Query psy5246
Match_columns 119
No_of_seqs 131 out of 1146
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 21:27:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5246.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5246hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbo_Q Ribosomal protein L18; 100.0 2.9E-34 9.8E-39 215.3 5.4 99 18-119 33-135 (161)
2 1ovy_A 50S ribosomal protein L 100.0 3.5E-32 1.2E-36 195.7 7.4 93 22-119 1-94 (120)
3 3r8s_O 50S ribosomal protein L 100.0 5.1E-32 1.7E-36 193.7 7.8 88 28-119 2-90 (116)
4 3v2d_S 50S ribosomal protein L 100.0 1.1E-30 3.7E-35 186.0 6.3 83 28-119 3-86 (112)
5 2zjr_L 50S ribosomal protein L 99.9 2.7E-29 9.1E-34 179.3 -1.5 82 29-119 3-88 (114)
6 1vq8_N 50S ribosomal protein L 99.9 2.7E-22 9.4E-27 153.3 9.7 69 47-119 30-102 (187)
7 3j21_O 50S ribosomal protein L 99.9 4E-23 1.4E-27 159.7 1.8 86 28-119 14-103 (203)
8 4a17_M RPL5, 60S ribosomal pro 99.8 2.4E-19 8.1E-24 144.9 10.2 66 53-118 49-125 (301)
9 3u5e_D 60S ribosomal protein L 99.8 5.3E-19 1.8E-23 142.7 11.1 66 53-118 49-125 (297)
10 2zkr_n 60S ribosomal protein L 99.7 1.6E-17 5.6E-22 134.0 9.8 61 53-113 49-112 (297)
11 3iz5_Q 60S ribosomal protein L 99.6 1.1E-15 3.9E-20 123.5 5.5 63 53-118 53-126 (304)
12 2vqe_K 30S ribosomal protein S 96.9 0.0031 1.1E-07 45.2 7.3 64 53-118 17-80 (129)
13 3r8n_K 30S ribosomal protein S 96.6 0.0094 3.2E-07 42.0 7.5 64 53-118 7-70 (117)
14 3j20_M 30S ribosomal protein S 96.5 0.018 6.3E-07 41.6 8.7 66 51-118 13-79 (137)
15 3bbn_K Ribosomal protein S11; 96.4 0.0037 1.3E-07 45.5 4.4 64 53-118 30-93 (140)
16 2xzm_K RPS14E; ribosome, trans 96.1 0.016 5.6E-07 42.5 6.5 66 52-118 28-93 (151)
17 3u5c_O RP59A, 40S ribosomal pr 95.1 0.018 6E-07 41.7 3.6 66 52-118 14-79 (137)
18 2zko_A NS1, NS1A, non-structur 33.5 33 0.0011 21.9 2.7 20 93-112 54-73 (73)
19 2hc5_A ORF 99, hypothetical pr 29.5 79 0.0027 21.6 4.4 24 53-76 58-81 (117)
20 3b09_A Peptidyl-prolyl CIS-tra 23.5 68 0.0023 20.7 3.0 21 97-117 31-51 (88)
21 1gtk_A Porphobilinogen deamina 22.4 1.1E+02 0.0038 24.4 4.6 41 63-114 258-298 (313)
22 1v8d_A Hypothetical protein (T 22.1 1.5E+02 0.0051 22.9 5.1 43 73-116 63-106 (235)
No 1
>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=2.9e-34 Score=215.30 Aligned_cols=99 Identities=20% Similarity=0.251 Sum_probs=87.9
Q ss_pred ccceeec-cCchhHHHHHHhccccccccccCCCcceeEEEEEecCCcEEEEEEECCCCe-EEEEEcchHHhhhccc--CC
Q psy5246 18 AGKCVHN-KNPRNLERLRIARKPQGYHLDRLGREYWHTLYFTTTKKHITGQIVHNNGNV-VVSASTNEWALKKHLY--NT 93 (119)
Q Consensus 18 ~~~~~~n-rn~r~~~R~rr~~rir~k~~~~~~r~~~pRL~V~rSnkhiyAQlIdd~~g~-L~sAST~e~~ik~~l~--~~ 93 (119)
+.|++.+ .|||+++|++|++|+|+++.|++++ |||+||+||+|||||||||++|+ |+||||+|+++++.++ ++
T Consensus 33 ~~~~~~~~~~~k~~~R~rR~~RiR~ki~gt~~r---PRL~V~rSnkhIyAQvIdd~~g~tLasASTlek~lk~~l~~g~~ 109 (161)
T 3bbo_Q 33 SFPIIEAKAKTRREDRTARHVRIRKKVEGTPER---PRLCVFRSNKHLYVQVIDDSKMHTLASASTMQKSISEELDYSSS 109 (161)
T ss_dssp -------CCCCCCCCGGGTSCCSCSGGGGSSSC---CCCEEEECSSCEEEEEECCTTSCEEEEEEHHHHHHHHCCTTCCS
T ss_pred ceeeEeeccCchHHHHHHHHHHHHHhhccCCCC---CEEEEEecCCeEEEEEEECCCCEEEEEEeCCcHHHHhhccccCC
Confidence 7778888 9999999999999999999999999 99999999999999999999997 9999999999987665 68
