RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5241
(132 letters)
>gnl|CDD|148462 pfam06859, Bin3, Bicoid-interacting protein 3 (Bin3). This family
represents a conserved region of approximately 120
residues within eukaryotic Bicoid-interacting protein 3
(Bin3). Bin3, which shows similarity to a number of
protein methyltransferases that modify RNA-binding
proteins, interacts with Bicoid, which itself directs
pattern formation in the early Drosophila embryo. The
interaction might allow Bicoid to switch between its
dual roles in transcription and translation. Note that
family members contain a conserved HLN motif.
Length = 110
Score = 155 bits (393), Expect = 3e-50
Identities = 67/110 (60%), Positives = 86/110 (78%), Gaps = 1/110 (0%)
Query: 5 QFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDTI 64
+FDVILCLSVTKW HLNWGD G+KR F R+Y LR GG+LILEPQ + SYKK++KL++TI
Sbjct: 1 EFDVILCLSVTKWVHLNWGDEGLKRFFRRIYRLLRPGGILILEPQPWDSYKKRKKLSETI 60
Query: 65 WRNFQAIEFFPHHFTEYLLS-EVGFTKCETLGSPLHPSKGFQRPIKMFTK 113
++N++ I+ P F EYLLS EVGF+ E +G P + SKGF+RPI +F K
Sbjct: 61 YKNYERIKLKPDQFEEYLLSPEVGFSSYELVGVPNNTSKGFKRPIYIFHK 110
>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 98
Score = 32.0 bits (73), Expect = 0.027
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 2 EQAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVL 44
+ FDV++ +V H + D + V + L+ GGVL
Sbjct: 62 DPGSFDVVVASNV---LH-HLAD--PRAVLRNLRRLLKPGGVL 98
>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC. This enzyme,
which is found in biotin biosynthetic gene clusters in
proteobacteria, firmicutes, green-sulfur bacteria,
fusobacterium and bacteroides, is believed to carry out
an enzymatic step prior to the formation of pimeloyl-CoA
(although attribution of this annotation is not
traceable). The enzyme appears related to
methyltransferases by homology [Biosynthesis of
cofactors, prosthetic groups, and carriers, Biotin].
Length = 240
Score = 30.3 bits (69), Expect = 0.21
Identities = 13/86 (15%), Positives = 30/86 (34%), Gaps = 10/86 (11%)
Query: 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDT 63
+ FD+I+ +W + + + L+ GG+L G + + R+
Sbjct: 97 SSFDLIVSNLALQWCD------DLSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQ 150
Query: 64 IWRNFQAIE----FFPHHFTEYLLSE 85
+ +++ + F L E
Sbjct: 151 HGLRYLSLDELKALLKNSFELLTLEE 176
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.).
Length = 107
Score = 28.9 bits (65), Expect = 0.32
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 5/43 (11%)
Query: 5 QFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILE 47
FDVI+ + R L+ GGVL+L
Sbjct: 66 SFDVIISDPPLHHLVEDL-----ARFLEEARRLLKPGGVLVLT 103
>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 92
Score = 27.2 bits (61), Expect = 1.2
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 6/43 (13%)
Query: 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLIL 46
FDV++ V D +R + L+ GG L++
Sbjct: 56 ESFDVVVSSLVLHHLP----D--PERALREIARVLKPGGKLVI 92
>gnl|CDD|224271 COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins
[Cell motility and secretion / Signal transduction
mechanisms].
Length = 268
Score = 28.0 bits (63), Expect = 1.5
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 6 FDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLIL 46
FD+I C +V +F + +R+ R L+ GG+L L
Sbjct: 203 FDLIFCRNVLIYFD----EETQERILRRFADSLKPGGLLFL 239
>gnl|CDD|235189 PRK03988, PRK03988, translation initiation factor IF-2 subunit
beta; Validated.
Length = 138
Score = 27.6 bits (62), Expect = 1.5
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 63 TIWRNFQAIEFF----PHHFTEYLLSEVG 87
TI RNF+ I P H ++LL E+G
Sbjct: 42 TIIRNFKEIADRLNRDPKHVAKFLLKELG 70
>gnl|CDD|216673 pfam01739, CheR, CheR methyltransferase, SAM binding domain. CheR
proteins are part of the chemotaxis signaling mechanism
in bacteria. CheR methylates the chemotaxis receptor at
specific glutamate residues. CheR is an
S-adenosylmethionine- dependent methyltransferase - the
C-terminal domain (this one) binds SAM.
Length = 194
Score = 26.8 bits (60), Expect = 3.3
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 5 QFDVILCLSVTKWFHLNWGDSGIKR-VFMRMYAQLREGGVLIL 46
FDVI C +V +F D +R + R + L+ GG L L
Sbjct: 134 DFDVIFCRNVLIYF-----DEETQRKILNRFASALKPGGYLFL 171
>gnl|CDD|153248 cd07986, LPLAT_ACT14924-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
ACT14924. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
phospholipid/glycerol acyltransferases such as the
Pectobacterium carotovorum subsp. carotovorum PC1 locus
ACT14924 putative acyltransferase, and similar proteins.
Length = 210
Score = 26.4 bits (59), Expect = 3.9
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 38 LREGGVLILEPQGFQSYKK--KRKLTDTIWRNFQA 70
L+ GG LI+ P G S +++D W F A
Sbjct: 95 LKNGGALIIFPAGRVSTASPPFGRVSDRPWNPFVA 129
>gnl|CDD|216418 pfam01295, Adenylate_cycl, Adenylate cyclase, class-I.
Length = 599
Score = 26.1 bits (58), Expect = 7.2
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 52 QSYKKKRKLTDTIWRNFQAIEFFPHHFTEYLL 83
Y R ++ + + +HF YLL
Sbjct: 46 SEYPNTRLISKEFKQRLLEGDTVSYHFDPYLL 77
>gnl|CDD|225717 COG3176, COG3176, Putative hemolysin [General function prediction
only].
Length = 292
Score = 25.8 bits (57), Expect = 7.7
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 18 FHLNWGDSGIKRVFMRMYAQ-----LREGGVLILEPQGFQSYKKKRKLTDTIW 65
F ++W + + F + REG L+L G +Y K +L D
Sbjct: 128 FPVDWLEELRPKKFNELGRSCVHREYREGRTLLLFWAGLVAYLDKGRLDDMPG 180
>gnl|CDD|183451 PRK12336, PRK12336, translation initiation factor IF-2 subunit
beta; Provisional.
Length = 201
Score = 25.7 bits (57), Expect = 7.8
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 8/31 (25%)
Query: 63 TIWRNFQAI------EFFPHHFTEYLLSEVG 87
TI NF I + P H ++L E+G
Sbjct: 38 TILTNFGEIADALNRD--PDHLMKFLQRELG 66
>gnl|CDD|214534 smart00138, MeTrc, Methyltransferase, chemotaxis proteins.
Methylates methyl-accepting chemotaxis proteins to form
gamma-glutamyl methyl ester residues.
Length = 264
Score = 25.7 bits (57), Expect = 7.9
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 5 QFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLIL 46
FD+I C +V +F + +++ R L+ GG L L
Sbjct: 203 DFDLIFCRNVLIYF----DEPTQRKLLNRFAEALKPGGYLFL 240
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.138 0.441
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,743,503
Number of extensions: 582531
Number of successful extensions: 438
Number of sequences better than 10.0: 1
Number of HSP's gapped: 434
Number of HSP's successfully gapped: 25
Length of query: 132
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 46
Effective length of database: 7,123,158
Effective search space: 327665268
Effective search space used: 327665268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)