Query psy5233
Match_columns 178
No_of_seqs 310 out of 575
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 21:05:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5233.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5233hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5e_l L46, YL40, 60S ribosoma 100.0 1.8E-30 6.2E-35 174.1 3.4 51 128-178 1-51 (51)
2 3iz5_o 60S ribosomal protein L 100.0 2.1E-30 7.2E-35 173.7 3.3 51 128-178 1-51 (51)
3 4a18_B RPL39, ribosomal protei 100.0 2.2E-30 7.4E-35 174.3 3.3 51 128-178 1-51 (52)
4 3j21_f 50S ribosomal protein L 100.0 5.6E-30 1.9E-34 171.7 1.8 50 128-177 1-50 (51)
5 1ffk_Y Ribosomal protein L39E; 100.0 5E-29 1.7E-33 165.7 5.0 48 130-177 1-48 (49)
6 1vq8_2 50S ribosomal protein L 99.9 2.9E-29 1E-33 167.5 1.8 49 129-177 1-49 (50)
7 3u5e_l L46, YL40, 60S ribosoma 99.8 1.7E-20 5.8E-25 125.7 1.8 48 84-133 1-48 (51)
8 3iz5_o 60S ribosomal protein L 99.8 1.9E-20 6.6E-25 125.4 1.8 48 84-133 1-48 (51)
9 4a18_B RPL39, ribosomal protei 99.8 3.6E-20 1.2E-24 124.5 2.9 48 84-133 1-48 (52)
10 3e8t_A Takeout 1, takeout-like 99.8 1.9E-19 6.5E-24 147.4 7.0 67 14-80 153-220 (220)
11 3j21_f 50S ribosomal protein L 99.8 3.6E-20 1.2E-24 124.1 1.5 47 84-132 1-47 (51)
12 1ffk_Y Ribosomal protein L39E; 99.8 4.3E-19 1.5E-23 117.9 3.8 46 86-133 1-46 (49)
13 1vq8_2 50S ribosomal protein L 99.7 4.6E-19 1.6E-23 118.2 1.6 46 85-132 1-46 (50)
14 2rck_A JuvenIle hormone bindin 98.7 1.5E-08 5.1E-13 83.9 5.4 59 15-76 145-205 (225)
15 2rqf_A HJHBP, hemolymph juvenI 96.3 0.00055 1.9E-08 56.5 -0.6 68 12-80 154-225 (227)
16 2rqf_A HJHBP, hemolymph juvenI 70.8 0.85 2.9E-05 37.2 -0.0 53 30-82 167-221 (227)
17 1qyi_A ZR25, hypothetical prot 51.0 4.3 0.00015 35.6 0.8 52 24-75 59-111 (384)
18 3uv1_A DER F 7 allergen; super 37.8 85 0.0029 24.3 6.4 50 15-67 146-195 (196)
No 1
>3u5e_l L46, YL40, 60S ribosomal protein L39; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_O 2ww9_O 3izc_o 3izs_o 2wwb_O 3o5h_e 3o58_e 3u5i_l 4b6a_l 3jyw_1
Probab=99.96 E-value=1.8e-30 Score=174.07 Aligned_cols=51 Identities=71% Similarity=1.188 Sum_probs=49.4
Q ss_pred CCCcchHHHHHHHHHHHhccCCCCceEEEecCCcccccCcCCccccccCCC
Q psy5233 128 HSAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLKL 178 (178)
Q Consensus 128 ~~~~k~~~~K~rL~k~~kqN~~iP~w~~~kt~~~v~~n~krr~Wrr~kl~~ 178 (178)
|+||||+++|++||||++||+|||+||+||||++|+|||||||||||+|++
T Consensus 1 M~s~Kt~~~K~rLaK~~kqNr~iP~Wv~~KT~~kir~n~KRRhWRRtkL~~ 51 (51)
