Query psy5242
Match_columns 217
No_of_seqs 131 out of 189
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 21:22:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5242.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5242hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rz4_A Eukaryotic translation 100.0 8.2E-77 2.8E-81 510.3 17.9 216 1-216 1-217 (226)
2 4b4t_T 26S proteasome regulato 99.4 2.2E-12 7.6E-17 112.9 12.9 166 27-192 60-240 (274)
3 4b0z_A RPN12, 26S proteasome r 99.4 5.7E-12 2E-16 107.5 14.0 163 27-189 57-228 (229)
4 3t5v_A Nuclear mRNA export pro 98.6 4.7E-07 1.6E-11 80.7 13.2 159 22-183 54-256 (316)
5 4b4t_R RPN7, 26S proteasome re 97.5 0.00028 9.6E-09 64.4 9.2 129 62-193 247-395 (429)
6 3txn_A 26S proteasome regulato 96.9 0.0036 1.2E-07 57.1 9.5 126 62-191 220-362 (394)
7 1ufm_A COP9 complex subunit 4; 95.9 0.0087 3E-07 43.1 4.6 44 131-175 10-53 (84)
8 4b4t_Q 26S proteasome regulato 95.0 0.12 4.1E-06 44.4 9.4 81 94-175 292-379 (434)
9 4b4t_P 26S proteasome regulato 94.4 0.2 6.9E-06 45.7 9.8 110 64-175 260-382 (445)
10 4b4t_O 26S proteasome regulato 91.6 7.1 0.00024 34.8 15.9 136 39-175 182-330 (393)
11 4b4t_S RPN3, 26S proteasome re 74.3 1.3 4.4E-05 41.7 2.1 77 98-175 342-425 (523)
12 2heo_A Z-DNA binding protein 1 69.2 9 0.00031 25.3 4.9 43 135-178 9-54 (67)
13 1us7_B HSP90 CO-chaperone CDC3 67.4 7.4 0.00025 33.5 5.1 128 43-177 54-224 (265)
14 2p9x_A Hypothetical protein PH 64.4 3.9 0.00013 29.8 2.4 38 1-40 1-38 (99)
15 3dkw_A DNR protein; CRP-FNR, H 59.8 29 0.00098 26.9 7.1 56 136-192 152-221 (227)
16 3dv8_A Transcriptional regulat 56.3 25 0.00087 27.0 6.2 40 151-191 169-211 (220)
17 3e21_A HFAF1, FAS-associated f 55.2 10 0.00036 23.7 2.9 27 154-181 9-36 (45)
18 2htj_A P fimbrial regulatory p 53.6 18 0.00062 24.3 4.3 41 138-180 2-45 (81)
19 2fmy_A COOA, carbon monoxide o 49.9 43 0.0015 25.9 6.6 41 150-191 166-210 (220)
20 3t5x_A PCI domain-containing p 48.8 96 0.0033 24.8 8.7 75 101-175 83-170 (203)
21 3ryp_A Catabolite gene activat 47.5 58 0.002 24.7 6.9 39 151-190 167-208 (210)
22 3iwz_A CAP-like, catabolite ac 45.9 64 0.0022 24.8 7.1 39 151-190 187-228 (230)
23 3jth_A Transcription activator 43.3 18 0.00062 24.9 3.0 49 129-180 16-67 (98)
24 2oqg_A Possible transcriptiona 43.3 31 0.0011 24.1 4.4 48 130-180 15-65 (114)
25 1r1u_A CZRA, repressor protein 42.9 31 0.0011 24.2 4.3 47 131-180 21-70 (106)
26 4ev0_A Transcription regulator 42.2 59 0.002 24.8 6.2 54 137-191 142-205 (216)
27 1y0u_A Arsenical resistance op 41.4 32 0.0011 23.6 4.1 47 130-180 25-74 (96)
28 3e97_A Transcriptional regulat 41.3 66 0.0023 24.9 6.5 41 150-191 174-217 (231)
29 2zcw_A TTHA1359, transcription 40.9 69 0.0024 24.3 6.5 41 150-191 145-188 (202)
30 3lsg_A Two-component response 40.5 61 0.0021 22.3 5.6 41 139-180 5-48 (103)
31 2lnb_A Z-DNA-binding protein 1 39.9 76 0.0026 22.3 5.7 44 131-175 14-57 (80)
32 1v92_A NSFL1 cofactor P47; 3-h 39.9 25 0.00086 21.2 3.0 27 154-181 9-35 (46)
33 1ng7_A Poliovirus 3A-N, genome 39.8 6.5 0.00022 26.3 0.2 23 158-180 23-45 (60)
34 1u2w_A CADC repressor, cadmium 39.7 42 0.0014 24.3 4.7 50 129-180 35-87 (122)
35 3f6o_A Probable transcriptiona 39.5 25 0.00084 25.4 3.4 52 126-180 8-62 (118)
36 3chm_A COP9 signalosome comple 39.2 1.4E+02 0.0047 23.4 8.4 76 99-178 60-140 (169)
37 2gau_A Transcriptional regulat 38.9 90 0.0031 24.1 6.9 41 150-191 179-222 (232)
38 3la7_A Global nitrogen regulat 38.2 1.3E+02 0.0044 23.6 7.9 42 150-192 192-236 (243)
39 1g2h_A Transcriptional regulat 38.1 52 0.0018 21.1 4.5 38 137-178 22-59 (61)
40 2lju_A Putative oxidoreductase 37.9 42 0.0014 24.9 4.4 39 164-207 67-105 (108)
41 3b02_A Transcriptional regulat 36.4 60 0.002 24.6 5.4 40 151-191 139-181 (195)
42 2krk_A 26S protease regulatory 36.1 39 0.0013 23.3 3.8 42 137-178 15-59 (86)
43 3mn2_A Probable ARAC family tr 36.1 76 0.0026 22.0 5.5 65 149-214 16-89 (108)
44 4ady_A RPN2, 26S proteasome re 35.8 29 0.00098 35.0 4.1 67 24-90 172-243 (963)
45 1zyb_A Transcription regulator 35.8 85 0.0029 24.5 6.4 41 150-191 185-228 (232)
46 2bgc_A PRFA; bacterial infecti 34.9 70 0.0024 25.1 5.7 40 151-191 169-212 (238)
47 3pqk_A Biofilm growth-associat 34.7 34 0.0012 23.6 3.4 51 127-180 14-67 (102)
48 1ub9_A Hypothetical protein PH 34.6 68 0.0023 21.4 4.9 48 131-180 11-61 (100)
49 3cuo_A Uncharacterized HTH-typ 34.4 39 0.0013 22.8 3.6 47 132-180 20-69 (99)
50 2cp8_A NEXT to BRCA1 gene 1 pr 34.3 22 0.00074 23.2 2.0 20 35-54 14-34 (54)
51 3dwl_G Actin-related protein 2 34.1 70 0.0024 25.1 5.3 69 102-174 41-109 (152)
52 3e6c_C CPRK, cyclic nucleotide 33.7 1.3E+02 0.0044 23.6 7.2 41 150-191 176-219 (250)
53 3e7l_A Transcriptional regulat 33.7 92 0.0032 19.8 6.3 40 138-180 21-60 (63)
54 2kko_A Possible transcriptiona 33.2 20 0.00067 25.6 1.9 49 129-180 18-69 (108)
55 3kw6_A 26S protease regulatory 33.2 71 0.0024 21.1 4.7 41 137-177 7-50 (78)
56 1y6u_A XIS, excisionase from t 33.1 67 0.0023 21.5 4.5 32 151-183 16-50 (70)
57 2k9s_A Arabinose operon regula 32.4 70 0.0024 22.2 4.8 72 140-214 7-89 (107)
58 1r1t_A Transcriptional repress 31.9 47 0.0016 24.2 3.9 46 132-180 42-90 (122)
59 2oz6_A Virulence factor regula 31.4 70 0.0024 24.1 5.0 38 151-189 164-204 (207)
60 3rkx_A Biotin-[acetyl-COA-carb 31.0 1.2E+02 0.0042 26.0 7.0 56 136-192 3-65 (323)
61 1uly_A Hypothetical protein PH 30.9 64 0.0022 25.6 4.8 49 129-180 13-64 (192)
62 1j9i_A GPNU1 DBD;, terminase s 30.9 23 0.00079 23.1 1.8 23 152-175 3-25 (68)
63 2jya_A AGR_C_3324P, uncharacte 30.3 40 0.0014 24.9 3.1 40 164-208 59-98 (106)
64 3kcc_A Catabolite gene activat 30.3 1.6E+02 0.0054 23.5 7.2 39 151-190 217-258 (260)
65 3oio_A Transcriptional regulat 30.3 69 0.0023 22.5 4.5 70 142-214 13-92 (113)
66 3f6v_A Possible transcriptiona 29.7 41 0.0014 25.7 3.3 52 126-180 48-102 (151)
67 3oou_A LIN2118 protein; protei 29.5 97 0.0033 21.4 5.1 62 150-214 20-90 (108)
68 2pjp_A Selenocysteine-specific 29.4 1.2E+02 0.0042 21.8 5.8 32 149-181 78-112 (121)
69 3aji_B S6C, proteasome (prosom 29.3 65 0.0022 21.5 4.0 43 136-178 4-49 (83)
70 3mkl_A HTH-type transcriptiona 29.1 83 0.0028 22.3 4.8 72 140-214 11-91 (120)
71 3d0s_A Transcriptional regulat 28.7 63 0.0021 24.9 4.4 40 151-191 177-219 (227)
72 1ft9_A Carbon monoxide oxidati 28.5 1.1E+02 0.0037 23.5 5.7 40 151-191 163-206 (222)
73 1qbj_A Protein (double-strande 28.2 1.4E+02 0.0049 20.3 5.8 45 134-180 8-58 (81)
74 1tc3_C Protein (TC3 transposas 28.0 85 0.0029 17.6 4.6 37 135-175 8-44 (51)
75 2cfx_A HTH-type transcriptiona 27.8 92 0.0032 22.9 5.0 44 135-180 4-50 (144)
76 2ccq_A P97, peptide N-glycanas 27.7 50 0.0017 23.8 3.3 56 134-191 22-83 (99)
77 1jko_C HIN recombinase, DNA-in 26.0 42 0.0014 19.5 2.3 27 151-178 21-47 (52)
78 2w25_A Probable transcriptiona 25.7 1.1E+02 0.0038 22.5 5.1 44 135-180 6-52 (150)
79 3vjj_A P9-1; 3.00A {Rice black 25.6 45 0.0015 29.1 3.0 54 124-178 245-308 (368)
80 3vlf_B 26S protease regulatory 25.5 1.1E+02 0.0038 20.8 4.7 41 138-178 6-49 (88)
81 2jsc_A Transcriptional regulat 25.5 67 0.0023 23.0 3.7 50 128-180 13-65 (118)
82 1bl0_A Protein (multiple antib 25.5 90 0.0031 22.5 4.5 39 141-180 16-56 (129)
83 2lkp_A Transcriptional regulat 25.4 82 0.0028 22.2 4.2 43 135-180 31-76 (119)
84 3fx3_A Cyclic nucleotide-bindi 25.4 63 0.0022 25.1 3.8 38 152-191 179-219 (237)
85 2d1h_A ST1889, 109AA long hypo 25.1 1.4E+02 0.0048 19.9 5.2 47 132-180 18-67 (109)
86 3f2g_A Alkylmercury lyase; MER 24.7 2E+02 0.007 23.6 6.9 50 135-186 21-71 (220)
87 2jt1_A PEFI protein; solution 24.1 1.4E+02 0.0047 20.3 4.9 41 138-180 6-55 (77)
88 1oyi_A Double-stranded RNA-bin 23.6 1E+02 0.0036 21.5 4.2 42 136-180 17-61 (82)
89 2pn6_A ST1022, 150AA long hypo 23.1 1.1E+02 0.0038 22.4 4.7 43 135-179 2-47 (150)
90 2o3f_A Putative HTH-type trans 23.1 1.8E+02 0.0063 20.7 5.7 50 129-179 15-66 (111)
91 1taf_A TFIID TBP associated fa 22.6 41 0.0014 22.7 1.8 30 10-39 6-37 (68)
92 2dzl_A Protein FAM100B; UBA-li 22.3 56 0.0019 21.8 2.5 26 155-181 22-47 (66)
93 2gxg_A 146AA long hypothetical 22.1 1.5E+02 0.005 21.0 5.1 41 137-180 38-81 (146)
94 2zkz_A Transcriptional repress 21.7 1E+02 0.0036 21.2 4.0 46 128-175 19-64 (99)
95 1q1h_A TFE, transcription fact 21.7 66 0.0023 22.4 2.9 43 136-179 18-63 (110)
96 2dbb_A Putative HTH-type trans 21.6 1.2E+02 0.0042 22.2 4.7 44 135-180 8-54 (151)
97 2kvv_A Putative excisionase; D 21.4 78 0.0027 22.1 3.1 27 152-180 11-37 (78)
98 2hr3_A Probable transcriptiona 21.3 1.8E+02 0.0063 20.5 5.5 43 137-180 36-81 (147)
99 2dal_A Protein KIAA0794; FAS a 21.3 63 0.0022 21.1 2.5 26 155-181 20-45 (62)
100 2cg4_A Regulatory protein ASNC 21.3 1.2E+02 0.0043 22.3 4.6 43 135-179 7-52 (152)
101 1ru0_A DCOH-like protein dcohm 21.0 62 0.0021 23.4 2.7 20 164-183 10-32 (105)
102 3jst_A Putative pterin-4-alpha 20.9 66 0.0023 22.9 2.8 20 164-183 6-26 (97)
103 3gbg_A TCP pilus virulence reg 20.8 1.3E+02 0.0044 24.2 5.0 70 141-214 174-253 (276)
104 3kxe_C Antitoxin protein PARD- 20.7 92 0.0031 21.9 3.5 55 22-77 7-63 (88)
105 2ebb_A Pterin-4-alpha-carbinol 20.6 70 0.0024 23.0 2.9 20 164-183 3-23 (101)
106 1sfx_A Conserved hypothetical 20.3 2E+02 0.0067 19.0 5.4 43 136-180 20-65 (109)
No 1
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=100.00 E-value=8.2e-77 Score=510.26 Aligned_cols=216 Identities=56% Similarity=1.005 Sum_probs=209.2
Q ss_pred CchHHHHHHHHHHHhccccCCCCCchhHHHHHHHHHHhccccchHhhHHHHHhhhcCCC-CChHHHHHHHHHHhhcCCCc
Q psy5242 1 MTQAELMKGSVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFHQN-YNMKITSQILLKALTNFPHT 79 (217)
Q Consensus 1 ~~~~~~~~~~i~~~l~g~~rYnp~~l~~Le~yv~~Q~~~~~Yd~~aNlalLKLYqfnP~-~~~~vv~~ILlkaL~~~P~~ 79 (217)
|+|+++|+++|+++|+|+|||||+++++||+||++|+.+++||++||||+||||||||+ ++.+++++||+||||++|++
T Consensus 1 ~~~~~~~~~~i~~~l~~~~rYnp~~l~~le~Yv~qq~~~~~YD~~anlalLklYq~~p~~~~~~ii~~iLlk~L~~~p~~ 80 (226)
T 1rz4_A 1 MAMFEQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAFFQTTVTAQILLKALTNLPHT 80 (226)
T ss_dssp -CHHHHHHHHHHHHHHSGGGGCGGGHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTTST
T ss_pred CCcchhhhHHHHHHHhccccCCHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred chhhhhhccCCCCCCCccHHHHHHHHHHHHhCChHHHHHHhhcCCchhhhccchHHHHHHHHHHHHHHhcccccHHHHHH
Q psy5242 80 DFILCKCLLSKDLCKEDPIDQIIYLADLLESCKFTQFWSRMHTIPDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSE 159 (217)
Q Consensus 80 DF~lc~~LIp~~~~~~~~i~~l~~L~~lLe~c~F~~FW~~l~~~~~l~~~i~gFed~IR~~I~~vVs~tyqsIs~~~La~ 159 (217)
||.+|+||||++++++|+|+++|.|+++||+|+|++||++++++++++..|+||+|+||++|+++|++||++|+++.+++
T Consensus 81 DF~~~l~LIp~~~~~~~~I~~i~~L~~~L~~~~y~~fW~~l~~~~~l~~~i~gf~dsIR~~I~~~i~~aY~sI~~~~la~ 160 (226)
T 1rz4_A 81 DFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQALDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAE 160 (226)
T ss_dssp HHHHHHHTSCHHHHTSTTHHHHHHHHHHHHTTCHHHHHHHSCTTCHHHHTSTTHHHHHHHHHHHHHHHHCSEECHHHHHH
T ss_pred HHHHHHHhCChhhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcChhHHHHHhHHHHHHHHHHHHHHHHHHhhCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCHHHHHHHHHHcCceEeCCceEEeCCCCccccccccccccccchHHHHhhhc
Q psy5242 160 LLDGVEDSTLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTSN 216 (217)
Q Consensus 160 ~LG~ls~~el~~~v~~~GWt~~~~g~v~p~n~en~~k~~~i~E~i~~~~~~~~~~~~ 216 (217)
|||+++++++++|++++||+++++|.++++|+||++|+|+|+|+|+||+|+++|++.
