BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5250
(1102 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
pdb|3SE6|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
Length = 967
Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/324 (31%), Positives = 154/324 (47%), Gaps = 85/324 (26%)
Query: 149 LDDEDRYMAVTQFELTDARRCFPCWDEPAVKAKFSISLSVPNNKVALSNMPVKSESPQPD 208
L E R +AVT FE T AR FPC+DEP KA FSI + + +ALSNMP K ++ + +
Sbjct: 187 LGGETRILAVTDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNMP-KVKTIELE 245
Query: 209 GHRLL-QFETSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASK 267
G L FET+ MSTYLVA +V +F + +S GV V +Y KR Q +AL + K
Sbjct: 246 GGLLEDHFETTVKMSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTHYALQASLK 305
Query: 268 VLPFYKDYFNIAYPLPKIDLVAIPVGHPSEVE---------------------------- 299
+L FY+ YF+I YPL K+DL+AIP P +E
Sbjct: 306 LLDFYEKYFDIYYPLSKLDLIAIPDFAPGAMENWGLITYRETSLLFDPKTSSASDKLWVT 365
Query: 300 ------------------EIFDDISYNKGASIIRMLQKYIGDGKYPIL------LRPSFQ 335
E ++DI N+G + + ++ + YP L L F+
Sbjct: 366 RVIAHELAHQWFGNLVTMEWWNDIWLNEGFA--KYMELIAVNATYPELQFDDYFLNVCFE 423
Query: 336 I--------------PVGHPSEVEEIFDDISYNKGASIIRMLQKYIGD-----GV----- 371
+ P P++++E+FD++SYNKGA I+ ML+ ++G+ G+
Sbjct: 424 VITKDSLNSSRPISKPAETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQYLK 483
Query: 372 -----NSSSDSLWYVPLSFCTQAN 390
N+ +D LW + C +++
Sbjct: 484 KFSYRNAKNDDLWSSLSNSCLESD 507
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
Query: 695 VMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHLWLNEG 754
MENWGL+TYRE LL D + +SA + + V+ HELAHQWFGNLVTMEWW +WLNEG
Sbjct: 335 AMENWGLITYRETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIWLNEG 394
Query: 755 YASFVEFLCVHHLFPEYDIWTQFVTDNLVRALELDALKSSHP 796
+A ++E + V+ +PE + + + D+L SS P
Sbjct: 395 FAKYMELIAVNATYPELQF-DDYFLNVCFEVITKDSLNSSRP 435
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 61/108 (56%), Gaps = 3/108 (2%)
Query: 534 QFETSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYK 593
FET+ MSTYLVA +V +F + +S GV V +Y KR Q +AL + K+L FY+
Sbjct: 252 HFETTVKMSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTHYALQASLKLLDFYE 311
Query: 594 DYFNIAYPLPKIDLVAL---NPGTVGYYRVKYPRETLAQFIPSVEDKS 638
YF+I YPL K+DL+A+ PG + + + RET F P S
Sbjct: 312 KYFDIYYPLSKLDLIAIPDFAPGAMENWGLITYRETSLLFDPKTSSAS 359
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/274 (20%), Positives = 105/274 (38%), Gaps = 71/274 (25%)
Query: 273 KDYFNIAYPLPKIDLVAIPVGHPSEVEEIFDDISYNKGASIIRMLQKYIGDGKYP----- 327
KD N + P+ K P P++++E+FD++SYNKGA I+ ML+ ++G+ K+
Sbjct: 427 KDSLNSSRPISK------PAETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQ 480