T 3u5e_l 1 MAAQKSFRIKQKMAKAKKQNRPLPQWIRLRTNNTIRYNAKRRNWRRTKMNI 51 (51)
T ss_dssp -CCSCCHHHHHHHHHHHHTCSCCCGGGGGSTTCCCCSCTTCCCTTTCCCCC
T ss_pred CCCcchHHHHHHHHHHHhccCCCCceEEEeCCCccccCCccccccccccCC
Confidence 899999999999999999999999999999999999999999999999986
No 2
>3iz5_o 60S ribosomal protein L39 (L39E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_o 2zkr_3
Probab=99.96 E-value=2.1e-30 Score=173.70 Aligned_cols=51 Identities=80% Similarity=1.252 Sum_probs=50.3
Q ss_pred CCCcchHHHHHHHHHHHhccCCCCceEEEecCCcccccCcCCccccccCCC
Q psy5233 128 HSAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLKL 178 (178)
Q Consensus 128 ~~~~k~~~~K~rL~k~~kqN~~iP~w~~~kt~~~v~~n~krr~Wrr~kl~~ 178 (178)
|+||||+++|++||||++||+|||+||+||||++|+|||||||||||+|++
T Consensus 1 M~s~Kt~~~K~rLaK~~kqNr~iP~Wv~~KT~~kir~n~kRRhWRRtkL~~ 51 (51)
T 3iz5_o 1 MPSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51 (51)
T ss_dssp CCSSCCHHHHHHHHHHHHHSSCCCGGGGTSCSSCCCCCCCCCCSSSSCCCC
T ss_pred CCCcchHHHHHHHHHHHhccCCCCceEEEeCCCccccCCccccccccccCC
Confidence 899999999999999999999999999999999999999999999999986
No 3
>4a18_B RPL39, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_B 4a1b_B 4a1d_B
Probab=99.96 E-value=2.2e-30 Score=174.27 Aligned_cols=51 Identities=53% Similarity=1.043 Sum_probs=49.4
Q ss_pred CCCcchHHHHHHHHHHHhccCCCCceEEEecCCcccccCcCCccccccCCC
Q psy5233 128 HSAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLKL 178 (178)
Q Consensus 128 ~~~~k~~~~K~rL~k~~kqN~~iP~w~~~kt~~~v~~n~krr~Wrr~kl~~ 178 (178)
|+||||+++|++||||++||+|||+||+||||++|+|||||||||||+|++
T Consensus 1 M~s~Kt~~~K~rLaK~~kqNr~iP~Wv~~KT~~kir~n~KRRhWRRtkL~~ 51 (52)
T 4a18_B 1 MGANKTLNMKKRFGRKIKQNRPLPNWYRYKSDTNIRYNSKRRNWRRTKLKI 51 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHTTSCCCTTGGGCSSCCCSSCTTCCCTTTSCCCC
T ss_pred CCCcchHHHHHHHHHHHhccCCCCceEEEeCCCccccCCccccccccccCc
Confidence 899999999999999999999999999999999999999999999999986
No 4
>3j21_f 50S ribosomal protein L39E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.95 E-value=5.6e-30 Score=171.71 Aligned_cols=50 Identities=46% Similarity=0.781 Sum_probs=49.4
Q ss_pred CCCcchHHHHHHHHHHHhccCCCCceEEEecCCcccccCcCCccccccCC
Q psy5233 128 HSAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLK 177 (178)
Q Consensus 128 ~~~~k~~~~K~rL~k~~kqN~~iP~w~~~kt~~~v~~n~krr~Wrr~kl~ 177 (178)
|+||||+++|++||||++||+|||+||+||||++|+|||||||||||+|+
T Consensus 1 M~s~Kt~~~K~rLaK~~kqNr~iP~Wv~~KT~~kir~n~KRRhWRRtkLk 50 (51)
T 3j21_f 1 MARNKPLAKKLRLAKALKQNRRVPVWVIVKTNRRVLTHPKRRYWRRTKLK 50 (51)