T Consensus 161 lLg~~s~~el~~fi~~~GW~vd~~g~I~~~n~e~~~k~~~~~E~i~~~~~~~~~~~~ 217 (226)
T 1rz4_A 161 MLGDLSDSQLKVWMSKYGWSADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASS 217 (226)
T ss_dssp HTTSCCHHHHHHHHHHHTCEECC--CEECCCHHHHTSCCCSSCCCCHHHHHHHHCC-
T ss_pred HHcCCCHHHHHHHHHHCCCEECCCccEEeCCCcccccceeeeecccHHHHHHHHHHH
Confidence 998799999999999999999888888999999999999999999999999999875
No 2
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.40 E-value=2.2e-12 Score=112.94 Aligned_cols=166 Identities=17% Similarity=0.197 Sum_probs=134.6
Q ss_pred hHHHHHHHHHHhccccc-hHhhHHHHHhhhcCCC-------CChHHHHHHHHHHhhcCCCcchhhhhhccCCC---CCCC
Q psy5242 27 STLEKYVEVQCAENVYD-LEANLAVLKLYQFHQN-------YNMKITSQILLKALTNFPHTDFILCKCLLSKD---LCKE 95 (217)
Q Consensus 27 ~~Le~yv~~Q~~~~~Yd-~~aNlalLKLYqfnP~-------~~~~vv~~ILlkaL~~~P~~DF~lc~~LIp~~---~~~~ 95 (217)
.++|-.+..-++.+..+ ++-+.+-||-|-+.+. -..++++-=||--|.+--.+||..-+-.||.. ++.+
T Consensus 60 ~v~E~~a~~si~~~D~~~F~~~~~QLk~~Y~d~~~~l~~s~~~~e~~~~~LLylL~~n~~~efh~~Le~L~~~~~~~~~d 139 (274)
T 4b4t_T 60 RILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDKKSKLISLYLLNLLSQNNTTKFHSELQYLDKHIKNLEDD 139 (274)
T ss_dssp -CHHHHHHCCSSCSSHHHHHHHHHHHHHHTTTTSSCSSCSHHHHHHHHHHHHHHHHHHCSTHHHHHHHSSSCSSSTTTCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhccCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhHhHhcC
Confidence 57888888888876554 7778899998876543 23467777778888877889999999999964 4578
Q ss_pred ccHHHHHHHHHHHHhCChHHHHHHhhcCCc----hhhhccchHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHH
Q psy5242 96 DPIDQIIYLADLLESCKFTQFWSRMHTIPD----LFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRL 171 (217)
Q Consensus 96 ~~i~~l~~L~~lLe~c~F~~FW~~l~~~~~----l~~~i~gFed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~ 171 (217)
|-|+..+.|.+.|...+|..||+.+++.+. +.--+.-|.+.||..|+..+..||.+|+.+.++++||.-+++|+.+
T Consensus 140 ~~Ik~al~le~al~eGnY~kff~l~~~~~~p~~~~~~f~d~l~~~iR~~a~~~i~kaY~~i~l~~~~~~L~F~s~~e~~~ 219 (274)
T 4b4t_T 140 SLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFDSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEK 219 (274)
T ss_dssp HHHHHHHHHHHHHHHTCSHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHTCCSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhCCCCHHHHHH
Confidence 999999999999999999999999987432 2346677889999999999999999999999999998667799999
Q ss_pred HHHHcCceEeCCceEEeCCCC
Q psy5242 172 WVKKYGWKELDNGYIFIANQD 192 (217)
Q Consensus 172 ~v~~~GWt~~~~g~v~p~n~e 192 (217)
|+++.||++++++++|+..++
T Consensus 220 F~~~~gW~~~~~~v~F~~~~~ 240 (274)
T 4b4t_T 220 FALERNWPIVNSKVYFNNQSK 240 (274)
T ss_dssp HHHHTTCCCCSSCCCC-----
T ss_pred HHHHcCCEEeCCEeEECCccc
Confidence 999999999877778875543
No 3
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=99.39 E-value=5.7e-12 Score=107.45 Aligned_cols=163 Identities=12% Similarity=0.067 Sum_probs=120.2
Q ss_pred hHHHHHHHHHHhcccc-chHhhHHHHHhhhcC--C-C-CChHHHHHHHHHHhhcCCCcchhhhhhccCCCC--CCCccHH
Q psy5242 27 STLEKYVEVQCAENVY-DLEANLAVLKLYQFH--Q-N-YNMKITSQILLKALTNFPHTDFILCKCLLSKDL--CKEDPID 99 (217)
Q Consensus 27 ~~Le~yv~~Q~~~~~Y-d~~aNlalLKLYqfn--P-~-~~~~vv~~ILlkaL~~~P~~DF~lc~~LIp~~~--~~~~~i~ 99 (217)
.++|--...-++.+.. .++-..+-||-|=.+ | . ...++++--||--|..--.+||...+..+|+.. +++|-|+
T Consensus 57 ~vyE~~a~~al~~~D~~~F~~~~~qLk~~Y~~~~~~s~~~~e~~~~~LL~lL~~~~~~ef~~~le~l~~~~~~~~~~~I~ 136 (229)
T 4b0z_A 57 NVFEYGVLVSIQTCDIESFARYASQVIPFYHDSLVPSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVE 136 (229)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSCCCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTTHHHHCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCCCCccHHHHHHHHHHHHHHcCCchHHHHHHHhcChHHHhhcCHHHH
Confidence 3444444444444421 223344444433333 2 2 334555555555555556699999999999763 5789999
Q ss_pred HHHHHHHHHHhCChHHHHHHhhcCC--chhhhccchHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHHHcC
Q psy5242 100 QIIYLADLLESCKFTQFWSRMHTIP--DLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYG 177 (217)
Q Consensus 100 ~l~~L~~lLe~c~F~~FW~~l~~~~--~l~~~i~gFed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~~~G 177 (217)
..+.|.+.+...+|..||+.+++.+ .....+.-|.+.+|..++..+..||.+|+.+.++++||.-+++++..|++++|
T Consensus 137 ~al~l~~al~~GnY~kff~l~~~~p~~~~~~~~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~~~g 216 (229)
T 4b0z_A 137 WVISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAEERG 216 (229)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCGGGHHHHHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHcC
Confidence 9999999999999999999998864 23556778899999999999999999999999999998546789999999999
Q ss_pred ceEeCCceEEeC
Q psy5242 178 WKELDNGYIFIA 189 (217)
Q Consensus 178 Wt~~~~g~v~p~ 189 (217)
|+++++.++||.
T Consensus 217 w~i~dg~i~F~~ 228 (229)
T 4b0z_A 217 WDIRDGVIYFPK 228 (229)
T ss_dssp CEEETTEEECC-
T ss_pred CEEeCCEEecCC
Confidence 999755466663
No 4
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=98.61 E-value=4.7e-07 Score=80.67 Aligned_cols=159 Identities=13% Similarity=0.204 Sum_probs=119.3
Q ss_pred CCCchhHHHHHHHHHH------hc--cccchHhhH--------HHHHhhhcC-----CC-CChHHHHHHHHHHhhcCCCc
Q psy5242 22 NPEHLSTLEKYVEVQC------AE--NVYDLEANL--------AVLKLYQFH-----QN-YNMKITSQILLKALTNFPHT 79 (217)
Q Consensus 22 np~~l~~Le~yv~~Q~------~~--~~Yd~~aNl--------alLKLYqfn-----P~-~~~~vv~~ILlkaL~~~P~~ 79 (217)
|++.+.++|..+.--+ .+ ..||...|+ .|..+|.-. +. -..+..+.-||- ++-.+
T Consensus 54 ~~~~v~v~E~~aRf~i~~~~~L~~~~~~f~~~~~~eQl~~~L~sL~~lY~d~~~~~~~~~ne~EF~aY~lL~---~l~~~ 130 (316)
T 3t5v_A 54 GPEAVDCNERIVRIHLLILHIMVKSNVEFSLQQELEQLHKSLITLSEIYDDVRSSGGTCPNEAEFRAYALLS---KIRDP 130 (316)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH---STTCT
T ss_pred CchHHHHHHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH---Hhccc
Confidence 7888999999887642 22 367633222 234467641 22 334555554443 34467
Q ss_pred chhhhhhccCCCCCCCccHHHHHHHHHHHHh---------------CChHHHHHHhhcC-Cch--hhhccchHHHHHHHH
Q psy5242 80 DFILCKCLLSKDLCKEDPIDQIIYLADLLES---------------CKFTQFWSRMHTI-PDL--FLNIEGFNDSIRKFV 141 (217)
Q Consensus 80 DF~lc~~LIp~~~~~~~~i~~l~~L~~lLe~---------------c~F~~FW~~l~~~-~~l--~~~i~gFed~IR~~I 141 (217)
|+.--+-.+|+++..+|.|+....+...+.+ .+|..||..+++. .++ ...+..|.+.+|..+
T Consensus 131 ~~~~~l~~Lp~~i~~~p~Vq~AL~l~~a~~~~~~~e~~~~~~~~~~gNY~rFFrL~~~~~~pyL~aclle~~~~~vR~~A 210 (316)
T 3t5v_A 131 QYDENIQRLPKHIFQDKLVQMALCFRRVISNSAYTERGFVKTENCLNFYARFFQLMQSPSLPLLMGFFLQMHLTDIRFYA 210 (316)
T ss_dssp HHHHHHTTSCHHHHTSHHHHHHHHHHHHHCCTTCCCTTCCCCSSCCCCHHHHHHHHTCTTSCHHHHHHHGGGHHHHHHHH
T ss_pred hHHHHHHhCCHHHhcCHHHHHHHHHHHHHHhcccccccccccccccchHHHHHHHHhccCCChHHHHHHHHHHHHHHHHH
Confidence 8888888889999899999998998888753 6799999999872 233 355777889999999
Q ss_pred HHHHHHhc----ccccHHHHHHhhcCCCHHHHHHHHHHcCceEeCC
Q psy5242 142 CHVVGITF----QTIDKKLLSELLDGVEDSTLRLWVKKYGWKELDN 183 (217)
Q Consensus 142 ~~vVs~ty----qsIs~~~La~~LG~ls~~el~~~v~~~GWt~~~~ 183 (217)
+..++.|| .+++.+.|.++||.-+++++.+||+.+||++.++
T Consensus 211 L~~i~kay~~k~~~~pl~~L~~~L~Fds~ee~~~F~~~~gl~~~~~ 256 (316)
T 3t5v_A 211 LRALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFCNYYSIEIING 256 (316)
T ss_dssp HHHHHHHSCTTCCCEEHHHHHHHTTCSSHHHHHHHHHHTTCCEETT
T ss_pred HHHHHHHhccCCCCcCHHHHHHHhCCCCHHHHHHHHHHCCCeEeCC
Confidence 99999999 4899999999998556799999999999999754
No 5
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.00028 Score=64.39 Aligned_cols=129 Identities=15% Similarity=0.132 Sum_probs=89.2
Q ss_pred hHHHHHHHHHHhhcCCCcchhhhhhccCCC-----CCCCccHHHHHHHHHHHHhCChHHHHHHhhc--------CCchhh
Q psy5242 62 MKITSQILLKALTNFPHTDFILCKCLLSKD-----LCKEDPIDQIIYLADLLESCKFTQFWSRMHT--------IPDLFL 128 (217)
Q Consensus 62 ~~vv~~ILlkaL~~~P~~DF~lc~~LIp~~-----~~~~~~i~~l~~L~~lLe~c~F~~FW~~l~~--------~~~l~~ 128 (217)
.+++....|.|+..+|.+|+--- ++... ....|.+..+..+-..+..|+|..||..+.. .+-+.+
T Consensus 247 ~~~~~y~~l~al~~~~r~~l~~~--v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l~~ 324 (429)
T 4b4t_R 247 ESIATYASVTGLFTLERTDLKSK--VIDSPELLSLISTTAALQSISSLTISLYASDYASYFPYLLETYANVLIPCKYLNR 324 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHS--SSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTTSTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHH--HhcCHHHHhhccCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhccCHHHHH
Confidence 34555566667776766653211 11111 1234667788888889999999999987633 123445
Q ss_pred hccchHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHHH---cC---ceEe-CCceEEeCCCCc
Q psy5242 129 NIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKK---YG---WKEL-DNGYIFIANQDE 193 (217)
Q Consensus 129 ~i~gFed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~~---~G---Wt~~-~~g~v~p~n~en 193 (217)
.+..|.+.||......+...|++|+.+.|++.|| ++.+++++++.+ .| =++| .+|++....|++
T Consensus 325 h~~~l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~-~s~~~~E~~L~~lI~~g~l~akID~~~giv~~~~~d~ 395 (429)
T 4b4t_R 325 HADFFVREMRRKVYAQLLESYKTLSLKSMASAFG-VSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRPDN 395 (429)
T ss_dssp THHHHHHHHHHHHHHHHHHTCSEEEHHHHHHHHT-SCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECC---
T ss_pred HHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhC-cCHHHHHHHHHHHHHcCCeEEEEcCCCCEEEECCCCc
Confidence 5778899999999999999999999999999997 999999888774 22 2455 467666544443
No 6
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.93 E-value=0.0036 Score=57.07 Aligned_cols=126 Identities=10% Similarity=0.072 Sum_probs=94.1
Q ss_pred hHHHHHHHHHHhhcCCCcchhhhhhccCCC--CCCCccHHHHHHHHHHHHhCChHHHHHHhhcCCc-------hhhhccc
Q psy5242 62 MKITSQILLKALTNFPHTDFILCKCLLSKD--LCKEDPIDQIIYLADLLESCKFTQFWSRMHTIPD-------LFLNIEG 132 (217)
Q Consensus 62 ~~vv~~ILlkaL~~~P~~DF~lc~~LIp~~--~~~~~~i~~l~~L~~lLe~c~F~~FW~~l~~~~~-------l~~~i~g 132 (217)
.+++...+|.+|+.+.-+|+.--. ..+. ....|++..+..|.+....|++.+|=+.+..+.+ +...+..
T Consensus 220 ~~~lkYlvL~aLl~~~r~el~~~l--~~~~~~~~~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~ 297 (394)
T 3txn_A 220 LTSLKYMLLCKIMLGQSDDVNQLV--SGKLAITYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGT 297 (394)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHH--HSHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHh--ccccccccCCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 356777888888888877875311 1110 0157899999999999999999999888876421 2334567
Q ss_pred hHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHHH-------cCceEe-CCceEEeCCC
Q psy5242 133 FNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKK-------YGWKEL-DNGYIFIANQ 191 (217)
Q Consensus 133 Fed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~~-------~GWt~~-~~g~v~p~n~ 191 (217)
+.+.||.....-+...|++|+.+.+++.|| ++.+++++++.+ .| ++| .+|++....+
T Consensus 298 L~~~Ir~~~L~~i~~pYsrIsl~~iA~~l~-ls~~evE~~L~~lI~dg~I~a-~IDq~~giv~~~~~ 362 (394)
T 3txn_A 298 LYDTMLEQNLCRIIEPYSRVQVAHVAESIQ-LPMPQVEKKLSQMILDKKFSG-ILDQGEGVLIVFEE 362 (394)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEHHHHHHHHT-CCHHHHHHHHHHHHHTTSSCE-EEETTTTEEEECCC
T ss_pred HHHHHHHHHHHHHhHhhceeeHHHHHHHHC-cCHHHHHHHHHHHHHCCCeeE-EEcCCCCEEEECCC
Confidence 788999999999999999999999999997 899999999875 23 565 3566555433
No 7
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=95.95 E-value=0.0087 Score=43.06 Aligned_cols=44 Identities=9% Similarity=0.108 Sum_probs=38.9
Q ss_pred cchHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHHH
Q psy5242 131 EGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKK 175 (217)
Q Consensus 131 ~gFed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~~ 175 (217)
.-+.+.+.+.-.+.++..|++|+.+.|+++|| ++.+++++++.+
T Consensus 10 ~~L~~~v~E~nl~~is~~Y~~Isl~~La~ll~-ls~~~vE~~ls~ 53 (84)
T 1ufm_A 10 SILDRAVIEHNLLSASKLYNNITFEELGALLE-IPAAKAEKIASQ 53 (84)
T ss_dssp CCCCHHHHHHHHHHHHHSCSEEEHHHHHHHTT-SCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHC-cCHHHHHHHHHH
Confidence 45667788888888999999999999999997 999999999885
No 8
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.01 E-value=0.12 Score=44.45 Aligned_cols=81 Identities=9% Similarity=0.136 Sum_probs=65.6
Q ss_pred CCccHHHHHHHHHHHHhCChHHHHHHhhcC-------CchhhhccchHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCH
Q psy5242 94 KEDPIDQIIYLADLLESCKFTQFWSRMHTI-------PDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVED 166 (217)
Q Consensus 94 ~~~~i~~l~~L~~lLe~c~F~~FW~~l~~~-------~~l~~~i~gFed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~ 166 (217)
..+++.....+......+++..|=..+... +-+...+..+.+.+|......+...|++|+.+.+++.|| ++.
