Query psy524
Match_columns 111
No_of_seqs 22 out of 24
Neff 2.9
Searched_HMMs 29240
Date Fri Aug 16 21:18:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy524.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/524hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jnm_A Proto-oncogene C-JUN; B 94.2 0.067 2.3E-06 33.5 4.2 23 17-39 20-42 (62)
2 3s9g_A Protein hexim1; cyclin 94.0 0.22 7.6E-06 35.6 7.0 54 18-79 36-89 (104)
3 1t2k_D Cyclic-AMP-dependent tr 93.7 0.22 7.7E-06 30.8 6.0 23 17-39 20-42 (61)
4 3s4r_A Vimentin; alpha-helix, 93.7 0.32 1.1E-05 32.9 7.2 78 14-91 11-92 (93)
5 3o0z_A RHO-associated protein 93.5 0.54 1.8E-05 35.6 8.8 91 8-99 44-134 (168)
6 2wt7_A Proto-oncogene protein 92.1 0.44 1.5E-05 29.8 5.7 24 17-40 21-44 (63)
7 1dip_A Delta-sleep-inducing pe 91.9 0.08 2.8E-06 36.2 2.2 46 1-46 2-49 (78)
8 3hnw_A Uncharacterized protein 90.9 1.3 4.3E-05 31.9 7.8 69 7-77 57-132 (138)
9 1hjb_A Ccaat/enhancer binding 90.3 0.82 2.8E-05 31.0 6.0 32 9-40 26-57 (87)
10 1ci6_A Transcription factor AT 89.7 1.2 4.2E-05 28.0 6.0 26 15-40 19-44 (63)
11 2oqq_A Transcription factor HY 85.9 1.3 4.6E-05 27.1 4.3 33 57-89 5-37 (42)
12 1a93_B MAX protein, coiled coi 85.2 1.1 3.7E-05 26.4 3.5 23 57-79 9-31 (34)
13 1gu4_A CAAT/enhancer binding p 84.3 6.3 0.00021 26.1 7.4 34 7-40 24-57 (78)
14 1gd2_E Transcription factor PA 83.2 2.7 9.1E-05 27.5 5.1 51 7-72 16-67 (70)
15 2dgc_A Protein (GCN4); basic d 82.9 1.8 6.1E-05 27.4 4.1 23 18-40 29-51 (63)
16 1wlq_A Geminin; coiled-coil; 2 82.7 2.5 8.4E-05 29.0 5.0 32 9-40 32-66 (83)
17 2oqq_A Transcription factor HY 81.5 3.6 0.00012 25.2 4.9 28 13-40 11-38 (42)
18 1ik9_A DNA repair protein XRCC 81.2 4.5 0.00015 30.8 6.5 43 22-79 135-177 (213)
19 1jnm_A Proto-oncogene C-JUN; B 80.9 1.9 6.6E-05 26.6 3.7 33 56-88 23-55 (62)
20 1uii_A Geminin; human, DNA rep 79.7 5.7 0.0002 27.1 6.0 7 2-8 23-29 (83)
21 3a7p_A Autophagy protein 16; c 79.3 17 0.00059 27.1 10.0 71 7-92 63-133 (152)
22 1dh3_A Transcription factor CR 79.3 2.4 8.3E-05 26.1 3.7 27 16-42 19-45 (55)
23 3o0z_A RHO-associated protein 78.8 16 0.00054 27.5 8.8 61 7-75 71-138 (168)
24 2fup_A Hypothetical protein PA 78.7 11 0.00039 25.4 7.3 81 15-99 10-105 (157)
25 1t2k_D Cyclic-AMP-dependent tr 78.2 5.5 0.00019 24.4 5.1 33 56-88 23-55 (61)
26 1nkp_A C-MYC, MYC proto-oncoge 77.2 13 0.00044 24.5 8.6 72 26-97 16-87 (88)
27 2zxx_A Geminin; coiled-coil, c 75.4 5.3 0.00018 27.0 4.8 32 9-40 28-62 (79)
28 1ci6_A Transcription factor AT 75.0 5.4 0.00018 24.9 4.5 33 56-88 24-56 (63)
29 1go4_E MAD1 (mitotic arrest de 74.7 16 0.00054 25.4 7.3 22 58-79 71-92 (100)
30 2v71_A Nuclear distribution pr 72.0 23 0.0008 26.9 8.2 66 10-79 47-112 (189)
31 1ytz_T Troponin T; muscle, THI 70.2 7.9 0.00027 27.0 4.8 45 15-67 45-89 (107)
32 1hjb_A Ccaat/enhancer binding 67.5 10 0.00034 25.6 4.8 41 57-97 38-78 (87)
33 2dfs_A Myosin-5A; myosin-V, in 67.5 15 0.00052 33.6 7.3 11 62-72 1023-1033(1080)
34 1j1d_B Troponin T, TNT; THIN f 67.0 11 0.00037 26.3 5.0 46 14-67 44-89 (106)
35 2wt7_A Proto-oncogene protein 67.0 20 0.00067 22.1 6.7 21 56-76 38-58 (63)
36 1dip_A Delta-sleep-inducing pe 66.7 3.6 0.00012 28.1 2.4 31 53-90 13-43 (78)
37 2wq1_A General control protein 66.7 7 0.00024 22.8 3.3 22 58-79 3-24 (33)
38 1gu4_A CAAT/enhancer binding p 66.1 6.4 0.00022 26.1 3.5 38 57-94 38-75 (78)
39 3m0a_A TNF receptor-associated 65.7 20 0.00069 21.8 6.5 59 17-80 3-65 (66)
40 2l5g_A GPS2 protein, G protein 65.6 12 0.00042 22.4 4.3 21 55-75 15-35 (38)
41 2v66_B Nuclear distribution pr 65.5 20 0.00068 25.3 6.2 62 20-85 4-65 (111)
42 1j1d_C Troponin I, TNI; THIN f 65.2 20 0.00068 25.9 6.3 47 14-68 60-106 (133)
43 2eqb_B RAB guanine nucleotide 65.1 26 0.00088 24.3 6.6 72 13-87 6-77 (97)
44 2yy0_A C-MYC-binding protein; 62.7 9.2 0.00031 23.5 3.6 28 52-79 16-43 (53)
45 2w83_C C-JUN-amino-terminal ki 60.7 9.5 0.00033 25.8 3.6 46 26-79 9-54 (77)
46 2jee_A YIIU; FTSZ, septum, coi 59.3 14 0.00048 24.9 4.3 55 10-79 11-65 (81)
47 1kd8_B GABH BLL, GCN4 acid bas 58.5 12 0.00041 22.2 3.3 23 57-79 3-25 (36)
48 3oja_B Anopheles plasmodium-re 56.9 74 0.0025 25.4 8.9 33 10-42 461-493 (597)
49 1fxk_C Protein (prefoldin); ar 56.7 42 0.0014 22.5 6.8 33 9-41 85-117 (133)
50 1j1e_C Troponin I, TNI; THIN f 55.2 37 0.0013 25.8 6.5 47 14-68 60-106 (180)
51 1dh3_A Transcription factor CR 54.4 18 0.00063 22.0 3.9 25 56-80 23-47 (55)
52 2wvr_A Geminin; DNA replicatio 53.4 23 0.00079 27.8 5.2 33 9-41 109-144 (209)
53 2jee_A YIIU; FTSZ, septum, coi 52.3 51 0.0017 22.2 9.5 31 59-89 24-61 (81)
54 2xdj_A Uncharacterized protein 51.1 21 0.0007 23.7 4.0 35 59-93 31-65 (83)
55 3tnu_A Keratin, type I cytoske 49.9 33 0.0011 23.6 5.1 77 14-90 33-112 (131)
56 3tnu_B Keratin, type II cytosk 48.7 53 0.0018 22.4 6.0 77 14-90 31-110 (129)
57 3m48_A General control protein 48.3 17 0.00058 21.2 2.8 22 58-79 3-24 (33)
58 3hhm_B NISH2 P85alpha; PI3KCA, 47.9 89 0.003 25.3 8.1 41 56-96 206-246 (373)
59 4fi5_A Nucleoprotein; structur 47.8 21 0.00072 25.6 3.9 56 21-79 24-90 (113)
60 2hy6_A General control protein 46.6 23 0.00078 20.7 3.2 23 57-79 3-25 (34)
61 3e98_A GAF domain of unknown f 46.2 30 0.001 26.4 4.8 37 57-97 74-110 (252)
62 2aze_B Transcription factor E2 45.9 29 0.001 23.7 4.2 34 55-88 6-39 (106)
63 1kd8_A GABH AIV, GCN4 acid bas 45.6 24 0.00081 20.9 3.2 23 57-79 3-25 (36)
64 2dgc_A Protein (GCN4); basic d 44.9 33 0.0011 21.4 4.1 26 55-80 30-55 (63)
65 3c3g_A Alpha/beta peptide with 44.6 27 0.00094 20.3 3.3 22 58-79 3-24 (33)
66 2oxj_A Hybrid alpha/beta pepti 44.2 26 0.0009 20.5 3.2 21 58-78 4-24 (34)
67 3q0x_A Centriole protein; cent 43.5 1.1E+02 0.0038 23.6 8.0 29 13-41 172-200 (228)
68 2dfs_A Myosin-5A; myosin-V, in 43.3 1.1E+02 0.0037 28.1 8.7 12 57-68 1032-1043(1080)
69 3he5_A Synzip1; heterodimeric 43.0 19 0.00066 22.3 2.7 20 22-41 6-25 (49)
70 1gd2_E Transcription factor PA 42.5 28 0.00096 22.5 3.5 24 64-87 45-68 (70)
71 3cvf_A Homer-3, homer protein 41.6 39 0.0013 22.5 4.2 25 16-41 4-28 (79)
72 2fxo_A Myosin heavy chain, car 41.4 83 0.0028 21.5 7.0 11 64-74 99-109 (129)
73 2pnv_A Small conductance calci 41.0 42 0.0014 20.1 3.9 26 16-41 13-38 (43)
74 2csf_A DNA-binding protein SAT 40.7 11 0.00039 26.5 1.5 22 82-103 63-84 (101)
75 3c3f_A Alpha/beta peptide with 40.5 35 0.0012 20.0 3.3 22 58-79 4-25 (34)
76 1uo4_A General control protein 40.4 35 0.0012 19.9 3.3 22 58-79 4-25 (34)
77 1r48_A Proline/betaine transpo 39.4 37 0.0013 19.2 3.3 23 55-77 8-30 (33)
78 3efg_A Protein SLYX homolog; x 39.4 77 0.0026 20.5 6.7 17 17-33 12-28 (78)
79 1lwu_C Fibrinogen gamma chain; 39.3 1.1E+02 0.0039 24.6 7.4 49 16-79 9-57 (323)
80 3bas_A Myosin heavy chain, str 38.6 80 0.0027 20.5 8.0 64 9-80 18-81 (89)
81 1go4_E MAD1 (mitotic arrest de 38.5 35 0.0012 23.7 3.7 27 54-80 11-37 (100)
82 3viq_B Mating-type switching p 38.5 29 0.001 23.5 3.3 21 59-79 5-25 (85)
83 3opc_A Uncharacterized protein 37.8 94 0.0032 21.1 7.5 81 15-99 11-104 (154)
84 3brv_B NF-kappa-B essential mo 37.7 27 0.00094 23.2 2.9 19 9-27 23-41 (70)
85 2yy0_A C-MYC-binding protein; 36.6 66 0.0023 19.5 4.4 27 7-33 21-47 (53)
86 1jcd_A Major outer membrane li 36.5 50 0.0017 20.4 3.8 29 55-83 4-32 (52)
87 3u06_A Protein claret segregat 36.4 1.1E+02 0.0038 24.9 7.0 32 8-39 6-37 (412)
88 4afl_A P29ING4, inhibitor of g 35.9 90 0.0031 20.3 6.7 70 10-79 20-89 (104)
89 1gk7_A Vimentin; intermediate 35.4 66 0.0022 18.6 4.4 28 13-40 7-34 (39)
90 2zdi_C Prefoldin subunit alpha 35.4 1.1E+02 0.0037 21.1 5.9 33 9-41 95-127 (151)
91 2k48_A Nucleoprotein; viral pr 35.2 64 0.0022 22.9 4.7 59 17-78 33-102 (107)
92 3a7p_A Autophagy protein 16; c 35.1 1.4E+02 0.0047 22.2 8.3 55 7-76 70-131 (152)
93 4etp_A Kinesin-like protein KA 34.6 48 0.0016 26.9 4.5 38 59-96 21-58 (403)
94 3oja_A Leucine-rich immune mol 34.2 1.1E+02 0.0037 24.1 6.4 61 10-78 422-486 (487)
95 2ke4_A CDC42-interacting prote 33.2 79 0.0027 21.4 4.8 57 19-75 15-75 (98)
96 2r2v_A GCN4 leucine zipper; co 32.6 59 0.002 18.9 3.5 23 58-80 4-26 (34)
97 2v66_B Nuclear distribution pr 32.1 86 0.0029 22.0 4.9 31 8-38 38-68 (111)
98 2d4y_A HAP1, flagellar HOOK-as 32.0 83 0.0028 25.3 5.5 81 14-101 66-153 (463)
99 1p9i_A Cortexillin I/GCN4 hybr 31.6 28 0.00095 19.8 1.9 18 23-40 3-20 (31)
100 2akf_A Coronin-1A; coiled coil 31.2 77 0.0027 18.1 4.1 18 17-34 11-28 (32)
101 2bni_A General control protein 30.1 64 0.0022 18.8 3.3 22 58-79 4-25 (34)
102 3i00_A HIP-I, huntingtin-inter 30.1 1.4E+02 0.0048 20.8 7.5 41 55-95 40-80 (120)
103 3m9b_A Proteasome-associated A 29.8 87 0.003 24.8 5.2 42 56-97 55-96 (251)
104 1am9_A Srebp-1A, protein (ster 29.8 46 0.0016 21.3 3.0 30 9-42 44-73 (82)
