RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5241
(132 letters)
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 144 bits (364), Expect = 5e-44
Identities = 58/116 (50%), Positives = 84/116 (72%), Gaps = 1/116 (0%)
Query: 1 MEQAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKL 60
+ ++DV+LCLS+TKW HLNWGD G+KR+F R+Y LR GG+L+LEPQ + SY K++ L
Sbjct: 173 AQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTL 232
Query: 61 TDTIWRNFQAIEFFPHHFTEYLLS-EVGFTKCETLGSPLHPSKGFQRPIKMFTKGS 115
T+TI++N+ I+ P F+ YL S +VGF+ E + +P + SKGFQRP+ +F K
Sbjct: 233 TETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVATPHNTSKGFQRPVYLFHKAR 288
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 37.9 bits (88), Expect = 3e-04
Identities = 12/70 (17%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 5 QFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDTI 64
+FD + T + + + ++++F ++ L+ GGV I + F + + +
Sbjct: 105 EFDAVTMFFST-IMYFD--EEDLRKLFSKVAEALKPGGVFITD---FPCWFYGGRDGPVV 158
Query: 65 WRNFQAIEFF 74
W + E
Sbjct: 159 WNEQKGEEKL 168
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 37.4 bits (87), Expect = 4e-04
Identities = 18/108 (16%), Positives = 30/108 (27%), Gaps = 22/108 (20%)
Query: 5 QFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDTI 64
++D+++ D K ++ R Y+ L+E G+ I L TI
Sbjct: 109 KYDMVVSALSIHHLE----DEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTI 164
Query: 65 WRNFQAIEFFPHHFTEY------------------LLSEVGFTKCETL 94
WR + L E GF +
Sbjct: 165 WRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAGFRDVSCI 212
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 37.4 bits (87), Expect = 5e-04
Identities = 7/44 (15%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 5 QFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEP 48
+F ++ + + + L GGV+++EP
Sbjct: 100 KFSAVVSMFSS--VGYLKTTEELGAAVASFAEHLEPGGVVVVEP 141
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 36.6 bits (85), Expect = 0.001
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 5 QFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILE 47
D I L + + ++ +K+ F L +GG L+ +
Sbjct: 96 PVDAITILCDS--LNYLQTEADVKQTFDSAARLLTDGGKLLFD 136
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 36.2 bits (84), Expect = 0.001
Identities = 21/127 (16%), Positives = 33/127 (25%), Gaps = 37/127 (29%)
Query: 5 QFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLIL---------EPQGFQSYK 55
+FD+I C + + +K+ F + L+EGGV I + G +
Sbjct: 101 KFDLITCCLDS--TNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFN 158
Query: 56 KKRKLTDTIWRNF-------QAIEFF------PHHFTEY-------------LLSEVGFT 89
W N I FF F E L
Sbjct: 159 YDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLN 218
Query: 90 KCETLGS 96
+ +
Sbjct: 219 ILDKVDC 225
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 36.4 bits (84), Expect = 0.001
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 5 QFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEP 48
+F + C+ + G + + R A + GV+++EP
Sbjct: 110 RFSAVTCMFSS--IGHLAGQAELDAALERFAAHVLPDGVVVVEP 151
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 36.1 bits (83), Expect = 0.002
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 5 QFDVILCL--SVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILE 47
FD ++CL S S + + + +R GG+L+++
Sbjct: 130 GFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 174
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 35.2 bits (81), Expect = 0.003
Identities = 10/96 (10%), Positives = 25/96 (26%), Gaps = 26/96 (27%)
Query: 2 EQAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLT 61
+D + + H+ + + V ++ L+ GG+ K
Sbjct: 99 AIDAYDAVWAHAC--LLHVPRDE--LADVLKLIWRALKPGGLFYASY----------KSG 144
Query: 62 DTIWRNFQAIEFFPHHFTEY-------LLSEVGFTK 90
+ R + ++ +E G
Sbjct: 145 EGEGR-----DKLARYYNYPSEEWLRARYAEAGTWA 175
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 35.3 bits (81), Expect = 0.003
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 5 QFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILE 47
