Your job contains 1 sequence.
>psy5246
MFAKKTTRLLSNNVTGAAGKCVHNKNPRNLERLRIARKPQGYHLDRLGREYWHTLYFTTT
KKHITGQIVHNNGNVVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEIT
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy5246
(119 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0026741 - symbol:mRpL18 "mitochondrial ribosomal p... 324 3.4e-29 1
UNIPROTKB|Q9H0U6 - symbol:MRPL18 "39S ribosomal protein L... 271 1.4e-23 1
UNIPROTKB|J9P2G0 - symbol:MRPL18 "Uncharacterized protein... 267 3.8e-23 1
UNIPROTKB|F1SB64 - symbol:MRPL18 "Uncharacterized protein... 266 4.8e-23 1
MGI|MGI:1914931 - symbol:Mrpl18 "mitochondrial ribosomal ... 265 6.1e-23 1
UNIPROTKB|Q3ZBR7 - symbol:MRPL18 "39S ribosomal protein L... 264 7.8e-23 1
RGD|1306387 - symbol:Mrpl18 "mitochondrial ribosomal prot... 264 7.8e-23 1
UNIPROTKB|E1BVT7 - symbol:MRPL18 "Uncharacterized protein... 258 3.4e-22 1
ZFIN|ZDB-GENE-061013-632 - symbol:zgc:153420 "zgc:153420"... 180 6.2e-14 1
WB|WBGene00017044 - symbol:mrpl-18 species:6239 "Caenorha... 168 1.2e-12 1
TIGR_CMR|SO_0247 - symbol:SO_0247 "ribosomal protein L18"... 100 1.9e-05 1
UNIPROTKB|P0C018 - symbol:rplR "50S ribosomal subunit pro... 95 6.3e-05 1
UNIPROTKB|Q9KP00 - symbol:rplR "50S ribosomal protein L18... 93 0.00010 1
TIGR_CMR|VC_2580 - symbol:VC_2580 "ribosomal protein L18"... 93 0.00010 1
TAIR|locus:2180310 - symbol:AT5G27820 species:3702 "Arabi... 91 0.00017 1
TIGR_CMR|CPS_0617 - symbol:CPS_0617 "ribosomal protein L1... 87 0.00045 1
>FB|FBgn0026741 [details] [associations]
symbol:mRpL18 "mitochondrial ribosomal protein L18"
species:7227 "Drosophila melanogaster" [GO:0005762 "mitochondrial
large ribosomal subunit" evidence=ISS] [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0032543 "mitochondrial
translation" evidence=IC] EMBL:AE013599 GO:GO:0005762 GO:GO:0003735
CTD:29074 eggNOG:NOG326747 GeneTree:ENSGT00390000006394
EMBL:AY118885 RefSeq:NP_610818.1 UniGene:Dm.23243 SMR:Q7JVK1
STRING:Q7JVK1 EnsemblMetazoa:FBtr0087852 GeneID:36406
KEGG:dme:Dmel_CG12373 UCSC:CG12373-RA FlyBase:FBgn0026741
InParanoid:Q7JVK1 OMA:WHTLEIN OrthoDB:EOG4J0ZRB GenomeRNAi:36406
NextBio:798399 Uniprot:Q7JVK1
Length = 186
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 58/103 (56%), Positives = 79/103 (76%)
Query: 17 AAGKCVHNKNPRNLERLRIARKPQGYHLDRLGREYWHTLYFTTTKKHITGQIVHNNGNVV 76
A+ + V N+NPRNLERLRIA KP GYHL++ GR YWHTL T+ ++++G + H +
Sbjct: 25 ASTEYVINRNPRNLERLRIAYKPVGYHLEKPGRSYWHTLEINTSGRYVSGDVKHFENGTI 84
Query: 77 VSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEIT 119
+SAST+EWA+K+ LY TND A+ NL RVLAQRCL++GI+E+T
Sbjct: 85 LSASTSEWAIKQQLYKTNDTSAFVNLGRVLAQRCLQSGITEMT 127
>UNIPROTKB|Q9H0U6 [details] [associations]
symbol:MRPL18 "39S ribosomal protein L18, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=NAS] [GO:0005761 "mitochondrial ribosome"
evidence=NAS] [GO:0006412 "translation" evidence=NAS] [GO:0008097
