RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy524
         (111 letters)



>d2qfaa1 g.52.1.1 (A:5-141) Anti-apoptotic protein survivin {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 137

 Score = 25.4 bits (55), Expect = 1.4
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 6   SNCALQIALQTMKDRCQLLQLRLSNLEEENLKLRIDKKKSETNEKEPKESLVSKLNEEIE 65
           S CA    L   K   +L       L+ E  K +I K+ +   ++   E    K+   IE
Sbjct: 78  SGCAF---LSVKKQFEELTLGEFLKLDRERAKNKIAKETNNKKKEF--EETAKKVRRAIE 132

Query: 66  MLS 68
            L+
Sbjct: 133 QLA 135


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.308    0.122    0.317 

Gapped
Lambda     K      H
   0.267   0.0556    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 316,501
Number of extensions: 11207
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 15
Length of query: 111
Length of database: 2,407,596
Length adjustment: 70
Effective length of query: 41
Effective length of database: 1,446,496
Effective search space: 59306336
Effective search space used: 59306336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.3 bits)