities = 15/92 (16%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Query: 6 GILALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEK--LRCEKILIDRLMQK 63
+ + I ++G G AVE + + + R + + ++ +I+ L
Sbjct: 15 EFFNIKESKKIG--IVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLEND 72
Query: 64 VNEGKIDIKLKHIVHKIIGNNTVTGQLEMNDG 95
+ + I+I V +I + + ++DG
Sbjct: 73 MKKNNINIVTFADVVEIKKVSDKNLSIHLSDG 104
>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 122
Score = 35.4 bits (81), Expect = 6e-04
Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKL-RCEKILIDRLMQKVNEGKIDIKLKHIVH 78
V+G A+E A +L+ I VT++ R+ L ++ + +++ + + E I + +
Sbjct: 25 VVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPT 84
Query: 79 KIIGNN 84
KI
Sbjct: 85 KIEQIE 90
>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F
(AhpF), C-terminal domains {Escherichia coli [TaxId:
562]}
Length = 126
Score = 35.2 bits (80), Expect = 8e-04
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 12/98 (12%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
VIGGGN+ VE A+ L+ I + VTL+ +++ +++L D+L N +DI L +
Sbjct: 35 VIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKLRSLKN---VDIILNAQTTE 91
Query: 80 IIGNNTVTGQLEMNDGYIKTKLNKKTGYTST-NISGVF 116
+ G+ + LE ++ +G ++G+F
Sbjct: 92 VKGDGSKVVGLEYR--------DRVSGDIHNIELAGIF 121
>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase
{Pseudomonas putida [TaxId: 303]}
Length = 185
Score = 35.5 bits (80), Expect = 0.001
Identities = 13/120 (10%), Positives = 23/120 (19%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
++G G VE A L + + + L + L
Sbjct: 8 IVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPD 67
Query: 80 IIGNNTVTGQLEMNDGYIKTKLNKKTGYTSTNISGVFCRWRCTRLYFIDKQLLALGSGCM 139
+ I + + I LA +G
Sbjct: 68 AYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNCELASAAGLQ 127
>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin
reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}
Length = 183
Score = 34.3 bits (77), Expect = 0.003
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 9 ALIKPVIIFTDVIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC 52
AL PV++ +G G +V L + + ++
Sbjct: 1 ALKAPVVV----LGAGLASVSFVAELRQAGYQGLITVVGDEAER 40
>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine
dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId:
9823]}
Length = 196
Score = 34.0 bits (76), Expect = 0.003
Identities = 6/34 (17%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 20 VIGGGNTAVEEALYLSNI-AKKVTLIHRNEKLRC 52
++G G ++ A +L+ + +T+ + E +
Sbjct: 9 LLGAGPASISCASFLARLGYSDITIFEKQEYVGG 42
>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus
faecalis [TaxId: 1351]}
Length = 198
Score = 33.3 bits (74), Expect = 0.006
Identities = 8/92 (8%), Positives = 26/92 (28%), Gaps = 17/92 (18%)
Query: 20 VIGGGNTAVEEALYLSNIAK--KVTLIHRNE---------------KLRCEKILIDRLMQ 62
V+G + E L N+ ++ + + K++ + +
Sbjct: 5 VLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGE 64
Query: 63 KVNEGKIDIKLKHIVHKIIGNNTVTGQLEMND 94
K+ +++ + I ++
Sbjct: 65 KMESRGVNVFSNTEITAIQPKEHQVTVKDLVS 96
>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase,
domain 3 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 153
Score = 31.7 bits (71), Expect = 0.018
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 20 VIGGGNTAVEEALY-LSNIAKKVTLIHR 46
V+G G+TA + A L A++V L+ R
Sbjct: 50 VLGAGDTAFDCATSALRCGARRVFLVFR 77
>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl
coenzyme M oxidoreductase/carboxylase {Xanthobacter
sp., py2 [TaxId: 35809]}
Length = 261
Score = 31.5 bits (70), Expect = 0.028
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC 52
IGGG + YL + + ++ R L
Sbjct: 47 FIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGG 79
>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli
[TaxId: 562]}
Length = 116
Score = 30.5 bits (68), Expect = 0.028
Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEK--LRCEKILIDRLMQKVNEGKIDIKLKHIV 77
V+G G VE ++ + K L + + ++ + L++ +N + I
Sbjct: 26 VVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIP 85
Query: 78 HKIIGNNTVTGQLEMNDG 95
++ N + LE+ DG
Sbjct: 86 KAVVKNTDGSLTLELEDG 103
>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide
dehydrogenase {Bacillus stearothermophilus [TaxId:
1422]}
Length = 223
Score = 30.2 bits (67), Expect = 0.061
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNE 48
V+G G A+ + + +KVT++ +
Sbjct: 8 VVGAGPGGYVAAIRAAQLGQKVTIVEKGN 36
>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase
{Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Length = 373
Score = 30.2 bits (66), Expect = 0.075
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 110 TNISGVFCRWRCTRLYFIDKQLLALGSGCMAALDAQRYL 148
N+ G+F + K AL SGC AA YL
Sbjct: 334 KNLPGLFYAGNHRGGLSVGK---ALSSGCNAADLVISYL 369
>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide
dehydrogenase {Neisseria meningitidis [TaxId: 487]}
Length = 229
Score = 30.3 bits (67), Expect = 0.075
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50
V+GGG A ++ KV ++ R + L
Sbjct: 11 VLGGGPGGYSAAFAAADEGLKVAIVERYKTL 41
>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide
dehydrogenase {Garden pea (Pisum sativum) [TaxId:
3888]}
Length = 221
Score = 29.0 bits (64), Expect = 0.18
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50
+IGGG A+ + + K T I + L
Sbjct: 8 IIGGGPGGYVAAIKAAQLGFKTTCIEKRGAL 38
>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase,
BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}
Length = 121
Score = 27.8 bits (61), Expect = 0.28
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 3/71 (4%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKL---RCEKILIDRLMQKVNEGKIDIKLKHI 76
++GGG +E A V+L+ +L L D + + +D++ +
Sbjct: 35 IVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERS 94
Query: 77 VHKIIGNNTVT 87
V + +
Sbjct: 95 VTGSVDGVVLL 105
>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide
dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId:
9913]}
Length = 336
Score = 28.3 bits (61), Expect = 0.34
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50
V+G G T + +S KKV + RN
Sbjct: 11 VLGTGLTECILSGIMSVNGKKVLHMDRNPYY 41
>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus
thermophilus [TaxId: 274]}
Length = 230
Score = 28.1 bits (62), Expect = 0.36
Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 9/65 (13%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVHK 79
++G G + E A +L+ +V L+ ++ +D +M K ++ +
Sbjct: 7 IVGAGFSGAETAFWLAQKGVRVGLLTQS---------LDAVMMPFLPPKPPFPPGSLLER 57
Query: 80 IIGNN 84
Sbjct: 58 AYDPK 62
>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 221
Score = 27.9 bits (61), Expect = 0.41
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRN 47
VIGGG+ + A + + + ++ +
Sbjct: 8 VIGGGSGGLASARRAAELGARAAVVESH 35
>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide
dehydrogenase {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 233
Score = 27.5 bits (60), Expect = 0.61
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50
+IGGG A+ + + + + KL
Sbjct: 10 IIGGGPAGYVAAIKAAQLGFNTACVEKRGKL 40
>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO
{Bacillus sp. [TaxId: 1409]}
Length = 276
Score = 27.4 bits (59), Expect = 0.62
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNE 48
VIGGG A YL+ K L
Sbjct: 9 VIGGGIIGSAIAYYLAKENKNTALFESGT 37
>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella
succinogenes [TaxId: 844]}
Length = 336
Score = 27.4 bits (59), Expect = 0.62
Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 2/40 (5%)
Query: 15 IIFTDV--IGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC 52
+ + D IGGG + A+ ++ R
Sbjct: 3 VQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRS 42