"5S rRNA binding" evidence=IDA] [GO:0035928 "rRNA import into
mitochondrion" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR005484 Pfam:PF00861 GO:GO:0006412
GO:GO:0003735 GO:GO:0008097 GO:GO:0005761 EMBL:AL135914
EMBL:AL139045 GO:GO:0035928 CTD:29074 eggNOG:NOG326747
HOGENOM:HOG000043958 HOVERGEN:HBG001529 OMA:KERGWGT
OrthoDB:EOG46T32P EMBL:AL136633 EMBL:AF161556 EMBL:CR533491
EMBL:BC001623 IPI:IPI00160421 RefSeq:NP_054880.2 UniGene:Hs.416998
ProteinModelPortal:Q9H0U6 SMR:Q9H0U6 IntAct:Q9H0U6 STRING:Q9H0U6
PhosphoSite:Q9H0U6 DMDM:41017797 PaxDb:Q9H0U6 PRIDE:Q9H0U6
DNASU:29074 Ensembl:ENST00000367034 GeneID:29074 KEGG:hsa:29074
UCSC:uc003qsw.4 GeneCards:GC06P160210 HGNC:HGNC:14477 HPA:HPA028774
HPA:HPA028775 MIM:611831 neXtProt:NX_Q9H0U6 PharmGKB:PA30947
InParanoid:Q9H0U6 PhylomeDB:Q9H0U6 ChiTaRS:MRPL18 GenomeRNAi:29074
NextBio:52035 Bgee:Q9H0U6 CleanEx:HS_MRPL18 Genevestigator:Q9H0U6
GermOnline:ENSG00000112110 Uniprot:Q9H0U6
Length = 180
Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 50/93 (53%), Positives = 65/93 (69%)
Query: 24 NKNPRNLERLRIARKPQGYHLDRLGREYWHTLYFTTTKKHITGQIVHNNGNVVVSASTNE 83
N+NPRNLE L +ARK +G+ RE+WH L T+ H+ + H NG VVVSAST E
Sbjct: 50 NRNPRNLELLSVARKERGWRTVFPSREFWHRLRVIRTQHHVEALVEHQNGKVVVSASTRE 109
Query: 84 WALKKHLYNTNDICAYSNLARVLAQRCLETGIS 116
WA+KKHLY+T ++ A ++ RVLAQRCLE GI+
Sbjct: 110 WAIKKHLYSTRNVVACESIGRVLAQRCLEAGIN 142
>UNIPROTKB|J9P2G0 [details] [associations]
symbol:MRPL18 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR005484
Pfam:PF00861 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 CTD:29074
GeneTree:ENSGT00390000006394 OMA:KERGWGT EMBL:AAEX03000318
RefSeq:XP_003432596.1 Ensembl:ENSCAFT00000046348 GeneID:476260
KEGG:cfa:476260 Uniprot:J9P2G0
Length = 194
Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 49/93 (52%), Positives = 65/93 (69%)
Query: 24 NKNPRNLERLRIARKPQGYHLDRLGREYWHTLYFTTTKKHITGQIVHNNGNVVVSASTNE 83
N+NPRNLE L +ARK +G+ RE+WH L T+ H+ + H NG VVVSAST E
Sbjct: 64 NRNPRNLELLGVARKERGWGTTWPSREFWHRLRVIKTQHHVEALVEHRNGKVVVSASTRE 123
Query: 84 WALKKHLYNTNDICAYSNLARVLAQRCLETGIS 116
WA+KKHLY+T ++ A ++ RVLA+RCLE GI+
Sbjct: 124 WAIKKHLYSTRNVVACESIGRVLAERCLEAGIN 156
>UNIPROTKB|F1SB64 [details] [associations]
symbol:MRPL18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0035928 "rRNA import into mitochondrion" evidence=IEA]
[GO:0008097 "5S rRNA binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR005484 Pfam:PF00861 GO:GO:0005739 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0008097 GO:GO:0035928 CTD:29074
GeneTree:ENSGT00390000006394 OMA:KERGWGT EMBL:CU855864
RefSeq:XP_001928391.1 UniGene:Ssc.8554 Ensembl:ENSSSCT00000004475
GeneID:100156324 KEGG:ssc:100156324 Uniprot:F1SB64
Length = 180
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 50/93 (53%), Positives = 65/93 (69%)
Query: 24 NKNPRNLERLRIARKPQGYHLDRLGREYWHTLYFTTTKKHITGQIVHNNGNVVVSASTNE 83
