BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy5242
         (217 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1RZ4|A Chain A, Crystal Structure Of Human Eif3k
          Length = 226

 Score =  236 bits (603), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 117/217 (53%), Positives = 150/217 (69%), Gaps = 1/217 (0%)

Query: 1   MTQAELMKGSVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFHQNY 60
           M   E  + +V +LL GI+RYNPE+L+TLE+YVE Q  EN YDLEANLAVLKLYQF+  +
Sbjct: 1   MAMFEQXRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAF 60

Query: 61  -NMKITSQILLKALTNFPHTDFIXXXXXXXXXXXXEDPIDQIIYLADLLESCKFTQFWSR 119
               +T+QILLKALTN PHTDF             E PI QI+YL DLLE+C F  FW  
Sbjct: 61  FQTTVTAQILLKALTNLPHTDFTLCKCXIDQAHQEERPIRQILYLGDLLETCHFQAFWQA 120

Query: 120 MHTIPDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWK 179
           +    DL   I GF DS+RKF+CHVVGIT+Q ID+ LL+E L  + DS L++W  KYGW 
Sbjct: 121 LDENXDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEXLGDLSDSQLKVWXSKYGWS 180

Query: 180 ELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSN 216
             ++G IFI +Q+E+IK KNI EKI+F++ ++I  S+
Sbjct: 181 ADESGQIFICSQEESIKPKNIVEKIDFDSVSSIXASS 217


>pdb|2HI9|A Chain A, Crystal Structure Of Human Native Protein C Inhibitor
 pdb|2HI9|B Chain B, Crystal Structure Of Human Native Protein C Inhibitor
 pdb|2HI9|C Chain C, Crystal Structure Of Human Native Protein C Inhibitor
          Length = 363

 Score = 30.0 bits (66), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 8/53 (15%)

Query: 138 RKFVCHVVGITFQTIDKKL--------LSELLDGVEDSTLRLWVKKYGWKELD 182
           R   C VVG+ +Q     L        + ++ +G+ + TLR W+K +  ++L+
Sbjct: 205 RNLSCRVVGVPYQGNATALFILPSEGKMQQVENGLSEKTLRKWLKMFKKRQLE 257


>pdb|2OL2|A Chain A, High Resolution Structure Of Native Pci In Space Group P21
 pdb|2OL2|B Chain B, High Resolution Structure Of Native Pci In Space Group P21
 pdb|3B9F|I Chain I, 1.6 A Structure Of The Pci-Thrombin-Heparin Complex
          Length = 395

 Score = 30.0 bits (66), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 8/53 (15%)

Query: 138 RKFVCHVVGITFQTIDKKL--------LSELLDGVEDSTLRLWVKKYGWKELD 182
           R   C VVG+ +Q     L        + ++ +G+ + TLR W+K +  ++L+
Sbjct: 237 RNLSCRVVGVPYQGNATALFILPSEGKMQQVENGLSEKTLRKWLKMFKKRQLE 289


>pdb|1LQ8|A Chain A, Crystal Structure Of Cleaved Protein C Inhibitor
 pdb|1LQ8|C Chain C, Crystal Structure Of Cleaved Protein C Inhibitor
 pdb|1LQ8|E Chain E, Crystal Structure Of Cleaved Protein C Inhibitor
 pdb|1LQ8|G Chain G, Crystal Structure Of Cleaved Protein C Inhibitor
          Length = 346

 Score = 30.0 bits (66), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 8/53 (15%)

Query: 138 RKFVCHVVGITFQTIDKKL--------LSELLDGVEDSTLRLWVKKYGWKELD 182
           R   C VVG+ +Q     L        + ++ +G+ + TLR W+K +  ++L+
Sbjct: 219 RNLSCRVVGVPYQGNATALFILPSEGKMQQVENGLSEKTLRKWLKMFKKRQLE 271


