BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5246
(119 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9H0U6|RM18_HUMAN 39S ribosomal protein L18, mitochondrial OS=Homo sapiens GN=MRPL18
PE=1 SV=1
Length = 180
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 50/92 (54%), Positives = 64/92 (69%)
Query: 24 NKNPRNLERLRIARKPQGYHLDRLGREYWHTLYFTTTKKHITGQIVHNNGNVVVSASTNE 83
N+NPRNLE L +ARK +G+ RE+WH L T+ H+ + H NG VVVSAST E
Sbjct: 50 NRNPRNLELLSVARKERGWRTVFPSREFWHRLRVIRTQHHVEALVEHQNGKVVVSASTRE 109
Query: 84 WALKKHLYNTNDICAYSNLARVLAQRCLETGI 115
WA+KKHLY+T ++ A ++ RVLAQRCLE GI
Sbjct: 110 WAIKKHLYSTRNVVACESIGRVLAQRCLEAGI 141
>sp|Q3ZBR7|RM18_BOVIN 39S ribosomal protein L18, mitochondrial OS=Bos taurus GN=MRPL18
PE=2 SV=1
Length = 180
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/92 (54%), Positives = 63/92 (68%)
Query: 24 NKNPRNLERLRIARKPQGYHLDRLGREYWHTLYFTTTKKHITGQIVHNNGNVVVSASTNE 83
N+NPRNLE L +ARK +G+ RE+WH L ++ HI + H NG VVVSAST E
Sbjct: 50 NRNPRNLELLAVARKERGWGTVWPSREFWHRLRVIRSQHHIEALVEHRNGQVVVSASTRE 109
Query: 84 WALKKHLYNTNDICAYSNLARVLAQRCLETGI 115
WA+KKHLY+T + A ++ RVLAQRCLE GI
Sbjct: 110 WAIKKHLYSTKSVVACESVGRVLAQRCLEAGI 141
>sp|Q9CQL5|RM18_MOUSE 39S ribosomal protein L18, mitochondrial OS=Mus musculus GN=Mrpl18
PE=2 SV=1
Length = 180
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/92 (54%), Positives = 64/92 (69%)
Query: 24 NKNPRNLERLRIARKPQGYHLDRLGREYWHTLYFTTTKKHITGQIVHNNGNVVVSASTNE 83
N+NPRNLE L +ARK +G+ RE+WH L T+ H+ + H NG VVVSAST E
Sbjct: 50 NRNPRNLELLGVARKERGWATVWPNREFWHRLRVVKTQHHVEAFVEHLNGQVVVSASTRE 109
Query: 84 WALKKHLYNTNDICAYSNLARVLAQRCLETGI 115
WA+KKHLY+T ++ A ++ RVLAQRCLE GI
Sbjct: 110 WAIKKHLYSTRNVVACESIGRVLAQRCLEAGI 141
>sp|P34378|YLM4_CAEEL Uncharacterized protein D2007.4 OS=Caenorhabditis elegans
GN=D2007.4 PE=4 SV=1
Length = 170
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 24 NKNPRNLERLRIARKPQGYHL--DRLGREYWHTLYFTTTKKHITGQIVHNNGNVVVSAST 81
N+NPRN E + GY DR R Y + + K H G++VH VV+SAST
Sbjct: 11 NRNPRNNELMGRQAPNTGYQFEKDRAARSYIYKVELVEGKSHREGRLVHYQDGVVISAST 70
Query: 82 NEWALKKHLYNTNDICAYSNLARVLAQRCLETGI 115
E ++ LY+ D A N+ RVLA RCL++GI
Sbjct: 71 KEPSIASQLYSKTDTSAALNIGRVLALRCLQSGI 104
>sp|A9KJH8|RL18_CLOPH 50S ribosomal protein L18 OS=Clostridium phytofermentans (strain
ATCC 700394 / DSM 18823 / ISDg) GN=rplR PE=3 SV=1
Length = 122
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 63 HITGQIVHNN-GNVVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEI 118
H+ QI+ + GN +VSAST E +K L TND+ A + L V+A++ LE GI+ +
Sbjct: 39 HMYAQIIDDTVGNTLVSASTLEKGVKAELEKTNDVAAAAMLGTVIAKKALEKGITTV 95
>sp|C6DG58|RL18_PECCP 50S ribosomal protein L18 OS=Pectobacterium carotovorum subsp.