Query: 328 ILLRPSFQIP-------------------------------------VGHPSEVEEIFDD 350
L + S++ +G +EV+E+
Sbjct: 481 YLKKFSYRNAKNDDLWSSLSNSCLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKEMMTT 540
Query: 351 ISYNKGASII---------RMLQKYIGDGVNSSSDS--------LWYVPLSFCTQANPSE 393
+ KG ++ R+ Q+ GV LW++PL++ T + S
Sbjct: 541 WTLQKGIPLLVVKQDGCSLRLQQERFLQGVFQEDPEWRALQERYLWHIPLTYSTSS--SN 598
Query: 394 EVFSAEMSTRVTQVTIPDVSPGHWIKLNPGTVGYYRVKYPRETLAQFIPSVEDKS--IPP 451
+ + ++ + +P+ + W+K N + GYY V Y Q I + + P
Sbjct: 599 VIHRHILKSKTDTLDLPEKTS--WVKFNVDSNGYYIVHYEGHGWDQLITQLNQNHTLLRP 656
Query: 452 XXXXXXXXXXXXXAQVGEVSLVEVLKMIQSMTHE 485
G ++L + L M + HE
Sbjct: 657 KDRVGLIHDVFQLVGAGRLTLDKALDMTYYLQHE 690
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 76/145 (52%), Gaps = 4/145 (2%)
Query: 959 YQNSDMQEEKDRISRSFSALKDPELLRKVLDFSM-SDLVRAQDSVFVIISAAQTKTGREL 1017
Y+ S E+++I + S K E L K+++ M +++ Q+ ++ + A+ G++L
Sbjct: 812 YELSMSSAEQNKILYALSTSKHQEKLLKLIELGMEGKVIKTQNLAALLHAIARRPKGQQL 871
Query: 1018 AWDFLKNNYATFTERYKGGL--LGRLVKHTTENFASESHAQEVTEFFTKNPTSWIERTVQ 1075
AWDF++ N+ +++ G + ++ TT +F+S+ QEV FF +
Sbjct: 872 AWDFVRENWTHLLKKFDLGSYDIRMIISGTTAHFSSKDKLQEVKLFFESLEAQGSHLDIF 931
Query: 1076 QSV-ETIRLNSECLKRDGEAVKQFL 1099
Q+V ETI N + L+++ ++ +L
Sbjct: 932 QTVLETITKNIKWLEKNLPTLRTWL 956
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 74/140 (52%), Gaps = 4/140 (2%)
Query: 819 IELYQNSDMQEEKDRISRSFSALKDPELLRKVLDFSM-SDLVRAQDSVFVIISAAQTKTG 877
+E Y+ S E+++I + S K E L K+++ M +++ Q+ ++ + A+ G
Sbjct: 809 LEQYELSMSSAEQNKILYALSTSKHQEKLLKLIELGMEGKVIKTQNLAALLHAIARRPKG 868
Query: 878 RELAWEFLKNNYATFTERYKGGL--LGRLVKHTTENFASESHAQEVTEFFTKNPTSWIER 935
++LAW+F++ N+ +++ G + ++ TT +F+S+ QEV FF
Sbjct: 869 QQLAWDFVRENWTHLLKKFDLGSYDIRMIISGTTAHFSSKDKLQEVKLFFESLEAQGSHL 928
Query: 936 TVQQSV-ETIRLNSECLKRD 954
+ Q+V ETI N + L+++
Sbjct: 929 DIFQTVLETITKNIKWLEKN 948
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
pdb|4E36|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
Length = 967
Score = 142 bits (358), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/322 (31%), Positives = 157/322 (48%), Gaps = 81/322 (25%)
Query: 149 LDDEDRYMAVTQFELTDARRCFPCWDEPAVKAKFSISLSVPNNKVALSNMPVKSESPQPD 208
L E R +AVT FE T AR FPC+DEP KA FSI + + +ALSNMP K ++ + +
Sbjct: 187 LGGETRILAVTDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNMP-KVKTIELE 245
Query: 209 GHRLL-QFETSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASK 267
G L FET+ MSTYLVA +V +F + +S GV V +Y KR Q +AL + K
Sbjct: 246 GGLLEDHFETTVKMSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTHYALQASLK 305
Query: 268 VLPFYKDYFNIAYPLPKIDLVAIPVGHPSEVEE-----------IFD------------- 303