>pdb|3DY0|A Chain A, Crystal Structure Of Cleaved Pci Bound To Heparin
          Length = 336

 Score = 30.0 bits (66), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 8/53 (15%)

Query: 138 RKFVCHVVGITFQTIDKKL--------LSELLDGVEDSTLRLWVKKYGWKELD 182
           R   C VVG+ +Q     L        + ++ +G+ + TLR W+K +  ++L+
Sbjct: 212 RNLSCRVVGVPYQGNATALFILPSEGKMQQVENGLSEKTLRKWLKMFKKRQLE 264


>pdb|3R2T|A Chain A, 2.2 Angstrom Resolution Crystal Structure Of
           Superantigen-Like Protein From Staphylococcus Aureus
           Subsp. Aureus Nctc 8325.
 pdb|3R2T|B Chain B, 2.2 Angstrom Resolution Crystal Structure Of
           Superantigen-Like Protein From Staphylococcus Aureus
           Subsp. Aureus Nctc 8325
          Length = 249

 Score = 29.3 bits (64), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 170 RLWVKKYGWKE--LDNGYIFIANQDENIKTKNITEKIEFENAATIMTS 215
           +L +KKY   E   D G I I  +DEN    ++++K++FE  A ++ S
Sbjct: 191 KLLIKKYKLYEGSADKGRIVINMKDENKYEIDLSDKLDFERMADVINS 238


>pdb|1YFJ|A Chain A, T4dam In Complex With Adohcy And 15-Mer Oligonucleotide
           Showing Semi-Specific And Specific Contact
 pdb|1YFJ|B Chain B, T4dam In Complex With Adohcy And 15-Mer Oligonucleotide
           Showing Semi-Specific And Specific Contact
 pdb|1YFJ|C Chain C, T4dam In Complex With Adohcy And 15-Mer Oligonucleotide
           Showing Semi-Specific And Specific Contact
 pdb|1YFJ|D Chain D, T4dam In Complex With Adohcy And 15-Mer Oligonucleotide
           Showing Semi-Specific And Specific Contact
 pdb|1YFJ|E Chain E, T4dam In Complex With Adohcy And 15-Mer Oligonucleotide
           Showing Semi-Specific And Specific Contact
 pdb|1YFJ|F Chain F, T4dam In Complex With Adohcy And 15-Mer Oligonucleotide
           Showing Semi-Specific And Specific Contact
 pdb|1YFL|A Chain A, T4dam In Complex With Sinefungin And 16-Mer
           Oligonucleotide Showing Semi-Specific And Specific
           Contact And Flipped Base
 pdb|1YFL|B Chain B, T4dam In Complex With Sinefungin And 16-Mer
           Oligonucleotide Showing Semi-Specific And Specific
           Contact And Flipped Base
 pdb|1YFL|D Chain D, T4dam In Complex With Sinefungin And 16-Mer
           Oligonucleotide Showing Semi-Specific And Specific
           Contact And Flipped Base
 pdb|1YFL|E Chain E, T4dam In Complex With Sinefungin And 16-Mer
           Oligonucleotide Showing Semi-Specific And Specific
           Contact And Flipped Base
          Length = 259

 Score = 27.3 bits (59), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 157 LSELLD--GVEDSTLRLWVKKYGWKELDNGYIF 187
           LS +L+  G E++ L+ W KKY  K L+  Y+F
Sbjct: 209 LSNVLEHHGKENTLLKEWSKKYNVKHLNKKYVF 241


>pdb|1YF3|A Chain A, T4dam In Complex With Adohcy And 13-Mer Oligonucleotide
           Making Non- And Semi-Specific (~14) CONTACT
 pdb|1YF3|B Chain B, T4dam In Complex With Adohcy And 13-Mer Oligonucleotide
           Making Non- And Semi-Specific (~14) CONTACT
          Length = 259