carotovorum (strain PC1) GN=rplR PE=3 SV=1
Length = 117
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 60 TKKHITGQIVHNNGN-VVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEI 118
T +HI Q++ NG+ V+V+AST E A+ + L +T + A S + + +A+R LE GI ++
Sbjct: 31 TPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKSTGNKDAASAIGKAIAERALEKGIKDV 90
Query: 119 T 119
+
Sbjct: 91 S 91
>sp|A1RED0|RL18_SHESW 50S ribosomal protein L18 OS=Shewanella sp. (strain W3-18-1)
GN=rplR PE=3 SV=1
Length = 116
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 37/60 (61%)
Query: 60 TKKHITGQIVHNNGNVVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEIT 119
T +HI Q+++ VV +AST E A+K+ L +T ++ A + + +A+R +E G++ +
Sbjct: 31 TPRHIYAQVINPEAQVVAAASTVEKAVKEQLKSTGNVDAAKAVGKFVAERAIEKGVTSVA 90
>sp|Q0I089|RL18_SHESR 50S ribosomal protein L18 OS=Shewanella sp. (strain MR-7) GN=rplR
PE=3 SV=1
Length = 116
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 37/60 (61%)
Query: 60 TKKHITGQIVHNNGNVVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEIT 119
T +HI Q+++ VV +AST E A+K+ L +T ++ A + + +A+R +E G++ +
Sbjct: 31 TPRHIYAQVINPEAQVVAAASTVEKAVKEQLKSTGNVDAAKAVGKFVAERAIEKGVTSVA 90
>sp|Q0HNS1|RL18_SHESM 50S ribosomal protein L18 OS=Shewanella sp. (strain MR-4) GN=rplR
PE=3 SV=1
Length = 116
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 37/60 (61%)
Query: 60 TKKHITGQIVHNNGNVVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEIT 119
T +HI Q+++ VV +AST E A+K+ L +T ++ A + + +A+R +E G++ +
Sbjct: 31 TPRHIYAQVINPEAQVVAAASTVEKAVKEQLKSTGNVDAAKAVGKFVAERAIEKGVTSVA 90
>sp|A4YBW7|RL18_SHEPC 50S ribosomal protein L18 OS=Shewanella putrefaciens (strain CN-32
/ ATCC BAA-453) GN=rplR PE=3 SV=1
Length = 116
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 37/60 (61%)
Query: 60 TKKHITGQIVHNNGNVVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEIT 119
T +HI Q+++ VV +AST E A+K+ L +T ++ A + + +A+R +E G++ +
Sbjct: 31 TPRHIYAQVINPEAQVVAAASTVEKAVKEQLKSTGNVDAAKAVGKFVAERAIEKGVTSVA 90
>sp|A1S234|RL18_SHEAM 50S ribosomal protein L18 OS=Shewanella amazonensis (strain ATCC
BAA-1098 / SB2B) GN=rplR PE=3 SV=1
Length = 116
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 24 NKNPRNLERLRIARKPQGYHLDRLGREYWHTLYFTTTKKHITGQIVHNNGNVVVSASTNE 83
+K L R ARK + LG H L T +HI Q+++ VV +AST E
Sbjct: 2 DKKSSRLRRATRARK----KIQELG---VHRLVVHRTPRHIYAQVINPEAQVVAAASTVE 54
Query: 84 WALKKHLYNTNDICAYSNLARVLAQRCLETGISEIT 119
++K+ L +T ++ A + + +A+R +E G++ +
Sbjct: 55 KSIKEALKSTGNVDAAKAVGKAIAERAVEKGVTVVA 90
>sp|A0KRP0|RL18_SHESA 50S ribosomal protein L18 OS=Shewanella sp. (strain ANA-3) GN=rplR
PE=3 SV=1
Length = 116
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 37/60 (61%)
Query: 60 TKKHITGQIVHNNGNVVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEIT 119
T +HI Q+++ VV +AST E A+K+ L +T ++ A + + +A+R +E G++ +
Sbjct: 31 TPRHIYAQVINPEAQVVAAASTVEKAVKEQLKSTGNVDAAKAVGKFIAERAIEKGVTTVA 90
>sp|P52863|RL18_VIBPR 50S ribosomal protein L18 OS=Vibrio proteolyticus GN=rplR PE=3 SV=1
Length = 117
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 60 TKKHITGQIVHNNGN-VVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEI 118