>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite
reductase {Pyrococcus furiosus [TaxId: 2261]}
Length = 167
Score = 27.0 bits (58), Expect = 0.70
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGKIDIKLKHIVH 78
++G G E A LS +VT+I + K ++ + +
Sbjct: 5 IVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWY 62
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation
inhibitor, GDI {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 297
Score = 27.5 bits (59), Expect = 0.75
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKL--RCEKILIDRLMQKVNEGKIDIKLKHIV 77
V+G G T + LS KKV I + + + + +L +K + I + +
Sbjct: 10 VLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESK 69
Query: 78 HKI 80
Sbjct: 70 FGK 72
>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide
dehydrogenase {Azotobacter vinelandii [TaxId: 354]}
Length = 229
Score = 26.9 bits (58), Expect = 0.84
Identities = 9/49 (18%), Positives = 16/49 (32%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRCEKILIDRLMQKVNEGK 68
VIG G A+ + + K LI + + + L +
Sbjct: 8 VIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPS 56
>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide
dehydrogenase {Pseudomonas putida [TaxId: 303]}
Length = 220
Score = 26.9 bits (58), Expect = 0.94
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNE 48
+IGGG A+ + L+
Sbjct: 10 IIGGGPGGYVAAIRAGQLGIPTVLVEGQA 38
>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human
(Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 27.0 bits (58), Expect = 0.97
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50
V+GGG + + A L + V ++ +++
Sbjct: 4 VVGGGISGMAAAKLLHDSGLNVVVLEARDRV 34
>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase,
C-terminal domain {Methylophilus methylotrophus, w3a1
[TaxId: 17]}
Length = 156
Score = 26.4 bits (57), Expect = 1.0
Identities = 9/70 (12%), Positives = 22/70 (31%), Gaps = 2/70 (2%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKL--RCEKILIDRLMQKVNEGKIDIKLKHIV 77
A A L+ +VT++ + +M++++E ++ H
Sbjct: 46 NADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHFTLEYPNMMRRLHELHVEELGDHFC 105
Query: 78 HKIIGNNTVT 87
+I
Sbjct: 106 SRIEPGRMEI 115
>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus
sp., strain b0618 [TaxId: 1409]}
Length = 281
Score = 27.0 bits (58), Expect = 1.1
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLRC 52
V+G G+ + L+ K L+ +
Sbjct: 8 VVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHT 40
>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase
{Escherichia coli [TaxId: 562]}
Length = 217
Score = 26.4 bits (57), Expect = 1.1
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNE 48
IGGG+ + + +K LI E
Sbjct: 7 AIGGGSGGIASINRAAMYGQKCALIEAKE 35
>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
putrefaciens [TaxId: 24]}
Length = 322
Score = 26.9 bits (58), Expect = 1.2
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 18 TDV--IGGGNTAVEEALYLSNIAKKVTLIHRNEKLR 51
TDV IG G + A+ + KV L+ +
Sbjct: 24 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPG 59
>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus
cereus [TaxId: 1396]}
Length = 251
Score = 26.5 bits (57), Expect = 1.2
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR 51
VIGGG + + A+ + V L+ + KL
Sbjct: 7 VIGGGPSGLMAAIGAAEEGANVLLLDKGNKLG 38
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan
pit viper (Calloselasma rhodostoma) [TaxId: 8717]}
Length = 370
Score = 26.6 bits (57), Expect = 1.4
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50
++G G + A L+ +VT++ +E+
Sbjct: 35 IVGAGMAGLSAAYVLAGAGHQVTVLEASERP 65
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase
{Myxococcus xanthus [TaxId: 34]}
Length = 347
Score = 26.6 bits (57), Expect = 1.4
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50
V+GGG + + A +L + L+ + +L
Sbjct: 5 VVGGGISGLAVAHHLRSRGTDAVLLESSARL 35