N+NPRNLE L +ARK +G+ RE+WH L T+ HI + H NG VVVSAST E
Sbjct: 50 NRNPRNLELLAVARKERGWGTVWPSREFWHRLRVIRTQHHIEALVEHRNGQVVVSASTRE 109
Query: 84 WALKKHLYNTNDICAYSNLARVLAQRCLETGIS 116
WA+KKHLY+T ++ A ++ RVLA+RCLE GI+
Sbjct: 110 WAIKKHLYSTRNVVACESVGRVLAERCLEAGIN 142
>MGI|MGI:1914931 [details] [associations]
symbol:Mrpl18 "mitochondrial ribosomal protein L18"
species:10090 "Mus musculus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005840
"ribosome" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
[GO:0008097 "5S rRNA binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0035928 "rRNA import
into mitochondrion" evidence=ISO] MGI:MGI:1914931 GO:GO:0005739
GO:GO:0005840 GO:GO:0008097 GO:GO:0035928 CTD:29074
eggNOG:NOG326747 GeneTree:ENSGT00390000006394 HOGENOM:HOG000043958
HOVERGEN:HBG001529 OMA:KERGWGT OrthoDB:EOG46T32P EMBL:AK003104
EMBL:AK008680 EMBL:AK010150 EMBL:BC011425 IPI:IPI00387389
RefSeq:NP_080586.1 UniGene:Mm.290166 ProteinModelPortal:Q9CQL5
SMR:Q9CQL5 STRING:Q9CQL5 PhosphoSite:Q9CQL5 PaxDb:Q9CQL5
PRIDE:Q9CQL5 DNASU:67681 Ensembl:ENSMUST00000079121 GeneID:67681
KEGG:mmu:67681 UCSC:uc008alj.1 InParanoid:Q9CQL5 NextBio:325243
Bgee:Q9CQL5 CleanEx:MM_MRPL18 Genevestigator:Q9CQL5
GermOnline:ENSMUSG00000057388 Uniprot:Q9CQL5
Length = 180
Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 50/93 (53%), Positives = 65/93 (69%)
Query: 24 NKNPRNLERLRIARKPQGYHLDRLGREYWHTLYFTTTKKHITGQIVHNNGNVVVSASTNE 83
N+NPRNLE L +ARK +G+ RE+WH L T+ H+ + H NG VVVSAST E
Sbjct: 50 NRNPRNLELLGVARKERGWATVWPNREFWHRLRVVKTQHHVEAFVEHLNGQVVVSASTRE 109
Query: 84 WALKKHLYNTNDICAYSNLARVLAQRCLETGIS 116
WA+KKHLY+T ++ A ++ RVLAQRCLE GI+
Sbjct: 110 WAIKKHLYSTRNVVACESIGRVLAQRCLEAGIN 142
>UNIPROTKB|Q3ZBR7 [details] [associations]
symbol:MRPL18 "39S ribosomal protein L18, mitochondrial"
species:9913 "Bos taurus" [GO:0008097 "5S rRNA binding"
evidence=ISS] [GO:0035928 "rRNA import into mitochondrion"
evidence=ISS] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
InterPro:IPR005484 Pfam:PF00861 GO:GO:0005739 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0008097 GO:GO:0035928
EMBL:BC103149 IPI:IPI00692682 RefSeq:NP_001029780.1
UniGene:Bt.49496 ProteinModelPortal:Q3ZBR7 STRING:Q3ZBR7
Ensembl:ENSBTAT00000001699 GeneID:534352 KEGG:bta:534352 CTD:29074
eggNOG:NOG326747 GeneTree:ENSGT00390000006394 HOGENOM:HOG000043958
HOVERGEN:HBG001529 InParanoid:Q3ZBR7 OMA:KERGWGT OrthoDB:EOG46T32P
NextBio:20876370 Uniprot:Q3ZBR7
Length = 180
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 50/93 (53%), Positives = 64/93 (68%)
Query: 24 NKNPRNLERLRIARKPQGYHLDRLGREYWHTLYFTTTKKHITGQIVHNNGNVVVSASTNE 83
N+NPRNLE L +ARK +G+ RE+WH L ++ HI + H NG VVVSAST E
Sbjct: 50 NRNPRNLELLAVARKERGWGTVWPSREFWHRLRVIRSQHHIEALVEHRNGQVVVSASTRE 109
Query: 84 WALKKHLYNTNDICAYSNLARVLAQRCLETGIS 116
WA+KKHLY+T + A ++ RVLAQRCLE GI+