T +H+ Q++ +NG+ V+ +AST E A+++ + NT ++ A + + +A+R LE G+ +
Sbjct: 31 TPRHVYAQVIASNGSEVIAAASTVEKAIREQVKNTGNVDAAKAVGKAIAERALEKGVETV 90
Query: 119 T 119
Sbjct: 91 A 91
>sp|Q8EK53|RL18_SHEON 50S ribosomal protein L18 OS=Shewanella oneidensis (strain MR-1)
GN=rplR PE=3 SV=1
Length = 116
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 37/60 (61%)
Query: 60 TKKHITGQIVHNNGNVVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEIT 119
T +HI Q+++ VV +AST E A+K+ L +T ++ A + + +A+R +E G++ +
Sbjct: 31 TPRHIYAQVINPEAQVVAAASTVEKAVKEQLKSTGNVDAAKAVGKFVAERAIEKGVTNVA 90
>sp|B8GV42|RL18_THISH 50S ribosomal protein L18 OS=Thioalkalivibrio sp. (strain HL-EbGR7)
GN=rplR PE=3 SV=1
Length = 117
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 53 HTLYFTTTKKHITGQIVHNNGN-VVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCL 111
H L T +HI Q++ NG+ VV +AST E L K L T ++ A + +V+A+R
Sbjct: 24 HRLCVHRTPRHIYAQVIAPNGSEVVAAASTVEVELAKDLKGTGNVDAAVAIGKVIAERAK 83
Query: 112 ETGISEIT 119
G+SE+
Sbjct: 84 AKGVSEVA 91
>sp|A7HM36|RL18_FERNB 50S ribosomal protein L18 OS=Fervidobacterium nodosum (strain ATCC
35602 / DSM 5306 / Rt17-B1) GN=rplR PE=3 SV=1
Length = 122
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 60 TKKHITGQIVHN-NGNVVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEI 118
++KH+ QI+ + G +V+AST E A+K+ L T +I A + +++A+R L GI E+
Sbjct: 36 SEKHMYAQIIDDTKGITLVAASTVEKAMKEKLQKTWNITAAKEVGKLIAERALAKGIKEV 95
Query: 119 T 119
Sbjct: 96 V 96
>sp|B4F1K0|RL18_PROMH 50S ribosomal protein L18 OS=Proteus mirabilis (strain HI4320)
GN=rplR PE=3 SV=1
Length = 117
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 60 TKKHITGQIVHNNGN-VVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEI 118
T +HI Q++ NG+ +V+AST E A+ + L NT + A + + +++A+R LE GI +
Sbjct: 31 TPRHIYAQVIAPNGSETLVAASTTEKAIIEQLKNTGNKEAAAVVGKIVAERALEKGIKSV 90
Query: 119 T 119
+
Sbjct: 91 S 91
>sp|Q6CZY6|RL18_ERWCT 50S ribosomal protein L18 OS=Erwinia carotovora subsp. atroseptica
(strain SCRI 1043 / ATCC BAA-672) GN=rplR PE=3 SV=1
Length = 117
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 60 TKKHITGQIVHNNGN-VVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEI 118
T +HI Q++ NG+ V+V+AST E A+ + L +T + A + + + +A+R LE GI +
Sbjct: 31 TPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKSTGNKDAATAIGKAIAERALEKGIKNV 90
Query: 119 T 119
+
Sbjct: 91 S 91
>sp|C4ZBT4|RL18_EUBR3 50S ribosomal protein L18 OS=Eubacterium rectale (strain ATCC 33656
/ VPI 0990) GN=rplR PE=3 SV=1
Length = 122
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 63 HITGQIVHNN-GNVVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEI 118
H+ QI+ + GN +VSAST + +K L TN++ A + L V+A++ L+ GIS +
Sbjct: 39 HMYAQIIDDTVGNTLVSASTLDKDIKAELEKTNNVDAAAKLGTVIAKKALDKGISTV 95
>sp|B5FG25|RL18_VIBFM 50S ribosomal protein L18 OS=Vibrio fischeri (strain MJ11) GN=rplR
PE=3 SV=1
Length = 117
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 60 TKKHITGQIVHNNGN-VVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEI 118
T +H Q++ NG+ V+ +AST E A+++ L NT++ A + +++A+R +E GI+ +
