RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5240
(97 letters)
>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone,
beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2
Length = 125
Score = 81.1 bits (200), Expect = 1e-21
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 3 QIPPVIWAQRKDKILITFCVENCNNPKIDIEPDEIKFDAVSA-DKKHYKLDIKLFKSINA 61
Q W R+D + I FCVE+ + ++ E ++ F + D + +I LF I+
Sbjct: 2 QPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDP 61
Query: 62 EKSIKTNKDRHIELVLKKLEEDVVFWPHLTST 93
S DR I L+K E WP LT
Sbjct: 62 NDSKHKRTDRSILCCLRKGESG-QSWPRLTKE 92
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative,
center for eukaryotic structural genomics, CESG,
structural genomics; NMR {Arabidopsis thaliana}
Length = 150
Score = 76.9 bits (189), Expect = 1e-19
Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 2 TQIPPVIWAQRKDKILITFCVENCNNPKIDIEPDEIKFDAVS-ADKKHYKLDIKLFKSIN 60
++ P V+WAQR DK+ +T + + + + EP + + A + ++ ++L+ I
Sbjct: 2 SRNPEVLWAQRSDKVYLTVALPDAKDISVKCEPQGLFSFSALGAQGERFEFSLELYGKIM 61
Query: 61 AEKSIKTNKDRHIELVLKKLEEDVVFWPHLTST 93
E R+I ++K E +W L +
Sbjct: 62 TEYRKNVG-LRNIIFSIQKEERS--WWTRLLKS 91
>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock
protein, ATP-binding, heat shock, nucleotide-binding,
acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Length = 134
Score = 74.2 bits (182), Expect = 9e-19
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 14/103 (13%)
Query: 5 PPVIWAQR-------KDKILITFCVENCNNPKIDIEPDEIKFDAVSA------DKKHYKL 51
P V WAQR ++ +LIT + +C+ P++ I+P I+ A S + HY+L
Sbjct: 7 PQVAWAQRSSTTDPERNYVLITVSIADCDAPELTIKPSYIELKAQSKPHVGDENVHHYQL 66
Query: 52 DIKLFKSINAEKSI-KTNKDRHIELVLKKLEEDVVFWPHLTST 93
I L+K I EK++ K +H L L K + + +WP LT
Sbjct: 67 HIDLYKEIIPEKTMHKVANGQHYFLKLYKKDLESEYWPRLTKE 109
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta
strands, similar to P23, lacking LAST beta strand SEEN
in P23, protein degradation; NMR {Homo sapiens} SCOP:
b.15.1.3
Length = 114
Score = 60.3 bits (146), Expect = 1e-13
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Query: 9 WAQRKDKILITFCVENCN--NPKIDIEPDEIKFDAVSADKKHYKLDIKLFKSINAEKSIK 66
W Q + +++IT ++N + ++ E+ + Y L ++L I E+S
Sbjct: 14 WYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTF 73
Query: 67 TNKDRHIELVLKKLEEDVVFWPHLTST 93
IE+ LKK E V W L
Sbjct: 74 KVLSTKIEIKLKKPEA--VRWEKLEGQ 98
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90;
chaperone-protein binding complex, stress response;
HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
Length = 92
Score = 51.4 bits (123), Expect = 2e-10
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 4/84 (4%)
Query: 9 WAQRKDKILITFCVENCN--NPKIDIEPDEIKFDAVSADKKHYKLDIKLFKSINAEKSIK 66
+ Q+ +++++T + N ID + + Y L +LF I +K
Sbjct: 7 YYQKPEEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIPDKCKY 66
Query: 67 TNKDRHIELVLKKLEEDVVFWPHL 90
IE+ L K + + W L
Sbjct: 67 EVLSTKIEICLAKADI--ITWASL 88
>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 127
Score = 39.3 bits (91), Expect = 2e-05
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 7/91 (7%)
Query: 9 WAQRKDKILITFCVENCNNP-----KIDIEPDEIKFDAVSADKKHYKLDI-KLFKSINAE 62
W Q + I + + ++ + + K Y + + L K I+ E
Sbjct: 25 WDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPISVE 84
Query: 63 KSIKTNKDRHIELVLKKLEEDVVFWPHLTST 93
S K K + ++ +K E+ W +LT
Sbjct: 85 GSSKKVKTDTVLILCRKKVENTR-WDYLTQV 114
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.15.1.3
Length = 134
Score = 32.7 bits (74), Expect = 0.006
Identities = 11/83 (13%), Positives = 27/83 (32%), Gaps = 2/83 (2%)