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCceeC
Q psy5246 94 NDICAYSNLARVLAQRCLETGISEIT 119 (119)
Q Consensus 94 ~n~~aA~~vG~~lAera~~~GI~~V~ 119 (119)
+|+++|+.||++||+||+++||++|+
T Consensus 110 ~n~~AA~~VG~liAeRA~e~GI~~Vv 135 (161)
T 3bbo_Q 110 PTIEVAKKVGEVIASACLEKGITKVA 135 (161)
T ss_dssp SSHHHHHHHHHHSSSHHHHTSSCCCC
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 99999999999999999999999985
No 2
>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1
Probab=99.97 E-value=3.5e-32 Score=195.68 Aligned_cols=93 Identities=29% Similarity=0.350 Sum_probs=66.4
Q ss_pred eeccCchhHHHHHHhccccccccccCCCcceeEEEEEecCCcEEEEEEECCCCe-EEEEEcchHHhhhcccCCCCHHHHH
Q psy5246 22 VHNKNPRNLERLRIARKPQGYHLDRLGREYWHTLYFTTTKKHITGQIVHNNGNV-VVSASTNEWALKKHLYNTNDICAYS 100 (119)
Q Consensus 22 ~~nrn~r~~~R~rr~~rir~k~~~~~~r~~~pRL~V~rSnkhiyAQlIdd~~g~-L~sAST~e~~ik~~l~~~~n~~aA~ 100 (119)
|.|+..|++.|.+|++|+|+++.|++++ |||+||+||+|||||||||++|+ |+||||+|++++ +.+++|++||+
T Consensus 1 ~~~~~~~~~~r~~r~~R~r~ki~gt~~r---pRL~V~rSnkhIyAQiidd~~~~tl~sAsT~e~~~~--~~~~~n~~AA~ 75 (120)
T 1ovy_A 1 MITKVDRNAVRKKRHARIRKKIFGTTER---PRLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEFG--LDSTNNIEAAK 75 (120)
T ss_dssp -----------------------CCSSC---CSEEEEEETTEEEEEEECCSSCCCEEEESTTSTTTC--SSCTTSHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHhcCCCCC---CEEEEEEeCCeEEEEEEEcCCCEEEEEEecCchhhC--cCCCCcHHHHH
Confidence 3566667888999999999999999999 99999999999999999999997 999999999986 56789999999
Q ss_pred HHHHHHHHHHHhcCCceeC
Q psy5246 101 NLARVLAQRCLETGISEIT 119 (119)
Q Consensus 101 ~vG~~lAera~~~GI~~V~ 119 (119)
.||++||+||+++||++|+
T Consensus 76 ~vG~llA~Ral~~GI~~vv 94 (120)
T 1ovy_A 76 KVGELVAKRALEKGIKQVV 94 (120)
T ss_dssp HHHHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHHHHCCCCEEE
Confidence 9999999999999999875
No 3
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ...
Probab=99.97 E-value=5.1e-32 Score=193.66 Aligned_cols=88 Identities=31% Similarity=0.446 Sum_probs=83.0
Q ss_pred hhHHHHHHhccccccccccCCCcceeEEEEEecCCcEEEEEEECCCCe-EEEEEcchHHhhhcccCCCCHHHHHHHHHHH
Q psy5246 28 RNLERLRIARKPQGYHLDRLGREYWHTLYFTTTKKHITGQIVHNNGNV-VVSASTNEWALKKHLYNTNDICAYSNLARVL 106 (119)
Q Consensus 28 r~~~R~rr~~rir~k~~~~~~r~~~pRL~V~rSnkhiyAQlIdd~~g~-L~sAST~e~~ik~~l~~~~n~~aA~~vG~~l 106 (119)
|+..|++|+.|+|.++.+ +++ |||+||+||+|||||||||++|+ |+||||+|+++++++.+++|++||+.||++|
T Consensus 2 ~~~~r~~r~~r~R~ki~~-~~r---pRL~V~rSnkhIyAQiidd~~g~tlasAST~e~~~~~~~~~~~n~~AA~~vG~ll 77 (116)
T 3r8s_O 2 KKSARIRRATRARRKLQE-LGA---TRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAV 77 (116)
T ss_dssp HHHHHHHHHHHHHHHHHT-TTC---CEEEEEECSSCEEEEEECTTSSCEEEECCSSSHHHHTTCSCSSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcc-CCC---CEEEEEEeCCEEEEEEEEcCCCeEEEEEeeCchhhccccCCCCCHHHHHHHHHHH
Confidence 567899999999999999 777 99999999999999999999996 9999999999999888899999999999999
Q ss_pred HHHHHhcCCceeC
Q psy5246 107 AQRCLETGISEIT 119 (119)
Q Consensus 107 Aera~~~GI~~V~ 119 (119)
|+||+++||++|+
T Consensus 78 A~Ral~~GI~~vv 90 (116)
T 3r8s_O 78 AERALEKGIKDVS 90 (116)
T ss_dssp HHHHHTTTCCCCE
T ss_pred HHHHHHCCCCEEE
Confidence 9999999999874
No 4
>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ...