Sbjct: 31 TPRHTYAQVIAPNGSEVIAAASTVEKAIREQLGNTSNKAAAEAIGKLIAERAIEKGITNV 90
Query: 119 T 119
Sbjct: 91 A 91
>sp|A9KWB8|RL18_SHEB9 50S ribosomal protein L18 OS=Shewanella baltica (strain OS195)
GN=rplR PE=3 SV=1
Length = 116
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 37/60 (61%)
Query: 60 TKKHITGQIVHNNGNVVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEIT 119
T +HI Q+++ V+ +AST E A+K+ L +T ++ A + + +A+R +E G++ +
Sbjct: 31 TPRHIYAQVINPEAQVLAAASTVEKAVKELLKSTGNVDAAKAVGKFVAERAIEKGVTSVA 90
>sp|A6WHU4|RL18_SHEB8 50S ribosomal protein L18 OS=Shewanella baltica (strain OS185)
GN=rplR PE=3 SV=1
Length = 116
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 37/60 (61%)
Query: 60 TKKHITGQIVHNNGNVVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEIT 119
T +HI Q+++ V+ +AST E A+K+ L +T ++ A + + +A+R +E G++ +
Sbjct: 31 TPRHIYAQVINPEAQVLAAASTVEKAVKELLKSTGNVDAAKAVGKFVAERAIEKGVTSVA 90
>sp|A3DA56|RL18_SHEB5 50S ribosomal protein L18 OS=Shewanella baltica (strain OS155 /
ATCC BAA-1091) GN=rplR PE=3 SV=1
Length = 116
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 37/60 (61%)
Query: 60 TKKHITGQIVHNNGNVVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEIT 119
T +HI Q+++ V+ +AST E A+K+ L +T ++ A + + +A+R +E G++ +
Sbjct: 31 TPRHIYAQVINPEAQVLAAASTVEKAVKELLKSTGNVDAAKAVGKFVAERAIEKGVTSVA 90
>sp|B8EBI9|RL18_SHEB2 50S ribosomal protein L18 OS=Shewanella baltica (strain OS223)
GN=rplR PE=3 SV=1
Length = 116
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 37/60 (61%)
Query: 60 TKKHITGQIVHNNGNVVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEIT 119
T +HI Q+++ V+ +AST E A+K+ L +T ++ A + + +A+R +E G++ +
Sbjct: 31 TPRHIYAQVINPEAQVLAAASTVEKAVKELLKSTGNVDAAKAVGKFVAERAIEKGVTSVA 90
>sp|Q2NQN8|RL18_SODGM 50S ribosomal protein L18 OS=Sodalis glossinidius (strain
morsitans) GN=rplR PE=3 SV=1
Length = 117
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 60 TKKHITGQIVHNNGN-VVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEI 118
T +HI Q++ NG+ V+V+AST E A+ + L T + A + + + +A R LE GI ++
Sbjct: 31 TPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKGTGNKDAAAAVGKTIAVRALEKGIKDV 90
Query: 119 T 119
+
Sbjct: 91 S 91
>sp|Q3J8T0|RL18_NITOC 50S ribosomal protein L18 OS=Nitrosococcus oceani (strain ATCC
19707 / NCIMB 11848) GN=rplR PE=3 SV=1
Length = 117
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 60 TKKHITGQIVH-NNGNVVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEI 118
T KHI QI+ +GNVV SAST E LK+ L NT + A + + +A+R GI+++
Sbjct: 31 TPKHIYVQIIKPADGNVVASASTVESMLKQQLKNTGNKEAAITVGKTIAERAKAKGIAKV 90
>sp|Q089N8|RL18_SHEFN 50S ribosomal protein L18 OS=Shewanella frigidimarina (strain NCIMB
400) GN=rplR PE=3 SV=1
Length = 116
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 37/60 (61%)
Query: 60 TKKHITGQIVHNNGNVVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEIT 119
T +HI Q+++ V+ AST E A+K+ L +T ++ A + +++A+R +E G++ +
Sbjct: 31 TPRHIYAQVINPEAQVLAVASTVEKAVKELLKSTGNVDAAKAVGKIVAERAIEKGVATVA 90
>sp|A4IZR8|RL18_FRATW 50S ribosomal protein L18 OS=Francisella tularensis subsp.