Query: 13 KDKILITFCVENCNNPKIDIEPDEIKFDAVSADKKHYKLDIKLFKSINAEKSIKTNKDRH 72
+D + F ++ + + ++ ++ +KL I E+
Sbjct: 43 RDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVKLRNLIEPEQCTFCFTASR 102
Query: 73 IELVLKKLEEDVVFWPHLTSTTR 95
I++ L+K W L +
Sbjct: 103 IDICLRK--RQSQRWGGLEAPAA 123
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2,
structure initiative; 1.66A {Encephalitozoon cuniculi}
Length = 131
Score = 31.7 bits (72), Expect = 0.014
Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 9/93 (9%)
Query: 1 MTQIPPVIWAQRKDKILITFCVENCNNPK---IDIEPDEIKFDAVSADKKHYKLDIKLFK 57
M W Q ++I I F V + I + +I ++ +D +L
Sbjct: 1 MPSEAKYTWDQELNEINIQFPVTGDADSSAIKIRMVGKKICV----KNQGEIVIDGELLH 56
Query: 58 SINAEKSIKTNKDRHIELVLKKLEEDVVFWPHL 90
++ +++ + K + +W L
Sbjct: 57 EVDVSSLWWVINGDVVDVNVTKKRNE--WWDSL 87
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein
cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B*
2cr0_A
Length = 121
Score = 26.5 bits (58), Expect = 1.1
Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 5 PPVIWAQRKD--KILITFCVENCNNPK---IDIEPDEIKFDAVSADKKHYKLDIKLFKSI 59
P W Q + + FCV K +DI+ ++ V + +D +L+ +
Sbjct: 17 PNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLR---VGLKGQPAIIDGELYNEV 73
Query: 60 NAEKSIKTNKDR-HIELVLKKLEEDVVFWPHL 90
E+S D + + L+K+ + + +W L
Sbjct: 74 KVEESSWLIADGAVVTVHLEKINK-MEWWSRL 104
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl
pyrophosphate isomerase, TIM-barrel; 2.04A
{Streptococcus mutans}
Length = 365
Score = 25.9 bits (57), Expect = 2.3
Identities = 11/52 (21%), Positives = 15/52 (28%), Gaps = 15/52 (28%)
Query: 61 AEKSIKTNKDRHIELVLKKLE-----EDVVFWPHL----------TSTTRFG 97
S+ KD HI+ L +D+ H ST G
Sbjct: 31 GRGSMTNRKDDHIKYALDYRSPYNSFDDIELIHHSLPDYDLAEIDLSTHFAG 82
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis,
dimethylallyl diphosphate, flavoprotein; 1.90A
{Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Length = 349
Score = 25.1 bits (55), Expect = 4.9
Identities = 8/45 (17%), Positives = 12/45 (26%), Gaps = 16/45 (35%)
Query: 69 KDRHIELVLKKLEE------DVVFWPHL----------TSTTRFG 97
K +HI L ++ D+ F ST
Sbjct: 7 KRQHINHALSIGQKRETGLDDITFVHVSLPDLALEQVDISTKIGE 51
>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon
degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO
reductase family; HET: MES MGD MD1 HEM; 1.88A
{Aromatoleum aromaticum}
Length = 976
Score = 24.7 bits (53), Expect = 8.0
Identities = 4/37 (10%), Positives = 15/37 (40%)
Query: 60 NAEKSIKTNKDRHIELVLKKLEEDVVFWPHLTSTTRF 96
N + ++ +++ KL+ ++S+ +
Sbjct: 609 NPMRRKRSGAKMFPDVLFPKLKMIFALETRMSSSAMY 645
>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; 1.80A {Thermotoga maritima}
SCOP: c.2.1.3 d.81.1.1
Length = 351
Score = 24.4 bits (54), Expect = 8.3
Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 27/82 (32%)
Query: 32 IEPDEIKFDAVS---------ADKKHYKLDIKLFKSINAEKSI---KTNKDRH---IELV 76
++P+ I DA S + +S+ K RH +E
Sbjct: 175 VDPETILVDAKSGVSGAGRKEKVDYLFS---------EVNESLRPYNVAKHRHVPEMEQE 225
Query: 77 LKKL---EEDVVFWPHLTSTTR 95
L K+ + +VVF PHL TR
Sbjct: 226 LGKISGKKVNVVFTPHLVPMTR 247
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.412
Gapped
Lambda K H
0.267 0.0840 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,475,592
Number of extensions: 74155
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 29
Length of query: 97
Length of database: 6,701,793
Length adjustment: 63
Effective length of query: 34
Effective length of database: 4,942,770
Effective search space: 168054180
Effective search space used: 168054180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.2 bits)