Probab=99.96 E-value=1.1e-30 Score=186.05 Aligned_cols=83 Identities=28% Similarity=0.274 Sum_probs=77.6
Q ss_pred hhHHHHHHhccccccccccCCCcceeEEEEEecCCcEEEEEEECCCCe-EEEEEcchHHhhhcccCCCCHHHHHHHHHHH
Q psy5246 28 RNLERLRIARKPQGYHLDRLGREYWHTLYFTTTKKHITGQIVHNNGNV-VVSASTNEWALKKHLYNTNDICAYSNLARVL 106 (119)
Q Consensus 28 r~~~R~rr~~rir~k~~~~~~r~~~pRL~V~rSnkhiyAQlIdd~~g~-L~sAST~e~~ik~~l~~~~n~~aA~~vG~~l 106 (119)
|++.|++|+.|+|+++.|++ + |||+||+||+|||||||||++|+ |+||||+|++++ ++|+++|+.||++|
T Consensus 3 ~~~~r~~r~~r~r~ki~gt~-r---pRL~V~rSnkhiyAQiidd~~~~tlasAsT~e~~~k-----~~n~~AA~~vG~ll 73 (112)
T 3v2d_S 3 RLTAYERRKFRVRNRIKRTG-R---LRLSVFRSLKHIYAQIIDDEKGVTLVSASSLALKLK-----GNKTEVARQVGRAL 73 (112)
T ss_dssp CCCHHHHHHHHHHHHHHHTC-C---CEEEEEECSSCEEEEEEETTTTEEEEEEETTTTTCC-----CCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCC-C---CEEEEEEeCCeEEEEEEecCCCeEEEEEEecchhcc-----CCCHHHHHHHHHHH
Confidence 45678899999999999998 8 99999999999999999999997 999999999874 68999999999999
Q ss_pred HHHHHhcCCceeC
Q psy5246 107 AQRCLETGISEIT 119 (119)
Q Consensus 107 Aera~~~GI~~V~ 119 (119)
|+||+++||++|+
T Consensus 74 A~ra~~~GI~~vv 86 (112)
T 3v2d_S 74 AEKALALGIKQVA 86 (112)
T ss_dssp HHHHHTTTCCBCE
T ss_pred HHHHHHCCCCEEE
Confidence 9999999999874
No 5
>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P
Probab=99.94 E-value=2.7e-29 Score=179.32 Aligned_cols=82 Identities=22% Similarity=0.284 Sum_probs=72.6
Q ss_pred hHHHHHHhcccccccccc---CCCcceeEEEEEecCCcEEEEEEECCCCe-EEEEEcchHHhhhcccCCCCHHHHHHHHH
Q psy5246 29 NLERLRIARKPQGYHLDR---LGREYWHTLYFTTTKKHITGQIVHNNGNV-VVSASTNEWALKKHLYNTNDICAYSNLAR 104 (119)
Q Consensus 29 ~~~R~rr~~rir~k~~~~---~~r~~~pRL~V~rSnkhiyAQlIdd~~g~-L~sAST~e~~ik~~l~~~~n~~aA~~vG~ 104 (119)
++.|.+|+.|+|+++.|+ +++ |||+||+||+|||||||||++|+ |+||||+| + ++++|+++|+.||+
T Consensus 3 ~~~r~~r~~r~r~ki~gt~~~~~r---pRL~V~rSnkhIyAQiidd~~~~tl~sAST~e--l----~~~~n~~AA~~vG~ 73 (114)
T 2zjr_L 3 TATTIRRKLRTRRKVRTTTAASGR---LRLSVYRSSKHIYAQIIDDSRGQTLAAASSAA--L----KSGNKTDTAAAVGK 73 (114)
T ss_dssp -----CHHHHHHHHHHSCSTTTCS---EEECCCTTSSCCCCCEEETTTTEECCCCCSCS--C----CTTCSSSSHHHHHH
T ss_pred hHHHHHHHHHHHhhhccccCCCCC---CEEEEEEeCCeEEEEEEEcCCCEEEEEEEchH--h----cCCCCHHHHHHHHH
Confidence 457889999999999999 898 99999999999999999999997 99999999 4 35789999999999
Q ss_pred HHHHHHHhcCCceeC
Q psy5246 105 VLAQRCLETGISEIT 119 (119)
Q Consensus 105 ~lAera~~~GI~~V~ 119 (119)
+||+||+++||++|+
T Consensus 74 llA~Ral~~GI~~vv 88 (114)
T 2zjr_L 74 ALAAAAAEKGIKQVV 88 (114)
T ss_dssp HHHHHHHTTCCCCCE
T ss_pred HHHHHHHHCCCCEEE
Confidence 999999999999874
No 6
>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ...
