BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5233
(178 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q962S4|RL39_SPOFR 60S ribosomal protein L39 OS=Spodoptera frugiperda GN=RpL39 PE=3
SV=1
Length = 51
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/50 (94%), Positives = 48/50 (96%)
Query: 129 SAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLKL 178
SAHKTF IK KLAKKLKQNRPIPQW+RMRTGNTIRYNAKRRHWRRTKLKL
Sbjct: 2 SAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 51
>sp|Q6F482|RL39_PLUXY 60S ribosomal protein L39 OS=Plutella xylostella GN=RpL39 PE=3 SV=1
Length = 51
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/50 (94%), Positives = 48/50 (96%)
Query: 129 SAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLKL 178
SAHKTF IK KLAKKLKQNRPIPQW+RMRTGNTIRYNAKRRHWRRTKLKL
Sbjct: 2 SAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 51
>sp|P62893|RL39_RAT 60S ribosomal protein L39 OS=Rattus norvegicus GN=Rpl39 PE=1 SV=2
Length = 51
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/50 (84%), Positives = 45/50 (90%)
Query: 129 SAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLKL 178
S+HKTFRIK LAKK KQNRPIPQWIRM+TGN IRYN+KRRHWRRTKL L
Sbjct: 2 SSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51
>sp|P62892|RL39_MOUSE 60S ribosomal protein L39 OS=Mus musculus GN=Rpl39 PE=2 SV=2
Length = 51
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/50 (84%), Positives = 45/50 (90%)
Query: 129 SAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLKL 178
S+HKTFRIK LAKK KQNRPIPQWIRM+TGN IRYN+KRRHWRRTKL L
Sbjct: 2 SSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51
>sp|P62891|RL39_HUMAN 60S ribosomal protein L39 OS=Homo sapiens GN=RPL39 PE=2 SV=2
Length = 51
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/50 (84%), Positives = 45/50 (90%)
Query: 129 SAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLKL 178
S+HKTFRIK LAKK KQNRPIPQWIRM+TGN IRYN+KRRHWRRTKL L
Sbjct: 2 SSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51
>sp|Q3T051|RL39_BOVIN 60S ribosomal protein L39 OS=Bos taurus GN=RPL39 PE=3 SV=3
Length = 51
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/50 (84%), Positives = 45/50 (90%)
Query: 129 SAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLKL 178
S+HKTFRIK LAKK KQNRPIPQWIRM+TGN IRYN+KRRHWRRTKL L
Sbjct: 2 SSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51
>sp|P51425|RL39_MAIZE 60S ribosomal protein L39 OS=Zea mays GN=RPL39 PE=3 SV=1
Length = 51
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/47 (87%), Positives = 44/47 (93%)
Query: 130 AHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKL 176
+HKTFRIK KLAKK++QNRPIP WIRMRT NTIRYNAKRRHWRRTKL
Sbjct: 3 SHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 49
>sp|P51426|RL392_ORYSJ 60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica
GN=RPL39B PE=3 SV=2
Length = 51
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/47 (87%), Positives = 44/47 (93%)
Query: 130 AHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKL 176
+HKTFRIK KLAKK++QNRPIP WIRMRT NTIRYNAKRRHWRRTKL
Sbjct: 3 SHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 49
>sp|Q6KAJ8|RL391_ORYSJ 60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica
GN=RPL39A PE=3 SV=2
Length = 51
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/47 (87%), Positives = 44/47 (93%)
