BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5241
(132 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VNH1|BN3D2_DROME Probable RNA methyltransferase CG1239 OS=Drosophila melanogaster
GN=CG1239 PE=2 SV=2
Length = 300
Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/114 (61%), Positives = 88/114 (77%), Gaps = 1/114 (0%)
Query: 1 MEQAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKL 60
+E+ QFDVILCLSVTKW HLN+ DSG+K+ F RMY QLR GG LILEPQ F YK+++KL
Sbjct: 186 IERPQFDVILCLSVTKWIHLNFCDSGLKQAFRRMYLQLRPGGKLILEPQSFDGYKRRKKL 245
Query: 61 TDTIWRNFQAIEFFPHHFTEYLLS-EVGFTKCETLGSPLHPSKGFQRPIKMFTK 113
++ I N+ AI+F P HFTEYLLS EVGF + + +G P H GF+RPI++FTK
Sbjct: 246 SEQIRDNYNAIKFRPDHFTEYLLSPEVGFAEMKLMGIPEHCKVGFKRPIQIFTK 299
>sp|Q7K480|BN3D1_DROME Probable RNA methyltransferase bin3 OS=Drosophila melanogaster
GN=bin3 PE=1 SV=1
Length = 1367
Score = 146 bits (368), Expect = 5e-35, Method: Composition-based stats.
Identities = 68/114 (59%), Positives = 86/114 (75%), Gaps = 1/114 (0%)
Query: 2 EQAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLT 61
+ Q+D+ILCLSVTKW HLN+GD+G+K F RM+ QLR GG LILE Q + SYKKK+ LT
Sbjct: 1000 DTQQYDLILCLSVTKWIHLNFGDNGLKMAFKRMFNQLRPGGKLILEAQNWASYKKKKNLT 1059
Query: 62 DTIWRNFQAIEFFPHHFTEYLL-SEVGFTKCETLGSPLHPSKGFQRPIKMFTKG 114
I+ N++ IEFFP+ F EYLL SEVGF+ TLG P H +KGF RPI+++ KG
Sbjct: 1060 PEIYNNYKQIEFFPNKFHEYLLSSEVGFSHSYTLGVPRHMNKGFCRPIQLYAKG 1113
>sp|A3KQ55|MEPCE_DANRE 7SK snRNA methylphosphate capping enzyme OS=Danio rerio GN=mepce
PE=2 SV=2
Length = 645
Score = 137 bits (344), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 83/112 (74%)
Query: 2 EQAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLT 61
++ ++DVILCLSVTKW HLNWGD+G+KR F R+Y LR GG+ ILEPQ + SY K++KLT
Sbjct: 528 QREEYDVILCLSVTKWVHLNWGDAGLKRFFHRVYKHLRPGGLFILEPQPWSSYNKRKKLT 587
Query: 62 DTIWRNFQAIEFFPHHFTEYLLSEVGFTKCETLGSPLHPSKGFQRPIKMFTK 113
+ I +N+ +I P F+ +L +EVGF+ E +G+ + SKGFQRPI ++ K
Sbjct: 588 EAICKNYHSIRLKPDQFSSFLTTEVGFSSYELIGTSQNYSKGFQRPISLYHK 639
>sp|Q7L2J0|MEPCE_HUMAN 7SK snRNA methylphosphate capping enzyme OS=Homo sapiens GN=MEPCE
PE=1 SV=1
Length = 689
Score = 134 bits (338), Expect = 1e-31, Method: Composition-based stats.
Identities = 58/114 (50%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
Query: 2 EQAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLT 61
+ ++DV+LCLS+TKW HLNWGD G+KR+F R+Y LR GG+L+LEPQ + SY K++ LT
Sbjct: 571 QTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLT 630
Query: 62 DTIWRNFQAIEFFPHHFTEYLLS-EVGFTKCETLGSPLHPSKGFQRPIKMFTKG 114
+TI++N+ I+ P F+ YL S +VGF+ E + +P + SKGFQRP+ +F K
Sbjct: 631 ETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVATPHNTSKGFQRPVYLFHKA 684
>sp|Q8K3A9|MEPCE_MOUSE 7SK snRNA methylphosphate capping enzyme OS=Mus musculus GN=Mepce
PE=1 SV=2
Length = 666
Score = 134 bits (336), Expect = 2e-31, Method: Composition-based stats.