+L FY+ YF+I YPL K+DL+AIP P +E +FD
Sbjct: 306 LLDFYEKYFDIYYPLSKLDLIAIPDFAPGAMENWGLITYRETSLLFDPKTSSASDKLWVT 365
Query: 304 -----DISYNKGASIIRM-----------LQKYIG----DGKYPIL------LRPSFQI- 336
++++ +++ M KY+ + YP L L F++
Sbjct: 366 RVIAHELAHQWFGNLVTMEWWNDIWLKEGFAKYMELIAVNATYPELQFDDYFLNVCFEVI 425
Query: 337 ---------PVGHPSE----VEEIFDDISYNKGASIIRMLQKYIGD-----GV------- 371
P+ P+E ++E+FD++SYNKGA I+ ML+ ++G+ G+
Sbjct: 426 TKDSLNSSRPISKPAETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQYLKKF 485
Query: 372 ---NSSSDSLWYVPLSFCTQAN 390
N+ +D LW + C +++
Sbjct: 486 SYRNAKNDDLWSSLSNSCLESD 507
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Query: 695 VMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHLWLNEG 754
MENWGL+TYRE LL D + +SA + + V+ HELAHQWFGNLVTMEWW +WL EG
Sbjct: 335 AMENWGLITYRETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIWLKEG 394
Query: 755 YASFVEFLCVHHLFPEYDIWTQFVTDNLVRALELDALKSSHP 796
+A ++E + V+ +PE + + + D+L SS P
Sbjct: 395 FAKYMELIAVNATYPELQF-DDYFLNVCFEVITKDSLNSSRP 435
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 61/108 (56%), Gaps = 3/108 (2%)
Query: 534 QFETSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYK 593
FET+ MSTYLVA +V +F + +S GV V +Y KR Q +AL + K+L FY+
Sbjct: 252 HFETTVKMSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTHYALQASLKLLDFYE 311
Query: 594 DYFNIAYPLPKIDLVAL---NPGTVGYYRVKYPRETLAQFIPSVEDKS 638
YF+I YPL K+DL+A+ PG + + + RET F P S
Sbjct: 312 KYFDIYYPLSKLDLIAIPDFAPGAMENWGLITYRETSLLFDPKTSSAS 359
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/274 (20%), Positives = 105/274 (38%), Gaps = 71/274 (25%)
Query: 273 KDYFNIAYPLPKIDLVAIPVGHPSEVEEIFDDISYNKGASIIRMLQKYIGDGKYP----- 327
KD N + P+ K P P++++E+FD++SYNKGA I+ ML+ ++G+ K+
Sbjct: 427 KDSLNSSRPISK------PAETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQ 480
Query: 328 ILLRPSFQIP-------------------------------------VGHPSEVEEIFDD 350
L + S++ +G +EV+E+
Sbjct: 481 YLKKFSYRNAKNDDLWSSLSNSCLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKEMMTT 540
Query: 351 ISYNKGASII---------RMLQKYIGDGVNSSSDS--------LWYVPLSFCTQANPSE 393
+ KG ++ R+ Q+ GV LW++PL++ T + S
Sbjct: 541 WTLQKGIPLLVVKQDGCSLRLQQERFLQGVFQEDPEWRALQERYLWHIPLTYSTSS--SN 598
Query: 394 EVFSAEMSTRVTQVTIPDVSPGHWIKLNPGTVGYYRVKYPRETLAQFIPSVEDKS--IPP 451
+ + ++ + +P+ + W+K N + GYY V Y Q I + + P
Sbjct: 599 VIHRHILKSKTDTLDLPEKTS--WVKFNVDSNGYYIVHYEGHGWDQLITQLNQNHTLLRP 656
Query: 452 XXXXXXXXXXXXXAQVGEVSLVEVLKMIQSMTHE 485
G ++L + L M + HE
Sbjct: 657 KDRVGLIHDVFQLVGAGRLTLDKALDMTYYLQHE 690
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 76/145 (52%), Gaps = 4/145 (2%)