T ss_dssp CCCCCCHHHHHHHHHHHHHTSCCCHHHHHHHTSCCCSCTTCCCTTTCCCC
T ss_pred CCCcchHHHHHHHHHHHhccCCCCceEEEeCCCccccCCccccccccccC
Confidence 89999999999999999999999999999999999999999999999997
No 5
>1ffk_Y Ribosomal protein L39E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: a.137.1.1
Probab=99.95 E-value=5e-29 Score=165.73 Aligned_cols=48 Identities=33% Similarity=0.569 Sum_probs=47.1
Q ss_pred CcchHHHHHHHHHHHhccCCCCceEEEecCCcccccCcCCccccccCC
Q psy5233 130 AHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLK 177 (178)
Q Consensus 130 ~~k~~~~K~rL~k~~kqN~~iP~w~~~kt~~~v~~n~krr~Wrr~kl~ 177 (178)
|||||++|++||||+|||+|||+||+||||++|+|||||||||||+|+
T Consensus 1 ~~Kt~~~K~rLaK~~kQNrpiP~Wv~~KT~~kiryn~KRRhWRRtkL~ 48 (49)
T 1ffk_Y 1 GKKSKATKKRKAKLDNQNSRVPAYVMLKTDREVQRNHKRRHWRRNDTD 48 (49)
T ss_pred CCchHHHHHHHHHHHhccCCCCcEEEEecCCceecCCccccccccccC
Confidence 689999999999999999999999999999999999999999999997
No 6
>1vq8_2 50S ribosomal protein L39E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.137.1.1 PDB: 1vq4_2* 1vq5_2* 1vq6_2* 1vq7_2* 1s72_2* 1vq9_2* 1vqk_2* 1vql_2* 1vqm_2* 1vqn_2* 1vqo_2* 1vqp_2* 1yhq_2* 1yi2_2* 1yij_2* 1yit_2* 1yj9_2* 1yjn_2* 1yjw_2* 2otj_2* ...
Probab=99.95 E-value=2.9e-29 Score=167.49 Aligned_cols=49 Identities=37% Similarity=0.658 Sum_probs=44.4
Q ss_pred CCcchHHHHHHHHHHHhccCCCCceEEEecCCcccccCcCCccccccCC
Q psy5233 129 SAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLK 177 (178)
Q Consensus 129 ~~~k~~~~K~rL~k~~kqN~~iP~w~~~kt~~~v~~n~krr~Wrr~kl~ 177 (178)
+|||||++|++||||+|||+|||+||+||||++|+|||||||||||+|+
T Consensus 1 ~s~Kt~~~K~rLaK~~kQNrpiP~Wv~~KT~~kiryn~KRRhWRRtkL~ 49 (50)
T 1vq8_2 1 MGKKSKATKKRLAKLDNQNSRVPAWVMLKTDREVQRNHKRRHWRRNDTD 49 (50)
T ss_dssp -CCCCHHHHHHHHHHHHHSSCCCHHHHHHTTC---CCTTCCCTTTCCCC
T ss_pred CCcchHHHHHHHHHHHhccCCCCceEEEecCCceecCCccccccccccC
Confidence 5899999999999999999999999999999999999999999999997
No 7
>3u5e_l L46, YL40, 60S ribosomal protein L39; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_O 2ww9_O 3izc_o 3izs_o 2wwb_O 3o5h_e 3o58_e 3u5i_l 4b6a_l 3jyw_1
Probab=99.79 E-value=1.7e-20 Score=125.68 Aligned_cols=48 Identities=56% Similarity=0.892 Sum_probs=44.4
Q ss_pred ccccchhHHHHHHHHHhhcCCCCCcceeeecCCceeEeeccCCCCCCcch
Q psy5233 84 RSAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTISVLYHCKSRHSAHKT 133 (178)
Q Consensus 84 ~~~~k~~~~K~rLak~~kqNr~vP~wv~~kt~~~v~~~~~~krr~~~~k~ 133 (178)
|+||||+++|++||||++||||||+||+||||++|+ ||+++|+=+...