Sbjct: 110 WAIKKHLYSTKSVVACESVGRVLAQRCLEAGIN 142
>RGD|1306387 [details] [associations]
symbol:Mrpl18 "mitochondrial ribosomal protein L18"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0008097 "5S rRNA binding"
evidence=IEA;ISO] [GO:0035928 "rRNA import into mitochondrion"
evidence=IEA;ISO] InterPro:IPR005484 Pfam:PF00861 RGD:1306387
GO:GO:0005739 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0008097 EMBL:CH474059 GO:GO:0035928 CTD:29074
eggNOG:NOG326747 GeneTree:ENSGT00390000006394 HOGENOM:HOG000043958
HOVERGEN:HBG001529 OMA:KERGWGT OrthoDB:EOG46T32P EMBL:BC167033
IPI:IPI00200432 RefSeq:NP_001099675.1 UniGene:Rn.4178 STRING:B2RZ57
Ensembl:ENSRNOT00000020064 GeneID:292244 KEGG:rno:292244
NextBio:633938 Genevestigator:B2RZ57 Uniprot:B2RZ57
Length = 180
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 50/93 (53%), Positives = 65/93 (69%)
Query: 24 NKNPRNLERLRIARKPQGYHLDRLGREYWHTLYFTTTKKHITGQIVHNNGNVVVSASTNE 83
N+NPRNLE L +ARK +G+ RE+WH L T+ H+ + H NG VVVSAST E
Sbjct: 50 NRNPRNLELLGVARKERGWATVWPNREFWHRLRVVKTQHHVEAFVEHLNGQVVVSASTRE 109
Query: 84 WALKKHLYNTNDICAYSNLARVLAQRCLETGIS 116
WA+KKHLY+T ++ A ++ RVLAQRCLE GI+
Sbjct: 110 WAIKKHLYSTRNVVACESVGRVLAQRCLEAGIN 142
>UNIPROTKB|E1BVT7 [details] [associations]
symbol:MRPL18 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0008097 "5S rRNA binding" evidence=IEA] [GO:0035928 "rRNA
import into mitochondrion" evidence=IEA] GO:GO:0005739
GO:GO:0008097 GO:GO:0035928 CTD:29074 GeneTree:ENSGT00390000006394
OMA:KERGWGT EMBL:AADN02035516 IPI:IPI00596687 RefSeq:XP_419623.1
UniGene:Gga.7105 Ensembl:ENSGALT00000018992 GeneID:421585
KEGG:gga:421585 NextBio:20824329 Uniprot:E1BVT7
Length = 183
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 48/93 (51%), Positives = 65/93 (69%)
Query: 24 NKNPRNLERLRIARKPQGYHLDRLGREYWHTLYFTTTKKHITGQIVHNNGNVVVSASTNE 83
N+NPRNLE+L +ARK +G+ RE+WH L T+ ++ + +NGNVV+SAST E
Sbjct: 52 NRNPRNLEQLALARKERGWKTTWPKREFWHRLRLERTQHYVEAFVERSNGNVVLSASTRE 111
Query: 84 WALKKHLYNTNDICAYSNLARVLAQRCLETGIS 116
WA+KKHLY+ + A NL RV+AQRCLE GI+
Sbjct: 112 WAIKKHLYSPTGVTACRNLGRVMAQRCLEAGIN 144
>ZFIN|ZDB-GENE-061013-632 [details] [associations]
symbol:zgc:153420 "zgc:153420" species:7955 "Danio
rerio" [GO:0005840 "ribosome" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR005484 Pfam:PF00861 ZFIN:ZDB-GENE-061013-632
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 eggNOG:NOG326747
HOGENOM:HOG000043958 HOVERGEN:HBG001529 OrthoDB:EOG46T32P
EMBL:BC124672 IPI:IPI00802470 RefSeq:NP_001070798.1
UniGene:Dr.78921 ProteinModelPortal:Q08BK7 STRING:Q08BK7
GeneID:768187 KEGG:dre:768187 InParanoid:Q08BK7 NextBio:20918502
ArrayExpress:Q08BK7 Uniprot:Q08BK7
Length = 191
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 37/96 (38%), Positives = 58/96 (60%)
Query: 24 NKNPRNLERLRIARKPQGYHLDRLGREYWHTLYFTTTKKHITGQIVH-NNGNVVVSASTN 82
N+NPRNLE++ +A K +G+ R+Y+H L T+KH T ++ ++ + V+S ST
