RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5244
         (90 letters)



>d1rz4a1 a.4.5.53 (A:132-216) Eukaryotic translation initiation
          factor 3 subunit 12, eIF3k, C-terminal domain {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 85

 Score = 74.3 bits (183), Expect = 5e-20
 Identities = 26/50 (52%), Positives = 39/50 (78%)

Query: 39 DSTLRLWVKKYGWKELDNGYIFIANQDENIKTKNITEKIEFENAATIMTS 88
          DS L++W+ KYGW   ++G IFI +Q+E+IK KNI EKI+F++ ++IM S
Sbjct: 36 DSQLKVWMSKYGWSADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMAS 85


>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762
          {Corynebacterium glutamicum [TaxId: 1718]}
          Length = 89

 Score = 22.5 bits (48), Expect = 7.4
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 16 QQSVRL--SSCGPSTKDTKTKADQTDSTLRLWVKKYG 50
          + +V L  +S G S +           TL+ W+ KYG
Sbjct: 12 RDAVALYENSDGASLQQIANDLGINRVTLKNWIIKYG 48


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.125    0.355 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 293,095
Number of extensions: 10618
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 4
Length of query: 90
Length of database: 2,407,596
Length adjustment: 54
Effective length of query: 36
Effective length of database: 1,666,176
Effective search space: 59982336
Effective search space used: 59982336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.1 bits)