Query: 130 AHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKL 176
+HKTFRIK KLAKK++QNRPIP WIRMRT NTIRYNAKRRHWRRTKL
Sbjct: 3 SHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 49
>sp|Q90YS9|RL39_ICTPU 60S ribosomal protein L39 OS=Ictalurus punctatus GN=rpl39 PE=3 SV=1
Length = 51
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/50 (82%), Positives = 45/50 (90%)
Query: 129 SAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLKL 178
++HKTFRIK LAKK KQNRPIPQWIRM+TGN IRYN+KRRHWRRTKL L
Sbjct: 2 ASHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51
>sp|Q98TF5|RL39_CHICK 60S ribosomal protein L39 OS=Gallus gallus GN=RPL39 PE=2 SV=1
Length = 51
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/50 (82%), Positives = 45/50 (90%)
Query: 129 SAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLKL 178
S+HKTF+IK LAKK KQNRPIPQWIRM+TGN IRYN+KRRHWRRTKL L
Sbjct: 2 SSHKTFKIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51
>sp|Q59GN2|R39L5_HUMAN Putative 60S ribosomal protein L39-like 5 OS=Homo sapiens
GN=RPL39P5 PE=5 SV=2
Length = 51
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/50 (80%), Positives = 45/50 (90%)
Query: 129 SAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLKL 178
S+HKTF+IK LAKK KQNRPIPQWIRM+TGN IRYN+KRRHW+RTKL L
Sbjct: 2 SSHKTFKIKQFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWKRTKLGL 51
>sp|Q5SMI4|RL393_ORYSJ 60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica
GN=RPL39C PE=3 SV=1
Length = 51
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/47 (85%), Positives = 44/47 (93%)
Query: 130 AHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKL 176
+HKTF+IK KLAKK++QNRPIP WIRMRT NTIRYNAKRRHWRRTKL
Sbjct: 3 SHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 49
>sp|Q6BHV8|RL39_DEBHA 60S ribosomal protein L39 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=RPL39 PE=3 SV=1
Length = 51
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/49 (75%), Positives = 43/49 (87%)
Query: 130 AHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLKL 178
+ K+FR K KLAK KQNRP+PQWIR+R+GNTIRYNAKRRHWRRTKL +
Sbjct: 3 SQKSFRTKQKLAKAQKQNRPLPQWIRLRSGNTIRYNAKRRHWRRTKLNI 51
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 86 AHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTISVLYHCKSRH 128
+ K+FR K KLAK KQNRP+PQWIR+R+GNTI Y+ K RH
Sbjct: 3 SQKSFRTKQKLAKAQKQNRPLPQWIRLRSGNTIR--YNAKRRH 43
>sp|P05767|RL39_SCHPO 60S ribosomal protein L39 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl39 PE=3 SV=3
Length = 51
Score = 80.1 bits (196), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 36/49 (73%), Positives = 42/49 (85%)
Query: 130 AHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLKL 178
+HK+FR K KLAK +QNRPIPQWIR+RTGNT+ YN KRRHWRRTKL +
Sbjct: 3 SHKSFRTKQKLAKAARQNRPIPQWIRLRTGNTVHYNMKRRHWRRTKLNI 51
>sp|P51424|RL391_ARATH 60S ribosomal protein L39-1 OS=Arabidopsis thaliana GN=RPL39A PE=3
SV=2
Length = 51
Score = 79.7 bits (195), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 37/47 (78%), Positives = 42/47 (89%)
Query: 130 AHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKL 176
+HK+F IK KL KK++QNRPIP WIR+RT NTIRYNAKRRHWRRTKL
Sbjct: 3 SHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKL 49
>sp|P52814|RL39_CAEEL 60S ribosomal protein L39 OS=Caenorhabditis elegans GN=rpl-39 PE=3
SV=1
Length = 51
