Query psy5241
Match_columns 132
No_of_seqs 122 out of 164
Neff 4.4
Searched_HMMs 46136
Date Fri Aug 16 21:20:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5241.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5241hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06859 Bin3: Bicoid-interact 100.0 4.5E-59 9.7E-64 343.0 3.8 109 5-113 1-110 (110)
2 KOG2899|consensus 100.0 9.9E-50 2.1E-54 329.3 9.1 119 1-119 162-282 (288)
3 PF13489 Methyltransf_23: Meth 98.0 1.2E-05 2.6E-10 57.5 5.2 84 3-93 76-161 (161)
4 TIGR00452 methyltransferase, p 97.8 5.4E-05 1.2E-09 63.9 6.5 87 4-97 187-275 (314)
5 PF08241 Methyltransf_11: Meth 97.8 2.1E-05 4.6E-10 51.2 3.0 39 2-46 57-95 (95)
6 PRK15068 tRNA mo(5)U34 methylt 97.6 0.00022 4.8E-09 59.8 7.5 88 3-97 187-276 (322)
7 PF08242 Methyltransf_12: Meth 97.5 5.4E-05 1.2E-09 51.3 2.3 35 4-44 65-99 (99)
8 PF12847 Methyltransf_18: Meth 97.4 0.00019 4.1E-09 49.0 3.3 42 3-48 68-111 (112)
9 PRK14103 trans-aconitate 2-met 97.0 0.0017 3.7E-08 51.6 5.4 39 3-47 87-125 (255)
10 PTZ00098 phosphoethanolamine N 96.9 0.0016 3.5E-08 52.8 4.8 42 3-48 115-156 (263)
11 PRK15451 tRNA cmo(5)U34 methyl 96.9 0.00049 1.1E-08 54.9 1.6 85 4-94 124-229 (247)
12 PLN02396 hexaprenyldihydroxybe 96.8 0.0021 4.6E-08 54.4 5.3 87 3-97 196-291 (322)
13 PRK08317 hypothetical protein; 96.7 0.0023 5E-08 48.2 4.3 45 3-53 85-129 (241)
14 smart00138 MeTrc Methyltransfe 96.6 0.0024 5.2E-08 52.0 3.8 42 3-48 201-242 (264)
15 PRK11207 tellurite resistance 96.5 0.0035 7.6E-08 48.5 4.2 41 4-48 94-135 (197)
16 TIGR02072 BioC biotin biosynth 96.5 0.0059 1.3E-07 46.2 5.2 45 3-53 96-140 (240)
17 cd02440 AdoMet_MTases S-adenos 96.4 0.0093 2E-07 37.5 4.9 40 3-47 64-103 (107)
18 PRK11036 putative S-adenosyl-L 96.4 0.0056 1.2E-07 48.7 4.7 86 3-95 110-207 (255)
19 TIGR01934 MenG_MenH_UbiE ubiqu 96.4 0.01 2.2E-07 44.7 5.8 38 3-46 104-141 (223)
20 PLN02244 tocopherol O-methyltr 96.4 0.0047 1E-07 51.9 4.3 39 3-47 184-222 (340)
21 TIGR00536 hemK_fam HemK family 96.3 0.028 6.1E-07 45.9 8.6 83 5-113 182-283 (284)
22 PRK10611 chemotaxis methyltran 96.3 0.0033 7.1E-08 52.8 3.0 41 4-48 222-262 (287)
23 PRK09328 N5-glutamine S-adenos 96.3 0.02 4.4E-07 45.2 7.3 79 4-109 174-272 (275)
24 PRK11188 rrmJ 23S rRNA methylt 96.3 0.033 7.2E-07 43.8 8.3 66 3-96 115-190 (209)
25 TIGR00477 tehB tellurite resis 96.2 0.0078 1.7E-07 46.5 4.6 39 4-46 93-131 (195)
26 PF05891 Methyltransf_PK: AdoM 96.1 0.012 2.7E-07 48.1 5.4 88 3-107 120-208 (218)
27 PLN02232 ubiquinone biosynthes 96.1 0.0079 1.7E-07 45.2 3.9 38 3-46 42-79 (160)
28 TIGR02716 C20_methyl_CrtF C-20 96.0 0.021 4.6E-07 46.6 6.1 44 4-51 214-257 (306)
29 PRK01683 trans-aconitate 2-met 95.9 0.0087 1.9E-07 47.2 3.6 38 4-47 92-129 (258)
30 PF08003 Methyltransf_9: Prote 95.9 0.023 4.9E-07 49.0 6.2 87 4-97 181-269 (315)
31 PRK00811 spermidine synthase; 95.8 0.015 3.1E-07 47.9 4.7 83 3-89 148-233 (283)
32 PLN02490 MPBQ/MSBQ methyltrans 95.8 0.051 1.1E-06 46.6 8.1 80 3-95 176-256 (340)
33 smart00828 PKS_MT Methyltransf 95.8 0.0074 1.6E-07 46.4 2.7 38 4-47 66-103 (224)
34 TIGR03534 RF_mod_PrmC protein- 95.7 0.031 6.7E-07 43.3 6.0 79 3-108 152-250 (251)
35 PRK12335 tellurite resistance 95.7 0.018 3.8E-07 47.0 4.5 74 4-93 183-257 (287)
36 PF02353 CMAS: Mycolic acid cy 95.6 0.015 3.3E-07 48.0 4.1 41 4-48 126-166 (273)
37 PRK00107 gidB 16S rRNA methylt 95.6 0.019 4.1E-07 44.9 4.4 39 4-52 111-149 (187)
38 PRK05134 bifunctional 3-demeth 95.5 0.037 8E-07 42.9 5.7 39 4-48 113-151 (233)
39 PRK11705 cyclopropane fatty ac 95.5 0.017 3.6E-07 49.8 4.1 40 4-47 227-266 (383)
40 PRK00377 cbiT cobalt-precorrin 95.5 0.028 6E-07 43.3 4.9 40 4-52 110-149 (198)
41 PF13649 Methyltransf_25: Meth 95.5 0.011 2.4E-07 40.3 2.4 36 3-42 65-101 (101)
42 PF01739 CheR: CheR methyltran 95.5 0.011 2.3E-07 46.9 2.5 44 3-50 134-177 (196)
43 PRK07580 Mg-protoporphyrin IX 95.3 0.048 1E-06 41.8 5.7 84 4-93 126-212 (230)
44 PLN02233 ubiquinone biosynthes 95.2 0.031 6.8E-07 45.2 4.6 38 3-46 143-180 (261)
45 PLN02336 phosphoethanolamine N 95.0 0.037 8E-07 47.8 4.6 39 4-48 331-369 (475)
46 PLN02585 magnesium protoporphy 94.9 0.11 2.4E-06 43.9 7.2 82 4-92 211-296 (315)
47 PRK11873 arsM arsenite S-adeno 94.8 0.042 9.1E-07 43.9 4.3 39 3-47 144-182 (272)
48 PRK11805 N5-glutamine S-adenos 94.8 0.037 8E-07 46.3 3.9 30 20-49 232-264 (307)
49 PRK10258 biotin biosynthesis p 94.8 0.04 8.7E-07 43.4 3.9 39 3-47 101-139 (251)
50 PRK00517 prmA ribosomal protei 94.7 0.048 1.1E-06 43.6 4.4 34 5-47 179-212 (250)
51 PLN02336 phosphoethanolamine N 94.7 0.035 7.5E-07 47.9 3.7 43 3-49 101-143 (475)
52 TIGR00417 speE spermidine synt 94.6 0.059 1.3E-06 43.7 4.6 85 3-91 143-230 (270)
53 COG2227 UbiG 2-polyprenyl-3-me 94.6 0.029 6.4E-07 46.7 2.8 86 4-97 123-217 (243)
54 TIGR02021 BchM-ChlM magnesium 94.6 0.095 2.1E-06 40.5 5.5 82 4-93 118-204 (219)
55 PF13847 Methyltransf_31: Meth 94.5 0.039 8.4E-07 40.2 3.1 42 4-51 72-113 (152)
56 PF11968 DUF3321: Putative met 94.5 0.57 1.2E-05 38.6 10.1 88 2-116 101-195 (219)
57 TIGR00740 methyltransferase, p 94.5 0.05 1.1E-06 42.7 3.8 40 4-47 121-160 (239)
58 PF05175 MTS: Methyltransferas 94.4 0.079 1.7E-06 39.9 4.7 48 3-55 96-147 (170)
59 PRK08287 cobalt-precorrin-6Y C 94.2 0.073 1.6E-06 40.3 4.2 36 4-48 96-131 (187)
60 PRK00216 ubiE ubiquinone/menaq 94.1 0.083 1.8E-06 40.1 4.3 38 3-46 119-156 (239)
61 TIGR00537 hemK_rel_arch HemK-r 94.0 0.082 1.8E-06 39.7 4.0 43 4-48 81-140 (179)
62 TIGR01177 conserved hypothetic 93.9 0.12 2.6E-06 43.1 5.1 80 4-111 247-329 (329)
63 PLN02366 spermidine synthase 93.8 0.074 1.6E-06 44.9 3.8 85 3-91 163-251 (308)
64 PF01209 Ubie_methyltran: ubiE 93.7 0.084 1.8E-06 42.6 3.8 39 2-46 113-151 (233)
65 TIGR00406 prmA ribosomal prote 93.7 0.12 2.6E-06 42.4 4.7 36 3-47 223-258 (288)
66 TIGR00138 gidB 16S rRNA methyl 93.5 0.098 2.1E-06 40.4 3.7 35 3-47 107-141 (181)
67 PRK00121 trmB tRNA (guanine-N( 93.4 0.11 2.5E-06 40.3 4.0 53 3-56 109-163 (202)
68 PRK06922 hypothetical protein; 93.2 0.11 2.5E-06 48.7 4.3 45 3-47 485-536 (677)
69 KOG3178|consensus 93.1 0.12 2.6E-06 45.0 4.0 39 4-46 235-273 (342)
70 COG1352 CheR Methylase of chem 93.1 0.17 3.7E-06 42.3 4.9 42 4-49 201-242 (268)
71 PLN03075 nicotianamine synthas 93.1 0.12 2.5E-06 43.9 3.9 86 4-118 194-279 (296)
72 TIGR00438 rrmJ cell division p 93.0 0.23 5E-06 37.6 5.0 45 4-48 97-146 (188)
73 COG4798 Predicted methyltransf 92.6 0.31 6.8E-06 40.4 5.6 65 24-96 142-206 (238)
74 PF00891 Methyltransf_2: O-met 92.6 0.17 3.7E-06 39.6 3.9 40 4-47 157-198 (241)
75 PRK04266 fibrillarin; Provisio 92.5 0.77 1.7E-05 36.9 7.7 72 4-96 140-211 (226)
76 TIGR02752 MenG_heptapren 2-hep 92.5 0.19 4.2E-06 38.7 4.1 38 3-46 112-149 (231)
77 PRK00536 speE spermidine synth 92.4 0.18 4E-06 41.9 4.0 75 4-91 138-213 (262)
78 TIGR03840 TMPT_Se_Te thiopurin 92.3 0.21 4.5E-06 39.7 4.2 40 4-47 112-151 (213)
79 PRK15001 SAM-dependent 23S rib 92.3 0.32 7E-06 42.3 5.6 51 4-55 297-347 (378)
80 PRK13942 protein-L-isoaspartat 92.2 0.061 1.3E-06 42.2 1.0 34 3-48 143-176 (212)
81 PF05401 NodS: Nodulation prot 92.2 0.17 3.8E-06 41.1 3.6 95 3-115 104-198 (201)
82 PRK14967 putative methyltransf 92.1 0.42 9.1E-06 37.3 5.6 30 26-55 137-166 (223)
83 PF03848 TehB: Tellurite resis 92.0 0.18 3.9E-06 40.2 3.4 40 4-47 93-132 (192)
84 TIGR01983 UbiG ubiquinone bios 92.0 0.16 3.4E-06 38.9 3.0 39 4-48 111-149 (224)
85 PF06080 DUF938: Protein of un 92.0 0.3 6.6E-06 39.6 4.7 97 3-113 100-204 (204)
86 PRK09489 rsmC 16S ribosomal RN 91.6 0.33 7.2E-06 41.4 4.9 53 3-56 259-311 (342)
87 PF03291 Pox_MCEL: mRNA cappin 91.6 0.21 4.6E-06 42.6 3.7 42 4-48 144-186 (331)
88 PRK01544 bifunctional N5-gluta 91.3 0.3 6.5E-06 43.7 4.4 45 4-48 205-269 (506)
89 PF05219 DREV: DREV methyltran 91.0 0.31 6.7E-06 41.2 3.9 83 4-97 150-242 (265)
90 TIGR03438 probable methyltrans 90.6 0.41 8.8E-06 39.5 4.4 38 7-46 138-175 (301)
91 PRK14968 putative methyltransf 90.3 0.51 1.1E-05 34.7 4.2 23 26-48 126-148 (188)
92 PRK04457 spermidine synthase; 90.2 0.36 7.8E-06 39.4 3.7 40 4-47 135-176 (262)
93 PTZ00146 fibrillarin; Provisio 90.0 2.2 4.8E-05 36.3 8.3 68 4-96 201-272 (293)
94 PRK00312 pcm protein-L-isoaspa 89.3 0.39 8.5E-06 37.0 3.1 33 4-48 143-175 (212)
95 TIGR02469 CbiT precorrin-6Y C5 88.9 0.64 1.4E-05 31.5 3.6 26 22-47 96-121 (124)
96 PLN02781 Probable caffeoyl-CoA 88.8 0.9 1.9E-05 36.4 4.9 43 3-54 142-184 (234)
97 TIGR03704 PrmC_rel_meth putati 88.2 0.57 1.2E-05 37.9 3.4 29 20-48 185-216 (251)
98 PRK13944 protein-L-isoaspartat 87.8 0.65 1.4E-05 36.0 3.4 33 4-48 141-173 (205)
99 PRK11088 rrmA 23S rRNA methylt 87.8 0.5 1.1E-05 38.1 2.9 32 3-47 149-180 (272)
100 PRK01581 speE spermidine synth 87.7 0.82 1.8E-05 40.3 4.3 45 3-50 224-270 (374)
101 TIGR00080 pimt protein-L-isoas 87.5 0.46 9.9E-06 36.9 2.4 35 4-50 145-179 (215)
102 KOG4300|consensus 87.3 1 2.2E-05 37.8 4.5 44 2-55 142-189 (252)
103 PRK07402 precorrin-6B methylas 87.3 0.93 2E-05 34.6 3.9 25 25-49 119-143 (196)
104 PRK03612 spermidine synthase; 87.1 0.89 1.9E-05 40.7 4.3 44 3-49 371-416 (521)
105 TIGR03587 Pse_Me-ase pseudamin 87.0 1 2.3E-05 35.3 4.2 43 3-50 103-145 (204)
106 COG2230 Cfa Cyclopropane fatty 86.9 0.61 1.3E-05 39.6 3.0 41 4-48 136-176 (283)
107 PRK13255 thiopurine S-methyltr 86.8 0.89 1.9E-05 36.2 3.7 39 4-46 115-153 (218)
108 TIGR03533 L3_gln_methyl protei 86.7 0.77 1.7E-05 37.8 3.4 30 20-49 220-252 (284)
109 COG0500 SmtA SAM-dependent met 86.5 1.7 3.7E-05 27.0 4.2 43 4-53 118-160 (257)
110 PLN02823 spermine synthase 86.3 0.86 1.9E-05 39.0 3.6 45 3-50 174-222 (336)
111 KOG1270|consensus 86.2 0.5 1.1E-05 40.3 2.1 86 3-95 156-249 (282)
112 PRK06202 hypothetical protein; 85.9 1.6 3.4E-05 34.1 4.7 84 3-93 127-220 (232)
113 COG0421 SpeE Spermidine syntha 85.9 1.3 2.8E-05 37.2 4.4 36 5-48 149-190 (282)
114 COG2226 UbiE Methylase involve 84.7 1.4 3.1E-05 36.2 4.1 39 2-46 116-154 (238)
115 PRK10901 16S rRNA methyltransf 83.4 1.8 3.8E-05 37.6 4.3 21 27-47 351-371 (427)
116 TIGR02081 metW methionine bios 83.1 2.7 5.8E-05 32.0 4.7 85 3-97 73-169 (194)
117 PF01564 Spermine_synth: Sperm 81.8 0.75 1.6E-05 37.3 1.3 80 5-89 150-233 (246)
118 PRK11783 rlmL 23S rRNA m(2)G24 80.5 2.1 4.7E-05 39.7 4.0 45 4-48 607-656 (702)
119 PRK14904 16S rRNA methyltransf 80.4 2.2 4.7E-05 37.2 3.7 45 4-48 317-377 (445)
120 PRK14902 16S rRNA methyltransf 80.3 2.6 5.6E-05 36.6 4.2 43 4-46 319-377 (444)
121 PF07942 N2227: N2227-like pro 79.1 3.3 7.1E-05 34.8 4.3 76 3-93 163-240 (270)
122 PF01234 NNMT_PNMT_TEMT: NNMT/ 78.7 1.1 2.4E-05 37.3 1.4 61 25-93 176-237 (256)
123 PF06325 PrmA: Ribosomal prote 78.4 1.8 4E-05 36.5 2.6 36 3-47 223-258 (295)
124 TIGR00091 tRNA (guanine-N(7)-) 78.4 4.2 9.1E-05 31.2 4.4 27 28-55 112-138 (194)
125 PRK14966 unknown domain/N5-glu 78.1 2.4 5.2E-05 37.9 3.4 66 20-112 350-418 (423)
126 PRK05785 hypothetical protein; 77.7 3.7 8.1E-05 32.6 4.1 39 2-47 107-145 (226)
127 COG2264 PrmA Ribosomal protein 75.6 4.5 9.7E-05 34.6 4.2 37 3-48 227-263 (300)
128 PRK15128 23S rRNA m(5)C1962 me 75.4 2.8 6.1E-05 36.6 3.0 43 4-47 292-338 (396)
129 TIGR00446 nop2p NOL1/NOP2/sun 75.3 4.2 9.1E-05 33.0 3.8 18 28-45 179-196 (264)
130 COG4122 Predicted O-methyltran 75.3 4 8.7E-05 33.3 3.7 74 3-90 130-203 (219)
131 TIGR00563 rsmB ribosomal RNA s 74.6 5 0.00011 34.7 4.4 20 28-47 348-367 (426)
132 PRK14901 16S rRNA methyltransf 74.3 4.8 0.0001 35.0 4.2 43 4-46 324-382 (434)
133 PF05148 Methyltransf_8: Hypot 74.0 2.9 6.3E-05 34.5 2.6 81 2-116 119-200 (219)
134 PF13659 Methyltransf_26: Meth 73.8 2.5 5.3E-05 28.8 1.9 44 2-47 67-114 (117)
135 PF12147 Methyltransf_20: Puta 73.7 4.4 9.6E-05 35.1 3.7 77 18-94 218-297 (311)
136 PRK14903 16S rRNA methyltransf 70.0 5.6 0.00012 34.8 3.6 23 28-50 346-368 (431)
137 PLN02476 O-methyltransferase 69.7 8.1 0.00018 32.5 4.4 73 4-92 193-265 (278)
138 PF10672 Methyltrans_SAM: S-ad 69.3 5.6 0.00012 33.6 3.3 42 3-48 193-238 (286)
139 PF01596 Methyltransf_3: O-met 69.2 6.5 0.00014 31.3 3.6 71 4-91 120-191 (205)
140 KOG3045|consensus 68.8 5.4 0.00012 34.6 3.2 37 2-46 225-262 (325)
141 KOG1975|consensus 67.7 5.2 0.00011 35.5 2.9 45 3-50 194-239 (389)
142 PRK13943 protein-L-isoaspartat 66.4 7.4 0.00016 33.1 3.5 32 4-47 148-179 (322)
143 COG2242 CobL Precorrin-6B meth 66.0 7.2 0.00016 31.4 3.2 34 5-48 102-135 (187)
144 COG1092 Predicted SAM-dependen 65.2 9.1 0.0002 33.8 4.0 43 4-47 289-335 (393)
145 PLN02589 caffeoyl-CoA O-methyl 64.8 11 0.00023 31.0 4.1 43 4-55 155-197 (247)
146 COG0275 Predicted S-adenosylme 63.8 7.1 0.00015 33.9 3.0 30 18-47 214-243 (314)
147 KOG2361|consensus 63.5 11 0.00023 32.1 3.9 104 2-120 141-253 (264)
148 PF10294 Methyltransf_16: Puta 61.8 13 0.00029 28.2 3.9 38 3-46 117-154 (173)
149 PF03141 Methyltransf_29: Puta 61.6 2.9 6.2E-05 38.4 0.2 44 4-52 180-223 (506)
150 TIGR00006 S-adenosyl-methyltra 61.4 6.4 0.00014 33.6 2.3 30 18-47 210-239 (305)
151 PF03269 DUF268: Caenorhabditi 61.1 6.9 0.00015 31.5 2.2 45 4-48 62-111 (177)
152 PRK00050 16S rRNA m(4)C1402 me 60.1 7.3 0.00016 33.0 2.4 30 18-47 206-235 (296)
153 PHA03411 putative methyltransf 57.5 10 0.00023 32.2 2.9 72 4-91 125-210 (279)
154 PF01135 PCMT: Protein-L-isoas 56.3 3.7 8E-05 32.8 -0.0 36 3-50 139-174 (209)
155 COG1041 Predicted DNA modifica 56.1 30 0.00065 30.4 5.5 62 24-114 286-347 (347)
156 PF15514 ThaI: Restriction end 55.0 5.8 0.00013 31.9 0.9 29 3-38 109-142 (202)
157 PF01555 N6_N4_Mtase: DNA meth 52.3 12 0.00025 27.8 2.1 71 26-117 34-114 (231)
158 KOG1661|consensus 52.1 12 0.00026 31.4 2.3 36 2-49 159-194 (237)
159 COG4976 Predicted methyltransf 51.1 9.2 0.0002 32.7 1.6 75 2-96 185-266 (287)
160 PF13578 Methyltransf_24: Meth 50.2 13 0.00028 25.2 1.9 25 22-46 79-103 (106)
161 KOG1540|consensus 50.2 24 0.00052 30.5 3.9 82 3-92 175-278 (296)
162 PF02384 N6_Mtase: N-6 DNA Met 49.3 34 0.00074 27.7 4.6 95 3-117 123-236 (311)
163 PRK06853 indolepyruvate oxidor 49.3 23 0.00049 27.3 3.4 31 4-48 67-97 (197)
164 PLN02672 methionine S-methyltr 49.1 17 0.00038 36.1 3.3 32 18-49 242-279 (1082)
165 PF01795 Methyltransf_5: MraW 48.8 8.8 0.00019 33.0 1.1 30 18-47 211-240 (310)
166 PRK06274 indolepyruvate oxidor 48.1 23 0.00051 27.1 3.3 34 3-50 65-98 (197)
167 PF01558 POR: Pyruvate ferredo 47.5 20 0.00043 26.8 2.8 40 4-57 56-95 (173)
168 PRK11524 putative methyltransf 47.4 21 0.00045 29.2 3.0 22 27-48 59-80 (284)
169 PF08351 DUF1726: Domain of un 45.1 22 0.00048 25.0 2.5 29 29-57 26-54 (92)
170 KOG1541|consensus 44.2 48 0.0011 28.2 4.8 53 3-55 110-167 (270)
171 KOG3201|consensus 44.2 33 0.00071 28.0 3.6 41 2-48 100-141 (201)
172 KOG3987|consensus 44.2 9.7 0.00021 32.3 0.7 46 5-56 169-216 (288)
173 COG4627 Uncharacterized protei 43.7 15 0.00033 29.6 1.7 41 4-48 46-86 (185)
174 TIGR02175 PorC_KorC 2-oxoacid: 40.9 24 0.00051 26.9 2.3 31 4-48 65-97 (177)
175 PF06557 DUF1122: Protein of u 40.9 39 0.00084 27.1 3.6 64 23-99 61-127 (170)
176 KOG1269|consensus 39.5 28 0.00061 30.4 2.8 65 2-74 175-239 (364)
177 PRK08338 2-oxoglutarate ferred 36.9 37 0.00079 25.8 2.8 35 3-51 62-96 (170)
178 PRK13699 putative methylase; P 36.3 42 0.00091 26.9 3.2 22 25-46 49-70 (227)
179 TIGR03439 methyl_EasF probable 35.8 45 0.00097 28.5 3.4 38 6-46 157-195 (319)
180 PRK11933 yebU rRNA (cytosine-C 34.8 34 0.00073 30.8 2.6 43 4-46 182-240 (470)
181 PRK14121 tRNA (guanine-N(7)-)- 34.8 74 0.0016 28.2 4.7 27 28-55 215-241 (390)
182 KOG2904|consensus 34.3 44 0.00094 29.3 3.1 30 20-49 254-286 (328)
183 PHA03412 putative methyltransf 34.3 72 0.0016 26.6 4.3 46 4-51 113-164 (241)
184 PRK08537 2-oxoglutarate ferred 32.5 73 0.0016 24.0 3.8 34 4-51 66-99 (177)
185 COG0144 Sun tRNA and rRNA cyto 32.2 41 0.00088 28.8 2.6 18 28-45 268-285 (355)
186 COG0286 HsdM Type I restrictio 32.2 2.9E+02 0.0062 24.8 8.0 99 3-119 262-381 (489)
187 PF02527 GidB: rRNA small subu 32.0 56 0.0012 25.6 3.2 38 2-49 112-149 (184)
188 PLN02595 cytochrome c oxidase 31.4 12 0.00026 27.7 -0.7 11 22-32 88-98 (102)
189 PF11378 DUF3181: Protein of u 31.3 28 0.0006 25.1 1.2 27 13-40 15-41 (87)
190 KOG1271|consensus 31.3 51 0.0011 27.5 2.9 49 4-52 135-185 (227)
191 TIGR03485 cas_csx13_N CRISPR-a 30.7 51 0.0011 28.8 2.9 38 21-58 243-286 (316)
192 KOG1663|consensus 30.1 42 0.00092 28.1 2.3 43 2-53 146-188 (237)
193 KOG3487|consensus 29.5 42 0.00092 26.0 2.1 23 15-37 82-104 (139)
194 PRK08534 pyruvate ferredoxin o 29.5 42 0.00092 25.6 2.1 35 4-52 65-100 (181)
195 PRK13256 thiopurine S-methyltr 29.0 58 0.0012 26.5 2.9 40 5-48 124-163 (226)
196 PRK08441 oorC 2-oxoglutarate-a 28.9 72 0.0016 24.5 3.3 35 4-52 67-101 (183)
197 KOG1009|consensus 28.8 29 0.00064 31.4 1.2 26 23-50 225-250 (434)
198 PRK14028 pyruvate ferredoxin o 28.5 59 0.0013 26.9 2.9 36 3-49 65-100 (312)
199 PF02390 Methyltransf_4: Putat 28.0 47 0.001 25.9 2.1 27 29-56 114-140 (195)
200 PF10423 AMNp_N: Bacterial AMP 27.8 23 0.0005 27.8 0.4 22 67-88 67-88 (160)
201 KOG1709|consensus 27.4 54 0.0012 27.9 2.5 33 25-65 183-215 (271)
202 COG2521 Predicted archaeal met 27.1 53 0.0011 28.2 2.4 52 28-95 225-277 (287)
203 PF10354 DUF2431: Domain of un 27.0 72 0.0016 24.5 3.0 24 27-50 104-130 (166)
204 COG4106 Tam Trans-aconitate me 26.7 70 0.0015 27.2 3.0 42 4-51 91-132 (257)
205 PHA02097 hypothetical protein 26.4 15 0.00032 24.5 -0.8 30 16-51 1-30 (59)
206 COG2518 Pcm Protein-L-isoaspar 26.1 52 0.0011 26.9 2.1 34 4-49 137-170 (209)
207 PRK05844 pyruvate flavodoxin o 25.5 52 0.0011 25.3 1.9 30 5-48 66-97 (186)
208 PRK14029 pyruvate/ketoisovaler 25.3 69 0.0015 24.6 2.6 35 3-51 64-100 (185)
209 PF04848 Pox_A22: Poxvirus A22 25.2 1.4E+02 0.0031 22.9 4.3 32 20-53 33-64 (143)
210 PF03464 eRF1_2: eRF1 domain 2 24.0 1.1E+02 0.0023 22.3 3.3 35 5-39 19-64 (133)
211 COG0220 Predicted S-adenosylme 23.8 97 0.0021 25.2 3.3 28 29-57 145-172 (227)
212 PF06962 rRNA_methylase: Putat 23.4 55 0.0012 25.1 1.7 20 28-47 72-91 (140)
213 COG5222 Uncharacterized conser 23.0 42 0.00092 29.7 1.1 36 39-74 234-276 (427)
214 COG2890 HemK Methylase of poly 22.5 90 0.002 25.8 2.9 28 21-48 208-238 (280)
215 PF01728 FtsJ: FtsJ-like methy 22.2 1.1E+02 0.0023 22.7 3.1 45 4-48 90-139 (181)
216 KOG2198|consensus 22.0 80 0.0017 28.2 2.6 29 17-45 263-293 (375)
217 PF05430 Methyltransf_30: S-ad 21.1 60 0.0013 24.0 1.5 54 28-113 70-123 (124)
218 COG5459 Predicted rRNA methyla 21.1 95 0.0021 28.3 2.9 32 27-58 204-239 (484)
219 PF03540 TFIID_30kDa: Transcri 21.0 55 0.0012 21.3 1.1 16 75-90 4-19 (51)
220 TIGR00027 mthyl_TIGR00027 meth 20.9 2.1E+02 0.0046 23.3 4.8 80 7-93 160-248 (260)
221 PTZ00376 aspartate aminotransf 20.5 1.7E+02 0.0036 24.6 4.2 39 19-57 102-140 (404)
222 PF08245 Mur_ligase_M: Mur lig 20.5 1E+02 0.0022 22.7 2.6 44 5-49 71-116 (188)
No 1
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=100.00 E-value=4.5e-59 Score=342.99 Aligned_cols=109 Identities=59% Similarity=1.123 Sum_probs=81.3
Q ss_pred ceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccchhhHhhhcCChhhhccccceEEcccchHHHHHh
Q psy5241 5 QFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDTIWRNFQAIEFFPHHFTEYLLS 84 (132)
Q Consensus 5 ~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpWksY~r~~kl~~~~~~~~~~L~lrP~~f~~yLl~ 84 (132)
+|||||||||||||||||||+||++||++|+++|+|||+||||||||+||++++++++++++||++|++||++|++||++
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP~~F~~~L~~ 80 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLRPDQFEDYLLE 80 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----GGGHHHHHTS
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEEChHHHHHHHHh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -ccCCeeEEEcCCCCCCCCCCCcceEEEEc
Q psy5241 85 -EVGFTKCETLGSPLHPSKGFQRPIKMFTK 113 (132)
Q Consensus 85 -~vGF~~~~~l~~~~~~~~gf~RpI~lf~K 113 (132)
+|||++++.++.+.++++||+|||++|+|
T Consensus 81 ~evGF~~~e~~~~~~~~~~gF~RpI~lf~K 110 (110)
T PF06859_consen 81 PEVGFSSVEELGVPENSSKGFDRPIYLFRK 110 (110)
T ss_dssp TTT---EEEEE-------------EEEEE-
T ss_pred cccceEEEEEcccCCCCCCCCCCcEEEEeC
Confidence 79999999999988788999999999997
No 2
>KOG2899|consensus
Probab=100.00 E-value=9.9e-50 Score=329.30 Aligned_cols=119 Identities=42% Similarity=0.812 Sum_probs=112.8
Q ss_pred CCCcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccchhhHhhhcCChhhhccccceEEcccchHH
Q psy5241 1 MEQAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDTIWRNFQAIEFFPHHFTE 80 (132)
Q Consensus 1 ~~~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpWksY~r~~kl~~~~~~~~~~L~lrP~~f~~ 80 (132)
|++++|||||||||||||||||||+||++||+|++++|+|||+||||||||+||++++|+++++..||..|+++|+.|++
T Consensus 162 ~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWksY~kaar~~e~~~~ny~~i~lkp~~f~~ 241 (288)
T KOG2899|consen 162 MIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWKSYKKAARRSEKLAANYFKIFLKPEDFED 241 (288)
T ss_pred hccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchHHHHHHHHHHHHhhcCccceecCHHHHHh
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhc-cCCeeEEEcC-CCCCCCCCCCcceEEEEcCCCCCC
Q psy5241 81 YLLSE-VGFTKCETLG-SPLHPSKGFQRPIKMFTKGSKRDS 119 (132)
Q Consensus 81 yLl~~-vGF~~~~~l~-~~~~~~~gf~RpI~lf~K~~~~~~ 119 (132)
+|++. +||++++.++ ...+.++||+|||++|+|+..+..
