RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5241
(132 letters)
>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine
N-methyltransferase, PNMTase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 263
Score = 38.3 bits (88), Expect = 9e-05
Identities = 17/116 (14%), Positives = 28/116 (24%), Gaps = 19/116 (16%)
Query: 2 EQAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLT 61
D ++ + + +R + LR GG L+L
Sbjct: 154 APLPADALVSAFCLEAVSPDLAS--FQRALDHITTLLRPGGHLLLIG-----------AL 200
Query: 62 DTIWRNFQAIEFFPHHFTE----YLLSEVGFT--KCETLGSPLHPSKGFQRPIKMF 111
+ W +E L G+ T P H G +F
Sbjct: 201 EESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTYIMPAHLQTGVDDVKGVF 256
>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase
CheR, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 193
Score = 31.7 bits (71), Expect = 0.013
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 5 QFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLIL 46
FD I C +V +F + + + R L+ G+L
Sbjct: 132 PFDAIFCRNVMIYFD----KTTQEDILRRFVPLLKPDGLLFA 169
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 251
Score = 29.3 bits (64), Expect = 0.11
Identities = 16/106 (15%), Positives = 36/106 (33%), Gaps = 6/106 (5%)
Query: 1 MEQAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKL 60
+ +FD + T + +++F ++ L+ GGV I + F + +
Sbjct: 101 AFKNEFDAVTMFFSTIMYFDEEDL---RKLFSKVAEALKPGGVFITD---FPCWFYGGRD 154
Query: 61 TDTIWRNFQAIEFFPHHFTEYLLSEVGFTKCETLGSPLHPSKGFQR 106
+W + E + V + + L L P+ +
Sbjct: 155 GPVVWNEQKGEEKLVIMDWREVEPAVQKLRFKRLVQILRPNGEVKA 200
>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Sulfolobus tokodaii [TaxId: 111955]}
Length = 224
Score = 28.3 bits (62), Expect = 0.24
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 1 MEQAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILE--PQGFQSYKKKR 58
++ D L K + + + + Y QL+EGG++IL Q K
Sbjct: 118 IKLILGDGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPIGVGRVQKLYKVI 177
Query: 59 KLTDTIWR 66
K ++
Sbjct: 178 KKGNSPSL 185
>d1k8ba_ d.241.1.1 (A:) Translation initiation factor 2 beta,
aIF2beta, N-terminal domain {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 52
Score = 25.7 bits (57), Expect = 0.43
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 63 TIWRNFQAIEFF----PHHFTEYLLSEVG 87
TI RNF+ + F +YLL E G
Sbjct: 9 TIIRNFRELAKAVNRDEEFFAKYLLKETG 37
>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 224
Score = 26.7 bits (58), Expect = 0.73
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 17 WFHLNWGDSGIKRVFMRMYAQLREGGVLIL---EPQGFQSYKKKRKLTDTIWR 66
+ + V + QL+ GG LIL G Q ++ KL D +
Sbjct: 150 PYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSIK 202
>d1neea1 d.241.1.1 (A:1-98) Translation initiation factor 2 beta,
aIF2beta, N-terminal domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 98
Score = 24.3 bits (53), Expect = 3.0
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 63 TIWRNFQ----AIEFFPHHFTEYLLSEVG 87
T +NF+ A+ P H ++LL E+G
Sbjct: 39 TFIQNFREVADALNRDPQHLLKFLLRELG 67
>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl
O-methyltransferase {Thermotoga maritima [TaxId: 2336]}
Length = 213
Score = 24.6 bits (52), Expect = 4.7
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 17 WFHLNWGDSGIKRVFMRMYAQLREGGVLIL----EPQGFQSYKKKRKLTDTIWRNF 68
+ + + G+ V + QL+EGG +I+ + Q +K + N+