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/50 (78%), Positives = 44/50 (88%)
Query: 129 SAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLKL 178
SA K IK KLAKK KQNRP+PQW+RM+TGNT++YNAKRRHWRRTKLKL
Sbjct: 2 SALKKSFIKRKLAKKQKQNRPMPQWVRMKTGNTMKYNAKRRHWRRTKLKL 51
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 33/44 (75%), Gaps = 2/44 (4%)
Query: 85 SAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTISVLYHCKSRH 128
SA K IK KLAKK KQNRP+PQW+RM+TGNT+ Y+ K RH
Sbjct: 2 SALKKSFIKRKLAKKQKQNRPMPQWVRMKTGNTMK--YNAKRRH 43
>sp|Q96EH5|RL39L_HUMAN 60S ribosomal protein L39-like OS=Homo sapiens GN=RPL39L PE=1 SV=3
Length = 51
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/50 (76%), Positives = 43/50 (86%)
Query: 129 SAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLKL 178
S+HKTF IK LAKK KQNRPIPQWI+M+ G+ IRYN+KRRHWRRTKL L
Sbjct: 2 SSHKTFTIKRFLAKKQKQNRPIPQWIQMKPGSKIRYNSKRRHWRRTKLGL 51
>sp|Q8L8W6|RL392_ARATH 60S ribosomal protein L39-2 OS=Arabidopsis thaliana GN=RPL39B PE=3
SV=1
Length = 51
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/47 (76%), Positives = 41/47 (87%)
Query: 130 AHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKL 176
+HK+F IK KL KK++QNRPIP WIR+RT N IRYNAKRRHWRRTKL
Sbjct: 3 SHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKL 49
>sp|Q96W55|RL39_CANAX 60S ribosomal protein L39 OS=Candida albicans GN=RPL39 PE=3 SV=1
Length = 51
Score = 76.6 bits (187), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 36/49 (73%), Positives = 41/49 (83%)
Query: 130 AHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLKL 178
+ K+FR K KLAK KQNRP+PQWIR+RT N IRYNAKRRHWRRTKL +
Sbjct: 3 SQKSFRTKQKLAKAQKQNRPLPQWIRLRTDNKIRYNAKRRHWRRTKLGI 51
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 86 AHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTISVLYHCKSRH 128
+ K+FR K KLAK KQNRP+PQWIR+RT N I Y+ K RH
Sbjct: 3 SQKSFRTKQKLAKAQKQNRPLPQWIRLRTDNKIR--YNAKRRH 43
>sp|O16130|RL39_DROME 60S ribosomal protein L39 OS=Drosophila melanogaster GN=RpL39 PE=3
SV=2
Length = 51
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/50 (86%), Positives = 48/50 (96%)
Query: 129 SAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLKL 178
+AHK+FRIK KLAKKLKQNR +PQW+R+RTGNTIRYNAKRRHWRRTKLKL
Sbjct: 2 AAHKSFRIKQKLAKKLKQNRSVPQWVRLRTGNTIRYNAKRRHWRRTKLKL 51
>sp|Q758D8|RL39_ASHGO 60S ribosomal protein L39 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPL39 PE=3 SV=3
Length = 51
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/50 (68%), Positives = 42/50 (84%)
Query: 129 SAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLKL 178
+A K+F+IK KLAK QNRP+PQW R++T NTIRYNAKRRHWRRTK+ +
Sbjct: 2 AAKKSFKIKQKLAKAKNQNRPLPQWFRLKTNNTIRYNAKRRHWRRTKMGI 51
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 85 SAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTISVLYHCKSRH 128
+A K+F+IK KLAK QNRP+PQW R++T NTI Y+ K RH
Sbjct: 2 AAKKSFKIKQKLAKAKNQNRPLPQWFRLKTNNTIR--YNAKRRH 43
>sp|P48536|RL39_KLUMA 60S ribosomal protein L39 OS=Kluyveromyces marxianus GN=RPL39 PE=3
SV=2
Length = 51
Score = 73.6 bits (179), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/48 (72%), Positives = 40/48 (83%)
Query: 129 SAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKL 176
+A K+F IK KLAK QNRP+PQW R++T NTIRYNAKRRHWRRTKL
Sbjct: 2 AAKKSFIIKQKLAKAKNQNRPLPQWFRLKTNNTIRYNAKRRHWRRTKL 49
>sp|Q6CW22|RL39_KLULA 60S ribosomal protein L39 OS=Kluyveromyces lactis (strain ATCC 8585
/ CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=RPL39 PE=3 SV=3
Length = 51
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/50 (70%), Positives = 40/50 (80%)
Query: 129 SAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLKL 178
+A K+F IK KLAK QNRP+PQW R++T N IRYNAKRRHWRRTKL L
Sbjct: 2 AAKKSFIIKQKLAKAKNQNRPLPQWYRLKTNNKIRYNAKRRHWRRTKLGL 51
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 85 SAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTISVLYHCKSRH 128
+A K+F IK KLAK QNRP+PQW R++T N I Y+ K RH
Sbjct: 2 AAKKSFIIKQKLAKAKNQNRPLPQWYRLKTNNKIR--YNAKRRH 43
>sp|P04650|RL39_YEAST 60S ribosomal protein L39 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPL39 PE=1 SV=3
Length = 51
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/50 (72%), Positives = 44/50 (88%)
Query: 129 SAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLKL 178
+A K+FRIK K+AK KQNRP+PQWIR+RT NTIRYNAKRR+WRRTK+ +
Sbjct: 2 AAQKSFRIKQKMAKAKKQNRPLPQWIRLRTNNTIRYNAKRRNWRRTKMNI 51
>sp|P0DJ61|RL39_TETTS 60S ribosomal protein L39 OS=Tetrahymena thermophila (strain SB210)
GN=RPL39 PE=1 SV=1
Length = 52
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 38/50 (76%)
Query: 129 SAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLKL 178
A+KT +K + +K+KQNRP+P W R ++ IRYN+KRR+WRRTKLK+
Sbjct: 2 GANKTLNMKKRFGRKIKQNRPLPNWYRYKSDTNIRYNSKRRNWRRTKLKI 51
>sp|P59472|RL39_AERPE 50S ribosomal protein L39e OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rpl39e
PE=3 SV=1
Length = 51
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 32/42 (76%)
Query: 137 KMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLKL 178
K++LA+ LK NR IP W+ +RT IR+N RRHWRR+KLK+
Sbjct: 10 KLRLARALKSNRAIPVWVVIRTSRRIRFNLLRRHWRRSKLKV 51
>sp|P13005|RL39_SULAC 50S ribosomal protein L39e OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=rpl39e PE=1 SV=2
Length = 51
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 34/50 (68%)
Query: 129 SAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLKL 178
S HK+ K++L K LK+N PIP W+ ++T IR+N RR+WRR LK+
Sbjct: 2 SKHKSLGKKLRLGKALKRNSPIPAWVIIKTQAEIRFNPLRRNWRRNNLKV 51
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 85 SAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTI 118
S HK+ K++L K LK+N PIP W+ ++T I
Sbjct: 2 SKHKSLGKKLRLGKALKRNSPIPAWVIIKTQAEI 35
>sp|A2BN55|RL39_HYPBU 50S ribosomal protein L39e OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=rpl39e PE=3 SV=1
Length = 51
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 31/41 (75%)
Query: 137 KMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLK 177
K++LAK LKQNR +P W+ ++T R + KRRHWRRTKLK
Sbjct: 10 KLRLAKALKQNRSVPIWVIIKTNRRFRDHPKRRHWRRTKLK 50
Score = 29.6 bits (65), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 93 KMKLAKKLKQNRPIPQWIRMRTGNTISVLYHCKSRH 128
K++LAK LKQNR +P W+ ++T H K RH
Sbjct: 10 KLRLAKALKQNRSVPIWVIIKTNRRFR--DHPKRRH 43
>sp|Q8TUY3|RL39_METKA 50S ribosomal protein L39e OS=Methanopyrus kandleri (strain AV19 /
DSM 6324 / JCM 9639 / NBRC 100938) GN=rpl39e PE=3 SV=1
Length = 51
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 31/41 (75%)
Query: 137 KMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLK 177
K+++AK +KQNR +P W+ +TG + N KRRHWRR+KLK
Sbjct: 10 KLRMAKAIKQNRRVPPWVVAKTGGRVIDNPKRRHWRRSKLK 50
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 93 KMKLAKKLKQNRPIPQWIRMRTGNTISVLYHCKSRH 128