T Consensus 292 ~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~-~~~ 370 (434)
T 4b4t_Q 292 QSRGIDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIG-LDT 370 (434)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHT-CCH
T ss_pred cchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhC-cCH
Confidence 456778888888888888888776666543 223455677888899999999999999999999999997 899
Q ss_pred HHHHHHHHH
Q psy5242 167 STLRLWVKK 175 (217)
Q Consensus 167 ~el~~~v~~ 175 (217)
+++++++.+
T Consensus 371 ~~~E~~l~~ 379 (434)
T 4b4t_Q 371 QQVEGKLSQ 379 (434)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988875
No 9
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.41 E-value=0.2 Score=45.69 Aligned_cols=110 Identities=15% Similarity=0.137 Sum_probs=71.9
Q ss_pred HHHHHHHHHhhcCCCcchhhhhhccCCCCCCCccHHHHHHHHHHHHh---CChHHHHHHhhcC---Cch-------hhhc
Q psy5242 64 ITSQILLKALTNFPHTDFILCKCLLSKDLCKEDPIDQIIYLADLLES---CKFTQFWSRMHTI---PDL-------FLNI 130 (217)
Q Consensus 64 vv~~ILlkaL~~~P~~DF~lc~~LIp~~~~~~~~i~~l~~L~~lLe~---c~F~~FW~~l~~~---~~l-------~~~i 130 (217)
....+++.++++-+.+++.-.++-+-..- .-++++....|.....+ .+|+.+.+..... .++ ...+
T Consensus 260 ~L~~~v~~~iLa~~~~~~~~ll~~~~~~~-~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 338 (445)
T 4b4t_P 260 VLSHIVYFLVLSPYGNLQNDLIHKIQNDN-NLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHW 338 (445)
T ss_dssp HHHHHHHHHHHSSCSSTTHHHHHSHHHHS-SCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHH
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHhhcc-cccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHH
Confidence 34456666666555555554443222111 12345555555555544 4677777766542 111 2234
Q ss_pred cchHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHHH
Q psy5242 131 EGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKK 175 (217)
Q Consensus 131 ~gFed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~~ 175 (217)
..+.+++++.-+..++.-|++|+.+.|++.|| ++.+++++++.+
T Consensus 339 ~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~-l~~~evE~~ls~ 382 (445)
T 4b4t_P 339 EDLQKRVIEHNLRVISEYYSRITLLRLNELLD-LTESQTETYISD 382 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHT-SCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhceeeHHHHHHHhC-cCHHHHHHHHHH
Confidence 56788899999999999999999999999997 999999999875
No 10
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.62 E-value=7.1 Score=34.80 Aligned_cols=136 Identities=11% Similarity=0.110 Sum_probs=80.6
Q ss_pred ccccchHhhHHHHHhhhcCCC--CChH----HHHHHHHHHhhcCCCcchhhhhhcc-CCCCCCCccHHHHHHHHHHHHhC
Q psy5242 39 ENVYDLEANLAVLKLYQFHQN--YNMK----ITSQILLKALTNFPHTDFILCKCLL-SKDLCKEDPIDQIIYLADLLESC 111 (217)
Q Consensus 39 ~~~Yd~~aNlalLKLYqfnP~--~~~~----vv~~ILlkaL~~~P~~DF~lc~~LI-p~~~~~~~~i~~l~~L~~lLe~c 111 (217)
++.|+-...-++.-|..+.+. .+.+ ....+++.||+.=--..|.=-+..- =.+.+..|+...+..|=+....+
T Consensus 182 ~~~~a~~y~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~all~~~i~~f~eLL~~p~i~~L~~~~~~~~l~~Ll~~f~~g 261 (393)
T 4b4t_O 182 KNDFNSFYYTSLLYLSTLEPSTSITLAERQQLAYDLSISALLGDKIYNFGELLHHPIMETIVNDSNYDWLFQLLNALTVG 261 (393)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSSSCSHHHHHHHHHHHHHHHHHCCSSCSTHHHHHSCCTTSSCSSSSTTHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHcCCCCCChHHHhCChHHHHhhcCCchHHHHHHHHHHhcC
Confidence 345554444455545445443 4333 3445555666543235554333321 12234667888888899999999
Q ss_pred ChHHHHHHhhcCCchhhhccchHHHHHHHH--HHHHH----HhcccccHHHHHHhhcCCCHHHHHHHHHH
Q psy5242 112 KFTQFWSRMHTIPDLFLNIEGFNDSIRKFV--CHVVG----ITFQTIDKKLLSELLDGVEDSTLRLWVKK 175 (217)
Q Consensus 112 ~F~~FW~~l~~~~~l~~~i~gFed~IR~~I--~~vVs----~tyqsIs~~~La~~LG~ls~~el~~~v~~ 175 (217)
++.+|=+.++.+.+-.+......+.+++.+ ..++. ..|++|+-+.+++.|| ++.++++.++.+
T Consensus 262 ~~~~f~~~~~~~~~~~~~l~~~~~~l~~kirll~l~~l~~~~~~~~i~f~~ia~~l~-i~~~evE~lli~ 330 (393)
T 4b4t_O 262 DFDKFDSLIKVQISKIPILAQHESFLRQKICLMTLIETVFVKNIRMLSFEDISKATH-LPKDNVEHLVMR 330 (393)
T ss_dssp CHHHHHHHCCHHHHHSHHHHHHHHHHHHHHHHHHHHHHHCSSSCCCEEHHHHHHHHT-CCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhhhCcchhhhHHHHHHHHHHHHHHHHhccCCCCcCcHHHHHHHhC-cCHHHHHHHHHH
Confidence 999997665543222233333333333322 23333 3478899999999997 899999999885
No 11
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.34 E-value=1.3 Score=41.74 Aligned_cols=77 Identities=13% Similarity=0.213 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhCChHHHHHHhhcCC------chhhhccchHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCH-HHHH
Q psy5242 98 IDQIIYLADLLESCKFTQFWSRMHTIP------DLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVED-STLR 170 (217)
Q Consensus 98 i~~l~~L~~lLe~c~F~~FW~~l~~~~------~l~~~i~gFed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~-~el~ 170 (217)
+..=..|.+.....+...|=+.+..+. ....-|.....++.+.-++-|+.+|++||.++++.-|| +++ ++++
T Consensus 342 L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~-L~s~eeaE 420 (523)
T 4b4t_S 342 LLPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLN-LDSEQTVE 420 (523)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCTHHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHH-HHHSSCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcceeccCChhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhC-CCCHHHHH
Confidence 333456888889999999999987753 23345555667788888899999999999999999998 653 5566
Q ss_pred HHHHH
Q psy5242 171 LWVKK 175 (217)
Q Consensus 171 ~~v~~ 175 (217)
.++.+
T Consensus 421 ~iVAk 425 (523)
T 4b4t_S 421 YMVSR 425 (523)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66664
No 12
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=69.22 E-value=9 Score=25.35 Aligned_cols=43 Identities=14% Similarity=0.057 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHHH---cCc
Q psy5242 135 DSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKK---YGW 178 (217)
Q Consensus 135 d~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~~---~GW 178 (217)
+..|+.|+.++...=..++...|++.|| ++...+.+.++. .|+
T Consensus 9 ~~~~~~IL~~L~~~~~~~s~~eLA~~lg-lsr~tv~~~l~~L~~~G~ 54 (67)
T 2heo_A 9 DNLEQKILQVLSDDGGPVAIFQLVKKCQ-VPKKTLNQVLYRLKKEDR 54 (67)
T ss_dssp CHHHHHHHHHHHHHCSCEEHHHHHHHHC-SCHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHcCCCcCHHHHHHHHC-cCHHHHHHHHHHHHHCCc
Confidence 3478899999986445699999999997 999998888774 798
No 13
>1us7_B HSP90 CO-chaperone CDC37; chaperone CO-chaperone regulation, ATP-binding, H shock,; 2.3A {Homo sapiens} SCOP: a.205.1.1 PDB: 2k5b_B 2w0g_A
Probab=67.38 E-value=7.4 Score=33.49 Aligned_cols=128 Identities=13% Similarity=0.198 Sum_probs=82.6
Q ss_pred chHhhHHHHHhhhcCCC-CChHHHHHHHHHHhhcCCCcchhhhhhccCCCCCCCccHHHHHHHHHHHHh---CChHHHHH
Q psy5242 43 DLEANLAVLKLYQFHQN-YNMKITSQILLKALTNFPHTDFILCKCLLSKDLCKEDPIDQIIYLADLLES---CKFTQFWS 118 (217)
Q Consensus 43 d~~aNlalLKLYqfnP~-~~~~vv~~ILlkaL~~~P~~DF~lc~~LIp~~~~~~~~i~~l~~L~~lLe~---c~F~~FW~ 118 (217)
|.+.-.-.| +=+|+ +.....-.+|+.|+-.-=.-+-.+......+.+ -++.|..|+..|-. .=+..|++
T Consensus 54 ~y~dS~~FL---~~hp~Lv~E~tad~Lli~afdlemegk~~~m~qvaHQ~l----lLQYIlELak~L~~dpr~~v~~FF~ 126 (265)
T 1us7_B 54 RWDDSQKYL---SDNVHLVCEETANYLVIWCIDLEVEEKCALMEQVAHQTI----VMQFILELAKSLKVDPRACFRQFFT 126 (265)
T ss_dssp SHHHHHHHH---HTTGGGCSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHHHHHHHHHHHSSCGGGTHHHHHH
T ss_pred CHHHHHHHH---HhCCeecchhhhhHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHcCCChhhHHHHHHH
Confidence 444444444 55999 888888889999876322222222222222222 46788888888887 88999999
Q ss_pred HhhcC-----CchhhhccchHHHHHHHHHHHHH----------------------------------HhcccccHHHHHH
Q psy5242 119 RMHTI-----PDLFLNIEGFNDSIRKFVCHVVG----------------------------------ITFQTIDKKLLSE 159 (217)
Q Consensus 119 ~l~~~-----~~l~~~i~gFed~IR~~I~~vVs----------------------------------~tyqsIs~~~La~ 159 (217)
.+... .-+..++.+|.+.||.|.-..+. .||.+=+++.|..
T Consensus 127 ki~~~~~~~~~~F~ddV~~~~~RIk~Ra~~~~~e~~~e~ee~eeQ~rL~pgglDP~EVFeslP~emQ~afes~dld~lnk 206 (265)
T 1us7_B 127 KIKTADRQYMEGFNDELEAFKERVRGRAKLRIEKAMKEYEEEERKKRLGPGGLDPVEVYESLPEELQKCFDVKDVQMLQD 206 (265)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSCCHHHHHHHSCTTCCCC-------CHHH
T ss_pred HHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhccCCCCCCHHHHHhhCCHHHHHHHHcCCHHHHHH
Confidence 99752 23567888999999888764421 1356666788888
Q ss_pred hhcCCCHHHHHHHHHHcC
Q psy5242 160 LLDGVEDSTLRLWVKKYG 177 (217)
Q Consensus 160 ~LG~ls~~el~~~v~~~G 177 (217)
.||.|+.++++..++.++
T Consensus 207 vl~~M~veeAe~h~~r~i 224 (265)
T 1us7_B 207 AISKMDPTDAKYHMQRCI 224 (265)
T ss_dssp HHTCCSSSHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 899999999999988753
No 14
>2p9x_A Hypothetical protein PH0832; pyrococcus horikoshii OT3, NPPSFA, national project on prote structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=64.44 E-value=3.9 Score=29.84 Aligned_cols=38 Identities=11% Similarity=0.217 Sum_probs=31.0
Q ss_pred CchHHHHHHHHHHHhccccCCCCCchhHHHHHHHHHHhcc
Q psy5242 1 MTQAELMKGSVDQLLVGIERYNPEHLSTLEKYVEVQCAEN 40 (217)
Q Consensus 1 ~~~~~~~~~~i~~~l~g~~rYnp~~l~~Le~yv~~Q~~~~ 40 (217)
|+..+.+ .+..+...+.|.||--.++||.|+..|...|
T Consensus 1 ms~~~di--~~~t~~~alr~~~p~le~~LeahL~a~~n~g 38 (99)
T 2p9x_A 1 MSKGRDI--LTKTIILALREVAPGLEAVLEAHLRATLNSG 38 (99)
T ss_dssp -CHHHHH--HHHHHHHHHHHHCTTHHHHHHHHHHHHHSCC
T ss_pred CCcHHHH--HHHHHHHHHHHhCccHHHHHHHHHHHHhccc
Confidence 5555555 4677788889999999999999999998876
No 15
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=59.78 E-value=29 Score=26.88 Aligned_cols=56 Identities=18% Similarity=0.188 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhc-----------ccccHHHHHHhhcCCCHHHHHHHHH---HcCceEeCCceEEeCCCC
Q psy5242 136 SIRKFVCHVVGITF-----------QTIDKKLLSELLDGVEDSTLRLWVK---KYGWKELDNGYIFIANQD 192 (217)
Q Consensus 136 ~IR~~I~~vVs~ty-----------qsIs~~~La~~LG~ls~~el~~~v~---~~GWt~~~~g~v~p~n~e 192 (217)
+.+.++++.+-.-+ ..++...+|++|| ++.+.+-..++ +.||-.-+.+.+.+.+++
T Consensus 152 ~~~~Rl~~~L~~~~~~~~~~~~~~~~~~t~~~lA~~lg-~sr~tvsR~l~~l~~~g~I~~~~~~i~i~d~~ 221 (227)
T 3dkw_A 152 NATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAGHLS-IQPETFSRIMHRLGDEGIIHLDGREISILDRE 221 (227)
T ss_dssp HHHHHHHHHHHHHHCSSSSSCCCCCCCSCTHHHHHHTT-SCHHHHHHHHHHHHHHTSEEESSSCEEESCST
T ss_pred CHHHHHHHHHHHhhhhcCCCCeEEEecCCHHHHHHHhC-CCHHHHHHHHHHHHHCCcEEecCCEEEEeCHH
Confidence 45566666543322 3478899999998 89988777766 479955445556665554
No 16
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=56.33 E-value=25 Score=27.03 Aligned_cols=40 Identities=18% Similarity=0.269 Sum_probs=29.5
Q ss_pred cccHHHHHHhhcCCCHHHHHHHHH---HcCceEeCCceEEeCCC
Q psy5242 151 TIDKKLLSELLDGVEDSTLRLWVK---KYGWKELDNGYIFIANQ 191 (217)
Q Consensus 151 sIs~~~La~~LG~ls~~el~~~v~---~~GWt~~~~g~v~p~n~ 191 (217)
.++...+|++|| ++.+.+-..++ +.|+-.-+.+.+.+.++
T Consensus 169 ~~t~~~lA~~lg-~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d~ 211 (220)
T 3dv8_A 169 KITHETIANHLG-SHREVITRMLRYFQVEGLVKLSRGKITILDS 211 (220)
T ss_dssp CCCHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEEETTEEEESCH
T ss_pred cCCHHHHHHHhC-CCHHHHHHHHHHHHHCCCEEeCCCEEEEeCH
Confidence 789999999998 89988777766 47995444455555543
No 17
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=55.19 E-value=10 Score=23.74 Aligned_cols=27 Identities=7% Similarity=0.174 Sum_probs=22.1
Q ss_pred HHHHHHhhcCCCH-HHHHHHHHHcCceEe
Q psy5242 154 KKLLSELLDGVED-STLRLWVKKYGWKEL 181 (217)
Q Consensus 154 ~~~La~~LG~ls~-~el~~~v~~~GWt~~ 181 (217)
+..+.+..| .++ ++...++..++|-++
T Consensus 9 ia~F~~iTG-~~d~~~A~~~Lea~nWDLe 36 (45)
T 3e21_A 9 LADFQACTG-IENIDEAITLLEQNNWDLV 36 (45)
T ss_dssp HHHHHHHHC-CCCHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHcCCcHH
Confidence 456777887 776 899999999999775
No 18
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=53.58 E-value=18 Score=24.27 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHH---HcCceE
Q psy5242 138 RKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVK---KYGWKE 180 (217)
Q Consensus 138 R~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~---~~GWt~ 180 (217)
|+.|+..+... ..++...|++.+| ++...+...+. +.|+-.
T Consensus 2 r~~Il~~L~~~-~~~s~~eLa~~lg-vs~~tv~r~L~~L~~~GlI~ 45 (81)
T 2htj_A 2 KNEILEFLNRH-NGGKTAEIAEALA-VTDYQARYYLLLLEKAGMVQ 45 (81)
T ss_dssp HHHHHHHHHHS-CCCCHHHHHHHHT-SCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHC-cCHHHHHHHHHHHHHCCCEE
Confidence 66777777643 6799999999997 89988888776 479855
No 19
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=49.89 E-value=43 Score=25.86 Aligned_cols=41 Identities=12% Similarity=0.215 Sum_probs=29.6
Q ss_pred ccccHHHHHHhhcCCCHHHHHHHHH---HcCceEeC-CceEEeCCC
Q psy5242 150 QTIDKKLLSELLDGVEDSTLRLWVK---KYGWKELD-NGYIFIANQ 191 (217)
Q Consensus 150 qsIs~~~La~~LG~ls~~el~~~v~---~~GWt~~~-~g~v~p~n~ 191 (217)
..++...+|++|| ++.+.+-..++ +.||-.-. .+.+.+.++
T Consensus 166 ~~~t~~~lA~~lg-~sr~tvsR~l~~l~~~g~I~~~~~~~i~i~d~ 210 (220)
T 2fmy_A 166 LGLNTEEIALMLG-TTRQTVSVLLNDFKKMGILERVNQRTLLLKDL 210 (220)
T ss_dssp CSSCHHHHHHHHT-SCHHHHHHHHHHHHHTTSEEESSSSEEEESCH
T ss_pred ccCCHHHHHHHhC-CcHHHHHHHHHHHHHCCCEEEcCCCEEEEcCH
Confidence 3689999999998 89988777766 47995543 455555544
No 20
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=48.79 E-value=96 Score=24.79 Aligned_cols=75 Identities=7% Similarity=0.089 Sum_probs=48.9
Q ss_pred HHHHHHHHHhCChHHHHHHhhcCCchhh--hccchHHHHHHH----HHHHHHH--hcccccHHHHHHhhc-----CCCHH
Q psy5242 101 IIYLADLLESCKFTQFWSRMHTIPDLFL--NIEGFNDSIRKF----VCHVVGI--TFQTIDKKLLSELLD-----GVEDS 167 (217)
Q Consensus 101 l~~L~~lLe~c~F~~FW~~l~~~~~l~~--~i~gFed~IR~~----I~~vVs~--tyqsIs~~~La~~LG-----~ls~~ 167 (217)
-..|.+...+.+..+|=+.++.+++.+. .+--..+.+|.- .++-|.. .|++|+.+.++.-|+ +++.+
T Consensus 83 y~~L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~~~~~ 162 (203)
T 3t5x_A 83 FAEVTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVEDVDID 162 (203)
T ss_dssp GHHHHHHHHHTCHHHHHHHHHHTHHHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTTCCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHhHHHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCHH
Confidence 4577889999999999999987643211 111112333332 2222222 599999999999984 24788
Q ss_pred HHHHHHHH
Q psy5242 168 TLRLWVKK 175 (217)
Q Consensus 168 el~~~v~~ 175 (217)
|++-++.+
T Consensus 163 evE~ila~ 170 (203)
T 3t5x_A 163 EVQCILAN 170 (203)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888875
No 21
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=47.46 E-value=58 Score=24.68 Aligned_cols=39 Identities=10% Similarity=0.157 Sum_probs=28.3
Q ss_pred cccHHHHHHhhcCCCHHHHHHHHH---HcCceEeCCceEEeCC
Q psy5242 151 TIDKKLLSELLDGVEDSTLRLWVK---KYGWKELDNGYIFIAN 190 (217)
Q Consensus 151 sIs~~~La~~LG~ls~~el~~~v~---~~GWt~~~~g~v~p~n 190 (217)
.++...+|++|| ++.+.+-..++ +.||-.-+.+.+.+.+
T Consensus 167 ~~t~~~iA~~lg-~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d 208 (210)
T 3ryp_A 167 KITRQEIGQIVG-CSRETVGRILKMLEDQNLISAHGKTIVVYG 208 (210)
T ss_dssp ECCHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEEETTEEEEEC
T ss_pred ccCHHHHHHHhC-CcHHHHHHHHHHHHHCCcEEeCCCEEEEEe
Confidence 678999999998 89988777766 4798544444444443
No 22
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=45.87 E-value=64 Score=24.81 Aligned_cols=39 Identities=10% Similarity=0.129 Sum_probs=28.1
Q ss_pred cccHHHHHHhhcCCCHHHHHHHHH---HcCceEeCCceEEeCC
Q psy5242 151 TIDKKLLSELLDGVEDSTLRLWVK---KYGWKELDNGYIFIAN 190 (217)
Q Consensus 151 sIs~~~La~~LG~ls~~el~~~v~---~~GWt~~~~g~v~p~n 190 (217)
.++...+|++|| ++.+.+-..++ +.|+-.-+.+.+.+.+
T Consensus 187 ~lt~~~lA~~lg-~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d 228 (230)
T 3iwz_A 187 RVSRQELARLVG-CSREMAGRVLKKLQADGLLHARGKTVVLYG 228 (230)
T ss_dssp ECCHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEEETTEEEEEC
T ss_pred CCCHHHHHHHhC-CcHHHHHHHHHHHHHCCCEEECCCEEEEee
Confidence 478999999998 89988777766 4799443445444444
No 23
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=43.28 E-value=18 Score=24.91 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=39.3
Q ss_pred hccchHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHH---HcCceE
Q psy5242 129 NIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVK---KYGWKE 180 (217)
Q Consensus 129 ~i~gFed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~---~~GWt~ 180 (217)
....+.+..|..|+..+.. ...+...|++.|| ++...+...++ +.|+-.