Probab=99.87 E-value=2.7e-22 Score=153.35 Aligned_cols=69 Identities=23% Similarity=0.292 Sum_probs=62.7
Q ss_pred CCCcceeEEEEEecCCcEEEEEE--ECCCCe-EEEEEcchHHhhhcc-cCCCCHHHHHHHHHHHHHHHHhcCCceeC
Q psy5246 47 LGREYWHTLYFTTTKKHITGQIV--HNNGNV-VVSASTNEWALKKHL-YNTNDICAYSNLARVLAQRCLETGISEIT 119 (119)
Q Consensus 47 ~~r~~~pRL~V~rSnkhiyAQlI--dd~~g~-L~sAST~e~~ik~~l-~~~~n~~aA~~vG~~lAera~~~GI~~V~ 119 (119)
+++ |||+||+||+||||||| ||++|+ |+||||+|++ +..+ .+++|++||+.||++||+||+++||++|+
T Consensus 30 ~~r---pRL~V~rSnkhIyAQII~~dd~~~~tlasAsT~e~~-k~~~k~~~~N~~AA~~vG~llA~Ral~kGI~~vv 102 (187)
T 1vq8_N 30 SGK---PRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLA-EYGWEAPTGNMPSAYLTGLLAGLRAQEAGVEEAV 102 (187)
T ss_dssp TCS---CEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGG-GGTCCSCSSSHHHHHHHHHHHHHHHHHTTCCBCE
T ss_pred cCC---CEEEEEEeCCcEEEEEEEecCCCCEEEEEEEccchh-ccccccCCCcHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 567 99999999999999999 999997 9999999998 5444 46799999999999999999999999874
No 7
>3j21_O 50S ribosomal protein L18P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.86 E-value=4e-23 Score=159.66 Aligned_cols=86 Identities=19% Similarity=0.182 Sum_probs=69.3
Q ss_pred hhHHHHHHhccccccccccCCCcceeEEEEEecCCcEEEEEEE--CCCCe-EEEEEcchHHh-hhcccCCCCHHHHHHHH
Q psy5246 28 RNLERLRIARKPQGYHLDRLGREYWHTLYFTTTKKHITGQIVH--NNGNV-VVSASTNEWAL-KKHLYNTNDICAYSNLA 103 (119)
Q Consensus 28 r~~~R~rr~~rir~k~~~~~~r~~~pRL~V~rSnkhiyAQlId--d~~g~-L~sAST~e~~i-k~~l~~~~n~~aA~~vG 103 (119)
|.+.+..++.|.|..+. ++ |||+||+||+|||||||| |++|+ |+||||.|+++ .++..+++|++||+.||
T Consensus 14 Rregkt~y~~R~rl~~~---~k---pRL~V~rSnkhIyAQIId~d~~g~~tLasAST~El~lk~g~~~~~~N~~AA~~vG 87 (203)
T 3j21_O 14 RREGKTNYRKRLKLLKS---GK---PRLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLG 87 (203)
T ss_dssp HHHTCCCHHHHHHHHTT---CC---CEEEEEECSSCEEEEEEECCTTSCEEEEEECSTTTSSSSSCCSCTTSHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHhc---CC---CEEEEEEeCCeEEEEEEEecCCCCeEEEEEEccchhhhhcccCCCCcHHHHHHHH
Confidence 33434445555554343 36 999999999999999998 77777 99999999986 34446789999999999
Q ss_pred HHHHHHHHhcCCceeC
Q psy5246 104 RVLAQRCLETGISEIT 119 (119)
Q Consensus 104 ~~lAera~~~GI~~V~ 119 (119)
++||+||+++||++|+
T Consensus 88 ~llA~Ral~kGI~~vv 103 (203)
T 3j21_O 88 LLIGYKAKQAGIEEAI 103 (203)
T ss_dssp HHSSSSTTSSCCCCCE
T ss_pred HHHHHHHHhCCCCEEE
Confidence 9999999999999874
No 8
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_M 4a1c_M 4a1e_M
Probab=99.79 E-value=2.4e-19 Score=144.93 Aligned_cols=66 Identities=21% Similarity=0.162 Sum_probs=59.3
Q ss_pred eEEEEEecCCcEEEEEEEC--CCCe-EEEEEcchHHhhhcccCCCCHHHHHHHHHHHHHHHHhc--------CCcee
Q psy5246 53 HTLYFTTTKKHITGQIVHN--NGNV-VVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLET--------GISEI 118 (119)
Q Consensus 53 pRL~V~rSnkhiyAQlIdd--~~g~-L~sAST~e~~ik~~l~~~~n~~aA~~vG~~lAera~~~--------GI~~V 118 (119)
|||+||+||+||||||||| ++++ ||||||+|++..++..+++|++||+.||.+||+||+++ |+++|
T Consensus 49 pRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS~El~~~g~k~~~~N~~AAy~vG~LiAeRAl~k~~~d~~y~G~~e~ 125 (301)