K+++AK +KQNR +P W+ +TG V+ + K RH
Sbjct: 10 KLRMAKAIKQNRRVPPWVVAKTGG--RVIDNPKRRH 43
>sp|A8MAL5|RL39_CALMQ 50S ribosomal protein L39e OS=Caldivirga maquilingensis (strain
ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167) GN=rpl39e
PE=3 SV=1
Length = 52
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%)
Query: 129 SAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLKL 178
+ HK K++LA K NR P W+ ++T + YN KRR+WRR KLKL
Sbjct: 2 ATHKPLGFKLRLASAGKSNRNPPAWVMVKTDRKVTYNTKRRNWRRVKLKL 51
>sp|Q980F9|RL39_SULSO 50S ribosomal protein L39e OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=rpl39e PE=3 SV=2
Length = 51
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 32/50 (64%)
Query: 129 SAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLKL 178
S +K K +LAK LK N PIP WI ++T +RYN RR+WRR LK+
Sbjct: 2 SRNKPVAKKFRLAKALKANSPIPIWIVLKTRGRVRYNPLRRNWRRNDLKV 51
>sp|C3N7D1|RL39_SULIY 50S ribosomal protein L39e OS=Sulfolobus islandicus (strain
Y.G.57.14 / Yellowstone #1) GN=rpl39e PE=3 SV=1
Length = 51
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 32/50 (64%)
Query: 129 SAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLKL 178
S +K K +LAK LK N PIP WI ++T +RYN RR+WRR LK+
Sbjct: 2 SRNKPVAKKFRLAKALKANSPIPIWIVLKTRGRVRYNPLRRNWRRNDLKV 51
>sp|C3MXG5|RL39_SULIM 50S ribosomal protein L39e OS=Sulfolobus islandicus (strain M.14.25
/ Kamchatka #1) GN=rpl39e PE=3 SV=1
Length = 51
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 32/50 (64%)
Query: 129 SAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLKL 178
S +K K +LAK LK N PIP WI ++T +RYN RR+WRR LK+
Sbjct: 2 SRNKPVAKKFRLAKALKANSPIPIWIVLKTRGRVRYNPLRRNWRRNDLKV 51
>sp|C3MR76|RL39_SULIL 50S ribosomal protein L39e OS=Sulfolobus islandicus (strain
L.S.2.15 / Lassen #1) GN=rpl39e PE=3 SV=1
Length = 51
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 32/50 (64%)
Query: 129 SAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLKL 178
S +K K +LAK LK N PIP WI ++T +RYN RR+WRR LK+
Sbjct: 2 SRNKPVAKKFRLAKALKANSPIPIWIVLKTRGRVRYNPLRRNWRRNDLKV 51
>sp|C4KII9|RL39_SULIK 50S ribosomal protein L39e OS=Sulfolobus islandicus (strain M.16.4
/ Kamchatka #3) GN=rpl39e PE=3 SV=1
Length = 51
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 32/50 (64%)
Query: 129 SAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLKL 178
S +K K +LAK LK N PIP WI ++T +RYN RR+WRR LK+
Sbjct: 2 SRNKPVAKKFRLAKALKANSPIPIWIVLKTRGRVRYNPLRRNWRRNDLKV 51
>sp|C3MZB1|RL39_SULIA 50S ribosomal protein L39e OS=Sulfolobus islandicus (strain
M.16.27) GN=rpl39e PE=3 SV=1
Length = 51
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 32/50 (64%)
Query: 129 SAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLKL 178
S +K K +LAK LK N PIP WI ++T +RYN RR+WRR LK+
Sbjct: 2 SRNKPVAKKFRLAKALKANSPIPIWIVLKTRGRVRYNPLRRNWRRNDLKV 51
>sp|P59473|RL39_PYRHO 50S ribosomal protein L39e OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rpl39e PE=3 SV=1
Length = 51
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 31/41 (75%)
Query: 137 KMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLK 177
K++LAK +KQNR +P W+ +RT + + KRRHWRRTKLK
Sbjct: 10 KLRLAKAMKQNRRVPVWVIVRTNRRVLTHPKRRHWRRTKLK 50
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 93 KMKLAKKLKQNRPIPQWIRMRTGNTISVLYHCKSRH 128
K++LAK +KQNR +P W+ +RT VL H K RH
Sbjct: 10 KLRLAKAMKQNRRVPVWVIVRTNR--RVLTHPKRRH 43
