Query psy524
Match_columns 111
No_of_seqs 22 out of 24
Neff 2.9
Searched_HMMs 46136
Date Fri Aug 16 21:18:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy524.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/524hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04849 HAP1_N: HAP1 N-termin 94.8 0.095 2.1E-06 44.0 6.5 72 22-93 163-265 (306)
2 PF01166 TSC22: TSC-22/dip/bun 94.4 0.052 1.1E-06 36.4 3.2 43 7-49 9-51 (59)
3 PF10805 DUF2730: Protein of u 91.1 2.6 5.5E-05 29.7 8.1 63 6-81 29-91 (106)
4 PRK10884 SH3 domain-containing 89.7 2.3 4.9E-05 33.5 7.5 77 16-96 90-166 (206)
5 PF00170 bZIP_1: bZIP transcri 89.6 2.2 4.7E-05 27.0 6.1 40 16-70 23-62 (64)
6 PF00038 Filament: Intermediat 88.8 6.1 0.00013 30.9 9.3 79 13-91 5-90 (312)
7 PF14197 Cep57_CLD_2: Centroso 88.1 2.3 5E-05 28.4 5.7 61 9-70 2-62 (69)
8 PF07926 TPR_MLP1_2: TPR/MLP1/ 87.9 4.2 9.1E-05 29.2 7.4 73 9-81 56-131 (132)
9 PF07888 CALCOCO1: Calcium bin 87.8 5.3 0.00012 36.2 9.4 89 9-97 361-459 (546)
10 PF07106 TBPIP: Tat binding pr 87.4 4.6 0.0001 29.6 7.5 60 7-79 74-133 (169)
11 KOG3119|consensus 87.3 2.4 5.3E-05 34.2 6.5 53 7-74 203-255 (269)
12 PF11559 ADIP: Afadin- and alp 86.2 10 0.00022 27.2 9.5 76 7-97 40-115 (151)
13 PF08614 ATG16: Autophagy prot 86.0 3.2 7E-05 31.3 6.2 81 11-92 101-181 (194)
14 PF09730 BicD: Microtubule-ass 84.8 6.4 0.00014 36.6 8.6 53 27-87 420-474 (717)
15 PF11932 DUF3450: Protein of u 84.5 17 0.00037 28.3 9.8 17 22-38 38-54 (251)
16 PF03962 Mnd1: Mnd1 family; I 84.1 8.9 0.00019 29.5 7.9 65 13-79 63-127 (188)
17 PF06156 DUF972: Protein of un 83.8 10 0.00022 27.2 7.6 47 8-69 11-57 (107)
18 PF14662 CCDC155: Coiled-coil 82.8 7.4 0.00016 31.2 7.2 104 6-109 9-121 (193)
19 PF15070 GOLGA2L5: Putative go 81.7 17 0.00036 33.1 9.8 78 14-92 38-116 (617)
20 TIGR03752 conj_TIGR03752 integ 79.8 16 0.00035 32.7 8.9 31 14-44 61-91 (472)
21 KOG4360|consensus 79.6 5.5 0.00012 36.6 6.0 25 19-43 159-183 (596)
22 PF07888 CALCOCO1: Calcium bin 77.9 19 0.00041 32.8 8.8 37 8-44 153-189 (546)
23 PF04156 IncA: IncA protein; 77.8 18 0.0004 26.4 7.5 30 10-39 93-122 (191)
24 PF06005 DUF904: Protein of un 77.4 19 0.00041 24.2 8.8 52 13-79 12-63 (72)
25 PF04111 APG6: Autophagy prote 76.7 26 0.00057 28.9 8.8 39 5-43 43-81 (314)
26 PF07558 Shugoshin_N: Shugoshi 76.4 2.2 4.7E-05 26.5 1.9 27 15-41 17-43 (46)
27 KOG0971|consensus 76.3 11 0.00024 37.0 7.3 71 9-79 329-427 (1243)
28 KOG4797|consensus 75.8 7.8 0.00017 29.3 5.0 36 7-42 62-97 (123)
29 PF08172 CASP_C: CASP C termin 75.4 13 0.00028 30.0 6.6 50 23-87 90-139 (248)
30 KOG0804|consensus 75.0 15 0.00032 33.3 7.3 36 9-44 372-407 (493)
31 KOG0239|consensus 74.7 24 0.00053 32.4 8.8 83 10-97 232-314 (670)
32 smart00338 BRLZ basic region l 74.6 11 0.00023 23.8 4.8 32 57-88 28-59 (65)
33 smart00338 BRLZ basic region l 74.0 18 0.0004 22.7 5.8 20 20-39 27-46 (65)
34 PRK13169 DNA replication intia 73.8 29 0.00062 25.3 7.4 44 10-68 13-56 (110)
35 PF06005 DUF904: Protein of un 73.3 8.5 0.00018 26.0 4.3 44 17-75 9-52 (72)
36 PF14988 DUF4515: Domain of un 72.9 28 0.00061 27.3 7.7 90 10-99 66-179 (206)
37 PF07106 TBPIP: Tat binding pr 72.0 22 0.00049 26.0 6.7 41 57-97 95-137 (169)
38 KOG4005|consensus 72.0 12 0.00026 31.7 5.8 62 9-70 80-147 (292)
39 TIGR03752 conj_TIGR03752 integ 71.4 21 0.00045 32.0 7.4 43 2-44 55-98 (472)
40 PF01166 TSC22: TSC-22/dip/bun 70.4 7.3 0.00016 26.2 3.4 31 53-90 12-42 (59)
41 PF14257 DUF4349: Domain of un 70.2 7.6 0.00016 30.2 4.0 74 20-93 133-219 (262)
42 PF04340 DUF484: Protein of un 69.8 11 0.00024 28.8 4.8 38 56-97 48-85 (225)
43 KOG1962|consensus 69.8 7.8 0.00017 31.4 4.1 44 52-95 169-212 (216)
44 COG1792 MreC Cell shape-determ 66.5 17 0.00037 29.6 5.5 31 14-44 78-108 (284)
45 PF04156 IncA: IncA protein; 64.6 53 0.0012 24.0 8.4 30 14-43 90-119 (191)
46 PRK10963 hypothetical protein; 62.4 17 0.00038 28.2 4.6 39 55-97 44-82 (223)
47 PF09789 DUF2353: Uncharacteri 62.1 38 0.00083 28.8 6.9 77 9-100 130-213 (319)
48 PF00170 bZIP_1: bZIP transcri 61.7 22 0.00048 22.3 4.3 31 57-87 28-58 (64)
49 PF13851 GAS: Growth-arrest sp 61.5 21 0.00046 27.6 4.9 47 52-98 24-70 (201)
50 PF08614 ATG16: Autophagy prot 61.4 2.7 5.8E-05 31.8 0.0 74 21-94 26-113 (194)
51 PF04102 SlyX: SlyX; InterPro 60.9 44 0.00095 21.8 7.1 48 17-79 2-49 (69)
52 COG4026 Uncharacterized protei 60.9 1E+02 0.0023 26.1 9.8 74 16-97 132-205 (290)
53 PF09730 BicD: Microtubule-ass 60.5 38 0.00082 31.7 7.1 69 9-77 80-157 (717)
54 PRK10884 SH3 domain-containing 60.5 69 0.0015 25.2 7.7 76 12-91 93-168 (206)
55 PF06305 DUF1049: Protein of u 60.4 31 0.00068 21.3 4.8 25 15-39 44-68 (68)
56 TIGR02209 ftsL_broad cell divi 60.4 43 0.00093 21.5 6.7 36 10-45 22-57 (85)
57 PF13874 Nup54: Nucleoporin co 59.9 64 0.0014 23.4 7.8 48 56-103 73-127 (141)
58 PF05557 MAD: Mitotic checkpoi 58.8 45 0.00098 29.9 7.2 73 2-77 554-628 (722)
59 PF09755 DUF2046: Uncharacteri 57.9 67 0.0014 27.5 7.7 32 7-38 36-67 (310)
60 PF14775 NYD-SP28_assoc: Sperm 57.9 22 0.00047 23.1 3.8 32 9-41 20-55 (60)
61 PF07412 Geminin: Geminin; In 57.1 26 0.00057 28.1 4.9 27 9-39 119-145 (200)
62 PF10211 Ax_dynein_light: Axon 56.6 83 0.0018 24.1 7.4 57 22-78 123-186 (189)
63 PF03962 Mnd1: Mnd1 family; I 56.5 69 0.0015 24.6 7.0 65 7-73 64-128 (188)
64 PF07716 bZIP_2: Basic region 56.2 45 0.00097 20.5 5.3 30 11-40 17-46 (54)
65 PF12325 TMF_TATA_bd: TATA ele 55.4 80 0.0017 23.1 7.2 58 14-76 32-89 (120)
66 PRK13729 conjugal transfer pil 55.3 70 0.0015 28.8 7.7 55 9-78 66-120 (475)
67 PF11932 DUF3450: Protein of u 55.1 99 0.0021 24.1 8.2 26 14-39 51-76 (251)
68 PF10473 CENP-F_leu_zip: Leuci 54.4 92 0.002 23.5 7.5 34 55-88 52-85 (140)
69 PRK10920 putative uroporphyrin 54.0 1.5E+02 0.0032 25.7 9.3 35 55-89 99-133 (390)
70 PF06632 XRCC4: DNA double-str 53.6 58 0.0013 27.7 6.6 44 21-79 139-182 (342)
71 KOG4643|consensus 53.5 69 0.0015 31.9 7.8 70 9-78 520-601 (1195)
72 PTZ00464 SNF-7-like protein; P 53.0 1.1E+02 0.0025 24.1 8.3 73 10-83 16-96 (211)
73 COG3074 Uncharacterized protei 52.9 79 0.0017 22.3 7.7 41 21-76 20-60 (79)
74 PRK04325 hypothetical protein; 51.9 70 0.0015 21.4 7.0 24 15-38 5-28 (74)
75 KOG4343|consensus 51.7 25 0.00055 32.7 4.5 24 18-41 301-324 (655)
76 PRK09841 cryptic autophosphory 51.7 73 0.0016 28.8 7.3 35 9-43 264-298 (726)
77 PF02183 HALZ: Homeobox associ 51.6 42 0.00092 20.8 4.2 27 15-41 8-34 (45)
78 PF12998 ING: Inhibitor of gro 51.3 68 0.0015 21.0 6.9 70 10-79 17-88 (105)
79 PF06156 DUF972: Protein of un 50.7 34 0.00074 24.5 4.2 17 81-97 41-57 (107)
80 KOG0982|consensus 50.5 44 0.00094 30.4 5.7 51 22-72 300-356 (502)
81 TIGR02168 SMC_prok_B chromosom 50.2 1.6E+02 0.0035 26.4 9.0 24 11-34 809-832 (1179)
82 TIGR02894 DNA_bind_RsfA transc 49.9 1.2E+02 0.0027 23.7 7.5 36 56-91 112-147 (161)
83 KOG1937|consensus 49.0 1.2E+02 0.0026 27.9 8.1 68 7-79 250-317 (521)
84 PF07200 Mod_r: Modifier of ru 49.0 83 0.0018 22.4 6.0 21 77-97 70-90 (150)
85 PF07716 bZIP_2: Basic region 48.8 39 0.00085 20.7 3.8 28 55-82 25-52 (54)
86 smart00340 HALZ homeobox assoc 48.6 28 0.0006 22.3 3.1 20 21-40 7-26 (44)
87 TIGR02169 SMC_prok_A chromosom 48.6 1.8E+02 0.0039 26.3 9.2 21 61-81 454-474 (1164)
88 TIGR00219 mreC rod shape-deter 48.3 48 0.001 26.9 5.2 15 27-41 67-81 (283)
89 PF01486 K-box: K-box region; 47.7 38 0.00082 23.0 3.9 26 16-41 72-97 (100)
90 PRK00888 ftsB cell division pr 47.1 51 0.0011 23.2 4.6 30 13-42 28-57 (105)
91 TIGR02449 conserved hypothetic 46.7 48 0.001 22.3 4.2 31 14-44 2-32 (65)
92 COG1579 Zn-ribbon protein, pos 46.5 1.6E+02 0.0035 24.1 8.8 95 7-108 91-195 (239)
93 PF10224 DUF2205: Predicted co 46.5 60 0.0013 22.5 4.8 24 9-39 27-50 (80)
94 KOG3650|consensus 46.3 16 0.00035 27.4 2.0 21 22-42 73-93 (120)
95 PF08946 Osmo_CC: Osmosensory 46.1 34 0.00073 22.0 3.2 22 56-77 20-41 (46)
96 smart00787 Spc7 Spc7 kinetocho 45.8 96 0.0021 25.8 6.7 71 11-81 178-258 (312)
97 PRK06835 DNA replication prote 45.2 56 0.0012 27.0 5.2 50 28-77 38-87 (329)
98 PRK03947 prefoldin subunit alp 45.2 1.1E+02 0.0023 21.6 6.7 48 9-71 91-138 (140)
99 PF10498 IFT57: Intra-flagella 44.8 1.8E+02 0.0038 24.9 8.2 79 5-83 273-356 (359)
100 PRK00846 hypothetical protein; 44.5 1E+02 0.0022 21.2 6.8 25 57-81 29-53 (77)
101 COG5158 SEC1 Proteins involved 44.4 1E+02 0.0022 28.4 7.1 70 19-97 289-363 (582)
102 cd00890 Prefoldin Prefoldin is 43.9 1E+02 0.0022 20.9 5.8 30 10-39 85-114 (129)
103 PF05529 Bap31: B-cell recepto 43.5 1.3E+02 0.0029 22.3 6.6 59 19-77 118-183 (192)
104 PF05377 FlaC_arch: Flagella a 43.0 92 0.002 20.5 5.0 22 57-78 16-37 (55)
105 PRK10361 DNA recombination pro 42.9 1.9E+02 0.0042 25.9 8.5 66 14-83 55-120 (475)
106 PF10883 DUF2681: Protein of u 42.8 44 0.00095 23.6 3.7 23 19-41 23-45 (87)
107 KOG3990|consensus 42.8 1.2E+02 0.0026 26.0 6.9 20 11-30 224-243 (305)
108 KOG1853|consensus 42.2 93 0.002 26.9 6.2 67 20-86 53-122 (333)
109 PF10174 Cast: RIM-binding pro 42.2 1.5E+02 0.0032 28.1 8.0 74 9-82 518-596 (775)
110 PF10359 Fmp27_WPPW: RNA pol I 41.9 98 0.0021 26.8 6.4 25 59-83 197-221 (475)
111 PF09744 Jnk-SapK_ap_N: JNK_SA 41.9 1.2E+02 0.0026 23.1 6.2 32 13-44 37-68 (158)
112 PF08317 Spc7: Spc7 kinetochor 41.9 1.9E+02 0.0042 23.6 8.2 26 54-79 236-261 (325)
113 PF03980 Nnf1: Nnf1 ; InterPr 41.5 93 0.002 21.2 5.1 36 3-39 65-100 (109)
114 PF12240 Angiomotin_C: Angiomo 41.5 1.9E+02 0.0042 23.5 8.2 54 13-66 14-68 (205)
115 PRK00888 ftsB cell division pr 40.8 60 0.0013 22.9 4.2 30 68-97 33-62 (105)
116 PF00038 Filament: Intermediat 40.5 1.8E+02 0.0038 22.8 9.1 24 15-38 219-242 (312)
117 PF14282 FlxA: FlxA-like prote 40.2 1.3E+02 0.0028 21.1 6.3 23 19-41 19-41 (106)
118 PF05769 DUF837: Protein of un 40.2 1.7E+02 0.0037 22.6 7.5 23 10-32 22-44 (181)
119 PF04977 DivIC: Septum formati 40.0 92 0.002 19.3 4.8 30 12-41 17-46 (80)
120 TIGR02978 phageshock_pspC phag 39.8 47 0.001 24.4 3.6 24 10-33 82-105 (121)
121 TIGR02209 ftsL_broad cell divi 39.3 71 0.0015 20.5 4.0 16 23-38 28-43 (85)
122 PF03993 DUF349: Domain of Unk 39.2 95 0.0021 19.3 6.7 59 10-70 7-65 (77)
123 PRK09458 pspB phage shock prot 39.2 47 0.001 23.1 3.3 22 12-33 42-63 (75)
124 KOG0161|consensus 39.1 1.5E+02 0.0033 31.0 8.0 80 10-97 1651-1730(1930)
125 KOG0999|consensus 39.0 2.5E+02 0.0054 26.8 8.8 76 10-88 154-231 (772)
126 PF15254 CCDC14: Coiled-coil d 39.0 1.7E+02 0.0037 28.4 7.8 60 12-74 387-453 (861)
127 PRK13169 DNA replication intia 38.9 1.1E+02 0.0024 22.2 5.4 36 62-97 22-57 (110)
128 TIGR00219 mreC rod shape-deter 38.7 54 0.0012 26.6 4.1 34 56-92 74-107 (283)
129 PF04899 MbeD_MobD: MbeD/MobD 38.7 1.2E+02 0.0027 20.4 6.5 26 15-40 24-49 (70)
130 PF11577 NEMO: NF-kappa-B esse 38.6 84 0.0018 21.1 4.4 26 9-34 21-46 (68)
131 PF14197 Cep57_CLD_2: Centroso 38.3 55 0.0012 21.8 3.5 39 59-97 23-61 (69)
132 PRK08871 flgK flagellar hook-a 38.1 2.4E+02 0.0052 25.7 8.4 80 8-100 133-213 (626)
133 PRK04778 septation ring format 38.0 2.8E+02 0.0061 24.4 9.5 85 11-95 302-388 (569)
134 PF09789 DUF2353: Uncharacteri 37.8 2.4E+02 0.0051 24.1 7.9 82 7-88 67-159 (319)
135 PRK10227 DNA-binding transcrip 37.3 48 0.001 24.0 3.3 25 56-80 87-111 (135)
136 PRK13922 rod shape-determining 37.2 90 0.002 24.4 5.0 14 66-79 97-110 (276)
137 PF09726 Macoilin: Transmembra 36.8 2.5E+02 0.0055 26.1 8.5 56 9-79 457-512 (697)
138 TIGR02976 phageshock_pspB phag 36.7 50 0.0011 22.5 3.1 23 11-33 41-63 (75)
139 PF14645 Chibby: Chibby family 36.6 1.3E+02 0.0028 21.8 5.4 21 22-42 74-94 (116)
140 cd07429 Cby_like Chibby, a nuc 36.5 43 0.00093 24.5 2.9 20 22-41 75-94 (108)
141 PF13543 KSR1-SAM: SAM like do 36.4 68 0.0015 24.0 4.1 43 21-67 1-43 (129)
142 PF04375 HemX: HemX; InterPro 36.3 2.6E+02 0.0056 23.4 9.4 23 17-39 51-73 (372)
143 PF04102 SlyX: SlyX; InterPro 36.1 1.2E+02 0.0027 19.7 6.7 44 24-82 2-45 (69)
144 KOG0766|consensus 36.0 27 0.00058 29.7 2.0 14 13-26 34-47 (297)
145 KOG0709|consensus 35.7 39 0.00084 30.5 3.1 25 73-97 276-300 (472)
146 PF04912 Dynamitin: Dynamitin 35.7 1E+02 0.0022 25.7 5.4 30 15-44 90-119 (388)
147 TIGR02263 benz_CoA_red_C benzo 35.6 81 0.0018 26.2 4.8 18 80-97 169-186 (380)
148 PF13863 DUF4200: Domain of un 34.8 1.5E+02 0.0032 20.2 7.4 74 8-81 14-107 (126)
149 PRK13922 rod shape-determining 34.7 80 0.0017 24.6 4.4 29 60-92 81-109 (276)
150 KOG0818|consensus 34.7 52 0.0011 30.7 3.8 44 54-97 422-465 (669)
151 TIGR03191 benz_CoA_bzdO benzoy 34.0 64 0.0014 27.6 4.1 39 56-97 163-206 (430)
152 PF12325 TMF_TATA_bd: TATA ele 34.0 1.4E+02 0.0031 21.8 5.4 31 55-85 30-60 (120)
153 PF06667 PspB: Phage shock pro 33.7 60 0.0013 22.3 3.1 23 11-33 41-63 (75)
154 PF07295 DUF1451: Protein of u 33.3 67 0.0014 24.2 3.6 39 60-99 45-85 (146)
155 TIGR01837 PHA_granule_1 poly(h 33.2 59 0.0013 23.2 3.2 25 52-76 93-117 (118)
156 KOG4643|consensus 33.1 2.3E+02 0.0049 28.6 7.8 60 7-74 273-334 (1195)
157 PF05791 Bacillus_HBL: Bacillu 32.9 1.7E+02 0.0036 22.2 5.8 68 3-70 88-178 (184)
158 PF15136 UPF0449: Uncharacteri 32.8 91 0.002 22.6 4.1 25 10-34 69-93 (97)
159 PRK00295 hypothetical protein; 32.8 1.5E+02 0.0032 19.5 6.7 18 17-34 3-20 (68)
160 COG3937 Uncharacterized conser 32.6 53 0.0012 24.3 2.9 28 52-79 80-107 (108)
161 PF14662 CCDC155: Coiled-coil 32.5 2.7E+02 0.0058 22.5 7.9 33 8-41 57-89 (193)
162 PRK10803 tol-pal system protei 32.5 1.6E+02 0.0035 23.5 5.9 42 55-96 61-102 (263)
163 cd07597 BAR_SNX8 The Bin/Amphi 32.4 2.5E+02 0.0054 22.1 8.3 53 5-65 123-183 (246)
164 PRK12793 flaF flagellar biosyn 32.2 24 0.00053 25.7 1.1 11 83-93 50-60 (115)
165 PF11365 DUF3166: Protein of u 31.9 1.9E+02 0.0042 20.7 8.5 35 10-44 6-40 (96)
166 PRK10697 DNA-binding transcrip 31.9 75 0.0016 23.4 3.6 23 11-33 80-102 (118)
167 PF09728 Taxilin: Myosin-like 31.7 1.8E+02 0.0038 24.1 6.1 63 13-76 238-300 (309)
168 PRK10803 tol-pal system protei 31.6 1.4E+02 0.003 23.9 5.3 18 23-40 58-75 (263)
169 PF12718 Tropomyosin_1: Tropom 31.5 2.1E+02 0.0046 21.0 9.5 39 55-97 49-87 (143)
170 TIGR02169 SMC_prok_A chromosom 31.5 4E+02 0.0086 24.2 8.9 20 75-94 454-473 (1164)
171 PF06034 DUF919: Nucleopolyhed 30.9 98 0.0021 20.7 3.7 32 58-97 4-35 (62)
172 PRK02793 phi X174 lysis protei 30.7 1.6E+02 0.0036 19.5 7.3 17 17-33 6-22 (72)
173 KOG4797|consensus 30.5 65 0.0014 24.4 3.1 24 53-76 65-88 (123)
174 PF05597 Phasin: Poly(hydroxya 30.0 71 0.0015 23.7 3.2 25 52-76 106-130 (132)
175 PF15456 Uds1: Up-regulated Du 29.9 2.3E+02 0.0049 20.8 8.1 70 9-79 26-105 (124)
176 PF11853 DUF3373: Protein of u 29.5 56 0.0012 29.4 3.0 25 54-79 24-48 (489)
177 KOG0977|consensus 29.5 2E+02 0.0043 26.4 6.5 76 22-97 109-190 (546)
178 KOG0483|consensus 29.3 65 0.0014 25.6 3.1 51 20-85 113-164 (198)
179 PF04111 APG6: Autophagy prote 29.2 3.3E+02 0.0071 22.5 8.6 21 21-41 45-65 (314)
180 PRK14127 cell division protein 28.8 1.4E+02 0.003 21.7 4.5 15 83-97 85-99 (109)
181 COG1196 Smc Chromosome segrega 28.8 5.3E+02 0.012 24.8 9.6 15 22-36 824-838 (1163)
182 PRK04325 hypothetical protein; 28.8 1.8E+02 0.0039 19.4 6.6 46 22-82 5-50 (74)
183 PF10186 Atg14: UV radiation r 28.7 2.6E+02 0.0056 21.1 8.5 29 5-33 20-48 (302)
184 PF10186 Atg14: UV radiation r 28.7 2.6E+02 0.0056 21.1 10.1 31 11-41 62-92 (302)
185 PF11559 ADIP: Afadin- and alp 28.5 2.2E+02 0.0048 20.3 8.1 35 7-41 68-102 (151)
186 COG4942 Membrane-bound metallo 28.4 4.3E+02 0.0093 23.6 8.6 59 12-78 52-110 (420)
187 PF07061 Swi5: Swi5; InterPro 28.3 1.9E+02 0.0042 19.8 4.9 26 59-84 4-29 (83)
188 PF10473 CENP-F_leu_zip: Leuci 28.2 2.6E+02 0.0057 21.0 7.8 73 16-89 49-121 (140)
189 TIGR00012 L29 ribosomal protei 28.1 1.6E+02 0.0034 18.4 5.1 42 22-67 8-49 (55)
190 PF07309 FlaF: Flagellar prote 28.1 31 0.00067 24.7 1.0 14 83-96 49-62 (113)
191 PF04380 BMFP: Membrane fusoge 28.1 1.1E+02 0.0025 20.4 3.7 27 7-33 52-78 (79)
192 COG1792 MreC Cell shape-determ 28.0 3.3E+02 0.0072 22.2 8.0 58 8-77 45-105 (284)
193 PRK12794 flaF flagellar biosyn 27.8 32 0.0007 25.1 1.1 12 83-94 52-63 (122)
194 PRK00306 50S ribosomal protein 27.6 1.7E+02 0.0038 18.8 5.2 42 22-67 12-53 (66)
195 PF04999 FtsL: Cell division p 27.5 1.9E+02 0.0041 19.2 6.3 28 20-47 43-70 (97)
196 PF08826 DMPK_coil: DMPK coile 27.4 1.9E+02 0.0041 19.1 7.3 24 15-38 21-44 (61)
197 PF13815 Dzip-like_N: Iguana/D 27.3 2.2E+02 0.0049 20.0 5.6 7 28-34 82-88 (118)
198 TIGR03190 benz_CoA_bzdN benzoy 27.1 1.4E+02 0.0031 24.7 4.9 42 55-97 138-182 (377)
199 PF04728 LPP: Lipoprotein leuc 27.0 1.5E+02 0.0032 19.6 4.0 26 56-81 4-29 (56)
200 KOG4763|consensus 27.0 1.3E+02 0.0029 21.1 4.0 34 13-46 15-48 (77)
201 PF09744 Jnk-SapK_ap_N: JNK_SA 26.9 2.9E+02 0.0062 21.1 7.8 28 15-42 85-112 (158)
202 KOG0837|consensus 26.8 3.2E+02 0.0069 23.3 6.9 49 20-79 220-269 (279)
203 PF05622 HOOK: HOOK protein; 26.8 21 0.00046 32.0 0.0 75 14-88 334-424 (713)
204 KOG0161|consensus 26.7 3.1E+02 0.0068 28.9 7.9 81 12-92 985-1085(1930)
205 PRK11519 tyrosine kinase; Prov 26.7 2.8E+02 0.0061 25.1 6.9 35 9-43 264-298 (719)
206 PF05308 Mito_fiss_reg: Mitoch 26.5 54 0.0012 26.7 2.3 19 26-44 122-140 (253)
207 PF05667 DUF812: Protein of un 26.3 1.7E+02 0.0037 26.7 5.5 45 53-97 326-370 (594)
208 PF05266 DUF724: Protein of un 26.2 3.1E+02 0.0068 21.3 7.9 42 56-97 125-166 (190)
209 PF12958 DUF3847: Protein of u 25.9 1.4E+02 0.003 21.0 4.0 32 65-96 4-35 (86)
210 cd00584 Prefoldin_alpha Prefol 25.8 2.3E+02 0.005 19.6 6.2 31 9-39 84-114 (129)
211 PF12808 Mto2_bdg: Micro-tubul 25.8 70 0.0015 20.7 2.3 20 24-43 27-46 (52)
212 KOG0804|consensus 25.5 1.6E+02 0.0035 26.9 5.1 28 17-44 387-414 (493)
213 PRK11415 hypothetical protein; 25.3 2E+02 0.0042 19.1 4.4 46 13-79 18-63 (74)
214 PF04508 Pox_A_type_inc: Viral 25.1 83 0.0018 17.5 2.2 15 56-70 2-16 (23)
215 PF15619 Lebercilin: Ciliary p 25.1 3.3E+02 0.0072 21.2 8.1 72 9-80 72-150 (194)
216 KOG4302|consensus 25.1 1.2E+02 0.0027 28.3 4.5 40 54-93 225-264 (660)
217 cd07666 BAR_SNX7 The Bin/Amphi 25.0 2.1E+02 0.0045 23.2 5.3 44 16-68 154-197 (243)
218 KOG4367|consensus 25.0 1.9E+02 0.0041 27.0 5.6 56 24-81 281-338 (699)
219 PF12651 RHH_3: Ribbon-helix-h 24.6 62 0.0014 19.5 1.8 20 85-104 10-29 (44)
220 TIGR00606 rad50 rad50. This fa 24.6 6.7E+02 0.014 24.5 9.4 79 12-95 186-264 (1311)
221 KOG0709|consensus 23.8 45 0.00098 30.1 1.5 44 53-96 270-313 (472)
222 COG3416 Uncharacterized protei 23.7 1.2E+02 0.0026 25.2 3.7 23 12-34 55-77 (233)
223 PRK02119 hypothetical protein; 23.6 2.3E+02 0.005 18.8 7.6 22 16-37 6-27 (73)
224 TIGR01010 BexC_CtrB_KpsE polys 23.6 3E+02 0.0065 22.2 6.0 29 13-41 171-199 (362)
225 KOG4687|consensus 23.4 2.7E+02 0.0059 24.5 6.0 29 16-45 48-76 (389)
226 PRK11032 hypothetical protein; 23.3 88 0.0019 24.1 2.8 39 60-99 55-97 (160)
227 PF06698 DUF1192: Protein of u 22.8 1E+02 0.0022 20.4 2.6 22 22-43 24-45 (59)
228 PF10234 Cluap1: Clusterin-ass 22.6 4.5E+02 0.0098 21.8 7.5 31 8-38 165-195 (267)
229 KOG3501|consensus 22.6 1.1E+02 0.0023 23.1 3.0 27 56-82 75-101 (114)
230 PF07989 Microtub_assoc: Micro 22.1 2.6E+02 0.0055 18.8 6.6 19 24-42 5-23 (75)
231 KOG4674|consensus 22.0 5.1E+02 0.011 27.4 8.3 82 17-99 57-158 (1822)
232 PTZ00454 26S protease regulato 21.9 1.6E+02 0.0034 25.1 4.3 42 56-97 16-57 (398)
233 PF09949 DUF2183: Uncharacteri 21.9 46 0.001 23.4 0.9 32 77-108 1-32 (100)
234 PRK05683 flgK flagellar hook-a 21.6 6.5E+02 0.014 23.3 8.4 76 9-97 131-211 (676)
235 PF06810 Phage_GP20: Phage min 21.6 1.3E+02 0.0029 22.4 3.4 48 25-72 19-68 (155)
236 PF00992 Troponin: Troponin; 21.6 1.5E+02 0.0032 21.8 3.6 25 14-38 45-69 (132)
237 PRK06975 bifunctional uroporph 21.6 5E+02 0.011 23.6 7.5 35 54-89 384-418 (656)
238 PRK09973 putative outer membra 21.5 1.6E+02 0.0036 20.8 3.6 28 55-82 24-51 (85)
239 PF07303 Occludin_ELL: Occludi 21.4 1.4E+02 0.0029 21.1 3.2 20 12-31 73-92 (101)
240 COG1730 GIM5 Predicted prefold 21.3 3.7E+02 0.0081 20.3 6.7 28 11-38 93-120 (145)
241 PF00831 Ribosomal_L29: Riboso 21.2 2.3E+02 0.0049 17.8 5.2 43 22-68 10-52 (58)
242 PF02996 Prefoldin: Prefoldin 21.2 2.7E+02 0.0058 18.7 6.2 29 10-38 75-103 (120)
243 PF02646 RmuC: RmuC family; I 21.0 4.6E+02 0.0099 21.3 7.8 28 9-36 3-30 (304)
244 PHA02562 46 endonuclease subun 21.0 5.1E+02 0.011 21.8 8.6 63 17-79 172-237 (562)
245 PF08317 Spc7: Spc7 kinetochor 20.8 4.7E+02 0.01 21.3 9.0 45 53-97 221-265 (325)
246 PF04521 Viral_P18: ssRNA posi 20.8 1.6E+02 0.0035 22.2 3.6 28 55-82 72-99 (120)
247 PF12711 Kinesin-relat_1: Kine 20.7 1.6E+02 0.0035 20.7 3.5 41 27-70 45-85 (86)
248 PRK04406 hypothetical protein; 20.7 2.8E+02 0.006 18.6 7.2 25 57-81 27-51 (75)
249 PF15384 DUF4610: Domain of un 20.7 1.1E+02 0.0024 24.7 3.0 27 9-35 115-141 (197)
250 PRK11637 AmiB activator; Provi 20.5 4.8E+02 0.01 21.8 6.8 19 17-35 45-63 (428)
251 PF15278 Sec3_C_2: Sec3 exocys 20.5 1.4E+02 0.0029 21.4 3.0 19 58-76 28-46 (86)
252 TIGR03628 arch_S11P archaeal r 20.5 92 0.002 22.8 2.3 20 5-24 43-62 (114)