Identities = 57/114 (50%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
Query: 2 EQAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLT 61
++ ++DV+LC S+TKW HLNWGD G+KR+F R+Y LR GG+L+LEPQ + SY K++ LT
Sbjct: 548 QRPEYDVVLCFSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYCKRKSLT 607
Query: 62 DTIWRNFQAIEFFPHHFTEYLLS-EVGFTKCETLGSPLHPSKGFQRPIKMFTKG 114
+TI++N+ I+ P F+ YL S EVGF+ E + +P + S+GFQRP+ +F K
Sbjct: 608 ETIYKNYFRIQLKPEQFSSYLTSPEVGFSSYELVATPNNTSRGFQRPVYLFHKA 661
>sp|Q9U2R0|BIN3D_CAEEL Probable RNA methyltransferase Y17G7B.18 OS=Caenorhabditis elegans
GN=Y17G7B.18 PE=3 SV=1
Length = 378
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 76/113 (67%)
Query: 1 MEQAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKL 60
M Q +FDVIL LS+TKW HLNWGD G++R F R YAQL GG LI+EPQ F SYKK+ K+
Sbjct: 252 MIQPEFDVILALSITKWIHLNWGDDGMRRFFRRAYAQLHPGGRLIIEPQAFDSYKKRAKM 311
Query: 61 TDTIWRNFQAIEFFPHHFTEYLLSEVGFTKCETLGSPLHPSKGFQRPIKMFTK 113
++ + N+ IEF P F +L+ VGF E LG SKGF+RPI ++ K
Sbjct: 312 SEELKANYSKIEFKPEDFEMWLIETVGFESVEKLGVVGAKSKGFERPIDVYLK 364
>sp|Q6NPC9|BIN3D_ARATH Probable RNA methyltransferase At5g51130 OS=Arabidopsis thaliana
GN=At5g51130 PE=2 SV=1
Length = 318
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 73/114 (64%), Gaps = 1/114 (0%)
Query: 1 MEQAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKL 60
++ ++D ILCLSVTKW HLNWGD G+ +F +++ L+ GG+ ++EPQ ++SY+ R++
Sbjct: 205 LDDNRYDTILCLSVTKWVHLNWGDDGLITLFSKIWRLLQPGGIFVMEPQPWKSYENNRRV 264
Query: 61 TDTIWRNFQAIEFFPHHFTEYLLSEVGFTKCETLGSPLH-PSKGFQRPIKMFTK 113
++T N++ I P F E LL ++GF E L S L SKGF R I F K
Sbjct: 265 SETTAMNYRTIVLRPDRFQEILLDKIGFRTVEDLTSSLSGASKGFDRQILAFQK 318
>sp|Q9Y7L2|BIN3D_SCHPO Probable RNA methyltransferase C2A9.10 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC2A9.10 PE=3 SV=1
Length = 268
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 5 QFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDTI 64
+F +IL LSV+KW HLN D GI + F ++ + L GVLILEPQG+ SY K K
Sbjct: 146 KFKIILALSVSKWVHLNNHDEGIIKFFGKISSLLETNGVLILEPQGWDSYLKAAKKISVF 205
Query: 65 WRNFQAIEFFPHHFTEYLLSEVGFT 89
+ + ++ P F E+LL++ G
Sbjct: 206 NQTPENLKIQPDAF-EHLLNQAGLV 229
>sp|Q9VZD2|BN3D3_DROME Probable RNA methyltransferase CG11342 OS=Drosophila melanogaster
GN=CG11342 PE=3 SV=1
Length = 238
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 9/71 (12%)
Query: 5 QFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDTI 64
+FD I C S+T W HLN D G+ R F++ + L E +L++EPQ ++ Y+K +
Sbjct: 133 KFDAICCYSITMWIHLNHHDQGL-RFFLQKLSNLAE--LLVVEPQPWKCYQKAER----- 184
Query: 65 WRNFQAIEFFP 75
R +A E FP
Sbjct: 185 -RLKKAGEIFP 194
>sp|Q7T0L7|BN3D2_XENLA Pre-miRNA 5'-monophosphate methyltransferase OS=Xenopus laevis
GN=bcdin3d PE=2 SV=1
Length = 255
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Query: 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSY----KKKR 58
++ FD+ C+SVT W HLN+GD G+ F+ A L + L++EPQ ++ Y ++ R