Query: 959 YQNSDMQEEKDRISRSFSALKDPELLRKVLDFSM-SDLVRAQDSVFVIISAAQTKTGREL 1017
Y+ S E+++I + S K E L K+++ M +++ Q+ ++ + A+ G++L
Sbjct: 812 YELSMSSAEQNKILYALSTSKHQEKLLKLIELGMEGKVIKTQNLAALLHAIARRPKGQQL 871
Query: 1018 AWDFLKNNYATFTERYKGGL--LGRLVKHTTENFASESHAQEVTEFFTKNPTSWIERTVQ 1075
AWDF++ N+ +++ G + ++ TT +F+S+ QEV FF +
Sbjct: 872 AWDFVRENWTHLLKKFDLGSYDIRMIISGTTAHFSSKDKLQEVKLFFESLEAQGSHLDIF 931
Query: 1076 QSV-ETIRLNSECLKRDGEAVKQFL 1099
Q+V ETI N + L+++ ++ +L
Sbjct: 932 QTVLETITKNIKWLEKNLPTLRTWL 956
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 74/140 (52%), Gaps = 4/140 (2%)
Query: 819 IELYQNSDMQEEKDRISRSFSALKDPELLRKVLDFSM-SDLVRAQDSVFVIISAAQTKTG 877
+E Y+ S E+++I + S K E L K+++ M +++ Q+ ++ + A+ G
Sbjct: 809 LEQYELSMSSAEQNKILYALSTSKHQEKLLKLIELGMEGKVIKTQNLAALLHAIARRPKG 868
Query: 878 RELAWEFLKNNYATFTERYKGGL--LGRLVKHTTENFASESHAQEVTEFFTKNPTSWIER 935
++LAW+F++ N+ +++ G + ++ TT +F+S+ QEV FF
Sbjct: 869 QQLAWDFVRENWTHLLKKFDLGSYDIRMIISGTTAHFSSKDKLQEVKLFFESLEAQGSHL 928
Query: 936 TVQQSV-ETIRLNSECLKRD 954
+ Q+V ETI N + L+++
Sbjct: 929 DIFQTVLETITKNIKWLEKN 948
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Cleaved Poly-Alanine
pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Substance P
Length = 908
Score = 136 bits (343), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 97/143 (67%), Gaps = 5/143 (3%)
Query: 154 RYMAVTQFELTDARRCFPCWDEPAVKAKFSISLSVPNNKVALSNMPVKSES---PQPDGH 210
+ +A TQ + TDAR+ FPC+DEPA+KA F+I+L PNN ALSNMP K S +
Sbjct: 138 KVLATTQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGSSTPLAEDPNW 197
Query: 211 RLLQFETSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYT-PVGKRE-QGQFALHVASKV 268
+ +FET+P+MSTYL+A +V EF V ET+ +GVL+R++ P E G +AL+V +
Sbjct: 198 SVTEFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPI 257
Query: 269 LPFYKDYFNIAYPLPKIDLVAIP 291
L F+ +++N +YPLPK D +A+P
Sbjct: 258 LNFFANHYNTSYPLPKSDQIALP 280
Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 105/192 (54%), Gaps = 22/192 (11%)
Query: 695 VMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHLWLNEG 754
MENWGLVTYRE LL D Q++S ++ + V+ HELAHQWFGNLVT+ WW LWLNEG
Sbjct: 286 AMENWGLVTYRENALLFDPQSSSISNKERVVTVIAHELAHQWFGNLVTLAWWNDLWLNEG 345
Query: 755 YASFVEFLCVHHLFPEYDIWTQFVTDNLVRALELDALKSSHPTQFVTDNLVRALELDALK 814
+AS+VE+L H P +++ V ++ R + +DAL SSHP L A +
Sbjct: 346 FASYVEYLGADHAEPTWNLKDLIVPGDVYRVMAVDALASSHP-----------LTTPAEE 394
Query: 815 SSHPIELYQNSDMQEEKDRISRSFSALKDPELLRKVLDFSMSDLVRAQDSVFVIISAAQT 874
+ P ++ E D IS S K ++R + +F DL + + ++ A Q
Sbjct: 395 VNTPAQI------SEMFDSISYS----KGASVIRMLSNFLTEDLFKEGLASYLHAFAYQN 444
Query: 875 KTGRELAWEFLK 886
T +L WE L+
Sbjct: 445 TTYLDL-WEHLQ 455