T Consensus 242 ~l~q~~vgle~~e~~~~~~~~~skgf~R~i~~y~Kk~~~~~ 282 (288)
T KOG2899|consen 242 WLNQIVVGLESVEDLGLIVSAASKGFDRPILLYRKKLHPKT 282 (288)
T ss_pred hhhhhhhheeeeccccccccccCccccceeeeeeccCCCcc
Confidence 99994 9999999999 456679999999999999987754
No 3
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.01 E-value=1.2e-05 Score=57.50 Aligned_cols=84 Identities=20% Similarity=0.289 Sum_probs=55.7
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccchhhHh--hhcCChhhhccccceEEcccchHH
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKK--KRKLTDTIWRNFQAIEFFPHHFTE 80 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpWksY~r--~~kl~~~~~~~~~~L~lrP~~f~~ 80 (132)
...||+|+|..|.=||. | ...+++.+++.|+|||++++.-..=.++.. ..+..-....+-..--+.++++.+
T Consensus 76 ~~~fD~i~~~~~l~~~~----d--~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (161)
T PF13489_consen 76 DGSFDLIICNDVLEHLP----D--PEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQ 149 (161)
T ss_dssp SSSEEEEEEESSGGGSS----H--HHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHH
T ss_pred ccchhhHhhHHHHhhcc----c--HHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHH
Confidence 46899999999988877 2 889999999999999999998754222221 111111111111223345678888
Q ss_pred HHHhccCCeeEEE
Q psy5241 81 YLLSEVGFTKCET 93 (132)
Q Consensus 81 yLl~~vGF~~~~~ 93 (132)
.| ++.||+.+++
T Consensus 150 ll-~~~G~~iv~~ 161 (161)
T PF13489_consen 150 LL-EQAGFEIVEE 161 (161)
T ss_dssp HH-HHTTEEEEE-
T ss_pred HH-HHCCCEEEEC
Confidence 55 5679998764
No 4
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=97.80 E-value=5.4e-05 Score=63.91 Aligned_cols=87 Identities=18% Similarity=0.283 Sum_probs=56.9
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccchhhHhhhcCChhhhccccceEEcc--cchHHH
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDTIWRNFQAIEFFP--HHFTEY 81 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpWksY~r~~kl~~~~~~~~~~L~lrP--~~f~~y 81 (132)
..||+|+|+.|.-| +. -...+|+.+++.|+|||.||||-.....-..........+..+.+.-+.| +.+.++
T Consensus 187 ~~FD~V~s~gvL~H--~~----dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~ 260 (314)
T TIGR00452 187 YAFDTVFSMGVLYH--RK----SPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNW 260 (314)
T ss_pred CCcCEEEEcchhhc--cC----CHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHH
Confidence 47999999998744 32 34679999999999999999986544332221112222233333444555 466776
Q ss_pred HHhccCCeeEEEcCCC
Q psy5241 82 LLSEVGFTKCETLGSP 97 (132)
Q Consensus 82 Ll~~vGF~~~~~l~~~ 97 (132)
| +++||+.++.....
T Consensus 261 L-~~aGF~~V~i~~~~ 275 (314)
T TIGR00452 261 L-EKVGFENFRILDVL 275 (314)
T ss_pred H-HHCCCeEEEEEecc
Confidence 6 56899999876543
No 5
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=97.78 E-value=2.1e-05 Score=51.22 Aligned_cols=39 Identities=26% Similarity=0.499 Sum_probs=34.4
Q ss_pred CCcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEE
Q psy5241 2 EQAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLIL 46 (132)
Q Consensus 2 ~~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liL 46 (132)
..+.||+|+|.++-.|+ +-..++++.+++.|+|||.|++
T Consensus 57 ~~~sfD~v~~~~~~~~~------~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 57 PDNSFDVVFSNSVLHHL------EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp -TT-EEEEEEESHGGGS------SHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccccccccceeec------cCHHHHHHHHHHHcCcCeEEeC
Confidence 45789999999998888 8899999999999999999986
No 6
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=97.62 E-value=0.00022 Score=59.79 Aligned_cols=88 Identities=18% Similarity=0.337 Sum_probs=55.6
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccchhhHhhhcCChhhhccccceEEcc--cchHH
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDTIWRNFQAIEFFP--HHFTE 80 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpWksY~r~~kl~~~~~~~~~~L~lrP--~~f~~ 80 (132)
...||+|+|+.|.- |+. -...+|+.+++.|+|||.||+|..-...-..........+..+.++-+-| +.+.+
T Consensus 187 ~~~FD~V~s~~vl~--H~~----dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~ 260 (322)
T PRK15068 187 LKAFDTVFSMGVLY--HRR----SPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKN 260 (322)
T ss_pred cCCcCEEEECChhh--ccC----CHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHH
Confidence 35799999998843 332 25789999999999999999985433222111111122233334444444 46777
Q ss_pred HHHhccCCeeEEEcCCC
Q psy5241 81 YLLSEVGFTKCETLGSP 97 (132)
Q Consensus 81 yLl~~vGF~~~~~l~~~ 97 (132)
+| ++.||+.++....+
T Consensus 261 ~L-~~aGF~~i~~~~~~ 276 (322)
T PRK15068 261 WL-ERAGFKDVRIVDVS 276 (322)
T ss_pred HH-HHcCCceEEEEeCC
Confidence 66 56799988876543
No 7
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.55 E-value=5.4e-05 Score=51.34 Aligned_cols=35 Identities=29% Similarity=0.622 Sum_probs=24.8
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEE
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVL 44 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~l 44 (132)
++||+|+|.+|.-|+ +-++.+++++++.|+|||+|
T Consensus 65 ~~fD~V~~~~vl~~l------~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 65 ESFDLVVASNVLHHL------EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---SEEEEE-TTS--------S-HHHHHHHHTTT-TSS-EE
T ss_pred cccceehhhhhHhhh------hhHHHHHHHHHHHcCCCCCC
Confidence 489999999999998 77889999999999999986
No 8
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=97.37 E-value=0.00019 Score=49.00 Aligned_cols=42 Identities=26% Similarity=0.530 Sum_probs=34.7
Q ss_pred CcceeEEEEeee-e-eeeeccCCcHHHHHHHHHHHHhhcCCcEEEEec
Q psy5241 3 QAQFDVILCLSV-T-KWFHLNWGDSGIKRVFMRMYAQLREGGVLILEP 48 (132)
Q Consensus 3 ~~~fDvIlclSV-T-KWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEp 48 (132)
.++||+|+|..+ . -++|+ +-.+++++++.+.|+|||+||++.
T Consensus 68 ~~~~D~v~~~~~~~~~~~~~----~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 68 LEPFDLVICSGFTLHFLLPL----DERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SSCEEEEEECSGSGGGCCHH----HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCEEEECCCccccccch----hHHHHHHHHHHHhcCCCcEEEEEE
Confidence 357999999882 2 25555 889999999999999999999975
No 9
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=96.96 E-value=0.0017 Score=51.59 Aligned_cols=39 Identities=15% Similarity=0.405 Sum_probs=33.6
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEe
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILE 47 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLE 47 (132)
.+.||+|+|..+..|+. | ...+++++++.|+|||.|+++
T Consensus 87 ~~~fD~v~~~~~l~~~~----d--~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 87 KPDTDVVVSNAALQWVP----E--HADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred CCCceEEEEehhhhhCC----C--HHHHHHHHHHhCCCCcEEEEE
Confidence 35799999999988874 3 478999999999999999986
No 10
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=96.88 E-value=0.0016 Score=52.77 Aligned_cols=42 Identities=26% Similarity=0.553 Sum_probs=32.8
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEec
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEP 48 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEp 48 (132)
...||+|+|..+. .|+ +++-..++|++++++|+|||.|++..
T Consensus 115 ~~~FD~V~s~~~l--~h~--~~~d~~~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 115 ENTFDMIYSRDAI--LHL--SYADKKKLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred CCCeEEEEEhhhH--HhC--CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 3579999986432 343 45568999999999999999999853
No 11
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=96.86 E-value=0.00049 Score=54.86 Aligned_cols=85 Identities=15% Similarity=0.325 Sum_probs=51.8
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEE-ec--------cc-----chhhHhhhcCChhhhc---
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLIL-EP--------QG-----FQSYKKKRKLTDTIWR--- 66 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liL-Ep--------Qp-----WksY~r~~kl~~~~~~--- 66 (132)
+.||+|+|..+.-++ + ++....+|+++++.|+|||.|++ |. ++ |..|.+....++....
T Consensus 124 ~~~D~vv~~~~l~~l--~--~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~ 199 (247)
T PRK15451 124 ENASMVVLNFTLQFL--E--PSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKR 199 (247)
T ss_pred CCCCEEehhhHHHhC--C--HHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 458998887665443 3 45588999999999999999987 21 22 3333334445543222
Q ss_pred -cccceEEcc---cchHHHHHhccCCeeEEEc
Q psy5241 67 -NFQAIEFFP---HHFTEYLLSEVGFTKCETL 94 (132)
Q Consensus 67 -~~~~L~lrP---~~f~~yLl~~vGF~~~~~l 94 (132)
.+.++ +.| +...+ |+++.||+.++.+
T Consensus 200 ~~~~~~-~~~~~~~~~~~-~L~~aGF~~v~~~ 229 (247)
T PRK15451 200 SMLENV-MLTDSVETHKA-RLHKAGFEHSELW 229 (247)
T ss_pred HHHHhh-cccCCHHHHHH-HHHHcCchhHHHH
Confidence 12222 223 45556 4567899866543
No 12
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=96.84 E-value=0.0021 Score=54.41 Aligned_cols=87 Identities=16% Similarity=0.209 Sum_probs=55.8
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEec--ccchhhHhhhcCChhhh-------ccccceEE
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEP--QGFQSYKKKRKLTDTIW-------RNFQAIEF 73 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEp--QpWksY~r~~kl~~~~~-------~~~~~L~l 73 (132)
.++||+|+|+-|.-++. | ...|++.+++.|+|||.|++.- ..+.+|...-...+.+. ..+.. -+
T Consensus 196 ~~~FD~Vi~~~vLeHv~----d--~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~-f~ 268 (322)
T PLN02396 196 GRKFDAVLSLEVIEHVA----N--PAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSS-FV 268 (322)
T ss_pred cCCCCEEEEhhHHHhcC----C--HHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccC-CC
Confidence 35799999999875443 3 4689999999999999999873 23445543211111000 11111 24
Q ss_pred cccchHHHHHhccCCeeEEEcCCC
Q psy5241 74 FPHHFTEYLLSEVGFTKCETLGSP 97 (132)
Q Consensus 74 rP~~f~~yLl~~vGF~~~~~l~~~ 97 (132)
.|+.+.+.|. +.||+.++..|..
T Consensus 269 tp~eL~~lL~-~aGf~i~~~~G~~ 291 (322)
T PLN02396 269 TPEELSMILQ-RASVDVKEMAGFV 291 (322)
T ss_pred CHHHHHHHHH-HcCCeEEEEeeeE
Confidence 5888888665 5799998886644
No 13
>PRK08317 hypothetical protein; Provisional
Probab=96.72 E-value=0.0023 Score=48.22 Aligned_cols=45 Identities=20% Similarity=0.375 Sum_probs=35.1
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccchh
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQS 53 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpWks 53 (132)
...||+|+|.-+..++. | ...+++.+++.|+|||.++++...|.+
T Consensus 85 ~~~~D~v~~~~~~~~~~----~--~~~~l~~~~~~L~~gG~l~~~~~~~~~ 129 (241)
T PRK08317 85 DGSFDAVRSDRVLQHLE----D--PARALAEIARVLRPGGRVVVLDTDWDT 129 (241)
T ss_pred CCCceEEEEechhhccC----C--HHHHHHHHHHHhcCCcEEEEEecCCCc
Confidence 36799999887765552 2 678999999999999999887655543
No 14
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=96.59 E-value=0.0024 Score=52.05 Aligned_cols=42 Identities=26% Similarity=0.547 Sum_probs=35.1
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEec
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEP 48 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEp 48 (132)
.+.||+|+|-.|. ||+ .++-..++++++++.|+|||+|+|.+
T Consensus 201 ~~~fD~I~crnvl--~yf--~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 201 LGDFDLIFCRNVL--IYF--DEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred cCCCCEEEechhH--HhC--CHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 4579999997665 454 36778899999999999999999975
No 15
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=96.53 E-value=0.0035 Score=48.50 Aligned_cols=41 Identities=20% Similarity=0.338 Sum_probs=31.9
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEE-Eec
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLI-LEP 48 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~li-LEp 48 (132)
+.||+|+|..+.-|+ .++-+..+|+.++++|+|||.++ ++.
T Consensus 94 ~~fD~I~~~~~~~~~----~~~~~~~~l~~i~~~LkpgG~~~~~~~ 135 (197)
T PRK11207 94 GEYDFILSTVVLMFL----EAKTIPGLIANMQRCTKPGGYNLIVAA 135 (197)
T ss_pred CCcCEEEEecchhhC----CHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 469999998764322 36678999999999999999954 453
No 16
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=96.50 E-value=0.0059 Score=46.25 Aligned_cols=45 Identities=20% Similarity=0.461 Sum_probs=36.7
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccchh
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQS 53 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpWks 53 (132)
.+.||+|+|..+.-|+. ....+++.+.+.|+|||.|++....+..
T Consensus 96 ~~~fD~vi~~~~l~~~~------~~~~~l~~~~~~L~~~G~l~~~~~~~~~ 140 (240)
T TIGR02072 96 DSSFDLIVSNLALQWCD------DLSQALSELARVLKPGGLLAFSTFGPGT 140 (240)
T ss_pred CCceeEEEEhhhhhhcc------CHHHHHHHHHHHcCCCcEEEEEeCCccC
Confidence 45799999998877662 3788999999999999999997654444
No 17
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=96.40 E-value=0.0093 Score=37.54 Aligned_cols=40 Identities=28% Similarity=0.437 Sum_probs=35.2
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEe
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILE 47 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLE 47 (132)
.++||+|+|..+.-++ ++-...+++.+.+.|+|||.+++.
T Consensus 64 ~~~~d~i~~~~~~~~~-----~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 64 DESFDVIISDPPLHHL-----VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred CCceEEEEEccceeeh-----hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 4679999998886655 788999999999999999999987
No 18
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.38 E-value=0.0056 Score=48.72 Aligned_cols=86 Identities=23% Similarity=0.353 Sum_probs=51.3
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEe-cccchh-hHhhhc-CChhhhccc---------cc
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILE-PQGFQS-YKKKRK-LTDTIWRNF---------QA 70 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLE-pQpWks-Y~r~~k-l~~~~~~~~---------~~ 70 (132)
...||+|+|..|.-|+. | ...+++.+++.|+|||.|++- +.+... ++..-. ..+.....+ ..
T Consensus 110 ~~~fD~V~~~~vl~~~~----~--~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 183 (255)
T PRK11036 110 ETPVDLILFHAVLEWVA----D--PKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPD 183 (255)
T ss_pred CCCCCEEEehhHHHhhC----C--HHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCC
Confidence 35799999988866552 2 368999999999999999863 333222 111100 000000000 01
Q ss_pred eEEcccchHHHHHhccCCeeEEEcC
Q psy5241 71 IEFFPHHFTEYLLSEVGFTKCETLG 95 (132)
Q Consensus 71 L~lrP~~f~~yLl~~vGF~~~~~l~ 95 (132)
-.+.|+++.++| ++.||+.+...|
T Consensus 184 ~~~~~~~l~~~l-~~aGf~~~~~~g 207 (255)
T PRK11036 184 YPLDPEQVYQWL-EEAGWQIMGKTG 207 (255)
T ss_pred CCCCHHHHHHHH-HHCCCeEeeeee
Confidence 135578888866 457999876544
No 19
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=96.36 E-value=0.01 Score=44.65 Aligned_cols=38 Identities=24% Similarity=0.429 Sum_probs=30.5
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEE
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLIL 46 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liL 46 (132)
.+.||+|+|..+..+ ...+..+++.++..|+|||.|++
T Consensus 104 ~~~~D~i~~~~~~~~------~~~~~~~l~~~~~~L~~gG~l~~ 141 (223)
T TIGR01934 104 DNSFDAVTIAFGLRN------VTDIQKALREMYRVLKPGGRLVI 141 (223)
T ss_pred CCcEEEEEEeeeeCC------cccHHHHHHHHHHHcCCCcEEEE
Confidence 357999998766533 23478999999999999999986
No 20
>PLN02244 tocopherol O-methyltransferase
Probab=96.36 E-value=0.0047 Score=51.90 Aligned_cols=39 Identities=18% Similarity=0.378 Sum_probs=31.4
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEe
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILE 47 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLE 47 (132)
.+.||+|+|.-+..++ .| ...+|+.+++.|+|||.|++-
T Consensus 184 ~~~FD~V~s~~~~~h~----~d--~~~~l~e~~rvLkpGG~lvi~ 222 (340)
T PLN02244 184 DGQFDLVWSMESGEHM----PD--KRKFVQELARVAAPGGRIIIV 222 (340)
T ss_pred CCCccEEEECCchhcc----CC--HHHHHHHHHHHcCCCcEEEEE
Confidence 4689999997665433 34 679999999999999999984
No 21
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=96.33 E-value=0.028 Score=45.87 Aligned_cols=83 Identities=22% Similarity=0.313 Sum_probs=56.0
Q ss_pred ceeEEEEe-------------eeee---eeeccCCcHHH---HHHHHHHHHhhcCCcEEEEecccchhhHhhhcCChhhh
Q psy5241 5 QFDVILCL-------------SVTK---WFHLNWGDSGI---KRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDTIW 65 (132)
Q Consensus 5 ~fDvIlcl-------------SVTK---WIHLN~GD~GL---~~ff~r~~~~L~pGg~liLEpQpWksY~r~~kl~~~~~ 65 (132)
+||+|+|- +|.+ .+-|-.|++|+ +++++.+.+.|+|||.|++|--.+..-.
T Consensus 182 ~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~---------- 251 (284)
T TIGR00536 182 KIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKS---------- 251 (284)
T ss_pred CccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHH----------
Confidence 79999983 2333 24467788885 5888889999999999999996654322
Q ss_pred ccccceEEcccchHHHHHhccCCeeEEEcCCCCCCCCCCCcceEEEEc
Q psy5241 66 RNFQAIEFFPHHFTEYLLSEVGFTKCETLGSPLHPSKGFQRPIKMFTK 113 (132)
Q Consensus 66 ~~~~~L~lrP~~f~~yLl~~vGF~~~~~l~~~~~~~~gf~RpI~lf~K 113 (132)
+.+++....||..++... .-.|.+|-+..+++
T Consensus 252 ------------~~~~~~~~~~~~~~~~~~----D~~g~~R~~~~~~~ 283 (284)
T TIGR00536 252 ------------LKELLRIKFTWYDVENGR----DLNGKERVVLGFYH 283 (284)
T ss_pred ------------HHHHHHhcCCCceeEEec----CCCCCceEEEEEec
Confidence 334444345776665543 14778888876543
No 22
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=96.30 E-value=0.0033 Score=52.76 Aligned_cols=41 Identities=24% Similarity=0.495 Sum_probs=36.1
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEec
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEP 48 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEp 48 (132)
+.||+|+|-.|. ||+ -++--.++++++++.|+|||+|+|-+
T Consensus 222 ~~fD~I~cRNvl--iyF--~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 222 GPFDAIFCRNVM--IYF--DKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred CCcceeeHhhHH--hcC--CHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 579999998875 555 56889999999999999999999987
No 23
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.29 E-value=0.02 Score=45.23 Aligned_cols=79 Identities=25% Similarity=0.417 Sum_probs=51.5
Q ss_pred cceeEEEEe----e------eee-------eeeccCCcHHH---HHHHHHHHHhhcCCcEEEEecccchhhHhhhcCChh
Q psy5241 4 AQFDVILCL----S------VTK-------WFHLNWGDSGI---KRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDT 63 (132)
Q Consensus 4 ~~fDvIlcl----S------VTK-------WIHLN~GD~GL---~~ff~r~~~~L~pGg~liLEpQpWksY~r~~kl~~~ 63 (132)
.+||+|+|- + +.. ...|..|++|+ +.+++.+.+.|+|||.+++|.- |..
T Consensus 174 ~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g-~~~---------- 242 (275)
T PRK09328 174 GRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG-YDQ---------- 242 (275)
T ss_pred CceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC-chH----------
Confidence 579999982 1 111 23466677776 6788888899999999999872 211
Q ss_pred hhccccceEEcccchHHHHHhccCCeeEEEcCCCCCCCCCCCcceE
Q psy5241 64 IWRNFQAIEFFPHHFTEYLLSEVGFTKCETLGSPLHPSKGFQRPIK 109 (132)
Q Consensus 64 ~~~~~~~L~lrP~~f~~yLl~~vGF~~~~~l~~~~~~~~gf~RpI~ 109 (132)
.+.+.+.|. +.||..++... .-.|.+|-+.
T Consensus 243 -----------~~~~~~~l~-~~gf~~v~~~~----d~~~~~r~~~ 272 (275)
T PRK09328 243 -----------GEAVRALLA-AAGFADVETRK----DLAGRDRVVL 272 (275)
T ss_pred -----------HHHHHHHHH-hCCCceeEEec----CCCCCceEEE
Confidence 112556554 56998666643 2467788665
No 24
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=96.25 E-value=0.033 Score=43.83 Aligned_cols=66 Identities=20% Similarity=0.290 Sum_probs=44.8
Q ss_pred CcceeEEEEeeeeeeeeccCCcHH---------HHHHHHHHHHhhcCCcEEEEecccchhhHhhhcCChhhhccccceEE
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSG---------IKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDTIWRNFQAIEF 73 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~G---------L~~ff~r~~~~L~pGg~liLEpQpWksY~r~~kl~~~~~~~~~~L~l 73 (132)
.+.||+|+|-...-| .|+.. +..+++.+++.|+|||.|++- .+
T Consensus 115 ~~~~D~V~S~~~~~~----~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~------------------------~~ 166 (209)
T PRK11188 115 DSKVQVVMSDMAPNM----SGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK------------------------VF 166 (209)
T ss_pred CCCCCEEecCCCCcc----CCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE------------------------Ee
Confidence 357999999544444 23221 357899999999999999992 24
Q ss_pred cccchHHHHHh-ccCCeeEEEcCC
Q psy5241 74 FPHHFTEYLLS-EVGFTKCETLGS 96 (132)
Q Consensus 74 rP~~f~~yLl~-~vGF~~~~~l~~ 96 (132)
+++.+.+++.+ .-.|..++.+.+
T Consensus 167 ~~~~~~~~l~~l~~~f~~v~~~Kp 190 (209)
T PRK11188 167 QGEGFDEYLREIRSLFTKVKVRKP 190 (209)
T ss_pred cCcCHHHHHHHHHhCceEEEEECC
Confidence 45556666544 238888887664
No 25
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=96.22 E-value=0.0078 Score=46.47 Aligned_cols=39 Identities=21% Similarity=0.416 Sum_probs=30.3
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEE
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLIL 46 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liL 46 (132)
+.||+|+|..+..++ .++-+..+++.+++.|+|||+|++
T Consensus 93 ~~fD~I~~~~~~~~~----~~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 93 EDYDFIFSTVVFMFL----QAGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred CCCCEEEEecccccC----CHHHHHHHHHHHHHHhCCCcEEEE
Confidence 469999987775333 235678999999999999998544
No 26
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=96.11 E-value=0.012 Score=48.12 Aligned_cols=88 Identities=18% Similarity=0.314 Sum_probs=55.8
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccchhhHhhhcCChhhhccccceEEccc-chHHH
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDTIWRNFQAIEFFPH-HFTEY 81 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpWksY~r~~kl~~~~~~~~~~L~lrP~-~f~~y 81 (132)
..+||+|-|= |+=.+==|+-|..||+|+.+.|+|||++|+---- .......++.=++=--|++ .|.+
T Consensus 120 ~~~YDlIW~Q----W~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~-------~~~~~~~~D~~DsSvTRs~~~~~~- 187 (218)
T PF05891_consen 120 EGKYDLIWIQ----WCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENV-------SSSGFDEFDEEDSSVTRSDEHFRE- 187 (218)
T ss_dssp TT-EEEEEEE----S-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEE-------ESSSEEEEETTTTEEEEEHHHHHH-
T ss_pred CCcEeEEEeh----HhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecC-------CCCCCcccCCccCeeecCHHHHHH-
Confidence 4689999874 6655556999999999999999999999985421 1111123344455556776 5555
Q ss_pred HHhccCCeeEEEcCCCCCCCCCCCcc
Q psy5241 82 LLSEVGFTKCETLGSPLHPSKGFQRP 107 (132)
Q Consensus 82 Ll~~vGF~~~~~l~~~~~~~~gf~Rp 107 (132)
|-++.|++.+..-- .+||.+.
T Consensus 188 lF~~AGl~~v~~~~-----Q~~fP~~ 208 (218)
T PF05891_consen 188 LFKQAGLRLVKEEK-----QKGFPKE 208 (218)
T ss_dssp HHHHCT-EEEEEEE------TT--TT
T ss_pred HHHHcCCEEEEecc-----ccCCCcc
Confidence 56678999887633 5788764
No 27
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=96.10 E-value=0.0079 Score=45.17 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=30.4
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEE
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLIL 46 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liL 46 (132)
.+.||+|+|.-+.-|+. -...+|+.+++.|+|||.|++
T Consensus 42 ~~~fD~v~~~~~l~~~~------d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 42 DCEFDAVTMGYGLRNVV------DRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred CCCeeEEEecchhhcCC------CHHHHHHHHHHHcCcCeEEEE
Confidence 45799999977665552 367999999999999999853
No 28
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=95.95 E-value=0.021 Score=46.61 Aligned_cols=44 Identities=14% Similarity=0.230 Sum_probs=33.8
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccc
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGF 51 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpW 51 (132)
+.+|+|++..| ..+++|+-..++|+++++.|+|||.|++.-.-|
T Consensus 214 ~~~D~v~~~~~----lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 257 (306)
T TIGR02716 214 PEADAVLFCRI----LYSANEQLSTIMCKKAFDAMRSGGRLLILDMVI 257 (306)
T ss_pred CCCCEEEeEhh----hhcCChHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 35798876543 346788888999999999999999997764333
No 29
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=95.93 E-value=0.0087 Score=47.22 Aligned_cols=38 Identities=29% Similarity=0.582 Sum_probs=32.6
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEe
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILE 47 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLE 47 (132)
..||+|+|..+.-|+. | ..++|+++++.|+|||.|+++
T Consensus 92 ~~fD~v~~~~~l~~~~----d--~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 92 QALDLIFANASLQWLP----D--HLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred CCccEEEEccChhhCC----C--HHHHHHHHHHhcCCCcEEEEE
Confidence 4799999998877763 3 578999999999999999995
No 30
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=95.88 E-value=0.023 Score=48.96 Aligned_cols=87 Identities=18% Similarity=0.392 Sum_probs=59.7
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccchhhHhhhcCChhhhccccceEEccc--chHHH
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDTIWRNFQAIEFFPH--HFTEY 81 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpWksY~r~~kl~~~~~~~~~~L~lrP~--~f~~y 81 (132)
..||||+|+-|. -|+-.= ...++.+.+.|+|||.||||-.-=..=....-..+..+..-+++=|-|. ....+
T Consensus 181 ~~FDtVF~MGVL--YHrr~P----l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~w 254 (315)
T PF08003_consen 181 GAFDTVFSMGVL--YHRRSP----LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNW 254 (315)
T ss_pred CCcCEEEEeeeh--hccCCH----HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHH
Confidence 579999999996 455443 3456677899999999999986443322222223334445566777775 67776
Q ss_pred HHhccCCeeEEEcCCC
Q psy5241 82 LLSEVGFTKCETLGSP 97 (132)
Q Consensus 82 Ll~~vGF~~~~~l~~~ 97 (132)
| +.+||+-++.+...