Sbjct: 60 NRNPRNLEQMALAVKDRGWATVWPSRKYYHRLVLRRTQKHTTAEVYSCDSTDPVLSCSTT 119
Query: 83 EWALKKHLYNTNDICAYSNLARVLAQRCLETGISEI 118
EWALK+ L + + A + VLAQRC GI+ +
Sbjct: 120 EWALKRQLGSMRSVAACRAVGEVLAQRCCGAGITRL 155
>WB|WBGene00017044 [details] [associations]
symbol:mrpl-18 species:6239 "Caenorhabditis elegans"
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 EMBL:FO080532 eggNOG:NOG326747
GeneTree:ENSGT00390000006394 PIR:S44789 RefSeq:NP_498778.1
ProteinModelPortal:P34378 DIP:DIP-27290N IntAct:P34378
MINT:MINT-1066874 STRING:P34378 PaxDb:P34378 EnsemblMetazoa:D2007.4
GeneID:183940 KEGG:cel:CELE_D2007.4 UCSC:D2007.4 CTD:183940
WormBase:D2007.4 HOGENOM:HOG000020894 InParanoid:P34378 OMA:KSHREGR
NextBio:922930 Uniprot:P34378
Length = 170
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 38/94 (40%), Positives = 51/94 (54%)
Query: 24 NKNPRNLERLRIARKPQGYHL--DRLGREYWHTLYFTTTKKHITGQIVHNNGNVVVSAST 81
N+NPRN E + GY DR R Y + + K H G++VH VV+SAST
Sbjct: 11 NRNPRNNELMGRQAPNTGYQFEKDRAARSYIYKVELVEGKSHREGRLVHYQDGVVISAST 70
Query: 82 NEWALKKHLYNTNDICAYSNLARVLAQRCLETGI 115
E ++ LY+ D A N+ RVLA RCL++GI
Sbjct: 71 KEPSIASQLYSKTDTSAALNIGRVLALRCLQSGI 104
>TIGR_CMR|SO_0247 [details] [associations]
symbol:SO_0247 "ribosomal protein L18" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861 GO:GO:0006412
GO:GO:0005840 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0003735
GO:GO:0019843 eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881
TIGRFAMs:TIGR00060 ProtClustDB:PRK05593 HAMAP:MF_01337_B
RefSeq:NP_715887.1 ProteinModelPortal:Q8EK53 SMR:Q8EK53
GeneID:1168130 KEGG:son:SO_0247 PATRIC:23520187 OMA:GRQTRAK
Uniprot:Q8EK53
Length = 116
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 19/59 (32%), Positives = 37/59 (62%)
Query: 60 TKKHITGQIVHNNGNVVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEI 118
T +HI Q+++ VV +AST E A+K+ L +T ++ A + + +A+R +E G++ +
Sbjct: 31 TPRHIYAQVINPEAQVVAAASTVEKAVKEQLKSTGNVDAAKAVGKFVAERAIEKGVTNV 89
>UNIPROTKB|P0C018 [details] [associations]
symbol:rplR "50S ribosomal subunit protein L18"
species:83333 "Escherichia coli K-12" [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861 EMBL:X01563
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 EMBL:U18997 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 PDB:2VHM PDBsum:2VHM PDB:2RDO
PDBsum:2RDO eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881
OMA:GNKYHGR TIGRFAMs:TIGR00060 PDB:3J0T PDB:3J0W PDB:3J0Y PDB:3J11
PDB:3J12 PDB:3J14 PDB:3SGF PDB:3UOS PDBsum:3J0T PDBsum:3J0W
PDBsum:3J0Y PDBsum:3J11 PDBsum:3J12 PDBsum:3J14 PDBsum:3SGF
PDBsum:3UOS PDB:1P85 PDB:1P86 PDB:1VS6 PDB:1VS8 PDB:1VT2 PDB:2AW4
PDB:2AWB PDB:2GYA PDB:2GYC PDB:2I2T PDB:2I2V PDB:2J28 PDB:2QAM
PDB:2QAO PDB:2QBA PDB:2QBC PDB:2QBE PDB:2QBG PDB:2QBI PDB:2QBK
PDB:2QOV PDB:2QOX PDB:2QOZ PDB:2QP1 PDB:2VHN PDB:2WWQ PDB:2Z4L
PDB:2Z4N PDB:3DF2 PDB:3DF4 PDB:3E1B PDB:3E1D PDB:3FIK PDB:3I1N
