RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5240
(97 letters)
>gnl|CDD|107222 cd06465, p23_hB-ind1_like, p23_like domain found in human (h)
butyrate-induced transcript 1 (B-ind1) and similar
proteins. hB-ind1 participates in signaling by the
small GTPase Rac1. It binds to Rac1 and enhances
different Rac1 effects including activation of nuclear
factor (NF) kappaB and activation of c-Jun N-terminal
kinase (JNK). hB-ind1 also plays a part in the RNA
replication and particle production of Hepatitis C
virus (HCV) through its interaction with heat shock
protein Hsp90, HCV nonstructural protein 5A (NS5A), and
the immunophilin FKBP8. hB-ind1 is upregulated in the
outer layer of Chinese hamster V79 cells grown as
multicell spheroids, versus in the same cells grown as
monolayers. This group includes the Saccharomyces
cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has
been shown to be is required for telomere length
maintenance, and may modulate telomerase DNA-binding
activity.
Length = 108
Score = 94.6 bits (236), Expect = 6e-27
Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 5 PPVIWAQRKDKILITFCVENCNNPKIDIEPDEIKFDAVS-ADKKHYKLDIKLFKSINAEK 63
PPV+WAQR D + +T + + +PKI +EP + F A K Y+ D++ +K I+ E+
Sbjct: 1 PPVLWAQRSDVVYLTIELPDAKDPKIKLEPTSLSFKAKGGGGGKKYEFDLEFYKEIDPEE 60
Query: 64 SIKTNKDRHIELVLKKLEEDVVFWPHLTST 93
S R IE VL+K +E +WP LT
Sbjct: 61 SKYKVTGRQIEFVLRK-KEAGEYWPRLTKE 89
>gnl|CDD|107220 cd06463, p23_like, Proteins containing this p23_like domain
include p23 and its Saccharomyces cerevisiae (Sc)
homolog Sba1. Both are co-chaperones for the heat shock
protein (Hsp) 90. p23 binds Hsp90 and participates in
the folding of a number of Hsp90 clients, including the
progesterone receptor. p23 also has a passive
chaperoning activity and in addition may participate in
prostaglandin synthesis. Both p23 and Sba1p can
regulate telomerase activity. This group includes
domains similar to the C-terminal CHORD-SGT1 (CS)
domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1
interacts with multiple protein complexes and has the
features of a co-chaperone. Human (h) Sgt1 interacts
with both Hsp70 and Hsp90, and has been shown to bind
Hsp90 through its CS domain. Saccharomyces cerevisiae
(Sc) Sgt1 is a subunit of both core kinetochore and SCF
(Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is
required for pathogen resistance in plants. This group
also includes the p23_like domains of human
butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
distribution) C, Melusin, and NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR). hB-ind1 plays a role in the
signaling pathway mediated by the small GTPase Rac1,
NUDC is needed for nuclear movement, Melusin interacts
with two splice variants of beta1 integrin, and NCB5OR
plays a part in maintaining viable pancreatic beta
cells.
Length = 84
Score = 68.9 bits (169), Expect = 5e-17
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 9 WAQRKDKILITFCVENC--NNPKIDIEPDEIKFDAVSADKKHYKLDIKLFKSINAEKSIK 66
W Q D++ IT +++ + K++ P + K Y L+ +LF I+ E+S
Sbjct: 1 WYQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFGPIDPEESKW 60
Query: 67 TNKDRHIELVLKKLEEDVVFWPHLT 91
T +DR IE+ LKK E +WP L
Sbjct: 61 TVEDRKIEITLKKKEPG-EWWPRLE 84
>gnl|CDD|107218 cd00237, p23, p23 binds heat shock protein (Hsp)90 and
participates in the folding of a number of Hsp90
clients, including the progesterone receptor. p23 also
has a passive chaperoning activity and in addition may
participate in prostaglandin synthesis.
