RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5246
(119 letters)
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
3fik_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O*
3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O
1vs6_O 2aw4_O 2awb_O 1vt2_O 2i2v_O ...
Length = 116
Score = 46.0 bits (110), Expect = 9e-08
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 60 TKKHITGQIV-HNNGNVVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEI 118
T +HI Q++ N V+V+AST E A+ + L T + A + + + +A+R LE GI ++
Sbjct: 30 TPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDV 89
>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N*
1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N*
1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N*
1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ...
Length = 187
Score = 42.1 bits (99), Expect = 6e-06
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 60 TKKHITGQIVH---NNGNVVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGIS 116
+ KH+ Q+V N + + SA +++ A T ++ + + R E G+
Sbjct: 40 SNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRAQEAGVE 99
Query: 117 EI 118
E
Sbjct: 100 EA 101
>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus
stearothermophilus} SCOP: c.55.4.1
Length = 120
Score = 39.5 bits (93), Expect = 3e-05
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 62 KHITGQIVH-NNGNVVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEI 118
KHI QI+ +VSAST + +TN+I A + ++A+R LE GI ++
Sbjct: 38 KHIYAQIIDDTKSATIVSASTLDKEFGLD--STNNIEAAKKVGELVAKRALEKGIKQV 93
>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus} PDB:
1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S
2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S
2wrj_S 2wrl_S 2wro_S 2wrr_S ...
Length = 112
Score = 38.3 bits (90), Expect = 6e-05
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 62 KHITGQIVH-NNGNVVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEI 118
KHI QI+ G +VSAS+ LK N + R LA++ L GI ++
Sbjct: 33 KHIYAQIIDDEKGVTLVSASSLALKLKG-----NKTEVARQVGRALAEKALALGIKQV 85
>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 161
Score = 38.6 bits (90), Expect = 1e-04
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 62 KHITGQIVH-NNGNVVVSASTNEWALKKHLY--NTNDICAYSNLARVLAQRCLETGISEI 118
KH+ Q++ + + + SAST + ++ + L ++ I + V+A CLE GI+++
Sbjct: 75 KHLYVQVIDDSKMHTLASASTMQKSISEELDYSSSPTIEVAKKVGEVIASACLEKGITKV 134
>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L
1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M*
1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P
Length = 114
Score = 36.4 bits (85), Expect = 3e-04
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 62 KHITGQIVH-NNGNVVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEI 118
KHI QI+ + G + +AS+ K + N + + + LA E GI ++
Sbjct: 36 KHIYAQIIDDSRGQTLAAASSAA---LK---SGNKTDTAAAVGKALAAAAAEKGIKQV 87
>2bsz_A Arylamine N-acetyltransferase 1; acyltransferase, complete
proteome; 2.0A {Rhizobium loti} SCOP: d.3.1.5
Length = 278
Score = 26.1 bits (57), Expect = 2.9
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 31 ERLRIARKPQGYHLDRLGREYWHTLY 56
E RI + L W +LY
Sbjct: 152 EPFRIVEADDHFRLQAAIGGDWRSLY 177
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
PDB: 3izr_Q
Length = 304
Score = 25.8 bits (56), Expect = 4.5
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 56 YFTTTKKHITGQIVH---NNGNVVVSASTNEW 84
Y T K IT QIV+ V+ +A ++E
Sbjct: 53 YRFVTNKDITAQIVYATIAGDIVMAAAYSHEL 84
>1e2t_A NAT, N-hydroxyarylamine O-acetyltransferase; acetyl COA dependent;
2.8A {Salmonella typhimurium} SCOP: d.3.1.5
Length = 284
Score = 25.4 bits (55), Expect = 5.9
Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 31 ERLRIARKPQGYHLDRLGREYWHTLY-FTTTKKHI 64
R+ ++ + L E+W ++Y F +
Sbjct: 150 GEYRLMQEGSTWILQFRHHEHWQSMYCFDLGVQQQ 184
>2vfb_A Arylamine N-acetyltransferase; NAT, acetyl COA, mycobacteria,
actyltransferase; 2.00A {Mycobacterium marinum} PDB:
2vfc_A* 3ltw_A*
Length = 280
Score = 25.0 bits (54), Expect = 6.9
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 31 ERLRIARKPQGYHLDRLGREYWHTLY-FTTTKKHI 64
E R+ + G L + R+ W LY F+T +
Sbjct: 152 EPYRLDDRGDGLVLQAMVRDEWQALYEFSTLTRPQ 186
>1w5r_A Arylamine N-acetyltransferase; acyltransferase; 1.45A
{Mycobacterium smegmatis} SCOP: d.3.1.5 PDB: 1w6f_A*
1gx3_A
Length = 278
Score = 24.9 bits (54), Expect = 7.1
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 31 ERLRIARKPQGYHLDRLGREYWHTLY 56
E R+ R + L R W LY
Sbjct: 155 EPYRLTRHGDDHTLAAQVRGEWQPLY 180
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.131 0.401
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,828,749
Number of extensions: 97367
Number of successful extensions: 282
Number of sequences better than 10.0: 1
Number of HSP's gapped: 278
Number of HSP's successfully gapped: 15
Length of query: 119
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 38
Effective length of database: 4,440,192
Effective search space: 168727296
Effective search space used: 168727296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)