BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy524
         (111 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1YKW|A Chain A, Crystal Structure Of A Novel Rubisco-Like Protein From The
           Green Sulfur Bacterium Chlorobium Tepidum
 pdb|1YKW|B Chain B, Crystal Structure Of A Novel Rubisco-Like Protein From The
           Green Sulfur Bacterium Chlorobium Tepidum
          Length = 435

 Score = 25.4 bits (54), Expect = 8.0,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 13/97 (13%)

Query: 13  ALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKT 72
            L   KD   L  +  S++EE    L   ++K+E    EPK  L + + +E++ L ++  
Sbjct: 193 GLDIAKDDEMLADVTWSSIEERAAHLGKARRKAEAETGEPKIYL-ANITDEVDSLMEK-- 249

Query: 73  QLTHHIFMVATENKQLWTKL-------SMLTEETNVP 102
              H + +    N  L   L        ML+  T VP
Sbjct: 250 ---HDVAVRNGANALLINALPVGLSAVRMLSNYTQVP 283


>pdb|1TEL|A Chain A, Crystal Structure Of A Rubisco-Like Protein From
           Chlorobium Tepidum
 pdb|1TEL|B Chain B, Crystal Structure Of A Rubisco-Like Protein From
           Chlorobium Tepidum
          Length = 435

 Score = 25.4 bits (54), Expect = 8.0,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 13/97 (13%)

Query: 13  ALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKT 72
            L   KD   L  +  S++EE    L   ++K+E    EPK  L + + +E++ L ++  
Sbjct: 193 GLDIAKDDEMLADVTWSSIEERAAHLGKARRKAEAETGEPKIYL-ANITDEVDSLMEK-- 249

Query: 73  QLTHHIFMVATENKQLWTKL-------SMLTEETNVP 102
              H + +    N  L   L        ML+  T VP
Sbjct: 250 ---HDVAVRNGANALLINALPVGLSAVRMLSNYTQVP 283


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.308    0.122    0.317 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,536,497
Number of Sequences: 62578
Number of extensions: 75039
Number of successful extensions: 269
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 255
Number of HSP's gapped (non-prelim): 25
length of query: 111
length of database: 14,973,337
effective HSP length: 75
effective length of query: 36
effective length of database: 10,279,987
effective search space: 370079532
effective search space used: 370079532
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 45 (21.9 bits)