Length = 106
Score = 54.0 bits (130), Expect = 6e-11
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 9 WAQRKDKILITFCVENCNNPKIDIEPDEIKFDAVSADKKHYKLDIKLFKSINAEKSIKTN 68
W R+D + I FCVE+ + K+D E ++ F ++ D +I+L+ ++ S
Sbjct: 6 WYDRRDYVFIEFCVEDSKDVKVDFEKSKLTFSCLNGDNVKIYNEIELYDRVDPNDSKHKR 65
Query: 69 KDRHIELVLKKLEEDVVFWPHLT 91
DR I L+K +E V WP LT
Sbjct: 66 TDRSILCCLRKGKEGVA-WPRLT 87
>gnl|CDD|218355 pfam04969, CS, CS domain. The CS and CHORD (pfam04968) are fused
into a single polypeptide chain in metazoans but are
found in separate proteins in plants; this is thought
to be indicative of an interaction between CS and
CHORD. It has been suggested that the CS domain is a
binding module for HSP90, implying that CS
domain-containing proteins are involved in recruiting
heat shock proteins to multiprotein assemblies.
Length = 78
Score = 52.6 bits (127), Expect = 9e-11
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 9 WAQRKDKILITFCVENCNNPK---IDIEPDEIKFDAVSADKKHYKLDIKLFKSINAEKSI 65
W Q D++ IT ++ K ++I+P +K K Y LD +LF I+ E+S
Sbjct: 5 WYQTLDEVTITIPLKGVTKKKDVKVEIKPRSLKVSIKGPGGKEYLLDGELFGPIDPEESS 64
Query: 66 KTNKDRHIELVLKK 79
+D +E+ LKK
Sbjct: 65 WKIEDTKVEITLKK 78
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the
alpha-crystallin domain (ACD) of alpha-crystallin-type
small heat shock proteins (sHsps) and a similar domain
found in p23-like proteins. sHsps are small stress
induced proteins with monomeric masses between 12 -43
kDa, whose common feature is this ACD. sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps. p23 is a cochaperone of the Hsp90 chaperoning
pathway. It binds Hsp90 and participates in the folding
of a number of Hsp90 clients including the progesterone
receptor. p23 also has a passive chaperoning activity.
p23 in addition may act as the cytosolic prostaglandin
E2 synthase. Included in this family is the p23-like
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1) and the p23-like domains of
human butyrate-induced transcript 1 (hB-ind1), NUD
(nuclear distribution) C, Melusin, and NAD(P)H
cytochrome b5 (NCB5) oxidoreductase (OR).
Length = 80
Score = 39.1 bits (92), Expect = 1e-05
Identities = 13/80 (16%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 9 WAQRKDKILITFCVENC--NNPKIDIEPDEIKFDAVSADK-------KHYKLDIKLFKSI 59
W Q D++++T + + K+++E + + ++ ++ +L + +
Sbjct: 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDV 60
Query: 60 NAEKSIKTNKDRHIELVLKK 79
+ EKS + ++ +E+ L K
Sbjct: 61 DPEKSKASLENGVLEITLPK 80
>gnl|CDD|107223 cd06466, p23_CS_SGT1_like, p23_like domain similar to the
C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor
of G2 allele of Skp1). Sgt1 interacts with multiple
protein complexes and has the features of a
cochaperone. Human (h) Sgt1 interacts with both Hsp70
and Hsp90, and has been shown to bind Hsp90 through its
CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a
subunit of both core kinetochore and SCF
(Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is
required for pathogen resistance in plants. ScSgt1 is
needed for the G1/S and G2/M cell-cycle transitions,
and for assembly of the core kinetochore complex (CBF3)
via activation of Ctf13, the F-box protein. Binding of
Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the
binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some
proteins in this group have an SGT1-specific (SGS)
domain at the extreme C-terminus. The ScSgt1-SGS domain
binds adenylate cyclase. The hSgt1-SGS domain
interacts with some S100 family proteins, and studies
suggest that the interaction of hSgt1 with Hsp90 and
Hsp70 may be regulated by S100A6 in a Ca2+ dependent
fashion. This group also includes the p23_like domains
of Melusin and NAD(P)H cytochrome b5 (NCB5)
oxidoreductase (OR). Melusin is a vertebrate protein
which interacts with two splice variants of beta1
integrin, and NCB5OR plays a part in maintaining viable
pancreatic beta cells.