Sbjct: 141 RSTFDIAFCMSVTMWIHLNYGDQGLV-TFLGHLANLCD--YLLVEPQPWKCYRSAARRLR 197
Query: 59 KLTDTIWRNFQAIEF 73
KL + +F ++
Sbjct: 198 KLGRQDFDHFHSLSI 212
>sp|D4ABH7|BN3D2_RAT Pre-miRNA 5'-monophosphate methyltransferase OS=Rattus norvegicus
GN=Bcdin3d PE=3 SV=1
Length = 285
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 6 FDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYK-KKRKLTDTI 64
FD++ C+SVT W HLN GD G+ F+ + L L++EPQ ++ Y+ R+L
Sbjct: 159 FDIVFCMSVTMWIHLNHGDRGLCE-FLAHVSSL--CSYLLVEPQPWKCYRAAARRLRKLG 215
Query: 65 WRNFQ 69
NF
Sbjct: 216 LHNFD 220
>sp|Q5RFI3|BN3D2_PONAB Pre-miRNA 5'-monophosphate methyltransferase OS=Pongo abelii
GN=BCDIN3D PE=2 SV=1
Length = 292
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSY----KKKR 58
++ FD+ C+S+T W HLN GD G+ R+ + R L++EPQ ++ Y ++ R
Sbjct: 155 RSVFDIGFCMSITMWIHLNHGDHGLWEFLARLSSLCR---YLLVEPQPWKCYRAAARRLR 211
Query: 59 KLTDTIWRNFQAIEF---FPHHFTEYLLSEVGF 88
KL + +F ++ P+ + L + G
Sbjct: 212 KLGLHDFDHFHSLTIRGDMPNQIVQILTQDHGM 244
>sp|Q91YP1|BN3D2_MOUSE Pre-miRNA 5'-monophosphate methyltransferase OS=Mus musculus
GN=Bcdin3d PE=2 SV=1
Length = 285
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRK 59
++ FD++ C+SVT W HLN GD G+ F+ + L L++EPQ ++ Y+ +
Sbjct: 156 RSVFDMVFCMSVTMWIHLNHGDRGLCE-FLAHVSSL--CSYLLVEPQPWKCYRAAAR 209
>sp|Q29S19|BN3D2_BOVIN Pre-miRNA 5'-monophosphate methyltransferase OS=Bos taurus
GN=BCDIN3D PE=2 SV=1
Length = 292
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 6 FDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRK 59
FD+ C+SVT W HLN GD G+ + + R L++EPQ ++ Y+ +
Sbjct: 158 FDIGFCMSVTMWIHLNHGDQGLWEFLAHLSSLCR---YLLVEPQPWKCYRAAAR 208
>sp|Q7Z5W3|BN3D2_HUMAN Pre-miRNA 5'-monophosphate methyltransferase OS=Homo sapiens
GN=BCDIN3D PE=1 SV=1
Length = 292
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 6 FDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSY----KKKRKLT 61
FD+ C+S+T W HLN GD G+ + + L++EPQ ++ Y ++ RKL
Sbjct: 158 FDIGFCMSITMWIHLNHGDHGLWEFLAHLSSLCH---YLLVEPQPWKCYRAAARRLRKLG 214
Query: 62 DTIWRNFQAIEF---FPHHFTEYLLSEVGF 88
+ +F ++ P+ + L + G
Sbjct: 215 LHDFDHFHSLAIRGDMPNQIVQILTQDHGM 244
>sp|A8E7D2|BN3D2_DANRE Pre-miRNA 5'-monophosphate methyltransferase OS=Danio rerio
GN=bcdin3d PE=3 SV=2
Length = 254
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 10/100 (10%)
Query: 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSY----KKKRK 59
++F + C +VT W HLN GD+ + R+ + L+LE Q ++ Y ++ RK
Sbjct: 145 SRFHLSTCFAVTMWVHLNHGDAAFLSLLSRLASH---SEYLLLEAQPWKCYRSAARRLRK 201
Query: 60 LTDTIWRNFQAIEF---FPHHFTEYLLSEVGFTKCETLGS 96
L + + +F+A++ H E+L + + G+
Sbjct: 202 LGRSDFDHFKALKIRGDMAAHAREHLEKQCSMELVQCFGN 241
>sp|Q16BG6|SYFA_ROSDO Phenylalanine--tRNA ligase alpha subunit OS=Roseobacter
denitrificans (strain ATCC 33942 / OCh 114) GN=pheS PE=3
SV=1
Length = 357
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 2/97 (2%)