T Consensus 16 ~~~~l~~~~r~~Il~~L~~--~~~~~~ela~~l~-is~~tvs~~L~~L~~~Glv~ 67 (98)
T 3jth_A 16 LLKAMANERRLQILCMLHN--QELSVGELCAKLQ-LSQSALSQHLAWLRRDGLVT 67 (98)
T ss_dssp HHHHHCSHHHHHHHHHTTT--SCEEHHHHHHHHT-CCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCHHHHHHHHHHhc--CCCCHHHHHHHHC-cCHHHHHHHHHHHHHCCCeE
Confidence 3344556789999999876 7899999999997 99988888877 478854
No 24
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=43.25 E-value=31 Score=24.10 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=37.9
Q ss_pred ccchHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHH---HcCceE
Q psy5242 130 IEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVK---KYGWKE 180 (217)
Q Consensus 130 i~gFed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~---~~GWt~ 180 (217)
...+.+..|..|+..+ .-..++...|++.+| ++...+...++ +.||-.
T Consensus 15 ~~~l~~~~r~~IL~~L--~~~~~~~~ela~~l~-is~~tv~~~l~~L~~~gli~ 65 (114)
T 2oqg_A 15 FAALSDETRWEILTEL--GRADQSASSLATRLP-VSRQAIAKHLNALQACGLVE 65 (114)
T ss_dssp HHHTTCHHHHHHHHHH--HHSCBCHHHHHHHSS-SCHHHHHHHHHHHHHTTSEE
T ss_pred HHHhCChHHHHHHHHH--HcCCCCHHHHHHHHC-cCHHHHHHHHHHHHHCCCee
Confidence 3444467888999988 456799999999997 99988888877 479954
No 25
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=42.92 E-value=31 Score=24.22 Aligned_cols=47 Identities=13% Similarity=0.139 Sum_probs=37.4
Q ss_pred cchHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHH---HcCceE
Q psy5242 131 EGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVK---KYGWKE 180 (217)
Q Consensus 131 ~gFed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~---~~GWt~ 180 (217)
..+.+..|..|+..+. -..++...|++.|| ++...+-..++ +.||-.
T Consensus 21 ~~l~~~~r~~IL~~L~--~~~~~~~ela~~l~-is~stvs~~L~~L~~~Glv~ 70 (106)
T 1r1u_A 21 KALGDYNRIRIMELLS--VSEASVGHISHQLN-LSQSNVSHQLKLLKSVHLVK 70 (106)
T ss_dssp HHTCSHHHHHHHHHHH--HCCBCHHHHHHHHT-CCHHHHHHHHHHHHHTTSEE
T ss_pred HHhCCHHHHHHHHHHH--hCCCCHHHHHHHHC-cCHHHHHHHHHHHHHCCCeE
Confidence 3445678999999887 46789999999997 89988887776 479854
No 26
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=42.24 E-value=59 Score=24.76 Aligned_cols=54 Identities=17% Similarity=0.127 Sum_probs=36.2
Q ss_pred HHHHHHHHHHH----h---cccccHHHHHHhhcCCCHHHHHHHHH---HcCceEeCCceEEeCCC
Q psy5242 137 IRKFVCHVVGI----T---FQTIDKKLLSELLDGVEDSTLRLWVK---KYGWKELDNGYIFIANQ 191 (217)
Q Consensus 137 IR~~I~~vVs~----t---yqsIs~~~La~~LG~ls~~el~~~v~---~~GWt~~~~g~v~p~n~ 191 (217)
.+.++++.+.. . -..++...+|++|| ++.+.+-..++ +.||-.-+.+.+.+.++
T Consensus 142 ~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg-~sr~tvsR~l~~l~~~g~I~~~~~~i~i~d~ 205 (216)
T 4ev0_A 142 ARNRVAYALLKLLRQGLGPLFQIRHHELAALAG-TSRETVSRVLHALAEEGVVRLGPGTVEVREA 205 (216)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEECCHHHHHHHHT-SCHHHHHHHHHHHHHTTSEEEETTEEEESCH
T ss_pred HHHHHHHHHHHHhhcCCccCCCCCHHHHHHHhC-CCHHHHHHHHHHHHHCCCEEecCCEEEEeCH
Confidence 45555555532 1 35689999999998 89988777766 47996544455555544
No 27
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=41.36 E-value=32 Score=23.60 Aligned_cols=47 Identities=11% Similarity=0.089 Sum_probs=37.4
Q ss_pred ccchHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHH---HcCceE
Q psy5242 130 IEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVK---KYGWKE 180 (217)
Q Consensus 130 i~gFed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~---~~GWt~ 180 (217)
...+.+..|..|+..+ -..++...|++.|| ++...+...++ +.|+-.
T Consensus 25 ~~~l~~~~r~~Il~~L---~~~~~~~eLa~~l~-is~~tv~~~L~~L~~~Glv~ 74 (96)
T 1y0u_A 25 NYAVTNPVRRKILRML---DKGRSEEEIMQTLS-LSKKQLDYHLKVLEAGFCIE 74 (96)
T ss_dssp HHHHSCHHHHHHHHHH---HTTCCHHHHHHHHT-CCHHHHHHHHHHHHHTTSEE
T ss_pred HHHhCCHHHHHHHHHH---cCCCCHHHHHHHHC-cCHHHHHHHHHHHHHCCCEE
Confidence 3445577899999988 36799999999997 99988888776 478854
No 28
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=41.26 E-value=66 Score=24.88 Aligned_cols=41 Identities=7% Similarity=0.002 Sum_probs=29.6
Q ss_pred ccccHHHHHHhhcCCCHHHHHHHHH---HcCceEeCCceEEeCCC
Q psy5242 150 QTIDKKLLSELLDGVEDSTLRLWVK---KYGWKELDNGYIFIANQ 191 (217)
Q Consensus 150 qsIs~~~La~~LG~ls~~el~~~v~---~~GWt~~~~g~v~p~n~ 191 (217)
..++...+|++|| ++.+.+-..++ +.||-.-+.+.+.+.++
T Consensus 174 ~~~t~~~iA~~lg-~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d~ 217 (231)
T 3e97_A 174 LPLGTQDIMARTS-SSRETVSRVLKRLEAHNILEVSPRSVTLLDL 217 (231)
T ss_dssp ECCCHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEECSSCEEESCH
T ss_pred cCCCHHHHHHHhC-CcHHHHHHHHHHHHHCCcEEecCCEEEEeCH
Confidence 3578999999998 89988777766 47985544455555443
No 29
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=40.92 E-value=69 Score=24.29 Aligned_cols=41 Identities=12% Similarity=0.115 Sum_probs=29.3
Q ss_pred ccccHHHHHHhhcCCCHHHHHHHHH---HcCceEeCCceEEeCCC
Q psy5242 150 QTIDKKLLSELLDGVEDSTLRLWVK---KYGWKELDNGYIFIANQ 191 (217)
Q Consensus 150 qsIs~~~La~~LG~ls~~el~~~v~---~~GWt~~~~g~v~p~n~ 191 (217)
..++...||++|| ++.+.+-..++ +.||-.-+.+.+.+.++
T Consensus 145 ~~~t~~~lA~~lg-~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d~ 188 (202)
T 2zcw_A 145 LKATHDELAAAVG-SVRETVTKVIGELAREGYIRSGYGKIQLLDL 188 (202)
T ss_dssp EECCHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEEETTEEEESCH
T ss_pred cCCCHHHHHHHhC-CCHHHHHHHHHHHHHCCCEEeCCCEEEEeCH
Confidence 3478999999998 89988776666 47995444455555554
No 30
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=40.53 E-value=61 Score=22.28 Aligned_cols=41 Identities=22% Similarity=0.356 Sum_probs=32.0
Q ss_pred HHHHHHHHHhcc--cccHHHHHHhhcCCCHHHHHHHHHHc-CceE
Q psy5242 139 KFVCHVVGITFQ--TIDKKLLSELLDGVEDSTLRLWVKKY-GWKE 180 (217)
Q Consensus 139 ~~I~~vVs~tyq--sIs~~~La~~LG~ls~~el~~~v~~~-GWt~ 180 (217)
+.|...|..-|. .++++.+++.+| +|...|....++. |=+.
T Consensus 5 ~~i~~~i~~~~~~~~~~~~~lA~~~~-~S~~~l~r~fk~~~g~s~ 48 (103)
T 3lsg_A 5 ELIQNIIEESYTDSQFTLSVLSEKLD-LSSGYLSIMFKKNFGIPF 48 (103)
T ss_dssp HHHHHHHHHHTTCTTCCHHHHHHHTT-CCHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHC-cCHHHHHHHHHHHHCcCH
Confidence 344455556664 699999999997 9999999999875 8665
No 31
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=39.94 E-value=76 Score=22.28 Aligned_cols=44 Identities=9% Similarity=0.061 Sum_probs=39.8
Q ss_pred cchHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHHH
Q psy5242 131 EGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKK 175 (217)
Q Consensus 131 ~gFed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~~ 175 (217)
||-.+...+.|+.++..+=+=++...+++.+| ++.+++.+.+.+
T Consensus 14 ~~~~~d~eekVLe~LkeaG~PlkageIae~~G-vdKKeVdKaik~ 57 (80)
T 2lnb_A 14 PGREGHLEQRILQVLTEAGSPVKLAQLVKECQ-APKRELNQVLYR 57 (80)
T ss_dssp SCHHHHHHHHHHHHHHHHTSCEEHHHHHHHHT-SCHHHHHHHHHH
T ss_pred CcccchHHHHHHHHHHHcCCCCCHHHHHHHHC-CCHHHHHHHHHH
Confidence 56677789999999999999999999999998 999999999875
No 32
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=39.93 E-value=25 Score=21.16 Aligned_cols=27 Identities=15% Similarity=0.409 Sum_probs=21.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHcCceEe
Q psy5242 154 KKLLSELLDGVEDSTLRLWVKKYGWKEL 181 (217)
Q Consensus 154 ~~~La~~LG~ls~~el~~~v~~~GWt~~ 181 (217)
+..+.+..| .+++....++..++|.++
T Consensus 9 i~~F~~iTg-~~~~~A~~~L~~~~wdle 35 (46)
T 1v92_A 9 LREFVAVTG-AEEDRARFFLESAGWDLQ 35 (46)
T ss_dssp HHHHHHHTC-CCHHHHHHHHHHTTSCSH
T ss_pred HHHHHHHhC-cCHHHHHHHHHHcCCCHH
Confidence 445567777 788899999999999874
No 33
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=39.84 E-value=6.5 Score=26.35 Aligned_cols=23 Identities=30% Similarity=0.658 Sum_probs=16.7
Q ss_pred HHhhcCCCHHHHHHHHHHcCceE
Q psy5242 158 SELLDGVEDSTLRLWVKKYGWKE 180 (217)
Q Consensus 158 a~~LG~ls~~el~~~v~~~GWt~ 180 (217)
+.+|--.+.+++.++|+++||-+
T Consensus 23 ~DLLksvds~eV~~YC~~kGwIi 45 (60)
T 1ng7_A 23 NDLLQAVDSQEVRDYCEKKGWIV 45 (60)
T ss_dssp HHHHHHHCCHHHHHHHHHHTCCC
T ss_pred HHHHHcCCCHHHHHHHHHCCcee
Confidence 34443234578999999999976
No 34
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=39.69 E-value=42 Score=24.30 Aligned_cols=50 Identities=10% Similarity=0.048 Sum_probs=39.5
Q ss_pred hccchHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHHH---cCceE
Q psy5242 129 NIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKK---YGWKE 180 (217)
Q Consensus 129 ~i~gFed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~~---~GWt~ 180 (217)
....+.+..|..|+..+.. ...++...|++.|| ++...+-..++. .||-.
T Consensus 35 ~~~al~~~~rl~IL~~L~~-~~~~s~~eLa~~l~-is~stvs~~L~~L~~~Glv~ 87 (122)
T 1u2w_A 35 ILKAIADENRAKITYALCQ-DEELCVCDIANILG-VTIANASHHLRTLYKQGVVN 87 (122)
T ss_dssp HHHHHHSHHHHHHHHHHHH-SSCEEHHHHHHHHT-CCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHhCCHHHHHHHHHHHH-CCCcCHHHHHHHHC-cCHHHHHHHHHHHHHCCCeE
Confidence 3445567789999998864 46789999999997 999888888774 79865
No 35
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=39.47 E-value=25 Score=25.35 Aligned_cols=52 Identities=15% Similarity=0.185 Sum_probs=41.7
Q ss_pred hhhhccchHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHH---HcCceE
Q psy5242 126 LFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVK---KYGWKE 180 (217)
Q Consensus 126 l~~~i~gFed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~---~~GWt~ 180 (217)
+......+.+..|..|+..+. -...+...|++.|| ++...+-..++ +.|+-.
T Consensus 8 ~~~~~~al~~~~R~~Il~~L~--~~~~~~~eLa~~l~-is~~tvs~hL~~L~~~GlV~ 62 (118)
T 3f6o_A 8 LNGIFQALADPTRRAVLGRLS--RGPATVSELAKPFD-MALPSFMKHIHFLEDSGWIR 62 (118)
T ss_dssp HHHHHHHHTSHHHHHHHHHHH--TCCEEHHHHHTTCC-SCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhCCHHHHHHHHHHH--hCCCCHHHHHHHhC-cCHHHHHHHHHHHHHCCCeE
Confidence 344455667889999999997 37889999999997 99988888777 479954
No 36
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=39.23 E-value=1.4e+02 Score=23.43 Aligned_cols=76 Identities=13% Similarity=0.140 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhCChHHHHHHhhcCCchhhhccchHHHHHHHHHHHHHHhcccccHHHHHHhhcCCC-HHHHHHHHH-H-
Q psy5242 99 DQIIYLADLLESCKFTQFWSRMHTIPDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVE-DSTLRLWVK-K- 175 (217)
Q Consensus 99 ~~l~~L~~lLe~c~F~~FW~~l~~~~~l~~~i~gFed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls-~~el~~~v~-~- 175 (217)
..+..|=++.-..++.+|=+.-.+.+.+. +.-...+|.-.+-.++..-+.|+-+.+++-|+ ++ .++++.|+- +
T Consensus 60 ~~~~~LL~iF~~G~~~~y~~~~~~~p~L~---~~~~~KlrlLtL~sLa~~~~~lsy~~I~~~l~-i~~~~evE~lvI~~a 135 (169)
T 3chm_A 60 SVYLDLLRLFAHGTWGDYKCNATRLPHLS---PDQILKLKQLTVLTLAESNKVLPYDTLMVELD-VSNVRELEDFLINEC 135 (169)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHGGGSCCCC---HHHHHHHHHHHHHHHHHHCSEEEHHHHHHHHT-CCSHHHHHHHHHHTH
T ss_pred hHHHHHHHHHhcCCHHHHHHhHHhCcchH---HHHHHHHHHHHHHHHHHhCCCcCHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 44555555555666666544322333322 23334444443334444578999999999997 77 899999988 5
Q ss_pred --cCc
Q psy5242 176 --YGW 178 (217)
Q Consensus 176 --~GW 178 (217)
.|.