T 4a17_M 49 YRLVARATNTRIIAQIVYATLKCDRVLCAADSYELKRFGVSTGLASYAAAYATGLLLARRLLKQIGLDTVYAGQTKV 125 (301)
T ss_dssp EEEEEEECSSCEEEEEEEECSSCEEEEEEEETTHHHHTTCCSCTTSHHHHHHHHHHHHHHHHHHHTCTTTCCCCSSC
T ss_pred ceEEEEEcCCeEEEEEeecCCCCCEEEEEEeeccchhccccCCCCcHHHHHHHHHHHHHHHHHhcCCcccccCcccc
Confidence 9999999999999999998 4556 99999999987665456889999999999999999999 88864
No 9
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 4b6a_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E
Probab=99.79 E-value=5.3e-19 Score=142.74 Aligned_cols=66 Identities=24% Similarity=0.298 Sum_probs=59.2
Q ss_pred eEEEEEecCCcEEEEEEEC--CCCe-EEEEEcchHHhhhcccCCCCHHHHHHHHHHHHHHHHhc--------CCcee
Q psy5246 53 HTLYFTTTKKHITGQIVHN--NGNV-VVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLET--------GISEI 118 (119)
Q Consensus 53 pRL~V~rSnkhiyAQlIdd--~~g~-L~sAST~e~~ik~~l~~~~n~~aA~~vG~~lAera~~~--------GI~~V 118 (119)
|||+||+||+||||||||| ++++ ||||||+|++..++...++|++||+.||.+||+||+++ |+++|
T Consensus 49 pRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS~El~k~g~k~~~~N~~AAy~vG~LiAeRAl~k~~ld~~y~G~~e~ 125 (297)
T 3u5e_D 49 YRLVVRFTNKDIICQIISSTITGDVVLAAAYSHELPRYGITHGLTNWAAAYATGLLIARRTLQKLGLDETYKGVEEV 125 (297)
T ss_dssp CEEEEEEETTEEEEEEEECCTTCCEEEEEEEGGGGGGGTCCSCTTSHHHHHHHHHHHHHHHHHHTSTTSSCCCCSSC
T ss_pred ceEEEEEcCCeEEEEEeecCCCCCEEEEEEeecchhhcccCCCCCcHHHHHHHHHHHHHHHHHhhCCcccccCcccc
Confidence 9999999999999999998 5666 99999999986654446789999999999999999999 88774
No 10
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.72 E-value=1.6e-17 Score=134.02 Aligned_cols=61 Identities=20% Similarity=0.175 Sum_probs=54.1
Q ss_pred eEEEEEecCCcEEEEEEECC--CCe-EEEEEcchHHhhhcccCCCCHHHHHHHHHHHHHHHHhc
Q psy5246 53 HTLYFTTTKKHITGQIVHNN--GNV-VVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLET 113 (119)
Q Consensus 53 pRL~V~rSnkhiyAQlIdd~--~g~-L~sAST~e~~ik~~l~~~~n~~aA~~vG~~lAera~~~ 113 (119)
|||+|++||+|||||||||. +++ ||||||.|+.-.++..+++|.+||+.+|.+||+||+++
T Consensus 49 pRLvVrrSNk~I~aQII~~~~~gd~tLasAsS~El~kyg~k~g~tN~aAAy~tGlLlArRal~k 112 (297)
T 2zkr_n 49 YRMIVRVTNRDIICQIAYARIEGDMIVCARYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNR 112 (297)
T ss_dssp EEEEEEEETTEEEEEEEECCSSSCEEEEEEEGGGGGGTCCCSCSSSHHHHHHHHHHHHHHHHCC
T ss_pred ceEEEEEecCcEEEEEEeccCCCCEEEEEeecCcccccccccCCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999977 887 99999999882223235789999999999999999998
No 11
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Q
Probab=99.58 E-value=1.1e-15 Score=123.54 Aligned_cols=63 Identities=27% Similarity=0.252 Sum_probs=56.0
Q ss_pred eEEEEEecCCcEEEEEEEC--CCCe-EEEEEcchHHhhhcccCCCCHHHHHHHHHHHHHHHHhc--------CCcee
Q psy5246 53 HTLYFTTTKKHITGQIVHN--NGNV-VVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLET--------GISEI 118 (119)
Q Consensus 53 pRL~V~rSnkhiyAQlIdd--~~g~-L~sAST~e~~ik~~l~~~~n~~aA~~vG~~lAera~~~--------GI~~V 118 (119)
|||+ ||+||||||||+ ++++ ||||||.|+...++..+++|.+||+.+|.+||+||+++ |+++|
T Consensus 53 pRLV---SNrhIyaQII~~~i~GD~tLaSAsS~EL~kyG~k~g~~N~aAAy~tGlLiA~RAl~k~~ld~~y~G~~e~ 126 (304)
T 3iz5_Q 53 YRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEA 126 (304)