253 COG5502 Uncharacterized conser 20.4 1E+02 0.0022 23.6 2.5 17 5-21 27-43 (135)
254 PLN02678 seryl-tRNA synthetase 20.3 3E+02 0.0066 24.2 5.8 50 55-105 71-120 (448)
255 PF09755 DUF2046: Uncharacteri 20.3 4E+02 0.0087 22.9 6.3 21 56-76 179-199 (310)
256 KOG1655|consensus 20.3 5E+02 0.011 21.5 8.1 68 9-77 16-85 (218)
257 PF12507 HCMV_UL139: Human Cyt 20.3 3.9E+02 0.0084 20.2 5.8 61 8-69 19-79 (121)
258 TIGR03007 pepcterm_ChnLen poly 20.3 5.2E+02 0.011 21.7 9.1 33 11-43 160-192 (498)
259 PLN03230 acetyl-coenzyme A car 20.1 2.7E+02 0.0058 25.0 5.4 43 23-69 77-119 (431)
260 TIGR02047 CadR-PbrR Cd(II)/Pb( 20.1 1.6E+02 0.0034 20.8 3.4 22 57-78 88-109 (127)
261 PF05384 DegS: Sensor protein 20.1 3.8E+02 0.0082 20.5 5.6 37 8-44 87-123 (159)
No 1
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.84 E-value=0.095 Score=44.04 Aligned_cols=72 Identities=32% Similarity=0.359 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhccc-----------------------cc-cc-------CCchhhHHHHHHHHHHHHHh
Q psy524 22 QLLQLRLSNLEEENLKLRIDKKKSE-----------------------TN-EK-------EPKESLVSKLNEEIEMLSQQ 70 (111)
Q Consensus 22 ~~LQ~Rl~~lEEEN~~LR~~~~~~~-----------------------~~-~~-------~~~~sd~~~L~ekV~EL~rQ 70 (111)
..||+++-.||+||..||....... .+ .+ .-++.+....+++|.-|..|
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsq 242 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQ 242 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999876411 00 00 14556667778888889999
Q ss_pred HHHHhhhHhHhhhchHHHHHHHh
Q psy524 71 KTQLTHHIFMVATENKQLWTKLS 93 (111)
Q Consensus 71 K~QL~~hI~MVa~ENRqLWsrLS 93 (111)
-..|.+.+.+.+.||-.|=.+|.
T Consensus 243 ivdlQ~r~k~~~~EnEeL~q~L~ 265 (306)
T PF04849_consen 243 IVDLQQRCKQLAAENEELQQHLQ 265 (306)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999887775
No 2
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=94.40 E-value=0.052 Score=36.42 Aligned_cols=43 Identities=26% Similarity=0.304 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccc
Q psy524 7 NCALQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNE 49 (111)
Q Consensus 7 ~yAL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~ 49 (111)
.||.+--..++|+|-..|+.|.+.+|.||-.||..++.+.-++
T Consensus 9 m~AVrEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~~pe~l~q 51 (59)
T PF01166_consen 9 MYAVREEVEVLKEQIAELEERNSQLEEENNLLKQNASPEQLAQ 51 (59)
T ss_dssp GGT-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5888888999999999999999999999999999887755443
No 3
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=91.12 E-value=2.6 Score=29.70 Aligned_cols=63 Identities=22% Similarity=0.257 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHhHh
Q psy524 6 SNCALQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIFMV 81 (111)
Q Consensus 6 s~yAL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~MV 81 (111)
+.||-...+..+.+|-....+|++.+|.+-..| |...|+..|+-.+.|+.-.=.-|..+|.=|
T Consensus 29 ~~~a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~L-------------Pt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 29 RTYAKREDIEKLEERLDEHDRRLQALETKLEHL-------------PTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------------CCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456777778888888888899999999988877 566777777777777776666666665544
No 4
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.70 E-value=2.3 Score=33.50 Aligned_cols=77 Identities=10% Similarity=0.154 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHHHHHhhh
Q psy524 16 TMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIFMVATENKQLWTKLSML 95 (111)
Q Consensus 16 tmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWsrLS~L 95 (111)
.+++|-..||+.++.++.+...++.+-.. ....-...+..+...+.+|..+..+|..++...-+||+.|=..+..+
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~~----~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWNQ----RTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777778888888887776666543221 00112344555666777777888888777777777776665444444
Q ss_pred h
Q psy524 96 T 96 (111)
Q Consensus 96 ~ 96 (111)
.
T Consensus 166 ~ 166 (206)
T PRK10884 166 Q 166 (206)
T ss_pred H
Confidence 3
No 5
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=89.57 E-value=2.2 Score=26.98 Aligned_cols=40 Identities=28% Similarity=0.383 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHh
Q psy524 16 TMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQ 70 (111)
Q Consensus 16 tmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQ 70 (111)
--|+....|+.++..|+.+|..|+. ++..|...+..|..+
T Consensus 23 RKk~~~~~Le~~~~~L~~en~~L~~---------------~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 23 RKKQYIEELEEKVEELESENEELKK---------------ELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHhh
Confidence 3456678888899999988888853 455566666665543
No 6
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=88.80 E-value=6.1 Score=30.94 Aligned_cols=79 Identities=27% Similarity=0.306 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccc---c----CCchhhHHHHHHHHHHHHHhHHHHhhhHhHhhhch
Q psy524 13 ALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNE---K----EPKESLVSKLNEEIEMLSQQKTQLTHHIFMVATEN 85 (111)
Q Consensus 13 ALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~---~----~~~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~EN 85 (111)
-|+.|.+|=-..=.||-.||.+|..|...-....+.. . ..-..++..|+.+|+.++.+|.+|.-++.-.-.+-
T Consensus 5 eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~ 84 (312)
T PF00038_consen 5 ELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEEL 84 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHH
Confidence 4678888888888899999999999987765422221 1 13456788899999999999999998887655555
Q ss_pred HHHHHH
Q psy524 86 KQLWTK 91 (111)
Q Consensus 86 RqLWsr 91 (111)
..+=.+
T Consensus 85 ~~~r~k 90 (312)
T PF00038_consen 85 EDLRRK 90 (312)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
No 7
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=88.14 E-value=2.3 Score=28.44 Aligned_cols=61 Identities=28% Similarity=0.309 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHh
Q psy524 9 ALQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQ 70 (111)
Q Consensus 9 AL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQ 70 (111)
+|.....++++|=..+.+.+++.+.+|..|+..-......- ...-.+...|+++++.|.++
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l-~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQL-GDAYEENNKLKEENEALRKE 62 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999999999987643322111 12345677788888887776
No 8
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=87.89 E-value=4.2 Score=29.16 Aligned_cols=73 Identities=26% Similarity=0.293 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccc---cCCchhhHHHHHHHHHHHHHhHHHHhhhHhHh
Q psy524 9 ALQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNE---KEPKESLVSKLNEEIEMLSQQKTQLTHHIFMV 81 (111)
Q Consensus 9 AL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~---~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~MV 81 (111)
+.--+|+++|+....++..+..+..+-...+..-......= ...=..++..++.++++|+.|..=|-.||-.+
T Consensus 56 ~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 56 EDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44557899999999999999999999888776654322111 11234577888889999999988888877543
No 9
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=87.75 E-value=5.3 Score=36.16 Aligned_cols=89 Identities=24% Similarity=0.255 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHhhhhhhc-cccccc--CCchhhHHHHHHHHHHHHHhHHHHhhhH
Q psy524 9 ALQIALQTMKDRCQLLQLRLSNLEE-------ENLKLRIDKKK-SETNEK--EPKESLVSKLNEEIEMLSQQKTQLTHHI 78 (111)
Q Consensus 9 AL~vALqtmkeRC~~LQ~Rl~~lEE-------EN~~LR~~~~~-~~~~~~--~~~~sd~~~L~ekV~EL~rQK~QL~~hI 78 (111)
+|+.+....|+|++.|+.++.-+|+ |++.|...-++ ...+.+ +...-++..|++.+.-+++.|+||.+--
T Consensus 361 ~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~Ek 440 (546)
T PF07888_consen 361 ALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEK 440 (546)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555567789999999999998887 44444444433 112211 2334456667777777778888877776
Q ss_pred hHhhhchHHHHHHHhhhhh
Q psy524 79 FMVATENKQLWTKLSMLTE 97 (111)
Q Consensus 79 ~MVa~ENRqLWsrLS~L~k 97 (111)
.+..-.=++|=-||-+++.
T Consensus 441 QeL~~yi~~Le~r~~~~~~ 459 (546)
T PF07888_consen 441 QELLEYIERLEQRLDKVAD 459 (546)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 6666666777777766654
No 10
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=87.40 E-value=4.6 Score=29.63 Aligned_cols=60 Identities=22% Similarity=0.308 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHh
Q psy524 7 NCALQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIF 79 (111)
Q Consensus 7 ~yAL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~ 79 (111)
..++...+..+++.+..|+..+..++.|--.|+.. ++ ...|+.+|.+|..+..+|...+.
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~-------~t------~~el~~~i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSE-------PT------NEELREEIEELEEEIEELEEKLE 133 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CC------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555554444333 21 12356666666666655555443
No 11
>KOG3119|consensus
Probab=87.34 E-value=2.4 Score=34.17 Aligned_cols=53 Identities=30% Similarity=0.369 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHH
Q psy524 7 NCALQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQL 74 (111)
Q Consensus 7 ~yAL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL 74 (111)
|-|+.-....=|.+=.+.+.|+.-||.||.+||.. |+.|+.++.-|..-+.|.
T Consensus 203 N~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~---------------v~~l~~el~~~~~~~~~~ 255 (269)
T KOG3119|consen 203 NEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQ---------------VEQLKKELATLRRLFLQL 255 (269)
T ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHhh
Confidence 56777777777777788899999999999998653 445555555555555543
No 12
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=86.21 E-value=10 Score=27.22 Aligned_cols=76 Identities=20% Similarity=0.158 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHhHhhhchH
Q psy524 7 NCALQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIFMVATENK 86 (111)
Q Consensus 7 ~yAL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENR 86 (111)
.|.|...-+-=.+....|...+..++-++.+| ..++..|+++++++.+.-........-+..+++
T Consensus 40 i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l---------------~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~ 104 (151)
T PF11559_consen 40 IYDLLQQRDRDMEQREDLSDKLRRLRSDIERL---------------QNDVERLKEQLEELERELASAEEKERQLQKQLK 104 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555566667777777777777766 345666667777777666666666666666666
Q ss_pred HHHHHHhhhhh
Q psy524 87 QLWTKLSMLTE 97 (111)
Q Consensus 87 qLWsrLS~L~k 97 (111)
.+...+-....
T Consensus 105 ~~~~~~k~~ke 115 (151)
T PF11559_consen 105 SLEAKLKQEKE 115 (151)
T ss_pred HHHHHHHHHHH
Confidence 66666655444
No 13
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=86.02 E-value=3.2 Score=31.34 Aligned_cols=81 Identities=23% Similarity=0.256 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHHH
Q psy524 11 QIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIFMVATENKQLWT 90 (111)
Q Consensus 11 ~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWs 90 (111)
-..++.++......+.+|+.++.++-.|+......... ...+...++.|+..+..|+=+-..+++.+.-+-.||+.|=.
T Consensus 101 ~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~-l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 101 NDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEE-LKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666666666666665554431111 11345667778888888888888899999999999999877
Q ss_pred HH
Q psy524 91 KL 92 (111)
Q Consensus 91 rL 92 (111)
|+
T Consensus 180 Rw 181 (194)
T PF08614_consen 180 RW 181 (194)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 14
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=84.82 E-value=6.4 Score=36.63 Aligned_cols=53 Identities=28% Similarity=0.373 Sum_probs=37.3
Q ss_pred HHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHhHhhhc--hHH
Q psy524 27 RLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIFMVATE--NKQ 87 (111)
Q Consensus 27 Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~E--NRq 87 (111)
|+..||.|...++... ....+.+...+.....++.+=.||-|||-||-+| ||.
T Consensus 420 ri~~LE~ELr~l~~~A--------~E~q~~LnsAQDELvtfSEeLAqLYHHVC~cNgeTPnRV 474 (717)
T PF09730_consen 420 RISELEKELRALSKLA--------GESQGSLNSAQDELVTFSEELAQLYHHVCMCNGETPNRV 474 (717)
T ss_pred HHHHHHHHHHHHHHHH--------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCccH
Confidence 5555555544443321 1345667888999999999999999999999876 554
No 15
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=84.48 E-value=17 Score=28.27 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHhHh
Q psy524 22 QLLQLRLSNLEEENLKL 38 (111)
Q Consensus 22 ~~LQ~Rl~~lEEEN~~L 38 (111)
.+.|.|++.+.+|-..|
T Consensus 38 ~~sQ~~id~~~~e~~~L 54 (251)
T PF11932_consen 38 QQSQKRIDQWDDEKQEL 54 (251)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555554444
No 16
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=84.07 E-value=8.9 Score=29.48 Aligned_cols=65 Identities=20% Similarity=0.245 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHh
Q psy524 13 ALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIF 79 (111)
Q Consensus 13 ALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~ 79 (111)
|.+.++.+|..|+..+..++++-..|+..-.....+. ..+.+-..+-+++.+|.++..+|...+.
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r--~~~~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 63 AKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGR--EESEEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777777777777766665544322222 1123444455555555555555554444
No 17
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=83.82 E-value=10 Score=27.23 Aligned_cols=47 Identities=34% Similarity=0.439 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHH
Q psy524 8 CALQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQ 69 (111)
Q Consensus 8 yAL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~r 69 (111)
-.+.--+..|=+--..|...+..|.|||.+||+. ...||+.+.++..
T Consensus 11 ~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~E---------------N~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 11 DQLEQQLGQLLEELEELKKQLQELLEENARLRIE---------------NEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHhc
Confidence 3444555666666677888899999999999875 4567777777655
No 18
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=82.78 E-value=7.4 Score=31.16 Aligned_cols=104 Identities=19% Similarity=0.169 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhc------ccc---cccCCchhhHHHHHHHHHHHHHhHHHHhh
Q psy524 6 SNCALQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKK------SET---NEKEPKESLVSKLNEEIEMLSQQKTQLTH 76 (111)
Q Consensus 6 s~yAL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~------~~~---~~~~~~~sd~~~L~ekV~EL~rQK~QL~~ 76 (111)
+.--|+..=+.+++--..||+-+..+|+.|-+|-...+. +.+ ...+.-..++..|+.-+.+|..++-+|..
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~a 88 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLA 88 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888899999999999999999999999776543 111 11123346788888888888888888888
Q ss_pred hHhHhhhchHHHHHHHhhhhhhcCCCccccccc
Q psy524 77 HIFMVATENKQLWTKLSMLTEETNVPEQSINLV 109 (111)
Q Consensus 77 hI~MVa~ENRqLWsrLS~L~k~~n~~lg~~~~~ 109 (111)
+-.=-=-||..|-..+-.|-.+.++.++-+..+
T Consensus 89 q~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~l 121 (193)
T PF14662_consen 89 QARQLEKEQQSLVAEIETLQEENGKLLAERDGL 121 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhH
Confidence 877777888888777777776666555544433
No 19
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=81.69 E-value=17 Score=33.11 Aligned_cols=78 Identities=23% Similarity=0.275 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHH-HHHHHHHHHHHhHHHHhhhHhHhhhchHHHHHHH
Q psy524 14 LQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVS-KLNEEIEMLSQQKTQLTHHIFMVATENKQLWTKL 92 (111)
Q Consensus 14 LqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~-~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWsrL 92 (111)
+.||+++=.....||..||..-..|+..-.........+..|+++ .|+..+..|.+.+.-|..++.-..-+|.+| ++|
T Consensus 38 v~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~L-s~L 116 (617)
T PF15070_consen 38 VRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQL-SRL 116 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 456777777777777777777766665443311111123344554 799999999999999999887655555544 554
No 20
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=79.84 E-value=16 Score=32.72 Aligned_cols=31 Identities=29% Similarity=0.441 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhc
Q psy524 14 LQTMKDRCQLLQLRLSNLEEENLKLRIDKKK 44 (111)
Q Consensus 14 LqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~ 44 (111)
+.|+=.+-.++.+++..|+.+|-.|+.+..+
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~ 91 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENER 91 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666555443
No 21
>KOG4360|consensus
Probab=79.57 E-value=5.5 Score=36.56 Aligned_cols=25 Identities=40% Similarity=0.450 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhh
Q psy524 19 DRCQLLQLRLSNLEEENLKLRIDKK 43 (111)
Q Consensus 19 eRC~~LQ~Rl~~lEEEN~~LR~~~~ 43 (111)
+--+-||.+|-.+|+||.+||..+-
T Consensus 159 ~~~EaL~ekLk~~~een~~lr~k~~ 183 (596)
T KOG4360|consen 159 ELLEALQEKLKPLEEENTQLRSKAM 183 (596)
T ss_pred HHHHHHHhhcCChHHHHHHHHHHHH
Confidence 5567899999999999999999874
No 22
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=77.90 E-value=19 Score=32.77 Aligned_cols=37 Identities=14% Similarity=0.132 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhc
Q psy524 8 CALQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKK 44 (111)
Q Consensus 8 yAL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~ 44 (111)
.-|.-+...|++.|..|+.++..|+.+....+..+..
T Consensus 153 eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~ 189 (546)
T PF07888_consen 153 EELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQ 189 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777777777777766666655555443
No 23
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=77.77 E-value=18 Score=26.45 Aligned_cols=30 Identities=37% Similarity=0.503 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy524 10 LQIALQTMKDRCQLLQLRLSNLEEENLKLR 39 (111)
Q Consensus 10 L~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR 39 (111)
++--+..+.+++..++..+..+++....++
T Consensus 93 l~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 93 LQEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 334455566666666666666666666555
No 24
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=77.43 E-value=19 Score=24.24 Aligned_cols=52 Identities=27% Similarity=0.350 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHh
Q psy524 13 ALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIF 79 (111)
Q Consensus 13 ALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~ 79 (111)
=.+..=+.+..||.++..+.++|..|. ++...|++....|.....+-.+||.
T Consensus 12 ki~~aveti~~Lq~e~eeLke~n~~L~---------------~e~~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 12 KIQQAVETIALLQMENEELKEKNNELK---------------EENEELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH---------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667778888888888887774 3455666666666666665555554
No 25
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=76.71 E-value=26 Score=28.86 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh
Q psy524 5 TSNCALQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKK 43 (111)
Q Consensus 5 ~s~yAL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~ 43 (111)
....++..-++.++.--..|...|..+|.|...|...-.
T Consensus 43 ~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~ 81 (314)
T PF04111_consen 43 EDIEELEEELEKLEQEEEELLQELEELEKEREELDQELE 81 (314)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335667777888888888888888888888887765543
No 26
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=76.36 E-value=2.2 Score=26.50 Aligned_cols=27 Identities=30% Similarity=0.290 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy524 15 QTMKDRCQLLQLRLSNLEEENLKLRID 41 (111)
Q Consensus 15 qtmkeRC~~LQ~Rl~~lEEEN~~LR~~ 41 (111)
.++.-||..|..+++.|.-||+.||+.