105 3u06_A Protein claret segregat 29.4 94 0.0032 25.4 5.5 54 29-97 6-59 (412)
106 2ic6_A Nucleocapsid protein; h 29.3 38 0.0013 22.8 2.6 49 22-70 8-67 (78)
107 2l5g_B Putative uncharacterize 29.1 60 0.002 19.7 3.2 22 55-76 16-37 (42)
108 3l4q_C Phosphatidylinositol 3- 29.0 1E+02 0.0035 23.0 5.1 43 55-97 96-138 (170)
109 3htk_A Structural maintenance 28.6 76 0.0026 18.6 3.7 18 54-71 39-56 (60)
110 1zme_C Proline utilization tra 28.1 57 0.0019 19.1 3.0 19 22-40 47-65 (70)
111 1uii_A Geminin; human, DNA rep 27.9 1.4E+02 0.0049 20.1 6.9 7 9-15 40-46 (83)
112 3m91_A Proteasome-associated A 27.7 1.1E+02 0.0037 18.7 6.4 22 18-39 8-29 (51)
113 1aq5_A Matrilin-1, CMP, cartil 26.8 86 0.0029 19.2 3.7 25 54-78 22-46 (47)
114 2v71_A Nuclear distribution pr 26.5 2.1E+02 0.0071 21.6 7.8 29 13-41 11-39 (189)
115 3qne_A Seryl-tRNA synthetase, 25.3 3.1E+02 0.011 23.2 8.1 47 57-104 73-119 (485)
116 3swk_A Vimentin; cytoskeleton, 24.7 55 0.0019 21.4 2.7 22 57-78 2-23 (86)
117 4dyl_A Tyrosine-protein kinase 24.3 2.3E+02 0.008 22.3 6.8 74 9-82 306-386 (406)
118 1i84_S Smooth muscle myosin he 23.4 2.5E+02 0.0087 25.5 7.5 27 13-39 872-898 (1184)
119 3azd_A Short alpha-tropomyosin 23.0 47 0.0016 18.9 1.9 25 55-79 4-28 (37)
120 3t98_B Nucleoporin NUP58/NUP45 23.0 1.1E+02 0.0038 20.5 4.0 20 8-27 68-87 (93)
121 1deb_A APC protein, adenomatou 22.5 59 0.002 20.6 2.4 23 20-42 4-26 (54)
122 2ic9_A Nucleocapsid protein; h 22.0 60 0.0021 22.6 2.6 55 22-79 8-73 (96)
123 2ocy_A RAB guanine nucleotide 21.7 2E+02 0.0067 21.1 5.5 69 16-87 41-109 (154)
124 3o3m_B Beta subunit 2-hydroxya 21.4 2.2E+02 0.0075 22.3 6.1 42 56-97 132-182 (385)
125 4a04_A T-box transcription fac 21.3 25 0.00087 26.4 0.6 18 81-98 18-35 (203)
126 3osx_A 60 kDa chaperonin; alph 21.1 1.6E+02 0.0054 22.7 5.0 33 16-68 163-195 (201)
127 3kin_B Kinesin heavy chain; mo 21.0 1.8E+02 0.0062 19.7 4.9 30 10-39 87-116 (117)
128 2j5u_A MREC protein; bacterial 20.4 87 0.003 23.7 3.4 33 56-92 27-59 (255)
129 2dq0_A Seryl-tRNA synthetase; 20.3 3.6E+02 0.012 22.1 8.2 48 56-104 70-117 (455)
No 1
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=94.15 E-value=0.067 Score=33.46 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhh
Q psy524 17 MKDRCQLLQLRLSNLEEENLKLR 39 (111)
Q Consensus 17 mkeRC~~LQ~Rl~~lEEEN~~LR 39 (111)
=|++...|+.++..|+.+|..|+
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L~ 42 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELA 42 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888887774
No 2
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=93.98 E-value=0.22 Score=35.58 Aligned_cols=54 Identities=28% Similarity=0.354 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHh
Q psy524 18 KDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIF 79 (111)
Q Consensus 18 keRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~ 79 (111)
=.=|..|.+|++.+|+||-+||...... ..-+..|..+|..|..++..|...-.
T Consensus 36 IqEYl~LE~~~s~le~e~~rlr~~~~~~--------~~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 36 IKEYLELEKSLSRMEDENNRLRLESKRL--------DARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc--------hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3569999999999999999999873222 34566778888888887777765543
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=93.72 E-value=0.22 Score=30.84 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhh
Q psy524 17 MKDRCQLLQLRLSNLEEENLKLR 39 (111)
Q Consensus 17 mkeRC~~LQ~Rl~~lEEEN~~LR 39 (111)
=|++...|+.++..|+.+|..|+
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~~L~ 42 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNGQLQ 42 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888887774
No 4
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=93.66 E-value=0.32 Score=32.88 Aligned_cols=78 Identities=21% Similarity=0.239 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhh----cccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHH
Q psy524 14 LQTMKDRCQLLQLRLSNLEEENLKLRIDKK----KSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIFMVATENKQLW 89 (111)
Q Consensus 14 LqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~----~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLW 89 (111)
+|.|.+|--..=.+|-.||.+|-.|-..-. +..+...+.-.+.+..||.+|+.++..|.+|.-.|.=...+-..+-
T Consensus 11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888887777888899999988843221 1111111123567889999999999999999887765555544444
Q ss_pred HH
Q psy524 90 TK 91 (111)
Q Consensus 90 sr 91 (111)
.+
T Consensus 91 ~K 92 (93)
T 3s4r_A 91 EK 92 (93)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 5
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=93.51 E-value=0.54 Score=35.62 Aligned_cols=91 Identities=16% Similarity=0.250 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHhHhhhchHH
Q psy524 8 CALQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIFMVATENKQ 87 (111)
Q Consensus 8 yAL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRq 87 (111)
-++-.++.=|.+||..|+.--..||.|...|...-...-.+.. --+-.+..|+.+|..|.-.-..+..-..-|.+|||+
T Consensus 44 ~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~-q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~ 122 (168)
T 3o0z_A 44 SQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRG-HDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKE 122 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677778899999999999999999998665432110000 001234568888888888888888899999999999
Q ss_pred HHHHHhhhhhhc
Q psy524 88 LWTKLSMLTEET 99 (111)
Q Consensus 88 LWsrLS~L~k~~ 99 (111)
|=-++|.|-|+.
T Consensus 123 L~Ekl~~lEKe~ 134 (168)
T 3o0z_A 123 AQDMLNHSEKEK 134 (168)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998843
No 6
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=92.13 E-value=0.44 Score=29.84 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhh
Q psy524 17 MKDRCQLLQLRLSNLEEENLKLRI 40 (111)
Q Consensus 17 mkeRC~~LQ~Rl~~lEEEN~~LR~ 40 (111)
=+++...|+.++..|+.+|..|+.
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~~ 44 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQT 44 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888888887743
No 7
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=91.93 E-value=0.08 Score=36.22 Aligned_cols=46 Identities=24% Similarity=0.265 Sum_probs=39.2
Q ss_pred CCchhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccc
Q psy524 1 MDSTTS--NCALQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSE 46 (111)
Q Consensus 1 ~~~~~s--~yAL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~ 46 (111)
||-.-+ .||..-....+|+|-..|..|++.||-||-.||...+...
T Consensus 2 MDLVKtHLm~AVREEVevLKe~I~EL~e~~~qLE~EN~~Lk~~aspEq 49 (78)
T 1dip_A 2 MDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQ 49 (78)
T ss_dssp CCSTTTGGGGTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 454433 6888888999999999999999999999999999987644
No 8
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=90.93 E-value=1.3 Score=31.88 Aligned_cols=69 Identities=17% Similarity=0.187 Sum_probs=46.1
Q ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhHhhhhhhcc-cccccCCchhhHHHHHHHHHHHHHhHHHHhhh
Q psy524 7 NCALQIALQ------TMKDRCQLLQLRLSNLEEENLKLRIDKKKS-ETNEKEPKESLVSKLNEEIEMLSQQKTQLTHH 77 (111)
Q Consensus 7 ~yAL~vALq------tmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~-~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~h 77 (111)
..|+.+||- -+++.+..|...+..+++|.-.|+..-... .... .-..++..|++++.+|+++...|.-+
T Consensus 57 r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e--~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 57 LRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAE--SSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555554 356788899999999999999998775541 1111 22446667777777777777777543
No 9
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=90.34 E-value=0.82 Score=31.03 Aligned_cols=32 Identities=25% Similarity=0.199 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy524 9 ALQIALQTMKDRCQLLQLRLSNLEEENLKLRI 40 (111)
Q Consensus 9 AL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~ 40 (111)
|..--=.-=|.|=..++.|+..||.||..||.
T Consensus 26 AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~ 57 (87)
T 1hjb_A 26 AVRKSRDKAKMRNLETQHKVLELTAENERLQK 57 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444566777788888888888887754
No 10
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=89.68 E-value=1.2 Score=27.98 Aligned_cols=26 Identities=23% Similarity=0.212 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy524 15 QTMKDRCQLLQLRLSNLEEENLKLRI 40 (111)
Q Consensus 15 qtmkeRC~~LQ~Rl~~lEEEN~~LR~ 40 (111)
+--|+|+..|+.++..|+.+|..|+.
