Query psy5244
Match_columns 90
No_of_seqs 76 out of 78
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 21:24:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5244.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5244hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rz4_A Eukaryotic translation 99.9 1.6E-26 5.5E-31 171.4 2.1 86 4-89 121-217 (226)
2 4b0z_A RPN12, 26S proteasome r 97.5 7.6E-05 2.6E-09 54.3 4.0 49 14-62 171-228 (229)
3 4b4t_T 26S proteasome regulato 97.5 3.8E-05 1.3E-09 57.7 1.9 54 14-67 180-242 (274)
4 2ccq_A P97, peptide N-glycanas 83.2 2 6.9E-05 27.6 4.6 36 27-64 39-83 (99)
5 2d5u_A N-glycanase 1; pngase, 75.2 3.8 0.00013 27.4 4.1 36 27-64 54-98 (124)
6 3t5v_A Nuclear mRNA export pro 73.9 2.5 8.4E-05 32.1 3.2 46 14-59 201-259 (316)
7 1ng7_A Poliovirus 3A-N, genome 61.1 3.5 0.00012 24.8 1.4 16 38-53 30-45 (60)
8 1g2h_A Transcriptional regulat 57.9 4.9 0.00017 22.9 1.6 31 20-51 23-59 (61)
9 2glo_A Brinker CG9653-PA; prot 54.4 7.7 0.00026 21.5 2.0 36 14-49 9-49 (59)
10 2jn6_A Protein CGL2762, transp 49.8 11 0.00039 22.5 2.4 33 18-50 14-48 (97)
11 1whz_A Hypothetical protein; a 49.8 32 0.0011 19.8 4.4 29 37-66 5-36 (70)
12 1v74_A Colicin D; colicin D - 48.7 8.8 0.0003 25.5 1.9 19 14-32 39-62 (107)
13 1ufm_A COP9 complex subunit 4; 45.1 36 0.0012 20.8 4.3 37 28-64 27-76 (84)
14 3me7_A Putative uncharacterize 43.5 49 0.0017 21.3 5.0 49 39-87 103-158 (170)
15 3e7l_A Transcriptional regulat 43.3 16 0.00056 20.6 2.3 35 19-53 20-60 (63)
16 2oa4_A SIR5; structure, struct 41.5 31 0.0011 22.3 3.6 15 35-49 60-74 (101)
17 2rn7_A IS629 ORFA; helix, all 41.3 12 0.0004 22.8 1.5 23 27-49 31-54 (108)
18 1tc3_C Protein (TC3 transposas 40.0 7 0.00024 19.5 0.3 23 27-49 22-45 (51)
19 2nxo_A Hypothetical protein SC 38.8 35 0.0012 23.9 3.9 51 3-53 196-251 (291)
20 3jst_A Putative pterin-4-alpha 38.7 19 0.00066 22.5 2.3 20 37-56 6-26 (97)
21 2drh_A PH0078 protein, 361AA l 37.6 37 0.0013 26.5 4.1 41 14-54 318-361 (361)
22 1ntc_A Protein (nitrogen regul 37.1 23 0.00079 21.4 2.4 32 19-50 52-89 (91)
23 2elh_A CG11849-PA, LD40883P; s 37.1 18 0.00062 21.5 1.9 24 27-50 39-63 (87)
24 1ru0_A DCOH-like protein dcohm 36.5 26 0.00089 22.3 2.7 20 37-56 10-32 (105)
25 3rdw_A Putative arsenate reduc 36.1 38 0.0013 21.6 3.5 38 14-51 16-56 (121)
26 2ebb_A Pterin-4-alpha-carbinol 34.8 23 0.00078 22.5 2.1 20 37-56 3-23 (101)
27 3hxa_A Pterin-4-alpha-carbinol 33.1 23 0.00078 22.6 2.0 20 37-56 8-30 (104)
28 1vpq_A Hypothetical protein TM 32.6 19 0.00064 26.5 1.7 31 36-66 223-255 (273)
29 3f0i_A Arsenate reductase; str 32.5 30 0.001 22.0 2.5 34 19-52 20-56 (119)
30 1umq_A Photosynthetic apparatu 29.3 29 0.001 21.2 1.9 34 17-50 40-79 (81)
31 1pp9_D Cytochrome C-1, cytochr 28.8 40 0.0014 24.9 2.9 31 23-53 39-72 (241)
32 1jko_C HIN recombinase, DNA-in 28.0 30 0.001 17.4 1.6 26 27-52 22-48 (52)
33 2czv_C Ribonuclease P protein 27.9 26 0.00089 22.6 1.6 39 14-52 75-120 (120)
34 2jrt_A Uncharacterized protein 27.5 87 0.003 19.5 4.0 23 27-49 50-73 (95)
35 2v6u_A Pterin-4A-carbinolamine 27.2 26 0.00088 22.3 1.4 21 36-56 8-29 (104)
36 3q7a_B Farnesyltransferase bet 27.2 20 0.00069 29.3 1.1 44 45-88 471-514 (520)
37 3onr_A Protein transport prote 26.7 20 0.00068 22.0 0.8 21 14-34 17-38 (72)
38 1vpy_A Protein (hypothetical p 26.5 22 0.00077 26.3 1.2 31 36-66 228-260 (289)
39 1rw1_A Conserved hypothetical 26.2 57 0.0019 20.2 2.9 34 18-51 15-51 (114)
40 1eto_A FIS, factor for inversi 26.2 43 0.0015 20.9 2.3 33 19-51 59-97 (98)
41 2kok_A Arsenate reductase; bru 24.8 41 0.0014 21.1 2.1 36 17-52 19-57 (120)
42 2cc6_A VNG1446H, dodecin; flav 24.3 22 0.00075 21.6 0.6 21 14-34 15-36 (68)
43 1wlz_A DJBP, CAP-binding prote 24.3 68 0.0023 18.4 2.9 27 27-53 28-57 (105)
44 2vxa_A Dodecin; flavoprotein, 24.3 22 0.00076 21.8 0.6 21 14-34 18-39 (72)
45 2jub_A IPI, internal protein I 23.9 51 0.0017 20.1 2.2 25 50-74 37-64 (76)
46 2ux9_A Dodecin; flavoprotein; 23.8 23 0.00078 21.6 0.6 21 14-34 17-38 (69)
47 3abd_A Mitotic spindle assembl 23.7 90 0.0031 22.4 3.9 62 14-80 30-117 (227)
48 2x7q_A Ca3427, possible thiami 23.5 71 0.0024 22.4 3.3 50 4-53 212-266 (321)
49 1pdn_C Protein (PRD paired); p 23.5 37 0.0013 20.1 1.6 23 27-49 34-57 (128)
50 2yiz_A Dodecin; flavoprotein, 23.4 24 0.00081 21.5 0.6 21 14-34 17-38 (69)
51 3cx5_D Cytochrome C1, heme pro 23.3 44 0.0015 24.8 2.2 30 23-52 42-74 (248)
52 3iwf_A Transcription regulator 22.7 1.2E+02 0.004 19.0 3.9 26 27-52 33-62 (107)
53 2o3f_A Putative HTH-type trans 22.5 1.5E+02 0.005 18.4 4.4 26 27-52 37-66 (111)
54 3gkx_A Putative ARSC family re 22.4 74 0.0025 20.1 3.0 36 18-53 19-57 (120)
55 2lc0_A Putative uncharacterize 22.0 52 0.0018 21.8 2.2 31 41-73 88-119 (132)
56 1sfu_A 34L protein; protein/Z- 21.2 77 0.0026 19.4 2.7 35 15-49 13-53 (75)
57 2lv7_A Calcium-binding protein 20.9 55 0.0019 19.7 2.0 51 28-87 41-99 (100)
58 2fi0_A Conserved domain protei 20.4 46 0.0016 19.9 1.5 27 29-55 49-79 (81)
59 2ljw_A ALR2454 protein; novel 20.3 99 0.0034 20.4 3.3 44 2-46 52-101 (110)
No 1
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=99.92 E-value=1.6e-26 Score=171.43 Aligned_cols=86 Identities=38% Similarity=0.677 Sum_probs=77.2
Q ss_pred hHHhHHHhhh--HHHHHHHHHhhcc--cccccccc------C-CCChHHHHHHHHHhCceEcCCeEEEecCCCCcccccc
Q psy5244 4 VKSLQKACQG--ELQQSVRLSSCGP--STKDTKTK------A-DQTDSTLRLWVKKYGWKELDNGYIFIANQDENIKTKN 72 (90)
Q Consensus 4 ~~~~~~l~~~--gFedsVR~fi~~v--~Tfq~I~~------~-~l~d~~L~~~i~~~gW~~~~~g~i~~~N~dn~iKtk~ 72 (90)
++++++++.. ||+|+||++||++ +|||+|+. | ++++++|++|++++||+.+++|.||++|+||++|+||
T Consensus 121 l~~~~~l~~~i~gf~dsIR~~I~~~i~~aY~sI~~~~la~lLg~~s~~el~~fi~~~GW~vd~~g~I~~~n~e~~~k~~~ 200 (226)
T 1rz4_A 121 LDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKYGWSADESGQIFICSQEESIKPKN 200 (226)
T ss_dssp SCTTCHHHHTSTTHHHHHHHHHHHHHHHHCSEECHHHHHHHTTSCCHHHHHHHHHHHTCEECC--CEECCCHHHHTSCCC
T ss_pred HhcChhHHHHHhHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHcCCCHHHHHHHHHHCCCEECCCccEEeCCCccccccee
Confidence 4455787877 9999999999999 99999997 5 7899999999999999998888889999999999999
Q ss_pred eeeeeccchHHHHhhcc
Q psy5244 73 ITEKIEFENAATIMTSN 89 (90)
Q Consensus 73 I~EkI~fe~~~~ima~s 89 (90)
|+|||+||+++++|+++
T Consensus 201 ~~E~i~~~~~~~~~~~~ 217 (226)
T 1rz4_A 201 IVEKIDFDSVSSIMASS 217 (226)
T ss_dssp SSCCCCHHHHHHHHCC-
T ss_pred eeecccHHHHHHHHHHH
Confidence 99999999999999875
No 2
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=97.51 E-value=7.6e-05 Score=54.32 Aligned_cols=49 Identities=12% Similarity=0.028 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhcc--cccccccc------CCC-ChHHHHHHHHHhCceEcCCeEEEec
Q psy5244 14 ELQQSVRLSSCGP--STKDTKTK------ADQ-TDSTLRLWVKKYGWKELDNGYIFIA 62 (90)
Q Consensus 14 gFedsVR~fi~~v--~Tfq~I~~------~~l-~d~~L~~~i~~~gW~~~~~g~i~~~ 62 (90)
-|.+.||.-++.+ .+|.+|+. |++ +++++..|++++||+..++.++||.