T Consensus 17 s~l~~ki~~le~~~s~L~~en~~lR~~ 43 (46)
T PF07558_consen 17 SALSIKIQELENEVSKLLNENVNLREL 43 (46)
T ss_dssp -------------HHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHhHHHHHHHHHHHHHHH
Confidence 356779999999999999999999975
No 27
>KOG0971|consensus
Probab=76.34 E-value=11 Score=37.03 Aligned_cols=71 Identities=25% Similarity=0.361 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHhHhhhhhhc--cccccc--C--CchhhHHHH
Q psy524 9 ALQIALQTMKDRCQLLQLRLSN----------------------LEEENLKLRIDKKK--SETNEK--E--PKESLVSKL 60 (111)
Q Consensus 9 AL~vALqtmkeRC~~LQ~Rl~~----------------------lEEEN~~LR~~~~~--~~~~~~--~--~~~sd~~~L 60 (111)
-||.-+.++|||-..|..-|.+ +|.-|.+||..-.| |.++.. + --..+.+.+
T Consensus 329 sLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k 408 (1243)
T KOG0971|consen 329 SLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKK 408 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 3677788888888888877765 46678888888776 443332 1 123467788
Q ss_pred HHHHHHHHHhHHHHhhhHh
Q psy524 61 NEEIEMLSQQKTQLTHHIF 79 (111)
Q Consensus 61 ~ekV~EL~rQK~QL~~hI~ 79 (111)
++.+.||-++|+-|.+.|-
T Consensus 409 ~sE~~eL~r~kE~Lsr~~d 427 (1243)
T KOG0971|consen 409 NSELEELRRQKERLSRELD 427 (1243)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 8888899999888887763
No 28
>KOG4797|consensus
Probab=75.84 E-value=7.8 Score=29.27 Aligned_cols=36 Identities=28% Similarity=0.286 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q psy524 7 NCALQIALQTMKDRCQLLQLRLSNLEEENLKLRIDK 42 (111)
Q Consensus 7 ~yAL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~ 42 (111)
.||..--..++|+--..|..|.+.||.||--||...
T Consensus 62 mfAVREEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~ 97 (123)
T KOG4797|consen 62 MFAVREEVEVLKEQIRELEERNSALERENSLLKTLA 97 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 689999999999999999999999999999998763
No 29
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=75.42 E-value=13 Score=30.04 Aligned_cols=50 Identities=28% Similarity=0.341 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHhHhhhchHH
Q psy524 23 LLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIFMVATENKQ 87 (111)
Q Consensus 23 ~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRq 87 (111)
.+-.|...||+|+-.++ ..+..|+.+|+.|..-..+|-|.|..+..=++.
T Consensus 90 RFR~Rn~ELE~elr~~~---------------~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~~~ 139 (248)
T PF08172_consen 90 RFRQRNAELEEELRKQQ---------------QTISSLRREVESLRADNVKLYEKIRYLQSYNNK 139 (248)
T ss_pred HHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccc
Confidence 46789999999987663 467789999999999999999999998765543
No 30
>KOG0804|consensus
Probab=75.03 E-value=15 Score=33.26 Aligned_cols=36 Identities=25% Similarity=0.292 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhc
Q psy524 9 ALQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKK 44 (111)
Q Consensus 9 AL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~ 44 (111)
-+..+-+.+-.||++||.++..+.+|-..+|+....
T Consensus 372 ~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~ 407 (493)
T KOG0804|consen 372 DLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKK 407 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677888889999999888877776666655444
No 31
>KOG0239|consensus
Probab=74.68 E-value=24 Score=32.39 Aligned_cols=83 Identities=19% Similarity=0.146 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHH
Q psy524 10 LQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIFMVATENKQLW 89 (111)
Q Consensus 10 L~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLW 89 (111)
+.-...+++++-..||.++..++.+...|+..+...... ..........++.+|......|.+.- ---.+||+||
T Consensus 232 l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~ 306 (670)
T KOG0239|consen 232 LEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTRE----VQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLH 306 (670)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 344455667777777777777777777776665442222 23344455555666666666666655 4558999999
Q ss_pred HHHhhhhh
Q psy524 90 TKLSMLTE 97 (111)
Q Consensus 90 srLS~L~k 97 (111)
+++=.|.-
T Consensus 307 N~i~eLkG 314 (670)
T KOG0239|consen 307 NEILELKG 314 (670)
T ss_pred HHHHHhhc
Confidence 99977753
No 32
>smart00338 BRLZ basic region leucin zipper.
Probab=74.61 E-value=11 Score=23.77 Aligned_cols=32 Identities=22% Similarity=0.380 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHhHHHHhhhHhHhhhchHHH
Q psy524 57 VSKLNEEIEMLSQQKTQLTHHIFMVATENKQL 88 (111)
Q Consensus 57 ~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqL 88 (111)
+..|+.+|..|..+...|...|..+..||..|
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555554444
No 33
>smart00338 BRLZ basic region leucin zipper.
Probab=74.00 E-value=18 Score=22.69 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHhHhh
Q psy524 20 RCQLLQLRLSNLEEENLKLR 39 (111)
Q Consensus 20 RC~~LQ~Rl~~lEEEN~~LR 39 (111)
.-..|+.++..|+.+|..|+
T Consensus 27 ~~~~Le~~~~~L~~en~~L~ 46 (65)
T smart00338 27 EIEELERKVEQLEAENERLK 46 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666553
No 34
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=73.77 E-value=29 Score=25.27 Aligned_cols=44 Identities=34% Similarity=0.443 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHH
Q psy524 10 LQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLS 68 (111)
Q Consensus 10 L~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~ 68 (111)
+.--+..|=+=-..|...+..|.|||.+||.. +..||+.+++++
T Consensus 13 le~~l~~l~~el~~LK~~~~el~EEN~~L~iE---------------N~~Lr~~l~~~~ 56 (110)
T PRK13169 13 LEQNLGVLLKELGALKKQLAELLEENTALRLE---------------NDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHhh
Confidence 33344444445566788899999999999774 556888888773
No 35
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=73.26 E-value=8.5 Score=25.95 Aligned_cols=44 Identities=27% Similarity=0.337 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHh
Q psy524 17 MKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLT 75 (111)
Q Consensus 17 mkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~ 75 (111)
+=.|-+++=..++.|..||..|+.. ...|.+...+|..+..||.
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke~---------------n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKEK---------------NNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------HHhHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555432 3344555555555555554
No 36
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=72.86 E-value=28 Score=27.29 Aligned_cols=90 Identities=29% Similarity=0.339 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHhHhhhhhhc-cccccc-----------CCchhhHHHHHHHHH-HHHH----
Q psy524 10 LQIALQTMKDRC---QLLQLRLSNLEEENLKLRIDKKK-SETNEK-----------EPKESLVSKLNEEIE-MLSQ---- 69 (111)
Q Consensus 10 L~vALqtmkeRC---~~LQ~Rl~~lEEEN~~LR~~~~~-~~~~~~-----------~~~~sd~~~L~ekV~-EL~r---- 69 (111)
+.-=|++|++-. ....++|..|++|-...+..... ...... ......+..|-+... ||++
T Consensus 66 l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~~e~~i~~l~e~a~~el~~k~~a 145 (206)
T PF14988_consen 66 LQQELQALKEFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKEASELKILQLGERAHKELKKKAQA 145 (206)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHhhHHHHHHHHH
Confidence 344455665544 45577888888888877665542 111000 010112222222222 2232
Q ss_pred ----hHHHHhhhHhHhhhchHHHHHHHhhhhhhc
Q psy524 70 ----QKTQLTHHIFMVATENKQLWTKLSMLTEET 99 (111)
Q Consensus 70 ----QK~QL~~hI~MVa~ENRqLWsrLS~L~k~~ 99 (111)
=+..+.+|..-|-.||++||..|..+++++
T Consensus 146 le~~A~~~l~e~~~~i~~EN~~L~k~L~~l~~e~ 179 (206)
T PF14988_consen 146 LELAAKKSLDEFTRSIKRENQQLRKELLQLIQEA 179 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367789999999999999999999998853
No 37
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=71.99 E-value=22 Score=26.00 Aligned_cols=41 Identities=29% Similarity=0.329 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhH--HHHhhhHhHhhhchHHHHHHHhhhhh
Q psy524 57 VSKLNEEIEMLSQQK--TQLTHHIFMVATENKQLWTKLSMLTE 97 (111)
Q Consensus 57 ~~~L~ekV~EL~rQK--~QL~~hI~MVa~ENRqLWsrLS~L~k 97 (111)
+..|++.+..|...- .+|.+.|.-...|+..|=+||..|..
T Consensus 95 ~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 95 VKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555666666554 67888888888899999999999887
No 38
>KOG4005|consensus
Probab=71.98 E-value=12 Score=31.69 Aligned_cols=62 Identities=27% Similarity=0.300 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhc----ccccccC--CchhhHHHHHHHHHHHHHh
Q psy524 9 ALQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKK----SETNEKE--PKESLVSKLNEEIEMLSQQ 70 (111)
Q Consensus 9 AL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~----~~~~~~~--~~~sd~~~L~ekV~EL~rQ 70 (111)
|-|.|-.-=|+|-..+..-+-.|+|||.+|+..+-+ ..+.-.. .-.+.++-|++.+.||+.|
T Consensus 80 AAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~ 147 (292)
T KOG4005|consen 80 AAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQ 147 (292)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHH
Confidence 445555556778889999999999999999988865 1121111 1234566677777777544
No 39
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=71.39 E-value=21 Score=32.05 Aligned_cols=43 Identities=19% Similarity=0.260 Sum_probs=32.5
Q ss_pred CchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhc
Q psy524 2 DSTTSNCA-LQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKK 44 (111)
Q Consensus 2 ~~~~s~yA-L~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~ 44 (111)
|+|.-.-+ |-..++.|+.|-+.|..-=..+-+||.+||.....
T Consensus 55 DTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~ 98 (472)
T TIGR03752 55 DTPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQS 98 (472)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44533333 44458999999999999999999999999875543
No 40
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=70.44 E-value=7.3 Score=26.18 Aligned_cols=31 Identities=32% Similarity=0.366 Sum_probs=23.8
Q ss_pred chhhHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHHH
Q psy524 53 KESLVSKLNEEIEMLSQQKTQLTHHIFMVATENKQLWT 90 (111)
Q Consensus 53 ~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWs 90 (111)
..-+|+.|+++|.||..+..||.. ||.-|=+
T Consensus 12 VrEEVevLK~~I~eL~~~n~~Le~-------EN~~Lk~ 42 (59)
T PF01166_consen 12 VREEVEVLKEQIAELEERNSQLEE-------ENNLLKQ 42 (59)
T ss_dssp -TTSHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHh
Confidence 456889999999999999988875 5655544
No 41
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=70.23 E-value=7.6 Score=30.20 Aligned_cols=74 Identities=26% Similarity=0.240 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhccccc-ccCCchhhHHHHHHHHHHHHHhHHHHhhhHhHhh------------hchH
Q psy524 20 RCQLLQLRLSNLEEENLKLRIDKKKSETN-EKEPKESLVSKLNEEIEMLSQQKTQLTHHIFMVA------------TENK 86 (111)
Q Consensus 20 RC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~-~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa------------~ENR 86 (111)
.-..++.||.+++++=.+|+.--.+...- ..-.-..++...+.+|+.+..|+-.|.+.|.|.+ .++.
T Consensus 133 ~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~sti~i~l~~~~~~~~~~~ 212 (262)
T PF14257_consen 133 QYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDYSTITISLYEPESIKPESP 212 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceEEEEEEEEecCCCCCCCC
Confidence 34467889999999998888766542211 1113355777788899999999999999988854 2556
Q ss_pred HHHHHHh
Q psy524 87 QLWTKLS 93 (111)
Q Consensus 87 qLWsrLS 93 (111)
..|.++.
T Consensus 213 ~~~~~~~ 219 (262)
T PF14257_consen 213 SFGSRFR 219 (262)
T ss_pred CcchHHH
Confidence 6665544
No 42
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=69.79 E-value=11 Score=28.81 Aligned_cols=38 Identities=26% Similarity=0.358 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHHHHHhhhhh
Q psy524 56 LVSKLNEEIEMLSQQKTQLTHHIFMVATENKQLWTKLSMLTE 97 (111)
Q Consensus 56 d~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWsrLS~L~k 97 (111)
-+..||+++.+|..+-.+|.+ +|-+|-++|.++..+.-
T Consensus 48 Q~~~LR~~~~~L~~~l~~Li~----~Ar~Ne~~~~~~~~l~l 85 (225)
T PF04340_consen 48 QLERLRERNRQLEEQLEELIE----NARENEAIFQRLHRLVL 85 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 455677777777777777666 57899999999988764
No 43
>KOG1962|consensus
Probab=69.75 E-value=7.8 Score=31.36 Aligned_cols=44 Identities=16% Similarity=0.183 Sum_probs=36.6
Q ss_pred CchhhHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHHHHHhhh
Q psy524 52 PKESLVSKLNEEIEMLSQQKTQLTHHIFMVATENKQLWTKLSML 95 (111)
Q Consensus 52 ~~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWsrLS~L 95 (111)
...++++.+++++.+|.+|=+-+..-..-+.-||..|=+++-.-
T Consensus 169 ~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~~ 212 (216)
T KOG1962|consen 169 KKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIESG 212 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcc
Confidence 46788899999999999999999888888888888887776543
No 44
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=66.51 E-value=17 Score=29.59 Aligned_cols=31 Identities=26% Similarity=0.189 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhc
Q psy524 14 LQTMKDRCQLLQLRLSNLEEENLKLRIDKKK 44 (111)
Q Consensus 14 LqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~ 44 (111)
|+.-.+.-++++.++..+|+||.+||....-
T Consensus 78 Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~~ 108 (284)
T COG1792 78 LKKELAELEQLLEEVESLEEENKRLKELLDF 108 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3333344455577778888888888887764
No 45
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=64.61 E-value=53 Score=24.02 Aligned_cols=30 Identities=37% Similarity=0.460 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhh
Q psy524 14 LQTMKDRCQLLQLRLSNLEEENLKLRIDKK 43 (111)
Q Consensus 14 LqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~ 43 (111)
++-+.+.=.++++++..++.+...++....
T Consensus 90 l~~l~~el~~l~~~~~~~~~~l~~~~~~~~ 119 (191)
T PF04156_consen 90 LQQLQEELDQLQERIQELESELEKLKEDLQ 119 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444333
No 46
>PRK10963 hypothetical protein; Provisional
Probab=62.41 E-value=17 Score=28.16 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHHHHHhhhhh
Q psy524 55 SLVSKLNEEIEMLSQQKTQLTHHIFMVATENKQLWTKLSMLTE 97 (111)
Q Consensus 55 sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWsrLS~L~k 97 (111)
--++.||+++.+|..+-.+|.++ |-+|-.++.++.+++.
T Consensus 44 rQ~~~LR~r~~~Le~~l~~Li~~----A~~Ne~l~~~~~~l~l 82 (223)
T PRK10963 44 WQMARQRNHIHVLEEEMTLLMEQ----AIANEDLFYRLLPLQS 82 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 34567888888888888887774 7899999999998875
No 47
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=62.09 E-value=38 Score=28.77 Aligned_cols=77 Identities=21% Similarity=0.236 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhh-------HhHh
Q psy524 9 ALQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHH-------IFMV 81 (111)
Q Consensus 9 AL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~h-------I~MV 81 (111)
+|--=|..++++|.+||+-+-++-+|-.-+.. |-+..+.++.-|+.+-..+..= |==+
T Consensus 130 ~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~---------------ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaL 194 (319)
T PF09789_consen 130 DLVEQLEKLREQIEQLERDLQSLLDEKEELVT---------------ERDAYKCKAHRLNHELNYILNGDENRIVDIDAL 194 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHH
Confidence 45555789999999999999998888776633 3334555666665555444322 3334
Q ss_pred hhchHHHHHHHhhhhhhcC
Q psy524 82 ATENKQLWTKLSMLTEETN 100 (111)
Q Consensus 82 a~ENRqLWsrLS~L~k~~n 100 (111)
-.|||-|=-||..+-.|.+
T Consensus 195 i~ENRyL~erl~q~qeE~~ 213 (319)
T PF09789_consen 195 IMENRYLKERLKQLQEEKE 213 (319)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566666666665555433
No 48
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=61.75 E-value=22 Score=22.31 Aligned_cols=31 Identities=19% Similarity=0.371 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhHHHHhhhHhHhhhchHH
Q psy524 57 VSKLNEEIEMLSQQKTQLTHHIFMVATENKQ 87 (111)
Q Consensus 57 ~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRq 87 (111)
+..|+.+|.+|.....+|...+.....++..
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~ 58 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQS 58 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555554444444444444444333
No 49
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=61.46 E-value=21 Score=27.64 Aligned_cols=47 Identities=26% Similarity=0.326 Sum_probs=40.5
Q ss_pred CchhhHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHHHHHhhhhhh
Q psy524 52 PKESLVSKLNEEIEMLSQQKTQLTHHIFMVATENKQLWTKLSMLTEE 98 (111)
Q Consensus 52 ~~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWsrLS~L~k~ 98 (111)
++-..+.+|+++|+++.++-......++=|+.||++|=--|.++..+
T Consensus 24 ~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e 70 (201)
T PF13851_consen 24 NNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEE 70 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45678889999999999999999999999999999998777776553
No 50
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=61.43 E-value=2.7 Score=31.77 Aligned_cols=74 Identities=27% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhc-------ccc--cc-----cCCchhhHHHHHHHHHHHHHhHHHHhhhHhHhhhchH
Q psy524 21 CQLLQLRLSNLEEENLKLRIDKKK-------SET--NE-----KEPKESLVSKLNEEIEMLSQQKTQLTHHIFMVATENK 86 (111)
Q Consensus 21 C~~LQ~Rl~~lEEEN~~LR~~~~~-------~~~--~~-----~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENR 86 (111)
|.+|..|++.++.+|..|...... ..+ +. ..+-..-+..|++.+.++.+.+.+|...|.-.+.+++
T Consensus 26 y~~L~d~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~ 105 (194)
T PF08614_consen 26 YNRLADRTSLLKAENEQLQPEAESLPSSSSSSPSESGSVSSAQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQ 105 (194)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 466666777777777776653211 111 11 1123345667899999999999999999998888887
Q ss_pred HHHHHHhh
Q psy524 87 QLWTKLSM 94 (111)
Q Consensus 87 qLWsrLS~ 94 (111)
.|=..++.
T Consensus 106 ~l~~~~~~ 113 (194)
T PF08614_consen 106 ELEKELSE 113 (194)
T ss_dssp --------
T ss_pred hhhhhHHH
Confidence 76555443
No 51
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=60.91 E-value=44 Score=21.79 Aligned_cols=48 Identities=21% Similarity=0.356 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHh
Q psy524 17 MKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIF 79 (111)
Q Consensus 17 mkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~ 79 (111)
|-+|-..|+.|++-.|+--..| ..-|-..+.+|+.|.++-..|..+|.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~L---------------n~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEEL---------------NDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777766655544 12233444455555555555555443
No 52
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=60.90 E-value=1e+02 Score=26.13 Aligned_cols=74 Identities=18% Similarity=0.243 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHHHHHhhh
Q psy524 16 TMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIFMVATENKQLWTKLSML 95 (111)
Q Consensus 16 tmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWsrLS~L 95 (111)
-||++...+...+..+-+||-.|+..... ..++++.+++.+.+|...+++|.+-..-.-.|=-.|=.|++-|
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~elee--------le~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEE--------LEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence 46788888888888888888888765443 3567888999999999999999998888887877777777666
Q ss_pred hh
Q psy524 96 TE 97 (111)
Q Consensus 96 ~k 97 (111)
-.
T Consensus 204 e~ 205 (290)
T COG4026 204 EP 205 (290)
T ss_pred cc
Confidence 44
No 53
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=60.52 E-value=38 Score=31.74 Aligned_cols=69 Identities=25% Similarity=0.237 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccC---------CchhhHHHHHHHHHHHHHhHHHHhhh
Q psy524 9 ALQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKE---------PKESLVSKLNEEIEMLSQQKTQLTHH 77 (111)
Q Consensus 9 AL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~---------~~~sd~~~L~ekV~EL~rQK~QL~~h 77 (111)
.|.-.++-+|.|=..|=.-.+.|||||+.|--+-...-++++. --.-++..|+.+++|+.+-|.-..+|
T Consensus 80 ~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~q 157 (717)
T PF09730_consen 80 RLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQ 157 (717)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666778888888888888899999999986555543333331 22345566777777777766633333
No 54
>PRK10884 SH3 domain-containing protein; Provisional
Probab=60.48 E-value=69 Score=25.24 Aligned_cols=76 Identities=12% Similarity=0.153 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHHHH
Q psy524 12 IALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIFMVATENKQLWTK 91 (111)
Q Consensus 12 vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWsr 91 (111)
+-+..+...-..|+.+++.+..+.......-... .......+..|+++-++|.+|-.++...+-....+|..++..
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~----~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQK----VAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556566666655544332221110 000122333455555555555555555555555666666544
No 55
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=60.38 E-value=31 Score=21.33 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhh
Q psy524 15 QTMKDRCQLLQLRLSNLEEENLKLR 39 (111)
Q Consensus 15 qtmkeRC~~LQ~Rl~~lEEEN~~LR 39 (111)
--.|-|...+++++..+|.|+..||
T Consensus 44 ~~~r~~~~~~~k~l~~le~e~~~lr 68 (68)
T PF06305_consen 44 LRLRRRIRRLRKELKKLEKELEQLR 68 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4457888899999999999998876
No 56
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=60.37 E-value=43 Score=21.52 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcc
Q psy524 10 LQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKS 45 (111)
Q Consensus 10 L~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~ 45 (111)
.+....-+......+++.++.++.||..|+..-...
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 22 AQHQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666777888889999999999998876553
No 57
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=59.86 E-value=64 Score=23.40 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHhHHHHhhhHh-------HhhhchHHHHHHHhhhhhhcCCCc
Q psy524 56 LVSKLNEEIEMLSQQKTQLTHHIF-------MVATENKQLWTKLSMLTEETNVPE 103 (111)
Q Consensus 56 d~~~L~ekV~EL~rQK~QL~~hI~-------MVa~ENRqLWsrLS~L~k~~n~~l 103 (111)
-+..++.+-.+|++.=..+.-++- =++.|..+|+.+|..|..+.|.|-
T Consensus 73 rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l~~~l~~p~ 127 (141)
T PF13874_consen 73 RLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEALEAQLNAPA 127 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHcCch
Confidence 444455555555555444444443 345788899999999999999984
No 58
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=58.77 E-value=45 Score=29.95 Aligned_cols=73 Identities=23% Similarity=0.267 Sum_probs=38.5
Q ss_pred CchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhh
Q psy524 2 DSTTSNC--ALQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHH 77 (111)
Q Consensus 2 ~~~~s~y--AL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~h 77 (111)
|+|.+-+ .-.-.|..|+.-|..|-.|+..||+.+...-...+... ......++..|+++|+.+.+....|.+.
T Consensus 554 ~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~le~~~~~~~~~~p~~~---~~~~~~e~~~l~~~~~~~ekr~~RLkev 628 (722)
T PF05557_consen 554 DNPTSKAEQIKKSTLEALQAENEDLLARLRSLEEGNSQPVDAVPTSS---LESQEKEIAELKAELASAEKRNQRLKEV 628 (722)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcccccchh---hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5676522 23445666677777777777777655432210000000 0133457888999999998887777654
No 59
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=57.91 E-value=67 Score=27.45 Aligned_cols=32 Identities=34% Similarity=0.487 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy524 7 NCALQIALQTMKDRCQLLQLRLSNLEEENLKL 38 (111)
Q Consensus 7 ~yAL~vALqtmkeRC~~LQ~Rl~~lEEEN~~L 38 (111)
|.-|..=+.+.|.||..|+.-+..+-+.++++
T Consensus 36 n~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~ 67 (310)
T PF09755_consen 36 NRVLKRELETEKARCKHLQEENRALREASVRI 67 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777777766555555544444
No 60
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=57.88 E-value=22 Score=23.14 Aligned_cols=32 Identities=38% Similarity=0.475 Sum_probs=23.7
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy524 9 ALQIAL----QTMKDRCQLLQLRLSNLEEENLKLRID 41 (111)
Q Consensus 9 AL~vAL----qtmkeRC~~LQ~Rl~~lEEEN~~LR~~ 41 (111)
||..+| +.+++|....+.. ..|+.+|..||.-
T Consensus 20 ~L~~~l~rY~~vL~~R~~l~~e~-~~L~~qN~eLr~l 55 (60)
T PF14775_consen 20 ALENFLKRYNKVLLDRAALIQEK-ESLEQQNEELRSL 55 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 445554 5789998766554 8999999999863
No 61
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=57.14 E-value=26 Score=28.13 Aligned_cols=27 Identities=33% Similarity=0.418 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy524 9 ALQIALQTMKDRCQLLQLRLSNLEEENLKLR 39 (111)
Q Consensus 9 AL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR 39 (111)
||+-||+--+. |-.+|..+++|+-+||
T Consensus 119 AL~eaL~ENe~----Lh~~ie~~~eEi~~lk 145 (200)
T PF07412_consen 119 ALEEALEENEK----LHKEIEQKDEEIAKLK 145 (200)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 66666654332 4444444444444443
No 62
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=56.60 E-value=83 Score=24.14 Aligned_cols=57 Identities=33% Similarity=0.402 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhcc----ccccc---CCchhhHHHHHHHHHHHHHhHHHHhhhH
Q psy524 22 QLLQLRLSNLEEENLKLRIDKKKS----ETNEK---EPKESLVSKLNEEIEMLSQQKTQLTHHI 78 (111)
Q Consensus 22 ~~LQ~Rl~~lEEEN~~LR~~~~~~----~~~~~---~~~~sd~~~L~ekV~EL~rQK~QL~~hI 78 (111)
..++.+++.||+|+..|...-... +..+. ..........+++|.-|.++..||..++
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l 186 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQL 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777665554321 11000 0123344456667777777777776665
No 63
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=56.51 E-value=69 Score=24.62 Aligned_cols=65 Identities=18% Similarity=0.272 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHH
Q psy524 7 NCALQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQ 73 (111)
Q Consensus 7 ~yAL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~Q 73 (111)
.-+++..+..++..+..+..+++.++++-...+. ++..+.+-...-..+..|++++.+|..+-.+
T Consensus 64 ~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~--~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~ 128 (188)
T PF03962_consen 64 KQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKK--GREESEEREELLEELEELKKELKELKKELEK 128 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477888999999999999999999999888844 3433322222344566677777666665553
No 64
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=56.25 E-value=45 Score=20.46 Aligned_cols=30 Identities=37% Similarity=0.393 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy524 11 QIALQTMKDRCQLLQLRLSNLEEENLKLRI 40 (111)
Q Consensus 11 ~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~ 40 (111)
.-.=+-.|++=+.|+.++..|+.+|..|+.
