BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy5241
         (132 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3G07|A Chain A, Methyltransferase Domain Of Human Bicoid-Interacting
           Protein 3 Homolog (Drosophila)
 pdb|3G07|B Chain B, Methyltransferase Domain Of Human Bicoid-Interacting
           Protein 3 Homolog (Drosophila)
 pdb|3G07|C Chain C, Methyltransferase Domain Of Human Bicoid-Interacting
           Protein 3 Homolog (Drosophila)
 pdb|3G07|D Chain D, Methyltransferase Domain Of Human Bicoid-Interacting
           Protein 3 Homolog (Drosophila)
 pdb|3G07|E Chain E, Methyltransferase Domain Of Human Bicoid-Interacting
           Protein 3 Homolog (Drosophila)
 pdb|3G07|F Chain F, Methyltransferase Domain Of Human Bicoid-Interacting
           Protein 3 Homolog (Drosophila)
          Length = 292

 Score =  131 bits (329), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 83/114 (72%), Gaps = 1/114 (0%)

Query: 2   EQAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLT 61
           +  ++DV+LCLS+TKW HLNWGD G+KR F R+Y  LR GG+L+LEPQ + SY K++ LT
Sbjct: 174 QTPEYDVVLCLSLTKWVHLNWGDEGLKRXFRRIYRHLRPGGILVLEPQPWSSYGKRKTLT 233

Query: 62  DTIWRNFQAIEFFPHHFTEYLLS-EVGFTKCETLGSPLHPSKGFQRPIKMFTKG 114
           +TI++N+  I+  P  F+ YL S +VGF+  E + +P + SKGFQRP+ +F K 
Sbjct: 234 ETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVATPHNTSKGFQRPVYLFHKA 287


>pdb|1Y8C|A Chain A, Crystal Structure Of A S-Adenosylmethionine-Dependent
           Methyltransferase From Clostridium Acetobutylicum Atcc
           824
          Length = 246

 Score = 28.1 bits (61), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 17/80 (21%), Positives = 38/80 (47%), Gaps = 2/80 (2%)

Query: 5   QFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDTI 64
           +FD+I C   +  + ++  D  +K+ F  +   L+EGGV I +   +    +     D  
Sbjct: 101 KFDLITCCLDSTNYIIDSDD--LKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFN 158

Query: 65  WRNFQAIEFFPHHFTEYLLS 84
           + + +   ++ + F + L+S
Sbjct: 159 YDDDEVFYYWENQFEDDLVS 178


>pdb|4EMY|A Chain A, Crystal Structure Of Aminotransferase From Anaerococcus
           Prevotii Dsm 20548.
 pdb|4EMY|B Chain B, Crystal Structure Of Aminotransferase From Anaerococcus
           Prevotii Dsm 20548.
 pdb|4EMY|C Chain C, Crystal Structure Of Aminotransferase From Anaerococcus
           Prevotii Dsm 20548.
 pdb|4EMY|D Chain D, Crystal Structure Of Aminotransferase From Anaerococcus
           Prevotii Dsm 20548
          Length = 413

 Score = 26.9 bits (58), Expect = 3.6,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)

Query: 34  MYAQLREGGVLILEPQGFQSYKKKRKLTDTIWRNFQAIEFFPHHF 78
           +++ L EG  LI     +  Y   RK+ +   RNF+  EFF   F
Sbjct: 118 IFSYLDEGDPLICHDYYWAPY---RKICEEFGRNFKTFEFFTDDF 159


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.441 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,314,665
Number of Sequences: 62578
Number of extensions: 165872
Number of successful extensions: 348
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 346
Number of HSP's gapped (non-prelim): 4
length of query: 132
length of database: 14,973,337
effective HSP length: 88
effective length of query: 44
effective length of database: 9,466,473
effective search space: 416524812
effective search space used: 416524812
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)