+F ++ S + L+ D + ++ + L GG +L
Sbjct: 150 RFGTVVISSGS-INELDEAD--RRGLYASVREHLEPGGKFLLS 189
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 32.2 bits (73), Expect = 0.031
Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 7/92 (7%)
Query: 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDT 63
QF+ I+ ++ +W R + L+ G + G + ++
Sbjct: 115 EQFEAIMAINSLEWTE------EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRL 168
Query: 64 IWRNFQAIEFFPHHFTEYLLSEVGFTKCETLG 95
++ P F + L+ E GF + +G
Sbjct: 169 YGKDVVCNTMMPWEFEQ-LVKEQGFKVVDGIG 199
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 32.0 bits (73), Expect = 0.032
Identities = 15/124 (12%), Positives = 34/124 (27%), Gaps = 17/124 (13%)
Query: 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDT 63
D + ++ W + ++ L+ GG + E G + K +
Sbjct: 116 KPLDAVFSNAMLHWVK------EPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYN 169
Query: 64 IWRNFQAIE------FFPHHFTEY--LLSEVGFT--KCETLGSPLHPSKGFQRPIKMFTK 113
++ EY +L + GF P ++G + + +
Sbjct: 170 ALETLGIHNPQALNPWYFPSIGEYVNILEKQGFDVTYAALFNRPTTLAEGEF-GMANWIQ 228
Query: 114 GSKR 117
Sbjct: 229 MFAS 232
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 32.2 bits (73), Expect = 0.033
Identities = 12/123 (9%), Positives = 35/123 (28%), Gaps = 8/123 (6%)
Query: 5 QFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDTI 64
D ++ + HL+ + + Y++++ +++E S
Sbjct: 101 YLDGVMISHFVE--HLD--PERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINF---- 152
Query: 65 WRNFQAIEFFPHHFTEYLLSEVGFTKCETLGSPLHPSKGFQRPIKMFTKGSKRDSRSGKE 124
+ + + +++L +GF + I T + +
Sbjct: 153 YIDPTHKKPVHPETLKFILEYLGFRDVKIEFFEECEELTKLAKIDSNTVSEEVIRVINEN 212
Query: 125 INP 127
I
Sbjct: 213 IEK 215
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 31.8 bits (72), Expect = 0.046
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 2 EQAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILE 47
++ I+ + + HL ++++ ++Y L+ GGV ILE
Sbjct: 91 VADAWEGIVSI----FCHLPSSL--RQQLYPKVYQGLKPGGVFILE 130
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 31.7 bits (72), Expect = 0.048
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 2 EQAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLIL 46
FD+I+ V + + ++ M L GG L+
Sbjct: 111 TAELFDLIVVAEVLYYLE---DMTQMRTAIDNMVKMLAPGGHLVF 152
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research; 2.33A {Bacteroides vulgatus}
Length = 363
Score = 31.6 bits (72), Expect = 0.050
Identities = 16/106 (15%), Positives = 30/106 (28%), Gaps = 16/106 (15%)
Query: 6 FDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGG-VLILEP-QGFQSYKKKRKLTDT 63
FD + F + + + + R+ + + V I+E Q Y+
Sbjct: 249 FDAVWM----SQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQ 304
Query: 64 IWRNFQAIEF---FPHHFTEY--LLSEVGFTKCETLGSPLHPSKGF 104
I F A+ H + + G E + G
Sbjct: 305 ISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEEI-----QDNIGL 345
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 31.6 bits (71), Expect = 0.058
Identities = 16/110 (14%), Positives = 35/110 (31%), Gaps = 13/110 (11%)
Query: 2 EQAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLT 61
+D+I+ +W + D+ + F L G + +
Sbjct: 155 PPNTYDLIVI----QWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCS------TGDR 204
Query: 62 DTIWRNFQAIEFFPHHFTEYLLSEVGFTKCETLGSPLHPSKGFQRPIKMF 111
+ + ++ H+ L +E G + P+ F P+KM+
Sbjct: 205 FLVDKEDSSLTRSDIHYKR-LFNESGVRVVKEAFQEEWPTDLF--PLKMY 251
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent
methyltransfer structural genomics, PSI-2; HET: MSE;
1.90A {Burkholderia thailandensis}
Length = 352
Score = 30.4 bits (69), Expect = 0.14
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Query: 2 EQAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGG-VLILEP 48
E DV++ H + + V ++ GG +LIL
Sbjct: 245 EGGAADVVMLNDC---LH-YFDAREAREVIGHAAGLVKPGGALLILTM 288
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor
methylation; HET: SAH; 2.00A {Salmonella typhimurium}
SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Length = 274
Score = 29.5 bits (67), Expect = 0.28
Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 18/49 (36%)
Query: 5 QFDVILCLSV-------TKWFHLNWGDSGIKRVFMRMYAQLREGGVLIL 46
FD I C +V T+ + + R L+ G+L
Sbjct: 213 PFDAIFCRNVMIYFDKTTQ-----------EDILRRFVPLLKPDGLLFA 250
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta
subunit; N-terminal domain, AIF2 subunit beta; NMR
{Methanocaldococcus jannaschii} SCOP: d.241.1.1
Length = 52
Score = 27.4 bits (61), Expect = 0.37
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 63 TIWRNFQAIEFF----PHHFTEYLLSEVG 87
TI RNF+ + F +YLL E G
Sbjct: 9 TIIRNFRELAKAVNRDEEFFAKYLLKETG 37
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 29.1 bits (65), Expect = 0.39
Identities = 12/93 (12%), Positives = 27/93 (29%), Gaps = 8/93 (8%)
Query: 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLIL----EPQGFQSYKKKRK 59
FD ++ + H + + +VF + L+ G I+ + K+
Sbjct: 102 KTFDYVIFIDSI--VHFEPLE--LNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLV 157
Query: 60 LTDTIWRNFQAIEFFPHHFTEYLLSEVGFTKCE 92
+ W + + SE +
Sbjct: 158 VGQKYWISKVIPDQEERTVVIEFKSEQDSFRVR 190
>2r3s_A Uncharacterized protein; methyltransferase domain, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE; 2.15A {Nostoc
punctiforme}
Length = 335
Score = 28.9 bits (65), Expect = 0.45
Identities = 6/46 (13%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGG-VLILEP 48
+D++L + H ++ + +++ ++ L G V++ +
Sbjct: 231 NDYDLVLLPNF---LH-HFDVATCEQLLRKIKTALAVEGKVIVFDF 272
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 28.8 bits (64), Expect = 0.49
Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 4/45 (8%)
Query: 3 QAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILE 47
Q +D I+ V + + + + M GG ++
Sbjct: 182 QENYDFIVSTVVFMFLN----RERVPSIIKNMKEHTNVGGYNLIV 222
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 27.5 bits (60), Expect = 1.5
Identities = 5/44 (11%), Positives = 14/44 (31%), Gaps = 4/44 (9%)
Query: 2 EQAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLI 45
D+ CL V H+ + ++ + +++
Sbjct: 793 RLHDVDIGTCLEV--IEHME--EDQACEFGEKVLSLFHPKLLIV 832
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 27.1 bits (60), Expect = 1.6
Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 17/112 (15%)
Query: 5 QFDVILCLSVTKWF-HLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDT 63
++D I+ V H++ + +KR+ L EGG L L + ++ +
Sbjct: 103 RYDNIVLTHV---LEHIDDPVALLKRINDDW---LAEGGRLFLVCPNANAVSRQIAVKMG 156
Query: 64 IWRNFQAI---EFFPHH---FT----EYLLSEVGFTKCETLGSPLHPSKGFQ 105
I + A+ EF H + E S G G FQ
Sbjct: 157 IISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRSGIFFKALANFQ 208
>2q83_A YTAA protein; 2635576, structural genomics, joint center for
structu genomics, JCSG, protein structure initiative,
PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus
subtilis}
Length = 346
Score = 26.9 bits (59), Expect = 2.2
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 51 FQSYKKKRKLTDTIWRNFQAIEFFPHHF 78
+Y+ + LT+ + FP+
Sbjct: 282 LNAYESRAPLTEEQKQVMFIDMLFPYEL 309
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural
genomics, SGC, structural genomics consortium; HET: SAH;
1.75A {Homo sapiens} SCOP: c.66.1.42
Length = 241
Score = 26.6 bits (58), Expect = 3.0
Identities = 14/114 (12%), Positives = 31/114 (27%), Gaps = 22/114 (19%)
Query: 2 EQAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILE----PQGFQSYKKK 57
E +DVI +W + D + R LR G+++++ +G
Sbjct: 143 EPDSYDVIWI----QWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVD 198
Query: 58 RKLTDTIWRNFQAIEFFPHHFTEYLLSEVGFTKCETLGSPLHPSKGFQRPIKMF 111
+ ++ G + P + + + F
Sbjct: 199 SSVCRD-----------LDVVRR-IICSAGLSLLAEERQENLPDEIY--HVYSF 238
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 3.1
Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 15/87 (17%)
Query: 18 FHLNWGDSGIKRVFM-RMYAQLREGGVLIL----EPQGFQSYKKK-RKLTDTIWRNFQAI 71
++ + ++R+ + Y +L+L + + ++ + L T R Q