T Consensus 17 ~r~R~rkk~~~~~le~~~~~L~~en~~L~~ 46 (54)
T PF07716_consen 17 RRSRQRKKQREEELEQEVQELEEENEQLRQ 46 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445566667777777777777777754
No 65
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=55.38 E-value=80 Score=23.10 Aligned_cols=58 Identities=24% Similarity=0.323 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhh
Q psy524 14 LQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTH 76 (111)
Q Consensus 14 LqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~ 76 (111)
++++|+++..|+..=..+.+|-++|-...-... .....+..|+.++.+|+..-.-+.+
T Consensus 32 ~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~-----~~~~~~~~L~~el~~l~~ry~t~Le 89 (120)
T PF12325_consen 32 LASLQEELARLEAERDELREEIVKLMEENEELR-----ALKKEVEELEQELEELQQRYQTLLE 89 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666655566666555532221111 2234666777777777765544443
No 66
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=55.34 E-value=70 Score=28.78 Aligned_cols=55 Identities=20% Similarity=0.179 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhH
Q psy524 9 ALQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHI 78 (111)
Q Consensus 9 AL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI 78 (111)
.-+-||.-..++-..|+++|+.++-|...+- .....++++|.+|.....+|..++
T Consensus 66 VnqSALteqQ~kasELEKqLaaLrqElq~~s---------------aq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 66 VRQHATTEMQVTAAQMQKQYEEIRRELDVLN---------------KQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666677777776654443220 122234555666666655555554
No 67
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=55.05 E-value=99 Score=24.06 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy524 14 LQTMKDRCQLLQLRLSNLEEENLKLR 39 (111)
Q Consensus 14 LqtmkeRC~~LQ~Rl~~lEEEN~~LR 39 (111)
=+.|.++-.+|.+.++.++..|.++.
T Consensus 51 ~~~L~~e~~~l~~e~e~L~~~~~~l~ 76 (251)
T PF11932_consen 51 KQELLAEYRQLEREIENLEVYNEQLE 76 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777777773
No 68
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=54.37 E-value=92 Score=23.49 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHH
Q psy524 55 SLVSKLNEEIEMLSQQKTQLTHHIFMVATENKQL 88 (111)
Q Consensus 55 sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqL 88 (111)
..+..|++++.+++....+|..-..-+.-|+-.|
T Consensus 52 ~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L 85 (140)
T PF10473_consen 52 AEIETLEEELEELTSELNQLELELDTLRSEKENL 85 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555444444444443
No 69
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=53.98 E-value=1.5e+02 Score=25.73 Aligned_cols=35 Identities=14% Similarity=0.375 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHH
Q psy524 55 SLVSKLNEEIEMLSQQKTQLTHHIFMVATENKQLW 89 (111)
Q Consensus 55 sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLW 89 (111)
..+..++.++.+++.|-.+|..++.=++..+++=|
T Consensus 99 ~~l~~~e~~~~~l~~q~~~Lq~~~~~ls~~~~~dW 133 (390)
T PRK10920 99 KALDQANRQQAALAKQLDELQQKVATISGSDAKTW 133 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhH
Confidence 34556677788888888888887777776666555
No 70
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=53.60 E-value=58 Score=27.68 Aligned_cols=44 Identities=25% Similarity=0.339 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHh
Q psy524 21 CQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIF 79 (111)
Q Consensus 21 C~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~ 79 (111)
-..|+.+...+..||.+|+ .+...+.++++++-..|.+++...+
T Consensus 139 ~~~l~~~~~~L~~enerL~---------------~e~~~~~~qlE~~v~~K~~~E~~L~ 182 (342)
T PF06632_consen 139 NSRLQAENEHLQKENERLE---------------SEANKLLKQLEKFVNAKEEHEEDLY 182 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666677777774 3556777788888888877766543
No 71
>KOG4643|consensus
Probab=53.47 E-value=69 Score=31.91 Aligned_cols=70 Identities=23% Similarity=0.321 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhc--c-ccccc----CCchh-----hHHHHHHHHHHHHHhHHHHhh
Q psy524 9 ALQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKK--S-ETNEK----EPKES-----LVSKLNEEIEMLSQQKTQLTH 76 (111)
Q Consensus 9 AL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~--~-~~~~~----~~~~s-----d~~~L~ekV~EL~rQK~QL~~ 76 (111)
-..+-+.-.+++|+.|..++..+|+||-.|=..-.. . .++.+ +.+.- +..++--....|++||..|+.
T Consensus 520 t~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~idaL~alrrhke~LE~ 599 (1195)
T KOG4643|consen 520 TCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKYIDALNALRRHKEKLEE 599 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778999999999999999999887332221 0 01111 11111 222333455689999999999
Q ss_pred hH
Q psy524 77 HI 78 (111)
Q Consensus 77 hI 78 (111)
.|
T Consensus 600 e~ 601 (1195)
T KOG4643|consen 600 EI 601 (1195)
T ss_pred HH
Confidence 86
No 72
>PTZ00464 SNF-7-like protein; Provisional
Probab=52.95 E-value=1.1e+02 Score=24.15 Aligned_cols=73 Identities=16% Similarity=0.322 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh--hcccccccCCchhhHH------HHHHHHHHHHHhHHHHhhhHhHh
Q psy524 10 LQIALQTMKDRCQLLQLRLSNLEEENLKLRIDK--KKSETNEKEPKESLVS------KLNEEIEMLSQQKTQLTHHIFMV 81 (111)
Q Consensus 10 L~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~--~~~~~~~~~~~~sd~~------~L~ekV~EL~rQK~QL~~hI~MV 81 (111)
+.=|.+.+++|...|++|+..+++|-...|..- ++. ......+..... .++.+++.+..|...|...+|.+
T Consensus 16 ~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~-~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~i 94 (211)
T PTZ00464 16 LEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRG-MTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTT 94 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566779999999999999999999988887443 222 111001222222 24456667777888888877776
Q ss_pred hh
Q psy524 82 AT 83 (111)
Q Consensus 82 a~ 83 (111)
-+
T Consensus 95 e~ 96 (211)
T PTZ00464 95 ES 96 (211)
T ss_pred HH
Confidence 43
No 73
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.92 E-value=79 Score=22.33 Aligned_cols=41 Identities=29% Similarity=0.416 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhh
Q psy524 21 CQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTH 76 (111)
Q Consensus 21 C~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~ 76 (111)
-..||.-+..|-|+|..| +.++..++...+.|.+...||..
T Consensus 20 I~LLQmEieELKEknn~l---------------~~e~q~~q~~reaL~~eneqlk~ 60 (79)
T COG3074 20 ITLLQMEIEELKEKNNSL---------------SQEVQNAQHQREALERENEQLKE 60 (79)
T ss_pred HHHHHHHHHHHHHHhhHh---------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999888 45777889999999999999864
No 74
>PRK04325 hypothetical protein; Provisional
Probab=51.89 E-value=70 Score=21.37 Aligned_cols=24 Identities=33% Similarity=0.329 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHh
Q psy524 15 QTMKDRCQLLQLRLSNLEEENLKL 38 (111)
Q Consensus 15 qtmkeRC~~LQ~Rl~~lEEEN~~L 38 (111)
+.|-+|-..|+.|++=.|.--..|
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~L 28 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGL 28 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777666543333
No 75
>KOG4343|consensus
Probab=51.74 E-value=25 Score=32.69 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhh
Q psy524 18 KDRCQLLQLRLSNLEEENLKLRID 41 (111)
Q Consensus 18 keRC~~LQ~Rl~~lEEEN~~LR~~ 41 (111)
||=-+-|..||..++.||..||-.
T Consensus 301 KEy~~~Le~rLq~ll~Ene~Lk~E 324 (655)
T KOG4343|consen 301 KEYMLGLEARLQALLSENEQLKKE 324 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455677888888888887654
No 76
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=51.72 E-value=73 Score=28.76 Aligned_cols=35 Identities=14% Similarity=0.125 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh
Q psy524 9 ALQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKK 43 (111)
Q Consensus 9 AL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~ 43 (111)
+..-|+.-+.+|-..++.+|...|.+-...|....
T Consensus 264 ~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~ 298 (726)
T PRK09841 264 QDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRD 298 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44567889999999999999999999998887653
No 77
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=51.61 E-value=42 Score=20.75 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy524 15 QTMKDRCQLLQLRLSNLEEENLKLRID 41 (111)
Q Consensus 15 qtmkeRC~~LQ~Rl~~lEEEN~~LR~~ 41 (111)
.+||.-|..|-..-.+|..||..||..
T Consensus 8 ~~LK~~yd~Lk~~~~~L~~E~~~L~ae 34 (45)
T PF02183_consen 8 DALKASYDSLKAEYDSLKKENEKLRAE 34 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666543
No 78
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=51.27 E-value=68 Score=21.04 Aligned_cols=70 Identities=17% Similarity=0.153 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhc--ccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHh
Q psy524 10 LQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKK--SETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIF 79 (111)
Q Consensus 10 L~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~--~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~ 79 (111)
++--|..|||--...+..+..+++.-...=...+. ...+....-...+...-.++.++..+|..+..++.
T Consensus 17 l~r~l~~irelD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l~deKv~lA~~~~ 88 (105)
T PF12998_consen 17 LQRNLTLIRELDAKSQDLLEELDQQIQKFIKNHGSPSLSPEKRRELLKEIQEEYERALELSDEKVALAQQAY 88 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678899999888888888777665555333332 11111123345667777788899999999998875
No 79
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=50.73 E-value=34 Score=24.53 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=13.5
Q ss_pred hhhchHHHHHHHhhhhh
Q psy524 81 VATENKQLWTKLSMLTE 97 (111)
Q Consensus 81 Va~ENRqLWsrLS~L~k 97 (111)
...||..|-.+|+.+.+
T Consensus 41 L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 41 LRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 34688899999998865
No 80
>KOG0982|consensus
Probab=50.50 E-value=44 Score=30.37 Aligned_cols=51 Identities=24% Similarity=0.246 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhccccccc--C----CchhhHHHHHHHHHHHHHhHH
Q psy524 22 QLLQLRLSNLEEENLKLRIDKKKSETNEK--E----PKESLVSKLNEEIEMLSQQKT 72 (111)
Q Consensus 22 ~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~--~----~~~sd~~~L~ekV~EL~rQK~ 72 (111)
+.+|.|+-.+|+||-.||...++.-+... . --...++.|+.++...++-+.
T Consensus 300 Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~ 356 (502)
T KOG0982|consen 300 ENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRV 356 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999988776322211 1 112345666666666665443
No 81
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=50.18 E-value=1.6e+02 Score=26.36 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy524 11 QIALQTMKDRCQLLQLRLSNLEEE 34 (111)
Q Consensus 11 ~vALqtmkeRC~~LQ~Rl~~lEEE 34 (111)
...+..++++...++.++..++.+
T Consensus 809 ~~~~~~~~~~l~~~~~~~~~l~~~ 832 (1179)
T TIGR02168 809 RAELTLLNEEAANLRERLESLERR 832 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 82
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=49.94 E-value=1.2e+02 Score=23.68 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHHHH
Q psy524 56 LVSKLNEEIEMLSQQKTQLTHHIFMVATENKQLWTK 91 (111)
Q Consensus 56 d~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWsr 91 (111)
++..|++++.+|.++...|...+.|+--+=+.|-+-
T Consensus 112 e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~I 147 (161)
T TIGR02894 112 QNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDI 147 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777777776666555555443
No 83
>KOG1937|consensus
Probab=49.04 E-value=1.2e+02 Score=27.85 Aligned_cols=68 Identities=18% Similarity=0.228 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHh
Q psy524 7 NCALQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIF 79 (111)
Q Consensus 7 ~yAL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~ 79 (111)
+-+..|++..++++|-++-.-.+.+| ..+|...-.... .++..+-+.+|..+|++++++-.-|+-++-
T Consensus 250 ~kqh~v~~~ales~~sq~~e~~selE---~llklkerl~e~--l~dgeayLaKL~~~l~~~~~~~~~ltqqwe 317 (521)
T KOG1937|consen 250 YKQHLVEYKALESKRSQFEEQNSELE---KLLKLKERLIEA--LDDGEAYLAKLMGKLAELNKQMEELTQQWE 317 (521)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH---HHHHhHHHHHHh--cCChHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667899999999999877777776 333333222111 124466788999999999888877776653
No 84
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=49.01 E-value=83 Score=22.36 Aligned_cols=21 Identities=10% Similarity=0.071 Sum_probs=9.6
Q ss_pred hHhHhhhchHHHHHHHhhhhh
Q psy524 77 HIFMVATENKQLWTKLSMLTE 97 (111)
Q Consensus 77 hI~MVa~ENRqLWsrLS~L~k 97 (111)
.+.-+-.+-..+|.++-.+..
T Consensus 70 ~~~~L~~~~~~k~~~~~~l~~ 90 (150)
T PF07200_consen 70 ELKELESEYQEKEQQQDELSS 90 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 333333444555555555443
No 85
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=48.83 E-value=39 Score=20.72 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHhHHHHhhhHhHhh
Q psy524 55 SLVSKLNEEIEMLSQQKTQLTHHIFMVA 82 (111)
Q Consensus 55 sd~~~L~ekV~EL~rQK~QL~~hI~MVa 82 (111)
-.+..|...|..|.....+|..+|...-
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677777788877777777776543
No 86
>smart00340 HALZ homeobox associated leucin zipper.
Probab=48.60 E-value=28 Score=22.30 Aligned_cols=20 Identities=40% Similarity=0.612 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHhHhhh
Q psy524 21 CQLLQLRLSNLEEENLKLRI 40 (111)
Q Consensus 21 C~~LQ~Rl~~lEEEN~~LR~ 40 (111)
|+.|.+--.+|-|||-+|+.
T Consensus 7 Ce~LKrcce~LteeNrRL~k 26 (44)
T smart00340 7 CELLKRCCESLTEENRRLQK 26 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777888888888754
No 87
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=48.59 E-value=1.8e+02 Score=26.28 Aligned_cols=21 Identities=10% Similarity=0.289 Sum_probs=7.6
Q ss_pred HHHHHHHHHhHHHHhhhHhHh
Q psy524 61 NEEIEMLSQQKTQLTHHIFMV 81 (111)
Q Consensus 61 ~ekV~EL~rQK~QL~~hI~MV 81 (111)
++++.++..+...+...+...
T Consensus 454 ~~~~~~~~~~~~~~~~~l~~~ 474 (1164)
T TIGR02169 454 EWKLEQLAADLSKYEQELYDL 474 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 88
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=48.32 E-value=48 Score=26.86 Aligned_cols=15 Identities=53% Similarity=0.694 Sum_probs=9.9
Q ss_pred HHHHHHHHHhHhhhh
Q psy524 27 RLSNLEEENLKLRID 41 (111)
Q Consensus 27 Rl~~lEEEN~~LR~~ 41 (111)
-+..+++||.+||.+
T Consensus 67 ~~~~l~~EN~~Lr~e 81 (283)
T TIGR00219 67 DVNNLEYENYKLRQE 81 (283)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445677777777654
No 89
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=47.74 E-value=38 Score=22.97 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy524 16 TMKDRCQLLQLRLSNLEEENLKLRID 41 (111)
Q Consensus 16 tmkeRC~~LQ~Rl~~lEEEN~~LR~~ 41 (111)
.|.+....|++....+++||..||..
T Consensus 72 ~l~~~i~~l~~ke~~l~~en~~L~~~ 97 (100)
T PF01486_consen 72 LLMEQIEELKKKERELEEENNQLRQK 97 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777888888888888888753
No 90
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=47.10 E-value=51 Score=23.22 Aligned_cols=30 Identities=17% Similarity=0.110 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q psy524 13 ALQTMKDRCQLLQLRLSNLEEENLKLRIDK 42 (111)
Q Consensus 13 ALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~ 42 (111)
+..-++.....++.+++.++.+|..|+..-
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI 57 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEI 57 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555667777777777777777777776543
No 91
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=46.71 E-value=48 Score=22.26 Aligned_cols=31 Identities=32% Similarity=0.376 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhc
Q psy524 14 LQTMKDRCQLLQLRLSNLEEENLKLRIDKKK 44 (111)
Q Consensus 14 LqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~ 44 (111)
|+++-+|-.+|=.|..-+..||..||.....
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~ 32 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKT 32 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888888999988876543
No 92
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=46.50 E-value=1.6e+02 Score=24.05 Aligned_cols=95 Identities=24% Similarity=0.293 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhc-------cc---ccccCCchhhHHHHHHHHHHHHHhHHHHhh
Q psy524 7 NCALQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKK-------SE---TNEKEPKESLVSKLNEEIEMLSQQKTQLTH 76 (111)
Q Consensus 7 ~yAL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~-------~~---~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~ 76 (111)
+-||...+++.|+|=-.|..-++-+.++--.|...... .. ......-...+..++++...+..++..|.+
T Consensus 91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~ 170 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKE 170 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66888888888888777766666655554444333221 11 000012344566667777777777777766
Q ss_pred hHhHhhhchHHHHHHHhhhhhhcCCCcccccc
Q psy524 77 HIFMVATENKQLWTKLSMLTEETNVPEQSINL 108 (111)
Q Consensus 77 hI~MVa~ENRqLWsrLS~L~k~~n~~lg~~~~ 108 (111)
++ |+.|-+-..+|-+ -++..|-..+
T Consensus 171 ~l------~~ell~~yeri~~-~~kg~gvvpl 195 (239)
T COG1579 171 KL------DPELLSEYERIRK-NKKGVGVVPL 195 (239)
T ss_pred hc------CHHHHHHHHHHHh-cCCCceEEee
Confidence 65 8999999999999 4447775544
No 93
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=46.48 E-value=60 Score=22.50 Aligned_cols=24 Identities=42% Similarity=0.616 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy524 9 ALQIALQTMKDRCQLLQLRLSNLEEENLKLR 39 (111)
Q Consensus 9 AL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR 39 (111)
+||-+|..|-+ |+..+.+||..|+
T Consensus 27 ~LQ~sL~~L~~-------Rve~Vk~E~~kL~ 50 (80)
T PF10224_consen 27 ELQDSLEALSD-------RVEEVKEENEKLE 50 (80)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 45555555544 5555666666663
No 94
>KOG3650|consensus
Probab=46.27 E-value=16 Score=27.38 Aligned_cols=21 Identities=43% Similarity=0.620 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhHhhhhh
Q psy524 22 QLLQLRLSNLEEENLKLRIDK 42 (111)
Q Consensus 22 ~~LQ~Rl~~lEEEN~~LR~~~ 42 (111)
.-|-.|+.++-|||..||+..
T Consensus 73 dDLSqRVdsVKEEnLKLrSEN 93 (120)
T KOG3650|consen 73 DDLSQRVDSVKEENLKLRSEN 93 (120)
T ss_pred HHHHHHHHHHHHhhhhhhhhh
Confidence 356789999999999998763
No 95
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=46.06 E-value=34 Score=22.05 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHhHHHHhhh
Q psy524 56 LVSKLNEEIEMLSQQKTQLTHH 77 (111)
Q Consensus 56 d~~~L~ekV~EL~rQK~QL~~h 77 (111)
-++.+-++|+||++....|..+
T Consensus 20 kiedid~qIaeLe~KR~~Lv~q 41 (46)
T PF08946_consen 20 KIEDIDEQIAELEAKRQRLVDQ 41 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 4667788999999998888764
No 96
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=45.84 E-value=96 Score=25.83 Aligned_cols=71 Identities=21% Similarity=0.214 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHhHhhhhhhccc------ccccCCchhhHHHHHHHHHHHHHhHHHHhhhHhH
Q psy524 11 QIALQTMKDRCQLLQLRLSNLEE----ENLKLRIDKKKSE------TNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIFM 80 (111)
Q Consensus 11 ~vALqtmkeRC~~LQ~Rl~~lEE----EN~~LR~~~~~~~------~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~M 80 (111)
..=++.++..+.+|++..+.++. |-..+|..-.... .........++..+...|++.+.+|.++...|.=
T Consensus 178 ~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ 257 (312)
T smart00787 178 RDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAE 257 (312)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345566666666666666644 5556663322210 1111245667777888888888888888888764
Q ss_pred h
Q psy524 81 V 81 (111)
Q Consensus 81 V 81 (111)
.
T Consensus 258 a 258 (312)
T smart00787 258 A 258 (312)
T ss_pred H
Confidence 3
No 97
>PRK06835 DNA replication protein DnaC; Validated
Probab=45.23 E-value=56 Score=27.05 Aligned_cols=50 Identities=24% Similarity=0.357 Sum_probs=30.8
Q ss_pred HHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhh
Q psy524 28 LSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHH 77 (111)
Q Consensus 28 l~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~h 77 (111)
|..+++|-..+-....+..-...++....++.|++++.+|..+|.+|...
T Consensus 38 ~~~id~~i~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~lL~~ 87 (329)
T PRK06835 38 IAEIDDEIAKLGIKLSRAILKNPDKKEETLKELKEKITDLRVKKAELLVS 87 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445554444333333222111123788999999999999999998643
No 98
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=45.21 E-value=1.1e+02 Score=21.65 Aligned_cols=48 Identities=31% Similarity=0.421 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhH
Q psy524 9 ALQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQK 71 (111)
Q Consensus 9 AL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK 71 (111)
-+.-|...++.|-..|...+..++++-..++ ..++.+++.+.++..++
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~---------------~~~~~~~~~l~~l~~~~ 138 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLA---------------SRIAQLAQELQQLQQEA 138 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHh
Confidence 3566888888888888888888887766663 34556666777766654
No 99
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=44.85 E-value=1.8e+02 Score=24.87 Aligned_cols=79 Identities=15% Similarity=0.155 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh--c---ccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHh
Q psy524 5 TSNCALQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKK--K---SETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIF 79 (111)
Q Consensus 5 ~s~yAL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~--~---~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~ 79 (111)
..|.+.+..|..+++++.+++..++.+-.+--.+-..-- + ++-+..-.+++-+-..++-|.-|...-.||.=.||
T Consensus 273 ~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrIG 352 (359)
T PF10498_consen 273 QEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRIG 352 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 348889999999999999999999988866655533321 1 11111113456777889999999999999999999
Q ss_pred Hhhh
Q psy524 80 MVAT 83 (111)
Q Consensus 80 MVa~ 83 (111)
+|-+
T Consensus 353 Vleh 356 (359)
T PF10498_consen 353 VLEH 356 (359)
T ss_pred eehh
Confidence 8753
No 100
>PRK00846 hypothetical protein; Provisional
Probab=44.45 E-value=1e+02 Score=21.22 Aligned_cols=25 Identities=12% Similarity=0.111 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhHHHHhhhHhHh
Q psy524 57 VSKLNEEIEMLSQQKTQLTHHIFMV 81 (111)
Q Consensus 57 ~~~L~ekV~EL~rQK~QL~~hI~MV 81 (111)
++.|..-|.+.+++-..|.+++..+
T Consensus 29 Ie~LN~~v~~qq~~I~~L~~ql~~L 53 (77)
T PRK00846 29 LTELSEALADARLTGARNAELIRHL 53 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555554443
No 101
>COG5158 SEC1 Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion]
Probab=44.42 E-value=1e+02 Score=28.39 Aligned_cols=70 Identities=13% Similarity=0.198 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHhHhh-----hchHHHHHHHh
Q psy524 19 DRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIFMVA-----TENKQLWTKLS 93 (111)
Q Consensus 19 eRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa-----~ENRqLWsrLS 93 (111)
+==.+++..+..+..++..+.-. +. .+..|+..-=++.-||++.+.+|.-|+++++ .++|.||. ++
T Consensus 289 ~v~e~l~~~~~~l~~~~~~~~~~------~~--~s~~dik~~v~~lpel~~~~~~l~~H~~l~~e~l~~~~~~~l~~-f~ 359 (582)
T COG5158 289 EVGEKLKKLAKELKTKAQLRHKE------NA--KSVNDIKEFVDKLPELQKRSRSLNKHLTLASELLKVVEERYLDD-FS 359 (582)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhh------hc--ccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 33467788888888888877511 00 1345666666788899999999999999996 68888885 44
Q ss_pred hhhh
Q psy524 94 MLTE 97 (111)
Q Consensus 94 ~L~k 97 (111)
.|-.
T Consensus 360 eIEq 363 (582)
T COG5158 360 EIEQ 363 (582)
T ss_pred HHHH
Confidence 4443
No 102
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=43.92 E-value=1e+02 Score=20.86 Aligned_cols=30 Identities=30% Similarity=0.447 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy524 10 LQIALQTMKDRCQLLQLRLSNLEEENLKLR 39 (111)
Q Consensus 10 L~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR 39 (111)
+.-|...+++|...|+.++..++++-..++
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~ 114 (129)
T cd00890 85 LEEAIEFLKKRLETLEKQIEKLEKQLEKLQ 114 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455788888999999888888887766553
No 103
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=43.51 E-value=1.3e+02 Score=22.31 Aligned_cols=59 Identities=22% Similarity=0.266 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhcccc-c------ccCCchhhHHHHHHHHHHHHHhHHHHhhh
Q psy524 19 DRCQLLQLRLSNLEEENLKLRIDKKKSET-N------EKEPKESLVSKLNEEIEMLSQQKTQLTHH 77 (111)
Q Consensus 19 eRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~-~------~~~~~~sd~~~L~ekV~EL~rQK~QL~~h 77 (111)
.|=-.+-+++..+|++...++.+...... . ..+....++..|+.++++.....+-|..|
T Consensus 118 ~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ 183 (192)
T PF05529_consen 118 RRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456667777777777766655432111 1 11234556666666665544443333333
No 104
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=43.02 E-value=92 Score=20.46 Aligned_cols=22 Identities=14% Similarity=0.370 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHhHHHHhhhH
Q psy524 57 VSKLNEEIEMLSQQKTQLTHHI 78 (111)
Q Consensus 57 ~~~L~ekV~EL~rQK~QL~~hI 78 (111)
+.+++.+.+++...-+.+.+-|
T Consensus 16 i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 16 INTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444
No 105
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=42.92 E-value=1.9e+02 Score=25.91 Aligned_cols=66 Identities=18% Similarity=0.312 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHhHhhh
Q psy524 14 LQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIFMVAT 83 (111)
Q Consensus 14 LqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ 83 (111)
++-.+++|+.+..++..+-+++..++......... -..+-....++++.|..-+.+|..+.-=.|+
T Consensus 55 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~----le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~ 120 (475)
T PRK10361 55 SEHWRAECELLNNEVRSLQSINTSLEADLREVTTR----MEAAQQHADDKIRQMINSEQRLSEQFENLAN 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666665555444332111 1223345667777788777777776655554
No 106
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=42.80 E-value=44 Score=23.58 Aligned_cols=23 Identities=17% Similarity=0.253 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhh
Q psy524 19 DRCQLLQLRLSNLEEENLKLRID 41 (111)
Q Consensus 19 eRC~~LQ~Rl~~lEEEN~~LR~~ 41 (111)
=+-.+++++.+.|.+||..|+-.