T Consensus 136 i~~gL 140 (169)
T 3chm_A 136 MYAGI 140 (169)
T ss_dssp HHHTS
T ss_pred HHhCC
Confidence 466
No 37
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=38.87 E-value=90 Score=24.09 Aligned_cols=41 Identities=17% Similarity=0.058 Sum_probs=29.1
Q ss_pred ccccHHHHHHhhcCCCHHHHHHHHH---HcCceEeCCceEEeCCC
Q psy5242 150 QTIDKKLLSELLDGVEDSTLRLWVK---KYGWKELDNGYIFIANQ 191 (217)
Q Consensus 150 qsIs~~~La~~LG~ls~~el~~~v~---~~GWt~~~~g~v~p~n~ 191 (217)
..++...+|++|| ++.+.+-..++ +.|+-.-+.+.+.+.++
T Consensus 179 ~~~t~~~lA~~lg-~sr~tvsR~l~~l~~~g~I~~~~~~i~i~d~ 222 (232)
T 2gau_A 179 IYLSREELATLSN-MTVSNAIRTLSTFVSERMLALDGKRIKIIDC 222 (232)
T ss_dssp CCCCHHHHHHHTT-SCHHHHHHHHHHHHHTTSEEEETTEEEESCH
T ss_pred cccCHHHHHHHhC-CCHHHHHHHHHHHHHCCCEeeCCCEEEEeCH
Confidence 3689999999998 89988777766 47984433444555543
No 38
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=38.19 E-value=1.3e+02 Score=23.65 Aligned_cols=42 Identities=7% Similarity=0.075 Sum_probs=29.9
Q ss_pred ccccHHHHHHhhcCCCHHHHHHHHH---HcCceEeCCceEEeCCCC
Q psy5242 150 QTIDKKLLSELLDGVEDSTLRLWVK---KYGWKELDNGYIFIANQD 192 (217)
Q Consensus 150 qsIs~~~La~~LG~ls~~el~~~v~---~~GWt~~~~g~v~p~n~e 192 (217)
..++...||++|| ++.+.+-..++ +.|+-.-+.+.+.+.+++
T Consensus 192 ~~lt~~~lA~~lG-~sr~tvsR~l~~L~~~GlI~~~~~~i~I~d~~ 236 (243)
T 3la7_A 192 LKLSHQAIAEAIG-STRVTVTRLLGDLREKKMISIHKKKITVHKPV 236 (243)
T ss_dssp SCCCHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEEETTEEEECC--
T ss_pred ccCCHHHHHHHHC-CcHHHHHHHHHHHHHCCCEEEcCCEEEECCHH
Confidence 3678999999998 89988777766 479955445566666554
No 39
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=38.10 E-value=52 Score=21.05 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHHHcCc
Q psy5242 137 IRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGW 178 (217)
Q Consensus 137 IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~~~GW 178 (217)
=|..|.+++..+ . ++...+..|| ++...|-..++++|-
T Consensus 22 Er~~I~~aL~~~-g--n~~~aA~~LG-Isr~tL~rklkk~gi 59 (61)
T 1g2h_A 22 EAQVLKLFYAEY-P--STRKLAQRLG-VSHTAIANKLKQYGI 59 (61)
T ss_dssp HHHHHHHHHHHS-C--SHHHHHHHTT-SCTHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHh-C--CHHHHHHHhC-CCHHHHHHHHHHhCC
Confidence 367777888777 4 5668899998 999999999988773
No 40
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=37.94 E-value=42 Score=24.89 Aligned_cols=39 Identities=5% Similarity=-0.015 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHcCceEeCCceEEeCCCCccccccccccccccc
Q psy5242 164 VEDSTLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFE 207 (217)
Q Consensus 164 ls~~el~~~v~~~GWt~~~~g~v~p~n~en~~k~~~i~E~i~~~ 207 (217)
-+.+++.+|++++||... |... ++-..+.|...+++.++
T Consensus 67 ~skE~AiayAek~G~~y~----V~ep-~~~~~r~ksYadNF~~~ 105 (108)
T 2lju_A 67 TTRELAIAYAVAHKIDYT----VLQD-NPRTIVPKSYADNFTKP 105 (108)
T ss_dssp SSHHHHHHHHHHTTCEEE----EECS-SCCCCCCCCCCCCCCCC
T ss_pred CCHHHHHHHHHHcCCEEE----EecC-CcccCCcCchHHHCCcc
Confidence 477899999999999873 3322 23346777777776553
No 41
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=36.40 E-value=60 Score=24.59 Aligned_cols=40 Identities=5% Similarity=0.113 Sum_probs=28.9
Q ss_pred cccHHHHHHhhcCCCHHHHHHHHH---HcCceEeCCceEEeCCC
Q psy5242 151 TIDKKLLSELLDGVEDSTLRLWVK---KYGWKELDNGYIFIANQ 191 (217)
Q Consensus 151 sIs~~~La~~LG~ls~~el~~~v~---~~GWt~~~~g~v~p~n~ 191 (217)
.++...||++|| ++.+.+-..++ +.||-.-+.+.+.+.++
T Consensus 139 ~~t~~~lA~~lg-~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d~ 181 (195)
T 3b02_A 139 TVSHEEIADATA-SIRESVSKVLADLRREGLIATAYRRVYLLDL 181 (195)
T ss_dssp ECCHHHHHHTTT-SCHHHHHHHHHHHHHHTSEEEETTEEEECCH
T ss_pred cCCHHHHHHHhC-CCHHHHHHHHHHHHHCCCEEecCCEEEEeCH
Confidence 588999999998 89988777766 47995434455555554
No 42
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=36.14 E-value=39 Score=23.32 Aligned_cols=42 Identities=14% Similarity=0.234 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhc---ccccHHHHHHhhcCCCHHHHHHHHHHcCc
Q psy5242 137 IRKFVCHVVGITF---QTIDKKLLSELLDGVEDSTLRLWVKKYGW 178 (217)
Q Consensus 137 IR~~I~~vVs~ty---qsIs~~~La~~LG~ls~~el~~~v~~~GW 178 (217)
-|+.|+.+..... ..++.+.|++...+.|+.+++..|.+.+-
T Consensus 15 ~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~ 59 (86)
T 2krk_A 15 ARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGM 59 (86)
T ss_dssp HHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4777777776655 36888999999966999999999987543
No 43
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=36.13 E-value=76 Score=21.95 Aligned_cols=65 Identities=9% Similarity=0.158 Sum_probs=41.0
Q ss_pred cccccHHHHHHhhcCCCHHHHHHHHHH-cCceEeC---C-----ceEEeCCCCccccccccccccccchHHHHhh
Q psy5242 149 FQTIDKKLLSELLDGVEDSTLRLWVKK-YGWKELD---N-----GYIFIANQDENIKTKNITEKIEFENAATIMT 214 (217)
Q Consensus 149 yqsIs~~~La~~LG~ls~~el~~~v~~-~GWt~~~---~-----g~v~p~n~en~~k~~~i~E~i~~~~~~~~~~ 214 (217)
-..++++.|++.+| +|...|....++ .|=+..+ . ..-.-.+.+....-+.|.+.+.|.+.+...+
T Consensus 16 ~~~~~~~~lA~~~~-~s~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~~~~~~~si~~IA~~~Gf~~~s~F~r 89 (108)
T 3mn2_A 16 MRPITIEKLTALTG-ISSRGIFKAFQRSRGYSPMAFAKRVRLQHAHNLLSDGATPTTVTAAALSCGFSNLGHFAR 89 (108)
T ss_dssp TSCCCHHHHHHHHT-CCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHSSSSCCCHHHHHHHTTCCCHHHHHH
T ss_pred cCCCCHHHHHHHHC-CCHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhCCCCHHHHHH
Confidence 46799999999997 999999999987 4865420 0 0001122222234456777777776655544
No 44
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=35.84 E-value=29 Score=35.00 Aligned_cols=67 Identities=15% Similarity=0.174 Sum_probs=41.4
Q ss_pred CchhHHHHHHHHHHhccc--cchHhhHHHHHhhhcCCC-CC-hHHHHHHHHHHhhcCCCcchh-hhhhccCC
Q psy5242 24 EHLSTLEKYVEVQCAENV--YDLEANLAVLKLYQFHQN-YN-MKITSQILLKALTNFPHTDFI-LCKCLLSK 90 (217)
Q Consensus 24 ~~l~~Le~yv~~Q~~~~~--Yd~~aNlalLKLYqfnP~-~~-~~vv~~ILlkaL~~~P~~DF~-lc~~LIp~ 90 (217)
+.|..||+||++++.+.. --....+-++..-...|. -+ ...+.+++++-+..+|.||+. +|.|++--
T Consensus 172 erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy~k~~~~dy~~a~~~ai~L 243 (963)
T 4ady_A 172 YRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLMNMPNCDYLTLNKVVVNL 243 (963)
T ss_dssp TCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHc
Confidence 568999999998764221 011233333444334444 22 146888889999999999965 77777543
No 45
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=35.83 E-value=85 Score=24.47 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=28.9
Q ss_pred ccccHHHHHHhhcCCCHHHHHHHHH---HcCceEeCCceEEeCCC
Q psy5242 150 QTIDKKLLSELLDGVEDSTLRLWVK---KYGWKELDNGYIFIANQ 191 (217)
Q Consensus 150 qsIs~~~La~~LG~ls~~el~~~v~---~~GWt~~~~g~v~p~n~ 191 (217)
..++...||++|| ++.+.+-..++ +.|+-.-+.+.+.+.++
T Consensus 185 ~~~t~~~lA~~lG-~sr~tvsR~l~~l~~~glI~~~~~~i~I~d~ 228 (232)
T 1zyb_A 185 FKVKMDDLARCLD-DTRLNISKTLNELQDNGLIELHRKEILIPDA 228 (232)
T ss_dssp EECCHHHHHHHHT-SCHHHHHHHHHHHHHTTSCEEETTEEEESCG
T ss_pred ecCCHHHHHHHhC-CChhHHHHHHHHHHHCCCEEecCCEEEEeCh
Confidence 4589999999998 89987766665 57984433455555554
No 46
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=34.89 E-value=70 Score=25.09 Aligned_cols=40 Identities=10% Similarity=0.101 Sum_probs=28.1
Q ss_pred cccHHHHHHhhcCCCH-HHHHHHHH---HcCceEeCCceEEeCCC
Q psy5242 151 TIDKKLLSELLDGVED-STLRLWVK---KYGWKELDNGYIFIANQ 191 (217)
Q Consensus 151 sIs~~~La~~LG~ls~-~el~~~v~---~~GWt~~~~g~v~p~n~ 191 (217)
.++...||++|| ++. +.+-..++ +.||-.-..+.+.+.++
T Consensus 169 ~~t~~~lA~~lG-~sr~etvsR~l~~l~~~glI~~~~~~i~I~d~ 212 (238)
T 2bgc_A 169 NLTMQELGYSSG-IAHSSAVSRIISKLKQEKVIVYKNSCFYVQNL 212 (238)
T ss_dssp CCCHHHHHHHTT-CCCHHHHHHHHHHHHHTTSEEEETTEEEESCH
T ss_pred cCCHHHHHHHhC-CChHHHHHHHHHHHHHCCCEEecCCEEEEeCH
Confidence 688999999998 888 67766665 57994333445555554
No 47
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=34.75 E-value=34 Score=23.64 Aligned_cols=51 Identities=12% Similarity=0.089 Sum_probs=39.8
Q ss_pred hhhccchHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHHH---cCceE
Q psy5242 127 FLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKK---YGWKE 180 (217)
Q Consensus 127 ~~~i~gFed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~~---~GWt~ 180 (217)
......+.+..|..|+..+.. ...+...|++.+| ++...+-+.++. .||-.
T Consensus 14 ~~~~~~l~~~~r~~Il~~L~~--~~~~~~ela~~l~-is~~tvs~~L~~L~~~Glv~ 67 (102)
T 3pqk_A 14 ANLLKTLSHPVRLMLVCTLVE--GEFSVGELEQQIG-IGQPTLSQQLGVLRESGIVE 67 (102)
T ss_dssp HHHHHHHCSHHHHHHHHHHHT--CCBCHHHHHHHHT-CCTTHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCHHHHHHHHHHHh--CCCCHHHHHHHHC-cCHHHHHHHHHHHHHCCCeE
Confidence 334455567899999999854 6799999999997 899888887774 79854
No 48
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=34.58 E-value=68 Score=21.43 Aligned_cols=48 Identities=10% Similarity=0.129 Sum_probs=38.4
Q ss_pred cchHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHH---HcCceE
Q psy5242 131 EGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVK---KYGWKE 180 (217)
Q Consensus 131 ~gFed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~---~~GWt~ 180 (217)
..+.+..|..|+..+.. ...++...+++.+| ++...+-..++ +.||-.
T Consensus 11 ~~l~~~~~~~iL~~L~~-~~~~~~~ela~~l~-is~~tvs~~l~~L~~~gli~ 61 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLP-RRKAPFSQIQKVLD-LTPGNLDSHIRVLERNGLVK 61 (100)
T ss_dssp HHHHSHHHHHHHHHHHH-HSEEEHHHHHHHTT-CCHHHHHHHHHHHHHTTSEE
T ss_pred cccCChHHHHHHHHHHh-cCCcCHHHHHHHHC-cCHHHHHHHHHHHHHCCCEE
Confidence 45667789999988863 46799999999997 99988887776 479964
No 49
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=34.35 E-value=39 Score=22.77 Aligned_cols=47 Identities=9% Similarity=0.082 Sum_probs=36.4
Q ss_pred chHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHH---HcCceE
Q psy5242 132 GFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVK---KYGWKE 180 (217)
Q Consensus 132 gFed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~---~~GWt~ 180 (217)
.+.+..|..|+..+.. -..++...|++.|| ++...+...++ +.||-.
T Consensus 20 ~l~~~~~~~il~~l~~-~~~~s~~ela~~l~-is~~tvs~~l~~L~~~glv~ 69 (99)
T 3cuo_A 20 AMSHPKRLLILCMLSG-SPGTSAGELTRITG-LSASATSQHLARMRDEGLID 69 (99)
T ss_dssp HHCSHHHHHHHHHHTT-CCSEEHHHHHHHHC-CCHHHHHHHHHHHHHTTSEE
T ss_pred HhCChHHHHHHHHHHh-CCCcCHHHHHHHHC-cCHHHHHHHHHHHHHCCCEE
Confidence 3345678888888854 44799999999997 89988888777 479854
No 50
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=34.28 E-value=22 Score=23.24 Aligned_cols=20 Identities=30% Similarity=0.268 Sum_probs=16.6
Q ss_pred HHHhc-cccchHhhHHHHHhh
Q psy5242 35 VQCAE-NVYDLEANLAVLKLY 54 (217)
Q Consensus 35 ~Q~~~-~~Yd~~aNlalLKLY 54 (217)
+|+.+ |+||-+.|..+||-+
T Consensus 14 ~~L~eMGF~D~~~N~~aL~~~ 34 (54)
T 2cp8_A 14 AHLFEMGFCDRQLNLRLLKKH 34 (54)
T ss_dssp HHHHHHTCCCHHHHHHHHTTT
T ss_pred HHHHHcCCCcHHHHHHHHHHc
Confidence 36666 999999999999743
No 51
>3dwl_G Actin-related protein 2/3 complex subunit 5; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=34.11 E-value=70 Score=25.09 Aligned_cols=69 Identities=6% Similarity=-0.017 Sum_probs=54.3
Q ss_pred HHHHHHHHhCChHHHHHHhhcCCchhhhccchHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHH
Q psy5242 102 IYLADLLESCKFTQFWSRMHTIPDLFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVK 174 (217)
Q Consensus 102 ~~L~~lLe~c~F~~FW~~l~~~~~l~~~i~gFed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~ 174 (217)
..+.++|.+.++.+-=+.+-+++.+-... +.++...+.+|-...++|..+.+..++..|+.++..-.++
T Consensus 41 ~qvr~lL~~g~~~~ALk~aL~~pP~~~~~----~~~K~~~~~~Vl~vL~siK~sdI~~~v~~L~~~~~D~LMK 109 (152)
T 3dwl_G 41 PQARSAIQTGNALQGLKTLLSYVPYGNDV----QEVRTQYLNAFVDVLSNIRAADIPAFVKECSTEEIDNIVN 109 (152)
T ss_dssp HHHHHHHHHSCCHHHHHHHTSSCCCSCSC----HHHHHHHHHHHHHHHHTSCGGGHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCCCCCh----HHHHHHHHHHHHHHHHHccHHHHHHHHHHhCHHHHHHHHH
Confidence 56778899999998777666667665443 6788888888888999999999999997788877665554
No 52
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=33.74 E-value=1.3e+02 Score=23.62 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=29.5
Q ss_pred ccccHHHHHHhhcCCCHHHHHHHHH---HcCceEeCCceEEeCCC
Q psy5242 150 QTIDKKLLSELLDGVEDSTLRLWVK---KYGWKELDNGYIFIANQ 191 (217)
Q Consensus 150 qsIs~~~La~~LG~ls~~el~~~v~---~~GWt~~~~g~v~p~n~ 191 (217)
..++...+|++|| ++.+.+-..++ +.||-.-..+.+.+.++
T Consensus 176 ~~~t~~~iA~~lG-~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d~ 219 (250)
T 3e6c_C 176 MPLSQKSIGEITG-VHHVTVSRVLASLKRENILDKKKNKIIVYNL 219 (250)
T ss_dssp CCCCHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEECSSEEEESCH
T ss_pred CCCCHHHHHHHhC-CcHHHHHHHHHHHHHCCCeEeCCCEEEEecH
Confidence 3679999999998 89988777766 47996544454444443
No 53
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=33.67 E-value=92 Score=19.80 Aligned_cols=40 Identities=15% Similarity=0.049 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHHHcCceE
Q psy5242 138 RKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWKE 180 (217)
Q Consensus 138 R~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~~~GWt~ 180 (217)
|.+|.+++..+-.+ +...+..|| ++-..|-..++++|...
T Consensus 21 ~~~i~~aL~~~~gn--~~~aA~~LG-isr~tL~rklkk~gi~~ 60 (63)
T 3e7l_A 21 KIFIEEKLREYDYD--LKRTAEEIG-IDLSNLYRKIKSLNIRV 60 (63)
T ss_dssp HHHHHHHHHHTTTC--HHHHHHHHT-CCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHhCCC--HHHHHHHHC-cCHHHHHHHHHHhCCCC
Confidence 45566666555444 567899998 99999999999998754
No 54
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=33.20 E-value=20 Score=25.56 Aligned_cols=49 Identities=8% Similarity=0.006 Sum_probs=37.8
Q ss_pred hccchHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHH---HcCceE
Q psy5242 129 NIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVK---KYGWKE 180 (217)
Q Consensus 129 ~i~gFed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~---~~GWt~ 180 (217)
....+.+..|..|+..+.. ..++...|++.|| ++...+...++ +.|+-.
T Consensus 18 ~~~al~~~~r~~IL~~L~~--~~~s~~eLa~~lg-is~stvs~~L~~L~~~GlV~ 69 (108)
T 2kko_A 18 VGKALANGRRLQILDLLAQ--GERAVEAIATATG-MNLTTASANLQALKSGGLVE 69 (108)
T ss_dssp HHHHHTTSTTHHHHHHHTT--CCEEHHHHHHHHT-CCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHhCCHHHHHHHHHHHc--CCcCHHHHHHHHC-cCHHHHHHHHHHHHHCCCeE
Confidence 3344456678888888863 7889999999997 99988888877 479854
No 55
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=33.16 E-value=71 Score=21.07 Aligned_cols=41 Identities=15% Similarity=0.241 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhcc---cccHHHHHHhhcCCCHHHHHHHHHHcC
Q psy5242 137 IRKFVCHVVGITFQ---TIDKKLLSELLDGVEDSTLRLWVKKYG 177 (217)
Q Consensus 137 IR~~I~~vVs~tyq---sIs~~~La~~LG~ls~~el~~~v~~~G 177 (217)
-|..|++.....+. .++.+.|++..-+.|+.+++..|.+.+
T Consensus 7 ~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~ 50 (78)
T 3kw6_A 7 ARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAG 50 (78)
T ss_dssp HHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 46677776666553 678888998886699999999998754
No 56
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=33.14 E-value=67 Score=21.53 Aligned_cols=32 Identities=16% Similarity=0.343 Sum_probs=26.1
Q ss_pred cccHHHHHHhhcCCCHHHHHHHHHH---cCceEeCC
Q psy5242 151 TIDKKLLSELLDGVEDSTLRLWVKK---YGWKELDN 183 (217)
Q Consensus 151 sIs~~~La~~LG~ls~~el~~~v~~---~GWt~~~~ 183 (217)
.++++..++||| ++...+.+++.+ .+|.+..+
T Consensus 16 ~LTi~EaAeylg-Ig~~~l~~L~~~~~~~~~~~~iG 50 (70)
T 1y6u_A 16 TLTIEEASKYFR-IGENKLRRLAEENKNANWLIMNG 50 (70)
T ss_dssp EEEHHHHHHHTC-SCHHHHHHHHHHCTTCSSEEEET
T ss_pred eeCHHHHHHHHC-cCHHHHHHHHHcCCCCCcEEEeC
Confidence 457888999997 999999999987 47877433
No 57
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=32.43 E-value=70 Score=22.16 Aligned_cols=72 Identities=10% Similarity=0.240 Sum_probs=44.9
Q ss_pred HHHHHHHHhc--ccccHHHHHHhhcCCCHHHHHHHHHH-cCceEeC--------CceEEeCCCCccccccccccccccch
Q psy5242 140 FVCHVVGITF--QTIDKKLLSELLDGVEDSTLRLWVKK-YGWKELD--------NGYIFIANQDENIKTKNITEKIEFEN 208 (217)
Q Consensus 140 ~I~~vVs~ty--qsIs~~~La~~LG~ls~~el~~~v~~-~GWt~~~--------~g~v~p~n~en~~k~~~i~E~i~~~~ 208 (217)
.++..|..-+ ..++++.+++.+| +|...+....++ .|-+..+ ...-...+++ ..-+.|.+.+.|.+
T Consensus 7 ~~~~~i~~~~~~~~~~~~~lA~~~~-~S~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~~~~--~si~~IA~~~Gf~~ 83 (107)
T 2k9s_A 7 EACQYISDHLADSNFDIASVAQHVC-LSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTR--MPIATVGRNVGFDD 83 (107)
T ss_dssp HHHHHHHHTSSCSSCCHHHHHHHTT-SCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHTTCCC
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHC-CCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHcCC--CCHHHHHHHhCCCC
Confidence 3455566666 4899999999997 999999999987 4876521 0000011222 23345667777776
Q ss_pred HHHHhh
Q psy5242 209 AATIMT 214 (217)
Q Consensus 209 ~~~~~~ 214 (217)
.+...+
T Consensus 84 ~s~F~r 89 (107)
T 2k9s_A 84 QLYFSR 89 (107)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655544
No 58
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=31.88 E-value=47 Score=24.23 Aligned_cols=46 Identities=11% Similarity=0.086 Sum_probs=36.2
Q ss_pred chHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHH---HcCceE
Q psy5242 132 GFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVK---KYGWKE 180 (217)
Q Consensus 132 gFed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~---~~GWt~ 180 (217)
.+-+..|..|+..+.. ...+...+++.|| ++...+-+.++ +.||-.