T Consensus 255 l-~r~gF~~v~~v~~~ 269 (315)
T PF08003_consen 255 L-ERAGFKDVRCVDVS 269 (315)
T ss_pred H-HHcCCceEEEecCc
Confidence 6 56899999988755
No 31
>PRK00811 spermidine synthase; Provisional
Probab=95.84 E-value=0.015 Score=47.94 Aligned_cols=83 Identities=18% Similarity=0.295 Sum_probs=51.4
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHH--HHHHHHHHHhhcCCcEEEEecc-cchhhHhhhcCChhhhccccceEEcccchH
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGI--KRVFMRMYAQLREGGVLILEPQ-GFQSYKKKRKLTDTIWRNFQAIEFFPHHFT 79 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL--~~ff~r~~~~L~pGg~liLEpQ-pWksY~r~~kl~~~~~~~~~~L~lrP~~f~ 79 (132)
.++||+|++-+..-| .-...| ..||+.+.+.|+|||+|++..+ ||-.=...++.-.++.+.|.....-....+
T Consensus 148 ~~~yDvIi~D~~dp~----~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vp 223 (283)
T PRK00811 148 ENSFDVIIVDSTDPV----GPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFPIVRPYQAAIP 223 (283)
T ss_pred CCcccEEEECCCCCC----CchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCCCEEEEEeECC
Confidence 468999998654332 112344 7899999999999999998643 232111233444555666666666555555
Q ss_pred HHHHhccCCe
Q psy5241 80 EYLLSEVGFT 89 (132)
Q Consensus 80 ~yLl~~vGF~ 89 (132)
.|=-...||.
T Consensus 224 ~~~~~~w~f~ 233 (283)
T PRK00811 224 TYPSGLWSFT 233 (283)
T ss_pred cccCchheeE
Confidence 5433445663
No 32
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=95.82 E-value=0.051 Score=46.64 Aligned_cols=80 Identities=20% Similarity=0.395 Sum_probs=45.6
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEE-ecccchhhHhhhcCChhhhccccceEEcccchHHH
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLIL-EPQGFQSYKKKRKLTDTIWRNFQAIEFFPHHFTEY 81 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liL-EpQpWksY~r~~kl~~~~~~~~~~L~lrP~~f~~y 81 (132)
.+.||+|+|..+.-+ +.|. .++|+++++.|+|||.|++ ++ ....+...+... .....+ ...+++.++
T Consensus 176 ~~sFDvVIs~~~L~~----~~d~--~~~L~e~~rvLkPGG~LvIi~~-~~p~~~~~r~~~-~~~~~~----~t~eEl~~l 243 (340)
T PLN02490 176 TDYADRYVSAGSIEY----WPDP--QRGIKEAYRVLKIGGKACLIGP-VHPTFWLSRFFA-DVWMLF----PKEEEYIEW 243 (340)
T ss_pred CCceeEEEEcChhhh----CCCH--HHHHHHHHHhcCCCcEEEEEEe-cCcchhHHHHhh-hhhccC----CCHHHHHHH
Confidence 357999998655322 2233 5789999999999999876 43 211211111110 111011 124567775
Q ss_pred HHhccCCeeEEEcC
Q psy5241 82 LLSEVGFTKCETLG 95 (132)
Q Consensus 82 Ll~~vGF~~~~~l~ 95 (132)
| ++.||+.++.-.
T Consensus 244 L-~~aGF~~V~i~~ 256 (340)
T PLN02490 244 F-TKAGFKDVKLKR 256 (340)
T ss_pred H-HHCCCeEEEEEE
Confidence 5 457999877543
No 33
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=95.81 E-value=0.0074 Score=46.41 Aligned_cols=38 Identities=24% Similarity=0.532 Sum_probs=30.9
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEe
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILE 47 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLE 47 (132)
+.||+|++..+.-++ +| ...+|+.+++.|+|||.|++-
T Consensus 66 ~~fD~I~~~~~l~~~----~~--~~~~l~~~~~~LkpgG~l~i~ 103 (224)
T smart00828 66 DTYDLVFGFEVIHHI----KD--KMDLFSNISRHLKDGGHLVLA 103 (224)
T ss_pred CCCCEeehHHHHHhC----CC--HHHHHHHHHHHcCCCCEEEEE
Confidence 469999987666544 33 689999999999999999974
No 34
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=95.73 E-value=0.031 Score=43.26 Aligned_cols=79 Identities=25% Similarity=0.426 Sum_probs=50.3
Q ss_pred CcceeEEEE---ee-----------ee---eeeeccCCcHHH---HHHHHHHHHhhcCCcEEEEecccchhhHhhhcCCh
Q psy5241 3 QAQFDVILC---LS-----------VT---KWFHLNWGDSGI---KRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTD 62 (132)
Q Consensus 3 ~~~fDvIlc---lS-----------VT---KWIHLN~GD~GL---~~ff~r~~~~L~pGg~liLEpQpWksY~r~~kl~~ 62 (132)
.++||+|+| ++ +. ....+..|++|+ ..+++.+.+.|+|||.+++|-. | ..
T Consensus 152 ~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~-~---~~------ 221 (251)
T TIGR03534 152 GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG-Y---DQ------ 221 (251)
T ss_pred CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC-c---cH------
Confidence 467999998 11 11 123344566666 5789999999999999999752 1 11
Q ss_pred hhhccccceEEcccchHHHHHhccCCeeEEEcCCCCCCCCCCCcce
Q psy5241 63 TIWRNFQAIEFFPHHFTEYLLSEVGFTKCETLGSPLHPSKGFQRPI 108 (132)
Q Consensus 63 ~~~~~~~~L~lrP~~f~~yLl~~vGF~~~~~l~~~~~~~~gf~RpI 108 (132)
.+.+.++|. +.||+.++.... -.|..|.+
T Consensus 222 ------------~~~~~~~l~-~~gf~~v~~~~d----~~~~~r~~ 250 (251)
T TIGR03534 222 ------------GEAVRALFE-AAGFADVETRKD----LAGKDRVV 250 (251)
T ss_pred ------------HHHHHHHHH-hCCCCceEEEeC----CCCCcCee
Confidence 134667665 469987776542 34555544
No 35
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=95.65 E-value=0.018 Score=47.02 Aligned_cols=74 Identities=16% Similarity=0.268 Sum_probs=49.0
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEE-EecccchhhHhhhcCChhhhccccceEEcccchHHHH
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLI-LEPQGFQSYKKKRKLTDTIWRNFQAIEFFPHHFTEYL 82 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~li-LEpQpWksY~r~~kl~~~~~~~~~~L~lrP~~f~~yL 82 (132)
++||+|+|..|..++ + ++-+..+++.+.+.|+|||+++ +++-...-|... .. -...++++.+.+++
T Consensus 183 ~~fD~I~~~~vl~~l--~--~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~--------~p-~~~~~~~~el~~~~ 249 (287)
T PRK12335 183 EEYDFILSTVVLMFL--N--RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCP--------MP-FSFTFKEGELKDYY 249 (287)
T ss_pred CCccEEEEcchhhhC--C--HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCC--------CC-CCcccCHHHHHHHh
Confidence 579999998886543 2 5678999999999999999954 455433333210 11 12346677788877
Q ss_pred HhccCCeeEEE
Q psy5241 83 LSEVGFTKCET 93 (132)
Q Consensus 83 l~~vGF~~~~~ 93 (132)
. +|+....
T Consensus 250 ~---~~~i~~~ 257 (287)
T PRK12335 250 Q---DWEIVKY 257 (287)
T ss_pred C---CCEEEEE
Confidence 4 3666543
No 36
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=95.64 E-value=0.015 Score=48.04 Aligned_cols=41 Identities=29% Similarity=0.574 Sum_probs=33.9
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEec
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEP 48 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEp 48 (132)
.+||.|. ||=|.=|+ |++.+.+||++++++|+|||.++|+-
T Consensus 126 ~~fD~Iv--Si~~~Ehv--g~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 126 GKFDRIV--SIEMFEHV--GRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp -S-SEEE--EESEGGGT--CGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred CCCCEEE--EEechhhc--ChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 3788865 66777787 78999999999999999999999864
No 37
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=95.62 E-value=0.019 Score=44.93 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=32.2
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccch
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQ 52 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpWk 52 (132)
+.||+|+|.. ...+..+++.++..|+|||.|++.-.+|.
T Consensus 111 ~~fDlV~~~~----------~~~~~~~l~~~~~~LkpGG~lv~~~~~~~ 149 (187)
T PRK00107 111 EKFDVVTSRA----------VASLSDLVELCLPLLKPGGRFLALKGRDP 149 (187)
T ss_pred CCccEEEEcc----------ccCHHHHHHHHHHhcCCCeEEEEEeCCCh
Confidence 4799999853 24578999999999999999999866653
No 38
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=95.53 E-value=0.037 Score=42.89 Aligned_cols=39 Identities=18% Similarity=0.412 Sum_probs=31.1
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEec
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEP 48 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEp 48 (132)
..||+|+|..+.-++. ....+++.+.+.|+|||.+++..
T Consensus 113 ~~fD~Ii~~~~l~~~~------~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 113 GQFDVVTCMEMLEHVP------DPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred CCccEEEEhhHhhccC------CHHHHHHHHHHHcCCCcEEEEEe
Confidence 5799999976654432 35788999999999999999873
No 39
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=95.51 E-value=0.017 Score=49.77 Aligned_cols=40 Identities=28% Similarity=0.484 Sum_probs=33.7
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEe
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILE 47 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLE 47 (132)
+.||.|+| +.+.-|+ |+.-+..+|+.+++.|+|||.+++.
T Consensus 227 ~~fD~Ivs--~~~~ehv--g~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 227 GQFDRIVS--VGMFEHV--GPKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred CCCCEEEE--eCchhhC--ChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 57999865 5566665 6788899999999999999999996
No 40
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=95.50 E-value=0.028 Score=43.25 Aligned_cols=40 Identities=18% Similarity=0.459 Sum_probs=32.7
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccch
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQ 52 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpWk 52 (132)
+.||.|++ +.|.+.+..+++.+++.|+|||.++++.....
T Consensus 110 ~~~D~V~~---------~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 149 (198)
T PRK00377 110 EKFDRIFI---------GGGSEKLKEIISASWEIIKKGGRIVIDAILLE 149 (198)
T ss_pred CCCCEEEE---------CCCcccHHHHHHHHHHHcCCCcEEEEEeecHH
Confidence 56898876 34667889999999999999999999775443
No 41
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=95.50 E-value=0.011 Score=40.30 Aligned_cols=36 Identities=25% Similarity=0.521 Sum_probs=29.7
Q ss_pred CcceeEEEE-eeeeeeeeccCCcHHHHHHHHHHHHhhcCCc
Q psy5241 3 QAQFDVILC-LSVTKWFHLNWGDSGIKRVFMRMYAQLREGG 42 (132)
Q Consensus 3 ~~~fDvIlc-lSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg 42 (132)
.++||+|+| .++. |. ..++-+.++|+++++.|+|||
T Consensus 65 ~~~~D~v~~~~~~~---~~-~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 65 DGKFDLVVCSGLSL---HH-LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSSEEEEEE-TTGG---GG-SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCeeEEEEcCCcc---CC-CCHHHHHHHHHHHHHHhCCCC
Confidence 458999999 3432 33 678999999999999999998
No 42
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=95.46 E-value=0.011 Score=46.94 Aligned_cols=44 Identities=32% Similarity=0.579 Sum_probs=32.4
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEeccc
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQG 50 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQp 50 (132)
...||+|+|=-|..+. -++--+++++++++.|+|||+|+|-+..
T Consensus 134 ~~~fD~I~CRNVlIYF----~~~~~~~vl~~l~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 134 FGRFDLIFCRNVLIYF----DPETQQRVLRRLHRSLKPGGYLFLGHSE 177 (196)
T ss_dssp ---EEEEEE-SSGGGS-----HHHHHHHHHHHGGGEEEEEEEEE-TT-
T ss_pred cCCccEEEecCEEEEe----CHHHHHHHHHHHHHHcCCCCEEEEecCc
Confidence 3679999999997543 3566789999999999999999998743
No 43
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=95.35 E-value=0.048 Score=41.77 Aligned_cols=84 Identities=15% Similarity=0.221 Sum_probs=46.5
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccchhhHhhhcCChhhhcc---ccceEEcccchHH
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDTIWRN---FQAIEFFPHHFTE 80 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpWksY~r~~kl~~~~~~~---~~~L~lrP~~f~~ 80 (132)
+.||+|+|+.+. +| +.|+.+...++++++.+.+|+++.+.+ ....+...+.+......+ -....+.++.+.+
T Consensus 126 ~~fD~v~~~~~l--~~--~~~~~~~~~l~~l~~~~~~~~~i~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 200 (230)
T PRK07580 126 GRFDTVVCLDVL--IH--YPQEDAARMLAHLASLTRGSLIFTFAP-YTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRR 200 (230)
T ss_pred CCcCEEEEcchh--hc--CCHHHHHHHHHHHHhhcCCeEEEEECC-ccHHHHHHHHhccccCCccCCCCccccCHHHHHH
Confidence 569999998875 34 467889999999998775444433322 222222111111111001 0111223456777
Q ss_pred HHHhccCCeeEEE
Q psy5241 81 YLLSEVGFTKCET 93 (132)
Q Consensus 81 yLl~~vGF~~~~~ 93 (132)
.|. ..||+.++.
T Consensus 201 ~l~-~~Gf~~~~~ 212 (230)
T PRK07580 201 ALA-AAGFKVVRT 212 (230)
T ss_pred HHH-HCCCceEee
Confidence 554 679997775
No 44
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=95.21 E-value=0.031 Score=45.22 Aligned_cols=38 Identities=21% Similarity=0.244 Sum_probs=30.1
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEE
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLIL 46 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liL 46 (132)
.+.||+|+|.-+..+++ | ...+++.+++.|+|||.|++
T Consensus 143 ~~sfD~V~~~~~l~~~~----d--~~~~l~ei~rvLkpGG~l~i 180 (261)
T PLN02233 143 DCYFDAITMGYGLRNVV----D--RLKAMQEMYRVLKPGSRVSI 180 (261)
T ss_pred CCCEeEEEEecccccCC----C--HHHHHHHHHHHcCcCcEEEE
Confidence 45799999876655443 3 68899999999999999865
No 45
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=94.99 E-value=0.037 Score=47.77 Aligned_cols=39 Identities=23% Similarity=0.451 Sum_probs=32.1
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEec
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEP 48 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEp 48 (132)
+.||+|+|..+.-|+. | ..++|+.+++.|+|||.|++.-
T Consensus 331 ~~fD~I~s~~~l~h~~----d--~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 331 NSFDVIYSRDTILHIQ----D--KPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred CCEEEEEECCcccccC----C--HHHHHHHHHHHcCCCeEEEEEE
Confidence 5799999987765542 3 5789999999999999999873
No 46
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=94.92 E-value=0.11 Score=43.93 Aligned_cols=82 Identities=13% Similarity=0.275 Sum_probs=50.3
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccchhhHhhhcCChhhhccccc---eE-EcccchH
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDTIWRNFQA---IE-FFPHHFT 79 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpWksY~r~~kl~~~~~~~~~~---L~-lrP~~f~ 79 (132)
+.||+|+|..+. +| ..|+.+..+++.+.. +.+||++|.-....-.|.-.++..+ .+..+.. -- ..++++.
T Consensus 211 ~~fD~Vv~~~vL--~H--~p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~-~~~g~~~~~r~y~~s~eel~ 284 (315)
T PLN02585 211 GKYDTVTCLDVL--IH--YPQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGE-LFPGPSKATRAYLHAEADVE 284 (315)
T ss_pred CCcCEEEEcCEE--Ee--cCHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHh-hcCCCCcCceeeeCCHHHHH
Confidence 579999998775 45 577888888888885 5677777765433333443333322 2222211 11 2467888
Q ss_pred HHHHhccCCeeEE
Q psy5241 80 EYLLSEVGFTKCE 92 (132)
Q Consensus 80 ~yLl~~vGF~~~~ 92 (132)
+.| ++.||+...
T Consensus 285 ~lL-~~AGf~v~~ 296 (315)
T PLN02585 285 RAL-KKAGWKVAR 296 (315)
T ss_pred HHH-HHCCCEEEE
Confidence 854 567998654
No 47
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=94.84 E-value=0.042 Score=43.85 Aligned_cols=39 Identities=28% Similarity=0.473 Sum_probs=30.1
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEe
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILE 47 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLE 47 (132)
...||+|++..|. |+ . .....+|+.+++.|+|||.|++-
T Consensus 144 ~~~fD~Vi~~~v~---~~-~--~d~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 144 DNSVDVIISNCVI---NL-S--PDKERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred CCceeEEEEcCcc---cC-C--CCHHHHHHHHHHHcCCCcEEEEE
Confidence 3579999988763 22 1 23568999999999999999983
No 48
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=94.77 E-value=0.037 Score=46.29 Aligned_cols=30 Identities=37% Similarity=0.610 Sum_probs=26.1
Q ss_pred ccCCcHHH---HHHHHHHHHhhcCCcEEEEecc
Q psy5241 20 LNWGDSGI---KRVFMRMYAQLREGGVLILEPQ 49 (132)
Q Consensus 20 LN~GD~GL---~~ff~r~~~~L~pGg~liLEpQ 49 (132)
|..|++|+ +++++.+.+.|+|||.+++|--
T Consensus 232 L~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 232 LAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred eeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 56788886 6899999999999999999974
No 49
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=94.75 E-value=0.04 Score=43.37 Aligned_cols=39 Identities=23% Similarity=0.521 Sum_probs=31.4
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEe
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILE 47 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLE 47 (132)
...||+|+|..+.-|+. -+..+|+++++.|+|||.|++-
T Consensus 101 ~~~fD~V~s~~~l~~~~------d~~~~l~~~~~~Lk~gG~l~~~ 139 (251)
T PRK10258 101 TATFDLAWSNLAVQWCG------NLSTALRELYRVVRPGGVVAFT 139 (251)
T ss_pred CCcEEEEEECchhhhcC------CHHHHHHHHHHHcCCCeEEEEE
Confidence 35799999877654432 3679999999999999999975
No 50
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=94.72 E-value=0.048 Score=43.61 Aligned_cols=34 Identities=26% Similarity=0.289 Sum_probs=29.1
Q ss_pred ceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEe
Q psy5241 5 QFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILE 47 (132)
Q Consensus 5 ~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLE 47 (132)
.||+|+|- ..-+.+..++..+++.|+|||.||+.
T Consensus 179 ~fD~Vvan---------i~~~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 179 KADVIVAN---------ILANPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred CcCEEEEc---------CcHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 69999883 34567889999999999999999985
No 51
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=94.72 E-value=0.035 Score=47.94 Aligned_cols=43 Identities=19% Similarity=0.368 Sum_probs=34.8
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecc
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQ 49 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQ 49 (132)
.+.||+|+|-.+..|+ .|+-+..+++++++.|+|||++++.-.
T Consensus 101 ~~~fD~I~~~~~l~~l----~~~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 101 DGSVDLIFSNWLLMYL----SDKEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred CCCEEEEehhhhHHhC----CHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 3579999997664433 577799999999999999999998643
No 52
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=94.60 E-value=0.059 Score=43.74 Aligned_cols=85 Identities=18% Similarity=0.259 Sum_probs=50.5
Q ss_pred CcceeEEEEeeeeeeeeccCCcHH--HHHHHHHHHHhhcCCcEEEEecc-cchhhHhhhcCChhhhccccceEEcccchH
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSG--IKRVFMRMYAQLREGGVLILEPQ-GFQSYKKKRKLTDTIWRNFQAIEFFPHHFT 79 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~G--L~~ff~r~~~~L~pGg~liLEpQ-pWksY~r~~kl~~~~~~~~~~L~lrP~~f~ 79 (132)
.++||+|++-+..-+ ..... -..||+.+.+.|+|||++++... ||-.=.-.+.+-.++.+.|.....--..++
T Consensus 143 ~~~yDvIi~D~~~~~----~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~v~~~~~~vp 218 (270)
T TIGR00417 143 ENTFDVIIVDSTDPV----GPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPITEYYTANIP 218 (270)
T ss_pred CCCccEEEEeCCCCC----CcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCCeEEEEEEcC
Confidence 358999997543211 11222 47899999999999999999754 443212223333445555666655544455
Q ss_pred HHHHhccCCeeE
Q psy5241 80 EYLLSEVGFTKC 91 (132)
Q Consensus 80 ~yLl~~vGF~~~ 91 (132)
.|-....||...
T Consensus 219 ~~~~g~~~~~~a 230 (270)
T TIGR00417 219 TYPSGLWTFTIG 230 (270)
T ss_pred ccccchhEEEEE
Confidence 554344566544
No 53
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=94.57 E-value=0.029 Score=46.72 Aligned_cols=86 Identities=20% Similarity=0.292 Sum_probs=56.6
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEec--ccchhhHhhhcCCh-------hhhccccceEEc
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEP--QGFQSYKKKRKLTD-------TIWRNFQAIEFF 74 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEp--QpWksY~r~~kl~~-------~~~~~~~~L~lr 74 (132)
++||||+|+=|. .|+-.=++ |.+.+.+++||||++++-- +.|++|--.--..+ .--.. -+.-+|
T Consensus 123 ~~FDvV~cmEVl--EHv~dp~~----~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~-~~k~ir 195 (243)
T COG2227 123 GQFDVVTCMEVL--EHVPDPES----FLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHD-YRKFIK 195 (243)
T ss_pred CCccEEEEhhHH--HccCCHHH----HHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchh-HHHhcC
Confidence 689999999876 67766554 8999999999999999863 67888873211111 10011 123367
Q ss_pred ccchHHHHHhccCCeeEEEcCCC
Q psy5241 75 PHHFTEYLLSEVGFTKCETLGSP 97 (132)
Q Consensus 75 P~~f~~yLl~~vGF~~~~~l~~~ 97 (132)
|+.....+.+ -|+..-...|..
T Consensus 196 p~El~~~~~~-~~~~~~~~~g~~ 217 (243)
T COG2227 196 PAELIRWLLG-ANLKIIDRKGLT 217 (243)
T ss_pred HHHHHHhccc-CCceEEeecceE
Confidence 8777776665 467665555533
No 54
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=94.55 E-value=0.095 Score=40.50 Aligned_cols=82 Identities=13% Similarity=0.352 Sum_probs=49.1
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccchhhHh-hhcCChhhhcc---ccceE-Ecccch
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKK-KRKLTDTIWRN---FQAIE-FFPHHF 78 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpWksY~r-~~kl~~~~~~~---~~~L~-lrP~~f 78 (132)
+.||+|+|..+. .|+ .++++..+++++++.+++|+++..-|. ..+.. .+.+.. .+.. ...+. +.|+.+
T Consensus 118 ~~fD~ii~~~~l--~~~--~~~~~~~~l~~i~~~~~~~~~i~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 190 (219)
T TIGR02021 118 GEFDIVVCMDVL--IHY--PASDMAKALGHLASLTKERVIFTFAPK--TAWLAFLKMIGE-LFPGSSRATSAYLHPMTDL 190 (219)
T ss_pred CCcCEEEEhhHH--HhC--CHHHHHHHHHHHHHHhCCCEEEEECCC--chHHHHHHHHHh-hCcCcccccceEEecHHHH
Confidence 579999997775 443 457899999999999887766665443 22221 111111 1111 11223 335788
Q ss_pred HHHHHhccCCeeEEE
Q psy5241 79 TEYLLSEVGFTKCET 93 (132)
Q Consensus 79 ~~yLl~~vGF~~~~~ 93 (132)
.++| ++.||+....
T Consensus 191 ~~~l-~~~Gf~v~~~ 204 (219)
T TIGR02021 191 ERAL-GELGWKIVRE 204 (219)
T ss_pred HHHH-HHcCceeeee
Confidence 8866 5679987654
No 55
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=94.53 E-value=0.039 Score=40.25 Aligned_cols=42 Identities=29% Similarity=0.566 Sum_probs=33.5
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccc
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGF 51 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpW 51 (132)
+.||+|+|.++..|++ | ...+|+++.+.|++||++++..-.|
T Consensus 72 ~~~D~I~~~~~l~~~~----~--~~~~l~~~~~~lk~~G~~i~~~~~~ 113 (152)
T PF13847_consen 72 EKFDIIISNGVLHHFP----D--PEKVLKNIIRLLKPGGILIISDPNH 113 (152)
T ss_dssp TTEEEEEEESTGGGTS----H--HHHHHHHHHHHEEEEEEEEEEEEEH
T ss_pred CCeeEEEEcCchhhcc----C--HHHHHHHHHHHcCCCcEEEEEECCh
Confidence 6899999999983333 2 2588999999999999999776663
No 56
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=94.50 E-value=0.57 Score=38.59 Aligned_cols=88 Identities=24% Similarity=0.358 Sum_probs=58.8
Q ss_pred CCcceeEEEEeeeeeeeeccCCcH-HHHHHHHHHHHhhcCCcE------EEEecccchhhHhhhcCChhhhccccceEEc
Q psy5241 2 EQAQFDVILCLSVTKWFHLNWGDS-GIKRVFMRMYAQLREGGV------LILEPQGFQSYKKKRKLTDTIWRNFQAIEFF 74 (132)
Q Consensus 2 ~~~~fDvIlclSVTKWIHLN~GD~-GL~~ff~r~~~~L~pGg~------liLEpQpWksY~r~~kl~~~~~~~~~~L~lr 74 (132)
+.++||||.|-=|.=+| .|. +=-.+++|+++.|+|+|. ||+=|-| |=.+.|-++.+-
T Consensus 101 ~~e~FdvIs~SLVLNfV----P~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~--Cv~NSRy~~~~~---------- 164 (219)
T PF11968_consen 101 ESEKFDVISLSLVLNFV----PDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP--CVTNSRYMTEER---------- 164 (219)
T ss_pred cccceeEEEEEEEEeeC----CCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCch--HhhcccccCHHH----------
Confidence 45789999886664443 222 233689999999999887 5565555 777777777653
Q ss_pred ccchHHHHHhccCCeeEEEcCCCCCCCCCCCcceEEEEcCCC
Q psy5241 75 PHHFTEYLLSEVGFTKCETLGSPLHPSKGFQRPIKMFTKGSK 116 (132)
Q Consensus 75 P~~f~~yLl~~vGF~~~~~l~~~~~~~~gf~RpI~lf~K~~~ 116 (132)
|.+ +++.+||..++.- +.=+=--++|+|...
T Consensus 165 ---l~~-im~~LGf~~~~~~-------~~~Kl~y~l~r~~~~ 195 (219)
T PF11968_consen 165 ---LRE-IMESLGFTRVKYK-------KSKKLAYWLFRKSGK 195 (219)
T ss_pred ---HHH-HHHhCCcEEEEEE-------ecCeEEEEEEeecCC
Confidence 555 5567999988762 222333567777665
No 57
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=94.46 E-value=0.05 Score=42.70 Aligned_cols=40 Identities=15% Similarity=0.323 Sum_probs=31.2
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEe
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILE 47 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLE 47 (132)
+.+|+|+|..+.-|++ ++....+++.+++.|+|||.|++-
T Consensus 121 ~~~d~v~~~~~l~~~~----~~~~~~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 121 KNASMVILNFTLQFLP----PEDRIALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred CCCCEEeeecchhhCC----HHHHHHHHHHHHHhcCCCeEEEEe
Confidence 4589888877644332 445789999999999999999984
No 58
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=94.44 E-value=0.079 Score=39.95 Aligned_cols=48 Identities=21% Similarity=0.362 Sum_probs=34.1
Q ss_pred CcceeEEEEeeeeeeeeccCCcH----HHHHHHHHHHHhhcCCcEEEEecccchhhH
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDS----GIKRVFMRMYAQLREGGVLILEPQGFQSYK 55 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~----GL~~ff~r~~~~L~pGg~liLEpQpWksY~ 55 (132)
..+||+|+|-== ++.|.+ -+++|++...+.|+|||.|++.-+.=..|+
T Consensus 96 ~~~fD~Iv~NPP-----~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~ 147 (170)
T PF05175_consen 96 DGKFDLIVSNPP-----FHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYE 147 (170)
T ss_dssp TTCEEEEEE--------SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHH
T ss_pred ccceeEEEEccc-----hhcccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChH
Confidence 468999998532 444444 789999999999999999977655433444
No 59
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=94.25 E-value=0.073 Score=40.27 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=28.2
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEec
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEP 48 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEp 48 (132)
.+||+|++- .....+..+++.+++.|+|||.|+++-
T Consensus 96 ~~~D~v~~~---------~~~~~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 96 GKADAIFIG---------GSGGNLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred cCCCEEEEC---------CCccCHHHHHHHHHHhcCCCeEEEEEE
Confidence 468998863 222347889999999999999999953
No 60
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=94.15 E-value=0.083 Score=40.14 Aligned_cols=38 Identities=24% Similarity=0.437 Sum_probs=29.4
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEE
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLIL 46 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liL 46 (132)
.+.||+|+|..+..++ +-+..+++.+.+.|+|||.+++
T Consensus 119 ~~~~D~I~~~~~l~~~------~~~~~~l~~~~~~L~~gG~li~ 156 (239)
T PRK00216 119 DNSFDAVTIAFGLRNV------PDIDKALREMYRVLKPGGRLVI 156 (239)
T ss_pred CCCccEEEEecccccC------CCHHHHHHHHHHhccCCcEEEE
Confidence 4579999986654332 2378899999999999998875
No 61
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=94.02 E-value=0.082 Score=39.74 Aligned_cols=43 Identities=35% Similarity=0.545 Sum_probs=30.8
Q ss_pred cceeEEEEeeeeeeeecc--------------CCcHH---HHHHHHHHHHhhcCCcEEEEec
Q psy5241 4 AQFDVILCLSVTKWFHLN--------------WGDSG---IKRVFMRMYAQLREGGVLILEP 48 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN--------------~GD~G---L~~ff~r~~~~L~pGg~liLEp 48 (132)
++||+|+|-. =|+|+. .|++| +.++++.+.+.|+|||.+++.-
T Consensus 81 ~~fD~Vi~n~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 81 GKFDVILFNP--PYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred CcccEEEECC--CCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 4799998653 233332 13333 7899999999999999998854
No 62
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=93.86 E-value=0.12 Score=43.05 Aligned_cols=80 Identities=11% Similarity=0.048 Sum_probs=50.2
Q ss_pred cceeEEEE---eeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccchhhHhhhcCChhhhccccceEEcccchHH
Q psy5241 4 AQFDVILC---LSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDTIWRNFQAIEFFPHHFTE 80 (132)
Q Consensus 4 ~~fDvIlc---lSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpWksY~r~~kl~~~~~~~~~~L~lrP~~f~~ 80 (132)
..||+|+| +...-.++....++-...+++.+++.|+|||.+++.-.+.. .+.+
T Consensus 247 ~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~------------------------~~~~ 302 (329)
T TIGR01177 247 ESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI------------------------DLES 302 (329)
T ss_pred CCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC------------------------CHHH
Confidence 57999999 33333332222334468999999999999998887653321 1223
Q ss_pred HHHhccCCeeEEEcCCCCCCCCCCCcceEEE
Q psy5241 81 YLLSEVGFTKCETLGSPLHPSKGFQRPIKMF 111 (132)
Q Consensus 81 yLl~~vGF~~~~~l~~~~~~~~gf~RpI~lf 111 (132)
++++.|| ..+....-. .+++-|-|+|+
T Consensus 303 -~~~~~g~-i~~~~~~~~--h~sl~r~i~v~ 329 (329)
T TIGR01177 303 -LAEDAFR-VVKRFEVRV--HRSLTRHIYVA 329 (329)
T ss_pred -HHhhcCc-chheeeeee--ecceEEEEEeC
Confidence 3456788 555443222 36788888875
No 63
>PLN02366 spermidine synthase
Probab=93.83 E-value=0.074 Score=44.89 Aligned_cols=85 Identities=19% Similarity=0.275 Sum_probs=50.9
Q ss_pred CcceeEEEEeeeeeeeeccCCcHH--HHHHHHHHHHhhcCCcEEEEecc-cchhhHhhhcCChhhhccc-cceEEcccch
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSG--IKRVFMRMYAQLREGGVLILEPQ-GFQSYKKKRKLTDTIWRNF-QAIEFFPHHF 78 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~G--L~~ff~r~~~~L~pGg~liLEpQ-pWksY~r~~kl~~~~~~~~-~~L~lrP~~f 78 (132)
.++||+|++-+-.=+ .-... =..||+.+.+.|+|||+|++... +|..-...+..-.++.+.| .....--..+
T Consensus 163 ~~~yDvIi~D~~dp~----~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F~~~v~~~~~~v 238 (308)
T PLN02366 163 EGTYDAIIVDSSDPV----GPAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETFKGSVNYAWTTV 238 (308)
T ss_pred CCCCCEEEEcCCCCC----CchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHCCCceeEEEecC
Confidence 357999998542211 11222 36799999999999999987554 5655443444455566666 3444433344
Q ss_pred HHHHHhccCCeeE
Q psy5241 79 TEYLLSEVGFTKC 91 (132)
Q Consensus 79 ~~yLl~~vGF~~~ 91 (132)
+.|--...||...
