RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5240
         (97 letters)



>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 110

 Score = 65.4 bits (159), Expect = 4e-16
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 2/92 (2%)

Query: 3  QIPPVIWAQRKDKILITFCVENCNNPKIDIEPDEIKFDAVS-ADKKHYKLDIKLFKSINA 61
          Q     W  R+D + I FCVE+  +  ++ E  ++ F  +  +D   +  +I LF  I+ 
Sbjct: 2  QPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDP 61

Query: 62 EKSIKTNKDRHIELVLKKLEEDVVFWPHLTST 93
            S     DR I   L+K E     WP LT  
Sbjct: 62 NDSKHKRTDRSILCCLRKGESG-QSWPRLTKE 92


>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog,
          gst1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 92

 Score = 60.7 bits (147), Expect = 2e-14
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 4/86 (4%)

Query: 9  WAQRKDKILITFCVENCN--NPKIDIEPDEIKFDAVSADKKHYKLDIKLFKSINAEKSIK 66
          W Q + +++IT  ++N    +  ++    E+         + Y L ++L   I  E+S  
Sbjct: 7  WYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTF 66

Query: 67 TNKDRHIELVLKKLEEDVVFWPHLTS 92
                IE+ LKK E   V W  L  
Sbjct: 67 KVLSTKIEIKLKKPEA--VRWEKLEG 90


>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19,
           USP19 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 134

 Score = 46.5 bits (110), Expect = 2e-08
 Identities = 11/99 (11%), Positives = 29/99 (29%), Gaps = 16/99 (16%)

Query: 9   WAQRKDKILITFCVENCN--NPKIDIEPDEIK------------FDAVSADKKHYKLDIK 54
           + +  D +++   V+       ++     +                        ++  +K
Sbjct: 25  YEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVK 84

Query: 55  LFKSINAEKSIKTNKDRHIELVLKKLEEDVVFWPHLTST 93
           L   I  E+         I++ L+K +     W  L + 
Sbjct: 85  LRNLIEPEQCTFCFTASRIDICLRKRQS--QRWGGLEAP 121


>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 131

 Score = 27.6 bits (61), Expect = 0.15
 Identities = 14/90 (15%), Positives = 34/90 (37%), Gaps = 8/90 (8%)

Query: 9  WAQRKDKILITFCVENCNNPK-----IDIEPDEIKFDAVSADKKHYKLDIKLFKSINAEK 63
          W Q   ++ +          K     +DI+   ++   V    +   +D +L+  +  E+
Sbjct: 12 WTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLR---VGLKGQPPVVDGELYNEVKVEE 68

Query: 64 SIKTNKDRHIELVLKKLEEDVVFWPHLTST 93
          S    +D  +  V  +    + +W  L ++
Sbjct: 69 SSWLIEDGKVVTVHLEKINKMEWWNRLVTS 98


>d1uk5a_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-3
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 111

 Score = 23.3 bits (50), Expect = 4.4
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 11/63 (17%)

Query: 31  DIEPDEIKFDAVSADKKHYKLDIKLFKSINAEKSIKTNKD-----------RHIELVLKK 79
            +E     F+    DKK+  ++  L K + A  S+                R ++ +L+K
Sbjct: 41  GLEQAVDSFEGKKTDKKYLMIEEYLTKELLALDSVDPEGRADVRQARRDGVRKVQTILEK 100

Query: 80  LEE 82
           LE+
Sbjct: 101 LEQ 103


>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable
          domain, VL-kappa {Mouse (Mus musculus), cluster 2
          [TaxId: 10090]}
          Length = 111

 Score = 23.1 bits (49), Expect = 5.6
 Identities = 3/27 (11%), Positives = 9/27 (33%)

Query: 1  MTQIPPVIWAQRKDKILITFCVENCNN 27
          +TQ P  +      +  ++       +
Sbjct: 4  LTQSPASLAVSLGQRATMSCRAGESVD 30


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0449    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 376,735
Number of extensions: 15318
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 20
Length of query: 97
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 38
Effective length of database: 1,597,526
Effective search space: 60705988
Effective search space used: 60705988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.6 bits)