T Consensus 171 ~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~~~gw~i~dg~i~F~~ 228 (229)
T 4b0z_A 171 IVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAEERGWDIRDGVIYFPK 228 (229)
T ss_dssp HHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHHHHTCEEETTEEECC-
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHcCCEEeCCEEecCC
Confidence 6788999999999 89999998 888 5688999999999999866566663
No 3
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.46 E-value=3.8e-05 Score=57.65 Aligned_cols=54 Identities=11% Similarity=0.103 Sum_probs=42.4
Q ss_pred HHHHHHHHHhhcc--cccccccc------CCC-ChHHHHHHHHHhCceEcCCeEEEecCCCCc
Q psy5244 14 ELQQSVRLSSCGP--STKDTKTK------ADQ-TDSTLRLWVKKYGWKELDNGYIFIANQDEN 67 (90)
Q Consensus 14 gFedsVR~fi~~v--~Tfq~I~~------~~l-~d~~L~~~i~~~gW~~~~~g~i~~~N~dn~ 67 (90)
-|-+.||..|+.+ .+|.+|+. |+. +++++.+|++++||+.++++++|+..++..
T Consensus 180 ~l~~~iR~~a~~~i~kaY~~i~l~~~~~~L~F~s~~e~~~F~~~~gW~~~~~~v~F~~~~~~~ 242 (274)
T 4b4t_T 180 ILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALERNWPIVNSKVYFNNQSKEK 242 (274)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCHHHHHHHHTCCSHHHHHHHHHHTTCCCCSSCCCC-------
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHhCCCCHHHHHHHHHHcCCEEeCCEeEECCccccc
Confidence 7888999999999 89999998 777 668899999999999998888887665443
No 4
>2ccq_A P97, peptide N-glycanase homolog; glycoprotein; 1.6A {Homo sapiens} SCOP: d.314.1.1 PDB: 2hpl_A 2hpj_A 2cm0_A
Probab=83.23 E-value=2 Score=27.58 Aligned_cols=36 Identities=11% Similarity=0.070 Sum_probs=30.2
Q ss_pred cccccccc---------CCCChHHHHHHHHHhCceEcCCeEEEecCC
Q psy5244 27 STKDTKTK---------ADQTDSTLRLWVKKYGWKELDNGYIFIANQ 64 (90)
Q Consensus 27 ~Tfq~I~~---------~~l~d~~L~~~i~~~gW~~~~~g~i~~~N~ 64 (90)
--|++|.. +.+.++ .+++...||...+++++||.+.
T Consensus 39 ~KyR~Ir~~N~~f~~~v~~~~G~--~e~L~a~GF~~~~~~l~lp~~~ 83 (99)
T 2ccq_A 39 EKYRSIRIGNTAFSTRLLPVRGA--VECLFEMGFEEGETHLIFPKKA 83 (99)
T ss_dssp GGGGEEETTCHHHHHHTTTSTTH--HHHHHHHTCEECSSEEECCTTS
T ss_pred cccceeecCCHHHHHHhcCCccH--HHHHHHccceeCCCeeecCCCC
Confidence 78999988 777776 5888889999998888888764
No 5
>2d5u_A N-glycanase 1; pngase, hydrolase; NMR {Mus musculus} SCOP: d.314.1.1
Probab=75.21 E-value=3.8 Score=27.45 Aligned_cols=36 Identities=11% Similarity=0.070 Sum_probs=30.0
Q ss_pred cccccccc---------CCCChHHHHHHHHHhCceEcCCeEEEecCC
Q psy5244 27 STKDTKTK---------ADQTDSTLRLWVKKYGWKELDNGYIFIANQ 64 (90)
Q Consensus 27 ~Tfq~I~~---------~~l~d~~L~~~i~~~gW~~~~~g~i~~~N~ 64 (90)
--|++|.. +.+.+. .+++...||.+.++.++||.+.
T Consensus 54 ~KyRkIRl~N~~f~~~V~~~~Ga--~e~L~a~GF~~~~~~lvlp~~~ 98 (124)
T 2d5u_A 54 EKYRSIRIGNTAFSTRLLPVRGA--VECLFEMGFEEGETHLIFPKKA 98 (124)
T ss_dssp GGGSEEECCCHHHHHTTSSSTTH--HHHHHHHTCBCCSSEEECCTTS
T ss_pred ccceeeecCCHHHHHHhcCCccH--HHHHHHcccccCCCeeecCCCC
Confidence 78999988 777777 6778889999998888888763
No 6
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=73.87 E-value=2.5 Score=32.12 Aligned_cols=46 Identities=7% Similarity=-0.006 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhcc--cccc----cccc------CCC-ChHHHHHHHHHhCceEcCCeEE
Q psy5244 14 ELQQSVRLSSCGP--STKD----TKTK------ADQ-TDSTLRLWVKKYGWKELDNGYI 59 (90)
Q Consensus 14 gFedsVR~fi~~v--~Tfq----~I~~------~~l-~d~~L~~~i~~~gW~~~~~g~i 59 (90)
-|-..||..+... .+|. ++.. |+. +++++.+|++.+||...+++.+
T Consensus 201 ~~~~~vR~~AL~~i~kay~~k~~~~pl~~L~~~L~Fds~ee~~~F~~~~gl~~~~~~~~ 259 (316)
T 3t5v_A 201 MHLTDIRFYALRALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFCNYYSIEIINGDAA 259 (316)
T ss_dssp GGHHHHHHHHHHHHHHHSCTTCCCEEHHHHHHHTTCSSHHHHHHHHHHTTCCEETTTEE
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCcCHHHHHHHhCCCCHHHHHHHHHHCCCeEeCCCCc
Confidence 6667799888887 6774 4554 888 4688999999999998753333
No 7
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=61.14 E-value=3.5 Score=24.84 Aligned_cols=16 Identities=25% Similarity=0.549 Sum_probs=13.8
Q ss_pred ChHHHHHHHHHhCceE
Q psy5244 38 TDSTLRLWVKKYGWKE 53 (90)
Q Consensus 38 ~d~~L~~~i~~~gW~~ 53 (90)
+..++.+||+++||..
