RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5233
         (178 letters)



>d1vqo21 a.137.1.1 (2:1-49) Ribosomal protein L39e {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 49

 Score = 72.9 bits (179), Expect = 1e-18
 Identities = 18/48 (37%), Positives = 26/48 (54%)

Query: 130 AHKTFRIKMKLAKKLKQNRPIPQWIRMRTGNTIRYNAKRRHWRRTKLK 177
             K+   K +LAK   QN  +P W+ ++T   ++ N KRRHWRR    
Sbjct: 1   GKKSKATKKRLAKLDNQNSRVPAWVMLKTDREVQRNHKRRHWRRNDTD 48


>d1kzqa2 b.6.2.1 (A:132-255) Major surface antigen p30, SAG1
          {Toxoplasma gondii [TaxId: 5811]}
          Length = 124

 Score = 24.4 bits (53), Expect = 5.4
 Identities = 4/30 (13%), Positives = 12/30 (40%), Gaps = 2/30 (6%)

Query: 1  TYAEICYRNSPDFNECIKNTLQSLIPKFKD 30
             + C  +      C + + + ++PK  +
Sbjct: 46 DNNQYC--SGTTLTGCNEKSFKDILPKLTE 73


>d1v0ea1 b.68.1.2 (A:245-760) Endo-alpha-sialidase {Bacteriophage
           K1F [TaxId: 344021]}
          Length = 516

 Score = 25.4 bits (55), Expect = 5.6
 Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 8/74 (10%)

Query: 102 QNRPIPQWIRMRTGNTISVLYHCKSRHSA-HKTFRI-------KMKLAKKLKQNRPIPQW 153
           Q    P+W+     +  +V YHC S     ++ F +       K  L      +RP+ + 
Sbjct: 123 QTWSTPEWLTDLHPDYPTVNYHCMSMGVCRNRLFAMIETRTLAKNALTNCALWDRPMSRS 182

Query: 154 IRMRTGNTIRYNAK 167
           + +  G T   N +
Sbjct: 183 LHLTGGITKAANQR 196


>d2hhva1 c.55.3.5 (A:298-468) Exonuclease domain of prokaryotic DNA
           polymerase {Bacillus stearothermophilus, newly
           identified strain as yet unnamed [TaxId: 1422]}
          Length = 171

 Score = 24.3 bits (52), Expect = 8.2
 Identities = 3/18 (16%), Positives = 9/18 (50%)

Query: 86  AHKTFRIKMKLAKKLKQN 103
           A   + ++     +L++N
Sbjct: 154 AAAIWELERPFLDELRRN 171



 Score = 24.3 bits (52), Expect = 8.2
 Identities = 3/18 (16%), Positives = 9/18 (50%)

Query: 130 AHKTFRIKMKLAKKLKQN 147
           A   + ++     +L++N
Sbjct: 154 AAAIWELERPFLDELRRN 171


>d1kqpa_ c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacillus
           subtilis [TaxId: 1423]}
          Length = 271

 Score = 24.5 bits (52), Expect = 9.5
 Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 5/41 (12%)

Query: 70  LSVPYEQLDQIGTNRSAHKTFRIKMKLAKKLKQN---RPIP 107
           L + Y+++D     +      ++   L K+       R +P
Sbjct: 224 LGISYDEIDDYLEGKEVSA--KVSEALEKRYSMTEHKRQVP 262


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.136    0.422 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 683,368
Number of extensions: 30120
Number of successful extensions: 141
Number of sequences better than 10.0: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 14
Length of query: 178
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 98
Effective length of database: 1,309,196
Effective search space: 128301208
Effective search space used: 128301208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.6 bits)