T Consensus 42 aL~~~~rl~IL~~L~~--~~~s~~ela~~lg-is~stvs~~L~~Le~~Glv~ 90 (122)
T 1r1t_A 42 VLADPNRLRLLSLLAR--SELCVGDLAQAIG-VSESAVSHQLRSLRNLRLVS 90 (122)
T ss_dssp HHCCHHHHHHHHHHTT--CCBCHHHHHHHHT-CCHHHHHHHHHHHHHTTSEE
T ss_pred HhCCHHHHHHHHHHHc--CCCCHHHHHHHHC-cCHHHHHHHHHHHHHCCCeE
Confidence 3445678889888863 5789999999997 99988888776 479965
No 59
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=31.40 E-value=70 Score=24.12 Aligned_cols=38 Identities=8% Similarity=0.191 Sum_probs=27.1
Q ss_pred cccHHHHHHhhcCCCHHHHHHHHH---HcCceEeCCceEEeC
Q psy5242 151 TIDKKLLSELLDGVEDSTLRLWVK---KYGWKELDNGYIFIA 189 (217)
Q Consensus 151 sIs~~~La~~LG~ls~~el~~~v~---~~GWt~~~~g~v~p~ 189 (217)
.++...||++|| ++.+.+-..++ +.||-.-..+.+.+.
T Consensus 164 ~~t~~~lA~~lg-~sr~tvsR~l~~l~~~g~I~~~~~~i~i~ 204 (207)
T 2oz6_A 164 KITRQEIGRIVG-CSREMVGRVLKSLEEQGLVHVKGKTMVVF 204 (207)
T ss_dssp ECCHHHHHHHHT-SCHHHHHHHHHHHHHTTSEEEETTEEEEE
T ss_pred ccCHHHHHHHhC-CCHHHHHHHHHHHHHCCCEEecCCEEEEE
Confidence 589999999998 89988776665 579943333444443
No 60
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=31.02 E-value=1.2e+02 Score=26.02 Aligned_cols=56 Identities=14% Similarity=0.135 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHh-cccccHHHHHHhhcCCCHHHHHHHHH---HcCceEe---CCceEEeCCCC
Q psy5242 136 SIRKFVCHVVGIT-FQTIDKKLLSELLDGVEDSTLRLWVK---KYGWKEL---DNGYIFIANQD 192 (217)
Q Consensus 136 ~IR~~I~~vVs~t-yqsIs~~~La~~LG~ls~~el~~~v~---~~GWt~~---~~g~v~p~n~e 192 (217)
..|+.|++++..+ -+.+|-+.|++-|| +|...+.+.++ +.|..++ +.|......+|
T Consensus 3 ~~~~~iL~~L~~~~g~~~Sg~eLa~~lg-vSr~aV~k~i~~L~~~G~~i~~~~~~GY~L~~~~~ 65 (323)
T 3rkx_A 3 KYSQDVLQLLYKNKPNYISGQSIAESLN-ISRTAVKKVIDQLKLEGCKIDSVNHKGHLLQQLPD 65 (323)
T ss_dssp CHHHHHHHHHHHHTTSCBCHHHHHHHHT-SCHHHHHHHHHHHHHTTCEEEEETTTEEEEEECCS
T ss_pred hHHHHHHHHHHhCCCCccCHHHHHHHHC-CCHHHHHHHHHHHHhcCCeEEEeCCCeEEEecCcc
Confidence 4688899998754 45799999999997 99999988887 4799775 34555554443
No 61
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=30.93 E-value=64 Score=25.60 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=39.4
Q ss_pred hccchHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHH---HcCceE
Q psy5242 129 NIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVK---KYGWKE 180 (217)
Q Consensus 129 ~i~gFed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~---~~GWt~ 180 (217)
....+.+..|..|+..+.. ..++...|++.+| ++...+...++ +.|+-.
T Consensus 13 ~~k~l~d~~~~~IL~~L~~--~~~s~~eLA~~lg-lS~stv~~~l~~Le~~GlI~ 64 (192)
T 1uly_A 13 VIKVMLEDTRRKILKLLRN--KEMTISQLSEILG-KTPQTIYHHIEKLKEAGLVE 64 (192)
T ss_dssp HHHHHHSHHHHHHHHHHTT--CCBCHHHHHHHHT-CCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHhCCHHHHHHHHHHHc--CCCCHHHHHHHHC-cCHHHHHHHHHHHHHCCCEE
Confidence 3445567899999999973 7899999999997 99988887776 478843
No 62
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=30.89 E-value=23 Score=23.10 Aligned_cols=23 Identities=22% Similarity=0.556 Sum_probs=20.2
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHH
Q psy5242 152 IDKKLLSELLDGVEDSTLRLWVKK 175 (217)
Q Consensus 152 Is~~~La~~LG~ls~~el~~~v~~ 175 (217)
++...++++|| +|...+..|+.+
T Consensus 3 lt~~e~a~~Lg-vS~~Tl~rw~~~ 25 (68)
T 1j9i_A 3 VNKKQLADIFG-ASIRTIQNWQEQ 25 (68)
T ss_dssp EEHHHHHHHTT-CCHHHHHHHTTT
T ss_pred cCHHHHHHHHC-cCHHHHHHHHHC
Confidence 56788999997 999999999865
No 63
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=30.30 E-value=40 Score=24.94 Aligned_cols=40 Identities=10% Similarity=0.219 Sum_probs=17.6
Q ss_pred CCHHHHHHHHHHcCceEeCCceEEeCCCCccccccccccccccch
Q psy5242 164 VEDSTLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFEN 208 (217)
Q Consensus 164 ls~~el~~~v~~~GWt~~~~g~v~p~n~en~~k~~~i~E~i~~~~ 208 (217)
-+.+++.+|++++||... |. ..++-..+.|...+++.++.
T Consensus 59 ~skE~AiayAek~G~~y~----V~-ep~~~~~r~ksYadNF~~~r 98 (106)
T 2jya_A 59 ETQEQAEAYAQRKGIEYR----VI-LPKEATRKVVSYTDNFRFNR 98 (106)
T ss_dssp SSHHHHHHHHHHHTCEEE----EC-CCTTC---------------
T ss_pred CCHHHHHHHHHHcCCEEE----Ee-CCCcCcCCcCchHHhCCcCC
Confidence 477899999999999873 22 22334567777777776654
No 64
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=30.29 E-value=1.6e+02 Score=23.46 Aligned_cols=39 Identities=10% Similarity=0.157 Sum_probs=28.1
Q ss_pred cccHHHHHHhhcCCCHHHHHHHHH---HcCceEeCCceEEeCC
Q psy5242 151 TIDKKLLSELLDGVEDSTLRLWVK---KYGWKELDNGYIFIAN 190 (217)
Q Consensus 151 sIs~~~La~~LG~ls~~el~~~v~---~~GWt~~~~g~v~p~n 190 (217)
.++...+|++|| ++.+.+-..++ +.||-.-+.+.+.+.+
T Consensus 217 ~lt~~~lA~~lG-~sr~tvsR~l~~L~~~GlI~~~~~~i~I~d 258 (260)
T 3kcc_A 217 KITRQEIGQIVG-CSRETVGRILKMLEDQNLISAHGKTIVVYG 258 (260)
T ss_dssp ECCHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEECSSEEEEC-
T ss_pred cCCHHHHHHHhC-CCHHHHHHHHHHHHHCCCEEEcCCEEEEEe
Confidence 678999999998 89988777766 4798554445554443
No 65
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=30.27 E-value=69 Score=22.46 Aligned_cols=70 Identities=10% Similarity=0.119 Sum_probs=42.9
Q ss_pred HHHHHHh-cccccHHHHHHhhcCCCHHHHHHHHHHc-CceEeCC--------ceEEeCCCCccccccccccccccchHHH
Q psy5242 142 CHVVGIT-FQTIDKKLLSELLDGVEDSTLRLWVKKY-GWKELDN--------GYIFIANQDENIKTKNITEKIEFENAAT 211 (217)
Q Consensus 142 ~~vVs~t-yqsIs~~~La~~LG~ls~~el~~~v~~~-GWt~~~~--------g~v~p~n~en~~k~~~i~E~i~~~~~~~ 211 (217)
...|..- -..++++.|++.+| +|...|....++. |-+..+= ..-.-.+++ ..-+.|.+.+.|.+.+.
T Consensus 13 ~~~i~~~~~~~~~~~~lA~~~~-~S~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~~~~--~~i~eIA~~~Gf~~~s~ 89 (113)
T 3oio_A 13 VSLMEANIEEPLSTDDIAYYVG-VSRRQLERLFKQYLGTVPSKYYLELRLNRARQLLQQTS--KSIVQIGLACGFSSGPH 89 (113)
T ss_dssp HHHHHTCSSSCCCHHHHHHHHT-SCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHTTCSCHHH
T ss_pred HHHHHhhhcCCCCHHHHHHHHC-cCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHcCC--CCHHHHHHHHCCCCHHH
Confidence 3344444 35699999999997 9999999999974 8765210 000011222 23345677777776655
Q ss_pred Hhh
Q psy5242 212 IMT 214 (217)
Q Consensus 212 ~~~ 214 (217)
..+
T Consensus 90 F~r 92 (113)
T 3oio_A 90 FSS 92 (113)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 66
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=29.70 E-value=41 Score=25.72 Aligned_cols=52 Identities=10% Similarity=0.121 Sum_probs=42.2
Q ss_pred hhhhccchHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHH---HcCceE
Q psy5242 126 LFLNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVK---KYGWKE 180 (217)
Q Consensus 126 l~~~i~gFed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~---~~GWt~ 180 (217)
+......+.+..|..|+..+. -...+...|++.|| ++...+-..++ +.||-.
T Consensus 48 ~~~~l~aL~~p~R~~IL~~L~--~~~~t~~eLa~~lg-ls~stvs~hL~~L~~aGlV~ 102 (151)
T 3f6v_A 48 VLDQLEVAAEPTRRRLVQLLT--SGEQTVNNLAAHFP-ASRSAISQHLRVLTEAGLVT 102 (151)
T ss_dssp CCCHHHHHTSHHHHHHHHHGG--GCCEEHHHHHTTSS-SCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhCCHHHHHHHHHHH--hCCCCHHHHHHHHC-cCHHHHHHHHHHHHHCCCEE
Confidence 334556677889999999997 57899999999997 99988888777 479954
No 67
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=29.49 E-value=97 Score=21.44 Aligned_cols=62 Identities=15% Similarity=0.072 Sum_probs=39.4
Q ss_pred ccccHHHHHHhhcCCCHHHHHHHHHHc-CceEeC---C-----ceEEeCCCCccccccccccccccchHHHHhh
Q psy5242 150 QTIDKKLLSELLDGVEDSTLRLWVKKY-GWKELD---N-----GYIFIANQDENIKTKNITEKIEFENAATIMT 214 (217)
Q Consensus 150 qsIs~~~La~~LG~ls~~el~~~v~~~-GWt~~~---~-----g~v~p~n~en~~k~~~i~E~i~~~~~~~~~~ 214 (217)
..++++.+++.+| +|...|....++. |-+..+ . ..-.-.+++ ..-+.|.+...|.+.+...+
T Consensus 20 ~~~~~~~lA~~~~-~S~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~~~~--~si~~IA~~~Gf~~~s~F~r 90 (108)
T 3oou_A 20 EGMSLKTLGNDFH-INAVYLGQLFQKEMGEHFTDYLNRYRVNYAKEELLQTK--DNLTIIAGKSGYTDMAYFYR 90 (108)
T ss_dssp SCCCHHHHHHHHT-SCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHTTCCCHHHHHH
T ss_pred CCCCHHHHHHHHC-cCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHcCC--CCHHHHHHHcCCCChHHHHH
Confidence 4799999999997 9999999999875 876521 0 000011222 22345777777776655443
No 68
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=29.38 E-value=1.2e+02 Score=21.83 Aligned_cols=32 Identities=9% Similarity=0.136 Sum_probs=28.1
Q ss_pred cccccHHHHHHhhcCCCHH---HHHHHHHHcCceEe
Q psy5242 149 FQTIDKKLLSELLDGVEDS---TLRLWVKKYGWKEL 181 (217)
Q Consensus 149 yqsIs~~~La~~LG~ls~~---el~~~v~~~GWt~~ 181 (217)
-..|+.+.+.+.|| +|-+ .+-++.-+.|||.-
T Consensus 78 ~~~it~ae~Rd~lg-~sRK~ai~lLE~~Dr~g~TrR 112 (121)
T 2pjp_A 78 CGSTCAADFRDRLG-VGRKLAIQILEYFDRIGFTRR 112 (121)
T ss_dssp HSSEEHHHHHHHHT-SCHHHHHHHHHHHHHHTSEEE
T ss_pred CCCccHHHHHHHHC-CcHHHHHHHHHHHhhcCCeEe
Confidence 48899999999998 8998 77777888999984
No 69
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=29.30 E-value=65 Score=21.51 Aligned_cols=43 Identities=7% Similarity=0.173 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhc---ccccHHHHHHhhcCCCHHHHHHHHHHcCc
Q psy5242 136 SIRKFVCHVVGITF---QTIDKKLLSELLDGVEDSTLRLWVKKYGW 178 (217)
Q Consensus 136 ~IR~~I~~vVs~ty---qsIs~~~La~~LG~ls~~el~~~v~~~GW 178 (217)
.-|+.|++.....+ ..++...|++...+.|+.+++..|.+.+.
T Consensus 4 ~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~ 49 (83)
T 3aji_B 4 RQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGM 49 (83)
T ss_dssp HHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 34777777766555 36788889998866999999999987554
No 70
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=29.06 E-value=83 Score=22.31 Aligned_cols=72 Identities=11% Similarity=0.083 Sum_probs=44.1
Q ss_pred HHHHHHHHh-cccccHHHHHHhhcCCCHHHHHHHHHHcCceEeC--------CceEEeCCCCccccccccccccccchHH
Q psy5242 140 FVCHVVGIT-FQTIDKKLLSELLDGVEDSTLRLWVKKYGWKELD--------NGYIFIANQDENIKTKNITEKIEFENAA 210 (217)
Q Consensus 140 ~I~~vVs~t-yqsIs~~~La~~LG~ls~~el~~~v~~~GWt~~~--------~g~v~p~n~en~~k~~~i~E~i~~~~~~ 210 (217)
.+.+.|..- -..++++.|++.+| ++...|....++.|-+... .-.-.-.+++- .-+.|.+.+.|.+.+
T Consensus 11 ~~~~~i~~~~~~~~~~~~lA~~~~-~S~~~l~r~fk~~G~s~~~~~~~~Rl~~A~~lL~~~~~--si~eIA~~~Gf~~~s 87 (120)
T 3mkl_A 11 RVCTVINNNIAHEWTLARIASELL-MSPSLLKKKLREEETSYSQLLTECRMQRALQLIVIHGF--SIKRVAVSCGYHSVS 87 (120)
T ss_dssp HHHHHHHTSTTSCCCHHHHHHHTT-CCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTSTTC--CHHHHHHHTTCSCHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHC-cCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHCCCCHH
Confidence 344444444 35789999999997 9999999999877866520 00001123332 234677777777655
Q ss_pred HHhh
Q psy5242 211 TIMT 214 (217)
Q Consensus 211 ~~~~ 214 (217)
...+
T Consensus 88 ~F~r 91 (120)
T 3mkl_A 88 YFIY 91 (120)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 71
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=28.71 E-value=63 Score=24.95 Aligned_cols=40 Identities=15% Similarity=0.412 Sum_probs=28.6
Q ss_pred cccHHHHHHhhcCCCHHHHHHHHH---HcCceEeCCceEEeCCC
Q psy5242 151 TIDKKLLSELLDGVEDSTLRLWVK---KYGWKELDNGYIFIANQ 191 (217)
Q Consensus 151 sIs~~~La~~LG~ls~~el~~~v~---~~GWt~~~~g~v~p~n~ 191 (217)
.++...||++|| ++.+.+-..++ +.||-.-+.+.+.+.++
T Consensus 177 ~~t~~~lA~~lg-~sr~tvsR~l~~l~~~g~I~~~~~~i~i~d~ 219 (227)
T 3d0s_A 177 DLTQEEIAQLVG-ASRETVNKALADFAHRGWIRLEGKSVLISDS 219 (227)
T ss_dssp CCCHHHHHHHHT-SCHHHHHHHHHHHHHTTSEEEETTEEEESCH
T ss_pred CCCHHHHHHHhC-CcHHHHHHHHHHHHHCCCEEecCCEEEEcCH
Confidence 479999999998 89987776665 47994434455555543
No 72
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=28.45 E-value=1.1e+02 Score=23.55 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=27.7
Q ss_pred cccHHHHHHhhcCCCHHHHHHHHH---HcCceEeCCc-eEEeCCC
Q psy5242 151 TIDKKLLSELLDGVEDSTLRLWVK---KYGWKELDNG-YIFIANQ 191 (217)
Q Consensus 151 sIs~~~La~~LG~ls~~el~~~v~---~~GWt~~~~g-~v~p~n~ 191 (217)
.++...+|++|| ++.+.+-..++ +.||-.-..+ .+.+.++
T Consensus 163 ~~t~~~lA~~lG-~sr~tvsR~l~~L~~~g~I~~~~~~i~~i~d~ 206 (222)
T 1ft9_A 163 DFTVEEIANLIG-SSRQTTSTALNSLIKEGYISRQGRGHYTIPNL 206 (222)
T ss_dssp CCCHHHHHHHHC-SCHHHHHHHHHHHHHTTSSEECSTTCEECSSH
T ss_pred cCCHHHHHHHhC-CcHHHHHHHHHHHHHCCcEEEcCCceEEEcCH
Confidence 479999999998 89987766665 5799433333 3455454
No 73
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=28.24 E-value=1.4e+02 Score=20.33 Aligned_cols=45 Identities=9% Similarity=0.027 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHhcc---cccHHHHHHhhcCCCHHHHHHHHHH---cCceE
Q psy5242 134 NDSIRKFVCHVVGITFQ---TIDKKLLSELLDGVEDSTLRLWVKK---YGWKE 180 (217)
Q Consensus 134 ed~IR~~I~~vVs~tyq---sIs~~~La~~LG~ls~~el~~~v~~---~GWt~ 180 (217)
.+.+.+.|+.++. ... .++...|++-|| ++...+...+.+ .|+-.