T Consensus 30 ds~eV~~YC~~kGwIi 45 (60)
T 1ng7_A 30 DSQEVRDYCEKKGWIV 45 (60)
T ss_dssp CCHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHCCcee
Confidence 4578999999999985
No 8
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=57.93 E-value=4.9 Score=22.93 Aligned_cols=31 Identities=13% Similarity=0.025 Sum_probs=24.5
Q ss_pred HHHhhcc--cccccccc----CCCChHHHHHHHHHhCc
Q psy5244 20 RLSSCGP--STKDTKTK----ADQTDSTLRLWVKKYGW 51 (90)
Q Consensus 20 R~fi~~v--~Tfq~I~~----~~l~d~~L~~~i~~~gW 51 (90)
|.+|.++ .+ .++.+ ||++...|..++++||-
T Consensus 23 r~~I~~aL~~~-gn~~~aA~~LGIsr~tL~rklkk~gi 59 (61)
T 1g2h_A 23 AQVLKLFYAEY-PSTRKLAQRLGVSHTAIANKLKQYGI 59 (61)
T ss_dssp HHHHHHHHHHS-CSHHHHHHHTTSCTHHHHHHHHTTTC
T ss_pred HHHHHHHHHHh-CCHHHHHHHhCCCHHHHHHHHHHhCC
Confidence 5666666 44 66666 99999999999999974
No 9
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=54.44 E-value=7.7 Score=21.51 Aligned_cols=36 Identities=8% Similarity=0.153 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhcccc----cccccc-CCCChHHHHHHHHHh
Q psy5244 14 ELQQSVRLSSCGPST----KDTKTK-ADQTDSTLRLWVKKY 49 (90)
Q Consensus 14 gFedsVR~fi~~v~T----fq~I~~-~~l~d~~L~~~i~~~ 49 (90)
.|-..++.++-.-.+ +..+.+ +|++...|..|++++
T Consensus 9 efK~~~~~~~~~g~s~~~~~~~vA~~~gIs~~tl~~W~~~~ 49 (59)
T 2glo_A 9 HFKLQVLESYRNDNDCKGNQRATARKYNIHRRQIQKWLQCE 49 (59)
T ss_dssp HHHHHHHHHHHHCTTTTTCHHHHHHHTTSCHHHHHHHHTTH
T ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHCcCHHHHHHHHHHH
Confidence 455555444322244 666666 999999999999765
No 10
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=49.81 E-value=11 Score=22.47 Aligned_cols=33 Identities=24% Similarity=0.396 Sum_probs=23.5
Q ss_pred HHHHHhhc-ccccccccc-CCCChHHHHHHHHHhC
Q psy5244 18 SVRLSSCG-PSTKDTKTK-ADQTDSTLRLWVKKYG 50 (90)
Q Consensus 18 sVR~fi~~-v~Tfq~I~~-~~l~d~~L~~~i~~~g 50 (90)
.|+.+... -.|+..|.+ +|++...|..|+++|.
T Consensus 14 ~v~~~~~~~g~s~~~ia~~~gIs~~tl~rW~~~~~ 48 (97)
T 2jn6_A 14 AVALYENSDGASLQQIANDLGINRVTLKNWIIKYG 48 (97)
T ss_dssp HHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHHC
T ss_pred HHHHHHHcCCChHHHHHHHHCcCHHHHHHHHHHHh
Confidence 34444333 256666666 9999999999999885
No 11
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=49.76 E-value=32 Score=19.77 Aligned_cols=29 Identities=10% Similarity=0.244 Sum_probs=20.6
Q ss_pred CChHHHHHHHHHhCceEc---CCeEEEecCCCC
Q psy5244 37 QTDSTLRLWVKKYGWKEL---DNGYIFIANQDE 66 (90)
Q Consensus 37 l~d~~L~~~i~~~gW~~~---~~g~i~~~N~dn 66 (90)
++..+|...++++||... |+..+|- +++.
T Consensus 5 ~~~~elik~L~~~G~~~~r~~GSH~~~~-~~~~ 36 (70)
T 1whz_A 5 PRPEEVARKLRRLGFVERMAKGGHRLYT-HPDG 36 (70)
T ss_dssp CCHHHHHHHHHHTTCEEEEEETTEEEEE-CTTS
T ss_pred CCHHHHHHHHHHCCCEEeCCCCCCceEe-cCCC
Confidence 366889999999999964 5556654 3443
No 12
>1v74_A Colicin D; colicin D - IMMD complex, cytotoxicity, transfer RNAse, protein-protein inhibition; HET: 1PE; 2.00A {Escherichia coli} SCOP: d.243.1.1 PDB: 1tfo_A 1tfk_A*
Probab=48.66 E-value=8.8 Score=25.52 Aligned_cols=19 Identities=5% Similarity=0.111 Sum_probs=17.5
Q ss_pred HHHHHHHHHhhcc-----cccccc
Q psy5244 14 ELQQSVRLSSCGP-----STKDTK 32 (90)
Q Consensus 14 gFedsVR~fi~~v-----~Tfq~I 32 (90)
-|||+|+++++.. .||+.=
T Consensus 39 ~fedaI~~Hi~~~~tv~~GTYR~~ 62 (107)
T 1v74_A 39 KFRDAIEEHLSDKDTVEKGTYRRE 62 (107)
T ss_dssp HHHHHHHHHHHCTTCEECCBCTTS
T ss_pred HHHHHHHHHhcCCCeEeeeeeecC
Confidence 7999999999998 899985
No 13
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=45.05 E-value=36 Score=20.77 Aligned_cols=37 Identities=8% Similarity=0.122 Sum_probs=23.9
Q ss_pred ccccccc------CCCChHHHHHHHHHh-------CceEcCCeEEEecCC
Q psy5244 28 TKDTKTK------ADQTDSTLRLWVKKY-------GWKELDNGYIFIANQ 64 (90)
Q Consensus 28 Tfq~I~~------~~l~d~~L~~~i~~~-------gW~~~~~g~i~~~N~ 64 (90)
.|.+|+. ++|+.++++.++.+. |--...+|+|....+
T Consensus 27 ~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~~ 76 (84)
T 1ufm_A 27 LYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETR 76 (84)
T ss_dssp SCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCS
T ss_pred hcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCCc
Confidence 4555555 999999999998653 433445666644433
No 14
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=43.52 E-value=49 Score=21.27 Aligned_cols=49 Identities=6% Similarity=0.093 Sum_probs=31.9
Q ss_pred hHHHHHHHHHhCceEc-------CCeEEEecCCCCcccccceeeeeccchHHHHhh
Q psy5244 39 DSTLRLWVKKYGWKEL-------DNGYIFIANQDENIKTKNITEKIEFENAATIMT 87 (90)
Q Consensus 39 d~~L~~~i~~~gW~~~-------~~g~i~~~N~dn~iKtk~I~EkI~fe~~~~ima 87 (90)
.+++..+++++|+... ....+|+-++++.|...-.-...+.+.+.+.|.
T Consensus 103 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g~~~~~~~i~~~l~ 158 (170)
T 3me7_A 103 SEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYGVNYNYLEFVNALR 158 (170)
T ss_dssp HHHHHHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEEESSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCeEEecCCCccccCceEEEECCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 3567777777665421 122578889999998766666666677766664
No 15
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=43.33 E-value=16 Score=20.57 Aligned_cols=35 Identities=9% Similarity=-0.095 Sum_probs=25.6
Q ss_pred HHHHhhcc--cccccccc----CCCChHHHHHHHHHhCceE
Q psy5244 19 VRLSSCGP--STKDTKTK----ADQTDSTLRLWVKKYGWKE 53 (90)
Q Consensus 19 VR~fi~~v--~Tfq~I~~----~~l~d~~L~~~i~~~gW~~ 53 (90)
=|.+|.++ .+-.++++ +|++-..|..++++||...