T Consensus 19 ~KKk~~~~~le~~~~~L~~~N~~L~~ 44 (63)
T 1ci6_A 19 QKKRAEQEALTGECKELEKKNEALKE 44 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678888888888888888887743
No 11
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=85.88 E-value=1.3 Score=27.10 Aligned_cols=33 Identities=21% Similarity=0.403 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHH
Q psy524 57 VSKLNEEIEMLSQQKTQLTHHIFMVATENKQLW 89 (111)
Q Consensus 57 ~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLW 89 (111)
+..|.+++.+|......|++-|+-..+||.-|-
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mLR 37 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQMLR 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 567999999999999999999999999998764
No 12
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=85.17 E-value=1.1 Score=26.39 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhHHHHhhhHh
Q psy524 57 VSKLNEEIEMLSQQKTQLTHHIF 79 (111)
Q Consensus 57 ~~~L~ekV~EL~rQK~QL~~hI~ 79 (111)
....++.|++|.+|...|..+|+
T Consensus 9 n~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHhhHHHHHHHHHHHHHHHH
Confidence 45678899999999999999996
No 13
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=84.31 E-value=6.3 Score=26.08 Aligned_cols=34 Identities=26% Similarity=0.214 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy524 7 NCALQIALQTMKDRCQLLQLRLSNLEEENLKLRI 40 (111)
Q Consensus 7 ~yAL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~ 40 (111)
|-|..--=+-=|.|-..++.|+..||.||..||.
T Consensus 24 N~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~ 57 (78)
T 1gu4_A 24 NIAVRKSRDKAKMRNLETQHKVLELTAENERLQK 57 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444545555577778888888888888888854
No 14
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=83.17 E-value=2.7 Score=27.45 Aligned_cols=51 Identities=20% Similarity=0.221 Sum_probs=30.5
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHH
Q psy524 7 NCALQIALQTM-KDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKT 72 (111)
Q Consensus 7 ~yAL~vALqtm-keRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~ 72 (111)
|-|-|-||--= ++++..|+.+|..+|.+|..| ..++..|+++|..|+.+-.
T Consensus 16 NR~AQRafReRK~~~i~~LE~~v~~le~~~~~l---------------~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 16 NRAAQRAFRKRKEDHLKALETQVVTLKELHSST---------------TLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHH
Confidence 44444444322 235677888888888877765 2355566666666665443
No 15
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=82.89 E-value=1.8 Score=27.40 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhh
Q psy524 18 KDRCQLLQLRLSNLEEENLKLRI 40 (111)
Q Consensus 18 keRC~~LQ~Rl~~lEEEN~~LR~ 40 (111)
+++...|+.++..|+.||..|+.
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ 51 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLEN 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777776643
No 16
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=82.72 E-value=2.5 Score=29.00 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=15.2
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHhHhhh
Q psy524 9 ALQIALQ---TMKDRCQLLQLRLSNLEEENLKLRI 40 (111)
Q Consensus 9 AL~vALq---tmkeRC~~LQ~Rl~~lEEEN~~LR~ 40 (111)
||.-||+ .|.++-.+++.-++.|.+||..||.
T Consensus 32 AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 32 ALYEALKENEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555553 3344444444455555555555543
No 17
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=81.48 E-value=3.6 Score=25.17 Aligned_cols=28 Identities=32% Similarity=0.465 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy524 13 ALQTMKDRCQLLQLRLSNLEEENLKLRI 40 (111)
Q Consensus 13 ALqtmkeRC~~LQ~Rl~~lEEEN~~LR~ 40 (111)
--+.|-.|--.|..|+++++.||.-||-
T Consensus 11 r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 11 RVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3456667777888888888899988874
No 18
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=81.15 E-value=4.5 Score=30.83 Aligned_cols=43 Identities=19% Similarity=0.192 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHh
Q psy524 22 QLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIF 79 (111)
Q Consensus 22 ~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~ 79 (111)
..+|.+++.+.+||.+| ..++..|.++++++.+.|.+++.+++
T Consensus 135 ~~~~~~~~~L~~e~~~l---------------~~~~~~l~~qlE~~v~~K~~~E~~L~ 177 (213)
T 1ik9_A 135 AENQAKNEHLQKENERL---------------LRDWNDVQGRFEKAVSAKEALETDLY 177 (213)
T ss_dssp HHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888888888877 34677888999999999998887664
No 19
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=80.92 E-value=1.9 Score=26.65 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHH
Q psy524 56 LVSKLNEEIEMLSQQKTQLTHHIFMVATENKQL 88 (111)
Q Consensus 56 d~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqL 88 (111)
-+..|..+|.+|+.++..|...|.+...|+.+|
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677777777777776666666666554
No 20
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=79.65 E-value=5.7 Score=27.14 Aligned_cols=7 Identities=14% Similarity=0.363 Sum_probs=4.0
Q ss_pred CchhHHH
Q psy524 2 DSTTSNC 8 (111)
Q Consensus 2 ~~~~s~y 8 (111)
+.|+.+|
T Consensus 23 e~Pse~Y 29 (83)
T 1uii_A 23 ENPSSQY 29 (83)
T ss_dssp CCHHHHH
T ss_pred CCChHHH
Confidence 3566666
No 21
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=79.33 E-value=17 Score=27.06 Aligned_cols=71 Identities=17% Similarity=0.157 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHhHhhhchH
Q psy524 7 NCALQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIFMVATENK 86 (111)
Q Consensus 7 ~yAL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENR 86 (111)
.-++.-++..++..|..|+.++..+++|-. .+...++.|+..+..|+=|-..+.....-+-.||.
T Consensus 63 ~~~~~~~I~~L~~El~~l~~ki~dLeeel~---------------eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~ 127 (152)
T 3a7p_A 63 DDALLNTLAILQKELKSKEQEIRRLKEVIA---------------LKNKNTERLNAALISGTIENNVLQQKLSDLKKEHS 127 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556777777777777777777776632 12446677888888888888888888888899998
Q ss_pred HHHHHH
Q psy524 87 QLWTKL 92 (111)
Q Consensus 87 qLWsrL 92 (111)
.|=.|+
T Consensus 128 ~LV~RW 133 (152)
T 3a7p_A 128 QLVARW 133 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 886665
No 22
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=79.30 E-value=2.4 Score=26.10 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhh
Q psy524 16 TMKDRCQLLQLRLSNLEEENLKLRIDK 42 (111)
Q Consensus 16 tmkeRC~~LQ~Rl~~lEEEN~~LR~~~ 42 (111)
--++....|+.++..||.||..|+...
T Consensus 19 RKk~~~~~LE~~v~~L~~eN~~L~~~~ 45 (55)
T 1dh3_A 19 KKKEYVKSLENRVAVLENQNKTLIEEL 45 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345668889999999999999887653
No 23
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=78.79 E-value=16 Score=27.52 Aligned_cols=61 Identities=23% Similarity=0.276 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHh
Q psy524 7 NCALQIALQTMK-------DRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLT 75 (111)
Q Consensus 7 ~yAL~vALqtmk-------eRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~ 75 (111)
++.||.+|..=| ++-.-||.|+..|++|.-++|..-.+. ..|...|.++|..|-|.|.-+.
T Consensus 71 ~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~--------~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 71 YYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKV--------EGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhhh
Confidence 566777776544 455567778899999888887765442 4577899999999999998776
No 24
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Probab=78.69 E-value=11 Score=25.39 Aligned_cols=81 Identities=11% Similarity=0.022 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHhHhhhc--------h-
Q psy524 15 QTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIFMVATE--------N- 85 (111)
Q Consensus 15 qtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~E--------N- 85 (111)
.+|.+=+..++.=+..+++|-..|...... ....-..+...|-.++..+..+..++...++.-+.+ -
T Consensus 10 ~~L~~~~~~l~~L~~lL~~E~~~L~~~d~~----~L~~i~~~k~~ll~~L~~~~~~R~~~l~~lg~~~~~~~~~~l~~~~ 85 (157)
T 2fup_A 10 DLFAEDIGHANQLLQLVDEEFQALERRELP----VLQQLLGAKQPLMQQLERNGRARAEILREAGVSLDREGLARYARER 85 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHhcc
Confidence 456777778888899999999998655322 111223445556666777777777766555432111 1
Q ss_pred ------HHHHHHHhhhhhhc
Q psy524 86 ------KQLWTKLSMLTEET 99 (111)
Q Consensus 86 ------RqLWsrLS~L~k~~ 99 (111)
+.+|..|..+.++|
T Consensus 86 ~~~~~l~~~~~~l~~l~~~~ 105 (157)
T 2fup_A 86 ADGAELLARGDELGELLERC 105 (157)
T ss_dssp TTHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHH
Confidence 56899888887644
No 25
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=78.19 E-value=5.5 Score=24.38 Aligned_cols=33 Identities=30% Similarity=0.351 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHH
Q psy524 56 LVSKLNEEIEMLSQQKTQLTHHIFMVATENKQL 88 (111)
Q Consensus 56 d~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqL 88 (111)
-+..|+.+|.+|..++..|...|.+...|+.+|
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666665554
No 26
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=77.18 E-value=13 Score=24.46 Aligned_cols=72 Identities=25% Similarity=0.261 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHHHHHhhhhh
Q psy524 26 LRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIFMVATENKQLWTKLSMLTE 97 (111)
Q Consensus 26 ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWsrLS~L~k 97 (111)
+|-..|=+-=..||..-+....+...++.+-+..--+=|..|+.+...|...+...-.+|.+|-.+|..|..
T Consensus 16 ~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~~ 87 (88)
T 1nkp_A 16 QRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445555555555665554433333334555555555667888888888888888889999999999998853
No 27
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=75.37 E-value=5.3 Score=26.97 Aligned_cols=32 Identities=25% Similarity=0.278 Sum_probs=15.6
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHhHhhh
Q psy524 9 ALQIALQT---MKDRCQLLQLRLSNLEEENLKLRI 40 (111)
Q Consensus 9 AL~vALqt---mkeRC~~LQ~Rl~~lEEEN~~LR~ 40 (111)
||.-||+- +..+-.+++.-++.|.+||..|+.
T Consensus 28 AL~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~e 62 (79)
T 2zxx_A 28 ALYEALKENEKLHKEIEQKDSEIARLRKENKDLAE 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555542 333333444555555555555543
No 28
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=75.02 E-value=5.4 Score=24.94 Aligned_cols=33 Identities=21% Similarity=0.163 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHH
Q psy524 56 LVSKLNEEIEMLSQQKTQLTHHIFMVATENKQL 88 (111)
Q Consensus 56 d~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqL 88 (111)
....|..++.+|..+...|...|.-...|+..|
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666665554
No 29
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=74.74 E-value=16 Score=25.42 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhHHHHhhhHh
Q psy524 58 SKLNEEIEMLSQQKTQLTHHIF 79 (111)
Q Consensus 58 ~~L~ekV~EL~rQK~QL~~hI~ 79 (111)
...++.|+.|+.+-+.|-.+|.
T Consensus 71 ~~~~~~~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 71 QRLREDHSQLQAECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777766664
No 30
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=71.98 E-value=23 Score=26.88 Aligned_cols=66 Identities=21% Similarity=0.162 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHh
Q psy524 10 LQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIF 79 (111)
Q Consensus 10 L~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~ 79 (111)
|..=|...--|+..|+.++..+..|...+|..-....+. ..+.+..|+..|..|...+.+|..+|.