T Consensus 23 ~k~~ka~~~~~kL~~en~qlk~E 45 (87)
T PF10883_consen 23 WKVKKAKKQNAKLQKENEQLKTE 45 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777788888777544
No 107
>KOG3990|consensus
Probab=42.79 E-value=1.2e+02 Score=25.99 Aligned_cols=20 Identities=20% Similarity=0.311 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy524 11 QIALQTMKDRCQLLQLRLSN 30 (111)
Q Consensus 11 ~vALqtmkeRC~~LQ~Rl~~ 30 (111)
-|+.+-||||--.|.++|..
T Consensus 224 ~V~i~~lkeeia~Lkk~L~q 243 (305)
T KOG3990|consen 224 MVKIQKLKEEIARLKKLLHQ 243 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 48899999999988888863
No 108
>KOG1853|consensus
Probab=42.24 E-value=93 Score=26.86 Aligned_cols=67 Identities=19% Similarity=0.279 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhcccccccC---CchhhHHHHHHHHHHHHHhHHHHhhhHhHhhhchH
Q psy524 20 RCQLLQLRLSNLEEENLKLRIDKKKSETNEKE---PKESLVSKLNEEIEMLSQQKTQLTHHIFMVATENK 86 (111)
Q Consensus 20 RC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~---~~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENR 86 (111)
--.++.+|.-.+|-+|++|+....+.-.-..+ -----++.|+-..+-+-.+|+||-.+|.=.---|-
T Consensus 53 qL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaND 122 (333)
T KOG1853|consen 53 QLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQAND 122 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44567788888889999998887652111110 01124556788888888889999888865544443
No 109
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=42.22 E-value=1.5e+02 Score=28.07 Aligned_cols=74 Identities=15% Similarity=0.206 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHhHhhhhhhcccccc--cCCchhhHHHHHHHHHHHHHhHHHHhhhHhHhh
Q psy524 9 ALQIALQTMKDRCQLLQLRLSNLEE---ENLKLRIDKKKSETNE--KEPKESLVSKLNEEIEMLSQQKTQLTHHIFMVA 82 (111)
Q Consensus 9 AL~vALqtmkeRC~~LQ~Rl~~lEE---EN~~LR~~~~~~~~~~--~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa 82 (111)
=|++.+.-.+++|..|+..+..+.. =+++++.-...-.... .....++|+.|..-+.++-..|-.+.-+|+=..
T Consensus 518 ~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~Le 596 (775)
T PF10174_consen 518 RLEIELEKKREKHEKLEKQLEKLRANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEKKIGELE 596 (775)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3789999999999999888866321 1222211111100000 013567888888888887777777777765433
No 110
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=41.95 E-value=98 Score=26.79 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhHHHHhhhHhHhhh
Q psy524 59 KLNEEIEMLSQQKTQLTHHIFMVAT 83 (111)
Q Consensus 59 ~L~ekV~EL~rQK~QL~~hI~MVa~ 83 (111)
.++.+++.|.++-..|.++|.+|-.
T Consensus 197 ~~~~~~~~l~~~~~~l~~~~~~l~~ 221 (475)
T PF10359_consen 197 ELKSDIEELERHISSLKERIEFLEN 221 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666543
No 111
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=41.94 E-value=1.2e+02 Score=23.11 Aligned_cols=32 Identities=25% Similarity=0.362 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhc
Q psy524 13 ALQTMKDRCQLLQLRLSNLEEENLKLRIDKKK 44 (111)
Q Consensus 13 ALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~ 44 (111)
.|..+--|++.....+.-|.++|.+|.....+
T Consensus 37 ~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ 68 (158)
T PF09744_consen 37 LLESLASRNQEHEVELELLREDNEQLETQYER 68 (158)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 34555566666777777777777777665543
No 112
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=41.90 E-value=1.9e+02 Score=23.58 Aligned_cols=26 Identities=35% Similarity=0.451 Sum_probs=15.7
Q ss_pred hhhHHHHHHHHHHHHHhHHHHhhhHh
Q psy524 54 ESLVSKLNEEIEMLSQQKTQLTHHIF 79 (111)
Q Consensus 54 ~sd~~~L~ekV~EL~rQK~QL~~hI~ 79 (111)
..++..++++|++++.+|.++...|.
T Consensus 236 ~~el~~l~~~i~~~~~~k~~l~~eI~ 261 (325)
T PF08317_consen 236 QEELEELEEKIEELEEQKQELLAEIA 261 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666554
No 113
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=41.53 E-value=93 Score=21.23 Aligned_cols=36 Identities=33% Similarity=0.417 Sum_probs=24.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy524 3 STTSNCALQIALQTMKDRCQLLQLRLSNLEEENLKLR 39 (111)
Q Consensus 3 ~~~s~yAL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR 39 (111)
+|...++.+++=...+++ .+|..++..++++|..|-
T Consensus 65 ~P~~~i~a~l~~~~~~~~-~~L~~~l~~l~~eN~~L~ 100 (109)
T PF03980_consen 65 TPEEDIRAHLAPYKKKER-EQLNARLQELEEENEALA 100 (109)
T ss_pred ChHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 344555556554444444 578999999999998874
No 114
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=41.45 E-value=1.9e+02 Score=23.48 Aligned_cols=54 Identities=24% Similarity=0.324 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHH
Q psy524 13 ALQTMKDRCQLLQLRL-SNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEM 66 (111)
Q Consensus 13 ALqtmkeRC~~LQ~Rl-~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~E 66 (111)
+||.=-||=++|.+|| .-||.|-..||.++....+........+...|++++.|
T Consensus 14 ~LQaa~ekRE~lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrE 68 (205)
T PF12240_consen 14 QLQAACEKREQLERRLRTRLERELESLRAQQRQGNSSGSSSPSNNASNLKELLRE 68 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHH
Confidence 4455556667888888 46999999999998763333332222334445444443
No 115
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=40.85 E-value=60 Score=22.90 Aligned_cols=30 Identities=17% Similarity=0.206 Sum_probs=16.7
Q ss_pred HHhHHHHhhhHhHhhhchHHHHHHHhhhhh
Q psy524 68 SQQKTQLTHHIFMVATENKQLWTKLSMLTE 97 (111)
Q Consensus 68 ~rQK~QL~~hI~MVa~ENRqLWsrLS~L~k 97 (111)
++|..++..++.=+-.+|..|...+..|..
T Consensus 33 ~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 33 NDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 333333333344445677777777777654
No 116
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=40.50 E-value=1.8e+02 Score=22.78 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHh
Q psy524 15 QTMKDRCQLLQLRLSNLEEENLKL 38 (111)
Q Consensus 15 qtmkeRC~~LQ~Rl~~lEEEN~~L 38 (111)
..+|-..+.|+..+..++..|..|
T Consensus 219 ~~~r~~~~~l~~el~~l~~~~~~L 242 (312)
T PF00038_consen 219 KELRRQIQSLQAELESLRAKNASL 242 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHhhhhhhccccchhhh
Confidence 334444444444444444444333
No 117
>PF14282 FlxA: FlxA-like protein
Probab=40.24 E-value=1.3e+02 Score=21.08 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhh
Q psy524 19 DRCQLLQLRLSNLEEENLKLRID 41 (111)
Q Consensus 19 eRC~~LQ~Rl~~lEEEN~~LR~~ 41 (111)
.+-..|++++..|.++-..|...
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~ 41 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQD 41 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc
Confidence 34456777777777777766543
No 118
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=40.23 E-value=1.7e+02 Score=22.56 Aligned_cols=23 Identities=9% Similarity=0.215 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy524 10 LQIALQTMKDRCQLLQLRLSNLE 32 (111)
Q Consensus 10 L~vALqtmkeRC~~LQ~Rl~~lE 32 (111)
..+|.-.|-+....++.|+.+|-
T Consensus 22 ~d~~ad~Ll~qa~~l~~~i~sm~ 44 (181)
T PF05769_consen 22 HDNAADSLLSQAEALNKQIESMR 44 (181)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677778888888888775
No 119
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=39.98 E-value=92 Score=19.32 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy524 12 IALQTMKDRCQLLQLRLSNLEEENLKLRID 41 (111)
Q Consensus 12 vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~ 41 (111)
.++..++..=..|+..++.+..||..|+..
T Consensus 17 ~~~~~~~~ei~~l~~~i~~l~~e~~~L~~e 46 (80)
T PF04977_consen 17 SRYYQLNQEIAELQKEIEELKKENEELKEE 46 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666666666666444
No 120
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=39.80 E-value=47 Score=24.36 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy524 10 LQIALQTMKDRCQLLQLRLSNLEE 33 (111)
Q Consensus 10 L~vALqtmkeRC~~LQ~Rl~~lEE 33 (111)
-..+|..+++|...+.+||..||.
T Consensus 82 ~~~~l~~~~~~~~~~e~Rl~~mE~ 105 (121)
T TIGR02978 82 PRQALREVKREFRDLERRLRNMER 105 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346799999999999999999995
No 121
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=39.26 E-value=71 Score=20.49 Aligned_cols=16 Identities=38% Similarity=0.260 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHhHh
Q psy524 23 LLQLRLSNLEEENLKL 38 (111)
Q Consensus 23 ~LQ~Rl~~lEEEN~~L 38 (111)
+++..++.++.+...+
T Consensus 28 ~~~~~~~~~~~~~~~l 43 (85)
T TIGR02209 28 QLNNELQKLQLEIDKL 43 (85)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444444
No 122
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=39.22 E-value=95 Score=19.30 Aligned_cols=59 Identities=20% Similarity=0.136 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHh
Q psy524 10 LQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQ 70 (111)
Q Consensus 10 L~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQ 70 (111)
...|.....+||..+...+....++|...|..-......-+ ..+|....-..+.+|+.+
T Consensus 7 F~~a~~~~~~~~~~~~~~~~~~~~~n~~~K~~Li~~~~~l~--~~~d~~~~~~~~k~l~~~ 65 (77)
T PF03993_consen 7 FRAACDAFFDRRKEFFEEQDAEREENLEKKEALIEEAEALA--ESEDWKEAAEEIKELQQE 65 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHHHH
Confidence 45678888999999999999999999999887654221111 123355566666666543
No 123
>PRK09458 pspB phage shock protein B; Provisional
Probab=39.18 E-value=47 Score=23.11 Aligned_cols=22 Identities=18% Similarity=0.397 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy524 12 IALQTMKDRCQLLQLRLSNLEE 33 (111)
Q Consensus 12 vALqtmkeRC~~LQ~Rl~~lEE 33 (111)
.-|+.|-++-+.+|.|+.+||.
T Consensus 42 ~~L~~L~~~A~rm~~RI~tLE~ 63 (75)
T PRK09458 42 QRLAQLTEKAERMRERIQALEA 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3478888999999999999995
No 124
>KOG0161|consensus
Probab=39.08 E-value=1.5e+02 Score=30.98 Aligned_cols=80 Identities=21% Similarity=0.277 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHH
Q psy524 10 LQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIFMVATENKQLW 89 (111)
Q Consensus 10 L~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLW 89 (111)
.+.|.+-+++=-...++|+..++.|...||......+-.... -.++...+.+.|.++.-+.+. -+.++|.||
T Consensus 1651 ~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~-aE~e~~E~~e~i~~~~~~~s~-------l~~~KrklE 1722 (1930)
T KOG0161|consen 1651 AQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQ-AELELEELAERVNELNAQNSS-------LTAEKRKLE 1722 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHhhcccc-------hhhHHHHHH
Confidence 344555555555666899999999999999887654433321 134455555555555555544 457899999
Q ss_pred HHHhhhhh
Q psy524 90 TKLSMLTE 97 (111)
Q Consensus 90 srLS~L~k 97 (111)
.+|+.|-.
T Consensus 1723 ~~i~~l~~ 1730 (1930)
T KOG0161|consen 1723 AEIAQLQS 1730 (1930)
T ss_pred HHHHHHHH
Confidence 99998765
No 125
>KOG0999|consensus
Probab=38.98 E-value=2.5e+02 Score=26.79 Aligned_cols=76 Identities=32% Similarity=0.350 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccC--CchhhHHHHHHHHHHHHHhHHHHhhhHhHhhhchHH
Q psy524 10 LQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKE--PKESLVSKLNEEIEMLSQQKTQLTHHIFMVATENKQ 87 (111)
Q Consensus 10 L~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~--~~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRq 87 (111)
|.--|+-.|.|=..|=.--+.|||||+.|--.-+..-++++. +-.-++.-|.+.++=|+ +|+.+-|..--+--+|
T Consensus 154 lr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln---~q~ee~~~Lk~IAekQ 230 (772)
T KOG0999|consen 154 LRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLN---SQLEEAIRLKEIAEKQ 230 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 455678889999999888999999999996655554455442 33444555555554443 3444444443333333
Q ss_pred H
Q psy524 88 L 88 (111)
Q Consensus 88 L 88 (111)
|
T Consensus 231 l 231 (772)
T KOG0999|consen 231 L 231 (772)
T ss_pred H
Confidence 3
No 126
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=38.96 E-value=1.7e+02 Score=28.44 Aligned_cols=60 Identities=25% Similarity=0.312 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccc-cc------ccCCchhhHHHHHHHHHHHHHhHHHH
Q psy524 12 IALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSE-TN------EKEPKESLVSKLNEEIEMLSQQKTQL 74 (111)
Q Consensus 12 vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~-~~------~~~~~~sd~~~L~ekV~EL~rQK~QL 74 (111)
.|||-|+--=-+|-|||-+| |++||+...... +. +..+=+|-.-+|+.|+.|..+.-+.|
T Consensus 387 LA~QplrsENaqLrRrLril---nqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~l 453 (861)
T PF15254_consen 387 LAMQPLRSENAQLRRRLRIL---NQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELL 453 (861)
T ss_pred hhhhhhhhhhHHHHHHHHHH---HHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 58999999999999999998 789998664321 11 11134555566677777665554443
No 127
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=38.87 E-value=1.1e+02 Score=22.19 Aligned_cols=36 Identities=25% Similarity=0.305 Sum_probs=21.8
Q ss_pred HHHHHHHHhHHHHhhhHhHhhhchHHHHHHHhhhhh
Q psy524 62 EEIEMLSQQKTQLTHHIFMVATENKQLWTKLSMLTE 97 (111)
Q Consensus 62 ekV~EL~rQK~QL~~hI~MVa~ENRqLWsrLS~L~k 97 (111)
+++++|..+=..|.+--.-...||..|=.+|+.+..
T Consensus 22 ~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 22 KELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444444444444444446799999999999843
No 128
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=38.72 E-value=54 Score=26.61 Aligned_cols=34 Identities=26% Similarity=0.101 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHHHHH
Q psy524 56 LVSKLNEEIEMLSQQKTQLTHHIFMVATENKQLWTKL 92 (111)
Q Consensus 56 d~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWsrL 92 (111)
+...|++++++|+.+..+ ...-+..||++|=.-|
T Consensus 74 EN~~Lr~e~~~l~~~~~~---~~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 74 ENYKLRQELLKKNQQLEI---LTQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence 444455555555222222 2233667777764433
No 129
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=38.65 E-value=1.2e+02 Score=20.42 Aligned_cols=26 Identities=23% Similarity=0.159 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy524 15 QTMKDRCQLLQLRLSNLEEENLKLRI 40 (111)
Q Consensus 15 qtmkeRC~~LQ~Rl~~lEEEN~~LR~ 40 (111)
+...+--..||.+++....+|-.|+.
T Consensus 24 ~~Wq~sy~~Lq~~~~~t~~~~a~L~~ 49 (70)
T PF04899_consen 24 QEWQSSYADLQHMFEQTSQENAALSE 49 (70)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33445566677777777777665543
No 130
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=38.64 E-value=84 Score=21.15 Aligned_cols=26 Identities=35% Similarity=0.320 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy524 9 ALQIALQTMKDRCQLLQLRLSNLEEE 34 (111)
Q Consensus 9 AL~vALqtmkeRC~~LQ~Rl~~lEEE 34 (111)
|+...=++||+||..|...=..+-+|
T Consensus 21 alrQ~N~~Mker~e~l~~wqe~~~~e 46 (68)
T PF11577_consen 21 ALRQNNQAMKERFEELLAWQEKQKEE 46 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666689999999996655544443
No 131
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=38.26 E-value=55 Score=21.78 Aligned_cols=39 Identities=15% Similarity=0.092 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhHHHHhhhHhHhhhchHHHHHHHhhhhh
Q psy524 59 KLNEEIEMLSQQKTQLTHHIFMVATENKQLWTKLSMLTE 97 (111)
Q Consensus 59 ~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWsrLS~L~k 97 (111)
.-..-...|++...-..+++++-.-||..|=..+..|.+
T Consensus 23 ~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~ 61 (69)
T PF14197_consen 23 VHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRK 61 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666777777777777777777777777666655
No 132
>PRK08871 flgK flagellar hook-associated protein FlgK; Validated
Probab=38.08 E-value=2.4e+02 Score=25.71 Aligned_cols=80 Identities=11% Similarity=0.091 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHhHhhhchH
Q psy524 8 CALQIALQTMKDRCQLLQLRLSNLEEE-NLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIFMVATENK 86 (111)
Q Consensus 8 yAL~vALqtmkeRC~~LQ~Rl~~lEEE-N~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENR 86 (111)
-++.-+.++|-.|-..+-.+|..++++ |..++.. -.+++.|-++|++|++|-.....+-.=.--+=-
T Consensus 133 q~vl~~A~~La~~fn~~~~~L~~~~~~vn~qi~~~------------V~~IN~l~~qIA~LN~qI~~~~g~pNdLlDqRD 200 (626)
T PRK08871 133 KVVLEKAKLISQTLNDFHETVRQQKDVTNKKLDLG------------VERINQIALEIRDIHRLMMRTPGPHNDLMDQHE 200 (626)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHH
Confidence 345556677888888888888877766 4444332 457888999999999886553311000001113
Q ss_pred HHHHHHhhhhhhcC
Q psy524 87 QLWTKLSMLTEETN 100 (111)
Q Consensus 87 qLWsrLS~L~k~~n 100 (111)
+|=..||++.. ++
T Consensus 201 ~ll~eLS~~v~-v~ 213 (626)
T PRK08871 201 KLVKELSQYTK-VT 213 (626)
T ss_pred HHHHHHHhhcC-eE
Confidence 56777888776 44
No 133
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=37.99 E-value=2.8e+02 Score=24.40 Aligned_cols=85 Identities=19% Similarity=0.214 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccccc-cc-CCchhhHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHH
Q psy524 11 QIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETN-EK-EPKESLVSKLNEEIEMLSQQKTQLTHHIFMVATENKQL 88 (111)
Q Consensus 11 ~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~-~~-~~~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqL 88 (111)
..|.+........+...|..+++.|..|...-.+...+ .. .+....+..+.+++.++.++-..+.+.|......=-.+
T Consensus 302 ~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel 381 (569)
T PRK04778 302 VKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSEL 381 (569)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 35667777777788888888888888888777663222 11 23456677777777777777777776666655554444
Q ss_pred HHHHhhh
Q psy524 89 WTKLSML 95 (111)
Q Consensus 89 WsrLS~L 95 (111)
..++-.+
T Consensus 382 ~e~leel 388 (569)
T PRK04778 382 QEELEEI 388 (569)
T ss_pred HHHHHHH
Confidence 4444443
No 134
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=37.80 E-value=2.4e+02 Score=24.12 Aligned_cols=82 Identities=21% Similarity=0.204 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHhhhhhhc----ccccccCCchhhHHHHHHHHHHHHHhHHHHh
Q psy524 7 NCALQIALQTMKDRCQLL-------QLRLSNLEEENLKLRIDKKK----SETNEKEPKESLVSKLNEEIEMLSQQKTQLT 75 (111)
Q Consensus 7 ~yAL~vALqtmkeRC~~L-------Q~Rl~~lEEEN~~LR~~~~~----~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~ 75 (111)
+..|-..|--.|||...| +.|+..+..++--||..-.+ ..+........+=+.|=.+++.+++|..||.
T Consensus 67 ~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe 146 (319)
T PF09789_consen 67 NKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLE 146 (319)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 456667777778887655 56777778888888887665 2222222223677788899999999999999
Q ss_pred hhHhHhhhchHHH
Q psy524 76 HHIFMVATENKQL 88 (111)
Q Consensus 76 ~hI~MVa~ENRqL 88 (111)
+-+.=+..|=..|
T Consensus 147 ~d~qs~lDEkeEl 159 (319)
T PF09789_consen 147 RDLQSLLDEKEEL 159 (319)
T ss_pred HHHHHHHHHHHHH
Confidence 9888777664433
No 135
>PRK10227 DNA-binding transcriptional regulator CueR; Provisional
Probab=37.34 E-value=48 Score=24.01 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHhHHHHhhhHhH
Q psy524 56 LVSKLNEEIEMLSQQKTQLTHHIFM 80 (111)
Q Consensus 56 d~~~L~ekV~EL~rQK~QL~~hI~M 80 (111)
-+..+.++|++|+..+..|.+++.-
T Consensus 87 ~~~~l~~~i~~L~~~~~~L~~~~~~ 111 (135)
T PRK10227 87 KVAEIERHIEELQSMRDQLLALANA 111 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456888888888888888877753
No 136
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=37.15 E-value=90 Score=24.37 Aligned_cols=14 Identities=14% Similarity=0.230 Sum_probs=6.1
Q ss_pred HHHHhHHHHhhhHh
Q psy524 66 MLSQQKTQLTHHIF 79 (111)
Q Consensus 66 EL~rQK~QL~~hI~ 79 (111)
+|..+..+|.+...
T Consensus 97 ~l~~en~~L~~lL~ 110 (276)
T PRK13922 97 QLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHhc
Confidence 44444444444433
No 137
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=36.78 E-value=2.5e+02 Score=26.09 Aligned_cols=56 Identities=18% Similarity=0.306 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHh
Q psy524 9 ALQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIF 79 (111)
Q Consensus 9 AL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~ 79 (111)
.+..-|+-||.-|++||.|+..|..-=..=|.. +.+|+.++.|..+++..++-+..
T Consensus 457 ~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~---------------l~~LEkrL~eE~~~R~~lEkQL~ 512 (697)
T PF09726_consen 457 SLKSELSQLRQENEQLQNKLQNLVQARQQDKQS---------------LQQLEKRLAEERRQRASLEKQLQ 512 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH
No 138
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=36.73 E-value=50 Score=22.54 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy524 11 QIALQTMKDRCQLLQLRLSNLEE 33 (111)
Q Consensus 11 ~vALqtmkeRC~~LQ~Rl~~lEE 33 (111)
.--|+.|-++-+.|+.|+.+||.
T Consensus 41 ~~~L~~L~~~a~rm~eRI~tLE~ 63 (75)
T TIGR02976 41 QALLQELYAKADRLEERIDTLER 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578888899999999999984
No 139
>PF14645 Chibby: Chibby family
Probab=36.55 E-value=1.3e+02 Score=21.83 Aligned_cols=21 Identities=38% Similarity=0.376 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHhHhhhhh
Q psy524 22 QLLQLRLSNLEEENLKLRIDK 42 (111)
Q Consensus 22 ~~LQ~Rl~~lEEEN~~LR~~~ 42 (111)
+.++++...|+|||--||..+
T Consensus 74 ~~l~~~n~~L~EENN~Lklk~ 94 (116)
T PF14645_consen 74 QRLRKENQQLEEENNLLKLKI 94 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456778888999999998874
No 140
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=36.50 E-value=43 Score=24.52 Aligned_cols=20 Identities=35% Similarity=0.396 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHhHhhhh
Q psy524 22 QLLQLRLSNLEEENLKLRID 41 (111)
Q Consensus 22 ~~LQ~Rl~~lEEEN~~LR~~ 41 (111)
+.|+++...|||||--||..
T Consensus 75 ~rlkkk~~~LeEENNlLklK 94 (108)
T cd07429 75 LRLKKKNQQLEEENNLLKLK 94 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999988876
No 141
>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1
Probab=36.43 E-value=68 Score=24.04 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHH
Q psy524 21 CQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEML 67 (111)
Q Consensus 21 C~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL 67 (111)
|..+|..|++-.+.-..||.+|..+... -+-++..|+.|.-.+
T Consensus 1 ~~~~Q~mIdisa~~L~glRtqc~~s~el----tqqeIr~lE~KLvK~ 43 (129)
T PF13543_consen 1 CEDIQSMIDISAEQLEGLRTQCATSSEL----TQQEIRTLEGKLVKY 43 (129)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhccchHH----HHHHHHHHHHHHHHH
Confidence 8899999999999999999998763222 123455555554443
No 142
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=36.27 E-value=2.6e+02 Score=23.41 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhh
Q psy524 17 MKDRCQLLQLRLSNLEEENLKLR 39 (111)
Q Consensus 17 mkeRC~~LQ~Rl~~lEEEN~~LR 39 (111)
.......+|.++..++.+...+.
T Consensus 51 ~~~q~~~~~~~~~~L~~ql~~~~ 73 (372)
T PF04375_consen 51 QQQQLQQLQQQLQALQQQLQQLQ 73 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666555544
No 143
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=36.14 E-value=1.2e+02 Score=19.66 Aligned_cols=44 Identities=20% Similarity=0.282 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHhHhh
Q psy524 24 LQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIFMVA 82 (111)
Q Consensus 24 LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa 82 (111)
++.||..||..-... ...++.|..-|.+.+++-..|.+++..+.
T Consensus 2 le~Ri~~LE~~la~q---------------e~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~ 45 (69)
T PF04102_consen 2 LEERIEELEIKLAFQ---------------EDTIEELNDVVTEQQRQIDRLQRQLRLLR 45 (69)
T ss_dssp HHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777665544 23577777777777777777777776544
No 144
>KOG0766|consensus
Probab=36.01 E-value=27 Score=29.66 Aligned_cols=14 Identities=43% Similarity=0.446 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHH
Q psy524 13 ALQTMKDRCQLLQL 26 (111)
Q Consensus 13 ALqtmkeRC~~LQ~ 26 (111)
-|..+|-||||+|+
T Consensus 34 PLDLLKTR~Qq~qr 47 (297)
T KOG0766|consen 34 PLDLLKTRLQQLQR 47 (297)
T ss_pred cHHHHHHHHHHHHH
Confidence 57789999999994
No 145
>KOG0709|consensus
Probab=35.74 E-value=39 Score=30.49 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=11.4
Q ss_pred HHhhhHhHhhhchHHHHHHHhhhhh
Q psy524 73 QLTHHIFMVATENKQLWTKLSMLTE 97 (111)
Q Consensus 73 QL~~hI~MVa~ENRqLWsrLS~L~k 97 (111)
+|++-|.--+.||..||++...|.+
T Consensus 276 ~LE~rv~~~taeNqeL~kkV~~Le~ 300 (472)
T KOG0709|consen 276 GLESRVSAFTAENQELQKKVEELEL 300 (472)
T ss_pred HHhhhhhhcccCcHHHHHHHHHHhh
Confidence 3444444444444444444444443
No 146
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=35.74 E-value=1e+02 Score=25.70 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhhc
Q psy524 15 QTMKDRCQLLQLRLSNLEEENLKLRIDKKK 44 (111)
Q Consensus 15 qtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~ 44 (111)
.|+-+|+..|++-+..|++|-...+...+.