tularensis (strain WY96-3418) GN=rplR PE=3 SV=1
Length = 117
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 49 REYWHT-LYFTTTKKHITGQIVHNNGN-VVVSASTNEWALKKHLYNTNDICAYSNLARVL 106
RE HT L T +H+ Q++ +G+ V+V+AST E +K T ++ + + + ++
Sbjct: 19 RELGHTRLCVYRTPRHVYAQVISGDGSTVLVAASTVEKDVKAKCKYTGNVESAAIVGEII 78
Query: 107 AQRCLETGISEI 118
A RC E GIS++
Sbjct: 79 ADRCKEKGISQV 90
>sp|Q5NHV2|RL18_FRATT 50S ribosomal protein L18 OS=Francisella tularensis subsp.
tularensis (strain SCHU S4 / Schu 4) GN=rplR PE=3 SV=1
Length = 117
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 49 REYWHT-LYFTTTKKHITGQIVHNNGN-VVVSASTNEWALKKHLYNTNDICAYSNLARVL 106
RE HT L T +H+ Q++ +G+ V+V+AST E +K T ++ + + + ++
Sbjct: 19 RELGHTRLCVYRTPRHVYAQVISGDGSTVLVAASTVEKDVKAKCKYTGNVESAAIVGEII 78
Query: 107 AQRCLETGISEI 118
A RC E GIS++
Sbjct: 79 ADRCKEKGISQV 90
>sp|Q0BNR1|RL18_FRATO 50S ribosomal protein L18 OS=Francisella tularensis subsp.
holarctica (strain OSU18) GN=rplR PE=3 SV=1
Length = 117
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 49 REYWHT-LYFTTTKKHITGQIVHNNGN-VVVSASTNEWALKKHLYNTNDICAYSNLARVL 106
RE HT L T +H+ Q++ +G+ V+V+AST E +K T ++ + + + ++
Sbjct: 19 RELGHTRLCVYRTPRHVYAQVISGDGSTVLVAASTVEKDVKAKCKYTGNVESAAIVGEII 78
Query: 107 AQRCLETGISEI 118
A RC E GIS++
Sbjct: 79 ADRCKEKGISQV 90
>sp|B2SDW9|RL18_FRATM 50S ribosomal protein L18 OS=Francisella tularensis subsp.
mediasiatica (strain FSC147) GN=rplR PE=3 SV=1
Length = 117
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 49 REYWHT-LYFTTTKKHITGQIVHNNGN-VVVSASTNEWALKKHLYNTNDICAYSNLARVL 106
RE HT L T +H+ Q++ +G+ V+V+AST E +K T ++ + + + ++
Sbjct: 19 RELGHTRLCVYRTPRHVYAQVISGDGSTVLVAASTVEKDVKAKCKYTGNVESAAIVGEII 78
Query: 107 AQRCLETGISEI 118
A RC E GIS++
Sbjct: 79 ADRCKEKGISQV 90
>sp|Q2A5F4|RL18_FRATH 50S ribosomal protein L18 OS=Francisella tularensis subsp.