Sbjct: 225 LRIHSIQAELRRLLKSKPYEN----CLLVLLNVQNAKAWNAFNLSCKILLTT--RFKQVT 278
Query: 72 EFF-PHHFTEYLLSEV--GFTKCETLG 95
+F T L T E
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKS 305
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 26.3 bits (58), Expect = 3.1
Identities = 16/97 (16%), Positives = 23/97 (23%), Gaps = 18/97 (18%)
Query: 4 AQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDT 63
A FD + L H D R M LR GG + + +
Sbjct: 128 ASFDAVWALESL--HH--MPDR--GRALREMARVLRPGGTVA-----IADFVLLAPVEGA 176
Query: 64 IWRNFQAIEFFPHHFT-----EY--LLSEVGFTKCET 93
A + EY + + T
Sbjct: 177 KKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVVTST 213
>1xv5_A AGT, DNA alpha-glucosyltransferase; HET: DNA CME UDP; 1.73A
{Enterobacteria phage T4} PDB: 1y6f_A* 1y6g_A* 1ya6_A*
1y8z_A*
Length = 401
Score = 26.3 bits (57), Expect = 3.4
Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 7/83 (8%)
Query: 1 MEQAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKL 60
+E ++ C ++ F + G++ RV G + E ++++ ++L
Sbjct: 306 LEYTHLELGACGTIPV-FWKSTGENLKFRVDNTPLTSHDSGIIWFDENDMESTFERIKEL 364
Query: 61 TD-----TIWRNFQAIEFFPHHF 78
+ R +A EF H
Sbjct: 365 SSDRALYDRERE-KAYEFLYQHQ 386
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 26.1 bits (57), Expect = 3.9
Identities = 6/44 (13%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 2 EQAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLI 45
+ +D + V HL+ ++ ++ ++ R V++
Sbjct: 99 RFSGYDAATVIEV--IEHLD--ENRLQAFEKVLFEFTRPQTVIV 138
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine,
transfera; HET: KCX; 1.90A {Propionibacterium
freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5
PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Length = 539
Score = 26.1 bits (58), Expect = 4.1
Identities = 3/27 (11%), Positives = 11/27 (40%), Gaps = 5/27 (18%)
Query: 45 ILEPQGFQSY-----KKKRKLTDTIWR 66
+++P ++ +T+ + R
Sbjct: 7 LVDPNSSPREIEVSEPREVGITELVLR 33
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 25.3 bits (55), Expect = 6.3
Identities = 4/44 (9%), Positives = 13/44 (29%), Gaps = 4/44 (9%)
Query: 2 EQAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLI 45
+D + V + S + ++ + V++
Sbjct: 99 RFHGYDAATVIEVIEHL----DLSRLGAFERVLFEFAQPKIVIV 138
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP,
cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP;
2.00A {Saccharomyces cerevisiae}
Length = 447
Score = 25.4 bits (56), Expect = 6.7
Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 33 RMYAQLREGGVLILEPQG--FQ--SYKKKRKLTDTIWRNFQAIEFFPHHFTEYLLSEVG 87
+ E G+ P+G F + K + D + + + +L++E+G
Sbjct: 342 IFTSIFDELGLPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELG 400
>2nw5_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2,
protein structure initiative; 2.18A {Encephalitozoon
cuniculi} PDB: 3cmk_A* 3d0d_A* 3fm3_A 3fmq_A* 3fmr_A*
Length = 360
Score = 25.5 bits (56), Expect = 6.9
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 55 KKKRKLTDTIWRNFQAIEFFPHHFTEYLLSEVGFTKC 91
K K+ + + + + F P H Y L + G K
Sbjct: 277 KDLIKVYEFVKDSLGTLPFSPRHLDYYGLVKGGSLKS 313
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron
transport; 2.80A {Haemophilus influenzae} SCOP:
c.47.1.1 c.47.1.10
Length = 241
Score = 25.0 bits (55), Expect = 8.4
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 7 DVILCLSVTKWFHLN-WG-DSGIKRVFM 32
D IL +SV F +N W D + +
Sbjct: 70 DDILVVSVNDTFVMNAWKEDEKSENISF 97
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.441
Gapped
Lambda K H
0.267 0.0553 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,073,222
Number of extensions: 108550
Number of successful extensions: 207
Number of sequences better than 10.0: 1
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 40
Length of query: 132
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 49
Effective length of database: 4,384,350
Effective search space: 214833150
Effective search space used: 214833150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.2 bits)