T Consensus 90 Es~~~kl~RL~~Ev~EL~eEl~~~~~~~~~ 119 (388)
T PF04912_consen 90 ESPEQKLQRLRREVEELKEELEKRKADSKE 119 (388)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 477899999999999999998887655443
No 147
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=35.64 E-value=81 Score=26.24 Aligned_cols=18 Identities=28% Similarity=0.294 Sum_probs=16.1
Q ss_pred HhhhchHHHHHHHhhhhh
Q psy524 80 MVATENKQLWTKLSMLTE 97 (111)
Q Consensus 80 MVa~ENRqLWsrLS~L~k 97 (111)
=+.|++|++|.++..|.+
T Consensus 169 ~~~N~~R~~~~~l~~l~~ 186 (380)
T TIGR02263 169 AVFNDNRKLIQALYGLRA 186 (380)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 367999999999999988
No 148
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=34.84 E-value=1.5e+02 Score=20.24 Aligned_cols=74 Identities=27% Similarity=0.329 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhc------cccc--------------ccCCchhhHHHHHHHHHHH
Q psy524 8 CALQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKK------SETN--------------EKEPKESLVSKLNEEIEML 67 (111)
Q Consensus 8 yAL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~------~~~~--------------~~~~~~sd~~~L~ekV~EL 67 (111)
+||...-.-+..+...+..|-..|+..-..|+..... .... .......++..|..+|+.|
T Consensus 14 ~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l 93 (126)
T PF13863_consen 14 LALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEEL 93 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455566666777777777777777666553 0000 0024567888888889999
Q ss_pred HHhHHHHhhhHhHh
Q psy524 68 SQQKTQLTHHIFMV 81 (111)
Q Consensus 68 ~rQK~QL~~hI~MV 81 (111)
.....++.+.|..-
T Consensus 94 ~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 94 KSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888887643
No 149
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=34.68 E-value=80 Score=24.65 Aligned_cols=29 Identities=28% Similarity=0.359 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhHHHHhhhHhHhhhchHHHHHHH
Q psy524 60 LNEEIEMLSQQKTQLTHHIFMVATENKQLWTKL 92 (111)
Q Consensus 60 L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWsrL 92 (111)
|++++++|..+..++. -...||.+|=.-|
T Consensus 81 L~~e~~~l~~~~~~~~----~l~~en~~L~~lL 109 (276)
T PRK13922 81 LKKELLELESRLQELE----QLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHh
Confidence 3344444444444442 3466777664443
No 150
>KOG0818|consensus
Probab=34.66 E-value=52 Score=30.68 Aligned_cols=44 Identities=23% Similarity=0.295 Sum_probs=40.4
Q ss_pred hhhHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHHHHHhhhhh
Q psy524 54 ESLVSKLNEEIEMLSQQKTQLTHHIFMVATENKQLWTKLSMLTE 97 (111)
Q Consensus 54 ~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWsrLS~L~k 97 (111)
.++.+.|+.++-.+++|-.+|.+-+-|...+|-+|=+.++-...
T Consensus 422 ~~e~s~l~~~~vt~~~q~~el~~~v~~l~~~n~~l~s~~~~~r~ 465 (669)
T KOG0818|consen 422 KSELSDLRKQAVTLTKQVQELTEVVHALQASNAKLQSLMKVNRE 465 (669)
T ss_pred hhhhhhHhhcchhhHHHHHHHHHHHHHHHhhhHHHHHHHhhccc
Confidence 67889999999999999999999999999999999998877665
No 151
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=34.05 E-value=64 Score=27.64 Aligned_cols=39 Identities=21% Similarity=0.257 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHhH---HHHhhhHhHhhhchHHH--HHHHhhhhh
Q psy524 56 LVSKLNEEIEMLSQQK---TQLTHHIFMVATENKQL--WTKLSMLTE 97 (111)
Q Consensus 56 d~~~L~ekV~EL~rQK---~QL~~hI~MVa~ENRqL--WsrLS~L~k 97 (111)
++..|.+.+++.+-.| +.|.+-|. ++||.. |.++..+.+
T Consensus 163 ql~~l~~~LEe~tG~kit~e~L~eaI~---n~nr~~~~~~e~~~l~~ 206 (430)
T TIGR03191 163 QLHDGIEFVEKASGRKCDDELFIKAIK---NEMRSTARWADICALNK 206 (430)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHH---HHHHHHHHHHHHHHHhc
Confidence 3444555555555443 33444444 889888 999999988
No 152
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=34.03 E-value=1.4e+02 Score=21.75 Aligned_cols=31 Identities=26% Similarity=0.425 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHhHHHHhhhHhHhhhch
Q psy524 55 SLVSKLNEEIEMLSQQKTQLTHHIFMVATEN 85 (111)
Q Consensus 55 sd~~~L~ekV~EL~rQK~QL~~hI~MVa~EN 85 (111)
+++..|+.+++-|+++|.+|.+-|.=.+.+|
T Consensus 30 ~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~ 60 (120)
T PF12325_consen 30 GELASLQEELARLEAERDELREEIVKLMEEN 60 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555444444444
No 153
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=33.73 E-value=60 Score=22.25 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy524 11 QIALQTMKDRCQLLQLRLSNLEE 33 (111)
Q Consensus 11 ~vALqtmkeRC~~LQ~Rl~~lEE 33 (111)
.--|+-|-++-+.++.|+.+||.
T Consensus 41 ~~~L~~L~~~a~rm~eRI~tLE~ 63 (75)
T PF06667_consen 41 EQRLQELYEQAERMEERIETLER 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888899999999999985
No 154
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=33.26 E-value=67 Score=24.20 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhHHH--HhhhHhHhhhchHHHHHHHhhhhhhc
Q psy524 60 LNEEIEMLSQQKTQ--LTHHIFMVATENKQLWTKLSMLTEET 99 (111)
Q Consensus 60 L~ekV~EL~rQK~Q--L~~hI~MVa~ENRqLWsrLS~L~k~~ 99 (111)
|+..++++.+-... ....++|-..||+ ||..|+.|+..|
T Consensus 45 lkRDl~~~a~~~~~~~~~~~~~~~lie~s-lw~~L~~ItDkT 85 (146)
T PF07295_consen 45 LKRDLEEFARYYEELREWLSPDLQLIEES-LWDELSSITDKT 85 (146)
T ss_pred HHHHHHHHHHHHHHhhhhccccHHHHHHH-HHHHHHhhhchh
Confidence 66677777666666 7777888888884 999999998644
No 155
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=33.16 E-value=59 Score=23.25 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=21.5
Q ss_pred CchhhHHHHHHHHHHHHHhHHHHhh
Q psy524 52 PKESLVSKLNEEIEMLSQQKTQLTH 76 (111)
Q Consensus 52 ~~~sd~~~L~ekV~EL~rQK~QL~~ 76 (111)
+...|+..|..+|++|..+-.+|.+
T Consensus 93 ~tk~ev~~L~~RI~~Le~~l~~l~~ 117 (118)
T TIGR01837 93 PSREEIEALSAKIEQLAVQVEELRR 117 (118)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5678999999999999998887754
No 156
>KOG4643|consensus
Probab=33.14 E-value=2.3e+02 Score=28.57 Aligned_cols=60 Identities=22% Similarity=0.232 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHH
Q psy524 7 NCALQIALQTMKDRCQLLQLRL--SNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQL 74 (111)
Q Consensus 7 ~yAL~vALqtmkeRC~~LQ~Rl--~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL 74 (111)
|.||+.-+++|+|--+.|..|= .++|-|++.++-.-. +-.++....|.|++||.-..++|
T Consensus 273 N~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~--------dm~~erdtdr~kteeL~eEnstL 334 (1195)
T KOG4643|consen 273 NRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLD--------DMRSERDTDRHKTEELHEENSTL 334 (1195)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHH--------HHHHhhhhHHHHHHHHHHHHHHH
Confidence 5677777777777777776666 677777777753321 11233344555555555555544
No 157
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=32.86 E-value=1.7e+02 Score=22.16 Aligned_cols=68 Identities=16% Similarity=0.178 Sum_probs=37.6
Q ss_pred chhHHHHHHH------HHHHHHHHHHHHHHHHHHHHH-------HHhHhhhhhhcccccc------c----CCchhhHHH
Q psy524 3 STTSNCALQI------ALQTMKDRCQLLQLRLSNLEE-------ENLKLRIDKKKSETNE------K----EPKESLVSK 59 (111)
Q Consensus 3 ~~~s~yAL~v------ALqtmkeRC~~LQ~Rl~~lEE-------EN~~LR~~~~~~~~~~------~----~~~~sd~~~ 59 (111)
.|.|||+-.+ +-..+++++..|+..+..-.+ +--.+|.....+..+= . .+..+++..
T Consensus 88 ~f~syY~~L~~~id~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~ 167 (184)
T PF05791_consen 88 TFQSYYDTLVEAIDQKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGENGDIPQ 167 (184)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHH
T ss_pred HHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHH
Confidence 4578888544 456777788777766555444 4444444433322110 0 245577778
Q ss_pred HHHHHHHHHHh
Q psy524 60 LNEEIEMLSQQ 70 (111)
Q Consensus 60 L~ekV~EL~rQ 70 (111)
|+.+|.+++.+
T Consensus 168 L~~~I~~~~~~ 178 (184)
T PF05791_consen 168 LQKQIENLNEE 178 (184)
T ss_dssp HHHHHHHHTGG
T ss_pred HHHHHHHHHHH
Confidence 88888777654
No 158
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=32.84 E-value=91 Score=22.57 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy524 10 LQIALQTMKDRCQLLQLRLSNLEEE 34 (111)
Q Consensus 10 L~vALqtmkeRC~~LQ~Rl~~lEEE 34 (111)
|+-|--.||.+|+.|...-..||.+
T Consensus 69 Lqqa~~~Lkkk~e~L~~age~Le~~ 93 (97)
T PF15136_consen 69 LQQARDQLKKKCEELRQAGEELERD 93 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678888888888887777765
No 159
>PRK00295 hypothetical protein; Provisional
Probab=32.75 E-value=1.5e+02 Score=19.51 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy524 17 MKDRCQLLQLRLSNLEEE 34 (111)
Q Consensus 17 mkeRC~~LQ~Rl~~lEEE 34 (111)
|-+|-..|+.|++=.|.-
T Consensus 3 ~e~Ri~~LE~kla~qE~t 20 (68)
T PRK00295 3 LEERVTELESRQAFQDDT 20 (68)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445656666666655543
No 160
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=32.60 E-value=53 Score=24.32 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=23.3
Q ss_pred CchhhHHHHHHHHHHHHHhHHHHhhhHh
Q psy524 52 PKESLVSKLNEEIEMLSQQKTQLTHHIF 79 (111)
Q Consensus 52 ~~~sd~~~L~ekV~EL~rQK~QL~~hI~ 79 (111)
+-+|+...|++.|++|.+|=.+|.+.+.
T Consensus 80 ~r~~~~~~l~~rvd~Lerqv~~Lenk~k 107 (108)
T COG3937 80 ARQSEMDELTERVDALERQVADLENKLK 107 (108)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4467888999999999999999887653
No 161
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=32.51 E-value=2.7e+02 Score=22.46 Aligned_cols=33 Identities=33% Similarity=0.331 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy524 8 CALQIALQTMKDRCQLLQLRLSNLEEENLKLRID 41 (111)
Q Consensus 8 yAL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~ 41 (111)
-|++.| +++++=-.-|-.-+..+||+|-.|=.+
T Consensus 57 qal~~a-K~l~eEledLk~~~~~lEE~~~~L~aq 89 (193)
T PF14662_consen 57 QALQKA-KALEEELEDLKTLAKSLEEENRSLLAQ 89 (193)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 455555556666666666666666333
No 162
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=32.48 E-value=1.6e+02 Score=23.47 Aligned_cols=42 Identities=19% Similarity=0.269 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHHHHHhhhh
Q psy524 55 SLVSKLNEEIEMLSQQKTQLTHHIFMVATENKQLWTKLSMLT 96 (111)
Q Consensus 55 sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWsrLS~L~ 96 (111)
..++.|+.+|.+|.-|-+++.++|.-+--..|.|.-.|-.+.
T Consensus 61 ~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~ 102 (263)
T PRK10803 61 QQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLS 102 (263)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666677766555443
No 163
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=32.38 E-value=2.5e+02 Score=22.10 Aligned_cols=53 Identities=23% Similarity=0.234 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHH
Q psy524 5 TSNCALQIALQTMKDRCQ--------LLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIE 65 (111)
Q Consensus 5 ~s~yAL~vALqtmkeRC~--------~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~ 65 (111)
..++-+.+|++-|=+|=. +|++|+...+..-..+|... +.+..+++.|++.|.
T Consensus 123 k~~~d~l~S~r~lf~R~~k~~~~~i~~l~~ri~~~~~kl~~l~~~~--------~~~~~e~ekl~~~i~ 183 (246)
T cd07597 123 KLQLDLLVSLRDLFERHEKLSLNNIQRLLKRIELNKKKLESLRAKP--------DVKGAEVDKLEASII 183 (246)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhhcCC--------CCchhHHHHHHHHHh
Confidence 346778888888888765 88999999999888887542 235678888888875
No 164
>PRK12793 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=32.16 E-value=24 Score=25.68 Aligned_cols=11 Identities=36% Similarity=0.610 Sum_probs=9.2
Q ss_pred hchHHHHHHHh
Q psy524 83 TENKQLWTKLS 93 (111)
Q Consensus 83 ~ENRqLWsrLS 93 (111)
..||+||+.|-
T Consensus 50 ~~NrrLWt~~~ 60 (115)
T PRK12793 50 YFTRRLWTVLI 60 (115)
T ss_pred HHHHHHHHHHH
Confidence 47999999874
No 165
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=31.92 E-value=1.9e+02 Score=20.71 Aligned_cols=35 Identities=37% Similarity=0.528 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhc
Q psy524 10 LQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKK 44 (111)
Q Consensus 10 L~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~ 44 (111)
|+-=||.-+|=-..|-+-++-||++|..|+..-.+
T Consensus 6 LR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~k 40 (96)
T PF11365_consen 6 LRRQLQFVEEEAELLRRKLSELEDENKQLTEELNK 40 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55567888888889999999999999999877654
No 166
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=31.92 E-value=75 Score=23.40 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy524 11 QIALQTMKDRCQLLQLRLSNLEE 33 (111)
Q Consensus 11 ~vALqtmkeRC~~LQ~Rl~~lEE 33 (111)
..+|..+++|...+.+||..||.
T Consensus 80 ~~~l~~~~~~~~~~e~Rlr~mE~ 102 (118)
T PRK10697 80 SELLDEVDRELAAGEQRLREMER 102 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999995
No 167
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=31.67 E-value=1.8e+02 Score=24.11 Aligned_cols=63 Identities=24% Similarity=0.313 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhh
Q psy524 13 ALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTH 76 (111)
Q Consensus 13 ALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~ 76 (111)
.|.|.|.==...-..+..||.||..+|.-+-....+.++ -..+...+..+++-+.+|..+|..
T Consensus 238 ~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~-m~eer~~~~~~~~~~~~k~~kLe~ 300 (309)
T PF09728_consen 238 VFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIE-MAEERQKLEKELEKLKKKIEKLEK 300 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777888899999999998887665544332 123455566777778887777764
No 168
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=31.60 E-value=1.4e+02 Score=23.89 Aligned_cols=18 Identities=33% Similarity=0.233 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHhHhhh
Q psy524 23 LLQLRLSNLEEENLKLRI 40 (111)
Q Consensus 23 ~LQ~Rl~~lEEEN~~LR~ 40 (111)
+||.+|..|..|..+||.
T Consensus 58 ~l~~ql~~lq~ev~~LrG 75 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRG 75 (263)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 456666666666666654
No 169
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=31.54 E-value=2.1e+02 Score=21.05 Aligned_cols=39 Identities=21% Similarity=0.289 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHHHHHhhhhh
Q psy524 55 SLVSKLNEEIEMLSQQKTQLTHHIFMVATENKQLWTKLSMLTE 97 (111)
Q Consensus 55 sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWsrLS~L~k 97 (111)
.+|..+++++.+....-..-..+.. .+| +|+.|+..|-.
T Consensus 49 ~eld~~~~~l~~~k~~lee~~~~~~--~~E--~l~rriq~LEe 87 (143)
T PF12718_consen 49 EELDKLEEQLKEAKEKLEESEKRKS--NAE--QLNRRIQLLEE 87 (143)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH--hHH--HHHhhHHHHHH
Confidence 4666677766666655555444432 223 78887776644
No 170
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=31.53 E-value=4e+02 Score=24.18 Aligned_cols=20 Identities=10% Similarity=-0.002 Sum_probs=7.8
Q ss_pred hhhHhHhhhchHHHHHHHhh
Q psy524 75 THHIFMVATENKQLWTKLSM 94 (111)
Q Consensus 75 ~~hI~MVa~ENRqLWsrLS~ 94 (111)
...+..+..+...++..++.
T Consensus 454 ~~~~~~~~~~~~~~~~~l~~ 473 (1164)
T TIGR02169 454 EWKLEQLAADLSKYEQELYD 473 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444433
No 171
>PF06034 DUF919: Nucleopolyhedrovirus protein of unknown function (DUF919); InterPro: IPR009265 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf29. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several short baculovirus proteins of unknown function.
Probab=30.95 E-value=98 Score=20.68 Aligned_cols=32 Identities=34% Similarity=0.551 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhHHHHhhhHhHhhhchHHHHHHHhhhhh
Q psy524 58 SKLNEEIEMLSQQKTQLTHHIFMVATENKQLWTKLSMLTE 97 (111)
Q Consensus 58 ~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWsrLS~L~k 97 (111)
.+|+.+..++.+-|.++.-+. +=|-||-+|+|
T Consensus 4 ~~L~~QLd~I~~~K~~l~ik~--------~H~Ekl~kitK 35 (62)
T PF06034_consen 4 RSLTQQLDEINQMKRQLTIKS--------QHWEKLKKITK 35 (62)
T ss_pred ccHHHHHHHHHHHHHHHHHHH--------HHHHHHHhccC
Confidence 468999999999999987554 46999999998
No 172
>PRK02793 phi X174 lysis protein; Provisional
Probab=30.69 E-value=1.6e+02 Score=19.47 Aligned_cols=17 Identities=29% Similarity=0.266 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy524 17 MKDRCQLLQLRLSNLEE 33 (111)
Q Consensus 17 mkeRC~~LQ~Rl~~lEE 33 (111)
|-+|-..|+.|++=.|.
T Consensus 6 ~e~Ri~~LE~~lafQe~ 22 (72)
T PRK02793 6 LEARLAELESRLAFQEI 22 (72)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566666666665554
No 173
>KOG4797|consensus
Probab=30.48 E-value=65 Score=24.38 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=15.8
Q ss_pred chhhHHHHHHHHHHHHHhHHHHhh
Q psy524 53 KESLVSKLNEEIEMLSQQKTQLTH 76 (111)
Q Consensus 53 ~~sd~~~L~ekV~EL~rQK~QL~~ 76 (111)
...+|+.|+++|-||-....+|++
T Consensus 65 VREEVe~Lk~qI~eL~er~~~Le~ 88 (123)
T KOG4797|consen 65 VREEVEVLKEQIRELEERNSALER 88 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777666666654
No 174
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=30.00 E-value=71 Score=23.73 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=21.7
Q ss_pred CchhhHHHHHHHHHHHHHhHHHHhh
Q psy524 52 PKESLVSKLNEEIEMLSQQKTQLTH 76 (111)
Q Consensus 52 ~~~sd~~~L~ekV~EL~rQK~QL~~ 76 (111)
+...|++.|..+|++|+.+=..|..
T Consensus 106 Ps~~dv~~L~~rId~L~~~v~~l~~ 130 (132)
T PF05597_consen 106 PSRKDVEALSARIDQLTAQVERLAN 130 (132)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6788999999999999998877754
No 175
>PF15456 Uds1: Up-regulated During Septation
Probab=29.94 E-value=2.3e+02 Score=20.82 Aligned_cols=70 Identities=19% Similarity=0.257 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--Hhhhhhhccccc--------ccCCchhhHHHHHHHHHHHHHhHHHHhhhH
Q psy524 9 ALQIALQTMKDRCQLLQLRLSNLEEENL--KLRIDKKKSETN--------EKEPKESLVSKLNEEIEMLSQQKTQLTHHI 78 (111)
Q Consensus 9 AL~vALqtmkeRC~~LQ~Rl~~lEEEN~--~LR~~~~~~~~~--------~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI 78 (111)
.|---++.+-.||.++++.++ +|-.-- ..++...-..+. .......++..+..+|+|+..+-.+++.-.
T Consensus 26 ~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~le~R~ 104 (124)
T PF15456_consen 26 ELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWKLENRL 104 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 455668889999999999998 664321 111111101111 001234566777788888887776665443
Q ss_pred h
Q psy524 79 F 79 (111)
Q Consensus 79 ~ 79 (111)
.
T Consensus 105 ~ 105 (124)
T PF15456_consen 105 A 105 (124)
T ss_pred H
Confidence 3
No 176
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=29.54 E-value=56 Score=29.42 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=18.9
Q ss_pred hhhHHHHHHHHHHHHHhHHHHhhhHh
Q psy524 54 ESLVSKLNEEIEMLSQQKTQLTHHIF 79 (111)
Q Consensus 54 ~sd~~~L~ekV~EL~rQK~QL~~hI~ 79 (111)
..|+..+| ||++|++|-.+|..|+.
T Consensus 24 ~~~~~~~q-kie~L~kql~~Lk~q~~ 48 (489)
T PF11853_consen 24 ADDIDLLQ-KIEALKKQLEELKAQQD 48 (489)
T ss_pred hhhhHHHH-HHHHHHHHHHHHHHhhc
Confidence 34555566 88888888888888877
No 177
>KOG0977|consensus
Probab=29.48 E-value=2e+02 Score=26.39 Aligned_cols=76 Identities=24% Similarity=0.312 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhcc----ccccc--CCchhhHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHHHHHhhh
Q psy524 22 QLLQLRLSNLEEENLKLRIDKKKS----ETNEK--EPKESLVSKLNEEIEMLSQQKTQLTHHIFMVATENKQLWTKLSML 95 (111)
Q Consensus 22 ~~LQ~Rl~~lEEEN~~LR~~~~~~----~~~~~--~~~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWsrLS~L 95 (111)
..++.-+.-+++|+..||-.-... .+.+. +.-.+-+..|+.++.-+.+-...|++-+.=+-.||-+||..|-.+
T Consensus 109 a~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~ 188 (546)
T KOG0977|consen 109 AKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARA 188 (546)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 457888899999998887654432 22222 234566778999999999999999999999999999999999887
Q ss_pred hh
Q psy524 96 TE 97 (111)
Q Consensus 96 ~k 97 (111)
.+
T Consensus 189 r~ 190 (546)
T KOG0977|consen 189 RK 190 (546)
T ss_pred HH
Confidence 75
No 178
>KOG0483|consensus
Probab=29.30 E-value=65 Score=25.56 Aligned_cols=51 Identities=24% Similarity=0.322 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHH-HhhhHhHhhhch
Q psy524 20 RCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQ-LTHHIFMVATEN 85 (111)
Q Consensus 20 RC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~Q-L~~hI~MVa~EN 85 (111)
.|..|++-+.++-.+|.+| ++++..|+..+..+..+..+ ......|++.++
T Consensus 113 d~~~Lk~~~~~l~~~~~~L---------------q~e~~eL~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (198)
T KOG0483|consen 113 DYESLKRQLESLRSENDRL---------------QSEVQELVAELSSLKREMQKSPENTLTMCPNSE 164 (198)
T ss_pred hHHHHHHHHHHHhhhhhHH---------------HHHHHHHHHHHhhhhhhhccCcccccccCcccc
Confidence 4666666666666666665 34455555555555555444 556666776665
No 179
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=29.15 E-value=3.3e+02 Score=22.48 Aligned_cols=21 Identities=29% Similarity=0.333 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHhHhhhh
Q psy524 21 CQLLQLRLSNLEEENLKLRID 41 (111)
Q Consensus 21 C~~LQ~Rl~~lEEEN~~LR~~ 41 (111)
...++..+..+|+|-..+...
T Consensus 45 ~~~~~~el~~le~Ee~~l~~e 65 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQE 65 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666655555443
No 180
>PRK14127 cell division protein GpsB; Provisional
Probab=28.81 E-value=1.4e+02 Score=21.70 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=9.5
Q ss_pred hchHHHHHHHhhhhh
Q psy524 83 TENKQLWTKLSMLTE 97 (111)
Q Consensus 83 ~ENRqLWsrLS~L~k 97 (111)
.-|--+-.|||.|-|
T Consensus 85 ~tn~DiLKRls~LEk 99 (109)
T PRK14127 85 ATNYDILKRLSNLEK 99 (109)
T ss_pred cchHHHHHHHHHHHH
Confidence 356666667776665
No 181
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=28.79 E-value=5.3e+02 Score=24.80 Aligned_cols=15 Identities=33% Similarity=0.381 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHh
Q psy524 22 QLLQLRLSNLEEENL 36 (111)
Q Consensus 22 ~~LQ~Rl~~lEEEN~ 36 (111)
+.|+..+..++++..
T Consensus 824 ~~~~~ei~~l~~~~~ 838 (1163)
T COG1196 824 ERLEQEIEELEEEIE 838 (1163)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 182
>PRK04325 hypothetical protein; Provisional
Probab=28.75 E-value=1.8e+02 Score=19.35 Aligned_cols=46 Identities=22% Similarity=0.230 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHhHhh
Q psy524 22 QLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIFMVA 82 (111)
Q Consensus 22 ~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa 82 (111)
..++.||..||..-.-. ..-++.|..-|.+.+++-..|.+++.++.
