BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5240
(97 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CG9|X Chain X, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
pdb|2CG9|Y Chain Y, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
Length = 134
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 14/101 (13%)
Query: 5 PPVIWAQR-------KDKILITFCVENCNNPKIDIEPDEIKFDAVS------ADKKHYKL 51
P V WAQR ++ +LIT + +C+ P++ I+P I+ A S + HY+L
Sbjct: 7 PQVAWAQRSSTTDPERNYVLITVSIADCDAPELTIKPSYIELKAQSKPHVGDENVHHYQL 66
Query: 52 DIKLFKSINAEKSI-KTNKDRHIELVLKKLEEDVVFWPHLT 91
I L+K I EK++ K +H L L K + + +WP LT
Sbjct: 67 HIDLYKEIIPEKTMHKVANGQHYFLKLYKKDLESEYWPRLT 107
>pdb|1EJF|A Chain A, Crystal Structure Of The Human Co-Chaperone P23
pdb|1EJF|B Chain B, Crystal Structure Of The Human Co-Chaperone P23
Length = 125
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 3 QIPPVIWAQRKDKILITFCVENCNNPKIDIEPDEIKFDAVSADKKHYKLD-IKLFKSINA 61
Q W R+D + I FCVE+ + ++ E ++ F + L+ I LF I+
Sbjct: 2 QPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDP 61
Query: 62 EKSIKTNKDRHIELVLKKLEEDVVFWPHLT 91
S DR I L+K E WP LT
Sbjct: 62 NDSKHKRTDRSILCCLRKGESGQS-WPRLT 90
>pdb|2KMW|A Chain A, Solution Structure Of At3g03773.1 Protein From
Arabidopsis Thaliana
Length = 150
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 2 TQIPPVIWAQRKDKILITFCVENCNNPKIDIEPDEI-KFDAVSADKKHYKLDIKLFKSIN 60
++ P V+WAQR DK+ +T + + + + EP + F A+ A + ++ ++L+ I
Sbjct: 2 SRNPEVLWAQRSDKVYLTVALPDAKDISVKCEPQGLFSFSALGAQGERFEFSLELYGKIM 61
Query: 61 AE 62
E
Sbjct: 62 TE 63
>pdb|2J5W|A Chain A, Ceruloplasmin Revisited: Structural And Functional Roles
Of Various Metal Cation Binding Sites
Length = 1065
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 6 PVIWAQRKDKILITFCVENCNNPKIDIEPDEIKFD 40
PVIWA+ D I +TF N + IEP ++F+
Sbjct: 451 PVIWAEVGDTIRVTF--HNKGAYPLSIEPIGVRFN 483
>pdb|1KCW|A Chain A, X-Ray Crystal Structure Of Human Ceruloplasmin At 3.0
Angstroms
Length = 1046
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 6 PVIWAQRKDKILITFCVENCNNPKIDIEPDEIKFD 40
PVIWA+ D I +TF N + IEP ++F+
Sbjct: 432 PVIWAEVGDTIRVTF--HNKGAYPLSIEPIGVRFN 464
>pdb|2UXQ|A Chain A, Isocitrate Dehydrogenase From The Psychrophilic
Bacterium Desulfotalea Psychrophila: Biochemical
Properties And Crystal Structure Analysis
pdb|2UXQ|B Chain B, Isocitrate Dehydrogenase From The Psychrophilic
Bacterium Desulfotalea Psychrophila: Biochemical
Properties And Crystal Structure Analysis
pdb|2UXQ|C Chain C, Isocitrate Dehydrogenase From The Psychrophilic
Bacterium Desulfotalea Psychrophila: Biochemical
Properties And Crystal Structure Analysis
pdb|2UXQ|D Chain D, Isocitrate Dehydrogenase From The Psychrophilic
Bacterium Desulfotalea Psychrophila: Biochemical
Properties And Crystal Structure Analysis
pdb|2UXR|A Chain A, Complex With Isocitrate And The Protein Isocitrate
Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila
pdb|2UXR|B Chain B, Complex With Isocitrate And The Protein Isocitrate
Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila
pdb|4AOV|A Chain A, Dpidh-Nadp. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
Length = 402
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 13/78 (16%)
Query: 7 VIWAQRKDKILITFCVENCNNPKIDIEP-----DEIKFDAVSADKKHYKLDIKLFKSINA 61
V+W KDK+L+ F + IE D+I DA A KK Y + +K NA
Sbjct: 20 VLWPLIKDKLLLPFIDLQTEYYDLGIEERDRTNDQITIDAAEAIKK-YGVGVK-----NA 73
Query: 62 EKSIKTNKDRHIELVLKK 79
+I N+DR E LK+
Sbjct: 74 --TITPNQDRVEEYGLKE 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,817,984
Number of Sequences: 62578
Number of extensions: 98499
Number of successful extensions: 247
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 236
Number of HSP's gapped (non-prelim): 13
length of query: 97
length of database: 14,973,337
effective HSP length: 63
effective length of query: 34
effective length of database: 11,030,923
effective search space: 375051382
effective search space used: 375051382
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)