>sp|C3NGA3|RL39_SULIN 50S ribosomal protein L39e OS=Sulfolobus islandicus (strain
Y.N.15.51 / Yellowstone #2) GN=rpl39e PE=3 SV=1
Length = 51
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 32/50 (64%)
Query: 129 SAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLKL 178
S +K K +LAK LK N PIP WI ++T +RYN RR+WRR LK+
Sbjct: 2 SRNKPVAKKFRLAKALKANSPIPIWIVLKTRGRVRYNPFRRNWRRNDLKV 51
>sp|Q971I1|RL39_SULTO 50S ribosomal protein L39e OS=Sulfolobus tokodaii (strain DSM 16993
/ JCM 10545 / NBRC 100140 / 7) GN=rpl39e PE=3 SV=1
Length = 51
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 129 SAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLKL 178
S +K K++LA+ LK N P+P W+ ++T RYN RR WRR LK+
Sbjct: 2 SKNKPLGRKLRLARALKSNSPVPAWVIIKTNGKFRYNFHRRDWRRNDLKV 51
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 85 SAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTISVLYH 123
S +K K++LA+ LK N P+P W+ ++T +H
Sbjct: 2 SKNKPLGRKLRLARALKSNSPVPAWVIIKTNGKFRYNFH 40
>sp|O28212|RL39_ARCFU 50S ribosomal protein L39e OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=rpl39e PE=3 SV=1
Length = 50
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 33/49 (67%)
Query: 130 AHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLKL 178
KT +K +LAK KQNR P WI ++T ++ + KRRHWRR+KLK+
Sbjct: 2 GKKTVGVKKRLAKAYKQNRRAPVWITVKTKRSVFGSPKRRHWRRSKLKV 50
Score = 30.0 bits (66), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 86 AHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTISVLYHCKSRH 128
KT +K +LAK KQNR P WI ++T SV K RH
Sbjct: 2 GKKTVGVKKRLAKAYKQNRRAPVWITVKTKR--SVFGSPKRRH 42
>sp|Q5JGT6|RL39_PYRKO 50S ribosomal protein L39e OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=rpl39e PE=3 SV=1
Length = 51
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 131 HKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLK 177
+K F K++LAK KQNR +P W+ ++T + + KRRHWRRTKLK
Sbjct: 4 NKPFAKKLRLAKAAKQNRRVPVWVIVKTNRKVITHPKRRHWRRTKLK 50
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 87 HKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTISVLYHCKSRH 128
+K F K++LAK KQNR +P W+ ++T V+ H K RH
Sbjct: 4 NKPFAKKLRLAKAAKQNRRVPVWVIVKTNR--KVITHPKRRH 43
>sp|Q9UYI8|RL39_PYRAB 50S ribosomal protein L39e OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=rpl39e PE=3 SV=1
Length = 51
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 31/41 (75%)
Query: 137 KMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLK 177
K++LAK +KQNR +P W+ ++T + + KRRHWRRTKLK
Sbjct: 10 KLRLAKAMKQNRRVPVWVIVKTNRRVLTHPKRRHWRRTKLK 50
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 93 KMKLAKKLKQNRPIPQWIRMRTGNTISVLYHCKSRH 128
K++LAK +KQNR +P W+ ++T VL H K RH
Sbjct: 10 KLRLAKAMKQNRRVPVWVIVKTNR--RVLTHPKRRH 43
>sp|A4YH79|RL39_METS5 50S ribosomal protein L39e OS=Metallosphaera sedula (strain ATCC
51363 / DSM 5348) GN=rpl39e PE=3 SV=1
Length = 51
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 129 SAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLKL 178
S +K +K +L K LK N +P W+ ++T +R+N KRR+WRR LK+
Sbjct: 2 SRYKPSGLKKRLNKALKSNSSVPAWVILKTNGEVRFNPKRRNWRRNDLKV 51
>sp|C5A7H4|RL39_THEGJ 50S ribosomal protein L39e OS=Thermococcus gammatolerans (strain
DSM 15229 / JCM 11827 / EJ3) GN=rpl39e PE=3 SV=1
Length = 51
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 30/41 (73%)