T Consensus 5 ~~~e~Ri~~LE~klAfQ---------------E~tIe~LN~vv~~Qq~~I~~L~~ql~~L~ 50 (74)
T PRK04325 5 QEMEDRITELEIQLAFQ---------------EDLIDGLNATVARQQQTLDLLQAQLRLLY 50 (74)
T ss_pred hhHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888877544333 22455666667777777677777766653
No 183
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=28.72 E-value=2.6e+02 Score=21.15 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy524 5 TSNCALQIALQTMKDRCQLLQLRLSNLEE 33 (111)
Q Consensus 5 ~s~yAL~vALqtmkeRC~~LQ~Rl~~lEE 33 (111)
.+.|.++..++.+++.-..|+.++...=+
T Consensus 20 ~~L~~~~~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 20 NRLLELRSELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888889999888888888877544
No 184
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=28.70 E-value=2.6e+02 Score=21.15 Aligned_cols=31 Identities=16% Similarity=0.288 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy524 11 QIALQTMKDRCQLLQLRLSNLEEENLKLRID 41 (111)
Q Consensus 11 ~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~ 41 (111)
......+++|+..|..++..+.++....|..
T Consensus 62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~ 92 (302)
T PF10186_consen 62 KREIEELRERLERLRERIERLRKRIEQKRER 92 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666666665555555444
No 185
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=28.46 E-value=2.2e+02 Score=20.30 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy524 7 NCALQIALQTMKDRCQLLQLRLSNLEEENLKLRID 41 (111)
Q Consensus 7 ~yAL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~ 41 (111)
+-.|....+.+++++..+++.++..++.--.+...
T Consensus 68 ~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~ 102 (151)
T PF11559_consen 68 IERLQNDVERLKEQLEELERELASAEEKERQLQKQ 102 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777888888888877777766665444
No 186
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=28.43 E-value=4.3e+02 Score=23.56 Aligned_cols=59 Identities=20% Similarity=0.213 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhH
Q psy524 12 IALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHI 78 (111)
Q Consensus 12 vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI 78 (111)
-.+.-.+++-.+|+.-|..+|+|.-+++.+-.. ...++..++.+|+.+...+.+|..+=
T Consensus 52 ~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~--------s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 52 KKIREQQDQRAKLEKQLKSLETEIASLEAQLIE--------TADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 334445566666777777777777666544332 23466778888888888888777665
No 187
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=28.26 E-value=1.9e+02 Score=19.83 Aligned_cols=26 Identities=35% Similarity=0.404 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHhHHHHhhhHhHhhhc
Q psy524 59 KLNEEIEMLSQQKTQLTHHIFMVATE 84 (111)
Q Consensus 59 ~L~ekV~EL~rQK~QL~~hI~MVa~E 84 (111)
.|.+.+.+|..+..++...|.-..++
T Consensus 4 ~l~~~~~~L~~~~~~l~~~i~~~~~~ 29 (83)
T PF07061_consen 4 SLEAEIQELKEQIEQLEKEISELEAE 29 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555555555555555555554443
No 188
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=28.23 E-value=2.6e+02 Score=21.05 Aligned_cols=73 Identities=19% Similarity=0.207 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHH
Q psy524 16 TMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIFMVATENKQLW 89 (111)
Q Consensus 16 tmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLW 89 (111)
+=|.=|..|+..+..|-.+.-+|...-....+.. .+-.-++...+++|.||-.-.+-+.++|.-+-.|-+++=
T Consensus 49 n~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk-~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~ 121 (140)
T PF10473_consen 49 NSKAEIETLEEELEELTSELNQLELELDTLRSEK-ENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLK 121 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3344455555555554444444444332211110 112235667788888888888888888888777755544
No 189
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=28.10 E-value=1.6e+02 Score=18.43 Aligned_cols=42 Identities=24% Similarity=0.391 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHH
Q psy524 22 QLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEML 67 (111)
Q Consensus 22 ~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL 67 (111)
..|+..+..+.+|-..||......... +.+.+..++-.|+-+
T Consensus 8 ~EL~~~l~~lr~eLf~Lr~~~~~~~~~----~~~~i~~~Rk~IARi 49 (55)
T TIGR00012 8 EELAKKLDELKKELFELRFQKATGQLA----KPHRIRQVRRDIARL 49 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcc----cchHHHHHHHHHHHH
Confidence 468899999999999999775443322 467888888888754
No 190
>PF07309 FlaF: Flagellar protein FlaF; InterPro: IPR010845 This family consists of several bacterial FlaF flagellar proteins. FlaF and FlaG are trans-acting, regulatory factors that modulate flagellin synthesis during flagellum biogenesis [].
Probab=28.09 E-value=31 Score=24.69 Aligned_cols=14 Identities=29% Similarity=0.465 Sum_probs=10.9
Q ss_pred hchHHHHHHHhhhh
Q psy524 83 TENKQLWTKLSMLT 96 (111)
Q Consensus 83 ~ENRqLWsrLS~L~ 96 (111)
..||+||+.|...-
T Consensus 49 ~~N~rLW~~~~~dl 62 (113)
T PF07309_consen 49 HFNRRLWTIFAADL 62 (113)
T ss_pred HHHHHHHHHHHHHH
Confidence 47999999986543
No 191
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=28.06 E-value=1.1e+02 Score=20.41 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy524 7 NCALQIALQTMKDRCQLLQLRLSNLEE 33 (111)
Q Consensus 7 ~yAL~vALqtmkeRC~~LQ~Rl~~lEE 33 (111)
+=|+...|.-.++|-..|..||+.||.
T Consensus 52 Fd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 52 FDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 446666677778888888888888774
No 192
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=27.99 E-value=3.3e+02 Score=22.17 Aligned_cols=58 Identities=21% Similarity=0.206 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhh
Q psy524 8 CALQIALQTMKDRCQLLQLRLS---NLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHH 77 (111)
Q Consensus 8 yAL~vALqtmkeRC~~LQ~Rl~---~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~h 77 (111)
.+.+-++.+..+.|..+=..+. .+..||..||.. -.+...+..++..|.+++.+|.+-
T Consensus 45 s~~~~v~~~p~~~v~~~~~~~~~~~~~~~en~~Lk~~------------l~~~~~~~~~~~~l~~EN~~Lr~l 105 (284)
T COG1792 45 SPVQSVVAAPFEFVDGVLEFLKSLKDLALENEELKKE------------LAELEQLLEEVESLEEENKRLKEL 105 (284)
T ss_pred hHHHHHHhhHHHHHHhHHHHHHHhHHHHHHhHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677778888866644443 455688888776 235556677777777777777654
No 193
>PRK12794 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=27.80 E-value=32 Score=25.12 Aligned_cols=12 Identities=25% Similarity=0.642 Sum_probs=9.7
Q ss_pred hchHHHHHHHhh
Q psy524 83 TENKQLWTKLSM 94 (111)
Q Consensus 83 ~ENRqLWsrLS~ 94 (111)
..||+||+.|-.
T Consensus 52 ~~NrrLWt~~~~ 63 (122)
T PRK12794 52 HFNRKLWSIFAS 63 (122)
T ss_pred HHHHHHHHHHHH
Confidence 479999998753
No 194
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=27.60 E-value=1.7e+02 Score=18.77 Aligned_cols=42 Identities=19% Similarity=0.329 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHH
Q psy524 22 QLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEML 67 (111)
Q Consensus 22 ~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL 67 (111)
..|+..+..+.+|-..||........ .+.+.+..++-.|+-+
T Consensus 12 ~eL~~~l~~lkkeL~~lR~~~~~~~~----~n~~~i~~~rk~IARi 53 (66)
T PRK00306 12 EELNEKLLELKKELFNLRFQKATGQL----ENTHRLREVRRDIARI 53 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC----cCcHHHHHHHHHHHHH
Confidence 46899999999999999977644321 3567888888888765
No 195
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=27.47 E-value=1.9e+02 Score=19.17 Aligned_cols=28 Identities=29% Similarity=0.430 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhcccc
Q psy524 20 RCQLLQLRLSNLEEENLKLRIDKKKSET 47 (111)
Q Consensus 20 RC~~LQ~Rl~~lEEEN~~LR~~~~~~~~ 47 (111)
.=.++++....+++||.+|+.+..+..+
T Consensus 43 ~l~~l~~~~~~l~~e~~~L~lE~~~l~~ 70 (97)
T PF04999_consen 43 ELQQLEKEIDQLQEENERLRLEIATLSS 70 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3667788888899999999888766443
No 196
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=27.45 E-value=1.9e+02 Score=19.09 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHh
Q psy524 15 QTMKDRCQLLQLRLSNLEEENLKL 38 (111)
Q Consensus 15 qtmkeRC~~LQ~Rl~~lEEEN~~L 38 (111)
.-.|.-.+.++.||-.-|..|..|
T Consensus 21 ~kvk~~n~~~e~kLqeaE~rn~eL 44 (61)
T PF08826_consen 21 TKVKSANLAFESKLQEAEKRNREL 44 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555544
No 197
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=27.32 E-value=2.2e+02 Score=19.95 Aligned_cols=7 Identities=57% Similarity=0.786 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy524 28 LSNLEEE 34 (111)
Q Consensus 28 l~~lEEE 34 (111)
+..++++
T Consensus 82 ~~~l~~~ 88 (118)
T PF13815_consen 82 LEQLEER 88 (118)
T ss_pred HHHHHHH
Confidence 3333333
No 198
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=27.15 E-value=1.4e+02 Score=24.74 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHHhH---HHHhhhHhHhhhchHHHHHHHhhhhh
Q psy524 55 SLVSKLNEEIEMLSQQK---TQLTHHIFMVATENKQLWTKLSMLTE 97 (111)
Q Consensus 55 sd~~~L~ekV~EL~rQK---~QL~~hI~MVa~ENRqLWsrLS~L~k 97 (111)
.++..|.+.+++.+-.| +.|.+ .-=+.+++|++|.++..+.+
T Consensus 138 ~el~~l~~~LE~~~G~~i~~e~L~~-ai~~~n~~r~~~~~~~~l~~ 182 (377)
T TIGR03190 138 AEVQRFRVFLQTLTGKEITDDMLRD-ALAVCDENRRLLRELFDYRK 182 (377)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHc
Confidence 34455555555554443 22333 33467899999999999987
No 199
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=27.02 E-value=1.5e+02 Score=19.55 Aligned_cols=26 Identities=15% Similarity=0.378 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHhHHHHhhhHhHh
Q psy524 56 LVSKLNEEIEMLSQQKTQLTHHIFMV 81 (111)
Q Consensus 56 d~~~L~ekV~EL~rQK~QL~~hI~MV 81 (111)
.++.|-.+|.+|+-+-.||..-|..+
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~l 29 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNAL 29 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666554
No 200
>KOG4763|consensus
Probab=27.01 E-value=1.3e+02 Score=21.15 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccc
Q psy524 13 ALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSE 46 (111)
Q Consensus 13 ALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~ 46 (111)
-|.+.+|||++|-+-+..+++=-.+-+--++++.
T Consensus 15 plt~~rE~C~~~~kcvK~~~~l~~C~~rv~s~s~ 48 (77)
T KOG4763|consen 15 PLTYVRESCKQLPKCVKPLLELQACVKRVQSRSS 48 (77)
T ss_pred HHHHHHHHHHhhHHHhhHHHHHHHHHHHhccccc
Confidence 4678999999999988887665444433333333
No 201
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=26.88 E-value=2.9e+02 Score=21.07 Aligned_cols=28 Identities=29% Similarity=0.376 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q psy524 15 QTMKDRCQLLQLRLSNLEEENLKLRIDK 42 (111)
Q Consensus 15 qtmkeRC~~LQ~Rl~~lEEEN~~LR~~~ 42 (111)
...+..++.|+.+++.++++|-+|....
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~ 112 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKL 112 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567777888888888888888876544
No 202
>KOG0837|consensus
Probab=26.82 E-value=3.2e+02 Score=23.32 Aligned_cols=49 Identities=33% Similarity=0.475 Sum_probs=32.1
Q ss_pred HHHHH-HHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHh
Q psy524 20 RCQLL-QLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIF 79 (111)
Q Consensus 20 RC~~L-Q~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~ 79 (111)
+|-++ =.||+-||+.--.|+.... +-.+++..|+++|+|+ |.+.++||.
T Consensus 220 Kcr~rkLdrisrLEdkv~~lk~~n~--------~L~~~l~~l~~~v~e~---k~~V~~hi~ 269 (279)
T KOG0837|consen 220 KCRKRKLDRISRLEDKVKTLKIYNR--------DLASELSKLKEQVAEL---KQKVMEHIH 269 (279)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhh--------hHHHHHHHHHHHHHHH---HHHHHHHHh
Confidence 45544 5678888876655544321 2346788899999887 446778875
No 203
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=26.76 E-value=21 Score=31.99 Aligned_cols=75 Identities=24% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccc----------------ccccCCchhhHHHHHHHHHHHHHhHHHHhhh
Q psy524 14 LQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSE----------------TNEKEPKESLVSKLNEEIEMLSQQKTQLTHH 77 (111)
Q Consensus 14 LqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~----------------~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~h 77 (111)
++.|++++.-|..+...+|++..+.+.-.+... ....+.-.-++..|++++..|.+.|.+|...
T Consensus 334 vk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e 413 (713)
T PF05622_consen 334 VKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEE 413 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666667777777665444332211 1111122346677888888888888888776
Q ss_pred HhHhhhchHHH
Q psy524 78 IFMVATENKQL 88 (111)
Q Consensus 78 I~MVa~ENRqL 88 (111)
....--.+..|
T Consensus 414 ~~~L~e~~eeL 424 (713)
T PF05622_consen 414 RDSLRETNEEL 424 (713)
T ss_dssp -----------
T ss_pred HHHHHHHHHHh
Confidence 66554434333
No 204
>KOG0161|consensus
Probab=26.66 E-value=3.1e+02 Score=28.88 Aligned_cols=81 Identities=30% Similarity=0.289 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccccccc--------------------CCchhhHHHHHHHHHHHHHhH
Q psy524 12 IALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEK--------------------EPKESLVSKLNEEIEMLSQQK 71 (111)
Q Consensus 12 vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~--------------------~~~~sd~~~L~ekV~EL~rQK 71 (111)
-+=+.+-++|..|+..+...|+++-.|.-.+.+.++... -.-.+++..+++.+.++..+|
T Consensus 985 kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~ 1064 (1930)
T KOG0161|consen 985 KEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQK 1064 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 334456788888888888888888888777765222111 023456677788888888888
Q ss_pred HHHhhhHhHhhhchHHHHHHH
Q psy524 72 TQLTHHIFMVATENKQLWTKL 92 (111)
Q Consensus 72 ~QL~~hI~MVa~ENRqLWsrL 92 (111)
..|..+....-.|=.++=+++
T Consensus 1065 ~el~~~l~kke~El~~l~~k~ 1085 (1930)
T KOG0161|consen 1065 EELDNQLKKKESELSQLQSKL 1085 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 888888777766655554443
No 205
>PRK11519 tyrosine kinase; Provisional
Probab=26.66 E-value=2.8e+02 Score=25.09 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh
Q psy524 9 ALQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKK 43 (111)
Q Consensus 9 AL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~ 43 (111)
+..-|+.-+.+|=..++.+|...|.+-...|...+
T Consensus 264 ~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~ 298 (719)
T PRK11519 264 EASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKD 298 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34567888999999999999999999888887654
No 206
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=26.45 E-value=54 Score=26.73 Aligned_cols=19 Identities=37% Similarity=0.471 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhHhhhhhhc
Q psy524 26 LRLSNLEEENLKLRIDKKK 44 (111)
Q Consensus 26 ~Rl~~lEEEN~~LR~~~~~ 44 (111)
+|++.||+|..+||.+=.+
T Consensus 122 qKIsALEdELs~LRaQIA~ 140 (253)
T PF05308_consen 122 QKISALEDELSRLRAQIAK 140 (253)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5899999999999988654
No 207
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=26.27 E-value=1.7e+02 Score=26.69 Aligned_cols=45 Identities=27% Similarity=0.306 Sum_probs=38.8
Q ss_pred chhhHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHHHHHhhhhh
Q psy524 53 KESLVSKLNEEIEMLSQQKTQLTHHIFMVATENKQLWTKLSMLTE 97 (111)
Q Consensus 53 ~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWsrLS~L~k 97 (111)
...+++.|+++|.+|..+...+...|.+...+-.++...+.....
T Consensus 326 ~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~ 370 (594)
T PF05667_consen 326 QEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEA 370 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999999999999999998888776654
No 208
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=26.22 E-value=3.1e+02 Score=21.29 Aligned_cols=42 Identities=17% Similarity=0.180 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHHHHHhhhhh
Q psy524 56 LVSKLNEEIEMLSQQKTQLTHHIFMVATENKQLWTKLSMLTE 97 (111)
Q Consensus 56 d~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWsrLS~L~k 97 (111)
+...+.+.|.+|.+.=.+|.+|-.+...++..-++.++++..
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks 166 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKS 166 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666666666666666666677777777777765
No 209
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=25.92 E-value=1.4e+02 Score=20.98 Aligned_cols=32 Identities=19% Similarity=0.126 Sum_probs=18.6
Q ss_pred HHHHHhHHHHhhhHhHhhhchHHHHHHHhhhh
Q psy524 65 EMLSQQKTQLTHHIFMVATENKQLWTKLSMLT 96 (111)
Q Consensus 65 ~EL~rQK~QL~~hI~MVa~ENRqLWsrLS~L~ 96 (111)
++|+.++......|.+.-..-++|=++++.|.
T Consensus 4 e~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~ 35 (86)
T PF12958_consen 4 EELQAEIEKAEKKLEQAEHKIKQLENRKKKLE 35 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555555567777777775
No 210
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=25.85 E-value=2.3e+02 Score=19.57 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy524 9 ALQIALQTMKDRCQLLQLRLSNLEEENLKLR 39 (111)
Q Consensus 9 AL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR 39 (111)
.+.-|...++.|...|+.++..++++-..++
T Consensus 84 ~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~ 114 (129)
T cd00584 84 DLEEAIEFLDKKIEELTKQIEKLQKELAKLK 114 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778888888888888888777666553
No 211
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=25.76 E-value=70 Score=20.69 Aligned_cols=20 Identities=45% Similarity=0.493 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhHhhhhhh
Q psy524 24 LQLRLSNLEEENLKLRIDKK 43 (111)
Q Consensus 24 LQ~Rl~~lEEEN~~LR~~~~ 43 (111)
...||+.+|.||-.||..-.
T Consensus 27 a~~rl~~l~~EN~~Lr~eL~ 46 (52)
T PF12808_consen 27 ARKRLSKLEGENRLLRAELE 46 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999987643
No 212
>KOG0804|consensus
Probab=25.45 E-value=1.6e+02 Score=26.88 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhc
Q psy524 17 MKDRCQLLQLRLSNLEEENLKLRIDKKK 44 (111)
Q Consensus 17 mkeRC~~LQ~Rl~~lEEEN~~LR~~~~~ 44 (111)
+-.+-..+|.++.-.+|+|..|+..+-.
T Consensus 387 ~q~k~~k~~kel~~~~E~n~~l~knq~v 414 (493)
T KOG0804|consen 387 LQTKLKKCQKELKEEREENKKLIKNQDV 414 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3345556688999999999999988743
No 213
>PRK11415 hypothetical protein; Provisional
Probab=25.28 E-value=2e+02 Score=19.14 Aligned_cols=46 Identities=17% Similarity=0.245 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHh
Q psy524 13 ALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIF 79 (111)
Q Consensus 13 ALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~ 79 (111)
.|..|.++-..|.++|..+|...- ..+| ..|.+|.++|-.|-+.|.
T Consensus 18 ~F~~L~~~h~~Ld~~I~~lE~~~~----------------~~~d-----~~i~~LKk~KL~LKDeI~ 63 (74)
T PRK11415 18 RFMSLFDKHNKLDHEIARKEGSDG----------------RGYN-----AEVVRMKKQKLQLKDEML 63 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCC----------------CCCH-----HHHHHHHHHHHHhHHHHH
Confidence 455566666666666666554321 0122 268999999999998875
No 214
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=25.12 E-value=83 Score=17.52 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHh
Q psy524 56 LVSKLNEEIEMLSQQ 70 (111)
Q Consensus 56 d~~~L~ekV~EL~rQ 70 (111)
+++.|+.+|..|.+|
T Consensus 2 E~~rlr~rI~dLer~ 16 (23)
T PF04508_consen 2 EMNRLRNRISDLERQ 16 (23)
T ss_pred hHHHHHHHHHHHHHH
Confidence 566788888888765
No 215
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=25.09 E-value=3.3e+02 Score=21.18 Aligned_cols=72 Identities=17% Similarity=0.244 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHH-------HhHHHHhhhHhH
Q psy524 9 ALQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLS-------QQKTQLTHHIFM 80 (111)
Q Consensus 9 AL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~-------rQK~QL~~hI~M 80 (111)
+|..=|.-.++++.-+.+++--.+.|..+++...........+.+..+-+.|..+++.++ +.-..|.+++-+
T Consensus 72 ~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL 150 (194)
T PF15619_consen 72 VLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLEL 150 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556667788888888898888898888887776444333323334444555444443 444445555443
No 216
>KOG4302|consensus
Probab=25.08 E-value=1.2e+02 Score=28.31 Aligned_cols=40 Identities=20% Similarity=0.389 Sum_probs=36.3
Q ss_pred hhhHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHHHHHh
Q psy524 54 ESLVSKLNEEIEMLSQQKTQLTHHIFMVATENKQLWTKLS 93 (111)
Q Consensus 54 ~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWsrLS 93 (111)
.+-+..|..-|.+|.-+|.|...++.=++..=..||++|-
T Consensus 225 ~etl~~L~~~v~~l~~~k~qr~~kl~~l~~~~~~LWn~l~ 264 (660)
T KOG4302|consen 225 DETLDRLDKMVKKLKEEKKQRLQKLQDLRTKLLELWNLLD 264 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3457789999999999999999999999999999999984
No 217
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.03 E-value=2.1e+02 Score=23.24 Aligned_cols=44 Identities=20% Similarity=0.262 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHH
Q psy524 16 TMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLS 68 (111)
Q Consensus 16 tmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~ 68 (111)
+||+|| +.|.-+...+|--...|.+. + .. ..++..++++|++-+
T Consensus 154 vlk~R~-~~Q~~le~k~e~l~k~~~dr--~-~~-----~~ev~~~e~kve~a~ 197 (243)
T cd07666 154 VIKRRD-QIQAELDSKVEALANKKADR--D-LL-----KEEIEKLEDKVECAN 197 (243)
T ss_pred HHHHHH-HHHHHHHHHHHHHHhhhhhH--H-HH-----HHHHHHHHHHHHHHH
Confidence 688997 77888888877776665432 1 11 235555555555543
No 218
>KOG4367|consensus
Probab=25.02 E-value=1.9e+02 Score=26.99 Aligned_cols=56 Identities=23% Similarity=0.206 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhHhhhhh--hcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHhHh
Q psy524 24 LQLRLSNLEEENLKLRIDK--KKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIFMV 81 (111)
Q Consensus 24 LQ~Rl~~lEEEN~~LR~~~--~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~MV 81 (111)
|-.|-..--|+-.+||.-- ...++.+ -+.+-+.+.-+-|+.|++.|.||..||.=-
T Consensus 281 lsdrak~a~e~l~~lr~m~~~iq~n~~e--f~a~l~~q~d~lid~l~~rk~qll~~v~~e 338 (699)
T KOG4367|consen 281 LSDRAKEAKEFLVQLRNMVQQIQENSVE--FEACLVAQCDALIDALNRRKAQLLARVNKE 338 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchh--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3444455567777777533 2333332 345666777788999999999999998543
No 219
>PF12651 RHH_3: Ribbon-helix-helix domain
Probab=24.64 E-value=62 Score=19.50 Aligned_cols=20 Identities=45% Similarity=0.802 Sum_probs=16.0
Q ss_pred hHHHHHHHhhhhhhcCCCcc
Q psy524 85 NKQLWTKLSMLTEETNVPEQ 104 (111)
Q Consensus 85 NRqLWsrLS~L~k~~n~~lg 104 (111)
+..|+.+|..|+++|+.|..
T Consensus 10 ~~el~~~L~~ls~~t~i~~S 29 (44)
T PF12651_consen 10 DKELYEKLKELSEETGIPKS 29 (44)
T ss_pred CHHHHHHHHHHHHHHCCCHH
Confidence 35688999999998888753
No 220
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.58 E-value=6.7e+02 Score=24.50 Aligned_cols=79 Identities=15% Similarity=0.116 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHHHH
Q psy524 12 IALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIFMVATENKQLWTK 91 (111)
Q Consensus 12 vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWsr 91 (111)
-|+..+|+.=......+..++.+-..|+....+... ....+..++++++.+..+-..+...|.-+......+|..
T Consensus 186 k~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~-----ir~~l~~~q~kie~~~~~~~~le~ei~~l~~~~~~l~~~ 260 (1311)
T TIGR00606 186 KALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACE-----IRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHN 260 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555543332211 123444555556666666666665666666656666555
Q ss_pred Hhhh
Q psy524 92 LSML 95 (111)
Q Consensus 92 LS~L 95 (111)
.+.+
T Consensus 261 ~~~~ 264 (1311)
T TIGR00606 261 LSKI 264 (1311)
T ss_pred HHHH
Confidence 4444
No 221
>KOG0709|consensus
Probab=23.81 E-value=45 Score=30.08 Aligned_cols=44 Identities=16% Similarity=0.339 Sum_probs=33.6
Q ss_pred chhhHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHHHHHhhhh
Q psy524 53 KESLVSKLNEEIEMLSQQKTQLTHHIFMVATENKQLWTKLSMLT 96 (111)
Q Consensus 53 ~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWsrLS~L~ 96 (111)
+..-++.|..+|.+-+.|..-|-.+|.-.-.+||-|-..|++|-
T Consensus 270 KkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQ 313 (472)
T KOG0709|consen 270 KKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQ 313 (472)
T ss_pred HhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 44566677777777777777777777777788888888888764
No 222
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.69 E-value=1.2e+02 Score=25.25 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy524 12 IALQTMKDRCQLLQLRLSNLEEE 34 (111)
Q Consensus 12 vALqtmkeRC~~LQ~Rl~~lEEE 34 (111)
.||+-|+.+-.+||.||..++-+
T Consensus 55 ~ALk~a~~~i~eLe~ri~~lq~~ 77 (233)
T COG3416 55 QALKKASTQIKELEKRIAILQAG 77 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 47889999999999999999876
No 223
>PRK02119 hypothetical protein; Provisional
Probab=23.64 E-value=2.3e+02 Score=18.84 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q psy524 16 TMKDRCQLLQLRLSNLEEENLK 37 (111)
Q Consensus 16 tmkeRC~~LQ~Rl~~lEEEN~~ 37 (111)
.|-+|-..|+.|++=.|.--..