PDB:3I1P PDB:3I1R PDB:3I1T PDB:3I20 PDB:3I22 PDB:3IZT PDB:3IZU
PDB:3J01 PDB:3J19 PDB:3KCR PDB:3OAS PDB:3OAT PDB:3OFC PDB:3OFD
PDB:3OFQ PDB:3OFR PDB:3OFZ PDB:3OG0 PDB:3ORB PDB:3R8S PDB:3R8T
PDB:4GAR PDB:4GAU PDBsum:1P85 PDBsum:1P86 PDBsum:1VS6 PDBsum:1VS8
PDBsum:1VT2 PDBsum:2AW4 PDBsum:2AWB PDBsum:2GYA PDBsum:2GYC
PDBsum:2I2T PDBsum:2I2V PDBsum:2J28 PDBsum:2QAM PDBsum:2QAO
PDBsum:2QBA PDBsum:2QBC PDBsum:2QBE PDBsum:2QBG PDBsum:2QBI
PDBsum:2QBK PDBsum:2QOV PDBsum:2QOX PDBsum:2QOZ PDBsum:2QP1
PDBsum:2VHN PDBsum:2WWQ PDBsum:2Z4L PDBsum:2Z4N PDBsum:3DF2
PDBsum:3DF4 PDBsum:3E1B PDBsum:3E1D PDBsum:3FIK PDBsum:3I1N
PDBsum:3I1P PDBsum:3I1R PDBsum:3I1T PDBsum:3I20 PDBsum:3I22
PDBsum:3IZT PDBsum:3IZU PDBsum:3J01 PDBsum:3J19 PDBsum:3KCR
PDBsum:3OAS PDBsum:3OAT PDBsum:3OFC PDBsum:3OFD PDBsum:3OFQ
PDBsum:3OFR PDBsum:3OFZ PDBsum:3OG0 PDBsum:3ORB PDBsum:3R8S
PDBsum:3R8T PDBsum:4GAR PDBsum:4GAU PDB:3BBX PDBsum:3BBX
ProtClustDB:PRK05593 HAMAP:MF_01337_B PIR:A02803 RefSeq:NP_417763.1
RefSeq:YP_492128.1 ProteinModelPortal:P0C018 SMR:P0C018
DIP:DIP-47908N IntAct:P0C018 MINT:MINT-1293631 PaxDb:P0C018
PRIDE:P0C018 EnsemblBacteria:EBESCT00000004130
EnsemblBacteria:EBESCT00000018241 GeneID:12934402 GeneID:947804
KEGG:ecj:Y75_p3872 KEGG:eco:b3304 PATRIC:32122040 EchoBASE:EB0872
EcoGene:EG10879 BioCyc:EcoCyc:EG10879-MONOMER
BioCyc:ECOL316407:JW3266-MONOMER EvolutionaryTrace:P0C018
Genevestigator:P0C018 Uniprot:P0C018
Length = 117
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 22/61 (36%), Positives = 39/61 (63%)
Query: 60 TKKHITGQIVHNNGN-VVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEI 118
T +HI Q++ NG+ V+V+AST E A+ + L T + A + + + +A+R LE GI ++
Sbjct: 31 TPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDV 90
Query: 119 T 119
+
Sbjct: 91 S 91
>UNIPROTKB|Q9KP00 [details] [associations]
symbol:rplR "50S ribosomal protein L18" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR004389 InterPro:IPR005484
Pfam:PF00861 GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 eggNOG:COG0256 KO:K02881
OMA:GNKYHGR TIGRFAMs:TIGR00060 ProtClustDB:PRK05593
HAMAP:MF_01337_B PIR:F82057 RefSeq:NP_232208.1
ProteinModelPortal:Q9KP00 SMR:Q9KP00 PRIDE:Q9KP00 DNASU:2615597
GeneID:2615597 KEGG:vch:VC2580 PATRIC:20084186 Uniprot:Q9KP00
Length = 117
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 19/60 (31%), Positives = 38/60 (63%)
Query: 60 TKKHITGQIVHNNGN-VVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEI 118
T +H+ Q++ NG+ V+ +AST E A+++ + T +I A + + +A+R LE G++ +
Sbjct: 31 TPRHVYAQVIAANGSEVIAAASTVEKAIREQVKYTGNIDAAKAVGKAVAERALEKGVTVV 90
>TIGR_CMR|VC_2580 [details] [associations]
symbol:VC_2580 "ribosomal protein L18" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0256 KO:K02881 OMA:GNKYHGR
TIGRFAMs:TIGR00060 ProtClustDB:PRK05593 HAMAP:MF_01337_B PIR:F82057
RefSeq:NP_232208.1 ProteinModelPortal:Q9KP00 SMR:Q9KP00