T Consensus 20 E~~~i~~aL~~~~gn~~~aA~~LGisr~tL~rklkk~gi~~ 60 (63)
T 3e7l_A 20 EKIFIEEKLREYDYDLKRTAEEIGIDLSNLYRKIKSLNIRV 60 (63)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHTCCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHCcCHHHHHHHHHHhCCCC
Confidence 35556666 33345555 9999999999999999753
No 16
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=41.49 E-value=31 Score=22.26 Aligned_cols=15 Identities=20% Similarity=0.448 Sum_probs=13.8
Q ss_pred CCCChHHHHHHHHHh
Q psy5244 35 ADQTDSTLRLWVKKY 49 (90)
Q Consensus 35 ~~l~d~~L~~~i~~~ 49 (90)
.||+.+++..|+++|
T Consensus 60 y~Is~~ei~~W~r~y 74 (101)
T 2oa4_A 60 YGLSDEEFNSWVSAL 74 (101)
T ss_dssp TCSSHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHH
Confidence 699999999999987
No 17
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=41.33 E-value=12 Score=22.83 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=18.8
Q ss_pred cccccccc-CCCChHHHHHHHHHh
Q psy5244 27 STKDTKTK-ADQTDSTLRLWVKKY 49 (90)
Q Consensus 27 ~Tfq~I~~-~~l~d~~L~~~i~~~ 49 (90)
.|+..|.+ +|++..+|..|++++
T Consensus 31 ~s~~~va~~~gIs~~tl~~W~~~~ 54 (108)
T 2rn7_A 31 ATICSIAPKIGCTPETLRVWVRQH 54 (108)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHHHH
Confidence 35566666 999999999999986
No 18
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=40.00 E-value=7 Score=19.51 Aligned_cols=23 Identities=9% Similarity=0.277 Sum_probs=20.1
Q ss_pred cccccccc-CCCChHHHHHHHHHh
Q psy5244 27 STKDTKTK-ADQTDSTLRLWVKKY 49 (90)
Q Consensus 27 ~Tfq~I~~-~~l~d~~L~~~i~~~ 49 (90)
.|+..|.+ +|++...+..|++++
T Consensus 22 ~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 22 VSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred CCHHHHHHHHCcCHHHHHHHHhhH
Confidence 77888888 999999999999764
No 19
>2nxo_A Hypothetical protein SCO4506; PFAM, DUF178, NYSGXRC, 10093F, PSI-2, structural genomics, protein structure initiative; 2.04A {Streptomyces coelicolor} SCOP: c.94.1.1
Probab=38.77 E-value=35 Score=23.95 Aligned_cols=51 Identities=10% Similarity=0.070 Sum_probs=35.7
Q ss_pred hhHHhHHHhhh---HHHHHHHHHhhcc-cccccccc-CCCChHHHHHHHHHhCceE
Q psy5244 3 IVKSLQKACQG---ELQQSVRLSSCGP-STKDTKTK-ADQTDSTLRLWVKKYGWKE 53 (90)
Q Consensus 3 ~~~~~~~l~~~---gFedsVR~fi~~v-~Tfq~I~~-~~l~d~~L~~~i~~~gW~~ 53 (90)
.++++|+++.. .+.++++....+. -+-+.+.+ .+++.+.++.+++...|..
T Consensus 196 ~~~~~p~~v~~~~~a~~~a~~~~~~~p~ea~~~~a~~~~~~~~~~~~~~~~~~~~~ 251 (291)
T 2nxo_A 196 YAEREPVITRKVHEAFLASRNLSLEEVEKVAEQAARWEAFDEDTLAKYFTTLDFRF 251 (291)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTSSSCHHHHHHHHHHSBCCC
T ss_pred hhhhCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHcCCCHHHHHHHHHhCccCC
Confidence 35677887776 6777776666666 44455555 7899999999997766653
No 20
>3jst_A Putative pterin-4-alpha-carbinolamine dehydratase; lyase, structural genomics, seattle structural genomics CENT infectious disease, ssgcid; 2.10A {Brucella melitensis} SCOP: d.74.1.0
Probab=38.74 E-value=19 Score=22.54 Aligned_cols=20 Identities=25% Similarity=0.616 Sum_probs=17.1
Q ss_pred CChHHHHHHHHHh-CceEcCC
Q psy5244 37 QTDSTLRLWVKKY-GWKELDN 56 (90)
Q Consensus 37 l~d~~L~~~i~~~-gW~~~~~ 56 (90)
|+++++++.++.. ||+..++
T Consensus 6 Ls~~ei~~~L~~l~gW~~~~~ 26 (97)
T 3jst_A 6 LTESEMNEALRALDGWQKVDG 26 (97)
T ss_dssp CCHHHHHHHHHTSTTCEECTT
T ss_pred CCHHHHHHHhhcCCCCeEeCC
Confidence 7889999999987 9998754
No 21
>2drh_A PH0078 protein, 361AA long hypothetical D-aminopeptidase; structural genomics, NPPSFA; 2.10A {Pyrococcus horikoshii}
Probab=37.57 E-value=37 Score=26.50 Aligned_cols=41 Identities=12% Similarity=0.148 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhcc-cccccccc--CCCChHHHHHHHHHhCceEc
Q psy5244 14 ELQQSVRLSSCGP-STKDTKTK--ADQTDSTLRLWVKKYGWKEL 54 (90)
Q Consensus 14 gFedsVR~fi~~v-~Tfq~I~~--~~l~d~~L~~~i~~~gW~~~ 54 (90)
--|++|-+-++.. ...-+-.. --|++++|.+++++|||.++
T Consensus 318 aveeAI~nav~~A~~~~g~~g~~~~al~~~~~~~~~~~~~~~~~ 361 (361)
T 2drh_A 318 AVEEAIINSLLEARTMDGRDNHVRYALPKEELLRIMRRYGRLEE 361 (361)
T ss_dssp HHHHHHHHHHHSCCCEECGGGCEECCCCHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHhccCccCCCCcEEecCCHHHHHHHHHhhCcccC
Confidence 7788888888888 43332233 66777889999999999863
No 22
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=37.12 E-value=23 Score=21.39 Aligned_cols=32 Identities=22% Similarity=0.151 Sum_probs=23.8
Q ss_pred HHHHhhcc--cccccccc----CCCChHHHHHHHHHhC
Q psy5244 19 VRLSSCGP--STKDTKTK----ADQTDSTLRLWVKKYG 50 (90)
Q Consensus 19 VR~fi~~v--~Tfq~I~~----~~l~d~~L~~~i~~~g 50 (90)
=|.+|.++ .+-.++++ ||++-..|..++++||
T Consensus 52 E~~~i~~aL~~~~gn~~~aA~~LGIsr~tL~rklkk~~ 89 (91)
T 1ntc_A 52 ERTLLTTALRHTQGHKQEAARLLGWGAATLTAKLKELG 89 (91)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHCcCHHHHHHHHHHhC
Confidence 35666666 33345555 9999999999999986
No 23
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=37.11 E-value=18 Score=21.47 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=20.5
Q ss_pred cccccccc-CCCChHHHHHHHHHhC
Q psy5244 27 STKDTKTK-ADQTDSTLRLWVKKYG 50 (90)
Q Consensus 27 ~Tfq~I~~-~~l~d~~L~~~i~~~g 50 (90)
.|+..|.+ +|++...|..|++++.
T Consensus 39 ~s~~~iA~~~gIs~sTl~rW~k~~~ 63 (87)
T 2elh_A 39 ESKASVARDIGVPESTLRGWCKNED 63 (87)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 67777777 9999999999998764
No 24
>1ru0_A DCOH-like protein dcohm; alpha and beta structure, lyase; 1.60A {Mus musculus} SCOP: d.74.1.1
Probab=36.47 E-value=26 Score=22.28 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=17.0
Q ss_pred CChHHHHHHHHHh---CceEcCC
Q psy5244 37 QTDSTLRLWVKKY---GWKELDN 56 (90)
Q Consensus 37 l~d~~L~~~i~~~---gW~~~~~ 56 (90)
|+++++++.+++. ||+..++
T Consensus 10 Ls~~ei~~~L~~l~~~gW~~~~~ 32 (105)
T 1ru0_A 10 LTAEERDQLIPGLKAAGWSELSE 32 (105)
T ss_dssp CCHHHHHHHHHHHHHTTCEECSS
T ss_pred CCHHHHHHHHHhCCCCCCeEECC
Confidence 7899999999987 9998644
No 25
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=36.14 E-value=38 Score=21.56 Aligned_cols=38 Identities=8% Similarity=0.023 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhcc-cccccccc--CCCChHHHHHHHHHhCc
Q psy5244 14 ELQQSVRLSSCGP-STKDTKTK--ADQTDSTLRLWVKKYGW 51 (90)
Q Consensus 14 gFedsVR~fi~~v-~Tfq~I~~--~~l~d~~L~~~i~~~gW 51 (90)
++--..+++.-.- +.|+.++. -.++.++|..|+++.||
T Consensus 16 ~~c~ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~l~~~g~ 56 (121)
T 3rdw_A 16 SKSRETLALVEQQGITPQVVLYLETPPSVDKLKELLQQLGF 56 (121)
T ss_dssp HHHHHHHHHHHTTTCCCEEECTTTSCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCCcEEEeeccCCCcHHHHHHHHHhcCC
Confidence 3334455666555 77777766 56788999999999999
No 26
>2ebb_A Pterin-4-alpha-carbinolamine dehydratase; coenzyme biosyntheses, GK1984, structural genomics, NPPSFA; 1.60A {Geobacillus kaustophilus}