T ss_dssp SSSS---CSSCCEEEEEEEETTEEEEEEEEETTTGGGGSCCSCTTSHHHHHHHHHHHHHHHHTTCSSCCCCCSSSCC
T ss_pred ceee---cCCcEEEEEEecCCCCCEEEEEEecCchhhcccCCCCCcHHHHHHHHHHHHHHHHHhhCCccccCCcccc
Confidence 9999 999999999998 3446 99999999997765446789999999999999999999 88874
No 12
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=96.94 E-value=0.0031 Score=45.18 Aligned_cols=64 Identities=16% Similarity=0.154 Sum_probs=55.5
Q ss_pred eEEEEEecCCcEEEEEEECCCCeEEEEEcchHHhhhcccCCCCHHHHHHHHHHHHHHHHhcCCcee
Q psy5246 53 HTLYFTTTKKHITGQIVHNNGNVVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEI 118 (119)
Q Consensus 53 pRL~V~rSnkhiyAQlIdd~~g~L~sAST~e~~ik~~l~~~~n~~aA~~vG~~lAera~~~GI~~V 118 (119)
+.+.|+-|-++....|.|..+.++..+|+-...+++. ..+.-.||..+++.+|++|++.||..|
T Consensus 17 gi~hI~as~NNTivtiTd~~G~~~~~~SaG~~gfKg~--rk~tp~AA~~aa~~~~~~~~~~Gi~~v 80 (129)
T 2vqe_K 17 GRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGS--RKGTPYAAQLAALDAAKKAMAYGMQSV 80 (129)
T ss_dssp EEEEEEECSSCEEEEEECTTSCEEEECCTTTTTCCSG--GGGSHHHHHHHHHHHHHHHHTTTCCEE
T ss_pred eEEEEEecCCCEEEEEEcCCCCEEEEEeccceeEcCC--CcCCHHHHHHHHHHHHHHHHHhCCeEE
Confidence 8999999999999999998877788888777667654 246889999999999999999999876
No 13
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=96.58 E-value=0.0094 Score=41.97 Aligned_cols=64 Identities=16% Similarity=0.088 Sum_probs=54.1
Q ss_pred eEEEEEecCCcEEEEEEECCCCeEEEEEcchHHhhhcccCCCCHHHHHHHHHHHHHHHHhcCCcee
Q psy5246 53 HTLYFTTTKKHITGQIVHNNGNVVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEI 118 (119)
Q Consensus 53 pRL~V~rSnkhiyAQlIdd~~g~L~sAST~e~~ik~~l~~~~n~~aA~~vG~~lAera~~~GI~~V 118 (119)
--+.|+-|-++....|-|..+.+++.+|+-...+++.- .+.-.||...++.++++|++.||..|
T Consensus 7 gi~hI~as~NNTivtiTD~~G~~i~~~S~G~~gfKg~r--k~tp~AA~~aa~~~~~~~~~~Gi~~v 70 (117)
T 3r8n_K 7 GVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSR--KSTPFAAQVAAERCADAVKEYGIKNL 70 (117)
T ss_dssp EEEEEEECSSCEEEEEECTTSCCSEEEETGGGSCCGGG--GSSHHHHHHHHHHHHHHHTTSCCCEE
T ss_pred eEEEEEcccCCEEEEEEcCCCCEEEEEcCCccccCCCc--cCCHHHHHHHHHHHHHHHHHhCCcEE
Confidence 56889999999999999988777888887766676542 46788999999999999999999876
No 14
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.49 E-value=0.018 Score=41.63 Aligned_cols=66 Identities=18% Similarity=0.138 Sum_probs=54.3
Q ss_pred ceeEEEEEecCCcEEEEEEECCCC-eEEEEEcchHHhhhcccCCCCHHHHHHHHHHHHHHHHhcCCcee
Q psy5246 51 YWHTLYFTTTKKHITGQIVHNNGN-VVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEI 118 (119)
Q Consensus 51 ~~pRL~V~rSnkhiyAQlIdd~~g-~L~sAST~e~~ik~~l~~~~n~~aA~~vG~~lAera~~~GI~~V 118 (119)
-+.-+.|+-|-++....|.|..+. +|+.+|.-...+++. ..+.--||...++.+|++|++.||..|
T Consensus 13 ~~gi~hI~asfNNTivtiTD~~G~~~i~~~S~G~~gfkg~--~ksTp~AA~~aa~~~~~~a~e~Gi~~v 79 (137)
T 3j20_M 13 KWGIAHIYSSFNNTIIHITDITGAETISRWSGGMVVKADR--DEPSPYAAMLAARRAAEEALEKGIVGV 79 (137)
T ss_dssp EEEEEEEEECSSCEEEEEEESSSCSEEEEEEGGGTCSCTT--TSSSHHHHHHHHHHHHHHHHHHTEEEE
T ss_pred cceEEEEEcCCCCEEEEEEcCCCCEEEEEEccceeeecCC--ccCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 468999999999999999998886 587777765555432 246778999999999999999999876