PRIDE:Q9KP00 DNASU:2615597 GeneID:2615597 KEGG:vch:VC2580
PATRIC:20084186 Uniprot:Q9KP00
Length = 117
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 19/60 (31%), Positives = 38/60 (63%)
Query: 60 TKKHITGQIVHNNGN-VVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEI 118
T +H+ Q++ NG+ V+ +AST E A+++ + T +I A + + +A+R LE G++ +
Sbjct: 31 TPRHVYAQVIAANGSEVIAAASTVEKAIREQVKYTGNIDAAKAVGKAVAERALEKGVTVV 90
>TAIR|locus:2180310 [details] [associations]
symbol:AT5G27820 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0042254 "ribosome
biogenesis" evidence=ISS] [GO:0006354 "DNA-dependent transcription,
elongation" evidence=RCA] InterPro:IPR005484 Pfam:PF00861
EMBL:CP002688 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:AY085957 EMBL:BT024558 IPI:IPI00535527 RefSeq:NP_198134.1
UniGene:At.30784 HSSP:P09415 ProteinModelPortal:Q8LDK5 SMR:Q8LDK5
STRING:Q8LDK5 PRIDE:Q8LDK5 EnsemblPlants:AT5G27820.1 GeneID:832844
KEGG:ath:AT5G27820 TAIR:At5g27820 HOGENOM:HOG000248743
InParanoid:Q8LDK5 OMA:KMHFTNK PhylomeDB:Q8LDK5
ProtClustDB:CLSN2687140 Genevestigator:Q8LDK5 Uniprot:Q8LDK5
Length = 114
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 60 TKKHITGQIVHN-NGNVVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEI 118
T K + Q++H+ V SAS+ E AL++ + T D+ A S + ++L +R L I +
Sbjct: 26 TNKFVHAQVIHSPTATVACSASSQEKALRETMDITRDVAAASKIGKILGERLLMKDIPAV 85
Query: 119 T 119
T
Sbjct: 86 T 86
>TIGR_CMR|CPS_0617 [details] [associations]
symbol:CPS_0617 "ribosomal protein L18" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861 GO:GO:0006412
GO:GO:0005840 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0003735
GO:GO:0019843 eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881
TIGRFAMs:TIGR00060 HAMAP:MF_01337_B RefSeq:YP_267367.1
ProteinModelPortal:Q488Z7 SMR:Q488Z7 STRING:Q488Z7 GeneID:3520558
KEGG:cps:CPS_0617 PATRIC:21464561 OMA:FRFHGRV
BioCyc:CPSY167879:GI48-704-MONOMER Uniprot:Q488Z7
Length = 117
Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
Identities = 24/88 (27%), Positives = 47/88 (53%)
Query: 32 RLRIARKPQGYHLDRLGREYWHTLYFTTTKKHITGQIVHNNGN-VVVSASTNEWALKKHL 90
RLR A++ + + LG + L T +HI Q++ G+ V+ SAST + + +
Sbjct: 7 RLRRAKRARA-KISELGA---NRLVIFRTPRHIYAQLIAPTGSEVIASASTLDKEVSAQI 62
Query: 91 YNTNDICAYSNLARVLAQRCLETGISEI 118
T ++ A + + + +A+R + GI++I
Sbjct: 63 EKTGNVAAATAVGKAIAERAVAKGITKI 90
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.131 0.401 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 119 119 0.00091 102 3 11 22 0.48 30
29 0.47 32
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 16
No. of states in DFA: 583 (62 KB)
Total size of DFA: 140 KB (2086 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 13.27u 0.12s 13.39t Elapsed: 00:00:01
Total cpu time: 13.27u 0.12s 13.39t Elapsed: 00:00:01
Start: Thu Aug 15 11:07:31 2013 End: Thu Aug 15 11:07:32 2013