holarctica (strain LVS) GN=rplR PE=3 SV=1
Length = 117
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 49 REYWHT-LYFTTTKKHITGQIVHNNGN-VVVSASTNEWALKKHLYNTNDICAYSNLARVL 106
RE HT L T +H+ Q++ +G+ V+V+AST E +K T ++ + + + ++
Sbjct: 19 RELGHTRLCVYRTPRHVYAQVISGDGSTVLVAASTVEKDVKAKCKYTGNVESAAIVGEII 78
Query: 107 AQRCLETGISEI 118
A RC E GIS++
Sbjct: 79 ADRCKEKGISQV 90
>sp|A7N9U1|RL18_FRATF 50S ribosomal protein L18 OS=Francisella tularensis subsp.
holarctica (strain FTNF002-00 / FTA) GN=rplR PE=3 SV=1
Length = 117
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 49 REYWHT-LYFTTTKKHITGQIVHNNGN-VVVSASTNEWALKKHLYNTNDICAYSNLARVL 106
RE HT L T +H+ Q++ +G+ V+V+AST E +K T ++ + + + ++
Sbjct: 19 RELGHTRLCVYRTPRHVYAQVISGDGSTVLVAASTVEKDVKAKCKYTGNVESAAIVGEII 78
Query: 107 AQRCLETGISEI 118
A RC E GIS++
Sbjct: 79 ADRCKEKGISQV 90
>sp|Q14JA4|RL18_FRAT1 50S ribosomal protein L18 OS=Francisella tularensis subsp.
tularensis (strain FSC 198) GN=rplR PE=3 SV=1
Length = 117
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 49 REYWHT-LYFTTTKKHITGQIVHNNGN-VVVSASTNEWALKKHLYNTNDICAYSNLARVL 106
RE HT L T +H+ Q++ +G+ V+V+AST E +K T ++ + + + ++
Sbjct: 19 RELGHTRLCVYRTPRHVYAQVISGDGSTVLVAASTVEKDVKAKCKYTGNVESAAIVGEII 78
Query: 107 AQRCLETGISEI 118
A RC E GIS++
Sbjct: 79 ADRCKEKGISQV 90
>sp|A0Q4J9|RL18_FRATN 50S ribosomal protein L18 OS=Francisella tularensis subsp. novicida
(strain U112) GN=rplR PE=3 SV=1
Length = 117
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 49 REYWHT-LYFTTTKKHITGQIVHNNGN-VVVSASTNEWALKKHLYNTNDICAYSNLARVL 106
RE HT L T +H+ Q++ +G+ V+V+AST E +K T ++ + + + ++
Sbjct: 19 RELGHTRLCVYRTPRHVYAQVISGDGSTVLVAASTVEKDVKAKCKYTGNVESAAIVGEII 78
Query: 107 AQRCLETGISEI 118
A RC E GIS++
Sbjct: 79 ANRCKEKGISQV 90
>sp|A1WVA6|RL18_HALHL 50S ribosomal protein L18 OS=Halorhodospira halophila (strain DSM
244 / SL1) GN=rplR PE=3 SV=1
Length = 117
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 32 RLRIARKPQGYHLDRLGREYWHTLYFTTTKKHITGQIVHNNG-NVVVSASTNEWALKKHL 90
R+R ARK +G D +G + L T +HI Q+ +G + +AST E AL++
Sbjct: 7 RMRRARKSRGRIRD-VG---AYRLSVHRTPRHIYAQVQQPDGATTLAAASTVEPALRQRS 62
Query: 91 YNTNDICAYSNLARVLAQRCLETGISEIT 119
T ++ A + R++A+R GI ++
Sbjct: 63 EGTGNVSAAQEVGRLIAERAKAAGIEQVA 91
>sp|A3Q998|RL18_SHELP 50S ribosomal protein L18 OS=Shewanella loihica (strain ATCC
BAA-1088 / PV-4) GN=rplR PE=3 SV=1
Length = 116
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 34/59 (57%)
Query: 60 TKKHITGQIVHNNGNVVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEI 118
T +H Q++ N VV +AST E A+ + L T ++ A + + +A+R +E G++ +
Sbjct: 31 TPRHTYAQVIDANAQVVAAASTAEKAVSEQLKYTGNVEAAKAVGKTIAERAIEKGVTVV 89
>sp|Q5E898|RL18_VIBF1 50S ribosomal protein L18 OS=Vibrio fischeri (strain ATCC 700601 /
ES114) GN=rplR PE=3 SV=1
Length = 117
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 60 TKKHITGQIVHNNGN-VVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEI 118
T +H Q++ NG+ V+ +AST E A+++ L +T++ A + +++A+R +E GI+ +