No 15
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=96.38 E-value=0.0037 Score=45.48 Aligned_cols=64 Identities=14% Similarity=0.132 Sum_probs=55.8
Q ss_pred eEEEEEecCCcEEEEEEECCCCeEEEEEcchHHhhhcccCCCCHHHHHHHHHHHHHHHHhcCCcee
Q psy5246 53 HTLYFTTTKKHITGQIVHNNGNVVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEI 118 (119)
Q Consensus 53 pRL~V~rSnkhiyAQlIdd~~g~L~sAST~e~~ik~~l~~~~n~~aA~~vG~~lAera~~~GI~~V 118 (119)
+.+.|+-|.++....|.|..+.+++.+|+-...+++. ..+.-.||..+++.++++|++.||..|
T Consensus 30 gi~hI~as~NNTivtiTD~~G~~i~~~SaG~~GfKg~--rksTp~AA~~aa~~~~~~a~e~Gi~~v 93 (140)
T 3bbn_K 30 GVIHVQASFNNTIVTVTDVRGRVVSWASAGTCGFRGT--KRGTPFAAQTAAGNAIRTVVEQGMQRA 93 (140)
T ss_dssp CEEEEEECSSCEEEEEECSSSCEEEEEETTTSSCCTT--SCSSHHHHHHHHTSGGGTSTTTCCCEE
T ss_pred eEEEEEecCCCEEEEEEcCCCCEEEEEeccceeEccc--ccCCHHHHHHHHHHHHHHHHHhCCeEE
Confidence 7999999999999999998887788888877667654 357889999999999999999999876
No 16
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Probab=96.07 E-value=0.016 Score=42.54 Aligned_cols=66 Identities=15% Similarity=0.119 Sum_probs=51.2
Q ss_pred eeEEEEEecCCcEEEEEEECCCCeEEEEEcchHHhhhcccCCCCHHHHHHHHHHHHHHHHhcCCcee
Q psy5246 52 WHTLYFTTTKKHITGQIVHNNGNVVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEI 118 (119)
Q Consensus 52 ~pRL~V~rSnkhiyAQlIdd~~g~L~sAST~e~~ik~~l~~~~n~~aA~~vG~~lAera~~~GI~~V 118 (119)
|+.+.|+-|-++....|.|..+..+.+.||-...+++. ...+.--||...++.+|++|++.||..|
T Consensus 28 ~gi~hI~asfNNTiVtiTD~~G~~~~~~ssgg~~~k~~-r~ksTpyAAq~aa~~~a~~a~e~Gi~~v 93 (151)
T 2xzm_K 28 FGVCHIMATWNDTFIHVTDLSGRETLVRVTGGMKVKAD-REESSPYAAMQAAIDVVNRCKELKINAL 93 (151)
T ss_dssp EEEEEEEBCSSCBCCEEECTTCCSEEEECCHHHHCSSG-GGGSCHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred eeEEEEEccCCCEEEEEECCCCCEEEEEecCcceEeCC-CCcCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 58999999999999999998877644445544444332 1245778999999999999999999876
No 17
>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K*
Probab=95.08 E-value=0.018 Score=41.72 Aligned_cols=66 Identities=15% Similarity=0.190 Sum_probs=51.9
Q ss_pred eeEEEEEecCCcEEEEEEECCCCeEEEEEcchHHhhhcccCCCCHHHHHHHHHHHHHHHHhcCCcee
Q psy5246 52 WHTLYFTTTKKHITGQIVHNNGNVVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEI 118 (119)
Q Consensus 52 ~pRL~V~rSnkhiyAQlIdd~~g~L~sAST~e~~ik~~l~~~~n~~aA~~vG~~lAera~~~GI~~V 118 (119)
+.-+.|+-|-++....|.|..+..+...|+-...+++.- ..+.--||...++.+|++|++.||..|
T Consensus 14 ~gi~hI~asfNNTivtvTD~~G~~~~~~ssG~~gfKg~r-~ksTpyAAq~aa~~~a~~a~e~Gi~~v 79 (137)
T 3u5c_O 14 FGVARIYASFNDTFVHVTDLSGKETIARVTGGMKVKADR-DESSPYAAMLAAQDVAAKCKEVGITAV 79 (137)
T ss_dssp EEECCEEEETTEEEECCEETTSSSCCCCCBTTTTSCCST-TTTCHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred eEEEEEEccCCCEEEEEEcCCCCEEEEEeCCCcEEeCCc-ccCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 478889999999999999988876555555544565421 135778999999999999999999876
No 18
>2zko_A NS1, NS1A, non-structural protein 1; dsRNA, protein-RNA interaction; 1.70A {Influenza a virus} PDB: 2z0a_A 1ns1_A 1ail_A 3m8a_A
Probab=33.52 E-value=33 Score=21.86 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHHHHHHHHHh
Q psy5246 93 TNDICAYSNLARVLAQRCLE 112 (119)
Q Consensus 93 ~~n~~aA~~vG~~lAera~~ 112 (119)
+-|++.|..+|+.|.|+.++
T Consensus 54 gldie~at~~GkqIveril~ 73 (73)
T 2zko_A 54 GLDIETATRAGKQIVERILK 73 (73)
T ss_dssp TCCHHHHHHHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHHHHHHhC
Confidence 46999999999999999763
No 19
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=29.47 E-value=79 Score=21.59 Aligned_cols=24 Identities=8% Similarity=0.112 Sum_probs=21.9
Q ss_pred eEEEEEecCCcEEEEEEECCCCeE
Q psy5246 53 HTLYFTTTKKHITGQIVHNNGNVV 76 (119)
Q Consensus 53 pRL~V~rSnkhiyAQlIdd~~g~L 76 (119)
-+..|.....-++++|+|.++|.+
T Consensus 58 L~F~vdee~~~~vVkVvD~~TgEV 81 (117)
T 2hc5_A 58 LKFELHDKLNEYYVKVIEDSTNEV 81 (117)
T ss_dssp EEEEEEEETTEEEEEEEETTTTEE
T ss_pred eEEEEecCCCcEEEEEEECCCCcE
Confidence 689999999999999999999963
No 20
>3b09_A Peptidyl-prolyl CIS-trans isomerase; Val-Leu zipper, helices, chaperone; 1.90A {Shewanella}
Probab=23.48 E-value=68 Score=20.70 Aligned_cols=21 Identities=10% Similarity=0.134 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHhcCCce
Q psy5246 97 CAYSNLARVLAQRCLETGISE 117 (119)
Q Consensus 97 ~aA~~vG~~lAera~~~GI~~ 117 (119)
..+|.||..||+..+..|++.
T Consensus 31 K~SYaIG~~mG~~L~~~g~~~ 51 (88)
T 3b09_A 31 HASYGVGRQMGEQLAANSFEG 51 (88)
T ss_dssp HHHHHHHHHHHHHHHHSCCTT
T ss_pred HHHHHHHHHHHHHHHhCCccc
Confidence 589999999999999887753
No 21
>1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} SCOP: c.94.1.1 d.50.2.1 PDB: 1ah5_A* 2ypn_A* 1ypn_A* 1pda_A*
Probab=22.39 E-value=1.1e+02 Score=24.40 Aligned_cols=41 Identities=12% Similarity=0.211 Sum_probs=27.8
Q ss_pred cEEEEEEECCCCeEEEEEcchHHhhhcccCCCCHHHHHHHHHHHHHHHHhcC
Q psy5246 63 HITGQIVHNNGNVVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETG 114 (119)
Q Consensus 63 hiyAQlIdd~~g~L~sAST~e~~ik~~l~~~~n~~aA~~vG~~lAera~~~G 114 (119)
++++.+.+.++..++..+- .++.+.|..+|..+|+..++.|
T Consensus 258 ~l~g~v~s~dG~~~~~~~~-----------~g~~~~a~~lG~~la~~ll~~g 298 (313)
T 1gtk_A 258 WLRALVGAPDGSQIIRGER-----------RGAPQDAEQMGISLAEELLNNG 298 (313)
T ss_dssp EEEEEEECTTSSCEEEEEE-----------EECGGGHHHHHHHHHHHHHHTT
T ss_pred EEEEEEEcCCCCEEEEEEE-----------EcCHHHHHHHHHHHHHHHHHcC
Confidence 5666666665555444431 1345578899999999998876
No 22
>1v8d_A Hypothetical protein (TT1679); X-RAY craytallography, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.16A {Thermus thermophilus} SCOP: c.140.1.1
Probab=22.06 E-value=1.5e+02 Score=22.94 Aligned_cols=43 Identities=23% Similarity=0.261 Sum_probs=32.8
Q ss_pred CCe-EEEEEcchHHhhhcccCCCCHHHHHHHHHHHHHHHHhcCCc
Q psy5246 73 GNV-VVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGIS 116 (119)
Q Consensus 73 ~g~-L~sAST~e~~ik~~l~~~~n~~aA~~vG~~lAera~~~GI~ 116 (119)
+.. ++.+||.|-. -..+.+.++.+.|..|=+.|-+-+.+.||.
T Consensus 63 G~ifVvGcSTSEV~-G~~IGt~ss~eva~aI~~~l~~~~~~~Gi~ 106 (235)
T 1v8d_A 63 GSLFVLGGSTSEVL-GERVGTRPSLEAAHAVLEGLLPPLLERGVH 106 (235)
T ss_dssp TCEEEEEECHHHHH-C----CCCCHHHHHHHHHHHHHHHHTTTCE
T ss_pred CCEEEEeeeHHHhC-CccCCCCCcHHHHHHHHHHHHHHHHhcCcE
Confidence 446 8999999854 334566789999999999999999999986
Done!