T Consensus 239 Psy~~g~w~f~~a 251 (308)
T PLN02366 239 PTYPSGVIGFVLC 251 (308)
T ss_pred CCcCCCceEEEEE
Confidence 4454345667543
No 64
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=93.72 E-value=0.084 Score=42.59 Aligned_cols=39 Identities=28% Similarity=0.542 Sum_probs=28.0
Q ss_pred CCcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEE
Q psy5241 2 EQAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLIL 46 (132)
Q Consensus 2 ~~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liL 46 (132)
..+.||+|+|.-...- .-| ..+.++.+++.|+|||.|++
T Consensus 113 ~d~sfD~v~~~fglrn----~~d--~~~~l~E~~RVLkPGG~l~i 151 (233)
T PF01209_consen 113 PDNSFDAVTCSFGLRN----FPD--RERALREMYRVLKPGGRLVI 151 (233)
T ss_dssp -TT-EEEEEEES-GGG-----SS--HHHHHHHHHHHEEEEEEEEE
T ss_pred CCCceeEEEHHhhHHh----hCC--HHHHHHHHHHHcCCCeEEEE
Confidence 3578999998776543 334 67899999999999997764
No 65
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=93.67 E-value=0.12 Score=42.43 Aligned_cols=36 Identities=28% Similarity=0.439 Sum_probs=29.5
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEe
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILE 47 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLE 47 (132)
..+||+|+|-.+ -+.+..++..+++.|+|||.||+-
T Consensus 223 ~~~fDlVvan~~---------~~~l~~ll~~~~~~LkpgG~li~s 258 (288)
T TIGR00406 223 EGKADVIVANIL---------AEVIKELYPQFSRLVKPGGWLILS 258 (288)
T ss_pred CCCceEEEEecC---------HHHHHHHHHHHHHHcCCCcEEEEE
Confidence 357999998543 345789999999999999999984
No 66
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=93.50 E-value=0.098 Score=40.39 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=28.3
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEe
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILE 47 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLE 47 (132)
.+.||+|+|-. + ..+..+++.+++.|+|||.++++
T Consensus 107 ~~~fD~I~s~~------~----~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 107 EEQFDVITSRA------L----ASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred cCCccEEEehh------h----hCHHHHHHHHHHhcCCCCEEEEE
Confidence 35899999854 1 23677899999999999999987
No 67
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=93.42 E-value=0.11 Score=40.27 Aligned_cols=53 Identities=13% Similarity=0.221 Sum_probs=37.6
Q ss_pred CcceeEEEEeeeeeeeeccCCcH--HHHHHHHHHHHhhcCCcEEEEecccchhhHh
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDS--GIKRVFMRMYAQLREGGVLILEPQGFQSYKK 56 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~--GL~~ff~r~~~~L~pGg~liLEpQpWksY~r 56 (132)
...||+|++.-...|.+..+.+. -...+++.+++.|+|||.|++-- ++..|.+
T Consensus 109 ~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~-~~~~~~~ 163 (202)
T PRK00121 109 DGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT-DWEGYAE 163 (202)
T ss_pred ccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc-CCHHHHH
Confidence 45799998865556654322211 25789999999999999999864 5666664
No 68
>PRK06922 hypothetical protein; Provisional
Probab=93.22 E-value=0.11 Score=48.67 Aligned_cols=45 Identities=22% Similarity=0.410 Sum_probs=35.4
Q ss_pred CcceeEEEEeeeeeee--ecc-----CCcHHHHHHHHHHHHhhcCCcEEEEe
Q psy5241 3 QAQFDVILCLSVTKWF--HLN-----WGDSGIKRVFMRMYAQLREGGVLILE 47 (132)
Q Consensus 3 ~~~fDvIlclSVTKWI--HLN-----~GD~GL~~ff~r~~~~L~pGg~liLE 47 (132)
...||+|+|-++.=|+ ++. ++++-+..+|+.+++.|+|||.+|+.
T Consensus 485 deSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 485 KESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred CCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 4579999987776433 232 34678999999999999999999995
No 69
>KOG3178|consensus
Probab=93.14 E-value=0.12 Score=45.01 Aligned_cols=39 Identities=26% Similarity=0.534 Sum_probs=33.1
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEE
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLIL 46 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liL 46 (132)
+.=|+|+ .|||==.|+|+-+..||++|+..|.|||.+|+
T Consensus 235 P~~daI~----mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv 273 (342)
T KOG3178|consen 235 PKGDAIW----MKWILHDWTDEDCVKILKNCKKSLPPGGKIIV 273 (342)
T ss_pred CCcCeEE----EEeecccCChHHHHHHHHHHHHhCCCCCEEEE
Confidence 3446554 59999999999999999999999999877765
No 70
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=93.13 E-value=0.17 Score=42.26 Aligned_cols=42 Identities=31% Similarity=0.674 Sum_probs=35.5
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecc
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQ 49 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQ 49 (132)
+.||+|+|=-|.-+.. .+-=++++.+++++|+|||+|+|-+.
T Consensus 201 ~~fD~IfCRNVLIYFd----~~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 201 GKFDLIFCRNVLIYFD----EETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred CCCCEEEEcceEEeeC----HHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 5699999999987764 45567899999999999999999663
No 71
>PLN03075 nicotianamine synthase; Provisional
Probab=93.08 E-value=0.12 Score=43.94 Aligned_cols=86 Identities=14% Similarity=0.231 Sum_probs=56.2
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccchhhHhhhcCChhhhccccceEEcccchHHHHH
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDTIWRNFQAIEFFPHHFTEYLL 83 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpWksY~r~~kl~~~~~~~~~~L~lrP~~f~~yLl 83 (132)
.+||+|+|+.+.=| . .+.=.++|+++++.|+|||+|++.- |.-+|.. +-|..-++ .+
T Consensus 194 ~~FDlVF~~ALi~~---d--k~~k~~vL~~l~~~LkPGG~Lvlr~-----~~G~r~~------------LYp~v~~~-~~ 250 (296)
T PLN03075 194 KEYDVVFLAALVGM---D--KEEKVKVIEHLGKHMAPGALLMLRS-----AHGARAF------------LYPVVDPC-DL 250 (296)
T ss_pred CCcCEEEEeccccc---c--cccHHHHHHHHHHhcCCCcEEEEec-----ccchHhh------------cCCCCChh-hC
Confidence 58999999954222 1 1445899999999999999999985 3322221 22321122 12
Q ss_pred hccCCeeEEEcCCCCCCCCCCCcceEEEEcCCCCC
Q psy5241 84 SEVGFTKCETLGSPLHPSKGFQRPIKMFTKGSKRD 118 (132)
Q Consensus 84 ~~vGF~~~~~l~~~~~~~~gf~RpI~lf~K~~~~~ 118 (132)
+ ||+.+..+-+ ...---.+.+.||+..++
T Consensus 251 ~--gf~~~~~~~P----~~~v~Nsvi~~r~~~~~~ 279 (296)
T PLN03075 251 R--GFEVLSVFHP----TDEVINSVIIARKPGGPV 279 (296)
T ss_pred C--CeEEEEEECC----CCCceeeEEEEEeecCCc
Confidence 2 9998777653 234556788999987665
No 72
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=92.96 E-value=0.23 Score=37.65 Aligned_cols=45 Identities=11% Similarity=0.124 Sum_probs=29.7
Q ss_pred cceeEEEEeee----eeeeeccC-CcHHHHHHHHHHHHhhcCCcEEEEec
Q psy5241 4 AQFDVILCLSV----TKWFHLNW-GDSGIKRVFMRMYAQLREGGVLILEP 48 (132)
Q Consensus 4 ~~fDvIlclSV----TKWIHLN~-GD~GL~~ff~r~~~~L~pGg~liLEp 48 (132)
+.||+|+|-.. -.|-.-.. ..+=+..+++.+++.|+|||.|+++-
T Consensus 97 ~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 97 DKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred CCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 46999998432 12211000 01225789999999999999999974
No 73
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=92.61 E-value=0.31 Score=40.44 Aligned_cols=65 Identities=20% Similarity=0.247 Sum_probs=40.7
Q ss_pred cHHHHHHHHHHHHhhcCCcEEEEecccchhhHhhhcCChhhhccccceEEcccchHHHHHhccCCeeEEEcCC
Q psy5241 24 DSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDTIWRNFQAIEFFPHHFTEYLLSEVGFTKCETLGS 96 (132)
Q Consensus 24 D~GL~~ff~r~~~~L~pGg~liLEpQpWksY~r~~kl~~~~~~~~~~L~lrP~~f~~yLl~~vGF~~~~~l~~ 96 (132)
-+=.-.+++.++..|+|||++++|-.--+-= ..++++. ..-+++|+....-. +..||.+..+-+.
T Consensus 142 ~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG---~~~~dt~----~~~ri~~a~V~a~v-eaaGFkl~aeS~i 206 (238)
T COG4798 142 PATAAKVNAAVFKALKPGGVYLVEDHRADPG---SGLSDTI----TLHRIDPAVVIAEV-EAAGFKLEAESEI 206 (238)
T ss_pred cchHHHHHHHHHHhcCCCcEEEEEeccccCC---CChhhhh----hhcccChHHHHHHH-Hhhcceeeeeehh
Confidence 3445689999999999999999997422110 1122222 22345677554434 3579998876554
No 74
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=92.56 E-value=0.17 Score=39.64 Aligned_cols=40 Identities=25% Similarity=0.448 Sum_probs=32.3
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCC--cEEEEe
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREG--GVLILE 47 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pG--g~liLE 47 (132)
+.+|+|++ ++|=-+|.|+=...+++++++.|+|| |.|||-
T Consensus 157 P~~D~~~l----~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 157 PVADVYLL----RHVLHDWSDEDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp SSESEEEE----ESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred ccccceee----ehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 34898887 56666999999999999999999998 666553
No 75
>PRK04266 fibrillarin; Provisional
Probab=92.52 E-value=0.77 Score=36.94 Aligned_cols=72 Identities=21% Similarity=0.174 Sum_probs=41.1
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccchhhHhhhcCChhhhccccceEEcccchHHHHH
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDTIWRNFQAIEFFPHHFTEYLL 83 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpWksY~r~~kl~~~~~~~~~~L~lrP~~f~~yLl 83 (132)
+.||+|++- +..-| -...+++.+++.|+|||.|++- -+|++-.-. ..+. ..| ++..+ ++
T Consensus 140 ~~~D~i~~d-------~~~p~-~~~~~L~~~~r~LKpGG~lvI~-v~~~~~d~~--~~~~--~~~-------~~~~~-~l 198 (226)
T PRK04266 140 EKVDVIYQD-------VAQPN-QAEIAIDNAEFFLKDGGYLLLA-IKARSIDVT--KDPK--EIF-------KEEIR-KL 198 (226)
T ss_pred ccCCEEEEC-------CCChh-HHHHHHHHHHHhcCCCcEEEEE-EecccccCc--CCHH--HHH-------HHHHH-HH
Confidence 458999853 11111 2355788999999999999997 456321100 0000 001 11234 34
Q ss_pred hccCCeeEEEcCC
Q psy5241 84 SEVGFTKCETLGS 96 (132)
Q Consensus 84 ~~vGF~~~~~l~~ 96 (132)
++.||+.++....
T Consensus 199 ~~aGF~~i~~~~l 211 (226)
T PRK04266 199 EEGGFEILEVVDL 211 (226)
T ss_pred HHcCCeEEEEEcC
Confidence 5679999887664
No 76
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=92.51 E-value=0.19 Score=38.73 Aligned_cols=38 Identities=18% Similarity=0.331 Sum_probs=27.8
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEE
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLIL 46 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liL 46 (132)
.+.||+|++-.+.- |++ -...+++.+++.|+|||.+++
T Consensus 112 ~~~fD~V~~~~~l~--~~~----~~~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 112 DNSFDYVTIGFGLR--NVP----DYMQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred CCCccEEEEecccc--cCC----CHHHHHHHHHHHcCcCeEEEE
Confidence 35799998754422 222 246889999999999999986
No 77
>PRK00536 speE spermidine synthase; Provisional
Probab=92.35 E-value=0.18 Score=41.93 Aligned_cols=75 Identities=17% Similarity=0.237 Sum_probs=45.0
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecc-cchhhHhhhcCChhhhccccceEEcccchHHHH
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQ-GFQSYKKKRKLTDTIWRNFQAIEFFPHHFTEYL 82 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQ-pWksY~r~~kl~~~~~~~~~~L~lrP~~f~~yL 82 (132)
++||||++=|. ++ ..|++.+.+.|+|||+++.... ||-.-.--+..-.++.+.|....---..++.|
T Consensus 138 ~~fDVIIvDs~---------~~--~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~~v~~y~~~vp~~- 205 (262)
T PRK00536 138 KKYDLIICLQE---------PD--IHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFSIAMPFVAPLRIL- 205 (262)
T ss_pred CcCCEEEEcCC---------CC--hHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCCceEEEEecCCCc-
Confidence 68999999863 22 7999999999999999999654 34211112233334444455333332333444
Q ss_pred HhccCCeeE
Q psy5241 83 LSEVGFTKC 91 (132)
Q Consensus 83 l~~vGF~~~ 91 (132)
...||...
T Consensus 206 -g~wgf~~a 213 (262)
T PRK00536 206 -SNKGYIYA 213 (262)
T ss_pred -chhhhhee
Confidence 34577543
No 78
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=92.34 E-value=0.21 Score=39.70 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=30.2
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEe
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILE 47 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLE 47 (132)
+.||.|+.-.+ ++||+ .+--.+++++|.++|+|||.++++
T Consensus 112 ~~fD~i~D~~~--~~~l~--~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 112 GPVDAVYDRAA--LIALP--EEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred CCcCEEEechh--hccCC--HHHHHHHHHHHHHHcCCCCeEEEE
Confidence 46888876433 35885 455677999999999999987766
No 79
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=92.29 E-value=0.32 Score=42.33 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=37.3
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccchhhH
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYK 55 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpWksY~ 55 (132)
.+||+|+|-.---+.|- ..|+-..++|+.+++.|+|||.|+++.+---.|.
T Consensus 297 ~~fDlIlsNPPfh~~~~-~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~ 347 (378)
T PRK15001 297 FRFNAVLCNPPFHQQHA-LTDNVAWEMFHHARRCLKINGELYIVANRHLDYF 347 (378)
T ss_pred CCEEEEEECcCcccCcc-CCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHH
Confidence 47999999443333332 3556678999999999999999999975444444
No 80
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=92.23 E-value=0.061 Score=42.21 Aligned_cols=34 Identities=21% Similarity=0.457 Sum_probs=24.1
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEec
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEP 48 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEp 48 (132)
...||+|+|-... ..+...++++|+|||.||+.-
T Consensus 143 ~~~fD~I~~~~~~------------~~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 143 NAPYDRIYVTAAG------------PDIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCCcCEEEECCCc------------ccchHHHHHhhCCCcEEEEEE
Confidence 3579999874332 233456778899999999953
No 81
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=92.17 E-value=0.17 Score=41.11 Aligned_cols=95 Identities=17% Similarity=0.206 Sum_probs=54.7
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccchhhHhhhcCChhhhccccceEEcccchHHHH
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDTIWRNFQAIEFFPHHFTEYL 82 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpWksY~r~~kl~~~~~~~~~~L~lrP~~f~~yL 82 (132)
..+||+|+|--|--++. ..+=|.++.+++.+.|+|||.||+--..=..+++- .| .+--+.+.+.|
T Consensus 104 ~~~FDLIV~SEVlYYL~---~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~w--------gh----~~ga~tv~~~~ 168 (201)
T PF05401_consen 104 EGRFDLIVLSEVLYYLD---DAEDLRAALDRLVAALAPGGHLVFGHARDANCRRW--------GH----AAGAETVLEML 168 (201)
T ss_dssp SS-EEEEEEES-GGGSS---SHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHT--------T-----S--HHHHHHHH
T ss_pred CCCeeEEEEehHhHcCC---CHHHHHHHHHHHHHHhCCCCEEEEEEecCCccccc--------Cc----ccchHHHHHHH
Confidence 46899999999987762 23689999999999999999999976432233321 10 11112345545
Q ss_pred HhccCCeeEEEcCCCCCCCCCCCcceEEEEcCC
Q psy5241 83 LSEVGFTKCETLGSPLHPSKGFQRPIKMFTKGS 115 (132)
Q Consensus 83 l~~vGF~~~~~l~~~~~~~~gf~RpI~lf~K~~ 115 (132)
.+. |..++.+.... .+.+=+=-|--|+|+.
T Consensus 169 ~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 198 (201)
T PF05401_consen 169 QEH--LTEVERVECRG-GSPNEDCLLARFRNPV 198 (201)
T ss_dssp HHH--SEEEEEEEEE--SSTTSEEEEEEEE--S
T ss_pred HHH--hhheeEEEEcC-CCCCCceEeeeecCCc
Confidence 442 44455444332 2444455566666654
No 82
>PRK14967 putative methyltransferase; Provisional
Probab=92.10 E-value=0.42 Score=37.35 Aligned_cols=30 Identities=23% Similarity=0.279 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhhcCCcEEEEecccchhhH
Q psy5241 26 GIKRVFMRMYAQLREGGVLILEPQGFQSYK 55 (132)
Q Consensus 26 GL~~ff~r~~~~L~pGg~liLEpQpWksY~ 55 (132)
.+.++++.+++.|+|||.|++....+..+.
T Consensus 137 ~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~ 166 (223)
T PRK14967 137 VLDRLCDAAPALLAPGGSLLLVQSELSGVE 166 (223)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEecccCHH
Confidence 467899999999999999998655554443
No 83
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=92.00 E-value=0.18 Score=40.24 Aligned_cols=40 Identities=18% Similarity=0.304 Sum_probs=31.9
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEe
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILE 47 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLE 47 (132)
..||+|++-.|.+.+| -+=+..+++.|-+.++|||+++++
T Consensus 93 ~~yD~I~st~v~~fL~----~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 93 EEYDFIVSTVVFMFLQ----RELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp TTEEEEEEESSGGGS-----GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCcCEEEEEEEeccCC----HHHHHHHHHHHHhhcCCcEEEEEE
Confidence 5799999877776554 334678999999999999999885
No 84
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=91.99 E-value=0.16 Score=38.86 Aligned_cols=39 Identities=23% Similarity=0.482 Sum_probs=31.3
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEec
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEP 48 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEp 48 (132)
..||+|+|..+..++ +....+++.+.+.|+|||.+++..
T Consensus 111 ~~~D~i~~~~~l~~~------~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 111 KSFDVVTCMEVLEHV------PDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred CCccEEEehhHHHhC------CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 579999997655443 356789999999999999998864
No 85
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=91.97 E-value=0.3 Score=39.59 Aligned_cols=97 Identities=24% Similarity=0.433 Sum_probs=65.4
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccchhhHhhhcCChhhhccc-cceEEc-cc----
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDTIWRNF-QAIEFF-PH---- 76 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpWksY~r~~kl~~~~~~~~-~~L~lr-P~---- 76 (132)
...||.|+|--+ ||+--= +-...+|+.+.+.|+|||.|++-= |++ ..=+.+.+-.+.| .+|+-| |+
T Consensus 100 ~~~~D~i~~~N~---lHI~p~-~~~~~lf~~a~~~L~~gG~L~~YG-PF~---~~G~~ts~SN~~FD~sLr~rdp~~GiR 171 (204)
T PF06080_consen 100 PESFDAIFCINM---LHISPW-SAVEGLFAGAARLLKPGGLLFLYG-PFN---RDGKFTSESNAAFDASLRSRDPEWGIR 171 (204)
T ss_pred CCCcceeeehhH---HHhcCH-HHHHHHHHHHHHhCCCCCEEEEeC-Ccc---cCCEeCCcHHHHHHHHHhcCCCCcCcc
Confidence 458999999776 576543 445899999999999999999865 443 3334444444444 355555 43
Q ss_pred chHHH--HHhccCCeeEEEcCCCCCCCCCCCcceEEEEc
Q psy5241 77 HFTEY--LLSEVGFTKCETLGSPLHPSKGFQRPIKMFTK 113 (132)
Q Consensus 77 ~f~~y--Ll~~vGF~~~~~l~~~~~~~~gf~RpI~lf~K 113 (132)
++++. |-.+.|+++.+.+.+|.| --++||+|
T Consensus 172 D~e~v~~lA~~~GL~l~~~~~MPAN------N~~Lvfrk 204 (204)
T PF06080_consen 172 DIEDVEALAAAHGLELEEDIDMPAN------NLLLVFRK 204 (204)
T ss_pred CHHHHHHHHHHCCCccCcccccCCC------CeEEEEeC
Confidence 44442 444889999999998854 24667765
No 86
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=91.64 E-value=0.33 Score=41.38 Aligned_cols=53 Identities=17% Similarity=0.261 Sum_probs=38.9
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccchhhHh
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKK 56 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpWksY~r 56 (132)
.++||+|+|-.---+ -+...++-..+|++.+.+.|+|||.|+|-...+-.|..
T Consensus 259 ~~~fDlIvsNPPFH~-g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~ 311 (342)
T PRK09489 259 KGRFDMIISNPPFHD-GIQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPD 311 (342)
T ss_pred CCCccEEEECCCccC-CccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHH
Confidence 357999999543211 02334567899999999999999999998776666653
No 87
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=91.62 E-value=0.21 Score=42.61 Aligned_cols=42 Identities=24% Similarity=0.452 Sum_probs=34.2
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHH-HHHHHHHhhcCCcEEEEec
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKR-VFMRMYAQLREGGVLILEP 48 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~-ff~r~~~~L~pGg~liLEp 48 (132)
.+||||-|.=- ||--..++.-.+ |++-|++.|+|||+||.--
T Consensus 144 ~~FDvVScQFa---lHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~ 186 (331)
T PF03291_consen 144 RKFDVVSCQFA---LHYAFESEEKARQFLKNVSSLLKPGGYFIGTT 186 (331)
T ss_dssp S-EEEEEEES----GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCcceeehHHH---HHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 48999999732 788888877655 9999999999999999765
No 88
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=91.28 E-value=0.3 Score=43.67 Aligned_cols=45 Identities=22% Similarity=0.269 Sum_probs=33.0
Q ss_pred cceeEEEEe--------------eeeee-e--eccCCcHHH---HHHHHHHHHhhcCCcEEEEec
Q psy5241 4 AQFDVILCL--------------SVTKW-F--HLNWGDSGI---KRVFMRMYAQLREGGVLILEP 48 (132)
Q Consensus 4 ~~fDvIlcl--------------SVTKW-I--HLN~GD~GL---~~ff~r~~~~L~pGg~liLEp 48 (132)
.+||+|+|- +|.++ - =|-.|++|| +++++.+...|+|||.|++|-
T Consensus 205 ~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 205 QKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred CCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 479999982 22221 1 155788886 457888899999999999995
No 89
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=90.98 E-value=0.31 Score=41.19 Aligned_cols=83 Identities=25% Similarity=0.348 Sum_probs=54.7
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEec-ccchhhHhh---hcCChhhhccccceEEcccchH
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEP-QGFQSYKKK---RKLTDTIWRNFQAIEFFPHHFT 79 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEp-QpWksY~r~---~kl~~~~~~~~~~L~lrP~~f~ 79 (132)
.+||+|.||.| |..-|+= ..+++.|++.|+|+|+|||-- =||+-|.-. +...+ ...|.+.++.|+
T Consensus 150 ~~fDvIscLNv-----LDRc~~P-~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P-----~e~l~~~g~~~E 218 (265)
T PF05219_consen 150 FKFDVISCLNV-----LDRCDRP-LTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRP-----SELLPVKGATFE 218 (265)
T ss_pred CceEEEeehhh-----hhccCCH-HHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCc-----hhhcCCCCCcHH
Confidence 47999999987 4555554 468999999999999998864 489999742 11111 133444544443
Q ss_pred HH------HHhccCCeeEEEcCCC
Q psy5241 80 EY------LLSEVGFTKCETLGSP 97 (132)
Q Consensus 80 ~y------Ll~~vGF~~~~~l~~~ 97 (132)
+. +++.+||+...--..|
T Consensus 219 ~~v~~l~~v~~p~GF~v~~~tr~P 242 (265)
T PF05219_consen 219 EQVSSLVNVFEPAGFEVERWTRLP 242 (265)
T ss_pred HHHHHHHHHHHhcCCEEEEEeccC
Confidence 33 3357899876654444
No 90
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=90.64 E-value=0.41 Score=39.54 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=26.7
Q ss_pred eEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEE
Q psy5241 7 DVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLIL 46 (132)
Q Consensus 7 DvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liL 46 (132)
|.++|++-.-.-|++ ++-..+||+++++.|+|||.|++
T Consensus 138 ~~~~~~~gs~~~~~~--~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 138 RRLGFFPGSTIGNFT--PEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred CeEEEEecccccCCC--HHHHHHHHHHHHHhcCCCCEEEE
Confidence 344444333233333 66678999999999999999997
No 91
>PRK14968 putative methyltransferase; Provisional
Probab=90.32 E-value=0.51 Score=34.68 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhhcCCcEEEEec
Q psy5241 26 GIKRVFMRMYAQLREGGVLILEP 48 (132)
Q Consensus 26 GL~~ff~r~~~~L~pGg~liLEp 48 (132)
-+..+++.+.+.|+|||.+++.-
T Consensus 126 ~~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 126 VIDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred HHHHHHHHHHHhcCCCeEEEEEE
Confidence 37889999999999999998865
No 92
>PRK04457 spermidine synthase; Provisional
Probab=90.23 E-value=0.36 Score=39.39 Aligned_cols=40 Identities=18% Similarity=0.149 Sum_probs=27.6
Q ss_pred cceeEEEEeeeeeeeeccCCcHH--HHHHHHHHHHhhcCCcEEEEe
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSG--IKRVFMRMYAQLREGGVLILE 47 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~G--L~~ff~r~~~~L~pGg~liLE 47 (132)
++||+|++=.. |-..-.+. ...||+.+.+.|+|||+|++-
T Consensus 135 ~~yD~I~~D~~----~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 135 HSTDVILVDGF----DGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CCCCEEEEeCC----CCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 57999997421 00000111 369999999999999999994
No 93
>PTZ00146 fibrillarin; Provisional
Probab=89.97 E-value=2.2 Score=36.30 Aligned_cols=68 Identities=21% Similarity=0.192 Sum_probs=40.0
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccchhhHhhhcCChhhhccccceEEcccch----H
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDTIWRNFQAIEFFPHHF----T 79 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpWksY~r~~kl~~~~~~~~~~L~lrP~~f----~ 79 (132)
+.+|+|+|--.. . | -...+...+...|+|||.|+++- .|.| -.....|++. .
T Consensus 201 ~~vDvV~~Dva~----p---d-q~~il~~na~r~LKpGG~~vI~i-ka~~---------------id~g~~pe~~f~~ev 256 (293)
T PTZ00146 201 PMVDVIFADVAQ----P---D-QARIVALNAQYFLKNGGHFIISI-KANC---------------IDSTAKPEVVFASEV 256 (293)
T ss_pred CCCCEEEEeCCC----c---c-hHHHHHHHHHHhccCCCEEEEEE-eccc---------------cccCCCHHHHHHHHH
Confidence 468999886532 1 1 23344556778899999999961 2222 1111123322 2
Q ss_pred HHHHhccCCeeEEEcCC
Q psy5241 80 EYLLSEVGFTKCETLGS 96 (132)
Q Consensus 80 ~yLl~~vGF~~~~~l~~ 96 (132)
+.| ++.||+..+.+..