Sbjct: 31 TPRHTYAQVIAPNGSEVIAAASTVEKAIREQLGSTSNKAAAEAIGKLIAERAIEKGITNV 90
Query: 119 T 119
Sbjct: 91 A 91
>sp|B6EPU1|RL18_ALISL 50S ribosomal protein L18 OS=Aliivibrio salmonicida (strain
LFI1238) GN=rplR PE=3 SV=1
Length = 117
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 60 TKKHITGQIVHNNGN-VVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEI 118
T +H Q++ NG+ V+ +AST E A+++ + NT++ A + +++A+R +E GI+ +
Sbjct: 31 TPRHTYAQVIAPNGSEVIAAASTVEKAIREQVGNTSNKAAAVAIGKLIAERAIEKGITNV 90
Query: 119 T 119
Sbjct: 91 A 91
>sp|B1JIX7|RL18_YERPY 50S ribosomal protein L18 OS=Yersinia pseudotuberculosis serotype
O:3 (strain YPIII) GN=rplR PE=3 SV=1
Length = 117
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 60 TKKHITGQIVHNNGN-VVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEI 118
T +HI Q++ NG+ ++V+AST E A+ + L + A + + + +A+R LE GI+++
Sbjct: 31 TPRHIYAQVIAPNGSEILVAASTVEKAINEQLKYAGNKDAAAAVGKTIAERALEKGITKV 90
Query: 119 T 119
+
Sbjct: 91 S 91
>sp|Q664T7|RL18_YERPS 50S ribosomal protein L18 OS=Yersinia pseudotuberculosis serotype I
(strain IP32953) GN=rplR PE=3 SV=1
Length = 117
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 60 TKKHITGQIVHNNGN-VVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEI 118
T +HI Q++ NG+ ++V+AST E A+ + L + A + + + +A+R LE GI+++
Sbjct: 31 TPRHIYAQVIAPNGSEILVAASTVEKAINEQLKYAGNKDAAAAVGKTIAERALEKGITKV 90
Query: 119 T 119
+
Sbjct: 91 S 91
>sp|A4TH08|RL18_YERPP 50S ribosomal protein L18 OS=Yersinia pestis (strain Pestoides F)
GN=rplR PE=3 SV=1
Length = 117
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 60 TKKHITGQIVHNNGN-VVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEI 118
T +HI Q++ NG+ ++V+AST E A+ + L + A + + + +A+R LE GI+++
Sbjct: 31 TPRHIYAQVIAPNGSEILVAASTVEKAINEQLKYAGNKDAAAAVGKTIAERALEKGITKV 90
Query: 119 T 119
+
Sbjct: 91 S 91
>sp|Q1CCW0|RL18_YERPN 50S ribosomal protein L18 OS=Yersinia pestis bv. Antiqua (strain
Nepal516) GN=rplR PE=3 SV=1
Length = 117
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 60 TKKHITGQIVHNNGN-VVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEI 118
T +HI Q++ NG+ ++V+AST E A+ + L + A + + + +A+R LE GI+++
Sbjct: 31 TPRHIYAQVIAPNGSEILVAASTVEKAINEQLKYAGNKDAAAAVGKTIAERALEKGITKV 90
Query: 119 T 119
+
Sbjct: 91 S 91
>sp|A9R911|RL18_YERPG 50S ribosomal protein L18 OS=Yersinia pestis bv. Antiqua (strain
Angola) GN=rplR PE=3 SV=1
Length = 117
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 60 TKKHITGQIVHNNGN-VVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEI 118
T +HI Q++ NG+ ++V+AST E A+ + L + A + + + +A+R LE GI+++
Sbjct: 31 TPRHIYAQVIAPNGSEILVAASTVEKAINEQLKYAGNKDAAAAVGKTIAERALEKGITKV 90
Query: 119 T 119
+
Sbjct: 91 S 91
>sp|Q8ZJ96|RL18_YERPE 50S ribosomal protein L18 OS=Yersinia pestis GN=rplR PE=3 SV=1
Length = 117
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 60 TKKHITGQIVHNNGN-VVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEI 118
