RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5242
         (217 letters)



>d1rz4a2 a.118.1.18 (A:2-131) Eukaryotic translation initiation
           factor 3 subunit 12, eIF3k, N-terminal domain {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 130

 Score =  173 bits (441), Expect = 1e-56
 Identities = 73/125 (58%), Positives = 91/125 (72%), Gaps = 1/125 (0%)

Query: 4   AELMKGSVDQLLVGIERYNPEHLSTLEKYVEVQCAENVYDLEANLAVLKLYQFH-QNYNM 62
            E M+ +V +LL GI+RYNPE+L+TLE+YVE Q  EN YDLEANLAVLKLYQF+   +  
Sbjct: 3   FEQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAFFQT 62

Query: 63  KITSQILLKALTNFPHTDFILCKCLLSKDLCKEDPIDQIIYLADLLESCKFTQFWSRMHT 122
            +T+QILLKALTN PHTDF LCKC++ +   +E PI QI+YL DLLE+C F  FW  +  
Sbjct: 63  TVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQALDE 122

Query: 123 IPDLF 127
             DL 
Sbjct: 123 NMDLL 127


>d1rz4a1 a.4.5.53 (A:132-216) Eukaryotic translation initiation
           factor 3 subunit 12, eIF3k, C-terminal domain {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 85

 Score =  130 bits (329), Expect = 4e-40
 Identities = 47/84 (55%), Positives = 67/84 (79%)

Query: 132 GFNDSIRKFVCHVVGITFQTIDKKLLSELLDGVEDSTLRLWVKKYGWKELDNGYIFIANQ 191
           GF DS+RKF+CHVVGIT+Q ID+ LL+E+L  + DS L++W+ KYGW   ++G IFI +Q
Sbjct: 2   GFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKYGWSADESGQIFICSQ 61

Query: 192 DENIKTKNITEKIEFENAATIMTS 215
           +E+IK KNI EKI+F++ ++IM S
Sbjct: 62  EESIKPKNIVEKIDFDSVSSIMAS 85


>d1f9ya_ d.58.30.1 (A:) 6-hydroxymethyl-7,8-dihydropterin
           pyrophosphokinase, HPPK {Escherichia coli [TaxId: 562]}
          Length = 158

 Score = 25.5 bits (55), Expect = 4.3
 Identities = 21/149 (14%), Positives = 46/149 (30%), Gaps = 16/149 (10%)

Query: 40  NVYDLEANL--AVLKLYQFHQNYNMKITSQILLKALTNFPHTDFILCKCLLSKDLCKEDP 97
           N+      +  A+  L    +++ + ++S      L      D++     L   L  E+ 
Sbjct: 10  NLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEEL 69

Query: 98  IDQIIYLADLLESCKFTQFWSRMHTIPDLFLNIEGFNDSIRKFVCH-------VVGITFQ 150
           ++    +       +  + W       D+ L      ++ R  V H        +     
Sbjct: 70  LNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLF 129

Query: 151 TI-------DKKLLSELLDGVEDSTLRLW 172
            I       D ++L ++L       L  W
Sbjct: 130 EIAPELVFPDGEMLRQILHTRAFDKLNKW 158


>d1y60a_ d.14.1.12 (A:) Formaldehyde-activating enzyme, FAE
           {Methylobacterium extorquens [TaxId: 408]}
          Length = 168

 Score = 24.3 bits (53), Expect = 9.4
 Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 4/32 (12%)

Query: 52  KLYQFHQNYNMKITSQILLKALTNFPHTDFIL 83
           K+ +    YN + T   + +A+   P    + 
Sbjct: 128 KIQK----YNYEATKLSIQRAVNGEPKASVVT 155


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.406 

Gapped
Lambda     K      H
   0.267   0.0685    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 815,381
Number of extensions: 38285
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 4
Length of query: 217
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 135
Effective length of database: 1,281,736
Effective search space: 173034360
Effective search space used: 173034360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.5 bits)