Query: 16 KWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDTIWRNFQAIEFFP 75
+W + G R + +Q+ E I GF + R DT W NF A+
Sbjct: 87 EWLDVTLPARGRPRGTIHPVSQVTEEVTAIFGEMGFSVAEGPR--IDTDWYNFDALNIPG 144
Query: 76 HHFTEYLLSEVGFTKCETLGSPLHPSKGFQRPIKMFT 112
HH + T+ E P H + P+++ T
Sbjct: 145 HHPARAEMDTFYMTRAEGDDRPPHVLRTHTSPVQIRT 181
>sp|Q8W519|MMT1_MAIZE Methionine S-methyltransferase OS=Zea mays GN=MMT1 PE=2 SV=2
Length = 1091
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 69 QAIEFFPHHFTEYLLSEVGFTKCETLGSPLHPSKGFQRPIKMFTKGSKRDSRS-----GK 123
Q FP + +S F T+ P +PS GF+ K+ K SR G
Sbjct: 783 QGTLLFPLGTNGHYVSAAKFVNASTVTIPTNPSSGFRIEPKVLADTLKNVSRPWVYVCGP 842
Query: 124 EINPSG 129
INP+G
Sbjct: 843 TINPTG 848
>sp|B1YAW1|GCH3_PYRNV GTP cyclohydrolase III OS=Pyrobaculum neutrophilum (strain DSM
2338 / JCM 9278 / V24Sta) GN=gch3 PE=3 SV=1
Length = 221
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 13/50 (26%)
Query: 42 GVLILEPQGFQSYKK-------------KRKLTDTIWRNFQAIEFFPHHF 78
GV+++E +G++ + + + ++ +WR+F A+ PHHF
Sbjct: 3 GVVVVELKGYREWTESLGPRREHIIQQVQSRIQAAVWRSFTAVGALPHHF 52
>sp|Q2JW20|YC48L_SYNJA Ycf48-like protein OS=Synechococcus sp. (strain JA-3-3Ab)
GN=CYA_0848 PE=3 SV=2
Length = 334
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 41 GGVLILEPQGFQSYKKKRKLTDTIWRNFQAIEFF 74
GG LI P G +++++ +KL++ I NF +IEFF
Sbjct: 277 GGTLIHSPDGGKTWEEAKKLSN-IPANFYSIEFF 309
>sp|P27514|PHO91_YEAST Low-affinity phosphate transporter PHO91 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=PHO91 PE=1
SV=2
Length = 894
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Query: 27 IKRVFMRMYAQLREGGVLI-LEPQGFQSYKKK--RKLTDTIWRNF-QAIEFFPHHFTEYL 82
+K+ + +Y QL E I L GF KK + L + +N+ I+F H F
Sbjct: 210 LKKRLISIYTQLSELKDFIELNQTGFSKICKKFDKSLNTNLKQNYLNYIKFHSHVFNPAT 269
Query: 83 LSEVGFTKCETLGSPLHPSKGFQRPIKMFTKGSKR----DSRSGKEINPSG 129
++ + ET+ + +KG +RP F + R ++ SG E + G
Sbjct: 270 INRIQHHITETILTYASLNKGTRRPSNTFNLDADRINNDENSSGNEEDEDG 320
>sp|Q8TWR5|IF2B_METKA Translation initiation factor 2 subunit beta OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=eif2b PE=3 SV=1
Length = 138
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 28 KRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLT--DTIWRNFQAI----EFFPHHFTEY 81
+ + R Y QL E +LE + F+ K K + T+ RNF+ I + P H T+Y
Sbjct: 7 EELLERAYEQLPEE---VLEDRRFEMPKPKVSVEGKTTVIRNFKEISKKLDRDPEHITKY 63
Query: 82 LLSEVG 87
L E+G
Sbjct: 64 FLKELG 69
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,037,358
Number of Sequences: 539616
Number of extensions: 2030149
Number of successful extensions: 3983
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3962
Number of HSP's gapped (non-prelim): 26
length of query: 132
length of database: 191,569,459
effective HSP length: 98
effective length of query: 34
effective length of database: 138,687,091
effective search space: 4715361094
effective search space used: 4715361094
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)