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 65/104 (62%), Gaps = 5/104 (4%)
Query: 534 QFETSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYT-PVGKRE-QGQFALHVASKVLPF 591
+FET+P+MSTYL+A +V EF V ET+ +GVL+R++ P E G +AL+V +L F
Sbjct: 201 EFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPILNF 260
Query: 592 YKDYFNIAYPLPKIDLVAL---NPGTVGYYRVKYPRETLAQFIP 632
+ +++N +YPLPK D +AL N G + + + RE F P
Sbjct: 261 FANHYNTSYPLPKSDQIALPDFNAGAMENWGLVTYRENALLFDP 304
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 73/142 (51%), Gaps = 6/142 (4%)
Query: 960 QNSDMQEEKDRISRSFSALKDPELLRKVLDFSMS-DLVRAQDSVFVIISAAQTKTGRELA 1018
Q + + E D++ + + + LL + L ++++ DL+R QD+ I S A G+ LA
Sbjct: 752 QQAQLVNEADKLRSALACSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLA 811
Query: 1019 WDFLKNNYATFTERYKGG--LLGRLVKHTTENFASESHAQEVTEFFTKNPTSWI---ERT 1073
WDF+++N+ + Y GG L++ T F+SE Q++ +F N R
Sbjct: 812 WDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSSEFELQQLEQFKKNNMDVGFGSGTRA 871
Query: 1074 VQQSVETIRLNSECLKRDGEAV 1095
++Q++E + N + +K + E V
Sbjct: 872 LEQALEKTKANIKWVKENKEVV 893
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 73/142 (51%), Gaps = 6/142 (4%)
Query: 823 QNSDMQEEKDRISRSFSALKDPELLRKVLDFSMS-DLVRAQDSVFVIISAAQTKTGRELA 881
Q + + E D++ + + + LL + L ++++ DL+R QD+ I S A G+ LA
Sbjct: 752 QQAQLVNEADKLRSALACSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLA 811
Query: 882 WEFLKNNYATFTERYKGG--LLGRLVKHTTENFASESHAQEVTEFFTKNPTSWI---ERT 936
W+F+++N+ + Y GG L++ T F+SE Q++ +F N R
Sbjct: 812 WDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSSEFELQQLEQFKKNNMDVGFGSGTRA 871
Query: 937 VQQSVETIRLNSECLKRDGEAL 958
++Q++E + N + +K + E +
Sbjct: 872 LEQALEKTKANIKWVKENKEVV 893
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 93/268 (34%), Gaps = 46/268 (17%)
Query: 292 VGHPSEVEEIFDDISYNKGASIIRMLQKYIGDGKYPILLRPSF----------------- 334
V P+++ E+FD ISY+KGAS+IRML ++ + + L
Sbjct: 395 VNTPAQISEMFDSISYSKGASVIRMLSNFLTEDLFKEGLASYLHAFAYQNTTYLDLWEHL 454
Query: 335 ------QIPVGHPSEVEEIFDDISYNKGASII-------RMLQKYI----GDGVNSSS-- 375
Q + P V I D + G +I + QK+ V SS
Sbjct: 455 QKAVDAQTSIRLPDTVRAIMDRWTLQMGFPVITVDTKTGNISQKHFLLDSESNVTRSSAF 514
Query: 376 DSLWYVPLSFCTQANPSEEVFSAEMSTRVTQVTIPDVSPGHWIKLNPGTVGYYRVKYPRE 435
D LW VP+S + + ++S Q + + W+ LN GY++V Y +
Sbjct: 515 DYLWIVPISSIKNGVMQDHYWLRDVSQ--AQNDLFKTASDDWVLLNVNVTGYFQVNYDED 572
Query: 436 T--LAQFIPSVEDKSIPPXXXXXXXXXXXXXAQVGEVSLVEVLKMIQSMTHEDNYTVWIT 493
+ Q IP A V + L + E Y W
Sbjct: 573 NWRMIQHQLQTNLSVIPVINRAQVIYDSFNLATAHMVPVTLALDNTLFLNGEKEYMPWQA 632
Query: 494 ICNCLQKIDLLLSNTEYHHLFYQFGPVK 521
+ L L+ +E +GP+K
Sbjct: 633 ALSSLSYFSLMFDRSEV------YGPMK 654