 Score = 27.3 bits (59), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 157 LSELLD--GVEDSTLRLWVKKYGWKELDNGYIF 187
           LS +L+  G E++ L+ W KKY  K L+  Y+F
Sbjct: 209 LSNVLEHHGKENTLLKEWSKKYNVKHLNKKYVF 241


>pdb|3M3W|A Chain A, Crystal Strcuture Of Mouse Pacsin3 Bar Domain Mutant
 pdb|3M3W|B Chain B, Crystal Strcuture Of Mouse Pacsin3 Bar Domain Mutant
          Length = 320

 Score = 26.9 bits (58), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 3   QAELMKGSVDQLLVGIERYNPEHLSTLEKYVE-VQCAEN 40
           +AE MK   +Q L  + RY P ++  +E+  E  Q AE 
Sbjct: 198 EAEKMKTQYEQTLAELNRYTPRYMEDMEQAFESCQAAER 236


>pdb|3QE6|A Chain A, Mouse Pacsin 3 F-Bar Domain Structure
 pdb|3QE6|B Chain B, Mouse Pacsin 3 F-Bar Domain Structure
          Length = 304

 Score = 26.9 bits (58), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 3   QAELMKGSVDQLLVGIERYNPEHLSTLEKYVE-VQCAEN 40
           +AE MK   +Q L  + RY P ++  +E+  E  Q AE 
Sbjct: 198 EAEKMKTQYEQTLAELNRYTPRYMEDMEQAFESCQAAER 236


>pdb|3SYV|A Chain A, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
 pdb|3SYV|B Chain B, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
 pdb|3SYV|C Chain C, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
 pdb|3SYV|D Chain D, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
 pdb|3SYV|E Chain E, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
 pdb|3SYV|F Chain F, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
 pdb|3SYV|G Chain G, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
 pdb|3SYV|H Chain H, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
          Length = 347

 Score = 26.9 bits (58), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 3   QAELMKGSVDQLLVGIERYNPEHLSTLEKYVE-VQCAEN 40
           +AE MK   +Q L  + RY P ++  +E+  E  Q AE 
Sbjct: 204 EAEKMKTQYEQTLAELNRYTPRYMEDMEQAFESCQAAER 242


>pdb|4FZI|A Chain A, Crystal Structure Of Prostaglandin F Synthase From
           Trypanosoma Cruzi
 pdb|4FZI|B Chain B, Crystal Structure Of Prostaglandin F Synthase From
           Trypanosoma Cruzi
 pdb|4GIE|A Chain A, Crystal Structure Of Prostaglandin F Synthase From
           Trypanosoma Cruzi Bound To Nadp
          Length = 290

 Score = 26.9 bits (58), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 13/51 (25%), Positives = 26/51 (50%)

Query: 16  VGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFHQNYNMKITS 66
           +G+  + P HL+ L K  +++   N  +L        L +F + +N+ IT+
Sbjct: 145 IGVSNFEPHHLTELFKSCKIRPMVNQVELHPLFQQRTLREFCKQHNIAITA 195


>pdb|1Q0S|A Chain A, Binary Structure Of T4dam With Adohcy
 pdb|1Q0T|A Chain A, Ternary Structure Of T4dam With Adohcy And Dna
 pdb|1Q0T|B Chain B, Ternary Structure Of T4dam With Adohcy And Dna
          Length = 259

 Score = 26.9 bits (58), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 163 GVEDSTLRLWVKKYGWKELDNGYIF 187
           G E++ L+ W KKY  K L+  Y+F
Sbjct: 217 GKENTLLKEWSKKYNVKHLNKKYVF 241


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,754,295
Number of Sequences: 62578
Number of extensions: 215016
Number of successful extensions: 686
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 674
Number of HSP's gapped (non-prelim): 25
length of query: 217
length of database: 14,973,337
effective HSP length: 95
effective length of query: 122
effective length of database: 9,028,427
effective search space: 1101468094
effective search space used: 1101468094
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)