T Consensus 257 ~~L-~~~GF~~~e~v~L 272 (293)
T PTZ00146 257 QKL-KKEGLKPKEQLTL 272 (293)
T ss_pred HHH-HHcCCceEEEEec
Confidence 444 5669998888764
No 94
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=89.34 E-value=0.39 Score=36.99 Aligned_cols=33 Identities=33% Similarity=0.535 Sum_probs=24.0
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEec
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEP 48 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEp 48 (132)
+.||+|++-... ..+.+.+.++|+|||.||+--
T Consensus 143 ~~fD~I~~~~~~------------~~~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 143 APFDRILVTAAA------------PEIPRALLEQLKEGGILVAPV 175 (212)
T ss_pred CCcCEEEEccCc------------hhhhHHHHHhcCCCcEEEEEE
Confidence 579999985432 223456789999999999843
No 95
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=88.86 E-value=0.64 Score=31.55 Aligned_cols=26 Identities=19% Similarity=0.480 Sum_probs=22.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCcEEEEe
Q psy5241 22 WGDSGIKRVFMRMYAQLREGGVLILE 47 (132)
Q Consensus 22 ~GD~GL~~ff~r~~~~L~pGg~liLE 47 (132)
.++.-+.++++.+++.|+|||.|++.
T Consensus 96 ~~~~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 96 GSGGLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred CcchhHHHHHHHHHHHcCCCCEEEEE
Confidence 34566789999999999999999986
No 96
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=88.77 E-value=0.9 Score=36.40 Aligned_cols=43 Identities=9% Similarity=0.325 Sum_probs=34.4
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccchhh
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSY 54 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpWksY 54 (132)
.+.||+|++ +.-.+....+|..+...|+|||++|+.-=-|+..
T Consensus 142 ~~~fD~Vfi---------Da~k~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~ 184 (234)
T PLN02781 142 KPEFDFAFV---------DADKPNYVHFHEQLLKLVKVGGIIAFDNTLWFGF 184 (234)
T ss_pred CCCCCEEEE---------CCCHHHHHHHHHHHHHhcCCCeEEEEEcCCcCCe
Confidence 357999987 2223678899999999999999999988777654
No 97
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=88.20 E-value=0.57 Score=37.92 Aligned_cols=29 Identities=34% Similarity=0.516 Sum_probs=25.3
Q ss_pred ccCCcHHH---HHHHHHHHHhhcCCcEEEEec
Q psy5241 20 LNWGDSGI---KRVFMRMYAQLREGGVLILEP 48 (132)
Q Consensus 20 LN~GD~GL---~~ff~r~~~~L~pGg~liLEp 48 (132)
|..|++|+ +++++.+...|+|||.|++|-
T Consensus 185 l~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 185 LDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred hcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 55677885 889999999999999999996
No 98
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=87.82 E-value=0.65 Score=36.04 Aligned_cols=33 Identities=30% Similarity=0.565 Sum_probs=24.8
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEec
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEP 48 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEp 48 (132)
..||+|+|-.... .+-..++++|+|||.|++--
T Consensus 141 ~~fD~Ii~~~~~~------------~~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 141 APFDAIIVTAAAS------------TIPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred CCccEEEEccCcc------------hhhHHHHHhcCcCcEEEEEE
Confidence 5799999876543 23357789999999998843
No 99
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=87.81 E-value=0.5 Score=38.08 Aligned_cols=32 Identities=16% Similarity=0.276 Sum_probs=23.4
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEe
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILE 47 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLE 47 (132)
.+.||+|++.-. ..+++.+++.|+|||+||+-
T Consensus 149 ~~sfD~I~~~~~-------------~~~~~e~~rvLkpgG~li~~ 180 (272)
T PRK11088 149 DQSLDAIIRIYA-------------PCKAEELARVVKPGGIVITV 180 (272)
T ss_pred CCceeEEEEecC-------------CCCHHHHHhhccCCCEEEEE
Confidence 457999987421 12457788899999999875
No 100
>PRK01581 speE spermidine synthase; Validated
Probab=87.69 E-value=0.82 Score=40.26 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=30.6
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHH--HHHHHHHHHhhcCCcEEEEeccc
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGI--KRVFMRMYAQLREGGVLILEPQG 50 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL--~~ff~r~~~~L~pGg~liLEpQp 50 (132)
.++||+|++=. +.=+ +..-..| ..||+.+.+.|+|||+|+...+.
T Consensus 224 ~~~YDVIIvDl-~DP~--~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~s 270 (374)
T PRK01581 224 SSLYDVIIIDF-PDPA--TELLSTLYTSELFARIATFLTEDGAFVCQSNS 270 (374)
T ss_pred CCCccEEEEcC-CCcc--ccchhhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 35799999863 2111 0011223 57999999999999999998653
No 101
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=87.53 E-value=0.46 Score=36.94 Aligned_cols=35 Identities=26% Similarity=0.431 Sum_probs=24.5
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEeccc
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQG 50 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQp 50 (132)
..||+|++-.. ...+...+.++|+|||.||+--..
T Consensus 145 ~~fD~Ii~~~~------------~~~~~~~~~~~L~~gG~lv~~~~~ 179 (215)
T TIGR00080 145 APYDRIYVTAA------------GPKIPEALIDQLKEGGILVMPVGE 179 (215)
T ss_pred CCCCEEEEcCC------------cccccHHHHHhcCcCcEEEEEEcC
Confidence 47999986432 233456678899999999985433
No 102
>KOG4300|consensus
Probab=87.31 E-value=1 Score=37.76 Aligned_cols=44 Identities=23% Similarity=0.408 Sum_probs=33.5
Q ss_pred CCcceeEEEEe----eeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccchhhH
Q psy5241 2 EQAQFDVILCL----SVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYK 55 (132)
Q Consensus 2 ~~~~fDvIlcl----SVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpWksY~ 55 (132)
....||+|.|- ||++ -.+.+..+.++|||||++|+=-.-=.-|.
T Consensus 142 ~d~s~DtVV~TlvLCSve~----------~~k~L~e~~rlLRpgG~iifiEHva~~y~ 189 (252)
T KOG4300|consen 142 ADGSYDTVVCTLVLCSVED----------PVKQLNEVRRLLRPGGRIIFIEHVAGEYG 189 (252)
T ss_pred ccCCeeeEEEEEEEeccCC----------HHHHHHHHHHhcCCCcEEEEEecccccch
Confidence 35689999874 5543 57789999999999999988666555555
No 103
>PRK07402 precorrin-6B methylase; Provisional
Probab=87.26 E-value=0.93 Score=34.56 Aligned_cols=25 Identities=24% Similarity=0.491 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEecc
Q psy5241 25 SGIKRVFMRMYAQLREGGVLILEPQ 49 (132)
Q Consensus 25 ~GL~~ff~r~~~~L~pGg~liLEpQ 49 (132)
..+..+++.+++.|+|||.|+++--
T Consensus 119 ~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 119 RPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred cCHHHHHHHHHHhcCCCeEEEEEee
Confidence 4578999999999999999999853
No 104
>PRK03612 spermidine synthase; Provisional
Probab=87.09 E-value=0.89 Score=40.70 Aligned_cols=44 Identities=16% Similarity=0.198 Sum_probs=29.8
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHH--HHHHHHHHHhhcCCcEEEEecc
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGI--KRVFMRMYAQLREGGVLILEPQ 49 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL--~~ff~r~~~~L~pGg~liLEpQ 49 (132)
.++||+|++=.-..+. -+-..| ..||+.+.+.|+|||+++++..
T Consensus 371 ~~~fDvIi~D~~~~~~---~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 371 AEKFDVIIVDLPDPSN---PALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred CCCCCEEEEeCCCCCC---cchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 3589999985332220 000111 4699999999999999999764
No 105
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=87.03 E-value=1 Score=35.30 Aligned_cols=43 Identities=23% Similarity=0.374 Sum_probs=31.7
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEeccc
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQG 50 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQp 50 (132)
...||+|+|..|. .|++ ++-+.++++++++.++ +-++|.|...
T Consensus 103 ~~sfD~V~~~~vL--~hl~--p~~~~~~l~el~r~~~-~~v~i~e~~~ 145 (204)
T TIGR03587 103 DNFFDLVLTKGVL--IHIN--PDNLPTAYRELYRCSN-RYILIAEYYN 145 (204)
T ss_pred CCCEEEEEECChh--hhCC--HHHHHHHHHHHHhhcC-cEEEEEEeeC
Confidence 4589999987765 4774 5789999999999873 3455666543
No 106
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=86.87 E-value=0.61 Score=39.57 Aligned_cols=41 Identities=34% Similarity=0.647 Sum_probs=34.5
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEec
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEP 48 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEp 48 (132)
+.||-|. ||=|.=|+ |.+....||+++++.|+|||.++|-.
T Consensus 136 e~fDrIv--SvgmfEhv--g~~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 136 EPFDRIV--SVGMFEHV--GKENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred cccceee--ehhhHHHh--CcccHHHHHHHHHhhcCCCceEEEEE
Confidence 3488875 78888886 55899999999999999999999863
No 107
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=86.80 E-value=0.89 Score=36.25 Aligned_cols=39 Identities=21% Similarity=0.180 Sum_probs=29.0
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEE
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLIL 46 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liL 46 (132)
..||.|+- .+-|+||+ .+.-.++++.+.++|+|||.+++
T Consensus 115 ~~fd~v~D--~~~~~~l~--~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 115 ADVDAVYD--RAALIALP--EEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CCeeEEEe--hHhHhhCC--HHHHHHHHHHHHHHcCCCCeEEE
Confidence 35666664 44677886 45578999999999999987554
No 108
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=86.72 E-value=0.77 Score=37.81 Aligned_cols=30 Identities=33% Similarity=0.643 Sum_probs=25.2
Q ss_pred ccCCcHHH---HHHHHHHHHhhcCCcEEEEecc
Q psy5241 20 LNWGDSGI---KRVFMRMYAQLREGGVLILEPQ 49 (132)
Q Consensus 20 LN~GD~GL---~~ff~r~~~~L~pGg~liLEpQ 49 (132)
|-.|++|+ +++++.+.+.|+|||.+++|--
T Consensus 220 l~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 220 LASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred hcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 44577774 6889999999999999999974
No 109
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=86.49 E-value=1.7 Score=26.97 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=30.0
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccchh
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQS 53 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpWks 53 (132)
..||++ +.....+ |.+ ....+..+...|+|+|.+++.......
T Consensus 118 ~~~d~~-~~~~~~~-~~~-----~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 118 ASFDLV-ISLLVLH-LLP-----PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred CceeEE-eeeeehh-cCC-----HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 368988 4443322 222 889999999999999998887654433
No 110
>PLN02823 spermine synthase
Probab=86.30 E-value=0.86 Score=39.04 Aligned_cols=45 Identities=20% Similarity=0.318 Sum_probs=30.1
Q ss_pred CcceeEEEEeeeeeeeeccCCcH-H--HHHHHH-HHHHhhcCCcEEEEeccc
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDS-G--IKRVFM-RMYAQLREGGVLILEPQG 50 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~-G--L~~ff~-r~~~~L~pGg~liLEpQp 50 (132)
.++||+|++=..--+ +.|-. . =+.||+ .+.+.|+|||+|++...+
T Consensus 174 ~~~yDvIi~D~~dp~---~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s 222 (336)
T PLN02823 174 DEKFDVIIGDLADPV---EGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGP 222 (336)
T ss_pred CCCccEEEecCCCcc---ccCcchhhccHHHHHHHHHHhcCCCcEEEEeccC
Confidence 357999997642111 11211 1 246888 899999999999998654
No 111
>KOG1270|consensus
Probab=86.24 E-value=0.5 Score=40.30 Aligned_cols=86 Identities=20% Similarity=0.317 Sum_probs=55.7
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEec--ccchhhHhhhcCChhhhc------cccceEEc
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEP--QGFQSYKKKRKLTDTIWR------NFQAIEFF 74 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEp--QpWksY~r~~kl~~~~~~------~~~~L~lr 74 (132)
.+.||+|+|+=|. .|. +-+..|...++++|+|||.|+|-. -.|.||.-.--++|-... |--+.-+.
T Consensus 156 ~~~fDaVvcsevl--eHV----~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~ 229 (282)
T KOG1270|consen 156 TGKFDAVVCSEVL--EHV----KDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFIN 229 (282)
T ss_pred ccccceeeeHHHH--HHH----hCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCC
Confidence 3569999999875 443 347899999999999999999853 567777632111111111 00112255
Q ss_pred ccchHHHHHhccCCeeEEEcC
Q psy5241 75 PHHFTEYLLSEVGFTKCETLG 95 (132)
Q Consensus 75 P~~f~~yLl~~vGF~~~~~l~ 95 (132)
|+...++|... |+......|
T Consensus 230 p~e~~~~l~~~-~~~v~~v~G 249 (282)
T KOG1270|consen 230 PEELTSILNAN-GAQVNDVVG 249 (282)
T ss_pred HHHHHHHHHhc-Ccchhhhhc
Confidence 77888887664 777665555
No 112
>PRK06202 hypothetical protein; Provisional
Probab=85.89 E-value=1.6 Score=34.07 Aligned_cols=84 Identities=18% Similarity=0.193 Sum_probs=47.1
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecc-cchhhHhhhcCChhhh-------ccccceE--
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQ-GFQSYKKKRKLTDTIW-------RNFQAIE-- 72 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQ-pWksY~r~~kl~~~~~-------~~~~~L~-- 72 (132)
.+.||+|+|..+.- |+ .|+-+.++|+.+++.++ |+++|.+.. +.-.|......+.... +...++.
T Consensus 127 ~~~fD~V~~~~~lh--h~--~d~~~~~~l~~~~r~~~-~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~ 201 (232)
T PRK06202 127 GERFDVVTSNHFLH--HL--DDAEVVRLLADSAALAR-RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRS 201 (232)
T ss_pred CCCccEEEECCeee--cC--ChHHHHHHHHHHHHhcC-eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhh
Confidence 35799999987743 33 36668899999999997 444444432 2223432111111110 1123332
Q ss_pred EcccchHHHHHhccCCeeEEE
Q psy5241 73 FFPHHFTEYLLSEVGFTKCET 93 (132)
Q Consensus 73 lrP~~f~~yLl~~vGF~~~~~ 93 (132)
+.++.+.+.|. + ||+....
T Consensus 202 ~~~~el~~ll~-~-Gf~~~~~ 220 (232)
T PRK06202 202 YTPAELAALAP-Q-GWRVERQ 220 (232)
T ss_pred cCHHHHHHHhh-C-CCeEEec
Confidence 33568888554 5 9985544
No 113
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=85.88 E-value=1.3 Score=37.22 Aligned_cols=36 Identities=25% Similarity=0.457 Sum_probs=30.6
Q ss_pred ceeEEEEeeeeeeeeccCCcHHH------HHHHHHHHHhhcCCcEEEEec
Q psy5241 5 QFDVILCLSVTKWFHLNWGDSGI------KRVFMRMYAQLREGGVLILEP 48 (132)
Q Consensus 5 ~fDvIlclSVTKWIHLN~GD~GL------~~ff~r~~~~L~pGg~liLEp 48 (132)
+||||++-|.- + .|- +.||+.+.+.|+++|+++...
T Consensus 149 ~fDvIi~D~td-------p-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 149 KFDVIIVDSTD-------P-VGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred cCCEEEEcCCC-------C-CCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 79999998863 2 355 899999999999999999983
No 114
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=84.71 E-value=1.4 Score=36.24 Aligned_cols=39 Identities=23% Similarity=0.399 Sum_probs=29.0
Q ss_pred CCcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEE
Q psy5241 2 EQAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLIL 46 (132)
Q Consensus 2 ~~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liL 46 (132)
+.+.||.|.|--..=++. =..+.++.+++.|+|||.|++
T Consensus 116 ~D~sFD~vt~~fglrnv~------d~~~aL~E~~RVlKpgG~~~v 154 (238)
T COG2226 116 PDNSFDAVTISFGLRNVT------DIDKALKEMYRVLKPGGRLLV 154 (238)
T ss_pred CCCccCEEEeeehhhcCC------CHHHHHHHHHHhhcCCeEEEE
Confidence 457899888766655554 366778888899999997654
No 115
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=83.41 E-value=1.8 Score=37.59 Aligned_cols=21 Identities=19% Similarity=0.507 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhcCCcEEEEe
Q psy5241 27 IKRVFMRMYAQLREGGVLILE 47 (132)
Q Consensus 27 L~~ff~r~~~~L~pGg~liLE 47 (132)
.+++++.++..|+|||.|+.-
T Consensus 351 q~~iL~~a~~~LkpGG~lvys 371 (427)
T PRK10901 351 QSEILDALWPLLKPGGTLLYA 371 (427)
T ss_pred HHHHHHHHHHhcCCCCEEEEE
Confidence 457899999999999999953
No 116
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=83.12 E-value=2.7 Score=31.97 Aligned_cols=85 Identities=14% Similarity=0.271 Sum_probs=44.4
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccchhhHhh-----h-cCChh--h-hcccc--ce
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKK-----R-KLTDT--I-WRNFQ--AI 71 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpWksY~r~-----~-kl~~~--~-~~~~~--~L 71 (132)
.+.||+|+|..+.-|++ | ...+++.+.+. ++..|+.-..+.....+ + ++... . +.-++ .+
T Consensus 73 ~~sfD~Vi~~~~l~~~~----d--~~~~l~e~~r~---~~~~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (194)
T TIGR02081 73 DKSFDYVILSQTLQATR----N--PEEILDEMLRV---GRHAIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNI 143 (194)
T ss_pred CCCcCEEEEhhHhHcCc----C--HHHHHHHHHHh---CCeEEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCc
Confidence 35799999998765442 2 55677776654 46666654333222111 1 11100 0 00011 12
Q ss_pred EE-cccchHHHHHhccCCeeEEEcCCC
Q psy5241 72 EF-FPHHFTEYLLSEVGFTKCETLGSP 97 (132)
Q Consensus 72 ~l-rP~~f~~yLl~~vGF~~~~~l~~~ 97 (132)
++ .++.+.+ |+++.||+.++....+
T Consensus 144 ~~~s~~~~~~-ll~~~Gf~v~~~~~~~ 169 (194)
T TIGR02081 144 HFCTIADFED-LCGELNLRILDRAAFD 169 (194)
T ss_pred ccCcHHHHHH-HHHHCCCEEEEEEEec
Confidence 22 2567777 4466899998876644
No 117
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=81.78 E-value=0.75 Score=37.32 Aligned_cols=80 Identities=16% Similarity=0.184 Sum_probs=46.2
Q ss_pred ceeEEEEeeeeeeeeccCCcHH---HHHHHHHHHHhhcCCcEEEEecccchhhH-hhhcCChhhhccccceEEcccchHH
Q psy5241 5 QFDVILCLSVTKWFHLNWGDSG---IKRVFMRMYAQLREGGVLILEPQGFQSYK-KKRKLTDTIWRNFQAIEFFPHHFTE 80 (132)
Q Consensus 5 ~fDvIlclSVTKWIHLN~GD~G---L~~ff~r~~~~L~pGg~liLEpQpWksY~-r~~kl~~~~~~~~~~L~lrP~~f~~ 80 (132)
+||+|+.=+.. - .|... -+.||+.+.+.|+|||++++......... -.+....++...|.....--..++.
T Consensus 150 ~yDvIi~D~~d-p----~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vP~ 224 (246)
T PF01564_consen 150 KYDVIIVDLTD-P----DGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPYTAYVPS 224 (246)
T ss_dssp -EEEEEEESSS-T----TSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEEEEECTT
T ss_pred cccEEEEeCCC-C----CCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEEEEEcCe
Confidence 79999875543 1 12222 37999999999999999999763222221 2333444555666633333344555
Q ss_pred HHHhccCCe
Q psy5241 81 YLLSEVGFT 89 (132)
Q Consensus 81 yLl~~vGF~ 89 (132)
|...-.+|.
T Consensus 225 ~~~~~~~~~ 233 (246)
T PF01564_consen 225 YGSGWWSFA 233 (246)
T ss_dssp SCSSEEEEE
T ss_pred ecccceeEE
Confidence 554333443
No 118
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=80.49 E-value=2.1 Score=39.69 Aligned_cols=45 Identities=24% Similarity=0.245 Sum_probs=33.4
Q ss_pred cceeEEEE----eeeeeee-eccCCcHHHHHHHHHHHHhhcCCcEEEEec
Q psy5241 4 AQFDVILC----LSVTKWF-HLNWGDSGIKRVFMRMYAQLREGGVLILEP 48 (132)
Q Consensus 4 ~~fDvIlc----lSVTKWI-HLN~GD~GL~~ff~r~~~~L~pGg~liLEp 48 (132)
.+||+|+| |+-.|-. ++-.+..+...++..+..+|+|||+|+++.
T Consensus 607 ~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 607 EQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred CCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 57999998 3433321 233455678889999999999999999985
No 119
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=80.36 E-value=2.2 Score=37.25 Aligned_cols=45 Identities=20% Similarity=0.268 Sum_probs=29.8
Q ss_pred cceeEEEE----eeeeee-----eeccCCcHHH-------HHHHHHHHHhhcCCcEEEEec
Q psy5241 4 AQFDVILC----LSVTKW-----FHLNWGDSGI-------KRVFMRMYAQLREGGVLILEP 48 (132)
Q Consensus 4 ~~fDvIlc----lSVTKW-----IHLN~GD~GL-------~~ff~r~~~~L~pGg~liLEp 48 (132)
..||+|++ -+...| ++.....+.+ .++++.+++.|+|||+||..-
T Consensus 317 ~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 317 EQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred CCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 46999994 333222 1122333433 468999999999999999843
No 120
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=80.34 E-value=2.6 Score=36.63 Aligned_cols=43 Identities=23% Similarity=0.379 Sum_probs=28.6
Q ss_pred cceeEEEEe----eeeee-----eeccCCcHHH-------HHHHHHHHHhhcCCcEEEE
Q psy5241 4 AQFDVILCL----SVTKW-----FHLNWGDSGI-------KRVFMRMYAQLREGGVLIL 46 (132)
Q Consensus 4 ~~fDvIlcl----SVTKW-----IHLN~GD~GL-------~~ff~r~~~~L~pGg~liL 46 (132)
+.||+|+|- +.-.+ +......+++ ..+++.++..|+|||.||.
T Consensus 319 ~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy 377 (444)
T PRK14902 319 EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVY 377 (444)
T ss_pred ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 479999962 22111 1223444554 4689999999999999993
No 121
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=79.12 E-value=3.3 Score=34.81 Aligned_cols=76 Identities=20% Similarity=0.333 Sum_probs=46.9
Q ss_pred CcceeEEE-EeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEE-EecccchhhHhhhcCChhhhccccceEEcccchHH
Q psy5241 3 QAQFDVIL-CLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLI-LEPQGFQSYKKKRKLTDTIWRNFQAIEFFPHHFTE 80 (132)
Q Consensus 3 ~~~fDvIl-clSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~li-LEpQpWksY~r~~kl~~~~~~~~~~L~lrP~~f~~ 80 (132)
+..||+|+ ||-| .- -.-|...++.|+.+|+|||+.| +-|=-|-.-.. ..++=.+|+|-=|++.+
T Consensus 163 ~~~~d~VvT~FFI------DT-A~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~-------~~~~~~sveLs~eEi~~ 228 (270)
T PF07942_consen 163 KGSFDVVVTCFFI------DT-AENIIEYIETIEHLLKPGGYWINFGPLLYHFEPM-------SIPNEMSVELSLEEIKE 228 (270)
T ss_pred CCcccEEEEEEEe------ec-hHHHHHHHHHHHHHhccCCEEEecCCccccCCCC-------CCCCCcccCCCHHHHHH
Confidence 46788765 4433 11 3458999999999999999877 22221211100 01122347888788877
Q ss_pred HHHhccCCeeEEE
Q psy5241 81 YLLSEVGFTKCET 93 (132)
Q Consensus 81 yLl~~vGF~~~~~ 93 (132)
.. +.+||+...+
T Consensus 229 l~-~~~GF~~~~~ 240 (270)
T PF07942_consen 229 LI-EKLGFEIEKE 240 (270)
T ss_pred HH-HHCCCEEEEE
Confidence 44 5689998764
No 122
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=78.72 E-value=1.1 Score=37.30 Aligned_cols=61 Identities=23% Similarity=0.280 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEecccc-hhhHhhhcCChhhhccccceEEcccchHHHHHhccCCeeEEE
Q psy5241 25 SGIKRVFMRMYAQLREGGVLILEPQGF-QSYKKKRKLTDTIWRNFQAIEFFPHHFTEYLLSEVGFTKCET 93 (132)
Q Consensus 25 ~GL~~ff~r~~~~L~pGg~liLEpQpW-ksY~r~~kl~~~~~~~~~~L~lrP~~f~~yLl~~vGF~~~~~ 93 (132)
+--++.++++.++|||||+||+--=-= ..|. .+ ...|..+.+..+.+.+=|. +.||...+.
T Consensus 176 ~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~----vG---~~~F~~l~l~ee~v~~al~-~aG~~i~~~ 237 (256)
T PF01234_consen 176 DEYRRALRNISSLLKPGGHLILAGVLGSTYYM----VG---GHKFPCLPLNEEFVREALE-EAGFDIEDL 237 (256)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEEEESS-SEEE----ET---TEEEE---B-HHHHHHHHH-HTTEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEcCceeEE----EC---CEecccccCCHHHHHHHHH-HcCCEEEec
Confidence 457888999999999999999853211 1121 01 1237778888888888665 569986664
No 123
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=78.45 E-value=1.8 Score=36.50 Aligned_cols=36 Identities=25% Similarity=0.420 Sum_probs=29.9
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEe
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILE 47 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLE 47 (132)
+.+||+|+| |--.+=|..+...+.+.|+|||+|||-
T Consensus 223 ~~~~dlvvA---------NI~~~vL~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 223 EGKFDLVVA---------NILADVLLELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp CS-EEEEEE---------ES-HHHHHHHHHHCHHHEEEEEEEEEE
T ss_pred cccCCEEEE---------CCCHHHHHHHHHHHHHhhCCCCEEEEc
Confidence 368999997 666788999999999999999999984
No 124
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=78.41 E-value=4.2 Score=31.18 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=22.0
Q ss_pred HHHHHHHHHhhcCCcEEEEecccchhhH
Q psy5241 28 KRVFMRMYAQLREGGVLILEPQGFQSYK 55 (132)
Q Consensus 28 ~~ff~r~~~~L~pGg~liLEpQpWksY~ 55 (132)
..+++.+++.|+|||.|++.- .+..|.
T Consensus 112 ~~~l~~~~r~LkpgG~l~~~t-d~~~~~ 138 (194)
T TIGR00091 112 PHFLKEYANVLKKGGVIHFKT-DNEPLF 138 (194)
T ss_pred HHHHHHHHHHhCCCCEEEEEe-CCHHHH
Confidence 579999999999999999876 455454
No 125
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=78.05 E-value=2.4 Score=37.87 Aligned_cols=66 Identities=27% Similarity=0.246 Sum_probs=44.2
Q ss_pred ccCCcHHHH---HHHHHHHHhhcCCcEEEEecccchhhHhhhcCChhhhccccceEEcccchHHHHHhccCCeeEEEcCC
Q psy5241 20 LNWGDSGIK---RVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDTIWRNFQAIEFFPHHFTEYLLSEVGFTKCETLGS 96 (132)
Q Consensus 20 LN~GD~GL~---~ff~r~~~~L~pGg~liLEpQpWksY~r~~kl~~~~~~~~~~L~lrP~~f~~yLl~~vGF~~~~~l~~ 96 (132)
|..|++|+. ++++.+.+.|+|||.+++|--. . . ++...+.+. +.||..++...
T Consensus 350 L~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~-~---Q------------------~e~V~~ll~-~~Gf~~v~v~k- 405 (423)
T PRK14966 350 LTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF-D---Q------------------GAAVRGVLA-ENGFSGVETLP- 405 (423)
T ss_pred hhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc-c---H------------------HHHHHHHHH-HCCCcEEEEEE-
Confidence 567888876 7777778899999999998732 1 1 112445444 45887766643
Q ss_pred CCCCCCCCCcceEEEE
Q psy5241 97 PLHPSKGFQRPIKMFT 112 (132)
Q Consensus 97 ~~~~~~gf~RpI~lf~ 112 (132)
.-.|.+|-|...+
T Consensus 406 ---Dl~G~dR~v~~~~ 418 (423)
T PRK14966 406 ---DLAGLDRVTLGKY 418 (423)
T ss_pred ---cCCCCcEEEEEEE
Confidence 2478888776543
No 126
>PRK05785 hypothetical protein; Provisional
Probab=77.70 E-value=3.7 Score=32.56 Aligned_cols=39 Identities=18% Similarity=0.220 Sum_probs=27.8
Q ss_pred CCcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEe
Q psy5241 2 EQAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILE 47 (132)
Q Consensus 2 ~~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLE 47 (132)
..+.||+|+|..+.-| .- -+.++++.+++.|+|+ ..|||
T Consensus 107 ~d~sfD~v~~~~~l~~----~~--d~~~~l~e~~RvLkp~-~~ile 145 (226)
T PRK05785 107 RDKSFDVVMSSFALHA----SD--NIEKVIAEFTRVSRKQ-VGFIA 145 (226)
T ss_pred CCCCEEEEEecChhhc----cC--CHHHHHHHHHHHhcCc-eEEEE
Confidence 3568999999876422 22 3688999999999994 44554
No 127
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=75.62 E-value=4.5 Score=34.64 Aligned_cols=37 Identities=30% Similarity=0.372 Sum_probs=30.4
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEec
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEP 48 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEp 48 (132)
...||+|.| |-=-+=|+++-..++..|+|||.|||--
T Consensus 227 ~~~~DvIVA---------NILA~vl~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 227 NGPFDVIVA---------NILAEVLVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred cCcccEEEe---------hhhHHHHHHHHHHHHHHcCCCceEEEEe
Confidence 357999988 4445667899999999999999999854
No 128
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=75.36 E-value=2.8 Score=36.56 Aligned_cols=43 Identities=30% Similarity=0.319 Sum_probs=30.7
Q ss_pred cceeEEEEe----eeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEe
Q psy5241 4 AQFDVILCL----SVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILE 47 (132)
Q Consensus 4 ~~fDvIlcl----SVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLE 47 (132)
.+||+|+|= +-+| -.+..+-.|+..+++....+|+|||+|++=
T Consensus 292 ~~fDlVilDPP~f~~~k-~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~ 338 (396)
T PRK15128 292 EKFDVIVMDPPKFVENK-SQLMGACRGYKDINMLAIQLLNPGGILLTF 338 (396)
T ss_pred CCCCEEEECCCCCCCCh-HHHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 479999974 2222 122233457888889999999999999973
No 129
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=75.33 E-value=4.2 Score=32.95 Aligned_cols=18 Identities=33% Similarity=0.685 Sum_probs=16.5
Q ss_pred HHHHHHHHHhhcCCcEEE
Q psy5241 28 KRVFMRMYAQLREGGVLI 45 (132)
Q Consensus 28 ~~ff~r~~~~L~pGg~li 45 (132)
+.+++.+++.|+|||+||
T Consensus 179 ~~iL~~a~~~lkpgG~lv 196 (264)
T TIGR00446 179 KELIDSAFDALKPGGVLV 196 (264)
T ss_pred HHHHHHHHHhcCCCCEEE
Confidence 569999999999999998
No 130
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=75.26 E-value=4 Score=33.31 Aligned_cols=74 Identities=18% Similarity=0.314 Sum_probs=45.7
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccchhhHhhhcCChhhhccccceEEcccchHHHH
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDTIWRNFQAIEFFPHHFTEYL 82 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpWksY~r~~kl~~~~~~~~~~L~lrP~~f~~yL 82 (132)
.+.||+||. -+.-.=-..+|..+.++|+|||++|+--=-|.-+--... ...+++..-+-..|.+++
T Consensus 130 ~~~fDliFI---------DadK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~-----~~~~~~~~~~~~~~~~~~ 195 (219)
T COG4122 130 DGSFDLVFI---------DADKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPS-----IRDARTQVRGVRDFNDYL 195 (219)
T ss_pred CCCccEEEE---------eCChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCcc-----chhHHHHHHHHHHHHHHH
Confidence 367888774 445555789999999999999999987666654321100 011112221223467777
Q ss_pred HhccCCee
Q psy5241 83 LSEVGFTK 90 (132)
Q Consensus 83 l~~vGF~~ 90 (132)
.+.-++..