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Alanine
pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Bestatin
Length = 909
Score = 136 bits (342), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 97/143 (67%), Gaps = 5/143 (3%)
Query: 154 RYMAVTQFELTDARRCFPCWDEPAVKAKFSISLSVPNNKVALSNMPVKSES---PQPDGH 210
+ +A TQ + TDAR+ FPC+DEPA+KA F+I+L PNN ALSNMP K S +
Sbjct: 139 KVLATTQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGSSTPLAEDPNW 198
Query: 211 RLLQFETSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYT-PVGKRE-QGQFALHVASKV 268
+ +FET+P+MSTYL+A +V EF V ET+ +GVL+R++ P E G +AL+V +
Sbjct: 199 SVTEFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPI 258
Query: 269 LPFYKDYFNIAYPLPKIDLVAIP 291
L F+ +++N +YPLPK D +A+P
Sbjct: 259 LNFFANHYNTSYPLPKSDQIALP 281
Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 105/192 (54%), Gaps = 22/192 (11%)
Query: 695 VMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHLWLNEG 754
MENWGLVTYRE LL D Q++S ++ + V+ HELAHQWFGNLVT+ WW LWLNEG
Sbjct: 287 AMENWGLVTYRENALLFDPQSSSISNKERVVTVIAHELAHQWFGNLVTLAWWNDLWLNEG 346
Query: 755 YASFVEFLCVHHLFPEYDIWTQFVTDNLVRALELDALKSSHPTQFVTDNLVRALELDALK 814
+AS+VE+L H P +++ V ++ R + +DAL SSHP L A +
Sbjct: 347 FASYVEYLGADHAEPTWNLKDLIVPGDVYRVMAVDALASSHP-----------LTTPAEE 395
Query: 815 SSHPIELYQNSDMQEEKDRISRSFSALKDPELLRKVLDFSMSDLVRAQDSVFVIISAAQT 874
+ P ++ E D IS S K ++R + +F DL + + ++ A Q
Sbjct: 396 VNTPAQI------SEMFDSISYS----KGASVIRMLSNFLTEDLFKEGLASYLHAFAYQN 445
Query: 875 KTGRELAWEFLK 886
T +L WE L+
Sbjct: 446 TTYLDL-WEHLQ 456
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 65/104 (62%), Gaps = 5/104 (4%)
Query: 534 QFETSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYT-PVGKRE-QGQFALHVASKVLPF 591
+FET+P+MSTYL+A +V EF V ET+ +GVL+R++ P E G +AL+V +L F
Sbjct: 202 EFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPILNF 261
Query: 592 YKDYFNIAYPLPKIDLVAL---NPGTVGYYRVKYPRETLAQFIP 632
+ +++N +YPLPK D +AL N G + + + RE F P
Sbjct: 262 FANHYNTSYPLPKSDQIALPDFNAGAMENWGLVTYRENALLFDP 305
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 73/142 (51%), Gaps = 6/142 (4%)
Query: 960 QNSDMQEEKDRISRSFSALKDPELLRKVLDFSMS-DLVRAQDSVFVIISAAQTKTGRELA 1018
Q + + E D++ + + + LL + L ++++ DL+R QD+ I S A G+ LA
Sbjct: 753 QQAQLVNEADKLRSALACSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLA 812
Query: 1019 WDFLKNNYATFTERYKGG--LLGRLVKHTTENFASESHAQEVTEFFTKNPTSWI---ERT 1073
WDF+++N+ + Y GG L++ T F+SE Q++ +F N R
Sbjct: 813 WDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSSEFELQQLEQFKKNNMDVGFGSGTRA 872
Query: 1074 VQQSVETIRLNSECLKRDGEAV 1095
++Q++E + N + +K + E V