Sbjct: 144 PYDVIFVTVGVDEVPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKKKDPYLVGNY 199
>d3bvua2 b.30.5.6 (A:523-1044) Golgi alpha-mannosidase II {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 522
Score = 24.6 bits (53), Expect = 4.9
Identities = 9/52 (17%), Positives = 20/52 (38%)
Query: 17 WFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKLTDTIWRNF 68
++ G + MR+ + G + + G Q K++R + N+
Sbjct: 255 RNLVDIGSLDNTEIVMRLETHIDSGDIFYTDLNGLQFIKRRRLDKLPLQANY 306
>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase
{Alfalfa (Medicago sativa) [TaxId: 3879]}
Length = 244
Score = 24.3 bits (52), Expect = 5.3
Identities = 16/106 (15%), Positives = 30/106 (28%), Gaps = 8/106 (7%)
Query: 1 MEQAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEP-----QGFQSYK 55
D +L + + +K+ + + G V I++ +
Sbjct: 134 TSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVT 193
Query: 56 KKRKLTDTIWRNFQAIEFFPHHFTEYLLSEVGFT--KCETLGSPLH 99
+ + L D E + + L E GF K L L
Sbjct: 194 QIKLLMDVNMACLNGKERNEEEWKK-LFIEAGFQHYKISPLTGFLS 238
>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 215
Score = 24.4 bits (52), Expect = 5.3
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 10/59 (16%)
Query: 34 MYAQLREGGVLIL---EPQGFQSYKKKRKLTDTI-WRNFQAIEFFPHHFTEYLLSEVGF 88
+ QL+ GG LI+ +Q + RK D I +N + F P L+ E G+
Sbjct: 162 LIEQLKIGGKLIIPVGSYHLWQELLEVRKTKDGIKIKNHGGVAFVP------LIGEYGW 214
>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 104
Score = 23.8 bits (51), Expect = 5.7
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 61 TDTIWRNFQAIEFFPHHFTEYLLSEVGFTKCET 93
T W +++ F HF LS+ G C T
Sbjct: 55 LYTSWEENRSVPVFVLHFKPIHLSDNGSYSCST 87
>d2g5da1 b.52.1.4 (A:40-441) Membrane-bound lytic murein
transglycosylase A, MLTA {Neisseria gonorrhoeae [TaxId:
485]}
Length = 402
Score = 24.2 bits (52), Expect = 6.3
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 9/59 (15%)
Query: 58 RKLTDTIWRNFQAIEFFPHHFTEYLLSEVGFTKC--------ETLGSPLHPSKGFQRPI 108
+ T +FQA FF +FT + ++ G G ++ + PI
Sbjct: 63 AQAFQTPIHSFQAKRFFERYFTPWQVAGNGSLAGTVTGYYEPVLKGD-GRRTERARFPI 120
>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 152
Score = 23.8 bits (51), Expect = 7.9
Identities = 9/52 (17%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 23 GDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKK-RKLTDTIWRNFQAIEF 73
G+ GI+ V + + A+L + G + + + +K R + + + +
Sbjct: 101 GEYGIENVAVGVPAKLGKNGAEVADIKLSDEEIEKLRNSAKILRERLEELGY 152
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 226
Score = 23.6 bits (49), Expect = 9.3
Identities = 11/90 (12%), Positives = 32/90 (35%), Gaps = 4/90 (4%)
Query: 1 MEQAQFDVILCLSVTKWFHLNWGDSGIKRVFMRMYAQLREGGVLILEPQGFQSYKKKRKL 60
E FD ++ + +++ + +VF + L+ G I+ + + K
Sbjct: 98 FEDKTFDYVIFIDS----IVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKE 153
Query: 61 TDTIWRNFQAIEFFPHHFTEYLLSEVGFTK 90
+ + + + + P ++ E +
Sbjct: 154 SLVVGQKYWISKVIPDQEERTVVIEFKSEQ 183
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.441
Gapped
Lambda K H
0.267 0.0533 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 523,546
Number of extensions: 22469
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 21
Length of query: 132
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 56
Effective length of database: 1,364,116
Effective search space: 76390496
Effective search space used: 76390496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.7 bits)