T Consensus 47 LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e----~~~~~~~Lq~el~~l~~~~~~l~~~ir 112 (189)
T 2v71_A 47 LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ----SYKQVSVLEDDLSQTRAIKEQLHKYVR 112 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666677777777777777777776543221111 123466777777777777777766663
No 31
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=70.18 E-value=7.9 Score=27.02 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHH
Q psy524 15 QTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEML 67 (111)
Q Consensus 15 qtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL 67 (111)
..|++.|..|-.||..||+|---|=..-.+ ..-|+..|+.+|.+|
T Consensus 45 ~~L~e~~keLh~~I~~lEeEKYDlE~kv~k--------q~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 45 DKLRDKAKELWDWLYQLQTEKYDFAEQIKR--------KKYEIVTLRNRIDQA 89 (107)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHh--------hhhHHHHHHHHHHHh
Confidence 357888999999999999986655222111 134666777777766
No 32
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=67.51 E-value=10 Score=25.61 Aligned_cols=41 Identities=15% Similarity=0.179 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHHHHHhhhhh
Q psy524 57 VSKLNEEIEMLSQQKTQLTHHIFMVATENKQLWTKLSMLTE 97 (111)
Q Consensus 57 ~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWsrLS~L~k 97 (111)
...+..++.+|.++..+|...|.+...|...|=.-|+++-.
T Consensus 38 ~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 34678899999999999999999999999988888776544
No 33
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=67.47 E-value=15 Score=33.63 Aligned_cols=11 Identities=27% Similarity=0.365 Sum_probs=4.1
Q ss_pred HHHHHHHHhHH
Q psy524 62 EEIEMLSQQKT 72 (111)
Q Consensus 62 ekV~EL~rQK~ 72 (111)
++|..|++++.
T Consensus 1023 ~kv~~L~~e~~ 1033 (1080)
T 2dfs_A 1023 QLVSELKEQNT 1033 (1080)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 34
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=66.99 E-value=11 Score=26.33 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHH
Q psy524 14 LQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEML 67 (111)
Q Consensus 14 LqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL 67 (111)
...|++.|..|-.||..||+|---|=..-.+ ..-|+..|+.+|.+|
T Consensus 44 ~~~L~e~~keLh~~I~~LEeEKYDlE~kv~k--------q~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 44 EDQLREKAKELWQTIYNLEAEKFDLQEKFKQ--------QKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHh--------hhHHHHHHHHHHHHh
Confidence 3568999999999999999997666222111 134667777777776
No 35
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=66.98 E-value=20 Score=22.14 Aligned_cols=21 Identities=33% Similarity=0.332 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHhHHHHhh
Q psy524 56 LVSKLNEEIEMLSQQKTQLTH 76 (111)
Q Consensus 56 d~~~L~ekV~EL~rQK~QL~~ 76 (111)
+...|+++|..|..++.+|..
T Consensus 38 ~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 38 EKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666665543
No 36
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=66.71 E-value=3.6 Score=28.05 Aligned_cols=31 Identities=35% Similarity=0.375 Sum_probs=24.3
Q ss_pred chhhHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHHH
Q psy524 53 KESLVSKLNEEIEMLSQQKTQLTHHIFMVATENKQLWT 90 (111)
Q Consensus 53 ~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWs 90 (111)
..-+|+.|+++|.||-.+..||+. ||.-|=+
T Consensus 13 VREEVevLKe~I~EL~e~~~qLE~-------EN~~Lk~ 43 (78)
T 1dip_A 13 VREEVEILKEQIRELVEKNSQLER-------ENTLLKT 43 (78)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHH-------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 455788999999999999999874 6655543
No 37
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=66.70 E-value=7 Score=22.82 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhHHHHhhhHh
Q psy524 58 SKLNEEIEMLSQQKTQLTHHIF 79 (111)
Q Consensus 58 ~~L~ekV~EL~rQK~QL~~hI~ 79 (111)
.+|..+|+||-..|.-|+..|.
T Consensus 3 nQLEdKVEell~~~~~le~EV~ 24 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIA 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHH
Confidence 5799999999999999998874
No 38
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=66.10 E-value=6.4 Score=26.05 Aligned_cols=38 Identities=11% Similarity=0.126 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHHHHHhh
Q psy524 57 VSKLNEEIEMLSQQKTQLTHHIFMVATENKQLWTKLSM 94 (111)
Q Consensus 57 ~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWsrLS~ 94 (111)
...+..++.+|.++..+|...|.+...|...|=.-|++
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q 75 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999999999999998877655543
No 39
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=65.74 E-value=20 Score=21.84 Aligned_cols=59 Identities=22% Similarity=0.259 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHH--HHh--HhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHhH
Q psy524 17 MKDRCQLLQLRLSNLEE--ENL--KLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIFM 80 (111)
Q Consensus 17 mkeRC~~LQ~Rl~~lEE--EN~--~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~M 80 (111)
+..+|..|+.++..+|. .++ .+..-....... .......+..|.-|..+..||.++|+|
T Consensus 3 ~~~~~~~le~k~~~~e~iv~~l~~~v~~~~~~le~~-----~~q~~~~~~~i~~Le~k~~~l~~~l~~ 65 (66)
T 3m0a_A 3 LLQRCESLEKKTATFENIVCVLNREVERVAMTAEAC-----SRQHRLDQDKIEALSSKVQQLERSIGL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-----HhhhhHHHhHHHHHHHHHHHHHHHHcc
Confidence 56789999999999887 221 111111111100 011111255666677767777777654
No 40
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=65.56 E-value=12 Score=22.37 Aligned_cols=21 Identities=33% Similarity=0.426 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHhHHHHh
Q psy524 55 SLVSKLNEEIEMLSQQKTQLT 75 (111)
Q Consensus 55 sd~~~L~ekV~EL~rQK~QL~ 75 (111)
-.+..|+.+++.|+..|-||-
T Consensus 15 eQi~~l~~kl~~LkeEKHQLF 35 (38)
T 2l5g_A 15 EQILKLEEKLLALQEEKHQLF 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888887763
No 41
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=65.46 E-value=20 Score=25.27 Aligned_cols=62 Identities=21% Similarity=0.146 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHhHhhhch
Q psy524 20 RCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIFMVATEN 85 (111)
Q Consensus 20 RC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~EN 85 (111)
|+..|+.+++.|+-|...+|..-..+... ..+....|+..|..|...+..|..+|.=.=-.|
T Consensus 4 ~~rdL~~~~~~L~~E~e~~k~K~~~~~~e----~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~N 65 (111)
T 2v66_B 4 RNRDLQADNQRLKYEVEALKEKLEHQYAQ----SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQAN 65 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56677777777777777776544332221 134667788888888888888887775443333
No 42
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=65.21 E-value=20 Score=25.95 Aligned_cols=47 Identities=19% Similarity=0.338 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHH
Q psy524 14 LQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLS 68 (111)
Q Consensus 14 LqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~ 68 (111)
...+++.|..|-.||..+|+|---|=....+ ..-|+..|+.+|.+|.
T Consensus 60 ~~~L~e~~keLh~~I~~LEeEKYDlE~kvkk--------q~yEI~dL~~rV~Dl~ 106 (133)
T 1j1d_C 60 FAELQDLARQLHARVDKVDEERYDIEAKVTK--------NITEIADLTQKIFDLR 106 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH--------cchHHHHHHHHHHHHH
Confidence 3568999999999999999997666322221 2357888999999885
No 43
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=65.06 E-value=26 Score=24.33 Aligned_cols=72 Identities=28% Similarity=0.333 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHhHhhhchHH
Q psy524 13 ALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIFMVATENKQ 87 (111)
Q Consensus 13 ALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRq 87 (111)
.|..+|++-.+|+.+++.++.|-.+|+..-......... -.+....+...|++|+-. =..+=--||+.+++.
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~-aE~~~~~ie~ElEeLTas--LFeEAN~MVa~ar~e 77 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTK-AEEEADKLNKEVEDLTAS--LFDEANNMVADARKE 77 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 467889999999999999999999997655432222111 134556677777777753 234455689888654
No 44
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=62.73 E-value=9.2 Score=23.52 Aligned_cols=28 Identities=11% Similarity=0.188 Sum_probs=20.8
Q ss_pred CchhhHHHHHHHHHHHHHhHHHHhhhHh
Q psy524 52 PKESLVSKLNEEIEMLSQQKTQLTHHIF 79 (111)
Q Consensus 52 ~~~sd~~~L~ekV~EL~rQK~QL~~hI~ 79 (111)
+..+|++.|+..++||..+-..|...+.
T Consensus 16 p~~~d~eaLk~E~~eLk~k~~~L~~~~~ 43 (53)
T 2yy0_A 16 PENPEIELLRLELAEMKEKYEAIVEENK 43 (53)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888888888887777766554
No 45
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=60.69 E-value=9.5 Score=25.82 Aligned_cols=46 Identities=22% Similarity=0.190 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHh
Q psy524 26 LRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIF 79 (111)
Q Consensus 26 ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~ 79 (111)
+-+..+-.||..|...+-...... ..|=.+|+||+.+++.|.+-+-
T Consensus 9 kevEnLi~EN~eLl~TKNaLnvvk--------~DLI~rvdELt~E~e~l~~El~ 54 (77)
T 2w83_C 9 REVENLILENTQLLETKNALNIVK--------NDLIAKVDELTCEKDVLQGELE 54 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhHHHHHHHHHH
Confidence 457888999999976654433222 2477899999999998876543
No 46
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=59.34 E-value=14 Score=24.93 Aligned_cols=55 Identities=25% Similarity=0.339 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHh
Q psy524 10 LQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIF 79 (111)
Q Consensus 10 L~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~ 79 (111)
|..=.|.+=+.-..||..+..|.++|..| ..+++.+++..+.|.++..||.+...
T Consensus 11 LE~KIq~avdtI~lLqmEieELKekN~~L---------------~~e~~e~~~~~~~L~~en~qLk~E~~ 65 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQMEIEELKEKNNSL---------------SQEVQNAQHQREELERENNHLKEQQN 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 33334444455567888888888888887 34566677777778888888876543
No 47
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=58.53 E-value=12 Score=22.21 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHhHHHHhhhHh
Q psy524 57 VSKLNEEIEMLSQQKTQLTHHIF 79 (111)
Q Consensus 57 ~~~L~ekV~EL~rQK~QL~~hI~ 79 (111)
..+|..+|+||-..|.-|...|.
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~ 25 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVA 25 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHH
Confidence 45788999999999998888774
No 48
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=56.87 E-value=74 Score=25.42 Aligned_cols=33 Identities=15% Similarity=0.013 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q psy524 10 LQIALQTMKDRCQLLQLRLSNLEEENLKLRIDK 42 (111)
Q Consensus 10 L~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~ 42 (111)
+.-.++.++++=...++-+..++++-...|..-
T Consensus 461 ~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~ 493 (597)
T 3oja_B 461 LRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRY 493 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 455667777777777777776666666555543
No 49
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=56.72 E-value=42 Score=22.51 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy524 9 ALQIALQTMKDRCQLLQLRLSNLEEENLKLRID 41 (111)
Q Consensus 9 AL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~ 41 (111)
-+.-|...++.|...|..++..+++.-..+|..
T Consensus 85 ~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~ 117 (133)
T 1fxk_C 85 NFEDAMESIKSQKNELESTLQKMGENLRAITDI 117 (133)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355688999999999999999999887777544
No 50
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=55.24 E-value=37 Score=25.79 Aligned_cols=47 Identities=19% Similarity=0.338 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHH
Q psy524 14 LQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLS 68 (111)
Q Consensus 14 LqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~ 68 (111)
...|++.|..|-.||..||+|---|=....+ ..-|+..|+.+|.+|.
T Consensus 60 e~~L~e~ckELh~~I~~LEeEKYDlE~kvkk--------qdyEI~dL~~rV~DLr 106 (180)
T 1j1e_C 60 FAELQDLARQLHARVDKVDEERYDIEAKVTK--------NITEIADLTQKIFDLR 106 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh--------cchhHHHHHHHHHHHH
Confidence 4568999999999999999997666332222 2357888999999995
No 51
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=54.41 E-value=18 Score=22.03 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHhHHHHhhhHhH
Q psy524 56 LVSKLNEEIEMLSQQKTQLTHHIFM 80 (111)
Q Consensus 56 d~~~L~ekV~EL~rQK~QL~~hI~M 80 (111)
-+..|..+|..|..+...|..+|..