Sbjct: 873 LEQALEKTKANIKWVKENKEVV 894
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 73/142 (51%), Gaps = 6/142 (4%)
Query: 823 QNSDMQEEKDRISRSFSALKDPELLRKVLDFSMS-DLVRAQDSVFVIISAAQTKTGRELA 881
Q + + E D++ + + + LL + L ++++ DL+R QD+ I S A G+ LA
Sbjct: 753 QQAQLVNEADKLRSALACSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLA 812
Query: 882 WEFLKNNYATFTERYKGG--LLGRLVKHTTENFASESHAQEVTEFFTKNPTSWI---ERT 936
W+F+++N+ + Y GG L++ T F+SE Q++ +F N R
Sbjct: 813 WDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSSEFELQQLEQFKKNNMDVGFGSGTRA 872
Query: 937 VQQSVETIRLNSECLKRDGEAL 958
++Q++E + N + +K + E +
Sbjct: 873 LEQALEKTKANIKWVKENKEVV 894
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 93/268 (34%), Gaps = 46/268 (17%)
Query: 292 VGHPSEVEEIFDDISYNKGASIIRMLQKYIGDGKYPILLRPSF----------------- 334
V P+++ E+FD ISY+KGAS+IRML ++ + + L
Sbjct: 396 VNTPAQISEMFDSISYSKGASVIRMLSNFLTEDLFKEGLASYLHAFAYQNTTYLDLWEHL 455
Query: 335 ------QIPVGHPSEVEEIFDDISYNKGASII-------RMLQKYI----GDGVNSSS-- 375
Q + P V I D + G +I + QK+ V SS
Sbjct: 456 QKAVDAQTSIRLPDTVRAIMDRWTLQMGFPVITVDTKTGNISQKHFLLDSESNVTRSSAF 515
Query: 376 DSLWYVPLSFCTQANPSEEVFSAEMSTRVTQVTIPDVSPGHWIKLNPGTVGYYRVKYPRE 435
D LW VP+S + + ++S Q + + W+ LN GY++V Y +
Sbjct: 516 DYLWIVPISSIKNGVMQDHYWLRDVSQ--AQNDLFKTASDDWVLLNVNVTGYFQVNYDED 573
Query: 436 T--LAQFIPSVEDKSIPPXXXXXXXXXXXXXAQVGEVSLVEVLKMIQSMTHEDNYTVWIT 493
+ Q IP A V + L + E Y W
Sbjct: 574 NWRMIQHQLQTNLSVIPVINRAQVIYDSFNLATAHMVPVTLALDNTLFLNGEKEYMPWQA 633
Query: 494 ICNCLQKIDLLLSNTEYHHLFYQFGPVK 521
+ L L+ +E +GP+K
Sbjct: 634 ALSSLSYFSLMFDRSEV------YGPMK 655
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Poly- Alanine
Length = 908
Score = 136 bits (342), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 97/143 (67%), Gaps = 5/143 (3%)
Query: 154 RYMAVTQFELTDARRCFPCWDEPAVKAKFSISLSVPNNKVALSNMPVKSES---PQPDGH 210
+ +A TQ + TDAR+ FPC+DEPA+KA F+I+L PNN ALSNMP K S +
Sbjct: 138 KVLATTQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGSSTPLAEDPNW 197
Query: 211 RLLQFETSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYT-PVGKRE-QGQFALHVASKV 268
+ +FET+P+MSTYL+A +V EF V ET+ +GVL+R++ P E G +AL+V +
Sbjct: 198 SVTEFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPI 257
Query: 269 LPFYKDYFNIAYPLPKIDLVAIP 291
L F+ +++N +YPLPK D +A+P
Sbjct: 258 LNFFANHYNTSYPLPKSDQIALP 280
Score = 124 bits (311), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 105/192 (54%), Gaps = 22/192 (11%)
Query: 695 VMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHLWLNEG 754
MENWGLVTYRE LL D Q++S ++ + V+ H+LAHQWFGNLVT+ WW LWLNEG
Sbjct: 286 AMENWGLVTYRENALLFDPQSSSISNKERVVTVIAHQLAHQWFGNLVTLAWWNDLWLNEG 345