Length = 84
Score = 38.3 bits (90), Expect = 4e-05
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 9 WAQRKDKILITFCVENCNNP--KIDIEPDEIKFDAVSADKKHYKLDIKLFKSINAEKSIK 66
W Q + +T +N + K++ + + Y+L++ LF I+ E+S
Sbjct: 2 WYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILPGGSEYQLELDLFGPIDPEQSKV 61
Query: 67 TNKDRHIELVLKKLEEDVVFWPHLT 91
+ +E+ LKK E WP L
Sbjct: 62 SVLPTKVEITLKKAEP--GSWPSLE 84
>gnl|CDD|222251 pfam13595, DUF4138, Domain of unknown function (DUF4138). Based on
Bacteroides thetaiotaomicron gene BT_4780, a putative
uncharacterized protein. As seen in gene expression
experiments
(http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE22
31), it appears to be upregulated in the presence of
host or vs when in culture.
Length = 246
Score = 29.1 bits (66), Expect = 0.24
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 10/74 (13%)
Query: 13 KDKILITFCVENCNNPKIDIEPDEIKFDAVSADKKHYKL------DIKLFKSINAEKSIK 66
D + ++N +N DI D I+F V DKK K ++ + +N IK
Sbjct: 141 GDYLYFDLSLKNNSNIPYDI--DFIRFKIV--DKKIAKRTASQEIELTPLRVLNPLTVIK 196
Query: 67 TNKDRHIELVLKKL 80
K VL K
Sbjct: 197 GKKRYRNVFVLPKF 210
>gnl|CDD|107225 cd06468, p23_CacyBP, p23_like domain found in proteins similar to
Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting
protein (SIP). CacyBP/SIP interacts with S100A6
(calcyclin), with some other members of the S100
family, with tubulin, and with Siah-1 and Skp-1. The
latter two are components of the ubiquitin ligase that
regulates beta-catenin degradation. The beta-catenin
gene is an oncogene participating in tumorigenesis in
many different cancers. Overexpression of CacyBP/SIP,
in part through its effect on the expression of
beta-catenin, inhibits the proliferation,
tumorigenicity, and invasion of gastric cancer cells.
CacyBP/SIP is abundant in neurons and neuroblastoma
NB2a cells. An extensive re-organization of
microtubules accompanies the differentiation of NB2a
cells. CacyBP/SIP may contribute to NB2a cell
differentiation through binding to and increasing the
oligomerization of tubulin. CacyBP/SIP is also
implicated in differentiation of erythroid cells, rat
neonatal cardiomyocytes, in mouse endometrial events,
and in thymocyte development.
Length = 92
Score = 28.0 bits (63), Expect = 0.35
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Query: 22 VENCNNPKIDIEPDEIKFD--AVSADKKHYKLDIK-LFKSINAEKSIKTNKDRHIELVLK 78
V I +E E F+ + K+Y+ I L K I+ EKS K I + L
Sbjct: 22 VHQLPKENIQVEFTERSFELKVHDLNGKNYRFTINRLLKKIDPEKSSFKVKTDRIVITLA 81
Query: 79 KLEEDVVFWPHLT 91
K +E W LT
Sbjct: 82 KKKEKK--WESLT 92
>gnl|CDD|107226 cd06469, p23_DYX1C1_like, p23_like domain found in proteins
similar to dyslexia susceptibility 1 (DYX1) candidate 1
(C1) protein, DYX1C1. The human gene encoding this
protein is a positional candidate gene for
developmental dyslexia (DD), it is located on 15q21.3
by the DYX1 DD susceptibility locus (15q15-21).