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~ 27 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEE 27 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666655544333
No 224
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=23.60 E-value=3e+02 Score=22.24 Aligned_cols=29 Identities=21% Similarity=0.285 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy524 13 ALQTMKDRCQLLQLRLSNLEEENLKLRID 41 (111)
Q Consensus 13 ALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~ 41 (111)
|++-+.++-..++.++...|.+-...|..
T Consensus 171 a~~fl~~ql~~~~~~l~~ae~~l~~fr~~ 199 (362)
T TIGR01010 171 TIAFAENEVKEAEQRLNATKAELLKYQIK 199 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555556666666666555555443
No 225
>KOG4687|consensus
Probab=23.44 E-value=2.7e+02 Score=24.46 Aligned_cols=29 Identities=28% Similarity=0.241 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhcc
Q psy524 16 TMKDRCQLLQLRLSNLEEENLKLRIDKKKS 45 (111)
Q Consensus 16 tmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~ 45 (111)
-++.|-+.||.|++.+|-|-. |=..|+++
T Consensus 48 ~~a~~aETLeln~ealere~e-Llaa~gc~ 76 (389)
T KOG4687|consen 48 GLAARAETLELNLEALERELE-LLAACGCD 76 (389)
T ss_pred HHHHHHHHHHHHHHHHHhhhH-HHHhcCCC
Confidence 356788999999999987644 43455543
No 226
>PRK11032 hypothetical protein; Provisional
Probab=23.26 E-value=88 Score=24.13 Aligned_cols=39 Identities=23% Similarity=0.602 Sum_probs=30.5
Q ss_pred HHHHHHHHH----HhHHHHhhhHhHhhhchHHHHHHHhhhhhhc
Q psy524 60 LNEEIEMLS----QQKTQLTHHIFMVATENKQLWTKLSMLTEET 99 (111)
Q Consensus 60 L~ekV~EL~----rQK~QL~~hI~MVa~ENRqLWsrLS~L~k~~ 99 (111)
|+..++++. .....|.+-+||...||+ ||..|+.|+-.|
T Consensus 55 lkRDL~ef~~~~~~~~~~~~~s~~~~~i~~s-lw~~L~~ItDrT 97 (160)
T PRK11032 55 VRRDLEEFARSYEESKEEFSDSVFMRVIKES-LWQELADITDKT 97 (160)
T ss_pred HHHHHHHHHHHHHhccccccccHHHHHHHHH-HHHHHHHHHHHh
Confidence 666777764 455678889999999986 799999998643
No 227
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=22.80 E-value=1e+02 Score=20.38 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHhHhhhhhh
Q psy524 22 QLLQLRLSNLEEENLKLRIDKK 43 (111)
Q Consensus 22 ~~LQ~Rl~~lEEEN~~LR~~~~ 43 (111)
..|+.||+.||.|-.|++..-.
T Consensus 24 ~EL~~RIa~L~aEI~R~~~~~~ 45 (59)
T PF06698_consen 24 EELEERIALLEAEIARLEAAIA 45 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999987654
No 228
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=22.60 E-value=4.5e+02 Score=21.85 Aligned_cols=31 Identities=29% Similarity=0.391 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy524 8 CALQIALQTMKDRCQLLQLRLSNLEEENLKL 38 (111)
Q Consensus 8 yAL~vALqtmkeRC~~LQ~Rl~~lEEEN~~L 38 (111)
-++..|++.+.+++++++..+.+++.+...|
T Consensus 165 ~~l~~ai~~~~~~~~~~~~~l~~l~~de~~L 195 (267)
T PF10234_consen 165 KALKEAIKAVQQQLQQTQQQLNNLASDEANL 195 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678889999999999999999887665544
No 229
>KOG3501|consensus
Probab=22.56 E-value=1.1e+02 Score=23.06 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHhHHHHhhhHhHhh
Q psy524 56 LVSKLNEEIEMLSQQKTQLTHHIFMVA 82 (111)
Q Consensus 56 d~~~L~ekV~EL~rQK~QL~~hI~MVa 82 (111)
..-+++++|++|+++|+=|+..+.=+-
T Consensus 75 k~k~see~IeaLqkkK~YlEk~v~eaE 101 (114)
T KOG3501|consen 75 KMKSSEEKIEALQKKKTYLEKTVSEAE 101 (114)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688999999999999998876443
No 230
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=22.15 E-value=2.6e+02 Score=18.81 Aligned_cols=19 Identities=21% Similarity=0.468 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhHhhhhh
Q psy524 24 LQLRLSNLEEENLKLRIDK 42 (111)
Q Consensus 24 LQ~Rl~~lEEEN~~LR~~~ 42 (111)
....++.|..||--||+--
T Consensus 5 qe~~i~~L~KENF~LKLrI 23 (75)
T PF07989_consen 5 QEEQIDKLKKENFNLKLRI 23 (75)
T ss_pred HHHHHHHHHHhhhhHHHHH
Confidence 3556777778877766544
No 231
>KOG4674|consensus
Probab=21.98 E-value=5.1e+02 Score=27.39 Aligned_cols=82 Identities=27% Similarity=0.275 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhc------cccccc-------CCchhhHHHHHHHHHHHHHhHHHHhhhHhHhh-
Q psy524 17 MKDRCQLLQLRLSNLEEENLKLRIDKKK------SETNEK-------EPKESLVSKLNEEIEMLSQQKTQLTHHIFMVA- 82 (111)
Q Consensus 17 mkeRC~~LQ~Rl~~lEEEN~~LR~~~~~------~~~~~~-------~~~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa- 82 (111)
+.-|-..|++|+..++.++..+|..-.. ..+... +...+.++.|+.--+|++.||.+|++.+--+.
T Consensus 57 ~ekK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ 136 (1822)
T KOG4674|consen 57 LEKKILRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKA 136 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ------hchHHHHHHHhhhhhhc
Q psy524 83 ------TENKQLWTKLSMLTEET 99 (111)
Q Consensus 83 ------~ENRqLWsrLS~L~k~~ 99 (111)
.+|..|=..|+.+.+ +
T Consensus 137 ele~l~~~n~~l~~ql~ss~~-~ 158 (1822)
T KOG4674|consen 137 ELEALESENKDLNDQLKSSTK-T 158 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-H
No 232
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=21.92 E-value=1.6e+02 Score=25.07 Aligned_cols=42 Identities=21% Similarity=0.166 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHHHHHhhhhh
Q psy524 56 LVSKLNEEIEMLSQQKTQLTHHIFMVATENKQLWTKLSMLTE 97 (111)
Q Consensus 56 d~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWsrLS~L~k 97 (111)
....+.++..++.++..+|..++.....+..+++..+.++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (398)
T PTZ00454 16 TERDLYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKE 57 (398)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666666666666666666655554
No 233
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=21.91 E-value=46 Score=23.38 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=27.1
Q ss_pred hHhHhhhchHHHHHHHhhhhhhcCCCcccccc
Q psy524 77 HIFMVATENKQLWTKLSMLTEETNVPEQSINL 108 (111)
Q Consensus 77 hI~MVa~ENRqLWsrLS~L~k~~n~~lg~~~~ 108 (111)
+++.||+-=-|||.-|.......+.|.|++-|
T Consensus 1 pf~YvS~SPwnly~~l~~Fl~~~~~P~G~~~L 32 (100)
T PF09949_consen 1 PFFYVSNSPWNLYPFLRDFLRRNGFPAGPLLL 32 (100)
T ss_pred CEEEEcCCHHHHHHHHHHHHHhcCCCCCceEc
Confidence 46778888899999999999866799999765
No 234
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=21.61 E-value=6.5e+02 Score=23.28 Aligned_cols=76 Identities=18% Similarity=0.177 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHhHhhh----
Q psy524 9 ALQIALQTMKDRCQLLQLRLSNLEEE-NLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIFMVAT---- 83 (111)
Q Consensus 9 AL~vALqtmkeRC~~LQ~Rl~~lEEE-N~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~---- 83 (111)
++.-+.++|-.|...+-.+|..++++ |..++ ..-.+++.|-++|++|++|-.+..-. +=-++
T Consensus 131 ~vl~~A~~La~~fn~~~~~L~~l~~~vn~qI~------------~~V~~IN~l~~qIA~LN~qI~~~~~~-G~~~NdLlD 197 (676)
T PRK05683 131 LLLTQAQGLSKRFNSLSSQLNQQNSNINSQLS------------AMTDQVNNLTTSIASYNKQIAQASAS-GATPNDLLD 197 (676)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhhcC-CCCchHhHH
Confidence 33444556666666666666666544 22222 12457888888999998876543210 00000
Q ss_pred chHHHHHHHhhhhh
Q psy524 84 ENKQLWTKLSMLTE 97 (111)
Q Consensus 84 ENRqLWsrLS~L~k 97 (111)
+=-+|=..||++..
T Consensus 198 qRD~Ll~eLS~~v~ 211 (676)
T PRK05683 198 ARDEAVRQLNELVG 211 (676)
T ss_pred HHHHHHHHHHhhcC
Confidence 11346677777766
No 235
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=21.58 E-value=1.3e+02 Score=22.45 Aligned_cols=48 Identities=19% Similarity=0.304 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhHhhhhhhccccccc--CCchhhHHHHHHHHHHHHHhHH
Q psy524 25 QLRLSNLEEENLKLRIDKKKSETNEK--EPKESLVSKLNEEIEMLSQQKT 72 (111)
Q Consensus 25 Q~Rl~~lEEEN~~LR~~~~~~~~~~~--~~~~sd~~~L~ekV~EL~rQK~ 72 (111)
..++..+++|...++.+-........ .....|++.|+.+|++|+....
T Consensus 19 K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 19 KAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 45666667777666665543111111 1234688899999999987655
No 236
>PF00992 Troponin: Troponin; InterPro: IPR001978 The troponin (Tn) complex regulates Ca2+ induced muscle contraction. Tn contains three subunits, Ca2+ binding (TnC), inhibitory (TnI), and tropomyosin binding (TnT). This family includes troponin T and troponin I. Troponin I binds to actin and troponin T binds to tropomyosin [, , ].; PDB: 1J1D_C 1MXL_I 1LXF_I 2KRD_I 1J1E_F 2L1R_B 2KGB_I 1YTZ_I 1YV0_I 1VDJ_A ....
Probab=21.57 E-value=1.5e+02 Score=21.78 Aligned_cols=25 Identities=32% Similarity=0.578 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHh
Q psy524 14 LQTMKDRCQLLQLRLSNLEEENLKL 38 (111)
Q Consensus 14 LqtmkeRC~~LQ~Rl~~lEEEN~~L 38 (111)
.+-+.+.|..|-.|+..+|+|--.+
T Consensus 45 ~~eL~~~~k~lh~ri~~leeEryd~ 69 (132)
T PF00992_consen 45 RAELQELCKELHERIDKLEEERYDL 69 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788999999999999997766
No 237
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=21.56 E-value=5e+02 Score=23.58 Aligned_cols=35 Identities=14% Similarity=0.321 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHH
Q psy524 54 ESLVSKLNEEIEMLSQQKTQLTHHIFMVATENKQLW 89 (111)
Q Consensus 54 ~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLW 89 (111)
..-+..|..++++.+.|-.+|...+.=++ -||.=|
T Consensus 384 ~~~l~~le~~l~~~~~~~~~L~~~~~~l~-~~r~dW 418 (656)
T PRK06975 384 DSQFAQLDGKLADAQSAQQALEQQYQDLS-RNRDDW 418 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cChhhh
Confidence 45666788888888888888877775444 455555
No 238
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=21.52 E-value=1.6e+02 Score=20.76 Aligned_cols=28 Identities=14% Similarity=0.291 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHHHhHHHHhhhHhHhh
Q psy524 55 SLVSKLNEEIEMLSQQKTQLTHHIFMVA 82 (111)
Q Consensus 55 sd~~~L~ekV~EL~rQK~QL~~hI~MVa 82 (111)
.++++|.++|..|+-+-.|+..-|.-.-
T Consensus 24 ~kvdqLss~V~~L~~kvdql~~dv~~a~ 51 (85)
T PRK09973 24 QKVNQLASNVQTLNAKIARLEQDMKALR 51 (85)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888888887776543
No 239
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=21.37 E-value=1.4e+02 Score=21.10 Aligned_cols=20 Identities=35% Similarity=0.584 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy524 12 IALQTMKDRCQLLQLRLSNL 31 (111)
Q Consensus 12 vALqtmkeRC~~LQ~Rl~~l 31 (111)
-.++..|.||..|-.-|+-+
T Consensus 73 p~y~~~K~Rc~yL~~KL~HI 92 (101)
T PF07303_consen 73 PNYQEKKKRCEYLHNKLSHI 92 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHH
Confidence 46788999999998777643
No 240
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=21.26 E-value=3.7e+02 Score=20.35 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy524 11 QIALQTMKDRCQLLQLRLSNLEEENLKL 38 (111)
Q Consensus 11 ~vALqtmkeRC~~LQ~Rl~~lEEEN~~L 38 (111)
--|...++.||..|-+.+..|+++-..|
T Consensus 93 ~eAie~l~k~~~~l~~~~~~l~~~l~~l 120 (145)
T COG1730 93 DEAIEFLKKRIEELEKAIEKLQQALAEL 120 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999998888887766555
No 241
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=21.19 E-value=2.3e+02 Score=17.83 Aligned_cols=43 Identities=21% Similarity=0.353 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHH
Q psy524 22 QLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLS 68 (111)
Q Consensus 22 ~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~ 68 (111)
..|+..+..+.+|-..||.+...... .+.+.+..++-.|+-+.
T Consensus 10 ~eL~~~l~elk~eL~~Lr~q~~~~~l----~n~~~ir~~Rr~IARi~ 52 (58)
T PF00831_consen 10 EELQEKLEELKKELFNLRFQKATGQL----ENPHRIREIRRDIARIL 52 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSS----SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc----ccccHHHHHHHHHHHHH
Confidence 46888999999999999998776322 24678888888887653
No 242
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=21.18 E-value=2.7e+02 Score=18.67 Aligned_cols=29 Identities=34% Similarity=0.453 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy524 10 LQIALQTMKDRCQLLQLRLSNLEEENLKL 38 (111)
Q Consensus 10 L~vALqtmkeRC~~LQ~Rl~~lEEEN~~L 38 (111)
+.-|...++.|...|+..+..++++-..+
T Consensus 75 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~ 103 (120)
T PF02996_consen 75 LEEAIEFLKKRIKELEEQLEKLEKELAEL 103 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666666666665555544444
No 243
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=20.98 E-value=4.6e+02 Score=21.29 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy524 9 ALQIALQTMKDRCQLLQLRLSNLEEENL 36 (111)
Q Consensus 9 AL~vALqtmkeRC~~LQ~Rl~~lEEEN~ 36 (111)
.|...++.++|.-..+++||..+++...
T Consensus 3 ~l~~l~~pl~e~l~~~~~~l~~~~~~~~ 30 (304)
T PF02646_consen 3 QLEQLLKPLKEQLEKFEKRLEESFEQRS 30 (304)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788899999999999988887654
No 244
>PHA02562 46 endonuclease subunit; Provisional
Probab=20.97 E-value=5.1e+02 Score=21.80 Aligned_cols=63 Identities=11% Similarity=0.196 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhccc---ccccCCchhhHHHHHHHHHHHHHhHHHHhhhHh
Q psy524 17 MKDRCQLLQLRLSNLEEENLKLRIDKKKSE---TNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIF 79 (111)
Q Consensus 17 mkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~---~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~ 79 (111)
.|++...++..+..++.+-..+........ .........++..+++++.++.++..++..++.
T Consensus 172 ~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~ 237 (562)
T PHA02562 172 NKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIE 237 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555665555555555544444332222100 000001123456666666666666666655554
No 245
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=20.84 E-value=4.7e+02 Score=21.35 Aligned_cols=45 Identities=11% Similarity=0.237 Sum_probs=31.5
Q ss_pred chhhHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHHHHHhhhhh
Q psy524 53 KESLVSKLNEEIEMLSQQKTQLTHHIFMVATENKQLWTKLSMLTE 97 (111)
Q Consensus 53 ~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWsrLS~L~k 97 (111)
...++...+.++++|+.+...+..-|.=.+.+=..+=..+..+.+
T Consensus 221 ~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~ 265 (325)
T PF08317_consen 221 QKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEK 265 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777788888888888887777766666666555544
No 246
>PF04521 Viral_P18: ssRNA positive strand viral 18kD cysteine rich protein; InterPro: IPR007609 This family represents the 18kDa cysteine-rich protein from ssRNA positive strand viruses.
Probab=20.75 E-value=1.6e+02 Score=22.17 Aligned_cols=28 Identities=32% Similarity=0.465 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHHHhHHHHhhhHhHhh
Q psy524 55 SLVSKLNEEIEMLSQQKTQLTHHIFMVA 82 (111)
Q Consensus 55 sd~~~L~ekV~EL~rQK~QL~~hI~MVa 82 (111)
.++..++.+++.|+++-++|.-+|.-++
T Consensus 72 ~~l~~~~~~L~~Le~r~e~Lk~~~~~~~ 99 (120)
T PF04521_consen 72 AQLSDLNLELEKLERREEQLKTQIQVLT 99 (120)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667778888888888888877776543
No 247
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=20.71 E-value=1.6e+02 Score=20.72 Aligned_cols=41 Identities=24% Similarity=0.298 Sum_probs=29.7
Q ss_pred HHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHh
Q psy524 27 RLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQ 70 (111)
Q Consensus 27 Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQ 70 (111)
+|+-.--||.+||..-.+..+-. ..++-+.+-+.|++|..|
T Consensus 45 evtr~A~EN~rL~ee~rrl~~f~---~~gerE~l~~eis~L~~~ 85 (86)
T PF12711_consen 45 EVTRFAMENIRLREELRRLQSFY---VEGEREMLLQEISELRDQ 85 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHhh
Confidence 67777889999998877754443 345667788888888654
No 248
>PRK04406 hypothetical protein; Provisional
Probab=20.68 E-value=2.8e+02 Score=18.64 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhHHHHhhhHhHh
Q psy524 57 VSKLNEEIEMLSQQKTQLTHHIFMV 81 (111)
Q Consensus 57 ~~~L~ekV~EL~rQK~QL~~hI~MV 81 (111)
++.|.+-|.+.+++-..|..++.++
T Consensus 27 Ie~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 27 IEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555544
No 249
>PF15384 DUF4610: Domain of unknown function (DUF4610)
Probab=20.67 E-value=1.1e+02 Score=24.74 Aligned_cols=27 Identities=30% Similarity=0.334 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy524 9 ALQIALQTMKDRCQLLQLRLSNLEEEN 35 (111)
Q Consensus 9 AL~vALqtmkeRC~~LQ~Rl~~lEEEN 35 (111)
=||..+=-|.|||-.|.+||+..|++-
T Consensus 115 ~Lq~L~f~lAe~v~~Le~~Laa~~~~a 141 (197)
T PF15384_consen 115 RLQALTFRLAERVCSLERRLAAVEETA 141 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 366677779999999999999999884
No 250
>PRK11637 AmiB activator; Provisional
Probab=20.49 E-value=4.8e+02 Score=21.81 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy524 17 MKDRCQLLQLRLSNLEEEN 35 (111)
Q Consensus 17 mkeRC~~LQ~Rl~~lEEEN 35 (111)
.+++=.++++.+...+.+-
T Consensus 45 ~~~~l~~l~~qi~~~~~~i 63 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSV 63 (428)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 251
>PF15278 Sec3_C_2: Sec3 exocyst complex subunit
Probab=20.46 E-value=1.4e+02 Score=21.43 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHhHHHHhh
Q psy524 58 SKLNEEIEMLSQQKTQLTH 76 (111)
Q Consensus 58 ~~L~ekV~EL~rQK~QL~~ 76 (111)
...++.|++|-+||.|+.+
T Consensus 28 ~s~~~~VE~L~~~~~~~~~ 46 (86)
T PF15278_consen 28 ESMISNVENLFRQKMQAQN 46 (86)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4577888888888887754
No 252
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=20.46 E-value=92 Score=22.77 Aligned_cols=20 Identities=15% Similarity=0.034 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy524 5 TSNCALQIALQTMKDRCQLL 24 (111)
Q Consensus 5 ~s~yAL~vALqtmkeRC~~L 24 (111)
++.||-++|-+.+-++|..+
T Consensus 43 ~TpyAAq~aa~~~~~~~~~~ 62 (114)
T TIGR03628 43 SSPYAAMQAAGRAAEKAKER 62 (114)
T ss_pred CCHHHHHHHHHHHHHHHHHc
Confidence 56899999999999999875
No 253
>COG5502 Uncharacterized conserved protein [Function unknown]
Probab=20.36 E-value=1e+02 Score=23.63 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy524 5 TSNCALQIALQTMKDRC 21 (111)
Q Consensus 5 ~s~yAL~vALqtmkeRC 21 (111)
.++-++.+-|+|||+|-
T Consensus 27 ~A~~~~~avL~tlRdrL 43 (135)
T COG5502 27 DAYRITRAVLRTLRDRL 43 (135)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 45778999999999984
No 254
>PLN02678 seryl-tRNA synthetase
Probab=20.32 E-value=3e+02 Score=24.17 Aligned_cols=50 Identities=14% Similarity=0.130 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHHHHHhhhhhhcCCCccc
Q psy524 55 SLVSKLNEEIEMLSQQKTQLTHHIFMVATENKQLWTKLSMLTEETNVPEQS 105 (111)
Q Consensus 55 sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWsrLS~L~k~~n~~lg~ 105 (111)
.+...|.+++.+|..+-..|...+..+-.+=..++.+|--|.. -.+|.|.
T Consensus 71 ~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi~~-~~VP~G~ 120 (448)
T PLN02678 71 EDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNLVH-DSVPVSN 120 (448)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-ccCCCCC
Confidence 3456677788888888888888888888777889999998888 7888883
No 255
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=20.31 E-value=4e+02 Score=22.86 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHHHhHHHHhh
Q psy524 56 LVSKLNEEIEMLSQQKTQLTH 76 (111)
Q Consensus 56 d~~~L~ekV~EL~rQK~QL~~ 76 (111)
-|+.|..+++.|...|-.|..
T Consensus 179 lvN~L~Kqm~~l~~eKr~Lq~ 199 (310)
T PF09755_consen 179 LVNRLWKQMDKLEAEKRRLQE 199 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443333
No 256
>KOG1655|consensus
Probab=20.30 E-value=5e+02 Score=21.46 Aligned_cols=68 Identities=24% Similarity=0.346 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccccccc--CCchhhHHHHHHHHHHHHHhHHHHhhh
Q psy524 9 ALQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEK--EPKESLVSKLNEEIEMLSQQKTQLTHH 77 (111)
Q Consensus 9 AL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~--~~~~sd~~~L~ekV~EL~rQK~QL~~h 77 (111)
-|+-|...|-.|-..+..+|+.|+-|-+.+|.+-.+--.++. .-++-.+..|+++ -.+.-||.+|-.|
T Consensus 16 sL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQK-K~yE~q~d~L~~Q 85 (218)
T KOG1655|consen 16 SLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQK-KMYENQKDSLDQQ 85 (218)
T ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 478899999999999999999999999999987765333332 1223334444432 2334445555443
No 257
>PF12507 HCMV_UL139: Human Cytomegalovirus UL139 protein; InterPro: IPR021042 This entry represents eukaryotic and viral proteins of approximately 140 amino acids in length. The UL139 product shares sequence homology with human CD24, a signal transducer modulating B-cell activation responses, and the sequences in the G1c variant of UL139 contained a specific attachment site of prokaryotic membrane lipoprotein lipid [].
Probab=20.28 E-value=3.9e+02 Score=20.19 Aligned_cols=61 Identities=16% Similarity=0.254 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHH
Q psy524 8 CALQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQ 69 (111)
Q Consensus 8 yAL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~r 69 (111)
.|=+++..+|=-||-.|-++++..--.-..+|..--... ..-.+..-++.+++..|+|+.+
T Consensus 19 aakla~ir~~e~rcl~L~rKia~~~~~~l~~rs~i~~~~-~k~~~~~~~lrs~~geveE~e~ 79 (121)
T PF12507_consen 19 AAKLANIRRCEQRCLLLERKIADQNFKILALRSEIEALD-AKYHSDSQQLRSCCGEVEEAEE 79 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-hhhcchhhhhHhhhccchHHHH
Confidence 455677899999999999999976555555554322111 1112334566667766666643
No 258
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=20.27 E-value=5.2e+02 Score=21.65 Aligned_cols=33 Identities=9% Similarity=0.155 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh
Q psy524 11 QIALQTMKDRCQLLQLRLSNLEEENLKLRIDKK 43 (111)
Q Consensus 11 ~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~ 43 (111)
.-|.+.+.++=..++.++...|++-...|...+
T Consensus 160 ~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~ 192 (498)
T TIGR03007 160 DSAQRFIDEQIKTYEKKLEAAENRLKAFKQENG 192 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 357788888999999999999998888876543
No 259
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=20.14 E-value=2.7e+02 Score=24.95 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHH
Q psy524 23 LLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQ 69 (111)
Q Consensus 23 ~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~r 69 (111)
.+.+-|..||+.-..||.-...+. .+-..++..|++++.+|.+
T Consensus 77 ~fe~pi~ele~ki~el~~~~~~~~----~~~~~ei~~l~~~~~~~~~ 119 (431)
T PLN03230 77 PFEKPIVDLENRIDEVRELANKTG----VDFSAQIAELEERYDQVRR 119 (431)
T ss_pred chhhHHHHHHHHHHHHHhhhhccc----ccHHHHHHHHHHHHHHHHH
Confidence 356778888888888877533221 1234556666666666655
No 260
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=20.07 E-value=1.6e+02 Score=20.83 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhHHHHhhhH
Q psy524 57 VSKLNEEIEMLSQQKTQLTHHI 78 (111)
Q Consensus 57 ~~~L~ekV~EL~rQK~QL~~hI 78 (111)
...|.++|++|+..+..|.+.+
T Consensus 88 ~~~l~~~i~~L~~~~~~L~~~~ 109 (127)
T TIGR02047 88 ISHVRARIIKLQALIEQLVDLR 109 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666655543
No 261
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=20.06 E-value=3.8e+02 Score=20.52 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhc
Q psy524 8 CALQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKK 44 (111)
Q Consensus 8 yAL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~ 44 (111)
.-+|+=|.++++|=.+|+.|-..||-.-..|...-.+
T Consensus 87 ~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tier 123 (159)
T PF05384_consen 87 HELQVRLAMLREREKQLRERRDELERRLRNLEETIER 123 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999877777655444
Done!