T Consensus 196 ~~~~~~~t 203 (219)
T COG4122 196 LEDPRYDT 203 (219)
T ss_pred hhCcCcee
Confidence 77767764
No 131
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=74.61 E-value=5 Score=34.71 Aligned_cols=20 Identities=20% Similarity=0.571 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhcCCcEEEEe
Q psy5241 28 KRVFMRMYAQLREGGVLILE 47 (132)
Q Consensus 28 ~~ff~r~~~~L~pGg~liLE 47 (132)
+++++.++..|+|||.||.-
T Consensus 348 ~~lL~~a~~~LkpgG~lvys 367 (426)
T TIGR00563 348 SEILDAIWPLLKTGGTLVYA 367 (426)
T ss_pred HHHHHHHHHhcCCCcEEEEE
Confidence 67899999999999999954
No 132
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=74.31 E-value=4.8 Score=34.98 Aligned_cols=43 Identities=19% Similarity=0.245 Sum_probs=28.7
Q ss_pred cceeEEEE----eeeeee-----eeccCCcHH-------HHHHHHHHHHhhcCCcEEEE
Q psy5241 4 AQFDVILC----LSVTKW-----FHLNWGDSG-------IKRVFMRMYAQLREGGVLIL 46 (132)
Q Consensus 4 ~~fDvIlc----lSVTKW-----IHLN~GD~G-------L~~ff~r~~~~L~pGg~liL 46 (132)
+.||.|+| .+.-.+ ++...-.+. .++++..++..|+|||.||.
T Consensus 324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvy 382 (434)
T PRK14901 324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVY 382 (434)
T ss_pred ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 57999995 222121 222333344 36889999999999999985
No 133
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=73.98 E-value=2.9 Score=34.55 Aligned_cols=81 Identities=26% Similarity=0.420 Sum_probs=45.5
Q ss_pred CCcceeE-EEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccchhhHhhhcCChhhhccccceEEcccchHH
Q psy5241 2 EQAQFDV-ILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDTIWRNFQAIEFFPHHFTE 80 (132)
Q Consensus 2 ~~~~fDv-IlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpWksY~r~~kl~~~~~~~~~~L~lrP~~f~~ 80 (132)
+.+..|| |+|||.- | .-+..|++..++.|+|||.|.+-- ....|. .+++|.+
T Consensus 119 ~~~svDv~VfcLSLM-------G-Tn~~~fi~EA~RvLK~~G~L~IAE---------------V~SRf~----~~~~F~~ 171 (219)
T PF05148_consen 119 EDESVDVAVFCLSLM-------G-TNWPDFIREANRVLKPGGILKIAE---------------VKSRFE----NVKQFIK 171 (219)
T ss_dssp -TT-EEEEEEES----------S-S-HHHHHHHHHHHEEEEEEEEEEE---------------EGGG-S-----HHHHHH
T ss_pred CCCceeEEEEEhhhh-------C-CCcHHHHHHHHheeccCcEEEEEE---------------ecccCc----CHHHHHH
Confidence 3455665 7899963 1 225679999999999999987632 111222 2356777
Q ss_pred HHHhccCCeeEEEcCCCCCCCCCCCcceEEEEcCCC
Q psy5241 81 YLLSEVGFTKCETLGSPLHPSKGFQRPIKMFTKGSK 116 (132)
Q Consensus 81 yLl~~vGF~~~~~l~~~~~~~~gf~RpI~lf~K~~~ 116 (132)
- ++.+||+....-. +++=| -+..|+|...
T Consensus 172 ~-~~~~GF~~~~~d~----~n~~F--~~f~F~K~~~ 200 (219)
T PF05148_consen 172 A-LKKLGFKLKSKDE----SNKHF--VLFEFKKIRK 200 (219)
T ss_dssp H-HHCTTEEEEEEE------STTE--EEEEEEE-SS
T ss_pred H-HHHCCCeEEeccc----CCCeE--EEEEEEEcCc
Confidence 4 5689999776422 23333 3556667664
No 134
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=73.82 E-value=2.5 Score=28.75 Aligned_cols=44 Identities=20% Similarity=0.160 Sum_probs=28.4
Q ss_pred CCcceeEEEEeeeeeeeec----cCCcHHHHHHHHHHHHhhcCCcEEEEe
Q psy5241 2 EQAQFDVILCLSVTKWFHL----NWGDSGIKRVFMRMYAQLREGGVLILE 47 (132)
Q Consensus 2 ~~~~fDvIlclSVTKWIHL----N~GD~GL~~ff~r~~~~L~pGg~liLE 47 (132)
..++||+|+|---- ... +..++-...|++++.+.|+|||.+++-
T Consensus 67 ~~~~~D~Iv~npP~--~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 67 PDGKFDLIVTNPPY--GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp TTT-EEEEEE--ST--TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCceeEEEEECCCC--ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 45789999884322 111 111225679999999999999999874
No 135
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=73.74 E-value=4.4 Score=35.10 Aligned_cols=77 Identities=19% Similarity=0.218 Sum_probs=51.0
Q ss_pred eeccCCcHH-HHHHHHHHHHhhcCCcEEEEecccchhhHh--hhcCChhhhccccceEEcccchHHHHHhccCCeeEEEc
Q psy5241 18 FHLNWGDSG-IKRVFMRMYAQLREGGVLILEPQGFQSYKK--KRKLTDTIWRNFQAIEFFPHHFTEYLLSEVGFTKCETL 94 (132)
Q Consensus 18 IHLN~GD~G-L~~ff~r~~~~L~pGg~liLEpQpWksY~r--~~kl~~~~~~~~~~L~lrP~~f~~yLl~~vGF~~~~~l 94 (132)
+|=..+|.- +++-++-+++.+.|||+||.--|||-.=-+ ++-++.+-.-.-=-.+-|...=.+=|.+..||+.+...
T Consensus 218 L~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K~~q~ 297 (311)
T PF12147_consen 218 LYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEKIDQR 297 (311)
T ss_pred chhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCchhhhe
Confidence 355678877 555899999999999999999999987654 34443221000112445565333447777899876643
No 136
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=70.00 E-value=5.6 Score=34.84 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhcCCcEEEEeccc
Q psy5241 28 KRVFMRMYAQLREGGVLILEPQG 50 (132)
Q Consensus 28 ~~ff~r~~~~L~pGg~liLEpQp 50 (132)
++++..+++.|+|||.||...=.
T Consensus 346 ~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 346 LRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred HHHHHHHHHhcCCCCEEEEEECC
Confidence 56689999999999999987643
No 137
>PLN02476 O-methyltransferase
Probab=69.72 E-value=8.1 Score=32.51 Aligned_cols=73 Identities=14% Similarity=0.235 Sum_probs=47.5
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccchhhHhhhcCChhhhccccceEEcccchHHHHH
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDTIWRNFQAIEFFPHHFTEYLL 83 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpWksY~r~~kl~~~~~~~~~~L~lrP~~f~~yLl 83 (132)
+.||.|+.= .-......+|..+..+|+|||++|+.-=-|+..--....... +.. +-..|.+++.
T Consensus 193 ~~FD~VFID---------a~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~-----~t~--~ir~fn~~v~ 256 (278)
T PLN02476 193 SSYDFAFVD---------ADKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDA-----KTI--SIRNFNKKLM 256 (278)
T ss_pred CCCCEEEEC---------CCHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCH-----HHH--HHHHHHHHHh
Confidence 578988853 233678999999999999999999998888765421100000 011 1235777777
Q ss_pred hccCCeeEE
Q psy5241 84 SEVGFTKCE 92 (132)
Q Consensus 84 ~~vGF~~~~ 92 (132)
++=.|..+-
T Consensus 257 ~d~~~~~~l 265 (278)
T PLN02476 257 DDKRVSISM 265 (278)
T ss_pred hCCCEEEEE
Confidence 766666543
No 138
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=69.26 E-value=5.6 Score=33.56 Aligned_cols=42 Identities=26% Similarity=0.515 Sum_probs=31.7
Q ss_pred CcceeEEEE----eeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEec
Q psy5241 3 QAQFDVILC----LSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEP 48 (132)
Q Consensus 3 ~~~fDvIlc----lSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEp 48 (132)
..+||+|+| |+=++|- + ..+.++++.++.++|+|||+|+.=.
T Consensus 193 ~~~fD~IIlDPPsF~k~~~~-~---~~~y~~L~~~a~~ll~~gG~l~~~s 238 (286)
T PF10672_consen 193 GGRFDLIILDPPSFAKSKFD-L---ERDYKKLLRRAMKLLKPGGLLLTCS 238 (286)
T ss_dssp TT-EEEEEE--SSEESSTCE-H---HHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCCCEEEECCCCCCCCHHH-H---HHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 358999997 5555542 2 3578899999999999999998754
No 139
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=69.24 E-value=6.5 Score=31.28 Aligned_cols=71 Identities=20% Similarity=0.292 Sum_probs=46.6
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccchhhHhhhc-CChhhhccccceEEcccchHHHH
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRK-LTDTIWRNFQAIEFFPHHFTEYL 82 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpWksY~r~~k-l~~~~~~~~~~L~lrP~~f~~yL 82 (132)
+.||+||.= ..-..-..+|..+..+|+|||++|+--=-|....-... ..+.... -..|.+++
T Consensus 120 ~~fD~VFiD---------a~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~--------ir~f~~~i 182 (205)
T PF01596_consen 120 GQFDFVFID---------ADKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVA--------IREFNEYI 182 (205)
T ss_dssp TSEEEEEEE---------STGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHH--------HHHHHHHH
T ss_pred CceeEEEEc---------ccccchhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHH--------HHHHHHHH
Confidence 479999853 34456788999999999999999999988877543210 0111000 22477777
Q ss_pred HhccCCeeE
Q psy5241 83 LSEVGFTKC 91 (132)
Q Consensus 83 l~~vGF~~~ 91 (132)
.++=-|+.+
T Consensus 183 ~~d~~~~~~ 191 (205)
T PF01596_consen 183 ANDPRFETV 191 (205)
T ss_dssp HH-TTEEEE
T ss_pred HhCCCeeEE
Confidence 776566655
No 140
>KOG3045|consensus
Probab=68.82 E-value=5.4 Score=34.62 Aligned_cols=37 Identities=27% Similarity=0.575 Sum_probs=28.5
Q ss_pred CCcceeE-EEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEE
Q psy5241 2 EQAQFDV-ILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLIL 46 (132)
Q Consensus 2 ~~~~fDv-IlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liL 46 (132)
+.+..|| |+|||.- -.-|..|++.+++.|+|||.|-+
T Consensus 225 ~d~svDvaV~CLSLM--------gtn~~df~kEa~RiLk~gG~l~I 262 (325)
T KOG3045|consen 225 EDESVDVAVFCLSLM--------GTNLADFIKEANRILKPGGLLYI 262 (325)
T ss_pred ccCcccEEEeeHhhh--------cccHHHHHHHHHHHhccCceEEE
Confidence 4455665 7899963 23478999999999999999865
No 141
>KOG1975|consensus
Probab=67.69 E-value=5.2 Score=35.50 Aligned_cols=45 Identities=22% Similarity=0.447 Sum_probs=34.9
Q ss_pred CcceeEEEEeeeeeeeeccCCc-HHHHHHHHHHHHhhcCCcEEEEeccc
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGD-SGIKRVFMRMYAQLREGGVLILEPQG 50 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD-~GL~~ff~r~~~~L~pGg~liLEpQp 50 (132)
.++||||-|==. .|-.+-+ +-.+.+++-++..|+|||+||---..
T Consensus 194 dp~fDivScQF~---~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 194 DPRFDIVSCQFA---FHYAFETEESARIALRNVAKCLKPGGVFIGTIPD 239 (389)
T ss_pred CCCcceeeeeee---EeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCc
Confidence 345999977322 4777766 46888999999999999999987654
No 142
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=66.42 E-value=7.4 Score=33.15 Aligned_cols=32 Identities=38% Similarity=0.658 Sum_probs=24.0
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEe
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILE 47 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLE 47 (132)
..||+|++- .|+..+...+.+.|+|||.+++.
T Consensus 148 ~~fD~Ii~~------------~g~~~ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 148 APYDVIFVT------------VGVDEVPETWFTQLKEGGRVIVP 179 (322)
T ss_pred CCccEEEEC------------CchHHhHHHHHHhcCCCCEEEEE
Confidence 458888863 35555666788899999999883
No 143
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=66.05 E-value=7.2 Score=31.43 Aligned_cols=34 Identities=24% Similarity=0.504 Sum_probs=29.4
Q ss_pred ceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEec
Q psy5241 5 QFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEP 48 (132)
Q Consensus 5 ~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEp 48 (132)
.||.|| ++.| .++..++..+...|+|||++|+-.
T Consensus 102 ~~daiF---------IGGg-~~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 102 SPDAIF---------IGGG-GNIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred CCCEEE---------ECCC-CCHHHHHHHHHHHcCcCCeEEEEe
Confidence 577776 4667 999999999999999999999865
No 144
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=65.21 E-value=9.1 Score=33.84 Aligned_cols=43 Identities=21% Similarity=0.236 Sum_probs=34.7
Q ss_pred cceeEEEE----eeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEe
Q psy5241 4 AQFDVILC----LSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILE 47 (132)
Q Consensus 4 ~~fDvIlc----lSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLE 47 (132)
.+||||++ |+=+|=-= ..+..+...+...+.+.|+|||++++=
T Consensus 289 ~~fDlIilDPPsF~r~k~~~-~~~~rdy~~l~~~~~~iL~pgG~l~~~ 335 (393)
T COG1092 289 EKFDLIILDPPSFARSKKQE-FSAQRDYKDLNDLALRLLAPGGTLVTS 335 (393)
T ss_pred CcccEEEECCcccccCcccc-hhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 48999986 66555433 667788899999999999999999974
No 145
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=64.85 E-value=11 Score=31.02 Aligned_cols=43 Identities=16% Similarity=0.219 Sum_probs=33.7
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccchhhH
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYK 55 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpWksY~ 55 (132)
+.||+||.= +--+.-..+|..+..+|+|||++|+.-=-|...-
T Consensus 155 ~~fD~iFiD---------adK~~Y~~y~~~~l~ll~~GGviv~DNvl~~G~v 197 (247)
T PLN02589 155 GTFDFIFVD---------ADKDNYINYHKRLIDLVKVGGVIGYDNTLWNGSV 197 (247)
T ss_pred CcccEEEec---------CCHHHhHHHHHHHHHhcCCCeEEEEcCCCCCCcc
Confidence 578888753 3345567889999999999999999888887653
No 146
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=63.76 E-value=7.1 Score=33.88 Aligned_cols=30 Identities=17% Similarity=0.167 Sum_probs=27.5
Q ss_pred eeccCCcHHHHHHHHHHHHhhcCCcEEEEe
Q psy5241 18 FHLNWGDSGIKRVFMRMYAQLREGGVLILE 47 (132)
Q Consensus 18 IHLN~GD~GL~~ff~r~~~~L~pGg~liLE 47 (132)
|++|.=-+-|++++....++|+|||+|++=
T Consensus 214 I~VNdEL~~L~~~L~~a~~~L~~gGRl~VI 243 (314)
T COG0275 214 IYVNDELEELEEALEAALDLLKPGGRLAVI 243 (314)
T ss_pred eeehhHHHHHHHHHHHHHHhhCCCcEEEEE
Confidence 778888889999999999999999999885
No 147
>KOG2361|consensus
Probab=63.47 E-value=11 Score=32.09 Aligned_cols=104 Identities=21% Similarity=0.335 Sum_probs=57.3
Q ss_pred CCcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccchhhH--hhh-cCChhhhccc----cce--E
Q psy5241 2 EQAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYK--KKR-KLTDTIWRNF----QAI--E 72 (132)
Q Consensus 2 ~~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpWksY~--r~~-kl~~~~~~~~----~~L--~ 72 (132)
+.+.+|+|.|-=|.==| +-+-..+.+..++.+|+|||.|++-- .-.|- ..| +.+.-+-.|| +.. -
T Consensus 141 ~~~svD~it~IFvLSAi----~pek~~~a~~nl~~llKPGG~llfrD--Yg~~DlaqlRF~~~~~i~~nfYVRgDGT~~Y 214 (264)
T KOG2361|consen 141 EEGSVDIITLIFVLSAI----HPEKMQSVIKNLRTLLKPGGSLLFRD--YGRYDLAQLRFKKGQCISENFYVRGDGTRAY 214 (264)
T ss_pred CcCccceEEEEEEEecc----ChHHHHHHHHHHHHHhCCCcEEEEee--cccchHHHHhccCCceeecceEEccCCceee
Confidence 45667776554443334 45566778888899999999999853 22222 111 1222222232 222 2
Q ss_pred EcccchHHHHHhccCCeeEEEcCCCCCCCCCCCcceEEEEcCCCCCCC
Q psy5241 73 FFPHHFTEYLLSEVGFTKCETLGSPLHPSKGFQRPIKMFTKGSKRDSR 120 (132)
Q Consensus 73 lrP~~f~~yLl~~vGF~~~~~l~~~~~~~~gf~RpI~lf~K~~~~~~~ 120 (132)
+-++..-+-|-.+.||..++ ..-+|.+.+.|+++....+
T Consensus 215 fF~~eeL~~~f~~agf~~~~---------~~~~~rl~vNr~k~lkm~R 253 (264)
T KOG2361|consen 215 FFTEEELDELFTKAGFEEVQ---------LEVDCRLLVNRKKQLKMYR 253 (264)
T ss_pred eccHHHHHHHHHhcccchhc---------ccceeeeeeehhccCccce
Confidence 22333323244456997544 4467777888777655443
No 148
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=61.84 E-value=13 Score=28.17 Aligned_cols=38 Identities=24% Similarity=0.303 Sum_probs=28.2
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEE
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLIL 46 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liL 46 (132)
..+||+|++--|.=. ++-...|++.+..+|+|+|.+++
T Consensus 117 ~~~~D~IlasDv~Y~------~~~~~~L~~tl~~ll~~~~~vl~ 154 (173)
T PF10294_consen 117 PHSFDVILASDVLYD------EELFEPLVRTLKRLLKPNGKVLL 154 (173)
T ss_dssp -SSBSEEEEES--S-------GGGHHHHHHHHHHHBTT-TTEEE
T ss_pred cccCCEEEEecccch------HHHHHHHHHHHHHHhCCCCEEEE
Confidence 457999999988743 67888999999999999888555
No 149
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=61.56 E-value=2.9 Score=38.37 Aligned_cols=44 Identities=20% Similarity=0.428 Sum_probs=32.1
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccch
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQ 52 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpWk 52 (132)
..||+|=|-... .+|.+.+- .++-.+-+.|||||+||+-.+|=.
T Consensus 180 ~~fDmvHcsrc~----i~W~~~~g-~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 180 NAFDMVHCSRCL----IPWHPNDG-FLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred cchhhhhccccc----ccchhccc-ceeehhhhhhccCceEEecCCccc
Confidence 468888776654 35555432 377789999999999999998843
No 150
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=61.36 E-value=6.4 Score=33.61 Aligned_cols=30 Identities=17% Similarity=0.078 Sum_probs=25.6
Q ss_pred eeccCCcHHHHHHHHHHHHhhcCCcEEEEe
Q psy5241 18 FHLNWGDSGIKRVFMRMYAQLREGGVLILE 47 (132)
Q Consensus 18 IHLN~GD~GL~~ff~r~~~~L~pGg~liLE 47 (132)
|..|.==+-|.+++..+.+.|+|||+|++-
T Consensus 210 I~VN~EL~~L~~~L~~~~~~L~~gGrl~VI 239 (305)
T TIGR00006 210 IYVNDELEELEEALQFAPNLLAPGGRLSII 239 (305)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 455666678999999999999999999985
No 151
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=61.06 E-value=6.9 Score=31.50 Aligned_cols=45 Identities=31% Similarity=0.502 Sum_probs=35.1
Q ss_pred cceeEEEEeeeeeeeeccC-Cc----HHHHHHHHHHHHhhcCCcEEEEec
Q psy5241 4 AQFDVILCLSVTKWFHLNW-GD----SGIKRVFMRMYAQLREGGVLILEP 48 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~-GD----~GL~~ff~r~~~~L~pGg~liLEp 48 (132)
..||++.|||..-=+=|.. || .|=.+-.+++-..|+|||.|+|--
T Consensus 62 ~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~v 111 (177)
T PF03269_consen 62 GSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGV 111 (177)
T ss_pred ccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEe
Confidence 5699999999977665542 43 466677888888999999999865
No 152
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=60.08 E-value=7.3 Score=33.02 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=25.9
Q ss_pred eeccCCcHHHHHHHHHHHHhhcCCcEEEEe
Q psy5241 18 FHLNWGDSGIKRVFMRMYAQLREGGVLILE 47 (132)
Q Consensus 18 IHLN~GD~GL~~ff~r~~~~L~pGg~liLE 47 (132)
|-.|.=-+-|++++..+.+.|+|||+|++-
T Consensus 206 I~VN~El~~L~~~L~~~~~~L~~gGrl~vi 235 (296)
T PRK00050 206 IEVNDELEELERALEAALDLLKPGGRLAVI 235 (296)
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 345666788999999999999999999986
No 153
>PHA03411 putative methyltransferase; Provisional
Probab=57.47 E-value=10 Score=32.15 Aligned_cols=72 Identities=15% Similarity=0.263 Sum_probs=43.3
Q ss_pred cceeEEEE------eeee---eeeeccCCcHH-----HHHHHHHHHHhhcCCcEEEEecccchhhHhhhcCChhhhcccc
Q psy5241 4 AQFDVILC------LSVT---KWFHLNWGDSG-----IKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDTIWRNFQ 69 (132)
Q Consensus 4 ~~fDvIlc------lSVT---KWIHLN~GD~G-----L~~ff~r~~~~L~pGg~liLEpQpWksY~r~~kl~~~~~~~~~ 69 (132)
.+||+|+| +.+. .|.-...|..| +.+|++.+...|+|+|.+++-...=.-|
T Consensus 125 ~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y--------------- 189 (279)
T PHA03411 125 EKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYY--------------- 189 (279)
T ss_pred CCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccc---------------
Confidence 47999998 3343 33334444433 3578889999999999877762222222
Q ss_pred ceEEcccchHHHHHhccCCeeE
Q psy5241 70 AIEFFPHHFTEYLLSEVGFTKC 91 (132)
Q Consensus 70 ~L~lrP~~f~~yLl~~vGF~~~ 91 (132)
.-.+-|+....+| ++.||...
T Consensus 190 ~~sl~~~~y~~~l-~~~g~~~~ 210 (279)
T PHA03411 190 DGTMKSNKYLKWS-KQTGLVTY 210 (279)
T ss_pred cccCCHHHHHHHH-HhcCcEec
Confidence 2234455566644 55688654
No 154
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=56.27 E-value=3.7 Score=32.79 Aligned_cols=36 Identities=25% Similarity=0.336 Sum_probs=22.5
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEeccc
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQG 50 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQp 50 (132)
...||.|++ +.+-+ ..=..+.++|++||+||.=-.+
T Consensus 139 ~apfD~I~v---------~~a~~---~ip~~l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 139 EAPFDRIIV---------TAAVP---EIPEALLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp G-SEEEEEE---------SSBBS---S--HHHHHTEEEEEEEEEEESS
T ss_pred CCCcCEEEE---------eeccc---hHHHHHHHhcCCCcEEEEEEcc
Confidence 456898765 33333 3334567899999999985544
No 155
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=56.08 E-value=30 Score=30.37 Aligned_cols=62 Identities=18% Similarity=0.251 Sum_probs=45.6
Q ss_pred cHHHHHHHHHHHHhhcCCcEEEEecccchhhHhhhcCChhhhccccceEEcccchHHHHHhccCCeeEEEcCCCCCCCCC
Q psy5241 24 DSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDTIWRNFQAIEFFPHHFTEYLLSEVGFTKCETLGSPLHPSKG 103 (132)
Q Consensus 24 D~GL~~ff~r~~~~L~pGg~liLEpQpWksY~r~~kl~~~~~~~~~~L~lrP~~f~~yLl~~vGF~~~~~l~~~~~~~~g 103 (132)
|+=+..+|..+++.|++||++++-.. ....+.+ .+.||........-. ..+
T Consensus 286 ~~Ly~~~le~~~evLk~gG~~vf~~p--------------------------~~~~~~~-~~~~f~v~~~~~~~~--H~s 336 (347)
T COG1041 286 DELYEEALESASEVLKPGGRIVFAAP--------------------------RDPRHEL-EELGFKVLGRFTMRV--HGS 336 (347)
T ss_pred HHHHHHHHHHHHHHhhcCcEEEEecC--------------------------CcchhhH-hhcCceEEEEEEEee--cCc
Confidence 45578899999999999999888653 1122434 457999888766433 478
Q ss_pred CCcceEEEEcC
Q psy5241 104 FQRPIKMFTKG 114 (132)
Q Consensus 104 f~RpI~lf~K~ 114 (132)
.-|-|+++++.
T Consensus 337 LtR~i~v~~~~ 347 (347)
T COG1041 337 LTRVIYVVRKK 347 (347)
T ss_pred eEEEEEEEecC
Confidence 88999998873
No 156
>PF15514 ThaI: Restriction endonuclease ThaI; PDB: 3NDH_B.
Probab=54.95 E-value=5.8 Score=31.88 Aligned_cols=29 Identities=34% Similarity=0.769 Sum_probs=16.6
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHH-----HHHHHHHHHhh
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGI-----KRVFMRMYAQL 38 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL-----~~ff~r~~~~L 38 (132)
+++||.||+ |+|||..|- -.+=.++++.+
T Consensus 109 ~p~~d~il~-------hinw~s~g~~yyip~~vq~~ifd~~ 142 (202)
T PF15514_consen 109 HPRFDMILV-------HINWSSSGGVYYIPDYVQQNIFDEI 142 (202)
T ss_dssp ---SEEEEE-------EE-TTSEEEEEEE-HHHHHHHHHHH
T ss_pred CccccEEEE-------EecccccCceEEccHHHHHHHHHHh
Confidence 578999984 999998762 23334555555
No 157
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=52.29 E-value=12 Score=27.83 Aligned_cols=71 Identities=20% Similarity=0.228 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhhcCCcEEEEecccchhhHhhhcCChhhhccccceEEcccchHHHHHhccC-CeeEEEcCCC------C
Q psy5241 26 GIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDTIWRNFQAIEFFPHHFTEYLLSEVG-FTKCETLGSP------L 98 (132)
Q Consensus 26 GL~~ff~r~~~~L~pGg~liLEpQpWksY~r~~kl~~~~~~~~~~L~lrP~~f~~yLl~~vG-F~~~~~l~~~------~ 98 (132)
-+..+|+.+++.|+|||.+++--. +..... .....+.+..| |.....+.-. .
T Consensus 34 ~~~~~~~~~~rvLk~~g~~~i~~~-~~~~~~--------------------~~~~~~~~~~g~~~~~~~iiW~K~~~~~~ 92 (231)
T PF01555_consen 34 WMEEWLKECYRVLKPGGSIFIFID-DREIAG--------------------FLFELALEIFGGFFLRNEIIWNKPNGMPK 92 (231)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEE--CCEECT--------------------HHHHHHHHHHTT-EEEEEEEEE-SSSTTS
T ss_pred HHHHHHHHHHhhcCCCeeEEEEec-chhhhH--------------------HHHHHHHHHhhhhheeccceeEecCcccc
Confidence 478899999999999999998752 222111 23344555567 8777655411 1
Q ss_pred CCCCCCC---cceEEEEcCCCC
Q psy5241 99 HPSKGFQ---RPIKMFTKGSKR 117 (132)
Q Consensus 99 ~~~~gf~---RpI~lf~K~~~~ 117 (132)
.....|. -.|++|.|....