T Consensus 1 M~s~Kt~~~K~rLaK~~kqNr~iP~Wv~~KT~~kir--~n~KRRhWRRtk 48 (51)
T 3u5e_l 1 MAAQKSFRIKQKMAKAKKQNRPLPQWIRLRTNNTIR--YNAKRRNWRRTK 48 (51)
T ss_dssp -CCSCCHHHHHHHHHHHHTCSCCCGGGGGSTTCCCC--SCTTCCCTTTCC
T ss_pred CCCcchHHHHHHHHHHHhccCCCCceEEEeCCCccc--cCCccccccccc
Confidence 899999999999999999999999999999999999 999999876544
No 8
>3iz5_o 60S ribosomal protein L39 (L39E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_o 2zkr_3
Probab=99.79 E-value=1.9e-20 Score=125.38 Aligned_cols=48 Identities=65% Similarity=0.971 Sum_probs=45.3
Q ss_pred ccccchhHHHHHHHHHhhcCCCCCcceeeecCCceeEeeccCCCCCCcch
Q psy5233 84 RSAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTISVLYHCKSRHSAHKT 133 (178)
Q Consensus 84 ~~~~k~~~~K~rLak~~kqNr~vP~wv~~kt~~~v~~~~~~krr~~~~k~ 133 (178)
|+||||+++|++||||++||||||+||+||||++|+ ||+++|+=+...
T Consensus 1 M~s~Kt~~~K~rLaK~~kqNr~iP~Wv~~KT~~kir--~n~kRRhWRRtk 48 (51)
T 3iz5_o 1 MPSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIR--YNAKRRHWRRTK 48 (51)
T ss_dssp CCSSCCHHHHHHHHHHHHHSSCCCGGGGTSCSSCCC--CCCCCCCSSSSC
T ss_pred CCCcchHHHHHHHHHHHhccCCCCceEEEeCCCccc--cCCccccccccc
Confidence 899999999999999999999999999999999999 999999876654
No 9
>4a18_B RPL39, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_B 4a1b_B 4a1d_B
Probab=99.78 E-value=3.6e-20 Score=124.53 Aligned_cols=48 Identities=35% Similarity=0.719 Sum_probs=44.4
Q ss_pred ccccchhHHHHHHHHHhhcCCCCCcceeeecCCceeEeeccCCCCCCcch
Q psy5233 84 RSAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTISVLYHCKSRHSAHKT 133 (178)
Q Consensus 84 ~~~~k~~~~K~rLak~~kqNr~vP~wv~~kt~~~v~~~~~~krr~~~~k~ 133 (178)
|+|||||++|++||||++||||||+||+||||++|+ ||+++|+=+...
T Consensus 1 M~s~Kt~~~K~rLaK~~kqNr~iP~Wv~~KT~~kir--~n~KRRhWRRtk 48 (52)
T 4a18_B 1 MGANKTLNMKKRFGRKIKQNRPLPNWYRYKSDTNIR--YNSKRRNWRRTK 48 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHTTSCCCTTGGGCSSCCCS--SCTTCCCTTTSC
T ss_pred CCCcchHHHHHHHHHHHhccCCCCceEEEeCCCccc--cCCccccccccc
Confidence 899999999999999999999999999999999999 999999876544
No 10
>3e8t_A Takeout 1, takeout-like protein 1; transport protein; HET: UQ8; 1.30A {Epiphyas postvittana} PDB: 3e8w_A*
Probab=99.78 E-value=1.9e-19 Score=147.39 Aligned_cols=67 Identities=24% Similarity=0.274 Sum_probs=65.0
Q ss_pred ccceeEEecccCCCCc-hhhHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHHHHHHhhccCcchhhccc
Q psy5233 14 NECIKNTLQSLIPKFK-DGTIALTFINQFWKVVYDALLPFAEEGFAKVAKPVLNKVFLSVPYEQLDQI 80 (178)
Q Consensus 14 ~~~v~~~l~NLFNGnk-Lgd~~N~fLNeNW~ev~~El~P~ie~~~~~if~~i~NkiF~kvP~delfp~ 80 (178)
+++++++|+||||||+ |++++|+|+||||++|++|++|.++++++++|.+++|++|.++|||+||++