Probab=34.79 E-value=23 Score=22.47 Aligned_cols=20 Identities=30% Similarity=0.579 Sum_probs=16.8
Q ss_pred CChHHHHHHHHHh-CceEcCC
Q psy5244 37 QTDSTLRLWVKKY-GWKELDN 56 (90)
Q Consensus 37 l~d~~L~~~i~~~-gW~~~~~ 56 (90)
|++++++..+++. ||+..++
T Consensus 3 Ls~~ei~~~L~~l~gW~~~~~ 23 (101)
T 2ebb_A 3 LTEEEVQALLEKADGWKLADE 23 (101)
T ss_dssp CCHHHHHHHHHTSTTCEEETT
T ss_pred CCHHHHHHHhhcCCCCeECCC
Confidence 7889999999886 9998754
No 27
>3hxa_A Pterin-4-alpha-carbinolamine dehydratase; alpha and beta structure, lyase, nucleus, tetrahydrobiopteri biosynthesis; 1.80A {Rattus norvegicus} SCOP: d.74.1.1 PDB: 1dco_A 1dch_A 1dcp_A* 1f93_A
Probab=33.13 E-value=23 Score=22.56 Aligned_cols=20 Identities=20% Similarity=0.488 Sum_probs=16.9
Q ss_pred CChHHHHHHHHHh---CceEcCC
Q psy5244 37 QTDSTLRLWVKKY---GWKELDN 56 (90)
Q Consensus 37 l~d~~L~~~i~~~---gW~~~~~ 56 (90)
|+++++++.+++. ||+..++
T Consensus 8 Ls~~ei~~~L~~L~~~gW~~~~~ 30 (104)
T 3hxa_A 8 LSAEERDQLLPNLRAVGWNELEG 30 (104)
T ss_dssp CCHHHHHHHSHHHHTTTCEECSS
T ss_pred CCHHHHHHHHhhCCCCCCEEecC
Confidence 7899999999987 9998643
No 28
>1vpq_A Hypothetical protein TM1631; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.1.32.1
Probab=32.62 E-value=19 Score=26.53 Aligned_cols=31 Identities=13% Similarity=0.177 Sum_probs=23.3
Q ss_pred CCChHHHHHHHHHh-CceEcCCe-EEEecCCCC
Q psy5244 36 DQTDSTLRLWVKKY-GWKELDNG-YIFIANQDE 66 (90)
Q Consensus 36 ~l~d~~L~~~i~~~-gW~~~~~g-~i~~~N~dn 66 (90)
+-++++|+.|+++. +|...+.. .+|..|..+
T Consensus 223 ~Y~~~eL~~wa~~i~~~~~~~~~vyv~FnN~~~ 255 (273)
T 1vpq_A 223 LYSEEELKTLFEDVVELSRRVKETYVFFNNCYK 255 (273)
T ss_dssp CCCHHHHHHHHHHHHHHHTTSSEEEEEECCCGG
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence 45889999999986 89876544 667777654
No 29
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=32.49 E-value=30 Score=22.02 Aligned_cols=34 Identities=6% Similarity=-0.031 Sum_probs=25.2
Q ss_pred HHHHhhcc-cccccccc--CCCChHHHHHHHHHhCce
Q psy5244 19 VRLSSCGP-STKDTKTK--ADQTDSTLRLWVKKYGWK 52 (90)
Q Consensus 19 VR~fi~~v-~Tfq~I~~--~~l~d~~L~~~i~~~gW~ 52 (90)
.+++.-.- +.|+.++. -.++.++|..|+++.||.
T Consensus 20 a~~~L~~~gi~~~~~di~~~~~t~~eL~~~l~~~g~~ 56 (119)
T 3f0i_A 20 TLALLENQGIAPQVIKYLETSPSVEELKRLYQQLGLN 56 (119)
T ss_dssp HHHHHHHTTCCCEEECHHHHCCCHHHHHHHHHHHTCS
T ss_pred HHHHHHHcCCceEEEEeccCcCcHHHHHHHHHHcCCc
Confidence 44444444 66766665 668899999999999997
No 30
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=29.25 E-value=29 Score=21.19 Aligned_cols=34 Identities=9% Similarity=-0.073 Sum_probs=24.1
Q ss_pred HHHHHHhhcc--cccccccc----CCCChHHHHHHHHHhC
Q psy5244 17 QSVRLSSCGP--STKDTKTK----ADQTDSTLRLWVKKYG 50 (90)
Q Consensus 17 dsVR~fi~~v--~Tfq~I~~----~~l~d~~L~~~i~~~g 50 (90)
+.=|.+|..+ .+-.++++ ||++...|..++++||
T Consensus 40 ~~Er~~I~~aL~~~~GN~s~AA~~LGISR~TLyrKLkk~g 79 (81)
T 1umq_A 40 RVRWEHIQRIYEMCDRNVSETARRLNMHRRTLQRILAKRS 79 (81)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTSCHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHHHhC
Confidence 3345666665 33335555 9999999999999987
No 31
>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3 f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D* 1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D* 1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 2ybb_D* 1bcc_D* 2bcc_D* 3bcc_D* ...
Probab=28.82 E-value=40 Score=24.89 Aligned_cols=31 Identities=10% Similarity=0.099 Sum_probs=24.5
Q ss_pred hhcc---ccccccccCCCChHHHHHHHHHhCceE
Q psy5244 23 SCGP---STKDTKTKADQTDSTLRLWVKKYGWKE 53 (90)
Q Consensus 23 i~~v---~Tfq~I~~~~l~d~~L~~~i~~~gW~~ 53 (90)
-||. +.|+++.-.+++++++++.++.++...
T Consensus 39 aCHSl~y~~~r~l~~~g~te~evk~~a~~~~v~d 72 (241)
T 1pp9_D 39 SCHSMDYVAYRHLVGVCYTEDEAKALAEEVEVQD 72 (241)
T ss_dssp GTCCCTTCBGGGGBTTTBCHHHHHHHHHTSEEEE
T ss_pred hccCccccccccccccCCCHHHHHHHHHhcccCC
Confidence 5777 778887557899999999998776654
No 32
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=28.00 E-value=30 Score=17.36 Aligned_cols=26 Identities=15% Similarity=-0.003 Sum_probs=20.2
Q ss_pred cccccccc-CCCChHHHHHHHHHhCce
Q psy5244 27 STKDTKTK-ADQTDSTLRLWVKKYGWK 52 (90)
Q Consensus 27 ~Tfq~I~~-~~l~d~~L~~~i~~~gW~ 52 (90)
.|.+.|.+ +|++...+..|++++|.+
T Consensus 22 ~s~~~ia~~lgvs~~Tv~r~l~~~~~~ 48 (52)
T 1jko_C 22 HPRQQLAIIFGIGVSTLYRYFPASSIK 48 (52)
T ss_dssp CCHHHHHHTTSCCHHHHHHHSCTTC--
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHcccc
Confidence 66777777 999999999999887753
No 33
>2czv_C Ribonuclease P protein component 2; RNA binding protein, RNA recognition motif, protein-protein complex, hydrolase; HET: BOG; 2.00A {Pyrococcus horikoshii} SCOP: d.58.59.1
Probab=27.89 E-value=26 Score=22.58 Aligned_cols=39 Identities=28% Similarity=0.417 Sum_probs=25.6
Q ss_pred HHHHHHHHHhhcccccccccc----CCCCh--HHH-HHHHHHhCce
Q psy5244 14 ELQQSVRLSSCGPSTKDTKTK----ADQTD--STL-RLWVKKYGWK 52 (90)
Q Consensus 14 gFedsVR~fi~~v~Tfq~I~~----~~l~d--~~L-~~~i~~~gW~ 52 (90)
++++.+|--++-+..++.... +++++ ... ++|+.++||+
T Consensus 75 ~~~~~v~aaLtli~~i~~~~~~~~vl~vSGTIr~~~~k~l~~~~~~ 120 (120)
T 2czv_C 75 EYVEYLRFALMLVSEFNGKRLIIRTLGVSGTIKRLKRKFLAKYGWK 120 (120)
T ss_dssp GGHHHHHHHHHTCCEETTEECEEEEEEEESSHHHHHHHHTGGGTCC
T ss_pred hhHHHHHHHHHhHhhCCCEEEEEEEeEEChhHHHHHHHHHHHhcCC
Confidence 667777776666655555444 66655 234 4899999996
No 34
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=27.47 E-value=87 Score=19.51 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=17.2
Q ss_pred cccccccc-CCCChHHHHHHHHHh
Q psy5244 27 STKDTKTK-ADQTDSTLRLWVKKY 49 (90)
Q Consensus 27 ~Tfq~I~~-~~l~d~~L~~~i~~~ 49 (90)
.|+..+.+ .||+.++|..|.+.+
T Consensus 50 ~s~~e~arry~Is~s~i~~W~r~~ 73 (95)
T 2jrt_A 50 ITEREALDRYSLSEEEFALWRSAV 73 (95)
T ss_dssp SCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHH
Confidence 34444444 799999999999886
No 35
>2v6u_A Pterin-4A-carbinolamine dehydratase; lyase, enzyme; 1.6A {Toxoplasma gondii} PDB: 2v6s_A 2v6t_A*
Probab=27.21 E-value=26 Score=22.26 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=17.3
Q ss_pred CCChHHHHHHHHHh-CceEcCC
Q psy5244 36 DQTDSTLRLWVKKY-GWKELDN 56 (90)
Q Consensus 36 ~l~d~~L~~~i~~~-gW~~~~~ 56 (90)
-|+++++++.+++. ||+..++
T Consensus 8 ~Ls~~ei~~~L~~l~gW~~~~~ 29 (104)
T 2v6u_A 8 AANSARLLQLHKTVPQWHLTDG 29 (104)
T ss_dssp CTTCHHHHHHHTTSTTSEECGG
T ss_pred CCCHHHHHHHhhcCCCCeEeCC
Confidence 37889999999886 9998754
No 36
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=27.17 E-value=20 Score=29.25 Aligned_cols=44 Identities=23% Similarity=0.410 Sum_probs=36.6
Q ss_pred HHHHhCceEcCCeEEEecCCCCcccccceeeeeccchHHHHhhc
Q psy5244 45 WVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTS 88 (90)
Q Consensus 45 ~i~~~gW~~~~~g~i~~~N~dn~iKtk~I~EkI~fe~~~~ima~ 88 (90)
|..-.+|+++...-+++--++|.+.+.+-.=+|.++.+.++|..