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~ 47 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKA 47 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666555555554443
No 52
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=53.35 E-value=23 Score=27.75 Aligned_cols=33 Identities=24% Similarity=0.248 Sum_probs=19.4
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy524 9 ALQIALQ---TMKDRCQLLQLRLSNLEEENLKLRID 41 (111)
Q Consensus 9 AL~vALq---tmkeRC~~LQ~Rl~~lEEEN~~LR~~ 41 (111)
||.-||+ .|.++-..|+..++.|.+||..||.-
T Consensus 109 AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeL 144 (209)
T 2wvr_A 109 ALYEALKENEKLHKEIEQKDNEIARLKKENKELAEV 144 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666664 34455555566666666666666543
No 53
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=52.29 E-value=51 Score=22.16 Aligned_cols=31 Identities=29% Similarity=0.383 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhHHHHhhhHhH-------hhhchHHHH
Q psy524 59 KLNEEIEMLSQQKTQLTHHIFM-------VATENKQLW 89 (111)
Q Consensus 59 ~L~ekV~EL~rQK~QL~~hI~M-------Va~ENRqLW 89 (111)
.|+-.|+||..++..|...+.= ...||.+|=
T Consensus 24 lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk 61 (81)
T 2jee_A 24 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLK 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3444555555555555544444 555777764
No 54
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=51.06 E-value=21 Score=23.75 Aligned_cols=35 Identities=17% Similarity=0.213 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhHHHHhhhHhHhhhchHHHHHHHh
Q psy524 59 KLNEEIEMLSQQKTQLTHHIFMVATENKQLWTKLS 93 (111)
Q Consensus 59 ~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWsrLS 93 (111)
.|+..|++|.=+-+++.+.|.=+--..+.+..-|.
T Consensus 31 ~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 31 DNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444455554443
No 55
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=49.94 E-value=33 Score=23.58 Aligned_cols=77 Identities=23% Similarity=0.138 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccC---CchhhHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHHH
Q psy524 14 LQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKE---PKESLVSKLNEEIEMLSQQKTQLTHHIFMVATENKQLWT 90 (111)
Q Consensus 14 LqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~---~~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWs 90 (111)
++..|+-...|.+.|..|+-|...+|......+....+ .-..++..++..|..|..+-.++-..+.=...|-+.|-+
T Consensus 33 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~ 112 (131)
T 3tnu_A 33 VQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLD 112 (131)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445545555666666666666665554442222111 112355666777777666666665555555555555544
No 56
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=48.74 E-value=53 Score=22.42 Aligned_cols=77 Identities=10% Similarity=0.119 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccC---CchhhHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHHH
Q psy524 14 LQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKE---PKESLVSKLNEEIEMLSQQKTQLTHHIFMVATENKQLWT 90 (111)
Q Consensus 14 LqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~---~~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWs 90 (111)
++.-|+-...+.+.|..|+-|-..+|......+....+ .-..++..++.+|..|..+-.++-..+.=...|-+.|-+
T Consensus 31 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Lln 110 (129)
T 3tnu_B 31 LRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMN 110 (129)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44445555556666666666666666555443222111 112355566667766666655555554444455555544
No 57
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=48.30 E-value=17 Score=21.17 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhHHHHhhhHh
Q psy524 58 SKLNEEIEMLSQQKTQLTHHIF 79 (111)
Q Consensus 58 ~~L~ekV~EL~rQK~QL~~hI~ 79 (111)
++|..+|+||-..|+.|...|.
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~ 24 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVA 24 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHH
Confidence 3688888888888888887763
No 58
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=47.89 E-value=89 Score=25.33 Aligned_cols=41 Identities=15% Similarity=0.244 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHHHHHhhhh
Q psy524 56 LVSKLNEEIEMLSQQKTQLTHHIFMVATENKQLWTKLSMLT 96 (111)
Q Consensus 56 d~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWsrLS~L~ 96 (111)
-.+.|++.|.++...|.+|.+.+..=+.+||+|=+++..|.
T Consensus 206 n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lk 246 (373)
T 3hhm_B 206 NYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIK 246 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 34579999999999999999999999999999988887663
No 59
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=47.80 E-value=21 Score=25.62 Aligned_cols=56 Identities=23% Similarity=0.319 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHhHhh----hhhhc-----cccccc--CCchhhHHHHHHHHHHHHHhHHHHhhhHh
Q psy524 21 CQLLQLRLSNLEEENLKLR----IDKKK-----SETNEK--EPKESLVSKLNEEIEMLSQQKTQLTHHIF 79 (111)
Q Consensus 21 C~~LQ~Rl~~lEEEN~~LR----~~~~~-----~~~~~~--~~~~sd~~~L~ekV~EL~rQK~QL~~hI~ 79 (111)
++.||.-+...|-....-| -.... |+.|.. ..-++.|+.|+.||+||.+ ||.+.|.
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKr---qLAd~va 90 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKR---QLADRIA 90 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 4567888887777655433 32222 222221 1456789999999999976 4666654
No 60
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=46.59 E-value=23 Score=20.74 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHhHHHHhhhHh
Q psy524 57 VSKLNEEIEMLSQQKTQLTHHIF 79 (111)
Q Consensus 57 ~~~L~ekV~EL~rQK~QL~~hI~ 79 (111)
.++|..+|+||-..|+-|...|.
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~ 25 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVA 25 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHH
Confidence 35788999999999999988774
No 61
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=46.15 E-value=30 Score=26.37 Aligned_cols=37 Identities=32% Similarity=0.334 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHHHHHhhhhh
Q psy524 57 VSKLNEEIEMLSQQKTQLTHHIFMVATENKQLWTKLSMLTE 97 (111)
Q Consensus 57 ~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWsrLS~L~k 97 (111)
++.||+++.+|..+-.+|.+ +|.+|-+++.++.++.-
T Consensus 74 ~~~LR~r~~~Le~~L~~Li~----~A~~Ne~l~~~~~~l~l 110 (252)
T 3e98_A 74 VRLLRERNIEMRHRLSQLMD----VARENDRLFDKTRRLVL 110 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 34466666666665555554 57899999999988764
No 62
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=45.90 E-value=29 Score=23.72 Aligned_cols=34 Identities=21% Similarity=0.365 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHH
Q psy524 55 SLVSKLNEEIEMLSQQKTQLTHHIFMVATENKQL 88 (111)
Q Consensus 55 sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqL 88 (111)
..+..|++.|+.|..+-..|-+||..+.-.-|+|
T Consensus 6 ~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~l 39 (106)
T 2aze_B 6 GRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLL 39 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888999999999999999998776554444
No 63
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=45.59 E-value=24 Score=20.89 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhHHHHhhhHh
Q psy524 57 VSKLNEEIEMLSQQKTQLTHHIF 79 (111)
Q Consensus 57 ~~~L~ekV~EL~rQK~QL~~hI~ 79 (111)
..+|..+|+||-..|.-|...|.
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~ 25 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVA 25 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHH
Confidence 35788888888888888887764
No 64
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=44.93 E-value=33 Score=21.37 Aligned_cols=26 Identities=15% Similarity=0.296 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHHhHHHHhhhHhH
Q psy524 55 SLVSKLNEEIEMLSQQKTQLTHHIFM 80 (111)
Q Consensus 55 sd~~~L~ekV~EL~rQK~QL~~hI~M 80 (111)
.-+..|..+|.+|..++..|...|..
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~ 55 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVAR 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666665555443
No 65
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=44.63 E-value=27 Score=20.27 Aligned_cols=22 Identities=0% Similarity=0.157 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhHHHHhhhHh
Q psy524 58 SKLNEEIEMLSQQKTQLTHHIF 79 (111)
Q Consensus 58 ~~L~ekV~EL~rQK~QL~~hI~ 79 (111)
++|..+|+||=..|.-|...|.
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~ 24 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLA 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHH
Confidence 5788899999998888887764
No 66
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=44.16 E-value=26 Score=20.48 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhHHHHhhhH
Q psy524 58 SKLNEEIEMLSQQKTQLTHHI 78 (111)
Q Consensus 58 ~~L~ekV~EL~rQK~QL~~hI 78 (111)
++|..+|+||=..|+-|...|
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV 24 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEV 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHH
Confidence 578888888888888887655
No 67
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=43.50 E-value=1.1e+02 Score=23.64 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy524 13 ALQTMKDRCQLLQLRLSNLEEENLKLRID 41 (111)
Q Consensus 13 ALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~ 41 (111)
-+.-||+|+..|+..|....+|+..++.+
T Consensus 172 R~~~lK~kl~~l~~~L~~~~~e~~s~~~~ 200 (228)
T 3q0x_A 172 RLSEVKGTCHDLSDDLSRTRDDRDSMVAQ 200 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778999999999999888888777544
No 68
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=43.28 E-value=1.1e+02 Score=28.09 Aligned_cols=12 Identities=33% Similarity=0.277 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q psy524 57 VSKLNEEIEMLS 68 (111)
Q Consensus 57 ~~~L~ekV~EL~ 68 (111)
...|++++++|.
T Consensus 1032 ~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1032 NTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444443
No 69
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=42.97 E-value=19 Score=22.29 Aligned_cols=20 Identities=30% Similarity=0.391 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHhHhhhh
Q psy524 22 QLLQLRLSNLEEENLKLRID 41 (111)
Q Consensus 22 ~~LQ~Rl~~lEEEN~~LR~~ 41 (111)
-||...++++|.||-.|+-.
T Consensus 6 aqlenevaslenenetlkkk 25 (49)
T 3he5_A 6 AQLENEVASLENENETLKKK 25 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccHHHHHh
Confidence 37888999999999999754
No 70
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=42.49 E-value=28 Score=22.49 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=13.6
Q ss_pred HHHHHHhHHHHhhhHhHhhhchHH
Q psy524 64 IEMLSQQKTQLTHHIFMVATENKQ 87 (111)
Q Consensus 64 V~EL~rQK~QL~~hI~MVa~ENRq 87 (111)
...|+....+|-.+|.....||..
T Consensus 45 ~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 45 HSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455556666666666666554
No 71
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=41.56 E-value=39 Score=22.52 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy524 16 TMKDRCQLLQLRLSNLEEENLKLRID 41 (111)
Q Consensus 16 tmkeRC~~LQ~Rl~~lEEEN~~LR~~ 41 (111)
.|.+ |..+..|+..+|.+|..|+..
T Consensus 4 l~~e-~e~~~~klq~~E~rN~~Le~~ 28 (79)
T 3cvf_A 4 MAAE-REETQQKVQDLETRNAELEHQ 28 (79)
T ss_dssp -------CTTHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHhhhHHHHH
Confidence 3444 666777777777777776544
No 72
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=41.45 E-value=83 Score=21.53 Aligned_cols=11 Identities=27% Similarity=0.320 Sum_probs=4.0
Q ss_pred HHHHHHhHHHH
Q psy524 64 IEMLSQQKTQL 74 (111)
Q Consensus 64 V~EL~rQK~QL 74 (111)
.++|+..|..|
T Consensus 99 ~~~L~~~kkkl 109 (129)
T 2fxo_A 99 NAELTAKKRKL 109 (129)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 73
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=40.97 E-value=42 Score=20.09 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy524 16 TMKDRCQLLQLRLSNLEEENLKLRID 41 (111)
Q Consensus 16 tmkeRC~~LQ~Rl~~lEEEN~~LR~~ 41 (111)
=|-+|=+-|.+|+.+||..-..|...