T Consensus 8 ~~~~~~~IL~~L~-~~~pg~~~t~~eLA~~Lg-vsr~tV~~~L~~Le~~G~I~ 58 (81)
T 1qbj_A 8 YQDQEQRILKFLE-ELGEGKATTAHDLSGKLG-TPKKEINRVLYSLAKKGKLQ 58 (81)
T ss_dssp HHHHHHHHHHHHH-HHCTTCCBCHHHHHHHHT-CCHHHHHHHHHHHHHTTSEE
T ss_pred chHHHHHHHHHHH-HcCCCCCcCHHHHHHHHC-cCHHHHHHHHHHHHHCCCEE
Confidence 4456777887777 445 899999999997 999999998774 68854
No 74
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=28.02 E-value=85 Score=17.60 Aligned_cols=37 Identities=14% Similarity=0.223 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHHH
Q psy5242 135 DSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKK 175 (217)
Q Consensus 135 d~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~~ 175 (217)
+..|..|.... .+-.+...+++.|| ++...+..|+..
T Consensus 8 ~~~~~~i~~~~---~~g~s~~~IA~~lg-is~~Tv~~~~~~ 44 (51)
T 1tc3_C 8 DTERAQLDVMK---LLNVSLHEMSRKIS-RSRHCIRVYLKD 44 (51)
T ss_dssp HHHHHHHHHHH---HTTCCHHHHHHHHT-CCHHHHHHHHHC
T ss_pred HHHHHHHHHHH---HcCCCHHHHHHHHC-cCHHHHHHHHhh
Confidence 33454555443 35678999999997 999999999874
No 75
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=27.81 E-value=92 Score=22.89 Aligned_cols=44 Identities=11% Similarity=0.175 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHHH---cCceE
Q psy5242 135 DSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKK---YGWKE 180 (217)
Q Consensus 135 d~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~~---~GWt~ 180 (217)
|.++..|+..+.. ...++...|++.+| +|...+...+++ .|+-.
T Consensus 4 d~~d~~il~~L~~-~~~~s~~ela~~lg-~s~~tv~~~l~~L~~~G~i~ 50 (144)
T 2cfx_A 4 DQIDLNIIEELKK-DSRLSMRELGRKIK-LSPPSVTERVRQLESFGIIK 50 (144)
T ss_dssp CHHHHHHHHHHHH-CSCCCHHHHHHHHT-CCHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHHHHH-cCCCCHHHHHHHHC-cCHHHHHHHHHHHHHCCCeE
Confidence 4566778887754 47899999999997 899888887774 68853
No 76
>2ccq_A P97, peptide N-glycanase homolog; glycoprotein; 1.6A {Homo sapiens} SCOP: d.314.1.1 PDB: 2hpl_A 2hpj_A 2cm0_A
Probab=27.70 E-value=50 Score=23.79 Aligned_cols=56 Identities=14% Similarity=0.177 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHH----hcccccHH--HHHHhhcCCCHHHHHHHHHHcCceEeCCceEEeCCC
Q psy5242 134 NDSIRKFVCHVVGI----TFQTIDKK--LLSELLDGVEDSTLRLWVKKYGWKELDNGYIFIANQ 191 (217)
Q Consensus 134 ed~IR~~I~~vVs~----tyqsIs~~--~La~~LG~ls~~el~~~v~~~GWt~~~~g~v~p~n~ 191 (217)
.+.+++++.+++.. -|++|..+ .+.+-++.+.+ ..+++...||...+++.++|.+.
T Consensus 22 ~~tL~k~l~Nil~~P~e~KyR~Ir~~N~~f~~~v~~~~G--~~e~L~a~GF~~~~~~l~lp~~~ 83 (99)
T 2ccq_A 22 SKLLLTYADNILRNPNDEKYRSIRIGNTAFSTRLLPVRG--AVECLFEMGFEEGETHLIFPKKA 83 (99)
T ss_dssp HHHHHHHHHHHHHCTTCGGGGEEETTCHHHHHHTTTSTT--HHHHHHHHTCEECSSEEECCTTS
T ss_pred HHHHHHHHHHHHcCCCCcccceeecCCHHHHHHhcCCcc--HHHHHHHccceeCCCeeecCCCC
Confidence 34567777777754 57887664 56676664554 46888889999877777887654
No 77
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=25.97 E-value=42 Score=19.46 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=22.2
Q ss_pred cccHHHHHHhhcCCCHHHHHHHHHHcCc
Q psy5242 151 TIDKKLLSELLDGVEDSTLRLWVKKYGW 178 (217)
Q Consensus 151 sIs~~~La~~LG~ls~~el~~~v~~~GW 178 (217)
..+...+++.+| ++...+..|+.+.|.
T Consensus 21 g~s~~~ia~~lg-vs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 21 GHPRQQLAIIFG-IGVSTLYRYFPASSI 47 (52)
T ss_dssp TCCHHHHHHTTS-CCHHHHHHHSCTTC-
T ss_pred CCCHHHHHHHHC-CCHHHHHHHHHHccc
Confidence 478899999997 899999998876654
No 78
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=25.65 E-value=1.1e+02 Score=22.49 Aligned_cols=44 Identities=14% Similarity=0.126 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHH---HcCceE
Q psy5242 135 DSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVK---KYGWKE 180 (217)
Q Consensus 135 d~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~---~~GWt~ 180 (217)
|..+..|+..+. .-..++...|++.+| ++...+...++ +.|+-.
T Consensus 6 d~~~~~iL~~L~-~~~~~s~~ela~~lg-~s~~tv~~~l~~L~~~G~i~ 52 (150)
T 2w25_A 6 DDIDRILVRELA-ADGRATLSELATRAG-LSVSAVQSRVRRLESRGVVQ 52 (150)
T ss_dssp CHHHHHHHHHHH-HCTTCCHHHHHHHHT-SCHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHHHH-HcCCCCHHHHHHHHC-cCHHHHHHHHHHHHHCCCEE
Confidence 456778888775 457899999999997 99988888777 478853
No 79
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=25.59 E-value=45 Score=29.14 Aligned_cols=54 Identities=22% Similarity=0.238 Sum_probs=34.6
Q ss_pred CchhhhccchHHHHHH--------HHHHHHHHhcccccHHHHHHhhc-CC-CHHHHHHHHHHcCc
Q psy5242 124 PDLFLNIEGFNDSIRK--------FVCHVVGITFQTIDKKLLSELLD-GV-EDSTLRLWVKKYGW 178 (217)
Q Consensus 124 ~~l~~~i~gFed~IR~--------~I~~vVs~tyqsIs~~~La~~LG-~l-s~~el~~~v~~~GW 178 (217)
+.+...|.||+-.|-. .|.. .-.||..-+-+.|.--|- .+ .++...+-+++.|-
T Consensus 245 RpLlvsIvgye~lvgt~v~~Kk~n~iyy-qLaTFdnypfdllRfqL~Slistp~~I~e~i~K~GL 308 (368)
T 3vjj_A 245 RPLLISIIGYEHLIGTRVPNKEVNHIFY-QLATFDNYPFDLLRFQLSSLISTPALIREKIAKEGL 308 (368)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCCCCHHHH-HHHHCTTCBHHHHHHHCSSCCCCCHHHHHHHHHSCS
T ss_pred ceeeeeeechhhhccccccccccchhee-eeecCCCCCHHHHHHHhhhhccChHHHHHHHHhcCc
Confidence 5667788888876443 2222 335788888888866652 12 33667777788774
No 80
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=25.55 E-value=1.1e+02 Score=20.84 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhc---ccccHHHHHHhhcCCCHHHHHHHHHHcCc
Q psy5242 138 RKFVCHVVGITF---QTIDKKLLSELLDGVEDSTLRLWVKKYGW 178 (217)
Q Consensus 138 R~~I~~vVs~ty---qsIs~~~La~~LG~ls~~el~~~v~~~GW 178 (217)
|..|+++..... ..++...|++...+.+|.++...|.+.+-
T Consensus 6 R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~ 49 (88)
T 3vlf_B 6 RANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGM 49 (88)
T ss_dssp HHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 666666555443 35778889888866899999999987553
No 81
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=25.49 E-value=67 Score=23.00 Aligned_cols=50 Identities=12% Similarity=-0.055 Sum_probs=38.8
Q ss_pred hhccchHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHHH---cCceE
Q psy5242 128 LNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKK---YGWKE 180 (217)
Q Consensus 128 ~~i~gFed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~~---~GWt~ 180 (217)
.....+.+..|..|+..+.. ...+...|++.|| ++...+-..++. .|+-.
T Consensus 13 ~~~~aL~~~~r~~IL~~L~~--~~~~~~eLa~~lg-is~stvs~~L~~L~~~GlV~ 65 (118)
T 2jsc_A 13 RLGRALADPTRCRILVALLD--GVCYPGQLAAHLG-LTRSNVSNHLSCLRGCGLVV 65 (118)
T ss_dssp THHHHHSSHHHHHHHHHHHT--TCCSTTTHHHHHS-SCHHHHHHHHHHHTTTTSEE
T ss_pred HHHHHhCCHHHHHHHHHHHc--CCCCHHHHHHHHC-cCHHHHHHHHHHHHHCCceE
Confidence 33444557889999998863 5678889999997 999998888874 78854
No 82
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=25.48 E-value=90 Score=22.48 Aligned_cols=39 Identities=15% Similarity=0.034 Sum_probs=28.6
Q ss_pred HHHHHHHh-cccccHHHHHHhhcCCCHHHHHHHHHHc-CceE
Q psy5242 141 VCHVVGIT-FQTIDKKLLSELLDGVEDSTLRLWVKKY-GWKE 180 (217)
Q Consensus 141 I~~vVs~t-yqsIs~~~La~~LG~ls~~el~~~v~~~-GWt~ 180 (217)
+...|..- -..++++.+++.+| +|...|....++. |=+.
T Consensus 16 ~~~~i~~~~~~~~sl~~lA~~~~-~S~~~l~r~fk~~~G~s~ 56 (129)
T 1bl0_A 16 ILDWIEDNLESPLSLEKVSERSG-YSKWHLQRMFKKETGHSL 56 (129)
T ss_dssp HHHHHHTTTTSCCCCHHHHHHSS-SCHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHccCCCCCHHHHHHHHC-cCHHHHHHHHHHHHCcCH
Confidence 33334444 34699999999997 8999999988874 7654
No 83
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=25.45 E-value=82 Score=22.16 Aligned_cols=43 Identities=14% Similarity=0.139 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHHH---cCceE
Q psy5242 135 DSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKK---YGWKE 180 (217)
Q Consensus 135 d~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~~---~GWt~ 180 (217)
+..|-.|+..+.. ..++...+++.|| ++...+-..++. .||-.
T Consensus 31 ~~~~~~il~~L~~--~~~s~~ela~~l~-is~stvsr~l~~Le~~Glv~ 76 (119)
T 2lkp_A 31 TPSRLMILTQLRN--GPLPVTDLAEAIG-MEQSAVSHQLRVLRNLGLVV 76 (119)
T ss_dssp CHHHHHHHHHHHH--CCCCHHHHHHHHS-SCHHHHHHHHHHHHHHCSEE
T ss_pred CHHHHHHHHHHHH--CCCCHHHHHHHHC-cCHHHHHHHHHHHHHCCCEE
Confidence 3567778888875 6799999999997 899887777764 69965
No 84
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=25.42 E-value=63 Score=25.12 Aligned_cols=38 Identities=18% Similarity=0.134 Sum_probs=27.3
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHH---HcCceEeCCceEEeCCC
Q psy5242 152 IDKKLLSELLDGVEDSTLRLWVK---KYGWKELDNGYIFIANQ 191 (217)
Q Consensus 152 Is~~~La~~LG~ls~~el~~~v~---~~GWt~~~~g~v~p~n~ 191 (217)
++...+|++|| ++.+.+-..++ +.|+.. ..+.+.+.++
T Consensus 179 ~t~~~iA~~lg-~sr~tvsR~l~~L~~~gi~~-~~~~i~I~d~ 219 (237)
T 3fx3_A 179 YDKMLIAGRLG-MKPESLSRAFSRLKAAGVTV-KRNHAEIEDI 219 (237)
T ss_dssp SCTHHHHHHTT-CCHHHHHHHHHHHGGGTEEC-CTTEEEESCH
T ss_pred CCHHHHHHHhC-CCHHHHHHHHHHHHHCCeEe-eCCEEEEcCH
Confidence 44789999998 89988877776 479854 3455555544
No 85
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=25.13 E-value=1.4e+02 Score=19.89 Aligned_cols=47 Identities=15% Similarity=0.195 Sum_probs=32.9
Q ss_pred chHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHH---HcCceE
Q psy5242 132 GFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVK---KYGWKE 180 (217)
Q Consensus 132 gFed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~---~~GWt~ 180 (217)
|+...-+..+..++ ..-..++...|++.+| ++...+...+. +.||-.
T Consensus 18 ~l~~~~~~~l~~l~-~~~~~~t~~ela~~l~-is~~tv~~~l~~L~~~g~v~ 67 (109)
T 2d1h_A 18 KITDTDVAVLLKMV-EIEKPITSEELADIFK-LSKTTVENSLKKLIELGLVV 67 (109)
T ss_dssp TCCHHHHHHHHHHH-HHCSCEEHHHHHHHHT-CCHHHHHHHHHHHHHTTSEE
T ss_pred cCCHHHHHHHHHHH-HcCCCCCHHHHHHHHC-cCHHHHHHHHHHHHHCCCeE
Confidence 44444444444444 4467899999999997 99988888877 479954
No 86
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=24.67 E-value=2e+02 Score=23.65 Aligned_cols=50 Identities=10% Similarity=0.093 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHHHc-CceEeCCceE
Q psy5242 135 DSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKY-GWKELDNGYI 186 (217)
Q Consensus 135 d~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~~~-GWt~~~~g~v 186 (217)
-.++..+.+.+. .=+-.+++.|+.-+| .+.+++.+.+.+. ++..|++|.|
T Consensus 21 ~~~~~~llr~la-~Grpv~~~~LA~~~g-~~~~~v~~~L~~l~~~~~D~~G~I 71 (220)
T 3f2g_A 21 ADLLVPLLRELA-KGRPVSRTTLAGILD-WPAERVAAVLEQATSTEYDKDGNI 71 (220)
T ss_dssp HHHHHHHHHHHT-TTSCBCHHHHHHHHT-CCHHHHHHHHHHCTTCEECTTSCE
T ss_pred hHHHHHHHHHHh-cCCCCCHHHHHHHhC-cCHHHHHHHHHhCCcEEECCCCCE
Confidence 347778888888 888999999999997 9999999999985 5667777744
No 87
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=24.07 E-value=1.4e+02 Score=20.31 Aligned_cols=41 Identities=12% Similarity=0.185 Sum_probs=29.7
Q ss_pred HHHHHHHHHHh------cccccHHHHHHhhcCCCHHHHHHHHH---HcCceE
Q psy5242 138 RKFVCHVVGIT------FQTIDKKLLSELLDGVEDSTLRLWVK---KYGWKE 180 (217)
Q Consensus 138 R~~I~~vVs~t------yqsIs~~~La~~LG~ls~~el~~~v~---~~GWt~ 180 (217)
++.|+..|... | .+++..+++.|| +|...+...+. +.|.-.
T Consensus 6 ~~~IL~~I~~~i~~~~g~-~psv~EIa~~lg-vS~~TVrr~L~~Le~kG~I~ 55 (77)
T 2jt1_A 6 VTKIISIVQERQNMDDGA-PVKTRDIADAAG-LSIYQVRLYLEQLHDVGVLE 55 (77)
T ss_dssp HHHHHHHHHHHHHHHTTS-CEEHHHHHHHHT-CCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHhhccCC-CcCHHHHHHHHC-CCHHHHHHHHHHHHHCCcEE
Confidence 44555555554 5 599999999998 79888888776 467643
No 88
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=23.57 E-value=1e+02 Score=21.45 Aligned_cols=42 Identities=12% Similarity=0.017 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHHH---cCceE
Q psy5242 136 SIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKK---YGWKE 180 (217)
Q Consensus 136 ~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~~---~GWt~ 180 (217)
++++.|+.++. .-. ++...|+.-|| ++...+.+.+.. .|.-.