T Consensus 471 ~~~~~~w~~~~~~~~~~g~~~n~~~~~hp~~ni~~~~~~~~~~~ 514 (520)
T 3q7a_B 471 WANALGWIEEEGGEIIVGGKDNRINTTTPVFNILGLRLKPFINY 514 (520)
T ss_dssp HHHHTCEEECTTCCCCTTCGGGCCCCBCTTTCSBHHHHHHHHHH
T ss_pred HhhhhccccccCCceeecCccccccCCCCcccCCHHHHHHHHHH
Confidence 33456999987666777889999999999999999999998853
No 37
>3onr_A Protein transport protein SECE2; calcium dodecin, calcium binding protein, dodecamer, imuuno antigen, metal binding protein; 1.80A {Mycobacterium tuberculosis}
Probab=26.66 E-value=20 Score=22.04 Aligned_cols=21 Identities=10% Similarity=-0.002 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhcc-cccccccc
Q psy5244 14 ELQQSVRLSSCGP-STKDTKTK 34 (90)
Q Consensus 14 gFedsVR~fi~~v-~Tfq~I~~ 34 (90)
+|+|+||.-|.++ -|-++|.-
T Consensus 17 S~edAi~nAi~~AskTl~ni~~ 38 (72)
T 3onr_A 17 SWEQAAAEAVQRARDSVDDIRV 38 (72)
T ss_dssp CHHHHHHHHHHHHHHHCSCCCE
T ss_pred CHHHHHHHHHHHHHhcccCCeE
Confidence 9999999999999 78777765
No 38
>1vpy_A Protein (hypothetical protein EF0366); TIM alpha/beta barrel fold, structural genomics, joint cente structural genomics, JCSG; 2.52A {Enterococcus faecalis} SCOP: c.1.32.1 PDB: 1ztv_A
Probab=26.54 E-value=22 Score=26.27 Aligned_cols=31 Identities=3% Similarity=-0.028 Sum_probs=22.6
Q ss_pred CCChHHHHHHHHHh-CceEcCCe-EEEecCCCC
Q psy5244 36 DQTDSTLRLWVKKY-GWKELDNG-YIFIANQDE 66 (90)
Q Consensus 36 ~l~d~~L~~~i~~~-gW~~~~~g-~i~~~N~dn 66 (90)
+-++++|+.|+++. +|...+.. ++|..|..+
T Consensus 228 ~Y~~~eL~~wa~ri~~~~~~~~~vyv~FnN~~~ 260 (289)
T 1vpy_A 228 HYNTQEIADLSEAVLKMSQEAKEVGVIFNNNSG 260 (289)
T ss_dssp CCCHHHHHHHHHHHHHHHTSCSEEEEEECSBSH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCEEEEEeCCch
Confidence 45779999999985 89765544 567777654
No 39
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=26.23 E-value=57 Score=20.19 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=21.5
Q ss_pred HHHHHhhcc-cccccccc--CCCChHHHHHHHHHhCc
Q psy5244 18 SVRLSSCGP-STKDTKTK--ADQTDSTLRLWVKKYGW 51 (90)
Q Consensus 18 sVR~fi~~v-~Tfq~I~~--~~l~d~~L~~~i~~~gW 51 (90)
..+++.-.- +.|+.++. -.++.++|+.|+++.||
T Consensus 15 kak~~L~~~gi~~~~~di~~~~~~~~~l~~~~~~~g~ 51 (114)
T 1rw1_A 15 KARTWLDEHKVAYDFHDYKAVGIDREHLRRWCAEHGW 51 (114)
T ss_dssp HHHHHHHHTTCCEEEEEHHHHCCCHHHHHHHHHHHCH
T ss_pred HHHHHHHHCCCceEEEeecCCCCCHHHHHHHHHhCCh
Confidence 344444444 56666555 45677788888887786
No 40
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=26.19 E-value=43 Score=20.93 Aligned_cols=33 Identities=27% Similarity=0.161 Sum_probs=23.6
Q ss_pred HHHHhhcc--cccccccc----CCCChHHHHHHHHHhCc
Q psy5244 19 VRLSSCGP--STKDTKTK----ADQTDSTLRLWVKKYGW 51 (90)
Q Consensus 19 VR~fi~~v--~Tfq~I~~----~~l~d~~L~~~i~~~gW 51 (90)
=|.+|.++ .+-.++++ ||++...|..++++||-
T Consensus 59 Er~~I~~aL~~~~gn~~~AA~~LGIsR~TL~rkLkk~gi 97 (98)
T 1eto_A 59 EQPLLDMVMQYTLGNQTRAALMMGINRGTLRKKLKKYGM 97 (98)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHTSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHHHhCC
Confidence 35556555 33335555 99999999999999973
No 41
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}
Probab=24.82 E-value=41 Score=21.08 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=24.5
Q ss_pred HHHHHHhhcc-cccccccc--CCCChHHHHHHHHHhCce
Q psy5244 17 QSVRLSSCGP-STKDTKTK--ADQTDSTLRLWVKKYGWK 52 (90)
Q Consensus 17 dsVR~fi~~v-~Tfq~I~~--~~l~d~~L~~~i~~~gW~ 52 (90)
..++++.-.- +.|+.++. -.++.++|++|+++.||.
T Consensus 19 ~ka~~~L~~~gi~y~~~di~~~~~~~~~l~~~~~~~g~~ 57 (120)
T 2kok_A 19 KKARIWLEDHGIDYTFHDYKKEGLDAETLDRFLKTVPWE 57 (120)
T ss_dssp HHHHHHHHHHTCCEEEEEHHHHCCCHHHHHHHHHHSCGG
T ss_pred HHHHHHHHHcCCcEEEEeeeCCCCCHHHHHHHHHHcChH
Confidence 3445555444 66766665 456778999999999973
No 42
>2cc6_A VNG1446H, dodecin; flavoprotein, flavin, flavin-like ligands; HET: LUM; 1.27A {Halobacterium salinarum} SCOP: d.230.2.1 PDB: 2cc7_A* 2cc8_A* 2cc9_A 2ccb_A* 2ccc_A* 2cif_A* 2cjc_A* 1mog_A* 2vx9_A* 2cie_A* 2vkf_A* 2vkg_A*
Probab=24.33 E-value=22 Score=21.58 Aligned_cols=21 Identities=10% Similarity=-0.073 Sum_probs=18.5
Q ss_pred HHHHHHHHHhhcc-cccccccc
Q psy5244 14 ELQQSVRLSSCGP-STKDTKTK 34 (90)
Q Consensus 14 gFedsVR~fi~~v-~Tfq~I~~ 34 (90)
+|+|+|+.-|.++ -|-++|.-
T Consensus 15 S~edAi~nAi~~AskTl~ni~~ 36 (68)
T 2cc6_A 15 SFTAAADDAIDRAEDTLDNVVW 36 (68)
T ss_dssp CHHHHHHHHHHHHHHHCSCEEE
T ss_pred CHHHHHHHHHHHHHhcccCCeE
Confidence 9999999999999 88777765
No 43
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7
Probab=24.30 E-value=68 Score=18.43 Aligned_cols=27 Identities=4% Similarity=-0.116 Sum_probs=21.3
Q ss_pred cccccccc---CCCChHHHHHHHHHhCceE
Q psy5244 27 STKDTKTK---ADQTDSTLRLWVKKYGWKE 53 (90)
Q Consensus 27 ~Tfq~I~~---~~l~d~~L~~~i~~~gW~~ 53 (90)
..|+.+++ |-++-.+|..+++..|...
