Query psy524
Match_columns 111
No_of_seqs 22 out of 24
Neff 2.9
Searched_HMMs 13730
Date Fri Aug 16 21:18:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy524.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/524hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uklc_ a.38.1.1 (C:) SREBP-2 60.8 7.3 0.00053 22.3 4.4 29 10-42 28-56 (61)
2 d1nkpa_ a.38.1.1 (A:) Myc prot 55.4 18 0.0013 21.6 8.4 72 26-97 16-87 (88)
3 d2azeb1 e.63.1.2 (B:201-301) T 46.9 13 0.00095 23.8 4.2 30 57-86 3-32 (101)
4 d2jn6a1 a.4.1.19 (A:1-89) Unch 39.9 6.5 0.00047 23.5 1.7 20 24-43 64-83 (89)
5 d1nkpa_ a.38.1.1 (A:) Myc prot 33.5 32 0.0023 20.3 4.3 20 58-77 55-74 (88)
6 d2fupa1 a.47.5.1 (A:1-130) Hyp 32.1 51 0.0037 20.1 7.3 80 14-97 8-102 (130)
7 d1vqov1 a.2.2.1 (V:1-65) Ribos 30.1 48 0.0035 19.2 5.7 43 22-67 14-56 (65)
8 d1r73a_ a.2.2.1 (A:) Ribosomal 24.1 63 0.0046 18.6 5.5 42 22-67 12-53 (66)
9 d2gycw1 a.2.2.1 (W:1-60) Ribos 21.8 68 0.0049 18.1 4.5 42 22-67 12-53 (60)
10 d1b4fa_ a.60.1.2 (A:) EphB2 re 21.2 63 0.0046 18.2 3.9 23 3-25 51-73 (74)
No 1
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=60.82 E-value=7.3 Score=22.34 Aligned_cols=29 Identities=31% Similarity=0.445 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q psy524 10 LQIALQTMKDRCQLLQLRLSNLEEENLKLRIDK 42 (111)
Q Consensus 10 L~vALqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~ 42 (111)
|.-|.+.++ .||.++..|++||..||...
T Consensus 28 L~~Ai~YI~----~Lq~~~~~L~~e~~~L~~~~ 56 (61)
T d1uklc_ 28 LRKAIDYIK----YLQQVNHKLRQENMVLKLAN 56 (61)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 555666655 48999999999999998764
No 2
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.36 E-value=18 Score=21.58 Aligned_cols=72 Identities=25% Similarity=0.261 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHhHhhhchHHHHHHHhhhhh
Q psy524 26 LRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIFMVATENKQLWTKLSMLTE 97 (111)
Q Consensus 26 ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~ENRqLWsrLS~L~k 97 (111)
+|-..|=+--..||.--+....+...++.+-+..--+-|..|+++...|...+.....+|..|=.+|+.|..
T Consensus 16 ~RR~~in~~f~~Lr~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~g 87 (88)
T d1nkpa_ 16 QRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455555555555665544332222223344444444456666666667777777777788888888887754
No 3
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.87 E-value=13 Score=23.79 Aligned_cols=30 Identities=20% Similarity=0.407 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhHHHHhhhHhHhhhchH
Q psy524 57 VSKLNEEIEMLSQQKTQLTHHIFMVATENK 86 (111)
Q Consensus 57 ~~~L~ekV~EL~rQK~QL~~hI~MVa~ENR 86 (111)
+..|++.|+.|..+-..|-+||..+.-.=|
T Consensus 3 ~~~L~~El~~L~~~E~~LD~li~~~~~~L~ 32 (101)
T d2azeb1 3 LEGLTQDLRQLQESEQQLDHLMNICTTQLR 32 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777766654433
No 4
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=39.86 E-value=6.5 Score=23.53 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhHhhhhhh
Q psy524 24 LQLRLSNLEEENLKLRIDKK 43 (111)
Q Consensus 24 LQ~Rl~~lEEEN~~LR~~~~ 43 (111)
.+++|..||.||..||....
T Consensus 64 ~~~ei~~L~~En~~Lk~~~~ 83 (89)
T d2jn6a1 64 EAEQIRQLKKENALQRARTR 83 (89)
T ss_dssp THHHHHHHHHCGGGGGGTTS
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999997643
No 5
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.49 E-value=32 Score=20.35 Aligned_cols=20 Identities=15% Similarity=0.175 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHhHHHHhhh
Q psy524 58 SKLNEEIEMLSQQKTQLTHH 77 (111)
Q Consensus 58 ~~L~ekV~EL~rQK~QL~~h 77 (111)
..|++++.+|..++.+|..+
T Consensus 55 ~~L~~~~~~l~~~~~~l~~~ 74 (88)
T d1nkpa_ 55 LSVQAEEQKLISEEDLLRKR 74 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444433333333333
No 6
>d2fupa1 a.47.5.1 (A:1-130) Hypothetical protein PA3352 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=32.07 E-value=51 Score=20.11 Aligned_cols=80 Identities=13% Similarity=0.036 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHHHHhHHHHhhhHhHhhh----------
Q psy524 14 LQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIFMVAT---------- 83 (111)
Q Consensus 14 LqtmkeRC~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL~rQK~QL~~hI~MVa~---------- 83 (111)
++.|++-+..++.=+..+++|=..|....... ...-......+=.++..+.++..++....+.-+.