T Consensus 13 el~~r~e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 13 DLNERSEDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 46678899999999999887777543
No 74
>2csf_A DNA-binding protein SATB2; CUT domain, special AT-rich sequence-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=40.75 E-value=11 Score=26.55 Aligned_cols=22 Identities=32% Similarity=0.703 Sum_probs=17.7
Q ss_pred hhchHHHHHHHhhhhhhcCCCc
Q psy524 82 ATENKQLWTKLSMLTEETNVPE 103 (111)
Q Consensus 82 a~ENRqLWsrLS~L~k~~n~~l 103 (111)
..+||.||..|+++-+-.+.|+
T Consensus 63 kP~~~~lW~~Lk~m~nWL~Lpe 84 (101)
T 2csf_A 63 SPENRTLWENLCTIRRFLNLPQ 84 (101)
T ss_dssp CTTCHHHHHHHHHHHHHHTSCH
T ss_pred CcchhhHHHHHHHHHHHHcCCH
Confidence 4589999999998887666664
No 75
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=40.48 E-value=35 Score=19.96 Aligned_cols=22 Identities=5% Similarity=0.113 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhHHHHhhhHh
Q psy524 58 SKLNEEIEMLSQQKTQLTHHIF 79 (111)
Q Consensus 58 ~~L~ekV~EL~rQK~QL~~hI~ 79 (111)
++|..+|+||=..|.-|...|.
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~ 25 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXA 25 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHH
Confidence 5788888888888888887764
No 76
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=40.38 E-value=35 Score=19.94 Aligned_cols=22 Identities=5% Similarity=0.164 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhHHHHhhhHh
Q psy524 58 SKLNEEIEMLSQQKTQLTHHIF 79 (111)
Q Consensus 58 ~~L~ekV~EL~rQK~QL~~hI~ 79 (111)
.+|..+|+||=..|+.|+..|.
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~ 25 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELA 25 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHH
Confidence 4788899999888888887764
No 77
>1r48_A Proline/betaine transporter; osmosensor, cytoplasmic, coiled-coil, antiparallel, two- stranded homodimer, transport protein; NMR {Synthetic} SCOP: h.4.15.1
Probab=39.40 E-value=37 Score=19.18 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHHhHHHHhhh
Q psy524 55 SLVSKLNEEIEMLSQQKTQLTHH 77 (111)
Q Consensus 55 sd~~~L~ekV~EL~rQK~QL~~h 77 (111)
-+++.+.++|++|.....+|.+|
T Consensus 8 ~~iedi~~ei~~l~~kr~~l~~q 30 (33)
T 1r48_A 8 QKIDDIDHEIADLQAKRTRLVQQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHc
Confidence 35777899999998877777765
No 78
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=39.40 E-value=77 Score=20.54 Aligned_cols=17 Identities=35% Similarity=0.364 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy524 17 MKDRCQLLQLRLSNLEE 33 (111)
Q Consensus 17 mkeRC~~LQ~Rl~~lEE 33 (111)
|-+|...|+.|++=.|.
T Consensus 12 le~Ri~~LE~klAfqE~ 28 (78)
T 3efg_A 12 LEARLVELETRLSFQEQ 28 (78)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44566666666655544
No 79
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=39.33 E-value=1.1e+02 Score=24.56 Aligned_cols=49 Identities=10% Similarity=0.081 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHh
Q psy524 16 TMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIF 79 (111)
Q Consensus 16 tmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~ 79 (111)
-|.++-.+|+..|...+++-..|+ ..+.+++++|.+|+.+-.+|.+++.
T Consensus 9 ~~~~~~~~~e~~i~~~~~~i~~L~---------------~~l~~~~~~i~~l~~~i~~l~~~~~ 57 (323)
T 1lwu_C 9 KILEEVRILEQIGVSHDAQIQELS---------------EMWRVNQQFVTRLQQQLVDIRQTCS 57 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555556555555555553 3445566677777666666666543
No 80
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=38.56 E-value=80 Score=20.53 Aligned_cols=64 Identities=19% Similarity=0.215 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHhH
Q psy524 9 ALQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIFM 80 (111)
Q Consensus 9 AL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~M 80 (111)
++.--|+.+++.-.........+|+.+..|-......... +....+..+.|..+|.+|..+|.=
T Consensus 18 ~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q--------l~eaEe~~~~L~~~K~eLE~~l~e 81 (89)
T 3bas_A 18 EQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS--------MKQLEDKVEELLSKNYHLENEVAR 81 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666677666664433221111 455677888899999999888753
No 81
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=38.51 E-value=35 Score=23.66 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHHHHHHhHHHHhhhHhH
Q psy524 54 ESLVSKLNEEIEMLSQQKTQLTHHIFM 80 (111)
Q Consensus 54 ~sd~~~L~ekV~EL~rQK~QL~~hI~M 80 (111)
..++..|+.+|++|.+....|.+.+.+
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~ 37 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRM 37 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777777777777777776654
No 82
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=38.46 E-value=29 Score=23.52 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHhHHHHhhhHh
Q psy524 59 KLNEEIEMLSQQKTQLTHHIF 79 (111)
Q Consensus 59 ~L~ekV~EL~rQK~QL~~hI~ 79 (111)
+|++.|++|..|+.+|...|.
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~ 25 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQ 25 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443
No 83
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=37.83 E-value=94 Score=21.10 Aligned_cols=81 Identities=16% Similarity=0.188 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhh-hhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHhHhh-----------
Q psy524 15 QTMKDRCQLLQLRLSNLEEENLKLRI-DKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIFMVA----------- 82 (111)
Q Consensus 15 qtmkeRC~~LQ~Rl~~lEEEN~~LR~-~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa----------- 82 (111)
++|.+=...++.=+..|++|-..|.. .... ....-..+-..|-.+++.+.++..++....++-+
T Consensus 11 ~~L~~~~~~l~~L~~lL~~E~~~L~~~~d~~----~L~~i~~~K~~ll~~L~~~~~~R~~~l~~lgl~~~~~g~~~~~~~ 86 (154)
T 3opc_A 11 SCLERENALVVEFLHALEAETEALMDRRAHE----SLQAAVQRKETLADDLAQLGAERDALLSGAGLASGPAGTDAAAAA 86 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhHHHHHHHh
Confidence 45555666677778899999888854 3221 0111123334455566666666666654433221
Q ss_pred -hchHHHHHHHhhhhhhc
Q psy524 83 -TENKQLWTKLSMLTEET 99 (111)
Q Consensus 83 -~ENRqLWsrLS~L~k~~ 99 (111)
.+=..+|..|..+.++|
T Consensus 87 ~~~l~~~w~~l~~l~~~c 104 (154)
T 3opc_A 87 HPELGPLWQALQANAAQA 104 (154)
T ss_dssp CGGGHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 12257899988877643
No 84
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=37.66 E-value=27 Score=23.18 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy524 9 ALQIALQTMKDRCQLLQLR 27 (111)
Q Consensus 9 AL~vALqtmkeRC~~LQ~R 27 (111)
|+.--=|+||+||.-|..=
T Consensus 23 AlkqsNq~mkeR~eeL~~w 41 (70)
T 3brv_B 23 AIRQSNQILRERCEELLHF 41 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444558999999998543
No 85
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=36.57 E-value=66 Score=19.55 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy524 7 NCALQIALQTMKDRCQLLQLRLSNLEE 33 (111)
Q Consensus 7 ~yAL~vALqtmkeRC~~LQ~Rl~~lEE 33 (111)
+=||+.=...||.|+..|+.+++.+..
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777788888888877777766654
No 86
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=36.47 E-value=50 Score=20.39 Aligned_cols=29 Identities=3% Similarity=0.067 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHhHHHHhhhHhHhhh
Q psy524 55 SLVSKLNEEIEMLSQQKTQLTHHIFMVAT 83 (111)
Q Consensus 55 sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ 83 (111)
.-+..|-.+|.+|+-+=.||...|.....
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667778888888888888887776554
No 87
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=36.39 E-value=1.1e+02 Score=24.92 Aligned_cols=32 Identities=16% Similarity=0.100 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy524 8 CALQIALQTMKDRCQLLQLRLSNLEEENLKLR 39 (111)
Q Consensus 8 yAL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR 39 (111)
-.|...|..+++|+..|++.+..+.+|+..++
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~ 37 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCK 37 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666667777777777776666666665554
No 88
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=35.86 E-value=90 Score=20.29 Aligned_cols=70 Identities=16% Similarity=0.141 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHh
Q psy524 10 LQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIF 79 (111)
Q Consensus 10 L~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~ 79 (111)
++--|..|||--.+.|.-+..+++--...-...+....++....-.++...-.++.++...|.+|+.+..
T Consensus 20 l~r~~~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~l~~I~~~~~~~~~l~dEKv~lA~~~~ 89 (104)
T 4afl_A 20 LQRNFQLMRDLDQRTEDLKAEIDKLATEYMSSARSLSSEEKLALLKQIQEAYGKCKEFGDDKVQLAMQTY 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677887666666655555553322211111111111112234566666778899999999998864
No 89
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=35.39 E-value=66 Score=18.59 Aligned_cols=28 Identities=29% Similarity=0.269 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy524 13 ALQTMKDRCQLLQLRLSNLEEENLKLRI 40 (111)
Q Consensus 13 ALqtmkeRC~~LQ~Rl~~lEEEN~~LR~ 40 (111)
.+|++.+|=-..=.|+-.||.+|..|..
T Consensus 7 ~mq~LNdrlAsyidkVR~LE~~N~~Le~ 34 (39)
T 1gk7_A 7 ELQELNDRFANYIDKVRFLEQQNKILLA 34 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777765555778888888888754
No 90
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=35.38 E-value=1.1e+02 Score=21.09 Aligned_cols=33 Identities=9% Similarity=0.118 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy524 9 ALQIALQTMKDRCQLLQLRLSNLEEENLKLRID 41 (111)
Q Consensus 9 AL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~ 41 (111)
-+.-|...++.|...|..++..+++.-..+|..
T Consensus 95 ~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~ 127 (151)
T 2zdi_C 95 SIDEAISFLEKRLKEYDEAIKKTQGALAELEKR 127 (151)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356689999999999999999999988888654
No 91
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=35.18 E-value=64 Score=22.90 Aligned_cols=59 Identities=20% Similarity=0.276 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHh----hhhhhc-----cccccc--CCchhhHHHHHHHHHHHHHhHHHHhhhH
Q psy524 17 MKDRCQLLQLRLSNLEEENLKL----RIDKKK-----SETNEK--EPKESLVSKLNEEIEMLSQQKTQLTHHI 78 (111)
Q Consensus 17 mkeRC~~LQ~Rl~~lEEEN~~L----R~~~~~-----~~~~~~--~~~~sd~~~L~ekV~EL~rQK~QL~~hI 78 (111)
+.+=-+.||.-+...|-.-..- +-+... |+.+.. ..-++.|+.|+.||+||.+| |.+-|
T Consensus 33 tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrq---LAd~v 102 (107)
T 2k48_A 33 TMSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQ---LADLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 3344567888888888765543 333222 222211 14577899999999999765 44443
No 92
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=35.06 E-value=1.4e+02 Score=22.17 Aligned_cols=55 Identities=18% Similarity=0.228 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhh
Q psy524 7 NCALQIALQTMKDRCQLLQ-------LRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTH 76 (111)
Q Consensus 7 ~yAL~vALqtmkeRC~~LQ-------~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~ 76 (111)
.-.|...+..++.||.+|. +-+..+-.|...|+++ +..+++++..|++...+|.+
T Consensus 70 I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq---------------~n~lE~kl~kLq~EN~~LV~ 131 (152)
T 3a7p_A 70 LAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIE---------------NNVLQQKLSDLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHH
Confidence 4567778888889998888 4456666777777554 56677888888887777654
No 93
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=34.62 E-value=48 Score=26.88 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhHHHHhhhHhHhhhchHHHHHHHhhhh
Q psy524 59 KLNEEIEMLSQQKTQLTHHIFMVATENKQLWTKLSMLT 96 (111)
Q Consensus 59 ~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWsrLS~L~ 96 (111)
.|++.|.++...-..|.++..-=..+-|.|.+.+..+.
