RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy5244
         (90 letters)



>gnl|CDD|220553 pfam10075, PCI_Csn8, COP9 signalosome, subunit CSN8.  This PCI_Csn8
           domain is conserved from plants to humans. It is a
           signature protein motif found in components of CSN (COP9
           signalosome). It functions as a structural scaffold for
           subunit-subunit interactions within the complex and is a
           key regulator of photomorphogenic development.
          Length = 144

 Score = 31.5 bits (72), Expect = 0.026
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 38  TDSTLRLWVKKYGWKELDNGYIFIANQDENIKTKN 72
           +D  L  + KK GW    +G I   N  E IK KN
Sbjct: 111 SDEELEKFAKKRGWTLDSDGRILPPN-PEEIKPKN 144


>gnl|CDD|171854 PRK13039, PRK13039, superantigen-like protein; Reviewed.
          Length = 232

 Score = 27.0 bits (59), Expect = 1.3
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 43  RLWVKKYGWKE--LDNGYIFIANQDENIKTKNITEKIEFENAATIMTS 88
           +L +KKY   E   D G I I  +DEN    ++++K++FE  A ++ S
Sbjct: 174 KLLIKKYKLYEGSADKGRIVINMKDENKYEIDLSDKLDFERMADVINS 221


>gnl|CDD|235239 PRK04172, pheS, phenylalanyl-tRNA synthetase subunit alpha;
           Provisional.
          Length = 489

 Score = 26.7 bits (60), Expect = 1.7
 Identities = 3/34 (8%), Positives = 13/34 (38%)

Query: 45  WVKKYGWKELDNGYIFIANQDENIKTKNITEKIE 78
            + + GW +++ G + +         +   + + 
Sbjct: 110 NLARKGWAKIEKGKVILKPDAYEDPEEKALKALA 143


>gnl|CDD|201841 pfam01527, HTH_Tnp_1, Transposase.  Transposase proteins are
          necessary for efficient DNA transposition. This family
          consists of various E. coli insertion elements and
          other bacterial transposases some of which are members
          of the IS3 family.
          Length = 75

 Score = 25.0 bits (55), Expect = 3.3
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 16 QQSVRLS-SCGPSTKDTKTKADQTDSTLRLWVKKY 49
           ++V+ S   G S  +   +   + +TL  W KKY
Sbjct: 13 ARAVKESLEPGASVSELAREHGVSPATLYKWRKKY 47


>gnl|CDD|233959 TIGR02639, ClpA, ATP-dependent Clp protease ATP-binding subunit
           clpA.  [Protein fate, Degradation of proteins, peptides,
           and glycopeptides].
          Length = 730

 Score = 25.0 bits (55), Expect = 7.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)

Query: 70  TKNITEKIEFENAATIMTSNV 90
           T N   K +F N   IMTSN 
Sbjct: 582 TDNNGRKADFRNVILIMTSNA 602


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.311    0.125    0.355 

Gapped
Lambda     K      H
   0.267   0.0748    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,003,693
Number of extensions: 294126
Number of successful extensions: 208
Number of sequences better than 10.0: 1
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 11
Length of query: 90
Length of database: 10,937,602
Length adjustment: 58
Effective length of query: 32
Effective length of database: 8,365,070
Effective search space: 267682240
Effective search space used: 267682240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.2 bits)