T Consensus 8 ~~~L~~e~~~~~~L~~LL~~e~~aL~~~d~~~----Le~l~~~k~~ll~~l~~~~~~R~~~l~~~g~~~~~~~~~~l~~~ 83 (130)
T d2fupa1 8 LDLFAEDIGHANQLLQLVDEEFQALERRELPV----LQQLLGAKQPLMQQLERNGRARAEILREAGVSLDREGLARYARE 83 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHhhc
Confidence 46788889999999999999977774432210 0011223334445566666666666666553211
Q ss_pred --c---hHHHHHHHhhhhh
Q psy524 84 --E---NKQLWTKLSMLTE 97 (111)
Q Consensus 84 --E---NRqLWsrLS~L~k 97 (111)
+ =..+|..|..+..
T Consensus 84 ~~~~~~l~~~~~~L~~l~~ 102 (130)
T d2fupa1 84 RADGAELLARGDELGELLE 102 (130)
T ss_dssp CTTHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHH
Confidence 1 1357888777664
No 7
>d1vqov1 a.2.2.1 (V:1-65) Ribosomal protein L29 (L29p) {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=30.13 E-value=48 Score=19.19 Aligned_cols=43 Identities=16% Similarity=0.201 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHH
Q psy524 22 QLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEML 67 (111)
Q Consensus 22 ~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL 67 (111)
..|+..+..+.+|-..||..+....+. ++.+.+...+-.|+-+
T Consensus 14 ~eL~~~l~elk~El~~LR~~q~~~gql---~~~~~ik~~Rk~IARi 56 (65)
T d1vqov1 14 AEREAELDDLKTELLNARAVQAAGGAP---ENPGRIKELRKAIARI 56 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSS---CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC---CchHHHHHHHHHHHHH
Confidence 468899999999999999644322222 2467788888877754
No 8
>d1r73a_ a.2.2.1 (A:) Ribosomal protein L29 (L29p) {Thermotoga maritima [TaxId: 2336]}
Probab=24.13 E-value=63 Score=18.61 Aligned_cols=42 Identities=17% Similarity=0.233 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHH
Q psy524 22 QLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEML 67 (111)
Q Consensus 22 ~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL 67 (111)
..|+..+..+.+|-..||...+...- ++++.+..++-.|+-+
T Consensus 12 ~eL~~~l~~l~~el~~LRfq~~~gql----~~~~~i~~~Rk~IARi 53 (66)
T d1r73a_ 12 EELKNLLEEKKRQLMELRFQLAMGQL----KNTSLIKLTKRDIARI 53 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCC----CChHHHHHHHHHHHHH
Confidence 46899999999999999988654221 3578888888888755
No 9
>d2gycw1 a.2.2.1 (W:1-60) Ribosomal protein L29 (L29p) {Escherichia coli [TaxId: 562]}
Probab=21.77 E-value=68 Score=18.09 Aligned_cols=42 Identities=19% Similarity=0.370 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhcccccccCCchhhHHHHHHHHHHH
Q psy524 22 QLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEML 67 (111)
Q Consensus 22 ~~LQ~Rl~~lEEEN~~LR~~~~~~~~~~~~~~~sd~~~L~ekV~EL 67 (111)
..|...+..+.+|-..||.+.....- .+++.+..++-.|+-+
T Consensus 12 ~eL~~~l~~l~~el~~lRfq~~~gql----~~~~~i~~~Rk~IARi 53 (60)
T d2gycw1 12 EELNTELLNLLREQFNLRMQAASGQL----QQSHLLKQVRRDVARV 53 (60)
T ss_dssp HHHHHHHHHHHHHHHHCCCSTTTCSS----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCC----CchHHHHHHHHHHHHH
Confidence 46888999999999999987664321 3578888888888765
No 10
>d1b4fa_ a.60.1.2 (A:) EphB2 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.23 E-value=63 Score=18.17 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=17.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH
Q psy524 3 STTSNCALQIALQTMKDRCQLLQ 25 (111)
Q Consensus 3 ~~~s~yAL~vALqtmkeRC~~LQ 25 (111)
+++---.+.-|++.||++++++|
T Consensus 51 ~~ghr~ril~~i~~Lr~~~~~~~ 73 (74)
T d1b4fa_ 51 LAGHQKKILNSIQVMRAQMNQIQ 73 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHhc
Confidence 34445577889999999998886
Done!