Independent association studies have reported
conflicting results. However, association of short-term
memory, which plays a role in DD, with a variant within
the DYX1C1 gene has been reported. Most proteins
belonging to this group contain a C-terminal
tetratricopeptide repeat (TPR) protein binding region.
Length = 78
Score = 27.2 bits (61), Expect = 0.56
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 9/84 (10%)
Query: 9 WAQRKDKILITFCVENCNNPKIDI--EPDEIKFDAVSADKKHYKLDIKLFKSINAEKSIK 66
W+Q + + I+ ++ K+DI +K + Y ++ L I+ EKS
Sbjct: 1 WSQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNF-----PPYLFELDLAAPIDDEKSSA 55
Query: 67 TNKDRHIELVLKKLEEDVVFWPHL 90
+ + L K E + W L
Sbjct: 56 KIGNGVLVFTLVKKEPGI--WEAL 77
>gnl|CDD|107238 cd06488, p23_melusin_like, p23_like domain similar to the
C-terminal (tail) domain of vertebrate Melusin and
related proteins. Melusin's tail domain interacts with
the cytoplasmic domain of beta1-A and beta1-D isoforms
of beta1 integrin, it does not bind other integrin beta
subunits. Melusin is a muscle-specific protein
expressed in skeletal and cardiac muscles but not in
smooth muscle or other tissues. It is needed for heart
hypertrophy following mechanical overload. The
integrin-binding portion of this domain appears to be
sequestered in the full length melusin protein, Ca2+
may modulate the protein's conformation exposing this
binding site. This group includes Chordc1, also known
as Chp-1, which is conserved from vertebrates to
humans. Mammalian Chordc1 interacts with the heat
shock protein (HSP) Hsp90 and is implicated in
circadian and/or homeostatic mechanisms in the brain.
The N-terminal portions of proteins belonging to this
group contain two cysteine and histidine rich domain
(CHORD) domains.
Length = 87
Score = 26.5 bits (59), Expect = 1.4
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 9 WAQRKDKILITFCVENCNNPKIDIE--PDEIKFDAVSADKKHYKLDIKLFKSINAEKSIK 66
W Q ++++ +N N +E + V K ++LDI+L+ I+ EKS
Sbjct: 5 WHQTGSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEGNKEFQLDIELWGVIDVEKSSV 64
Query: 67 TNKDRHIELVLKKLE 81
+E+ L+K E
Sbjct: 65 NMLPTKVEIKLRKAE 79
>gnl|CDD|237078 PRK12366, PRK12366, replication factor A; Reviewed.
Length = 637
Score = 26.9 bits (60), Expect = 1.6
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 18/91 (19%)
Query: 12 RKDKILITFCVENCNNPKI------------DIEPDEIKFDAVSADKKHYKLDIKLFKSI 59
RK KI++ C NC ++EP+E+ + D ++ + +
Sbjct: 526 RKQKIILYLC-PNCRKRVEEVDGEYICEFCGEVEPNELLMLNFTLDDGTGTINCRFYGK- 583
Query: 60 NAEKSIKTNKDRHIELVLKKLE----EDVVF 86
N EK + +K+ EL L+ LE E+VVF
Sbjct: 584 NVEKLLGMSKEELKELNLEALEDLLGEEVVF 614
>gnl|CDD|234761 PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase;
Validated.
Length = 343
Score = 26.6 bits (60), Expect = 1.8
Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 24/79 (30%)
Query: 32 IEPDEIKFDAVS---------ADKKHYKLDIKLFKSINAEKSI---KTNKDRH---IELV 76
I+PD I DA S ++ + +++ K RH IE
Sbjct: 168 IDPDSIIIDAKSGVSGAGRKASEGTLF---------SEVNENLRPYKVGGHRHTPEIEQE 218
Query: 77 LKKLEEDVVFWPHLTSTTR 95
L L +V F PHL TR
Sbjct: 219 LSALAGEVSFTPHLVPMTR 237
>gnl|CDD|206431 pfam14263, DUF4354, Domain of unknown function (DUF4354).
