RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy524
(111 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 5e-04
Identities = 18/140 (12%), Positives = 43/140 (30%), Gaps = 47/140 (33%)
Query: 14 LQTMKDRCQLLQL--------RLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIE 65
C++L LS ++ L + T E K L+ L+ +
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISL-DHHSMTLT-PDEVKSLLLKYLDCRPQ 316
Query: 66 MLSQQKTQLTH--HIFMVA----------------------------------TENKQLW 89
L ++ T+ + ++A E ++++
Sbjct: 317 DLPREVLT-TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 90 TKLSMLTEETNVPEQSINLV 109
+LS+ ++P ++L+
Sbjct: 376 DRLSVFPPSAHIPTILLSLI 395
Score = 28.3 bits (62), Expect = 0.52
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 22 QLLQLRLSNLEEENLKLRIDK--KKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIF 79
LL L ++ + ++ + ++K K S EK+PKES +S + +E+ + + + H
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLV-EKQPKESTISIPSIYLELKVKLENEYALHRS 448
Query: 80 MV 81
+V
Sbjct: 449 IV 450
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 36.2 bits (84), Expect = 0.001
Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 1/82 (1%)
Query: 17 MKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTH 76
++++ LQ ++ +E L E E L E + M ++ T+
Sbjct: 926 LENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKL-RSDVERLRMSEEEAKNATN 984
Query: 77 HIFMVATENKQLWTKLSMLTEE 98
+ + E +L +L E
Sbjct: 985 RVLSLQEEIAKLRKELHQTQTE 1006
Score = 33.9 bits (78), Expect = 0.006
Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 6/95 (6%)
Query: 10 LQIALQTMKDRCQLLQLRLSNLEEE------NLKLRIDKKKSETNEKEPKESLVSKLNEE 63
LQ + + L +++NLE L+ +++ + E + + V L EE
Sbjct: 933 LQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEE 992
Query: 64 IEMLSQQKTQLTHHIFMVATENKQLWTKLSMLTEE 98
I L ++ Q + + + L E
Sbjct: 993 IAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSE 1027
Score = 28.5 bits (64), Expect = 0.39
Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 1/89 (1%)
Query: 10 LQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQ 69
+Q ++ R + + + + R+ K+ K + V + + L
Sbjct: 870 IQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKI-EARSVERYKKLHIGLEN 928
Query: 70 QKTQLTHHIFMVATENKQLWTKLSMLTEE 98
+ QL I E K L K++ L
Sbjct: 929 KIMQLQRKIDEQNKEYKSLLEKMNNLEIT 957
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 32.9 bits (75), Expect = 0.014
Identities = 18/103 (17%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
Query: 9 ALQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLS 68
L Q +++ ++ R+ EE + +L+ +KKK + + +E L + + L
Sbjct: 917 RLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLE-EEEAARQKLQ 975
Query: 69 QQKTQLTHHIFMVATENKQLWTKLSMLTEETNVPEQSINLVKD 111
+K I + + + + + LT+E + E+ ++ +
Sbjct: 976 LEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTT 1018
Score = 31.7 bits (72), Expect = 0.032
Identities = 18/95 (18%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 6 SNCALQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIE 65
+ LQ + M+ + L+ +L E KL+++K + + K+ ++I
Sbjct: 942 RSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVT--------ADGKIKKMEDDIL 993
Query: 66 MLSQQKTQLTHHIFMVATENKQLWTKLSMLTEETN 100
++ Q +LT ++ L T L+ E+
Sbjct: 994 IMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAK 1028
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A
{Drosophila melanogaster} PDB: 2y5w_A*
Length = 365
Score = 29.1 bits (66), Expect = 0.25
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 42 KKKSETNEKEPKESLVSKLNEEIEMLSQQKTQ 73
K NE+ E + +E E ++ K +
Sbjct: 334 KNVVCVNEELTAEEWKRRYEKEKEKNARLKGK 365
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 508
Score = 28.3 bits (63), Expect = 0.56
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 18 KDRCQLLQLRLSNLEEENLKLRID-KKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTH 76
+ + +L +R E+ K R + +K+ E K VSK + +S+Q+T+L+
Sbjct: 135 EVQRRLQLVRGGQAEKLGEKERSELRKRKLLAEVTLKTYWVSKGSAFSTSISKQETELSP 194
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.4 bits (60), Expect = 0.90
Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 33 EENLKLRIDKKKSETNEKEPKESLVSKLNEEI-EMLSQQKTQLTHHIFMVATENKQL 88
EE + R+ + + K ++ K +++ E +Q Q+ + +K
Sbjct: 92 EEQ-RKRLQEL--DAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAF 145
>1so2_A CGMP-inhibited 3',5'-cyclic phosphodiesterase B; PDE3B
phosphodiesterase, hydrolase; HET: HG9 666; 2.40A {Homo
sapiens} SCOP: a.211.1.2 PDB: 1soj_A*
Length = 420
Score = 27.3 bits (60), Expect = 1.1
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 22 QLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTHHIFMV 81
Q L+ N E ++ +E E E + + + QL HH+
Sbjct: 359 QWLEAEEDNDTESGDDEDGEELDTEDEEMENNLNPKPPRRKS---RRRIFCQLMHHL--- 412
Query: 82 ATENKQLW 89
TEN ++W
Sbjct: 413 -TENHKIW 419
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A
{Rattus norvegicus} SCOP: c.37.1.9
Length = 117
Score = 26.1 bits (58), Expect = 1.6
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 42 KKKSETNEKEPKESLVSKLNEEIEMLSQQKTQLTH 76
K N + E K +E E K+ + H
Sbjct: 73 KNTVSVNLELTAEEWKKKYEKEKEKNKALKSVIQH 107
>2jro_A Uncharacterized protein; solution structure, structural genomics,
PSI-2, protein initiative, northeast structural
genomics consortium; NMR {Shewanella oneidensis}
Length = 78
Score = 24.8 bits (54), Expect = 3.8
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 55 SLVSKLNEEIEMLSQQ-KTQLTHH 77
+ +LNE IE + Q KT L HH
Sbjct: 51 QAILELNELIEAQNHQTKTALEHH 74
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.308 0.122 0.317
Gapped
Lambda K H
0.267 0.0598 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,329,923
Number of extensions: 60419
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 66
Length of query: 111
Length of database: 6,701,793
Length adjustment: 75
Effective length of query: 36
Effective length of database: 4,607,718
Effective search space: 165877848
Effective search space used: 165877848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (23.7 bits)