Query: 137 KMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLK 177
K++LAK KQNR +P W+ ++T + + KRRHWRRTKLK
Sbjct: 10 KLRLAKAAKQNRRVPVWVIVKTNRKVMTHPKRRHWRRTKLK 50
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 93 KMKLAKKLKQNRPIPQWIRMRTGNTISVLYHCKSRH 128
K++LAK KQNR +P W+ ++T V+ H K RH
Sbjct: 10 KLRLAKAAKQNRRVPVWVIVKTNR--KVMTHPKRRH 43
>sp|Q9HM18|RL39_THEAC 50S ribosomal protein L39e OS=Thermoplasma acidophilum (strain ATCC
25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
GN=rpl39e PE=3 SV=1
Length = 51
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 129 SAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLKL 178
S +K K++L KK+KQNR +P W+ MRT + N RR+WRR LK+
Sbjct: 2 SRNKELGRKIRLMKKIKQNRRVPGWVMMRTARKVTQNPLRRNWRRGSLKI 51
Score = 33.5 bits (75), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 85 SAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIS 119
S +K K++L KK+KQNR +P W+ MRT ++
Sbjct: 2 SRNKELGRKIRLMKKIKQNRRVPGWVMMRTARKVT 36
>sp|Q97CU2|RL39_THEVO 50S ribosomal protein L39e OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=rpl39e PE=3 SV=1
Length = 51
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 129 SAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLKL 178
S +K K++L KK+KQNR +P W+ MRT + N RR+WRR LK+
Sbjct: 2 SRNKELGRKIRLMKKVKQNRRVPGWVMMRTARKVTQNPLRRNWRRGNLKI 51
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 85 SAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIS 119
S +K K++L KK+KQNR +P W+ MRT ++
Sbjct: 2 SRNKELGRKIRLMKKVKQNRRVPGWVMMRTARKVT 36
>sp|Q8U3S6|RL39_PYRFU 50S ribosomal protein L39e OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpl39e PE=1 SV=1
Length = 51
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 31/41 (75%)
Query: 137 KMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLK 177
K++LAK LKQNR +P W+ ++T + + KRR+WRRTKLK
Sbjct: 10 KLRLAKALKQNRRVPVWVIVKTNRRVLTHPKRRYWRRTKLK 50
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 93 KMKLAKKLKQNRPIPQWIRMRTGNTISVLYHCKSRH 128
K++LAK LKQNR +P W+ ++T VL H K R+
Sbjct: 10 KLRLAKALKQNRRVPVWVIVKTNR--RVLTHPKRRY 43
>sp|A3DNH3|RL39_STAMF 50S ribosomal protein L39e OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=rpl39e PE=3 SV=1
Length = 51
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 30/42 (71%)
Query: 137 KMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLKL 178
K++LA K+NRP+P W+ ++T +R + RHWRRTKLK+
Sbjct: 10 KLRLAAAYKENRPVPIWVSVKTRLKVRRGFRLRHWRRTKLKV 51
>sp|O27650|RL39_METTH 50S ribosomal protein L39e OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpl39e PE=3 SV=1
Length = 51
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 137 KMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLKL 178
K+++AK +QNR +P W+ ++T +R + K RHWRRTKLK+
Sbjct: 10 KLRMAKANRQNRRVPAWVMVKTNYRVRSHPKMRHWRRTKLKV 51
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.136 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,201,992
Number of Sequences: 539616
Number of extensions: 2319977
Number of successful extensions: 7320
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 7144
Number of HSP's gapped (non-prelim): 178
length of query: 178
length of database: 191,569,459
effective HSP length: 110
effective length of query: 68
effective length of database: 132,211,699
effective search space: 8990395532
effective search space used: 8990395532
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)