T Consensus 93 ~~~~~~~~~~E~il~~~K~~~~ 114 (231)
T PF01555_consen 93 SNKKRFSNSHEYILVFSKDKKK 114 (231)
T ss_dssp STCCS-B--EEEEEEEESSTT-
T ss_pred ccccccccchhhhhcccccccc
Confidence 1111342 468899987776
No 158
>KOG1661|consensus
Probab=52.09 E-value=12 Score=31.36 Aligned_cols=36 Identities=28% Similarity=0.450 Sum_probs=27.4
Q ss_pred CCcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecc
Q psy5241 2 EQAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQ 49 (132)
Q Consensus 2 ~~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQ 49 (132)
+..+||.|.| . ++-...-+++-++|+|||.+|+-+=
T Consensus 159 e~a~YDaIhv---------G---Aaa~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 159 EQAPYDAIHV---------G---AAASELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred ccCCcceEEE---------c---cCccccHHHHHHhhccCCeEEEeec
Confidence 4567888655 3 5566677888899999999998764
No 159
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=51.09 E-value=9.2 Score=32.70 Aligned_cols=75 Identities=20% Similarity=0.364 Sum_probs=51.0
Q ss_pred CCcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccchhhHhhhcCChhhhccccceEEccc----c
Q psy5241 2 EQAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDTIWRNFQAIEFFPH----H 77 (132)
Q Consensus 2 ~~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpWksY~r~~kl~~~~~~~~~~L~lrP~----~ 77 (132)
+.++||+|.+--|.++|- -|..+|.-+..+|+|||+|+.--.. .-.+ ....++|. +
T Consensus 185 ~~er~DLi~AaDVl~YlG------~Le~~~~~aa~~L~~gGlfaFSvE~-------------l~~~-~~f~l~ps~RyAH 244 (287)
T COG4976 185 TQERFDLIVAADVLPYLG------ALEGLFAGAAGLLAPGGLFAFSVET-------------LPDD-GGFVLGPSQRYAH 244 (287)
T ss_pred cCCcccchhhhhHHHhhc------chhhHHHHHHHhcCCCceEEEEecc-------------cCCC-CCeecchhhhhcc
Confidence 457899999999999983 4888999999999999999864311 0011 22344442 3
Q ss_pred hHHH---HHhccCCeeEEEcCC
Q psy5241 78 FTEY---LLSEVGFTKCETLGS 96 (132)
Q Consensus 78 f~~y---Ll~~vGF~~~~~l~~ 96 (132)
=++| +++..||+.++.-.+
T Consensus 245 ~~~YVr~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 245 SESYVRALLAASGLEVIAIEDT 266 (287)
T ss_pred chHHHHHHHHhcCceEEEeecc
Confidence 3444 455789998776443
No 160
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=50.20 E-value=13 Score=25.20 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=21.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCcEEEE
Q psy5241 22 WGDSGIKRVFMRMYAQLREGGVLIL 46 (132)
Q Consensus 22 ~GD~GL~~ff~r~~~~L~pGg~liL 46 (132)
|=-++....|..+...|+|||++|+
T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 3348899999999999999999986
No 161
>KOG1540|consensus
Probab=50.16 E-value=24 Score=30.48 Aligned_cols=82 Identities=22% Similarity=0.511 Sum_probs=51.4
Q ss_pred CcceeE-EEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEE-E-----ecccchhhH------hhhcCChhh---hc
Q psy5241 3 QAQFDV-ILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLI-L-----EPQGFQSYK------KKRKLTDTI---WR 66 (132)
Q Consensus 3 ~~~fDv-IlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~li-L-----EpQpWksY~------r~~kl~~~~---~~ 66 (132)
...||. .++|+|--|.|. .+.++.+|+.|+|||+|. | |+|+-+-.. -...+.+.+ ++
T Consensus 175 d~s~D~yTiafGIRN~th~-------~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~ 247 (296)
T KOG1540|consen 175 DDSFDAYTIAFGIRNVTHI-------QKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRK 247 (296)
T ss_pred CCcceeEEEecceecCCCH-------HHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHh
Confidence 345664 578999999995 466788889999999875 3 333333222 134444433 33
Q ss_pred ccc----ceEEcc--cchHHHHHhccCCeeEE
Q psy5241 67 NFQ----AIEFFP--HHFTEYLLSEVGFTKCE 92 (132)
Q Consensus 67 ~~~----~L~lrP--~~f~~yLl~~vGF~~~~ 92 (132)
.|. +|+=-| ++|.. +.++.||.++.
T Consensus 248 sYqYLveSI~rfp~qe~f~~-miedaGF~~~~ 278 (296)
T KOG1540|consen 248 SYQYLVESIRRFPPQEEFAS-MIEDAGFSSVN 278 (296)
T ss_pred hhhhHHhhhhcCCCHHHHHH-HHHHcCCcccc
Confidence 443 333334 48888 55678999876
No 162
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=49.33 E-value=34 Score=27.69 Aligned_cols=95 Identities=24% Similarity=0.360 Sum_probs=53.0
Q ss_pred CcceeEEEE---eeeeeeeecc-----------CC-cHHHHHHHHHHHHhhcCCcEE-EEecccch---hhHhhhcCChh
Q psy5241 3 QAQFDVILC---LSVTKWFHLN-----------WG-DSGIKRVFMRMYAQLREGGVL-ILEPQGFQ---SYKKKRKLTDT 63 (132)
Q Consensus 3 ~~~fDvIlc---lSVTKWIHLN-----------~G-D~GL~~ff~r~~~~L~pGg~l-iLEpQpWk---sY~r~~kl~~~ 63 (132)
..+||+|++ |+..+|.+-. -. ..+=..|+.++.+.|++||.+ ++-|+.+= ++.+
T Consensus 123 ~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~------- 195 (311)
T PF02384_consen 123 NQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEK------- 195 (311)
T ss_dssp T--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHH-------
T ss_pred ccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHH-------
Confidence 357999988 4555453211 11 122234889999999999974 56676541 1211
Q ss_pred hhccccceEEcccchHHHHHhccCCeeEEEcCCCCCCCCCCCcceEEEEcCCCC
Q psy5241 64 IWRNFQAIEFFPHHFTEYLLSEVGFTKCETLGSPLHPSKGFQRPIKMFTKGSKR 117 (132)
Q Consensus 64 ~~~~~~~L~lrP~~f~~yLl~~vGF~~~~~l~~~~~~~~gf~RpI~lf~K~~~~ 117 (132)
.+.+||++..-.+.+-.|....-..++.+--|+++.|....
T Consensus 196 -------------~iR~~ll~~~~i~aVI~Lp~~~F~~t~v~t~ilil~k~~~~ 236 (311)
T PF02384_consen 196 -------------KIRKYLLENGYIEAVISLPSNLFKPTGVPTSILILNKKKPE 236 (311)
T ss_dssp -------------HHHHHHHHHEEEEEEEE--TTSSSSSSS-EEEEEEEESSSS
T ss_pred -------------HHHHHHHhhchhhEEeecccceecccCcCceEEEEeecccc
Confidence 25677877644444444432222347788888888887753
No 163
>PRK06853 indolepyruvate oxidoreductase subunit beta; Reviewed
Probab=49.28 E-value=23 Score=27.35 Aligned_cols=31 Identities=19% Similarity=0.488 Sum_probs=23.4
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEec
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEP 48 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEp 48 (132)
.+.|+++||+- ..+ .+....|+|||++|+..
T Consensus 67 ~~~D~lva~d~-------------~~~-~~~~~~lk~gg~ii~n~ 97 (197)
T PRK06853 67 GKADLLLAFEP-------------LEA-LRYLPYLKKGGKVVVNT 97 (197)
T ss_pred CCCCEEEEeCH-------------HHH-HHHHHhcCCCcEEEEEC
Confidence 37899999974 122 35667799999999986
No 164
>PLN02672 methionine S-methyltransferase
Probab=49.08 E-value=17 Score=36.11 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=24.9
Q ss_pred eeccC---CcHHH---HHHHHHHHHhhcCCcEEEEecc
Q psy5241 18 FHLNW---GDSGI---KRVFMRMYAQLREGGVLILEPQ 49 (132)
Q Consensus 18 IHLN~---GD~GL---~~ff~r~~~~L~pGg~liLEpQ 49 (132)
.=|.. |++|| +++.....+.|+|||.+++|--
T Consensus 242 ~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG 279 (1082)
T PLN02672 242 CALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMG 279 (1082)
T ss_pred ccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 44544 48887 6677777789999999999974
No 165
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=48.81 E-value=8.8 Score=32.97 Aligned_cols=30 Identities=20% Similarity=0.201 Sum_probs=25.3
Q ss_pred eeccCCcHHHHHHHHHHHHhhcCCcEEEEe
Q psy5241 18 FHLNWGDSGIKRVFMRMYAQLREGGVLILE 47 (132)
Q Consensus 18 IHLN~GD~GL~~ff~r~~~~L~pGg~liLE 47 (132)
|..|.=-+-|..++..+.+.|+|||+|++=
T Consensus 211 I~VN~EL~~L~~~L~~a~~~L~~gGrl~VI 240 (310)
T PF01795_consen 211 IAVNDELEELERGLEAAPDLLKPGGRLVVI 240 (310)
T ss_dssp HHHCTHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHhccHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 345666678999999999999999999885
No 166
>PRK06274 indolepyruvate oxidoreductase subunit B; Reviewed
Probab=48.08 E-value=23 Score=27.09 Aligned_cols=34 Identities=26% Similarity=0.463 Sum_probs=25.2
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEeccc
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQG 50 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQp 50 (132)
..+.|+++||.-.- ..+..+.|+|||++|+....
T Consensus 65 ~~~~D~lva~d~~~--------------~~~~~~~l~~gg~ii~ns~~ 98 (197)
T PRK06274 65 EGQADLLLALEPAE--------------VARNLHFLKKGGKIIVNAYA 98 (197)
T ss_pred CCCCCEEEEcCHHH--------------HHHHHhhcCCCcEEEEECCC
Confidence 35779999997652 24556779999999998643
No 167
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=47.55 E-value=20 Score=26.79 Aligned_cols=40 Identities=23% Similarity=0.451 Sum_probs=29.8
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccchhhHhh
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKK 57 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpWksY~r~ 57 (132)
.++|+++|| |. ..+.+....|+|||++|+....++.....
T Consensus 56 ~~~Dilv~l-----------~~---~~~~~~~~~l~~~g~vi~ns~~~~~~~~~ 95 (173)
T PF01558_consen 56 GEADILVAL-----------DP---EALERHLKGLKPGGVVIINSSLVKPEPEE 95 (173)
T ss_dssp SSESEEEES-----------SH---HHHHHCGTTCETTEEEEEETTT-CHHHHH
T ss_pred CCCCEEEEc-----------CH---HHHHHHhcCcCcCeEEEEECCCCCcHhHh
Confidence 578999998 33 23337778899999999999777776643
No 168
>PRK11524 putative methyltransferase; Provisional
Probab=47.36 E-value=21 Score=29.23 Aligned_cols=22 Identities=9% Similarity=0.111 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhhcCCcEEEEec
Q psy5241 27 IKRVFMRMYAQLREGGVLILEP 48 (132)
Q Consensus 27 L~~ff~r~~~~L~pGg~liLEp 48 (132)
+..+|+.+++.|+|||.|+|.-
T Consensus 59 l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 59 LYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred HHHHHHHHHHHhCCCcEEEEEc
Confidence 6789999999999999999974
No 169
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=45.08 E-value=22 Score=25.01 Aligned_cols=29 Identities=24% Similarity=0.442 Sum_probs=21.5
Q ss_pred HHHHHHHHhhcCCcEEEEecccchhhHhh
Q psy5241 29 RVFMRMYAQLREGGVLILEPQGFQSYKKK 57 (132)
Q Consensus 29 ~ff~r~~~~L~pGg~liLEpQpWksY~r~ 57 (132)
..|.+++..++-||.+||=..||.+....
T Consensus 26 nal~a~~gtv~gGGllill~p~~~~w~~~ 54 (92)
T PF08351_consen 26 NALAALAGTVRGGGLLILLLPPWESWPQL 54 (92)
T ss_dssp HHHHHHHTTB-TT-EEEEEES-GGGTTTS
T ss_pred HHHHHHhcceecCeEEEEEcCCHHHhhhc
Confidence 36889999999999999988888777653
No 170
>KOG1541|consensus
Probab=44.21 E-value=48 Score=28.24 Aligned_cols=53 Identities=21% Similarity=0.403 Sum_probs=41.0
Q ss_pred CcceeEEEEeeeeeeee-----ccCCcHHHHHHHHHHHHhhcCCcEEEEecccchhhH
Q psy5241 3 QAQFDVILCLSVTKWFH-----LNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYK 55 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIH-----LN~GD~GL~~ff~r~~~~L~pGg~liLEpQpWksY~ 55 (132)
-..||-++..|-.-|.- +|+=-.=|.+||..+|..|++|+..|+.--|=..=+
T Consensus 110 pGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q 167 (270)
T KOG1541|consen 110 PGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQ 167 (270)
T ss_pred CCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHH
Confidence 45799999999999952 344445789999999999999999998765544433
No 171
>KOG3201|consensus
Probab=44.17 E-value=33 Score=28.04 Aligned_cols=41 Identities=29% Similarity=0.472 Sum_probs=28.9
Q ss_pred CCcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCc-EEEEec
Q psy5241 2 EQAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGG-VLILEP 48 (132)
Q Consensus 2 ~~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg-~liLEp 48 (132)
+...||+|+|---+ .=|+-=..+-+.|..+|+|-| .++.-|
T Consensus 100 eq~tFDiIlaADCl------FfdE~h~sLvdtIk~lL~p~g~Al~fsP 141 (201)
T KOG3201|consen 100 EQHTFDIILAADCL------FFDEHHESLVDTIKSLLRPSGRALLFSP 141 (201)
T ss_pred hhCcccEEEeccch------hHHHHHHHHHHHHHHHhCcccceeEecC
Confidence 35679999997654 236666777788899999955 455555
No 172
>KOG3987|consensus
Probab=44.16 E-value=9.7 Score=32.31 Aligned_cols=46 Identities=22% Similarity=0.419 Sum_probs=33.3
Q ss_pred ceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcC-CcEEEEe-cccchhhHh
Q psy5241 5 QFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLRE-GGVLILE-PQGFQSYKK 56 (132)
Q Consensus 5 ~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~p-Gg~liLE-pQpWksY~r 56 (132)
+||+|+||.+ |..-|+-+ ++++-|+..|+| .|..|+- --|..-|..
T Consensus 169 k~dli~clNl-----LDRc~~p~-kLL~Di~~vl~psngrvivaLVLP~~hYVE 216 (288)
T KOG3987|consen 169 KLDLILCLNL-----LDRCFDPF-KLLEDIHLVLAPSNGRVIVALVLPYMHYVE 216 (288)
T ss_pred eeehHHHHHH-----HHhhcChH-HHHHHHHHHhccCCCcEEEEEEecccceee
Confidence 6999999987 45566655 467899999999 6666554 346777763
No 173
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.69 E-value=15 Score=29.64 Aligned_cols=41 Identities=29% Similarity=0.387 Sum_probs=29.6
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEec
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEP 48 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEp 48 (132)
++-|+|+|=-| |=||-. |+|+ .+++-+++.|||||.|-+--
T Consensus 46 ns~d~iyaeHv--lEHlt~-~Eg~-~alkechr~Lrp~G~LriAv 86 (185)
T COG4627 46 NSVDAIYAEHV--LEHLTY-DEGT-SALKECHRFLRPGGKLRIAV 86 (185)
T ss_pred cchHHHHHHHH--HHHHhH-HHHH-HHHHHHHHHhCcCcEEEEEc
Confidence 34455555444 678877 6664 67899999999999997653
No 174
>TIGR02175 PorC_KorC 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes the gamma subunit. In Pyrococcus furious, enzymes active on pyruvate and 2-ketoisovalerate share a common gamma subunit.
Probab=40.92 E-value=24 Score=26.91 Aligned_cols=31 Identities=29% Similarity=0.475 Sum_probs=22.4
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHH--HHHHhhcCCcEEEEec
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFM--RMYAQLREGGVLILEP 48 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~--r~~~~L~pGg~liLEp 48 (132)
.+.|+++||+-. .+. +..+.|+|||++|+..
T Consensus 65 ~~~D~lva~~~~--------------~~~~~~~~~~l~~gg~ii~d~ 97 (177)
T TIGR02175 65 YEPDYVVVLDPT--------------LLKTVNVTAGLKEDGILIVNT 97 (177)
T ss_pred CCCCEEEEcCHH--------------HhCccchhhCcCCCeEEEEEC
Confidence 467999998743 221 2446789999999986
No 175
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=40.89 E-value=39 Score=27.09 Aligned_cols=64 Identities=20% Similarity=0.213 Sum_probs=31.9
Q ss_pred CcHHHHHHHHHHHHhhcCCcEEEEecccchhhHhhhcCChhhhccccceEEc--cc-chHHHHHhccCCeeEEEcCCCCC
Q psy5241 23 GDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDTIWRNFQAIEFF--PH-HFTEYLLSEVGFTKCETLGSPLH 99 (132)
Q Consensus 23 GD~GL~~ff~r~~~~L~pGg~liLEpQpWksY~r~~kl~~~~~~~~~~L~lr--P~-~f~~yLl~~vGF~~~~~l~~~~~ 99 (132)
|-.--..+|+-+++.|.|||.|.+|. -..+ +.+..|+-- |. .=--+++-.+||+-+...=.|++
T Consensus 61 ~s~~E~~l~~~~~~~l~pg~~lfVeY------~~D~-------eT~~~L~~G~pp~~TrLG~~Ll~~GFtwfKdWYfPEG 127 (170)
T PF06557_consen 61 GSPLEDELYKLFSRYLEPGGRLFVEY------VEDR-------ETRRQLQRGVPPAETRLGFSLLKAGFTWFKDWYFPEG 127 (170)
T ss_dssp TSHHHHHHHHHHHTT----SEEEEE-------TT-H-------HHHHHHHTT--GGGSHHHHHHHTTT--EEEEEE--TT
T ss_pred CChHHHHHHHHHHHHhhhcCeEEEEE------ecCH-------HHHHHHHcCCCcccchhHHHHHhCCcEEEeeeeccCc
Confidence 56666789999999999999999996 2111 111111111 11 11245666789998876655543
No 176
>KOG1269|consensus
Probab=39.46 E-value=28 Score=30.39 Aligned_cols=65 Identities=25% Similarity=0.292 Sum_probs=41.4
Q ss_pred CCcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccchhhHhhhcCChhhhccccceEEc
Q psy5241 2 EQAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDTIWRNFQAIEFF 74 (132)
Q Consensus 2 ~~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpWksY~r~~kl~~~~~~~~~~L~lr 74 (132)
+...||.+-++=+|. |++.+ ..+++.++..++|||++|.+- |-.=.+.++-.++.......|..+
T Consensus 175 edn~fd~v~~ld~~~--~~~~~----~~~y~Ei~rv~kpGG~~i~~e--~i~~~~~~~~~~~~~~i~~~i~~g 239 (364)
T KOG1269|consen 175 EDNTFDGVRFLEVVC--HAPDL----EKVYAEIYRVLKPGGLFIVKE--WIKTAKLKKPNSEHVDILLEIEGG 239 (364)
T ss_pred CccccCcEEEEeecc--cCCcH----HHHHHHHhcccCCCceEEeHH--HHHhhhccCCCcccccccCceecc
Confidence 467789999888885 55554 456777777899999999873 433333333333444444555544
No 177
>PRK08338 2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Validated
Probab=36.93 E-value=37 Score=25.80 Aligned_cols=35 Identities=23% Similarity=0.378 Sum_probs=25.7
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccc
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGF 51 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpW 51 (132)
.++.|+++||+-. -..+....|+|||++|+++-.+
T Consensus 62 ~~~~D~lval~~~--------------~~~~~~~~l~~~g~vi~n~~~~ 96 (170)
T PRK08338 62 VTKADVLVALHQL--------------GYETAKSSLKEDGLLIIDTDLV 96 (170)
T ss_pred CCCCCEEEEcCHH--------------HHHHHhcccCCCeEEEEeCCCc
Confidence 3568999998753 2335567799999999997544
No 178
>PRK13699 putative methylase; Provisional
Probab=36.25 E-value=42 Score=26.89 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhhcCCcEEEE
Q psy5241 25 SGIKRVFMRMYAQLREGGVLIL 46 (132)
Q Consensus 25 ~GL~~ff~r~~~~L~pGg~liL 46 (132)
+-+..+|+.+++.|+|||.+++
T Consensus 49 ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 49 EWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred HHHHHHHHHHHHHcCCCCEEEE
Confidence 4567899999999999999986
No 179
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=35.77 E-value=45 Score=28.52 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=29.8
Q ss_pred eeEEEEeeeeeeeeccCCcHHHHHHHHHHHH-hhcCCcEEEE
Q psy5241 6 FDVILCLSVTKWFHLNWGDSGIKRVFMRMYA-QLREGGVLIL 46 (132)
Q Consensus 6 fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~-~L~pGg~liL 46 (132)
..+|+.+.-|- =|.-++--..|++++.+ .|+|||.|||
T Consensus 157 ~r~~~flGSsi---GNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 157 PTTILWLGSSI---GNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred ccEEEEeCccc---cCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 45666663321 27778889999999999 9999999999
No 180
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=34.82 E-value=34 Score=30.79 Aligned_cols=43 Identities=26% Similarity=0.532 Sum_probs=31.0
Q ss_pred cceeEEE----Eeeeeeeee-----ccCCcHHH-------HHHHHHHHHhhcCCcEEEE
Q psy5241 4 AQFDVIL----CLSVTKWFH-----LNWGDSGI-------KRVFMRMYAQLREGGVLIL 46 (132)
Q Consensus 4 ~~fDvIl----clSVTKWIH-----LN~GD~GL-------~~ff~r~~~~L~pGg~liL 46 (132)
..||.|| |-..=+|=+ .+|-.+.+ ++++..++++|+|||+||=
T Consensus 182 ~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVY 240 (470)
T PRK11933 182 ETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVY 240 (470)
T ss_pred hhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence 3589999 876666543 12334444 6789999999999999973
No 181
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=34.76 E-value=74 Score=28.21 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=22.4
Q ss_pred HHHHHHHHHhhcCCcEEEEecccchhhH
Q psy5241 28 KRVFMRMYAQLREGGVLILEPQGFQSYK 55 (132)
Q Consensus 28 ~~ff~r~~~~L~pGg~liLEpQpWksY~ 55 (132)
..|++.+++.|+|||.+.+-- .|..|-
T Consensus 215 ~~fL~e~~RvLkpGG~l~l~T-D~~~y~ 241 (390)
T PRK14121 215 EDFLNEALRVLKPGGTLELRT-DSELYF 241 (390)
T ss_pred HHHHHHHHHHcCCCcEEEEEE-ECHHHH
Confidence 579999999999999998854 566665
No 182
>KOG2904|consensus
Probab=34.34 E-value=44 Score=29.27 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=23.6
Q ss_pred ccCCcHH---HHHHHHHHHHhhcCCcEEEEecc
Q psy5241 20 LNWGDSG---IKRVFMRMYAQLREGGVLILEPQ 49 (132)
Q Consensus 20 LN~GD~G---L~~ff~r~~~~L~pGg~liLEpQ 49 (132)
|-.|-+| +..++.-++++|+|||.+.||.-
T Consensus 254 LdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 254 LDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred hccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 4455555 45677888999999999999986
No 183
>PHA03412 putative methyltransferase; Provisional
Probab=34.30 E-value=72 Score=26.60 Aligned_cols=46 Identities=22% Similarity=0.198 Sum_probs=27.5
Q ss_pred cceeEEEE---eeeeeeeeccC---CcHHHHHHHHHHHHhhcCCcEEEEecccc
Q psy5241 4 AQFDVILC---LSVTKWFHLNW---GDSGIKRVFMRMYAQLREGGVLILEPQGF 51 (132)
Q Consensus 4 ~~fDvIlc---lSVTKWIHLN~---GD~GL~~ff~r~~~~L~pGg~liLEpQpW 51 (132)
.+||+|+| |...+.-|-.. |-.=..+|++++.++++||++ |=||.-
T Consensus 113 ~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~--ILP~~~ 164 (241)
T PHA03412 113 TLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF--IIPQMS 164 (241)
T ss_pred CCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE--EeCccc
Confidence 47999998 44455433221 223355688888886666664 446543
No 184
>PRK08537 2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Validated
Probab=32.46 E-value=73 Score=24.02 Aligned_cols=34 Identities=24% Similarity=0.542 Sum_probs=24.2
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccc
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGF 51 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpW 51 (132)
...|+++||+-. .+.+..+.|+|||++|+.....
T Consensus 66 ~~~D~lval~~~--------------~~~~~~~~l~~~g~vi~n~~~~ 99 (177)
T PRK08537 66 ISPDILVAMSQE--------------AYDKYLDDLKEGGTVIVDPDLV 99 (177)
T ss_pred CCCCEEEEeCHH--------------HHHHHHhccCCCeEEEEECCCC
Confidence 357888888643 2335567899999999996443
No 185
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=32.22 E-value=41 Score=28.82 Aligned_cols=18 Identities=33% Similarity=0.641 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhcCCcEEE
Q psy5241 28 KRVFMRMYAQLREGGVLI 45 (132)
Q Consensus 28 ~~ff~r~~~~L~pGg~li 45 (132)
+++++..++.|+|||.||
T Consensus 268 ~~iL~~a~~~lk~GG~LV 285 (355)
T COG0144 268 KEILAAALKLLKPGGVLV 285 (355)
T ss_pred HHHHHHHHHhcCCCCEEE
Confidence 467889999999999998
No 186
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=32.16 E-value=2.9e+02 Score=24.82 Aligned_cols=99 Identities=17% Similarity=0.264 Sum_probs=60.8
Q ss_pred CcceeEEEE---eeeeeeeecc-----------CC-----cHHHHHHHHHHHHhhcCCcEEEEecccchhhHhhhcCChh
Q psy5241 3 QAQFDVILC---LSVTKWFHLN-----------WG-----DSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDT 63 (132)
Q Consensus 3 ~~~fDvIlc---lSVTKWIHLN-----------~G-----D~GL~~ff~r~~~~L~pGg~liLEpQpWksY~r~~kl~~~ 63 (132)
...||.|++ ||.++|-... .| ..+-..|+..+...|+|||..-+.-....-++.. .+.
T Consensus 262 ~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~gvlfr~~---~e~ 338 (489)
T COG0286 262 KGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDGVLFRGG---AEK 338 (489)
T ss_pred ccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCCcCcCCC---chH
Confidence 356898887 7888998653 22 2334789999999999987655555456555532 111
Q ss_pred hhccccceEEcccchHHHHHhccCCeeEEEcCCCC--CCCCCCCcceEEEEcCCCCCC
Q psy5241 64 IWRNFQAIEFFPHHFTEYLLSEVGFTKCETLGSPL--HPSKGFQRPIKMFTKGSKRDS 119 (132)
Q Consensus 64 ~~~~~~~L~lrP~~f~~yLl~~vGF~~~~~l~~~~--~~~~gf~RpI~lf~K~~~~~~ 119 (132)
.+..+|+++.= ....++.|. --.+|....|.+++|......
T Consensus 339 -------------~IR~~l~~~~~--~~~ii~lp~~lF~~t~i~~~Il~l~k~k~~~~ 381 (489)
T COG0286 339 -------------DIRKDLLEDNL--LEAIIGLPTGLFYNTGIPTNILFLTKNKPAER 381 (489)
T ss_pred -------------HHHHHHHhccc--eEEeeeCChhhcccCCCCeEEEEeecCCCCCC
Confidence 25566665322 223333332 225688888999988665543
No 187
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=31.96 E-value=56 Score=25.61 Aligned_cols=38 Identities=21% Similarity=0.345 Sum_probs=30.1
Q ss_pred CCcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecc
Q psy5241 2 EQAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQ 49 (132)
Q Consensus 2 ~~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQ 49 (132)
.+..||+|+|=.|.. +..++..+...|++||.+++---
T Consensus 112 ~~~~fd~v~aRAv~~----------l~~l~~~~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 112 YRESFDVVTARAVAP----------LDKLLELARPLLKPGGRLLAYKG 149 (184)
T ss_dssp TTT-EEEEEEESSSS----------HHHHHHHHGGGEEEEEEEEEEES
T ss_pred cCCCccEEEeehhcC----------HHHHHHHHHHhcCCCCEEEEEcC
Confidence 357899999988865 56788888899999999987543
No 188
>PLN02595 cytochrome c oxidase subunit VI protein
Probab=31.38 E-value=12 Score=27.71 Aligned_cols=11 Identities=36% Similarity=0.785 Sum_probs=9.4
Q ss_pred CCcHHHHHHHH
Q psy5241 22 WGDSGIKRVFM 32 (132)
Q Consensus 22 ~GD~GL~~ff~ 32 (132)
|||||+..+|.
T Consensus 88 WG~DG~~e~~h 98 (102)
T PLN02595 88 WGPDGLFEVKH 98 (102)
T ss_pred CCCCccccccc
Confidence 89999998873
No 189
>PF11378 DUF3181: Protein of unknown function (DUF3181); InterPro: IPR021518 This family of proteins has no known function.
Probab=31.28 E-value=28 Score=25.09 Aligned_cols=27 Identities=30% Similarity=0.542 Sum_probs=21.7
Q ss_pred eeeeeeeccCCcHHHHHHHHHHHHhhcC
Q psy5241 13 SVTKWFHLNWGDSGIKRVFMRMYAQLRE 40 (132)
Q Consensus 13 SVTKWIHLN~GD~GL~~ff~r~~~~L~p 40 (132)
-|.|| ||=-||+||-+-++.-|..+-.
T Consensus 15 dVa~W-hLYL~DA~L~~~LA~~~~~~l~ 41 (87)
T PF11378_consen 15 DVAKW-HLYLGDAKLHTPLAEECYPLLD 41 (87)
T ss_pred hhhhh-hhhhccchhhHHHHHHHHHhhc
Confidence 47888 9999999999998877665543
No 190
>KOG1271|consensus
Probab=31.28 E-value=51 Score=27.45 Aligned_cols=49 Identities=20% Similarity=0.305 Sum_probs=30.6
Q ss_pred cceeEEEEeeeeeeeecc-CC-cHHHHHHHHHHHHhhcCCcEEEEecccch
Q psy5241 4 AQFDVILCLSVTKWFHLN-WG-DSGIKRVFMRMYAQLREGGVLILEPQGFQ 52 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN-~G-D~GL~~ff~r~~~~L~pGg~liLEpQpWk 52 (132)
.+||+|+==-.--=|-|. -+ +.-+.-.+..+-.+|+|||+|++-.=.|-
T Consensus 135 ~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T 185 (227)
T KOG1271|consen 135 GQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFT 185 (227)
T ss_pred cceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCcc
Confidence 467777633332233333 11 22235578889999999999999876663
No 191
>TIGR03485 cas_csx13_N CRISPR-associated protein, Cas_csx13 family. Members of this family are found among cas (CRISPR-Associated) genes close to CRISPR repeats in Leptospira interrogans (a spirochete), Myxococcus xanthus (a delta-proteobacterium), and Lyngbya sp. PCC 8106 (a cyanobacterium). It is found with other cas genes in Anabaena variabilis ATCC 29413. In Lyngbya sp., the protein is split into two tandem genes. This model corresponds to the N-terminal region or upstream gene; the C-terminal region is described by TIGR03486. CRISPR/cas systems are associated with prokaryotic acquired resistance to phage and other exogenous DNA.