T +HI Q++ NG+ ++V+AST E A+ + L + A + + + +A+R LE GI+++
Sbjct: 31 TPRHIYAQVIAPNGSEILVAASTVEKAINEQLKYAGNKDAAAAVGKTIAERALEKGITKV 90
Query: 119 T 119
+
Sbjct: 91 S 91
>sp|B2K521|RL18_YERPB 50S ribosomal protein L18 OS=Yersinia pseudotuberculosis serotype
IB (strain PB1/+) GN=rplR PE=3 SV=1
Length = 117
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 60 TKKHITGQIVHNNGN-VVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEI 118
T +HI Q++ NG+ ++V+AST E A+ + L + A + + + +A+R LE GI+++
Sbjct: 31 TPRHIYAQVIAPNGSEILVAASTVEKAINEQLKYAGNKDAAAAVGKTIAERALEKGITKV 90
Query: 119 T 119
+
Sbjct: 91 S 91
>sp|Q1C2W3|RL18_YERPA 50S ribosomal protein L18 OS=Yersinia pestis bv. Antiqua (strain
Antiqua) GN=rplR PE=3 SV=1
Length = 117
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 60 TKKHITGQIVHNNGN-VVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEI 118
T +HI Q++ NG+ ++V+AST E A+ + L + A + + + +A+R LE GI+++
Sbjct: 31 TPRHIYAQVIAPNGSEILVAASTVEKAINEQLKYAGNKDAAAAVGKTIAERALEKGITKV 90
Query: 119 T 119
+
Sbjct: 91 S 91
>sp|A7FNL8|RL18_YERP3 50S ribosomal protein L18 OS=Yersinia pseudotuberculosis serotype
O:1b (strain IP 31758) GN=rplR PE=3 SV=1
Length = 117
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 60 TKKHITGQIVHNNGN-VVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEI 118
T +HI Q++ NG+ ++V+AST E A+ + L + A + + + +A+R LE GI+++
Sbjct: 31 TPRHIYAQVIAPNGSEILVAASTVEKAINEQLKYAGNKDAAAAVGKTIAERALEKGITKV 90
Query: 119 T 119
+
Sbjct: 91 S 91
>sp|Q12SU3|RL18_SHEDO 50S ribosomal protein L18 OS=Shewanella denitrificans (strain OS217
/ ATCC BAA-1090 / DSM 15013) GN=rplR PE=3 SV=1
Length = 116
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 35/57 (61%)
Query: 60 TKKHITGQIVHNNGNVVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGIS 116
T +HI Q++ V+ +AST E +K+ L +T ++ A + +++A+R +E G++
Sbjct: 31 TPRHIYAQVISPEAQVLAAASTVEKTVKELLKSTGNVDAAKAVGKIVAERAIEKGVA 87
>sp|A9BG02|RL18_PETMO 50S ribosomal protein L18 OS=Petrotoga mobilis (strain DSM 10674 /
SJ95) GN=rplR PE=3 SV=1
Length = 122
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 60 TKKHITGQIVHN-NGNVVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEI 118
++KHI QI+ + G + SAST + LK+ L T D A + +++A++ E GI+EI
Sbjct: 36 SQKHIYAQIIDDTKGVTLASASTTQKQLKEKLEKTWDENAAKEVGKLIAEKAKEKGITEI 95
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.131 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,393,658
Number of Sequences: 539616
Number of extensions: 1641366
Number of successful extensions: 3644
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 104
Number of HSP's that attempted gapping in prelim test: 3387
Number of HSP's gapped (non-prelim): 254
length of query: 119
length of database: 191,569,459
effective HSP length: 86
effective length of query: 33
effective length of database: 145,162,483
effective search space: 4790361939
effective search space used: 4790361939
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)