T Consensus 153 ~~~~~~~~~nLfng~~~L~~~~n~~iN~nw~~i~~e~~p~i~~~~~~~~~~i~n~if~~~p~~~lF~~ 220 (220)
T 3e8t_A 153 KDNAQFGLTNLFNGNKELSDTMLTFLNQNWKQVSEEFGKPVMEAAAKKIFKNIKHFLAKVPIAEIANV 220 (220)
T ss_dssp EEEEEEEESSBGGGCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSBC
T ss_pred CCcEEEEEEcCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhcC
Confidence 4899999999999999 999999999999999999999999999999999999999999999999974
No 11
>3j21_f 50S ribosomal protein L39E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.77 E-value=3.6e-20 Score=124.10 Aligned_cols=47 Identities=34% Similarity=0.523 Sum_probs=44.6
Q ss_pred ccccchhHHHHHHHHHhhcCCCCCcceeeecCCceeEeeccCCCCCCcc
Q psy5233 84 RSAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTISVLYHCKSRHSAHK 132 (178)
Q Consensus 84 ~~~~k~~~~K~rLak~~kqNr~vP~wv~~kt~~~v~~~~~~krr~~~~k 132 (178)
|+|||||++|++||||++||||||+||+||||++|+ ||+++|+=+..
T Consensus 1 M~s~Kt~~~K~rLaK~~kqNr~iP~Wv~~KT~~kir--~n~KRRhWRRt 47 (51)
T 3j21_f 1 MARNKPLAKKLRLAKALKQNRRVPVWVIVKTNRRVL--THPKRRYWRRT 47 (51)
T ss_dssp CCCCCCHHHHHHHHHHHHHTSCCCHHHHHHHTSCCC--SCTTCCCTTTC
T ss_pred CCCcchHHHHHHHHHHHhccCCCCceEEEeCCCccc--cCCcccccccc
Confidence 899999999999999999999999999999999999 99999986654
No 12
>1ffk_Y Ribosomal protein L39E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: a.137.1.1
Probab=99.75 E-value=4.3e-19 Score=117.95 Aligned_cols=46 Identities=24% Similarity=0.337 Sum_probs=42.7
Q ss_pred ccchhHHHHHHHHHhhcCCCCCcceeeecCCceeEeeccCCCCCCcch
Q psy5233 86 AHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTISVLYHCKSRHSAHKT 133 (178)
Q Consensus 86 ~~k~~~~K~rLak~~kqNr~vP~wv~~kt~~~v~~~~~~krr~~~~k~ 133 (178)
|||||++|++||||++||||||+||+||||++|+ ||+++|+=+...
T Consensus 1 ~~Kt~~~K~rLaK~~kQNrpiP~Wv~~KT~~kir--yn~KRRhWRRtk 46 (49)
T 1ffk_Y 1 GKKSKATKKRKAKLDNQNSRVPAYVMLKTDREVQ--RNHKRRHWRRND 46 (49)
T ss_pred CCchHHHHHHHHHHHhccCCCCcEEEEecCCcee--cCCccccccccc
Confidence 6999999999999999999999999999999999 999998866543
No 13
>1vq8_2 50S ribosomal protein L39E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.137.1.1 PDB: 1vq4_2* 1vq5_2* 1vq6_2* 1vq7_2* 1s72_2* 1vq9_2* 1vqk_2* 1vql_2* 1vqm_2* 1vqn_2* 1vqo_2* 1vqp_2* 1yhq_2* 1yi2_2* 1yij_2* 1yit_2* 1yj9_2* 1yjn_2* 1yjw_2* 2otj_2* ...
Probab=99.73 E-value=4.6e-19 Score=118.21 Aligned_cols=46 Identities=28% Similarity=0.444 Sum_probs=39.6
Q ss_pred cccchhHHHHHHHHHhhcCCCCCcceeeecCCceeEeeccCCCCCCcc
Q psy5233 85 SAHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTISVLYHCKSRHSAHK 132 (178)
Q Consensus 85 ~~~k~~~~K~rLak~~kqNr~vP~wv~~kt~~~v~~~~~~krr~~~~k 132 (178)
.|||||++|++||||++||||||+||+||||++|+ ||+++|+=+..