T Consensus 28 ~~F~~~D~d~~G~i~~~el~~~l~~~g~~~ 57 (105)
T 1wlz_A 28 QEFENFDTMKTNTISREEFRAICNRRVQIL 57 (105)
T ss_dssp HHHHHHCTTCSSCBCHHHHHHHHHHHTCCC
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHHHhCCCC
Confidence 45777777 7789999999999887653
No 44
>2vxa_A Dodecin; flavoprotein, flavin, riboflavin, lumichrome, archaea; HET: RBF; 2.60A {Halorhodospira halophila}
Probab=24.26 E-value=22 Score=21.80 Aligned_cols=21 Identities=10% Similarity=0.011 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhcc-cccccccc
Q psy5244 14 ELQQSVRLSSCGP-STKDTKTK 34 (90)
Q Consensus 14 gFedsVR~fi~~v-~Tfq~I~~ 34 (90)
+|+|+||.-|.++ -|-++|.-
T Consensus 18 S~edAi~nAi~~AskTl~ni~~ 39 (72)
T 2vxa_A 18 GIEEAVNNAIARAGETLRHLRW 39 (72)
T ss_dssp CHHHHHHHHHHHHHHHCCCEEE
T ss_pred CHHHHHHHHHHHHHhhccCCeE
Confidence 9999999999999 78777765
No 45
>2jub_A IPI, internal protein I; T4 phage, solution, endonuclease inhibitor; NMR {Enterobacteria phage T4}
Probab=23.88 E-value=51 Score=20.07 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=15.3
Q ss_pred CceEcCCe-EE--EecCCCCccccccee
Q psy5244 50 GWKELDNG-YI--FIANQDENIKTKNIT 74 (90)
Q Consensus 50 gW~~~~~g-~i--~~~N~dn~iKtk~I~ 74 (90)
||+...+| .+ -|+-.-...|.|.|.
T Consensus 37 gwsakkdgativispaeetalfkakhis 64 (76)
T 2jub_A 37 GWSAKKDGATIVISPAEETALFKAKHIS 64 (76)
T ss_dssp TCEEEECSSEEEEESSCCCSSSCCEEEE
T ss_pred ccccccCCcEEEEcchHhhhhhhhcccc
Confidence 99987666 22 244444456777764
No 46
>2ux9_A Dodecin; flavoprotein; HET: FMN COA; 1.4A {Thermus thermophilus} SCOP: d.230.2.1 PDB: 2cz8_A* 2deg_A 2deh_A 2dev_A 2v21_A* 2v18_A* 2vyx_A* 2v19_A*
Probab=23.80 E-value=23 Score=21.56 Aligned_cols=21 Identities=10% Similarity=0.039 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhcc-cccccccc
Q psy5244 14 ELQQSVRLSSCGP-STKDTKTK 34 (90)
Q Consensus 14 gFedsVR~fi~~v-~Tfq~I~~ 34 (90)
+|+|+|+.-|.++ -|-++|.-
T Consensus 17 S~edAi~nAi~~AskTl~ni~~ 38 (69)
T 2ux9_A 17 GLEAAIQAALARARKTLRHLDW 38 (69)
T ss_dssp CHHHHHHHHHHHHHHHCCCEEE
T ss_pred CHHHHHHHHHHHHHhcccCCeE
Confidence 9999999999999 77777765
No 47
>3abd_A Mitotic spindle assembly checkpoint protein MAD2B; horma, DNA replication, translesion DNA SYNT cell cycle, cell division, mitosis, DNA damage; HET: DNA; 1.90A {Homo sapiens} PDB: 3abe_C*
Probab=23.73 E-value=90 Score=22.36 Aligned_cols=62 Identities=13% Similarity=0.118 Sum_probs=40.6
Q ss_pred HHHHHHHHHhhcc-------------ccccccccCCC-----ChHHHHHHHHH-----hCceEcCCe---EEEecCCCCc
Q psy5244 14 ELQQSVRLSSCGP-------------STKDTKTKADQ-----TDSTLRLWVKK-----YGWKELDNG---YIFIANQDEN 67 (90)
Q Consensus 14 gFedsVR~fi~~v-------------~Tfq~I~~~~l-----~d~~L~~~i~~-----~gW~~~~~g---~i~~~N~dn~ 67 (90)
+.-+.|..|+... -+|.+..+.|+ .+.+|++||.. ..|-..|.- ++++.|.++
T Consensus 30 ~~a~iv~eFlevainsILY~RgVYP~e~F~~~rky~l~v~~sr~p~l~~YI~~~l~~v~~~L~~g~v~klvlvI~~~~~- 108 (227)
T 3abd_A 30 VVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQYIQDTLHCVKPLLEKNDVEKVVVVILDKEH- 108 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSCGGGEEEEEETTEEEEEECCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECTTS-
T ss_pred HHHHHHHHHHHHHHHHHHhccccCChHHhhHHHhcCCceEEecCHHHHHHHHHHHHHHHHHHHhCceeEEEEEEEcCCC-
Confidence 6667777775433 55666666443 67889999864 267765543 556888766
Q ss_pred ccccceeeeeccc
Q psy5244 68 IKTKNITEKIEFE 80 (90)
Q Consensus 68 iKtk~I~EkI~fe 80 (90)
...|+-.|+
T Consensus 109 ----e~lER~~Fd 117 (227)
T 3abd_A 109 ----RPVEKFVFE 117 (227)
T ss_dssp ----CEEEEEEEE
T ss_pred ----cEEEEEEEE
Confidence 567887776
No 48
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=23.54 E-value=71 Score=22.41 Aligned_cols=50 Identities=8% Similarity=0.189 Sum_probs=33.3
Q ss_pred hHHhHHHhhh---HHHHHHHHHhhcc-cccccccc-CCCChHHHHHHHHHhCceE
Q psy5244 4 VKSLQKACQG---ELQQSVRLSSCGP-STKDTKTK-ADQTDSTLRLWVKKYGWKE 53 (90)
Q Consensus 4 ~~~~~~l~~~---gFedsVR~fi~~v-~Tfq~I~~-~~l~d~~L~~~i~~~gW~~ 53 (90)
++++|+++.. .+.++.+....+. -+.+-+.+ .+++.+.++.|++...|..
T Consensus 212 ~~~~p~~v~~~~~a~~~a~~~~~~~p~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (321)
T 2x7q_A 212 LQAKSDVIKNFIDAVNQGIQYYNEHVDEAIEYISSNLDYSAEDAKEWTKTVEFNS 266 (321)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHSSCCHHHHHHHHTTCCBCT
T ss_pred HhhCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhCcCHHHHHHHHhcCcccc
Confidence 5667777666 6666666666665 43344444 7788888999988766653
No 49
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=23.54 E-value=37 Score=20.13 Aligned_cols=23 Identities=4% Similarity=0.088 Sum_probs=19.9
Q ss_pred cccccccc-CCCChHHHHHHHHHh
Q psy5244 27 STKDTKTK-ADQTDSTLRLWVKKY 49 (90)
Q Consensus 27 ~Tfq~I~~-~~l~d~~L~~~i~~~ 49 (90)
.+...|.+ ++++...+..|++++
T Consensus 34 ~s~~~ia~~lgis~~Tv~~w~~~~ 57 (128)
T 1pdn_C 34 IRPCVISRQLRVSHGCVSKILNRY 57 (128)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 66777777 999999999999886
No 50
>2yiz_A Dodecin; flavoprotein, flavin binding protein, protein-engineering, P storage protein; HET: COA FMN GOL; 1.70A {Mycobacterium tuberculosis} PDB: 3oqt_A 2yj0_A*
Probab=23.38 E-value=24 Score=21.50 Aligned_cols=21 Identities=5% Similarity=-0.043 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhcc-cccccccc
Q psy5244 14 ELQQSVRLSSCGP-STKDTKTK 34 (90)
Q Consensus 14 gFedsVR~fi~~v-~Tfq~I~~ 34 (90)
+|+|+|+.-|.++ -|-++|.-
T Consensus 17 S~edAi~nAi~~AskTl~ni~~ 38 (69)
T 2yiz_A 17 GVDAAIQGGLARAAQTMRALDW 38 (69)
T ss_dssp CHHHHHHHHHHHHHHHCCCEEE
T ss_pred CHHHHHHHHHHHHHhcccCCeE
Confidence 9999999999999 77777765
No 51
>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D* 3cxh_D* 1kb9_D* 1p84_D* 1ezv_D*
Probab=23.31 E-value=44 Score=24.81 Aligned_cols=30 Identities=13% Similarity=0.304 Sum_probs=24.2
Q ss_pred hhcc---ccccccccCCCChHHHHHHHHHhCce
Q psy5244 23 SCGP---STKDTKTKADQTDSTLRLWVKKYGWK 52 (90)
Q Consensus 23 i~~v---~Tfq~I~~~~l~d~~L~~~i~~~gW~ 52 (90)
.||. +.|+++.-.++++++++++.+.+...