>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
frigidimarina [TaxId: 56812]}
Length = 308
Score = 26.5 bits (57), Expect = 1.4
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKLR 51
V+G G A+ ++ KV LI + +
Sbjct: 21 VVGSGGAGFSAAISATDSGAKVILIEKEPVIG 52
>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional
dehydrogenase/ferrochelatase Met8p, N-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 150
Score = 25.9 bits (56), Expect = 1.5
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIH 45
+IGGG + L K+TL+
Sbjct: 18 LIGGGEVGLTRLYKLMPTGCKLTLVS 43
>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
frigidimarina [TaxId: 56812]}
Length = 317
Score = 26.5 bits (57), Expect = 1.6
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 18 TDV--IGGGNTAVEEALYLSNIAKKVTLIHRNEKLR 51
T V +G G+ +L V L+ +
Sbjct: 20 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSG 55
>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden
pea (Pisum sativum) [TaxId: 3888]}
Length = 123
Score = 25.6 bits (55), Expect = 1.6
Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKL--RCEKILIDRLMQKVNEGKIDIKLKHIV 77
VIG G +E I +VT++ ++ + + + + + + + KLK V
Sbjct: 30 VIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKV 89
Query: 78 HKIIGN-NTVTGQLEMNDGYIKTKL 101
+ + + V +E + G +T +
Sbjct: 90 VGVDTSGDGVKLTVEPSAGGEQTII 114
>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A
subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 356
Score = 25.7 bits (55), Expect = 2.3
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 11 IKPVIIFTDV--IGGGN----TAVEEALYLSNIAKKVTLIHRNEKLRC 52
+ ++ TD+ IGGG A E A + KVTL+ + R
Sbjct: 15 VPTEVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERS 62
>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase
{Plasmodium falciparum [TaxId: 5833]}
Length = 259
Score = 25.8 bits (55), Expect = 2.6
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNE 48
VIGGG+ + A + KV L+ ++
Sbjct: 6 VIGGGSGGMAAARRAARHNAKVALVEKSR 34
>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase
{Trypanosome (Leishmania mexicana) [TaxId: 5665]}
Length = 189
Score = 25.2 bits (54), Expect = 3.0
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 20 VIGGGN--TAVEEALYLSNIAKKVTLIHRNEKLRCE 53
V G G TA+ A+ LS ++V + H NE+
Sbjct: 12 VFGSGAFGTAL--AMVLSKKCREVCVWHMNEEEVRL 45
>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933
{Haemophilus influenzae [TaxId: 727]}
Length = 253
Score = 25.2 bits (54), Expect = 3.5
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEKL 50
+IG G + A L+ + K VT+ +K+
Sbjct: 9 IIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI 39
>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin
reductase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 235
Score = 24.7 bits (52), Expect = 5.7
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEK 49
+IGGG+ + A + KKV ++
Sbjct: 8 IIGGGSGGLAAAKEAAKFDKKVMVLDFVTP 37
>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme
M oxidoreductase/carboxylase {Xanthobacter sp., py2
[TaxId: 35809]}
Length = 121
Score = 23.4 bits (49), Expect = 9.0
Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 20 VIGGGNTAVEEALYLSNIAKKVTLIHRNEK--LRCEKILIDRLMQKVNEGKIDIKLKHIV 77
V+GG TAVE + + ++ ++ R E L + ++ ++ E ++I V
Sbjct: 27 VVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNV 86
Query: 78 HKIIGNN 84
+I +
Sbjct: 87 TRIEEDA 93
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.140 0.409
Gapped
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 567,506
Number of extensions: 24943
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 57
Length of query: 148
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 71
Effective length of database: 1,350,386
Effective search space: 95877406
Effective search space used: 95877406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)