T Consensus 21 ~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 21 ALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44445555555555555555544555677777776664
No 94
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=34.24 E-value=1.1e+02 Score=24.10 Aligned_cols=61 Identities=16% Similarity=0.317 Sum_probs=33.2
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhH
Q psy524 10 LQIALQTMKDR----CQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHI 78 (111)
Q Consensus 10 L~vALqtmkeR----C~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI 78 (111)
+...+|-.++| +...|.++..++|||.+++-.-... .-.+..-++...++..+|.-|.+|.
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (487)
T 3oja_A 422 MYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEA--------DLALASANATLQELVVREQNLASQL 486 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhh--------hhhhHhcccHHHHHHHHHHHHHHhc
Confidence 44444444433 3344667777777777775442211 1133344556666777777776664
No 95
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=33.22 E-value=79 Score=21.36 Aligned_cols=57 Identities=19% Similarity=0.142 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhccc----ccccCCchhhHHHHHHHHHHHHHhHHHHh
Q psy524 19 DRCQLLQLRLSNLEEENLKLRIDKKKSE----TNEKEPKESLVSKLNEEIEMLSQQKTQLT 75 (111)
Q Consensus 19 eRC~~LQ~Rl~~lEEEN~~LR~~~~~~~----~~~~~~~~sd~~~L~ekV~EL~rQK~QL~ 75 (111)
.|+..||+.|..++.|-.+-.-+....+ .-..++.-+|..++..++.|..+.-..|.
T Consensus 15 qRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~ 75 (98)
T 2ke4_A 15 QQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLK 75 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999998776533321100 00001333445555666666655444443
No 96
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=32.57 E-value=59 Score=18.94 Aligned_cols=23 Identities=4% Similarity=0.164 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhHHHHhhhHhH
Q psy524 58 SKLNEEIEMLSQQKTQLTHHIFM 80 (111)
Q Consensus 58 ~~L~ekV~EL~rQK~QL~~hI~M 80 (111)
.+|..||+||-..|.-|...|.=
T Consensus 4 nQledKvEel~~~~~~l~nEv~R 26 (34)
T 2r2v_A 4 KQVADKLEEVASKLYHNANELAR 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHH
Confidence 57888999999999888887753
No 97
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=32.05 E-value=86 Score=21.96 Aligned_cols=31 Identities=23% Similarity=0.218 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy524 8 CALQIALQTMKDRCQLLQLRLSNLEEENLKL 38 (111)
Q Consensus 8 yAL~vALqtmkeRC~~LQ~Rl~~lEEEN~~L 38 (111)
-.|+-=+.+++..+..|+.+|--||-.|+-|
T Consensus 38 ~~Lq~El~~lr~~~~~l~~~iReLEq~NDDL 68 (111)
T 2v66_B 38 SVLEDDLSQTRAIKEQLHKYVRELEQANDDL 68 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 3577778899999999999999999999988
No 98
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=32.02 E-value=83 Score=25.30 Aligned_cols=81 Identities=15% Similarity=0.127 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhh-HhHhhhch------H
Q psy524 14 LQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHH-IFMVATEN------K 86 (111)
Q Consensus 14 LqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~h-I~MVa~EN------R 86 (111)
-+++-++-+.|=.++..+-..-..+|......... .-.+++.|-++|++|++|=.+.+-. -+ ..-| -
T Consensus 66 R~~vl~~a~~La~~~n~~~~~L~~~~~~~n~~i~~----~V~~iN~l~~qIa~LN~qI~~~~~~~~g--~~~ndLlDqRD 139 (463)
T 2d4y_A 66 RQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGS----SVAQINNYAKQIANLNDQISRMTGVGAG--ASPNDLLDQRD 139 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHC----------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhccCCC--CCchHhHHHHH
Confidence 34444555555555555555555555544433332 3568889999999999886543210 01 1223 4
Q ss_pred HHHHHHhhhhhhcCC
Q psy524 87 QLWTKLSMLTEETNV 101 (111)
Q Consensus 87 qLWsrLS~L~k~~n~ 101 (111)
+|=..||++.. ++.
T Consensus 140 ~ll~eLS~~v~-v~v 153 (463)
T 2d4y_A 140 QLVSELNKIVG-VEV 153 (463)
T ss_dssp HHHHHHHHHSC-EEE
T ss_pred HHHHHHHhhcC-eEE
Confidence 67788888877 543
No 99
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=31.57 E-value=28 Score=19.84 Aligned_cols=18 Identities=39% Similarity=0.482 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhHhhh
Q psy524 23 LLQLRLSNLEEENLKLRI 40 (111)
Q Consensus 23 ~LQ~Rl~~lEEEN~~LR~ 40 (111)
||..-++++|-||-+|+.
T Consensus 3 qlnallasleaenkqlka 20 (31)
T 1p9i_A 3 QLNALLASLEAENKQLKA 20 (31)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466678889999987754
No 100
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=31.17 E-value=77 Score=18.15 Aligned_cols=18 Identities=44% Similarity=0.482 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy524 17 MKDRCQLLQLRLSNLEEE 34 (111)
Q Consensus 17 mkeRC~~LQ~Rl~~lEEE 34 (111)
+..=-|.||.|+.-+|+-
T Consensus 11 l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 11 LNAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333457888888888874
No 101
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=30.11 E-value=64 Score=18.79 Aligned_cols=22 Identities=5% Similarity=0.308 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhHHHHhhhHh
Q psy524 58 SKLNEEIEMLSQQKTQLTHHIF 79 (111)
Q Consensus 58 ~~L~ekV~EL~rQK~QL~~hI~ 79 (111)
++|..+|+||=..|.-|...|.
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~ 25 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELA 25 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHH
Confidence 4678888888888887776653
No 102
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=30.08 E-value=1.4e+02 Score=20.82 Aligned_cols=41 Identities=20% Similarity=0.200 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHHHHHhhh
Q psy524 55 SLVSKLNEEIEMLSQQKTQLTHHIFMVATENKQLWTKLSML 95 (111)
Q Consensus 55 sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWsrLS~L 95 (111)
.-+.+|+.+|.+|.-+-..=.++......||-+|=.-+..+
T Consensus 40 ~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 40 RVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555444455555555555555544433
No 103
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=29.80 E-value=87 Score=24.82 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHHHHHhhhhh
Q psy524 56 LVSKLNEEIEMLSQQKTQLTHHIFMVATENKQLWTKLSMLTE 97 (111)
Q Consensus 56 d~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWsrLS~L~k 97 (111)
.+..|+.++..|+.+...|.+-+.=--.|..+|=..|.+|..
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445566666666666665555544444444444444444433
No 104
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=29.77 E-value=46 Score=21.28 Aligned_cols=30 Identities=33% Similarity=0.468 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q psy524 9 ALQIALQTMKDRCQLLQLRLSNLEEENLKLRIDK 42 (111)
Q Consensus 9 AL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~ 42 (111)
-|.-|..-|+ .||..+..|++||..|+..-
T Consensus 44 IL~~Ai~YI~----~Lq~~~~~L~~e~~~L~~~~ 73 (82)
T 1am9_A 44 VLRKAIDYIR----FLQHSNQKLKQENLSLRTAV 73 (82)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 3455555554 58999999999999998754
No 105
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=29.38 E-value=94 Score=25.37 Aligned_cols=54 Identities=20% Similarity=0.231 Sum_probs=35.2
Q ss_pred HHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHHHHHhhhhh
Q psy524 29 SNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIFMVATENKQLWTKLSMLTE 97 (111)
Q Consensus 29 ~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWsrLS~L~k 97 (111)
..||+|...||.. ...|++++.++......+.+++.--..+-|+|.+.+-.+..
T Consensus 6 ~~l~~el~~~~~~---------------~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 6 AALSTEVVHLRQR---------------TEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp HHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4566666666543 33455566666666666666666667788888888877654
No 106
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=29.32 E-value=38 Score=22.76 Aligned_cols=49 Identities=16% Similarity=0.284 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhH----hhhhhhc-----cccccc--CCchhhHHHHHHHHHHHHHh
Q psy524 22 QLLQLRLSNLEEENLK----LRIDKKK-----SETNEK--EPKESLVSKLNEEIEMLSQQ 70 (111)
Q Consensus 22 ~~LQ~Rl~~lEEEN~~----LR~~~~~-----~~~~~~--~~~~sd~~~L~ekV~EL~rQ 70 (111)
+.||.-+...|-.-.. |+-.... |+.+.. ..-++.|+.|+.||+||.+|
T Consensus 8 ~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrq 67 (78)
T 2ic6_A 8 KEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRE 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666665443 3322222 222211 14567899999999999775
No 107
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=29.15 E-value=60 Score=19.65 Aligned_cols=22 Identities=18% Similarity=0.375 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHhHHHHhh
Q psy524 55 SLVSKLNEEIEMLSQQKTQLTH 76 (111)
Q Consensus 55 sd~~~L~ekV~EL~rQK~QL~~ 76 (111)
-|+..-+++|.+|++...+|++
T Consensus 16 rEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 16 REITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3677788899999998888875
No 108
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=28.96 E-value=1e+02 Score=23.01 Aligned_cols=43 Identities=16% Similarity=0.307 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHHHHHhhhhh
Q psy524 55 SLVSKLNEEIEMLSQQKTQLTHHIFMVATENKQLWTKLSMLTE 97 (111)
Q Consensus 55 sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWsrLS~L~k 97 (111)
.-.+.|++.+.+|...|.+|.+.+..-+.+||.|=..++.|+-
T Consensus 96 ~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKP 138 (170)
T 3l4q_C 96 LNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKP 138 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 3455799999999999999999999999999999888887753
No 109
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=28.57 E-value=76 Score=18.60 Aligned_cols=18 Identities=11% Similarity=0.143 Sum_probs=12.3
Q ss_pred hhhHHHHHHHHHHHHHhH
Q psy524 54 ESLVSKLNEEIEMLSQQK 71 (111)
Q Consensus 54 ~sd~~~L~ekV~EL~rQK 71 (111)
..+++..++.|.++..|.
T Consensus 39 ~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 39 FEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456777777777776654
No 110
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=28.05 E-value=57 Score=19.07 Aligned_cols=19 Identities=42% Similarity=0.473 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHhHhhh
Q psy524 22 QLLQLRLSNLEEENLKLRI 40 (111)
Q Consensus 22 ~~LQ~Rl~~lEEEN~~LR~ 40 (111)
..|+.|+..||.....|+.
T Consensus 47 ~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 47 QQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3466667777766666654
No 111
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=27.89 E-value=1.4e+02 Score=20.14 Aligned_cols=7 Identities=57% Similarity=0.472 Sum_probs=3.0
Q ss_pred HHHHHHH
Q psy524 9 ALQIALQ 15 (111)
Q Consensus 9 AL~vALq 15 (111)
||.-||+
T Consensus 40 AL~eaL~ 46 (83)
T 1uii_A 40 ALYEALK 46 (83)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 112
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=27.74 E-value=1.1e+02 Score=18.72 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHhh
Q psy524 18 KDRCQLLQLRLSNLEEENLKLR 39 (111)
Q Consensus 18 keRC~~LQ~Rl~~lEEEN~~LR 39 (111)
.+|--.|++++..|-.-|-+|=
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~ 29 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLM 29 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555678999999999998883
No 113
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=26.83 E-value=86 Score=19.23 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=19.7
Q ss_pred hhhHHHHHHHHHHHHHhHHHHhhhH
Q psy524 54 ESLVSKLNEEIEMLSQQKTQLTHHI 78 (111)
Q Consensus 54 ~sd~~~L~ekV~EL~rQK~QL~~hI 78 (111)
.+.++.|..+++++++.-++|+.+|
T Consensus 22 ~~~l~~Lt~kL~~vt~rle~lEnrl 46 (47)
T 1aq5_A 22 EELINTLQQKLEAVAKRIEALENKI 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4577888888888888888886654
No 114
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=26.54 E-value=2.1e+02 Score=21.59 Aligned_cols=29 Identities=7% Similarity=0.066 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy524 13 ALQTMKDRCQLLQLRLSNLEEENLKLRID 41 (111)
Q Consensus 13 ALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~ 41 (111)
.+.--|+++.+++.++..||.|-.-....
