RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5246
         (119 letters)



>d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p)
           {Escherichia coli [TaxId: 562]}
          Length = 113

 Score = 36.8 bits (85), Expect = 1e-04
 Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 53  HTLYFTTTKKHITGQIVH-NNGNVVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCL 111
             L    T +HI  Q++  N   V+V+AST E A+ + L  T +  A + + + +A+R L
Sbjct: 22  TRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERAL 81

Query: 112 ETGISEIT 119
           E GI +++
Sbjct: 82  EKGIKDVS 89


>d2j01s1 c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {Thermus
           thermophilus [TaxId: 274]}
          Length = 86

 Score = 33.5 bits (77), Expect = 0.001
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 6/60 (10%)

Query: 60  TKKHITGQIVH-NNGNVVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEI 118
           + KHI  QI+    G  +VSAS+    LK +            + R LA++ L  GI ++
Sbjct: 9   SLKHIYAQIIDDEKGVTLVSASSLALKLKGN-----KTEVARQVGRALAEKALALGIKQV 63


>d1ovya_ c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 97

 Score = 33.3 bits (76), Expect = 0.001
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 60  TKKHITGQIVH-NNGNVVVSASTNEWALKKHLYNTNDICAYSNLARVLAQRCLETGISEI 118
           + KHI  QI+       +VSAST +        N  +      +  ++A+R LE GI ++
Sbjct: 13  SNKHIYAQIIDDTKSATIVSASTLDKEFGLDSTNNIEAAKK--VGELVAKRALEKGIKQV 70

Query: 119 T 119
            
Sbjct: 71  V 71


>d1w5ra1 d.3.1.5 (A:3-275) Arylamine N-acetyltransferase
           {Mycobacterium smegmatis [TaxId: 1772]}
          Length = 273

 Score = 26.9 bits (59), Expect = 0.62
 Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 31  ERLRIARKPQGYHLDRLGREYWHTLY-FTTTKKHITGQIVHNN 72
           E  R+ R    + L    R  W  LY FTT  +      V + 
Sbjct: 150 EPYRLTRHGDDHTLAAQVRGEWQPLYTFTTEPRPRIDLEVGSW 192


>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma
           (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 78

 Score = 25.6 bits (56), Expect = 0.73
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 87  KKHLYNTNDICAYSNLARVLAQRCLETGISEIT 119
           KK +    D+   S  A VL  +  +  I+E+T
Sbjct: 7   KKIMKLDEDVKMISAEAPVLFAKAAQIFITELT 39


>d1wdpa1 c.1.8.1 (A:6-495) beta-Amylase {Soybean (Glycine max)
           [TaxId: 3847]}
          Length = 490

 Score = 24.8 bits (54), Expect = 3.0
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 7/30 (23%)

Query: 90  LYNTNDICAYSNLARVLAQR-------CLE 112
            YN ND   Y  +AR+L++        CLE
Sbjct: 311 YYNLNDRDGYRPIARMLSRHHAILNFTCLE 340


>d1b1ya_ c.1.8.1 (A:) beta-Amylase {Barley (Hordeum vulgare) [TaxId:
           4513]}
          Length = 500

 Score = 24.8 bits (54), Expect = 3.6
 Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 7/30 (23%)

Query: 90  LYNTNDICAYSNLARVLAQR-------CLE 112
            YN +D   Y  +AR+L +        C E
Sbjct: 310 YYNLHDRDGYRTIARMLKRHRASINFTCAE 339


>d1su0b_ d.224.1.2 (B:) IscU homolog SPy0289 {Streptococcus pyogenes
           [TaxId: 1314]}
          Length = 136

 Score = 24.2 bits (52), Expect = 4.5
 Identities = 13/85 (15%), Positives = 29/85 (34%), Gaps = 9/85 (10%)

Query: 23  HNKNPRNLERLRIARKPQGYHL---DRLGREYWHTLYFTTTKKHITGQIVHNNGNVVVSA 79
           H+K P +  +L      Q  +    D +      +L     +  I       NG  + +A
Sbjct: 12  HSKRPHHHGQLDGVEAVQLNNPTCGDVI------SLTVKFDEDKIEDIAFAGNGCTISTA 65

Query: 80  STNEWALKKHLYNTNDICAYSNLAR 104
           S++         +  +  A +++  
Sbjct: 66  SSSMMTDAVIGKSKEEALALADIFS 90


>d1fa2a_ c.1.8.1 (A:) beta-Amylase {Sweet potato (Ipomoea batatas)
           [TaxId: 4120]}
          Length = 498

 Score = 24.0 bits (52), Expect = 7.2
 Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 7/30 (23%)

Query: 90  LYNTNDICAYSNLARVLAQR-------CLE 112
            YN      Y  +AR+LA+        CLE
Sbjct: 318 FYNVAGRDGYRPIARMLARHHATLNFTCLE 347


>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal
          domain {Ureaplasma urealyticum [TaxId: 2130]}
          Length = 139

 Score = 23.1 bits (49), Expect = 9.4
 Identities = 6/10 (60%), Positives = 7/10 (70%)

Query: 1  MFAKKTTRLL 10
          MFA KT  L+
Sbjct: 11 MFAGKTAELI 20


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.131    0.401 

Gapped
Lambda     K      H
   0.267   0.0678    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 445,511
Number of extensions: 18475
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 18
Length of query: 119
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 45
Effective length of database: 1,391,576
Effective search space: 62620920
Effective search space used: 62620920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)