T Consensus 17 ~~~~~IL~lL~-~~g-~sa~eLAk~Lg-iSk~aVr~~L~~Le~eG~I~ 61 (82)
T 1oyi_A 17 EIVCEAIKTIG-IEG-ATAAQLTRQLN-MEKREVNKALYDLQRSAMVY 61 (82)
T ss_dssp HHHHHHHHHHS-SST-EEHHHHHHHSS-SCHHHHHHHHHHHHHHTSSE
T ss_pred HHHHHHHHHHH-HcC-CCHHHHHHHHC-cCHHHHHHHHHHHHHCCCEE
Confidence 57888888888 444 99999999997 999999999874 46644
No 89
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=23.07 E-value=1.1e+02 Score=22.40 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHH---HcCce
Q psy5242 135 DSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVK---KYGWK 179 (217)
Q Consensus 135 d~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~---~~GWt 179 (217)
|.++..|+..+.. -..++...|++.|| ++...+...++ +.|+-
T Consensus 2 d~~~~~il~~L~~-~~~~~~~ela~~lg-~s~~tv~~~l~~L~~~G~i 47 (150)
T 2pn6_A 2 DEIDLRILKILQY-NAKYSLDEIAREIR-IPKATLSYRIKKLEKDGVI 47 (150)
T ss_dssp CHHHHHHHHHHTT-CTTSCHHHHHHHHT-SCHHHHHHHHHHHHHTTSS
T ss_pred ChHHHHHHHHHHH-cCCCCHHHHHHHHC-cCHHHHHHHHHHHHHCCcE
Confidence 4567888887754 45799999999997 99988887777 46873
No 90
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=23.06 E-value=1.8e+02 Score=20.72 Aligned_cols=50 Identities=16% Similarity=0.076 Sum_probs=33.9
Q ss_pred hccchHHHHHHHHHHHHHH--hcccccHHHHHHhhcCCCHHHHHHHHHHcCce
Q psy5242 129 NIEGFNDSIRKFVCHVVGI--TFQTIDKKLLSELLDGVEDSTLRLWVKKYGWK 179 (217)
Q Consensus 129 ~i~gFed~IR~~I~~vVs~--tyqsIs~~~La~~LG~ls~~el~~~v~~~GWt 179 (217)
..++|.++-|+.+-.++.. .....+...||+-.| .|...+-.||++.|.+
T Consensus 15 ~~~~ls~~e~~ia~yil~~~~~~~~~si~elA~~~~-vS~aTv~Rf~kklG~~ 66 (111)
T 2o3f_A 15 MXHXLPPSERKLADYILAHPHXAIESTVNEISALAN-SSDAAVIRLCXSLGLK 66 (111)
T ss_dssp HGGGSCHHHHHHHHHHHHCHHHHHTCCHHHHHHHTT-CCHHHHHHHHHHTTCS
T ss_pred HhccCCHHHHHHHHHHHHChHHHHhcCHHHHHHHHC-CCHHHHHHHHHHcCCC
Confidence 3455655544433333322 234678899999997 9999999999998764
No 91
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=22.59 E-value=41 Score=22.74 Aligned_cols=30 Identities=13% Similarity=0.352 Sum_probs=21.4
Q ss_pred HHHHHh--ccccCCCCCchhHHHHHHHHHHhc
Q psy5242 10 SVDQLL--VGIERYNPEHLSTLEKYVEVQCAE 39 (217)
Q Consensus 10 ~i~~~l--~g~~rYnp~~l~~Le~yv~~Q~~~ 39 (217)
.|..+| .|++||.|.-...|-++++....+
T Consensus 6 ~i~~iLk~~G~~~~~~~v~~~L~e~~~ry~~~ 37 (68)
T 1taf_A 6 VIMSILKELNVQEYEPRVVNQLLEFTFRYVTS 37 (68)
T ss_dssp HHHHHHHHTTCCCBCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcccCHHHHHHHHHHHHHHHHH
Confidence 344454 489999999888877777666543
No 92
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.28 E-value=56 Score=21.76 Aligned_cols=26 Identities=4% Similarity=0.038 Sum_probs=20.7
Q ss_pred HHHHHhhcCCCHHHHHHHHHHcCceEe
Q psy5242 155 KLLSELLDGVEDSTLRLWVKKYGWKEL 181 (217)
Q Consensus 155 ~~La~~LG~ls~~el~~~v~~~GWt~~ 181 (217)
..+.+..| .+++..+.+++..+|.++
T Consensus 22 ~qF~~iTg-~~~~~A~~~Le~~~WdLe 47 (66)
T 2dzl_A 22 NQFVLAAG-CAADQAKQLLQAAHWQFE 47 (66)
T ss_dssp HHHHHHHC-CCHHHHHHHHHTTTTCHH
T ss_pred HHHHHHcC-CCHHHHHHHHHHcCCCHH
Confidence 34556677 788899999999999875
No 93
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=22.12 E-value=1.5e+02 Score=21.01 Aligned_cols=41 Identities=15% Similarity=0.055 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHH---HcCceE
Q psy5242 137 IRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVK---KYGWKE 180 (217)
Q Consensus 137 IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~---~~GWt~ 180 (217)
-+-.|+..+. ...++...|++.+| ++...+...+. +.||-.
T Consensus 38 ~~~~iL~~l~--~~~~~~~ela~~l~-~s~~tvs~~l~~Le~~glv~ 81 (146)
T 2gxg_A 38 LDFLVLRATS--DGPKTMAYLANRYF-VTQSAITASVDKLEEMGLVV 81 (146)
T ss_dssp HHHHHHHHHT--TSCBCHHHHHHHTT-CCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHh--cCCcCHHHHHHHhC-CCchhHHHHHHHHHHCCCEE
Confidence 4556777777 88999999999997 89988777766 479964
No 94
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=21.70 E-value=1e+02 Score=21.17 Aligned_cols=46 Identities=11% Similarity=0.156 Sum_probs=35.3
Q ss_pred hhccchHHHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHHH
Q psy5242 128 LNIEGFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKK 175 (217)
Q Consensus 128 ~~i~gFed~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~~ 175 (217)
.....+.+..|..|+..+.. ....+...+++-|| ++...+-..++.
T Consensus 19 ~~~~aL~~~~Rl~IL~~l~~-~~~~~~~ela~~l~-is~stvs~hL~~ 64 (99)
T 2zkz_A 19 ELLKTMAHPMRLKIVNELYK-HKALNVTQIIQILK-LPQSTVSQHLCK 64 (99)
T ss_dssp HHHHHHCSHHHHHHHHHHHH-HSCEEHHHHHHHHT-CCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH-CCCcCHHHHHHHHC-cCHHHHHHHHHH
Confidence 33445567789999855433 36789999999997 999999998885
No 95
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=21.68 E-value=66 Score=22.44 Aligned_cols=43 Identities=9% Similarity=0.054 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHH---HcCce
Q psy5242 136 SIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVK---KYGWK 179 (217)
Q Consensus 136 ~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~---~~GWt 179 (217)
..|..|+..+...=+.++...|++-+| ++...+.+.+. +.||-
T Consensus 18 ~~~l~Il~~l~~~g~~~s~~eLa~~lg-vs~~tV~~~L~~L~~~GlV 63 (110)
T 1q1h_A 18 DDVIDVLRILLDKGTEMTDEEIANQLN-IKVNDVRKKLNLLEEQGFV 63 (110)
T ss_dssp STTHHHHHHHHHHCSCBCHHHHHHTTT-SCHHHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHC-cCHHHHHHHHHHHHHCCCE
Confidence 466677776655444699999999997 99988888877 47994
No 96
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=21.62 E-value=1.2e+02 Score=22.20 Aligned_cols=44 Identities=11% Similarity=0.233 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHHH---cCceE
Q psy5242 135 DSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKK---YGWKE 180 (217)
Q Consensus 135 d~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~~---~GWt~ 180 (217)
|.++..|+..+.. -..++...|++.+| +|...+...+++ .|+-.
T Consensus 8 d~~d~~il~~L~~-~~~~s~~ela~~lg-~s~~tv~~~l~~L~~~G~i~ 54 (151)
T 2dbb_A 8 DRVDMQLVKILSE-NSRLTYRELADILN-TTRQRIARRIDKLKKLGIIR 54 (151)
T ss_dssp CHHHHHHHHHHHH-CTTCCHHHHHHHTT-SCHHHHHHHHHHHHHHTSEE
T ss_pred CHHHHHHHHHHHH-cCCCCHHHHHHHHC-cCHHHHHHHHHHHHHCCCEE
Confidence 4567778887764 47899999999997 899888877764 68743
No 97
>2kvv_A Putative excisionase; DNA binding, WHTH motif, structural genomics, N structural genomics consortium (NESG), PSI-2; NMR {Klebsiella pneumoniae}
Probab=21.37 E-value=78 Score=22.11 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=22.3
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHcCceE
Q psy5242 152 IDKKLLSELLDGVEDSTLRLWVKKYGWKE 180 (217)
Q Consensus 152 Is~~~La~~LG~ls~~el~~~v~~~GWt~ 180 (217)
++.+.|.+.+| ++...++.+-+ .-|-.
T Consensus 11 V~e~~l~a~tG-Ls~~tIkryR~-~~WlE 37 (78)
T 2kvv_A 11 MVEKALMVRTG-LGARQIESYRQ-GAWIE 37 (78)
T ss_dssp ECHHHHHHHHC-CCHHHHHHHHT-TTCCB
T ss_pred hCHHHHHHHHC-CCHHHHHHHHh-chhhh
Confidence 56789999998 99999999984 66844
No 98
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=21.34 E-value=1.8e+02 Score=20.52 Aligned_cols=43 Identities=12% Similarity=0.033 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHH---HcCceE
Q psy5242 137 IRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVK---KYGWKE 180 (217)
Q Consensus 137 IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~---~~GWt~ 180 (217)
-+-.|+..+......++...|++.+| ++...+...+. +.||-.
T Consensus 36 ~~~~iL~~l~~~~~~~~~~~la~~l~-i~~~~vs~~l~~Le~~glv~ 81 (147)
T 2hr3_A 36 SQLVVLGAIDRLGGDVTPSELAAAER-MRSSNLAALLRELERGGLIV 81 (147)
T ss_dssp HHHHHHHHHHHTTSCBCHHHHHHHTT-CCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHhC-CChhhHHHHHHHHHHCCCEe
Confidence 34556677766567899999999997 89988777776 479954
No 99
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.32 E-value=63 Score=21.08 Aligned_cols=26 Identities=4% Similarity=-0.002 Sum_probs=20.3
Q ss_pred HHHHHhhcCCCHHHHHHHHHHcCceEe
Q psy5242 155 KLLSELLDGVEDSTLRLWVKKYGWKEL 181 (217)
Q Consensus 155 ~~La~~LG~ls~~el~~~v~~~GWt~~ 181 (217)
..+.+..| .+++....++..++|.++
T Consensus 20 ~qF~~iTg-~~~~~A~~~Le~~~WnLe 45 (62)
T 2dal_A 20 QQFTTITG-ASESVGKHMLEACNNNLE 45 (62)
T ss_dssp HHHHHHTC-CCHHHHHHHHHTTTSCHH
T ss_pred HHHHHHhC-CCHHHHHHHHHHcCCCHH
Confidence 34556676 788889999999999875
No 100
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=21.30 E-value=1.2e+02 Score=22.26 Aligned_cols=43 Identities=16% Similarity=0.127 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHHH---cCce
Q psy5242 135 DSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKK---YGWK 179 (217)
Q Consensus 135 d~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~~---~GWt 179 (217)
|.++..|+..+.. -..++...|++.+| +|...+...+++ .|+-
T Consensus 7 d~~d~~il~~L~~-~~~~s~~ela~~lg-~s~~tv~~~l~~L~~~G~i 52 (152)
T 2cg4_A 7 DNLDRGILEALMG-NARTAYAELAKQFG-VSPETIHVRVEKMKQAGII 52 (152)
T ss_dssp CHHHHHHHHHHHH-CTTSCHHHHHHHHT-SCHHHHHHHHHHHHHHTSE
T ss_pred CHHHHHHHHHHHH-cCCCCHHHHHHHHC-cCHHHHHHHHHHHHHcCCc
Confidence 4567778887754 36899999999997 999888887774 6774
No 101
>1ru0_A DCOH-like protein dcohm; alpha and beta structure, lyase; 1.60A {Mus musculus} SCOP: d.74.1.1
Probab=20.98 E-value=62 Score=23.42 Aligned_cols=20 Identities=20% Similarity=0.468 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHc---CceEeCC
Q psy5242 164 VEDSTLRLWVKKY---GWKELDN 183 (217)
Q Consensus 164 ls~~el~~~v~~~---GWt~~~~ 183 (217)
|+++|+++.+.+. ||+..++
T Consensus 10 Ls~~ei~~~L~~l~~~gW~~~~~ 32 (105)
T 1ru0_A 10 LTAEERDQLIPGLKAAGWSELSE 32 (105)
T ss_dssp CCHHHHHHHHHHHHHTTCEECSS
T ss_pred CCHHHHHHHHHhCCCCCCeEECC
Confidence 6889999998875 9998543
No 102
>3jst_A Putative pterin-4-alpha-carbinolamine dehydratase; lyase, structural genomics, seattle structural genomics CENT infectious disease, ssgcid; 2.10A {Brucella melitensis} SCOP: d.74.1.0
Probab=20.87 E-value=66 Score=22.89 Aligned_cols=20 Identities=20% Similarity=0.582 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHH-cCceEeCC
Q psy5242 164 VEDSTLRLWVKK-YGWKELDN 183 (217)
Q Consensus 164 ls~~el~~~v~~-~GWt~~~~ 183 (217)
|+++|+++.+.+ .||++.++
T Consensus 6 Ls~~ei~~~L~~l~gW~~~~~ 26 (97)
T 3jst_A 6 LTESEMNEALRALDGWQKVDG 26 (97)
T ss_dssp CCHHHHHHHHHTSTTCEECTT
T ss_pred CCHHHHHHHhhcCCCCeEeCC
Confidence 688999999988 49999644
No 103
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=20.82 E-value=1.3e+02 Score=24.18 Aligned_cols=70 Identities=14% Similarity=0.103 Sum_probs=44.2
Q ss_pred HHHHHHHhcc-cccHHHHHHhhcCCCHHHHHHHHHHcCceEeC---------CceEEeCCCCccccccccccccccchHH
Q psy5242 141 VCHVVGITFQ-TIDKKLLSELLDGVEDSTLRLWVKKYGWKELD---------NGYIFIANQDENIKTKNITEKIEFENAA 210 (217)
Q Consensus 141 I~~vVs~tyq-sIs~~~La~~LG~ls~~el~~~v~~~GWt~~~---------~g~v~p~n~en~~k~~~i~E~i~~~~~~ 210 (217)
+...|..-|. .++++.+|+.+| +|...+....++.|-|... .. ..-.+++ ..-+.|.+.+.|.+.+
T Consensus 174 ~~~~i~~~~~~~~sl~~lA~~~~-~S~~~l~r~fk~~G~t~~~~l~~~Rl~~A~-~lL~~~~--~si~eIA~~~Gf~~~s 249 (276)
T 3gbg_A 174 ISCLVKSDITRNWRWADICGELR-TNRMILKKELESRGVKFRELINSIRISYSI-SLMKTGE--FKIKQIAYQSGFASVS 249 (276)
T ss_dssp HHHHHHHTTTSCCCHHHHHHHHT-CCHHHHHHHHHTTTCCHHHHHHHHHHHHHH-HHHHHTC--CCHHHHHHHTTCSCHH
T ss_pred HHHHHHHhhcCCCCHHHHHHHHC-cCHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHhCCC--CCHHHHHHHhCCCCHH
Confidence 3344444544 599999999997 9999999999877866520 00 0012222 2334677788887665
Q ss_pred HHhh
Q psy5242 211 TIMT 214 (217)
Q Consensus 211 ~~~~ 214 (217)
...+
T Consensus 250 ~F~r 253 (276)
T 3gbg_A 250 YFST 253 (276)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 104
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=20.67 E-value=92 Score=21.93 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=36.1
Q ss_pred CCCchhHHHHHHHHHHhccccch--HhhHHHHHhhhcCCCCChHHHHHHHHHHhhcCC
Q psy5242 22 NPEHLSTLEKYVEVQCAENVYDL--EANLAVLKLYQFHQNYNMKITSQILLKALTNFP 77 (217)
Q Consensus 22 np~~l~~Le~yv~~Q~~~~~Yd~--~aNlalLKLYqfnP~~~~~vv~~ILlkaL~~~P 77 (217)
|.+-=+.|++||+.|++.|.|.- ++-.+.|++.+--- -..+-....|..++-.-|
T Consensus 7 sIsL~~~l~~~i~~~V~sG~Y~s~SEviR~~lR~l~~re-~~l~~Lr~~l~~G~~Sg~ 63 (88)
T 3kxe_C 7 SVVLGDHFQAFIDSQVADGRYGSASEVIRAGLRLLEENE-AKLAALRAALIEGEESGF 63 (88)
T ss_dssp EECCCHHHHHHHHHHHTTTSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTCE
T ss_pred eeecCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHCCC
Confidence 34445689999999999999943 67778888876431 222345555556655444
No 105
>2ebb_A Pterin-4-alpha-carbinolamine dehydratase; coenzyme biosyntheses, GK1984, structural genomics, NPPSFA; 1.60A {Geobacillus kaustophilus}
Probab=20.57 E-value=70 Score=22.99 Aligned_cols=20 Identities=25% Similarity=0.582 Sum_probs=16.2
Q ss_pred CCHHHHHHHHHH-cCceEeCC
Q psy5242 164 VEDSTLRLWVKK-YGWKELDN 183 (217)
Q Consensus 164 ls~~el~~~v~~-~GWt~~~~ 183 (217)
|+++++++.+.+ .||++.++
T Consensus 3 Ls~~ei~~~L~~l~gW~~~~~ 23 (101)
T 2ebb_A 3 LTEEEVQALLEKADGWKLADE 23 (101)
T ss_dssp CCHHHHHHHHHTSTTCEEETT
T ss_pred CCHHHHHHHhhcCCCCeECCC
Confidence 688899998887 59999654
No 106
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=20.29 E-value=2e+02 Score=19.03 Aligned_cols=43 Identities=14% Similarity=0.084 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhcccccHHHHHHhhcCCCHHHHHHHHH---HcCceE
Q psy5242 136 SIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVK---KYGWKE 180 (217)
Q Consensus 136 ~IR~~I~~vVs~tyqsIs~~~La~~LG~ls~~el~~~v~---~~GWt~ 180 (217)
..+..|+..+.. ...++...+++.+| ++...+...++ +.||-.
T Consensus 20 ~~~~~il~~l~~-~~~~s~~ela~~l~-is~~tv~~~l~~L~~~glv~ 65 (109)
T 1sfx_A 20 PSDVRIYSLLLE-RGGMRVSEIARELD-LSARFVRDRLKVLLKRGFVR 65 (109)
T ss_dssp HHHHHHHHHHHH-HCCBCHHHHHHHHT-CCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHH-cCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCCEE
Confidence 345667777744 57799999999997 89988888877 479954
Done!