T Consensus 11 e~~ywk~~~~~~~q~~~~le~El~EFqes 39 (189)
T 2v71_A 11 ETAYWKELSMKYKQSFQEARDELVEFQEG 39 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556788888888888888887776554
No 115
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=25.32 E-value=3.1e+02 Score=23.17 Aligned_cols=47 Identities=15% Similarity=0.163 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHHHHHhhhhhhcCCCcc
Q psy524 57 VSKLNEEIEMLSQQKTQLTHHIFMVATENKQLWTKLSMLTEETNVPEQ 104 (111)
Q Consensus 57 ~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWsrLS~L~k~~n~~lg 104 (111)
...|.+++.+|..+-..|...+.-+..+=..+..+|--|.. -.+|.|
T Consensus 73 ~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~~-~~vP~g 119 (485)
T 3qne_A 73 AKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNIVH-ESVVDS 119 (485)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCC-TTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-ccCCCC
Confidence 44566677777776666666666666655566666666666 567776
No 116
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=24.75 E-value=55 Score=21.41 Aligned_cols=22 Identities=14% Similarity=0.363 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhHHHHhhhH
Q psy524 57 VSKLNEEIEMLSQQKTQLTHHI 78 (111)
Q Consensus 57 ~~~L~ekV~EL~rQK~QL~~hI 78 (111)
+..||.+|..++..|.+|.-+|
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~ 23 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVER 23 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHH
Confidence 4568888888888888876544
No 117
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=24.29 E-value=2.3e+02 Score=22.34 Aligned_cols=74 Identities=12% Similarity=0.175 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcc--cccccC-----CchhhHHHHHHHHHHHHHhHHHHhhhHhHh
Q psy524 9 ALQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKS--ETNEKE-----PKESLVSKLNEEIEMLSQQKTQLTHHIFMV 81 (111)
Q Consensus 9 AL~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~--~~~~~~-----~~~sd~~~L~ekV~EL~rQK~QL~~hI~MV 81 (111)
.|+.-|.++++.=..+++.+..-++|--.|+-.--.. .....+ +..--+..+..+|..|.++.-+|.-++-|+
T Consensus 306 ~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~q~~~~ 385 (406)
T 4dyl_A 306 SVQHTLTSVTDELAVATEMVFRRQEMVTQLQQELRNEEENTHPRERVQLLGKRQVLQEALQGLQVALCSQAKLQAQQELL 385 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4555666666666666665555554444443222111 111100 111122344456677777777777777665
Q ss_pred h
Q psy524 82 A 82 (111)
Q Consensus 82 a 82 (111)
-
T Consensus 386 ~ 386 (406)
T 4dyl_A 386 Q 386 (406)
T ss_dssp H
T ss_pred H
Confidence 4
No 118
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=23.43 E-value=2.5e+02 Score=25.46 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy524 13 ALQTMKDRCQLLQLRLSNLEEENLKLR 39 (111)
Q Consensus 13 ALqtmkeRC~~LQ~Rl~~lEEEN~~LR 39 (111)
.+..+.+....++.++..++++-..++
T Consensus 872 ~L~~le~~l~ele~~l~~Le~e~~~l~ 898 (1184)
T 1i84_S 872 RQQKAEAELKELEQKHTQLCEEKNLLQ 898 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443333
No 119
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=23.03 E-value=47 Score=18.93 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHhHHHHhhhHh
Q psy524 55 SLVSKLNEEIEMLSQQKTQLTHHIF 79 (111)
Q Consensus 55 sd~~~L~ekV~EL~rQK~QL~~hI~ 79 (111)
+.+..++.||..|..|+.++.+.+.
T Consensus 4 ~~i~avKkKiq~lq~q~d~aee~~~ 28 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLENEVA 28 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999988888877654
No 120
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=22.99 E-value=1.1e+02 Score=20.51 Aligned_cols=20 Identities=5% Similarity=0.114 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy524 8 CALQIALQTMKDRCQLLQLR 27 (111)
Q Consensus 8 yAL~vALqtmkeRC~~LQ~R 27 (111)
+++|...+.||+-+..++++
T Consensus 68 ~~lH~~V~~~Ke~Yl~~rr~ 87 (93)
T 3t98_B 68 QSIHENVKVLKEQYLSYRKM 87 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444445444444443
No 121
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=22.47 E-value=59 Score=20.62 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhh
Q psy524 20 RCQLLQLRLSNLEEENLKLRIDK 42 (111)
Q Consensus 20 RC~~LQ~Rl~~lEEEN~~LR~~~ 42 (111)
+..||=+.++.|-.||..||-.-
T Consensus 4 sYdQL~~QVe~Lk~ENshLrrEL 26 (54)
T 1deb_A 4 SYDQLLKQVEALKMENSNLRQEL 26 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHH
Confidence 35688889999999999998763
No 122
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=22.00 E-value=60 Score=22.56 Aligned_cols=55 Identities=18% Similarity=0.282 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHhH----hhhhhhc-----cccccc--CCchhhHHHHHHHHHHHHHhHHHHhhhHh
Q psy524 22 QLLQLRLSNLEEENLK----LRIDKKK-----SETNEK--EPKESLVSKLNEEIEMLSQQKTQLTHHIF 79 (111)
Q Consensus 22 ~~LQ~Rl~~lEEEN~~----LR~~~~~-----~~~~~~--~~~~sd~~~L~ekV~EL~rQK~QL~~hI~ 79 (111)
+.||.-+...|-.-.. |+-.... ++.|.. ..-++.|..|+.||++|.+| |.+.|.
T Consensus 8 ~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~---lAd~v~ 73 (96)
T 2ic9_A 8 KEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRE---LADLIA 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHh
Confidence 3566666666665443 3322222 222211 14567899999999999764 555443
No 123
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=21.72 E-value=2e+02 Score=21.14 Aligned_cols=69 Identities=29% Similarity=0.337 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHhHhhhchHH
Q psy524 16 TMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIFMVATENKQ 87 (111)
Q Consensus 16 tmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRq 87 (111)
..+++-..|..+++.++.|..+|...-........ .-.+....+...+++|+-. =..+=--||+.+++.
T Consensus 41 ~~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~-~aE~~~~~ie~ElEeLTas--LFeEAN~MVa~ar~~ 109 (154)
T 2ocy_A 41 QLKEDYNTLKRELSDRDDEVKRLREDIAKENELRT-KAEEEADKLNKEVEDLTAS--LFDEANNMVADARKE 109 (154)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH-HHHTHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 34444444555555555555555333222111100 0123444555566666542 233444588887654
No 124
>3o3m_B Beta subunit 2-hydroxyacyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_B* 3o3o_B
Probab=21.39 E-value=2.2e+02 Score=22.32 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHhHHHH---------hhhHhHhhhchHHHHHHHhhhhh
Q psy524 56 LVSKLNEEIEMLSQQKTQL---------THHIFMVATENKQLWTKLSMLTE 97 (111)
Q Consensus 56 d~~~L~ekV~EL~rQK~QL---------~~hI~MVa~ENRqLWsrLS~L~k 97 (111)
.+.-+.+++.+|-+.=++. ....-=+.|++|.+|.++..|.+
T Consensus 132 ~~~y~~~el~~l~~~LE~~tG~~i~~e~L~eai~~~N~~r~~~~~~~~l~~ 182 (385)
T 3o3m_B 132 GVKYLISEYKGVKRELEEICGYEIEEAKIHESIEVYNEHRKTMRDFVEVAY 182 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555565555554443322 12233478999999999999999
No 125
>4a04_A T-box transcription factor TBX1; transcription, T-box proteins; HET: DNA; 2.58A {Homo sapiens}
Probab=21.32 E-value=25 Score=26.38 Aligned_cols=18 Identities=39% Similarity=0.630 Sum_probs=15.4
Q ss_pred hhhchHHHHHHHhhhhhh
Q psy524 81 VATENKQLWTKLSMLTEE 98 (111)
Q Consensus 81 Va~ENRqLWsrLS~L~k~ 98 (111)
|+-||+.||.+...+..|
T Consensus 18 V~Le~~~LW~~Fh~~~tE 35 (203)
T 4a04_A 18 VQLEMKALWDEFNQLGTE 35 (203)
T ss_dssp EEETTHHHHHHHHHHCCE
T ss_pred EEeCCHHHHHhhCcCCCe
Confidence 788999999999988553
No 126
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A
Probab=21.09 E-value=1.6e+02 Score=22.68 Aligned_cols=33 Identities=15% Similarity=0.258 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHH
Q psy524 16 TMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLS 68 (111)
Q Consensus 16 tmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~ 68 (111)
.+++||.+++..++.- ...-|-++|+|.++-|+
T Consensus 163 ~I~~Rv~qIr~qie~t--------------------~S~ydkEKLqERLAKLs 195 (201)
T 3osx_A 163 AIAARVTQIRQQIEES--------------------TSDYDREKLQERVAKLA 195 (201)
T ss_dssp HHHHHHHHHHHHHHTC--------------------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc--------------------CCHHHHHHHHHHHHHHc
Confidence 4678888888776530 11345667888877765
No 127
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=21.03 E-value=1.8e+02 Score=19.68 Aligned_cols=30 Identities=20% Similarity=0.233 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy524 10 LQIALQTMKDRCQLLQLRLSNLEEENLKLR 39 (111)
Q Consensus 10 L~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR 39 (111)
+.-.++-.+++...|+.++..+|+|.-+.|
T Consensus 87 l~~~~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 87 WKKKYEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455556666667777777777665554
No 128
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=20.38 E-value=87 Score=23.75 Aligned_cols=33 Identities=30% Similarity=0.404 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHHHHH
Q psy524 56 LVSKLNEEIEMLSQQKTQLTHHIFMVATENKQLWTKL 92 (111)
Q Consensus 56 d~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWsrL 92 (111)
+.+.|++++++|..+..++.. ...||.+|-.-|
T Consensus 27 eN~~Lk~e~~~l~~~~~~~~~----l~~En~rLr~lL 59 (255)
T 2j5u_A 27 ENQHLKERLEELAQLESEVAD----LKKENKDLKESL 59 (255)
T ss_dssp TTTTHHHHHHHHHHHHHHHHH----HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHh
Confidence 344455566666555554443 234777665443
No 129
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=20.33 E-value=3.6e+02 Score=22.11 Aligned_cols=48 Identities=15% Similarity=0.153 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHHHHHhhhhhhcCCCcc
Q psy524 56 LVSKLNEEIEMLSQQKTQLTHHIFMVATENKQLWTKLSMLTEETNVPEQ 104 (111)
Q Consensus 56 d~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWsrLS~L~k~~n~~lg 104 (111)
+...|.+++.+|..+-..|.....-+..+=..+..+|--|.. -.+|.|
T Consensus 70 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~-~~vP~g 117 (455)
T 2dq0_A 70 PVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNITH-PSVPVG 117 (455)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCC-TTSCCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-ccCCCC
Confidence 445677777777777777777777777766677777777776 577777
Done!