T Consensus 1 ~s~Kt~~~K~rLaK~~kQNrpiP~Wv~~KT~~kir--yn~KRRhWRRt 46 (50)
T 1vq8_2 1 MGKKSKATKKRLAKLDNQNSRVPAWVMLKTDREVQ--RNHKRRHWRRN 46 (50)
T ss_dssp -CCCCHHHHHHHHHHHHHSSCCCHHHHHHTTC-----CCTTCCCTTTC
T ss_pred CCcchHHHHHHHHHHHhccCCCCceEEEecCCcee--cCCcccccccc
Confidence 48999999999999999999999999999999999 99999986654
No 14
>2rck_A JuvenIle hormone binding protein; hemolymph, JHBP-fold; HET: NAG; 2.44A {Galleria mellonella}
Probab=98.69 E-value=1.5e-08 Score=83.90 Aligned_cols=59 Identities=3% Similarity=-0.115 Sum_probs=49.3
Q ss_pred cceeEEecccCCCCc--hhhHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHHHHHHhhccCcchh
Q psy5233 15 ECIKNTLQSLIPKFK--DGTIALTFINQFWKVVYDALLPFAEEGFAKVAKPVLNKVFLSVPYEQ 76 (178)
Q Consensus 15 ~~v~~~l~NLFNGnk--Lgd~~N~fLNeNW~ev~~El~P~ie~~~~~if~~i~NkiF~kvP~de 76 (178)
.++++.++. +.+=+ +|+++|+|+||||+ ++|++|.+++.++++|.+++|++|..+|+|-
T Consensus 145 ~~~~v~~~~-ig~~~~~~~~~~n~~iN~nw~--~~~ikP~i~~~~~~~~~~i~N~if~~~~~~~ 205 (225)
T 2rck_A 145 GPETVSCEI-FGEPTLSVSSTLEDALKLDSD--FKKIFTEYGKQLTEGRKQTACRIVETVYAVS 205 (225)
T ss_dssp CCCEEEEEE-CSCCEEEECHHHHHHHHTCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEE-cCcEEEEHHHHHHHHHHhCcc--hhhhhHHHHHHHHHHHHHHHHHHHHhCcHhh
Confidence 344455532 33333 79999999999999 9999999999999999999999999999884
No 15
>2rqf_A HJHBP, hemolymph juvenIle hormone binding protein; HET: JH3; NMR {Bombyx mori} PDB: 3a1z_A 3aos_A* 3aot_A*
Probab=96.27 E-value=0.00055 Score=56.53 Aligned_cols=68 Identities=9% Similarity=-0.143 Sum_probs=48.1
Q ss_pred CCccceeEEecccCCCCc-hhhHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHHHHH---HhhccCcchhhccc
Q psy5233 12 DFNECIKNTLQSLIPKFK-DGTIALTFINQFWKVVYDALLPFAEEGFAKVAKPVLN---KVFLSVPYEQLDQI 80 (178)
Q Consensus 12 d~~~~v~~~l~NLFNGnk-Lgd~~N~fLNeNW~ev~~El~P~ie~~~~~if~~i~N---kiF~kvP~delfp~ 80 (178)
+.-++++++++++++ +. ++|.+|+++.++|+...+..++.|.+.++.+|.+++| .+|.-.|+|.+|-.