Probab=30.69 E-value=51 Score=28.78 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=27.8
Q ss_pred cCCcHHHHHHHHHHHHhhc------CCcEEEEecccchhhHhhh
Q psy5241 21 NWGDSGIKRVFMRMYAQLR------EGGVLILEPQGFQSYKKKR 58 (132)
Q Consensus 21 N~GD~GL~~ff~r~~~~L~------pGg~liLEpQpWksY~r~~ 58 (132)
+-||+||+-+.--.-+..+ -..+.++.-++|+++++.|
T Consensus 243 g~geAaL~~L~~~~~~~~~~d~~~~~Cqvi~~gk~~W~~qQ~~r 286 (316)
T TIGR03485 243 GPGDAGLKYLTYMATTGNKKDNSLNGCEVIVIGTVAWNKQQKVR 286 (316)
T ss_pred CchHHHHHHHHHHhhhhhccccccCceEEEEEeeecccchhhhH
Confidence 4589999876654443333 3578999999999999754
No 192
>KOG1663|consensus
Probab=30.05 E-value=42 Score=28.12 Aligned_cols=43 Identities=23% Similarity=0.390 Sum_probs=30.3
Q ss_pred CCcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccchh
Q psy5241 2 EQAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQS 53 (132)
Q Consensus 2 ~~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpWks 53 (132)
+...||.+|.= .+=|. -..++.++.+++|+||++++--=-|..
T Consensus 146 ~~~tfDfaFvD--------adK~n-Y~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 146 ESGTFDFAFVD--------ADKDN-YSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred CCCceeEEEEc--------cchHH-HHHHHHHHHhhcccccEEEEeccccCC
Confidence 34567776642 12222 237899999999999999998877766
No 193
>KOG3487|consensus
Probab=29.55 E-value=42 Score=26.04 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.1
Q ss_pred eeeeeccCCcHHHHHHHHHHHHh
Q psy5241 15 TKWFHLNWGDSGIKRVFMRMYAQ 37 (132)
Q Consensus 15 TKWIHLN~GD~GL~~ff~r~~~~ 37 (132)
+.=+|.|.-|+|++.||..++++
T Consensus 82 f~mlh~~~~~~~ik~Ffqev~el 104 (139)
T KOG3487|consen 82 FIMLHINRADDNIKLFFQEVHEL 104 (139)
T ss_pred EEEEeeccccccHHHHHHHHHHH
Confidence 34589999999999999999975
No 194
>PRK08534 pyruvate ferredoxin oxidoreductase subunit gamma; Reviewed
Probab=29.50 E-value=42 Score=25.60 Aligned_cols=35 Identities=14% Similarity=0.219 Sum_probs=23.9
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHH-HHHHhhcCCcEEEEecccch
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFM-RMYAQLREGGVLILEPQGFQ 52 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~-r~~~~L~pGg~liLEpQpWk 52 (132)
...|+++||+-. .+.. +....|+|||++|+.+ .+.
T Consensus 65 ~~~D~lva~~~~-------------~~~~~~~~~~l~~gg~vi~ns-~~~ 100 (181)
T PRK08534 65 YEPDYVIVQDPT-------------LLDSVDVTSGLKKDGIIIINT-TKD 100 (181)
T ss_pred CCCCEEEEcCHH-------------HhcchhHhcCcCCCcEEEEEC-CCC
Confidence 356888888753 1121 4467799999999996 444
No 195
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=29.04 E-value=58 Score=26.54 Aligned_cols=40 Identities=13% Similarity=0.090 Sum_probs=28.0
Q ss_pred ceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEec
Q psy5241 5 QFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEP 48 (132)
Q Consensus 5 ~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEp 48 (132)
+||.| +-.+=.+||+ .+==.+..+++.++|+|||.+++.-
T Consensus 124 ~fD~V--yDra~~~Alp--p~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 124 VFDIW--YDRGAYIALP--NDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred CcCee--eeehhHhcCC--HHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 56664 3445567774 3334578889999999999888763
No 196
>PRK08441 oorC 2-oxoglutarate-acceptor oxidoreductase subunit OorC; Reviewed
Probab=28.89 E-value=72 Score=24.53 Aligned_cols=35 Identities=20% Similarity=0.539 Sum_probs=24.4
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccch
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQ 52 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpWk 52 (132)
.+.|+++||+-. -..+..+.|+|||++|+...+++
T Consensus 67 ~~~D~lval~~~--------------~~~~~~~~l~~gg~ii~n~~~~~ 101 (183)
T PRK08441 67 GEIDFMLSTAQI--------------SYNQFKSGVKEGGIIVVEPNLVK 101 (183)
T ss_pred CCCCEEEECCHH--------------HHHHHHhhcCCCeEEEEcCCCCC
Confidence 467888887632 23455567999999999865543
No 197
>KOG1009|consensus
Probab=28.75 E-value=29 Score=31.39 Aligned_cols=26 Identities=31% Similarity=0.625 Sum_probs=22.0
Q ss_pred CcHHHHHHHHHHHHhhcCCcEEEEeccc
Q psy5241 23 GDSGIKRVFMRMYAQLREGGVLILEPQG 50 (132)
Q Consensus 23 GD~GL~~ff~r~~~~L~pGg~liLEpQp 50 (132)
.|+-|+.||+|++ +.|.|.|+|-|-.
T Consensus 225 hDeTlksFFrRls--fTPdG~llvtPag 250 (434)
T KOG1009|consen 225 HDETLKSFFRRLS--FTPDGSLLVTPAG 250 (434)
T ss_pred ecCchhhhhhhcc--cCCCCcEEEcccc
Confidence 4888999999998 5699999998753
No 198
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=28.48 E-value=59 Score=26.94 Aligned_cols=36 Identities=17% Similarity=0.199 Sum_probs=24.5
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecc
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQ 49 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQ 49 (132)
..+.|+++||.-+ +....+.+...|+|||.+|+...
T Consensus 65 ~~~~D~lv~~~~~-----------~~~~~~~~~~~l~~gg~vi~n~~ 100 (312)
T PRK14028 65 VKTPDVAVIFDDK-----------LIDPMRFAIDAVKPGGYVILNTG 100 (312)
T ss_pred cCCCCEEEEeChh-----------hhccccHHhcCcCCCeEEEEeCC
Confidence 4568999999733 22111224678999999999973
No 199
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=27.97 E-value=47 Score=25.92 Aligned_cols=27 Identities=19% Similarity=0.377 Sum_probs=22.2
Q ss_pred HHHHHHHHhhcCCcEEEEecccchhhHh
Q psy5241 29 RVFMRMYAQLREGGVLILEPQGFQSYKK 56 (132)
Q Consensus 29 ~ff~r~~~~L~pGg~liLEpQpWksY~r 56 (132)
.|+..+++.|+|||.|-+-- .|..|..
T Consensus 114 ~fl~~~~~~L~~gG~l~~~T-D~~~y~~ 140 (195)
T PF02390_consen 114 EFLELLARVLKPGGELYFAT-DVEEYAE 140 (195)
T ss_dssp HHHHHHHHHEEEEEEEEEEE-S-HHHHH
T ss_pred hHHHHHHHHcCCCCEEEEEe-CCHHHHH
Confidence 58889999999999988877 7888874
No 200
>PF10423 AMNp_N: Bacterial AMP nucleoside phosphorylase N-terminus ; InterPro: IPR018953 This is the N-terminal domain of bacterial AMP nucleoside phosphorylase (AMNp). The N- and C-termini form distinct domains which intertwine with each other to form a stable monomer which associates with five other monomers to yield the active hexamer. The N terminus consists of a long helix and a four-stranded sheet with a novel topology. The C terminus binds the nucleoside whereas the N terminus acts as the enzymatic regulatory domain. AMNp (3.2.2.4 from EC) catalyses the hydrolysis of AMP to form adenine and ribose 5-phosphate. thereby regulating intracellular AMP levels []. ; PDB: 1T8R_B 1T8Y_E 1T8W_A 1T8S_F 2GUW_A.
Probab=27.77 E-value=23 Score=27.80 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=14.7
Q ss_pred cccceEEcccchHHHHHhccCC
Q psy5241 67 NFQAIEFFPHHFTEYLLSEVGF 88 (132)
Q Consensus 67 ~~~~L~lrP~~f~~yLl~~vGF 88 (132)
.|.+--=||+.|.+||+++++.
T Consensus 67 ~Y~tTvTRP~LFr~YL~eQl~l 88 (160)
T PF10423_consen 67 VYSTTVTRPDLFRDYLREQLTL 88 (160)
T ss_dssp EEEEE---TTTTHHHHHHHHHH
T ss_pred eeEEeCcCHHHHHHHHHHHHHH
Confidence 3455556799999999997664
No 201
>KOG1709|consensus
Probab=27.41 E-value=54 Score=27.91 Aligned_cols=33 Identities=15% Similarity=0.311 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEecccchhhHhhhcCChhhh
Q psy5241 25 SGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDTIW 65 (132)
Q Consensus 25 ~GL~~ff~r~~~~L~pGg~liLEpQpWksY~r~~kl~~~~~ 65 (132)
+-++.|+..+..+|+|+|+| ||-+.--.++.++
T Consensus 183 Edl~~~hqh~~rLLkP~gv~--------SyfNg~~~~~~~~ 215 (271)
T KOG1709|consen 183 EDLRHFHQHVVRLLKPEGVF--------SYFNGLGADNLMF 215 (271)
T ss_pred HHHHHHHHHHhhhcCCCceE--------EEecCcccchhhh
Confidence 56889999999999999998 5665444444333
No 202
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=27.10 E-value=53 Score=28.25 Aligned_cols=52 Identities=23% Similarity=0.394 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhcCCcEEEE-ecccchhhHhhhcCChhhhccccceEEcccchHHHHHhccCCeeEEEcC
Q psy5241 28 KRVFMRMYAQLREGGVLIL-EPQGFQSYKKKRKLTDTIWRNFQAIEFFPHHFTEYLLSEVGFTKCETLG 95 (132)
Q Consensus 28 ~~ff~r~~~~L~pGg~liL-EpQpWksY~r~~kl~~~~~~~~~~L~lrP~~f~~yLl~~vGF~~~~~l~ 95 (132)
.+|++.++..|+|||.|+= --||=+-|+-+ .+.. ...+ .|.++||+.+..+.
T Consensus 225 eefY~El~RiLkrgGrlFHYvG~Pg~ryrG~-d~~~--------------gVa~-RLr~vGF~~v~~~~ 277 (287)
T COG2521 225 EEFYRELYRILKRGGRLFHYVGNPGKRYRGL-DLPK--------------GVAE-RLRRVGFEVVKKVR 277 (287)
T ss_pred HHHHHHHHHHcCcCCcEEEEeCCCCcccccC-ChhH--------------HHHH-HHHhcCceeeeeeh
Confidence 6899999999999987763 45666666632 2211 1334 34578999776644
No 203
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=27.05 E-value=72 Score=24.50 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhcCCcEEEE---eccc
Q psy5241 27 IKRVFMRMYAQLREGGVLIL---EPQG 50 (132)
Q Consensus 27 L~~ff~r~~~~L~pGg~liL---EpQp 50 (132)
|..||+.+..+|+++|.+.| +-||
T Consensus 104 l~~Ff~Sa~~~L~~~G~IhVTl~~~~p 130 (166)
T PF10354_consen 104 LRGFFKSASQLLKPDGEIHVTLKDGQP 130 (166)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCCCC
Confidence 57899999999999998877 4455
No 204
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=26.70 E-value=70 Score=27.15 Aligned_cols=42 Identities=24% Similarity=0.439 Sum_probs=33.5
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccc
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGF 51 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpW 51 (132)
...|+|++-.|.-|+-=+ -++|.|+.++|.|||.|-+.-..|
T Consensus 91 ~~~dllfaNAvlqWlpdH------~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 91 QPTDLLFANAVLQWLPDH------PELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred Cccchhhhhhhhhhcccc------HHHHHHHHHhhCCCceEEEECCCc
Confidence 367888888888887322 368999999999999999986655
No 205
>PHA02097 hypothetical protein
Probab=26.38 E-value=15 Score=24.51 Aligned_cols=30 Identities=27% Similarity=0.430 Sum_probs=21.6
Q ss_pred eeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecccc
Q psy5241 16 KWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGF 51 (132)
Q Consensus 16 KWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpW 51 (132)
|||-||.-..|+-. +.-.|||++|=-...+
T Consensus 1 ~w~e~~rd~~~vt~------amntp~gv~iri~~tf 30 (59)
T PHA02097 1 MWKELDRDSQVVTS------AMNTPGGVIIRIAHTF 30 (59)
T ss_pred CceEcccCCceEEE------EeeCCCcEEEEEEeEE
Confidence 79999988777642 4568999998654433
No 206
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=26.11 E-value=52 Score=26.90 Aligned_cols=34 Identities=26% Similarity=0.416 Sum_probs=21.8
Q ss_pred cceeEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEecc
Q psy5241 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQ 49 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEpQ 49 (132)
..||+|++- ++.-..=+.+.++|+|||++|+=-.
T Consensus 137 aPyD~I~Vt------------aaa~~vP~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 137 APYDRIIVT------------AAAPEVPEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCcCEEEEe------------eccCCCCHHHHHhcccCCEEEEEEc
Confidence 567777752 2222233455699999999998443
No 207
>PRK05844 pyruvate flavodoxin oxidoreductase subunit gamma; Validated
Probab=25.46 E-value=52 Score=25.29 Aligned_cols=30 Identities=20% Similarity=0.358 Sum_probs=21.8
Q ss_pred ceeEEEEeeeeeeeeccCCcHHHHHHHH--HHHHhhcCCcEEEEec
Q psy5241 5 QFDVILCLSVTKWFHLNWGDSGIKRVFM--RMYAQLREGGVLILEP 48 (132)
Q Consensus 5 ~fDvIlclSVTKWIHLN~GD~GL~~ff~--r~~~~L~pGg~liLEp 48 (132)
+.|+++||+-. .+. ++.+-|+|||++|+-.
T Consensus 66 ~~Dilv~ld~~--------------~~~~~~~~~~l~~~g~iiins 97 (186)
T PRK05844 66 QPDYVLVIDPG--------------LVFIENIFANEKEDTKYIITT 97 (186)
T ss_pred CCCEEEEecHH--------------HhccccHhcCcCCCeEEEEEC
Confidence 68999999742 222 3367889999998863
No 208
>PRK14029 pyruvate/ketoisovalerate ferredoxin oxidoreductase subunit gamma; Provisional
Probab=25.30 E-value=69 Score=24.62 Aligned_cols=35 Identities=23% Similarity=0.427 Sum_probs=24.7
Q ss_pred CcceeEEEEeeeeeeeeccCCcHHHHHHHH--HHHHhhcCCcEEEEecccc
Q psy5241 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFM--RMYAQLREGGVLILEPQGF 51 (132)
Q Consensus 3 ~~~fDvIlclSVTKWIHLN~GD~GL~~ff~--r~~~~L~pGg~liLEpQpW 51 (132)
....|+++||+-. .+. +..+.|+|||++|+.+...
T Consensus 64 ~~~~Dilva~~~~--------------~~~~~~~~~~l~~~g~vi~n~~~~ 100 (185)
T PRK14029 64 IYEPDVVVVLDPS--------------LLDTVDVTAGLKDGGIVIVNTEKS 100 (185)
T ss_pred cCCCCEEEEcCHH--------------HhhhchHhhCcCCCcEEEEECCCC
Confidence 4568999998642 222 3467799999999997543
No 209
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=25.20 E-value=1.4e+02 Score=22.89 Aligned_cols=32 Identities=16% Similarity=0.342 Sum_probs=25.9
Q ss_pred ccCCcHHHHHHHHHHHHhhcCCcEEEEecccchh
Q psy5241 20 LNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQS 53 (132)
Q Consensus 20 LN~GD~GL~~ff~r~~~~L~pGg~liLEpQpWks 53 (132)
+.+|.++..+.++.+.+ ..=..+++|-||=++
T Consensus 33 ~~~~~~~~~~~~~dl~~--~~~d~VlIErQ~~r~ 64 (143)
T PF04848_consen 33 VDWSRDWEYRILKDLLK--YEADTVLIERQPPRN 64 (143)
T ss_pred CCcccchHHHHHHHHhh--ccCCEEEEecCCCCC
Confidence 56778888988888887 334899999999887
No 210
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination ; PDB: 3AGK_A 2VGN_A 2VGM_A 3J16_A 3IZQ 3IR9_A 3OBW_A 3MCA_B 2QI2_A 3E1Y_D ....
Probab=24.05 E-value=1.1e+02 Score=22.28 Aligned_cols=35 Identities=6% Similarity=0.172 Sum_probs=27.9
Q ss_pred ceeEEEEeeeeeeeeccCC-----------cHHHHHHHHHHHHhhc
Q psy5241 5 QFDVILCLSVTKWFHLNWG-----------DSGIKRVFMRMYAQLR 39 (132)
Q Consensus 5 ~fDvIlclSVTKWIHLN~G-----------D~GL~~ff~r~~~~L~ 39 (132)
++.+..+-+|+..|.=.++ ++.+.+||+++++.++
T Consensus 19 ~~~~~~~~~i~~~ip~K~~~Gg~s~~rf~r~~~~~~f~~~i~~~l~ 64 (133)
T PF03464_consen 19 GYGTEILQRIESNIPGKHKKGGQSQRRFEREKALEKFFKEIAEALK 64 (133)
T ss_dssp TTEEEEEEEEE-GHCCCSSTTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEEecCCCccCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 4678888899998877764 6788999999999885
No 211
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=23.76 E-value=97 Score=25.21 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=23.8
Q ss_pred HHHHHHHHhhcCCcEEEEecccchhhHhh
Q psy5241 29 RVFMRMYAQLREGGVLILEPQGFQSYKKK 57 (132)
Q Consensus 29 ~ff~r~~~~L~pGg~liLEpQpWksY~r~ 57 (132)
.|++.+.+.|+|||.|-+-- .|+.|..-
T Consensus 145 ~fl~~~a~~Lk~gG~l~~aT-D~~~y~e~ 172 (227)
T COG0220 145 EFLKLYARKLKPGGVLHFAT-DNEEYFEW 172 (227)
T ss_pred HHHHHHHHHccCCCEEEEEe-cCHHHHHH
Confidence 58899999999999998877 88888743
No 212
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=23.44 E-value=55 Score=25.09 Aligned_cols=20 Identities=15% Similarity=0.391 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhcCCcEEEEe
Q psy5241 28 KRVFMRMYAQLREGGVLILE 47 (132)
Q Consensus 28 ~~ff~r~~~~L~pGg~liLE 47 (132)
...++.+.+.|+|||+++|-
T Consensus 72 l~Al~~al~lL~~gG~i~iv 91 (140)
T PF06962_consen 72 LKALEAALELLKPGGIITIV 91 (140)
T ss_dssp HHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHhhccCCEEEEE
Confidence 45678888999999999885
No 213
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=22.99 E-value=42 Score=29.75 Aligned_cols=36 Identities=22% Similarity=0.414 Sum_probs=22.9
Q ss_pred cCCcEEEEec--ccchhhHhhhcCChh-----hhccccceEEc
Q psy5241 39 REGGVLILEP--QGFQSYKKKRKLTDT-----IWRNFQAIEFF 74 (132)
Q Consensus 39 ~pGg~liLEp--QpWksY~r~~kl~~~-----~~~~~~~L~lr 74 (132)
..||+++..| |.|+.|+++++.-.+ ..-++..|-|+
T Consensus 234 ~EG~yVv~qpdvqsWe~Yq~r~~a~~~~~Dqv~k~~~~~i~Lk 276 (427)
T COG5222 234 PEGGYVVAQPDVQSWEKYQQRTKAVAEIPDQVYKMQPPNISLK 276 (427)
T ss_pred CCCCeEEeccchHHHHHHHHHHHhhhhCchhhhccCCCCcccc
Confidence 3488888877 789999976543222 22355566555
No 214
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=22.48 E-value=90 Score=25.83 Aligned_cols=28 Identities=39% Similarity=0.549 Sum_probs=23.2
Q ss_pred cCCcHH---HHHHHHHHHHhhcCCcEEEEec
Q psy5241 21 NWGDSG---IKRVFMRMYAQLREGGVLILEP 48 (132)
Q Consensus 21 N~GD~G---L~~ff~r~~~~L~pGg~liLEp 48 (132)
-.|.+| +++|+..+-+.|+|||.+++|.
T Consensus 208 ~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~ 238 (280)
T COG2890 208 VGGGDGLEVYRRILGEAPDILKPGGVLILEI 238 (280)
T ss_pred ccCccHHHHHHHHHHhhHHHcCCCcEEEEEE
Confidence 344566 5788888999999999999998
No 215
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=22.16 E-value=1.1e+02 Score=22.72 Aligned_cols=45 Identities=18% Similarity=0.198 Sum_probs=22.3
Q ss_pred cceeEEEEeeeeeeeeccCCc-----HHHHHHHHHHHHhhcCCcEEEEec
Q psy5241 4 AQFDVILCLSVTKWFHLNWGD-----SGIKRVFMRMYAQLREGGVLILEP 48 (132)
Q Consensus 4 ~~fDvIlclSVTKWIHLN~GD-----~GL~~ff~r~~~~L~pGg~liLEp 48 (132)
..||+|+|=-....-.--.=| +=+...+.-+...|+|||.||+.-
T Consensus 90 ~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 90 EKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp CSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred cCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence 578999885421111110111 112334445557799999888754
No 216
>KOG2198|consensus
Probab=21.95 E-value=80 Score=28.18 Aligned_cols=29 Identities=28% Similarity=0.488 Sum_probs=20.5
Q ss_pred eeecc-CCcHHH-HHHHHHHHHhhcCCcEEE
Q psy5241 17 WFHLN-WGDSGI-KRVFMRMYAQLREGGVLI 45 (132)
Q Consensus 17 WIHLN-~GD~GL-~~ff~r~~~~L~pGg~li 45 (132)
|+-.. .|=-+| .+++++-.++|++||.||
T Consensus 263 w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lV 293 (375)
T KOG2198|consen 263 WKTQRALGLHALQLRILRRGLRLLKVGGRLV 293 (375)
T ss_pred hhhhhccCChHHHHHHHHHHHHHhcCCCEEE
Confidence 45444 232333 367899999999999998
No 217
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=21.14 E-value=60 Score=23.99 Aligned_cols=54 Identities=22% Similarity=0.360 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhcCCcEEEEecccchhhHhhhcCChhhhccccceEEcccchHHHHHhccCCeeEEEcCCCCCCCCCCCcc
Q psy5241 28 KRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDTIWRNFQAIEFFPHHFTEYLLSEVGFTKCETLGSPLHPSKGFQRP 107 (132)
Q Consensus 28 ~~ff~r~~~~L~pGg~liLEpQpWksY~r~~kl~~~~~~~~~~L~lrP~~f~~yLl~~vGF~~~~~l~~~~~~~~gf~Rp 107 (132)
..+|++|+++++|||.|. +|..+.. +.+=| .++||.....-| -|-+|.
T Consensus 70 ~e~~~~l~~~~~~~~~l~-------Tys~a~~------------------Vr~~L-~~aGF~v~~~~g------~g~Kr~ 117 (124)
T PF05430_consen 70 EELFKKLARLSKPGGTLA-------TYSSAGA------------------VRRAL-QQAGFEVEKVPG------FGRKRE 117 (124)
T ss_dssp HHHHHHHHHHEEEEEEEE-------ES--BHH------------------HHHHH-HHCTEEEEEEE-------STTSSE
T ss_pred HHHHHHHHHHhCCCcEEE-------EeechHH------------------HHHHH-HHcCCEEEEcCC------CCCcch
Confidence 458999999999999876 5554311 22324 468998655422 344677
Q ss_pred eEEEEc
Q psy5241 108 IKMFTK 113 (132)
Q Consensus 108 I~lf~K 113 (132)
+..=.|
T Consensus 118 ~~~a~~ 123 (124)
T PF05430_consen 118 MLRAVK 123 (124)
T ss_dssp EEEEEC
T ss_pred heEEEc
Confidence 765444
No 218
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=21.07 E-value=95 Score=28.33 Aligned_cols=32 Identities=31% Similarity=0.582 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhhcCCcEEEE-ec---ccchhhHhhh
Q psy5241 27 IKRVFMRMYAQLREGGVLIL-EP---QGFQSYKKKR 58 (132)
Q Consensus 27 L~~ff~r~~~~L~pGg~liL-Ep---QpWksY~r~~ 58 (132)
|.-..++++++++|||.||| || -.|.--.++|
T Consensus 204 i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~I~rAR 239 (484)
T COG5459 204 IQVNIERLWNLLAPGGHLVIVERGTPAGFERILRAR 239 (484)
T ss_pred HHHHHHHHHHhccCCCeEEEEeCCCchhHHHHHHHH
Confidence 33478999999999998765 54 4455555543
No 219
>PF03540 TFIID_30kDa: Transcription initiation factor TFIID 23-30kDa subunit; InterPro: IPR003923 Transcription initiation factor TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. The complex includes TATA binding protein (TBP) and various TBP-associated factors (TAFS). TFIID a bona fide RNA polymerase II-specific TATA-binding protein-associated factor (TAF) and is essential for viability []. TFIID acts to nucleate the transcription complex, recruiting the rest of the factors through a direct interaction with TFIIB. The TBP subunit of TFIID is sufficient for TATA-element binding and TFIIB interaction, and can support basal transcription. The protein belongs to the TAF2H family.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus
Probab=21.03 E-value=55 Score=21.28 Aligned_cols=16 Identities=38% Similarity=0.808 Sum_probs=13.7
Q ss_pred ccchHHHHHhccCCee
Q psy5241 75 PHHFTEYLLSEVGFTK 90 (132)
Q Consensus 75 P~~f~~yLl~~vGF~~ 90 (132)
||...+|.++..||..
T Consensus 4 PD~v~~~yL~~~G~~~ 19 (51)
T PF03540_consen 4 PDEVTDYYLERSGFQT 19 (51)
T ss_pred CHHHHHHHHHHCCCCC
Confidence 7888898889999974
No 220
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=20.92 E-value=2.1e+02 Score=23.33 Aligned_cols=80 Identities=10% Similarity=0.108 Sum_probs=49.4
Q ss_pred eEEEEeeeeeeeeccCCcHHHHHHHHHHHHhhcCCcEEEEec-cc----chhhH--hhhcCChhhhccccceE--Ecccc
Q psy5241 7 DVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEP-QG----FQSYK--KKRKLTDTIWRNFQAIE--FFPHH 77 (132)
Q Consensus 7 DvIlclSVTKWIHLN~GD~GL~~ff~r~~~~L~pGg~liLEp-Qp----WksY~--r~~kl~~~~~~~~~~L~--lrP~~ 77 (132)
-++++--|+|++. .+.+..+|+.+.+...||..+++|. .+ +..+. +..+... ......+. +.|+.
T Consensus 160 tl~i~EGvl~YL~----~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 233 (260)
T TIGR00027 160 TAWLWEGLLMYLT----EEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAAR--GVDGSGLVFGIDRAD 233 (260)
T ss_pred eeeeecchhhcCC----HHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhh--cccccccccCCChhh
Confidence 3677777777764 4678999999999888999999985 22 11111 1111110 01112222 34678
Q ss_pred hHHHHHhccCCeeEEE
Q psy5241 78 FTEYLLSEVGFTKCET 93 (132)
Q Consensus 78 f~~yLl~~vGF~~~~~ 93 (132)
..++|. +.||+..+.
T Consensus 234 ~~~~l~-~~Gw~~~~~ 248 (260)
T TIGR00027 234 VAEWLA-ERGWRASEH 248 (260)
T ss_pred HHHHHH-HCCCeeecC
Confidence 888775 569997766
No 221
>PTZ00376 aspartate aminotransferase; Provisional
Probab=20.48 E-value=1.7e+02 Score=24.63 Aligned_cols=39 Identities=10% Similarity=0.080 Sum_probs=30.3
Q ss_pred eccCCcHHHHHHHHHHHHhhcCCcEEEEecccchhhHhh
Q psy5241 19 HLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKK 57 (132)
Q Consensus 19 HLN~GD~GL~~ff~r~~~~L~pGg~liLEpQpWksY~r~ 57 (132)
+.+.|-.++...+.-+...+.||..++++...|..|...
T Consensus 102 ~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~ 140 (404)
T PTZ00376 102 QALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNI 140 (404)
T ss_pred eccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHH
Confidence 366677777766655556679999999999999999853
No 222
>PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) [].; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 3LK7_A 2XJA_A 2WTZ_A 2GCA_A 1JBW_A 1JBV_A 2GC5_A 1FGS_A 2GCB_A 2GC6_A ....
Probab=20.47 E-value=1e+02 Score=22.74 Aligned_cols=44 Identities=18% Similarity=0.317 Sum_probs=29.3
Q ss_pred ceeEEEEeeeeeeeeccCCc--HHHHHHHHHHHHhhcCCcEEEEecc
Q psy5241 5 QFDVILCLSVTKWFHLNWGD--SGIKRVFMRMYAQLREGGVLILEPQ 49 (132)
Q Consensus 5 ~fDvIlclSVTKWIHLN~GD--~GL~~ff~r~~~~L~pGg~liLEpQ 49 (132)
++|+.+..+|.. =|++.-+ +.+.+.+.++++.+++||.+|+-.+
T Consensus 71 ~p~i~viTni~~-dH~~~~~s~~~~~~~k~~~~~~~~~~~~~v~n~d 116 (188)
T PF08245_consen 71 KPDIAVITNIGP-DHLDRFGSIEEYAEAKAKIFRGLKPGGVAVLNAD 116 (188)
T ss_dssp BESEEEE----S-SSHCCTSSHHHHHHHHHGGHTTTSTTSEEEEETT
T ss_pred ehheeeeceecc-cccccCCCHHHHHHHHHhhhhhcccceEEEecCC
Confidence 456666666553 4666554 5677888889998989999999754
Done!