Several members of this family are annotated as being
ATP/GTP-binding site motif A (P-loop) proteins, but
this could not be confirmed. The one PDB:3NRF structure
solved for this family exhibits an immunoglobin-like
beta-sandwich fold. Crystal packing suggests that a
tetramer is a significant oligomerisation state, and a
disulfide bridge is formed between Cys 125 at the
C-terminal end of the monomer, and Cys 69.
Length = 124
Score = 25.8 bits (57), Expect = 2.8
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 19 TFCVENCNNPKIDIEPDEIKFDAVSADKKHYKLD 52
TF V N K DI+ +I F A S D K +KLD
Sbjct: 50 TFDVVVANLSKKDIDLSKICFKAFSPDGKEFKLD 83
>gnl|CDD|218562 pfam05342, Peptidase_M26_N, M26 IgA1-specific
Metallo-endopeptidase N-terminal region. These
peptidases, which cleave mammalian IgA, are found in
Gram-positive bacteria. Often found associated with
pfam00746, they may be attached to the cell wall.
Length = 252
Score = 25.7 bits (57), Expect = 4.0
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 47 KHYKLDIKLFKSINAEKSIKTNKDRHIELVLKKLE 81
K Y L + +T +++ ++L LKK+E
Sbjct: 7 KEYTLSTTMVYDRGEGSETETLEEKPVQLDLKKVE 41
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 25.8 bits (57), Expect = 4.3
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 46 KKHYKLDIKLFKSIN-AEKSIKTNKDRHI 73
KK Y+ D+ +KSIN +K + NK++ I
Sbjct: 1316 KKDYRYDLLSYKSINYEDKKFQVNKNQEI 1344
>gnl|CDD|234837 PRK00783, PRK00783, DNA-directed RNA polymerase subunit D;
Provisional.
Length = 263
Score = 24.8 bits (55), Expect = 7.1
Identities = 7/20 (35%), Positives = 8/20 (40%)
Query: 20 FCVENCNNPKIDIEPDEIKF 39
C C I + DE KF
Sbjct: 206 LCERACPGKAIRVSDDENKF 225
>gnl|CDD|217352 pfam03071, GNT-I, GNT-I family. Alpha-1,3-mannosyl-glycoprotein
beta-1,2-N-acetylglucosaminyltransferase (GNT-I,
GLCNAC-T I) EC:2.4.1.101 transfers
N-acetyl-D-glucosamine from UDP to high-mannose
glycoprotein N-oligosaccharide. This is an essential
step in the synthesis of complex or hybrid-type N-linked
oligosaccharides. The enzyme is an integral membrane
protein localised to the Golgi apparatus, and is
probably distributed in all tissues. The catalytic
domain is located at the C-terminus.
Length = 434
Score = 24.8 bits (54), Expect = 9.5
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 29 KIDIEPDEIKFDAVSADKKHYKLDI-KLFKSINAEKSIKTNKDRHI 73
I I P KF A +HYK + ++F N I T D I
Sbjct: 159 PIAIPPGHRKFTAYYKIARHYKWALNQVFYKHNFSSVIITEDDLEI 204
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.412
Gapped
Lambda K H
0.267 0.0685 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,868,591
Number of extensions: 397084
Number of successful extensions: 405
Number of sequences better than 10.0: 1
Number of HSP's gapped: 398
Number of HSP's successfully gapped: 30
Length of query: 97
Length of database: 10,937,602
Length adjustment: 64
Effective length of query: 33
Effective length of database: 8,098,946
Effective search space: 267265218
Effective search space used: 267265218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.3 bits)