T Consensus 154 ~~ig~~~~~l~~~l~-~~~~~d~~n~~~~~~y~~~~~~~~~~i~~ive~~~~~v~~~~~~~~~~~p~~~~~~~ 225 (227)
T 2rqf_A 154 ESIGEPKITLSSDLS-SALEKDSGNNSLEPDMEPLKTLRQAAICKIAEACYISVVHNIRASAKILPASSFFEN 225 (227)
T ss_dssp EECSSCEEEECHHHH-HHHHHHHTCSSCCTTSSSHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHSCSTTTBSC
T ss_pred EEeccEEEEcchhhh-hhhhhchhHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhhc
Confidence 345678888886665 33 4455554444445555566778888888888888887 99999999999853
No 16
>2rqf_A HJHBP, hemolymph juvenIle hormone binding protein; HET: JH3; NMR {Bombyx mori} PDB: 3a1z_A 3aos_A* 3aot_A*
Probab=70.79 E-value=0.85 Score=37.24 Aligned_cols=53 Identities=9% Similarity=0.066 Sum_probs=43.6
Q ss_pred hhh-HHHHHHhhcHHHHHHHHhHHHHHHHHHHHHHHHHHhhccCcch-hhccccc
Q psy5233 30 DGT-IALTFINQFWKVVYDALLPFAEEGFAKVAKPVLNKVFLSVPYE-QLDQIGT 82 (178)
Q Consensus 30 Lgd-~~N~fLNeNW~ev~~El~P~ie~~~~~if~~i~NkiF~kvP~d-elfp~~~ 82 (178)
|++ .++++.|++|+..|+.+.+...+.+.+++..++-.+|..+-.. .+||.+.
T Consensus 167 l~~~~~~d~~n~~~~~~y~~~~~~~~~~i~~ive~~~~~v~~~~~~~~~~~p~~~ 221 (227)
T 2rqf_A 167 LSSALEKDSGNNSLEPDMEPLKTLRQAAICKIAEACYISVVHNIRASAKILPASS 221 (227)
T ss_dssp HHHHHHHHHTCSSCCTTSSSHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHSCSTT
T ss_pred hhhhhhhchhHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 666 5599999999999999999999999999999999999974332 3455543
No 17
>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13
Probab=50.99 E-value=4.3 Score=35.62 Aligned_cols=52 Identities=10% Similarity=0.086 Sum_probs=36.1
Q ss_pred cCCCCc-hhhHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHHHHHHhhccCcch
Q psy5233 24 LIPKFK-DGTIALTFINQFWKVVYDALLPFAEEGFAKVAKPVLNKVFLSVPYE 75 (178)
Q Consensus 24 LFNGnk-Lgd~~N~fLNeNW~ev~~El~P~ie~~~~~if~~i~NkiF~kvP~d 75 (178)
+|.+|+ |...=..=+|.||..+|=.+.=-+.+.+.++.......++..-|++
T Consensus 59 ~~~~~~~~~~lk~~g~n~nwd~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~ 111 (384)
T 1qyi_A 59 IFQKDKILNKLKSLGLNSNWDMLFIVFSIHLIDILKKLSHDEIEAFMYQDEPV 111 (384)
T ss_dssp HHTTTHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHCSSCH
T ss_pred HhccHHHHHHHHHcccccCCchhHHHHHHHHHHHHHHhCHHHHHHHhhccccc
Confidence 788888 7777778899999999988776665555555555554444444443
No 18
>3uv1_A DER F 7 allergen; super-roll; 2.00A {Dermatophagoides farinae}
Probab=37.84 E-value=85 Score=24.26 Aligned_cols=50 Identities=16% Similarity=0.046 Sum_probs=31.7
Q ss_pred cceeEEecccCCCCchhhHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy5233 15 ECIKNTLQSLIPKFKDGTIALTFINQFWKVVYDALLPFAEEGFAKVAKPVLNK 67 (178)
Q Consensus 15 ~~v~~~l~NLFNGnkLgd~~N~fLNeNW~ev~~El~P~ie~~~~~if~~i~Nk 67 (178)
+++.++|++|=. |+-.++-++|-=-..+-..+.+.+|+.+...+.+-++|
T Consensus 146 ~~i~v~~~Glg~---ld~l~~~i~n~~~~l~~~~I~~~ie~~v~~~i~~~l~K 195 (196)
T 3uv1_A 146 ANVVNHIGGLSI---LDPIFGVLSDVLTAIFQDTVRKEMTKVLAPAFKRELEK 195 (196)
T ss_dssp SEEEEEETTCCT---TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cceEEEEECCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456666665521 55556666665555666777777777777777765543
Done!