T Consensus 42 aCHsl~~v~yr~l~~~g~te~evk~~a~~~~v~ 74 (248)
T 3cx5_D 42 ACHSLDRVAWRTLVGVSHTNEEVRNMAEEFEYD 74 (248)
T ss_dssp GTCCCTTCBGGGGBTTTBCHHHHHHHHTTSEEE
T ss_pred hccCcccccccccccCCCCHHHHHHHHHhhccC
Confidence 5777 78888866889999999999876544
No 52
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=22.70 E-value=1.2e+02 Score=18.98 Aligned_cols=26 Identities=12% Similarity=0.024 Sum_probs=20.5
Q ss_pred cccccccc----CCCChHHHHHHHHHhCce
Q psy5244 27 STKDTKTK----ADQTDSTLRLWVKKYGWK 52 (90)
Q Consensus 27 ~Tfq~I~~----~~l~d~~L~~~i~~~gW~ 52 (90)
+.+.+|.. .++|.+.+-.|+++.|.+
T Consensus 33 ~~~~si~elA~~~~vS~aTv~Rf~kkLGf~ 62 (107)
T 3iwf_A 33 VVNMTSQEIANQLETSSTSIIRLSKKVTPG 62 (107)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHHHHSTT
T ss_pred HHHCCHHHHHHHHCCCHHHHHHHHHHhCCC
Confidence 55555555 899999999999998765
No 53
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=22.45 E-value=1.5e+02 Score=18.43 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=19.5
Q ss_pred cccccccc----CCCChHHHHHHHHHhCce
Q psy5244 27 STKDTKTK----ADQTDSTLRLWVKKYGWK 52 (90)
Q Consensus 27 ~Tfq~I~~----~~l~d~~L~~~i~~~gW~ 52 (90)
+.+-+|.. .+++.+.+-.|+++.|.+
T Consensus 37 ~~~~si~elA~~~~vS~aTv~Rf~kklG~~ 66 (111)
T 2o3f_A 37 AIESTVNEISALANSSDAAVIRLCXSLGLK 66 (111)
T ss_dssp HHTCCHHHHHHHTTCCHHHHHHHHHHTTCS
T ss_pred HHhcCHHHHHHHHCCCHHHHHHHHHHcCCC
Confidence 34444444 899999999999998765
No 54
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=22.41 E-value=74 Score=20.11 Aligned_cols=36 Identities=11% Similarity=0.108 Sum_probs=25.8
Q ss_pred HHHHHhhcc-cccccccc--CCCChHHHHHHHHHhCceE
Q psy5244 18 SVRLSSCGP-STKDTKTK--ADQTDSTLRLWVKKYGWKE 53 (90)
Q Consensus 18 sVR~fi~~v-~Tfq~I~~--~~l~d~~L~~~i~~~gW~~ 53 (90)
..+++.-.- +.|+.++. -.++.++|..|+++.||..
T Consensus 19 ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~l~~~g~~~ 57 (120)
T 3gkx_A 19 KAKKWLIENNIEYTNRLIVDDNPTVEELKAWIPLSGLPV 57 (120)
T ss_dssp HHHHHHHHTTCCCEEEETTTTCCCHHHHHHHHHHHTSCG
T ss_pred HHHHHHHHcCCceEEEecccCcCCHHHHHHHHHHcCCCH
Confidence 345555544 67776666 6678899999999998753
No 55
>2lc0_A Putative uncharacterized protein TB39.8; FHAA, kinase substrate, protein binding; NMR {Mycobacterium tuberculosis}
Probab=22.03 E-value=52 Score=21.81 Aligned_cols=31 Identities=19% Similarity=0.494 Sum_probs=20.0
Q ss_pred HHHHHHHHhCceEcCCeEE-EecCCCCcccccce
Q psy5244 41 TLRLWVKKYGWKELDNGYI-FIANQDENIKTKNI 73 (90)
Q Consensus 41 ~L~~~i~~~gW~~~~~g~i-~~~N~dn~iKtk~I 73 (90)
.|..++.++||+..|.-.| |.. |...++..+
T Consensus 88 ~l~~~a~~qgy~~~G~v~V~f~~--d~~L~~G~~ 119 (132)
T 2lc0_A 88 DLADYIQEQGWQTYGDVVVRFEQ--SSNLHTGQF 119 (132)
T ss_dssp HHHHHHHHHTCBCSSCCEEEEEE--ETTSCTTCE
T ss_pred HHHHHHHHCCCeecCCeEEEEEE--CCCCCCCee
Confidence 3677778899999876533 433 445665544
No 56
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=21.18 E-value=77 Score=19.44 Aligned_cols=35 Identities=9% Similarity=0.002 Sum_probs=29.0
Q ss_pred HHHHHHHHhhcc-----cccccccc-CCCChHHHHHHHHHh
Q psy5244 15 LQQSVRLSSCGP-----STKDTKTK-ADQTDSTLRLWVKKY 49 (90)
Q Consensus 15 FedsVR~fi~~v-----~Tfq~I~~-~~l~d~~L~~~i~~~ 49 (90)
-.+.|+++|.+. +|...|.+ ||++-..++..+-+.
T Consensus 13 ~~~~v~~~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L 53 (75)
T 1sfu_A 13 IFSLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQLYKL 53 (75)
T ss_dssp HHHHHHHHHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHH
Confidence 456799999988 78888988 999999998888543
No 57
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=20.86 E-value=55 Score=19.71 Aligned_cols=51 Identities=14% Similarity=0.208 Sum_probs=33.7
Q ss_pred ccccccc---CCCChHHHHHHHHHhCceEcCCeE--E---EecCCCCcccccceeeeeccchHHHHhh
Q psy5244 28 TKDTKTK---ADQTDSTLRLWVKKYGWKELDNGY--I---FIANQDENIKTKNITEKIEFENAATIMT 87 (90)
Q Consensus 28 Tfq~I~~---~~l~d~~L~~~i~~~gW~~~~~g~--i---~~~N~dn~iKtk~I~EkI~fe~~~~ima 87 (90)
.|+.+++ |-++-.+|+..+++.|.......+ + +=.|.+ -+|+|+.+-.+|+
T Consensus 41 ~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~~D~d~d---------G~I~~~EF~~~m~ 99 (100)
T 2lv7_A 41 AFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGD---------GQVDFEEFVTLLG 99 (100)
T ss_dssp HHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHHHCSSCS---------SSBCHHHHHHHTC
T ss_pred HHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCCC---------CeEeHHHHHHHhC
Confidence 4777777 889999999999999876543321 1 112222 3467887777775
No 58
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=20.35 E-value=46 Score=19.89 Aligned_cols=27 Identities=11% Similarity=0.134 Sum_probs=21.2
Q ss_pred cccccc----CCCChHHHHHHHHHhCceEcC
Q psy5244 29 KDTKTK----ADQTDSTLRLWVKKYGWKELD 55 (90)
Q Consensus 29 fq~I~~----~~l~d~~L~~~i~~~gW~~~~ 55 (90)
+.++.. -|++-++|-+=+++.|....+
T Consensus 49 ~~TL~~aa~~~gid~d~l~~~L~~~g~~~~~ 79 (81)
T 2fi0_A 49 KVSLKQGSKLAGTPMDKIVRTLEANGYEVIG 79 (81)
T ss_dssp HCBHHHHHHHHTCCHHHHHHHHHHTTCEEEC
T ss_pred cCcHHHHHHHcCCCHHHHHHHHHHcCCEeeC
Confidence 566655 788888888888899998753
No 59
>2ljw_A ALR2454 protein; novel fold, structural genomics, northeast structural genomi consortium, NESG, PSI-biology, protein structure initiative function; NMR {Nostoc SP}
Probab=20.35 E-value=99 Score=20.41 Aligned_cols=44 Identities=11% Similarity=0.111 Sum_probs=31.8
Q ss_pred hhhHHhHHHhhh-HHHHHHHHHhhcccccccccc-----CCCChHHHHHHH
Q psy5244 2 DIVKSLQKACQG-ELQQSVRLSSCGPSTKDTKTK-----ADQTDSTLRLWV 46 (90)
Q Consensus 2 ~~~~~~~~l~~~-gFedsVR~fi~~v~Tfq~I~~-----~~l~d~~L~~~i 46 (90)
+.|+...+++.. |=.|.||.|+..+-..-++.+ ++| ++-..+||
T Consensus 52 ~hL~~va~~L~~wG~~~~Vr~~l~~t~~rPRlGkAVsipLdl-g~r~~E~~ 101 (110)
T 2ljw_A 52 EHLDSVANYLHALGGAVQVKTFITQTKERPRLGKAVSIPLDL-GERASEWI 101 (110)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHCCCCCBTTBCEEEEECC-HHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHhCCCCCCCCeEEEEeecC-Cccchhhh
Confidence 347778888888 999999999998833444444 777 44577776
Done!