Query: 755 YASFVEFLCVHHLFPEYDIWTQFVTDNLVRALELDALKSSHPTQFVTDNLVRALELDALK 814
+AS+VE+L H P +++ V ++ R + +DAL SSHP L A +
Sbjct: 346 FASYVEYLGADHAEPTWNLKDLIVPGDVYRVMAVDALASSHP-----------LTTPAEE 394
Query: 815 SSHPIELYQNSDMQEEKDRISRSFSALKDPELLRKVLDFSMSDLVRAQDSVFVIISAAQT 874
+ P ++ E D IS S K ++R + +F DL + + ++ A Q
Sbjct: 395 VNTPAQI------SEMFDSISYS----KGASVIRMLSNFLTEDLFKEGLASYLHAFAYQN 444
Query: 875 KTGRELAWEFLK 886
T +L WE L+
Sbjct: 445 TTYLDL-WEHLQ 455
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 65/104 (62%), Gaps = 5/104 (4%)
Query: 534 QFETSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYT-PVGKRE-QGQFALHVASKVLPF 591
+FET+P+MSTYL+A +V EF V ET+ +GVL+R++ P E G +AL+V +L F
Sbjct: 201 EFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPILNF 260
Query: 592 YKDYFNIAYPLPKIDLVAL---NPGTVGYYRVKYPRETLAQFIP 632
+ +++N +YPLPK D +AL N G + + + RE F P
Sbjct: 261 FANHYNTSYPLPKSDQIALPDFNAGAMENWGLVTYRENALLFDP 304
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 73/142 (51%), Gaps = 6/142 (4%)
Query: 960 QNSDMQEEKDRISRSFSALKDPELLRKVLDFSMS-DLVRAQDSVFVIISAAQTKTGRELA 1018
Q + + E D++ + + + LL + L ++++ DL+R QD+ I S A G+ LA
Sbjct: 752 QQAQLVNEADKLRSALACSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLA 811
Query: 1019 WDFLKNNYATFTERYKGG--LLGRLVKHTTENFASESHAQEVTEFFTKNPTSWI---ERT 1073
WDF+++N+ + Y GG L++ T F+SE Q++ +F N R
Sbjct: 812 WDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSSEFELQQLEQFKKNNMDVGFGSGTRA 871
Query: 1074 VQQSVETIRLNSECLKRDGEAV 1095
++Q++E + N + +K + E V
Sbjct: 872 LEQALEKTKANIKWVKENKEVV 893
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 73/142 (51%), Gaps = 6/142 (4%)
Query: 823 QNSDMQEEKDRISRSFSALKDPELLRKVLDFSMS-DLVRAQDSVFVIISAAQTKTGRELA 881
Q + + E D++ + + + LL + L ++++ DL+R QD+ I S A G+ LA
Sbjct: 752 QQAQLVNEADKLRSALACSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLA 811
Query: 882 WEFLKNNYATFTERYKGG--LLGRLVKHTTENFASESHAQEVTEFFTKNPTSWI---ERT 936
W+F+++N+ + Y GG L++ T F+SE Q++ +F N R
Sbjct: 812 WDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSSEFELQQLEQFKKNNMDVGFGSGTRA 871
Query: 937 VQQSVETIRLNSECLKRDGEAL 958
++Q++E + N + +K + E +
Sbjct: 872 LEQALEKTKANIKWVKENKEVV 893
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 93/268 (34%), Gaps = 46/268 (17%)
Query: 292 VGHPSEVEEIFDDISYNKGASIIRMLQKYIGDGKYPILLRPSF----------------- 334
V P+++ E+FD ISY+KGAS+IRML ++ + + L
Sbjct: 395 VNTPAQISEMFDSISYSKGASVIRMLSNFLTEDLFKEGLASYLHAFAYQNTTYLDLWEHL 454
Query: 335 ------QIPVGHPSEVEEIFDDISYNKGASII-------RMLQKYI----GDGVNSSS-- 375
Q + P V I D + G +I + QK+ V SS
Sbjct: 455 QKAVDAQTSIRLPDTVRAIMDRWTLQMGFPVITVDTKTGNISQKHFLLDSESNVTRSSAF 514
Query: 376 DSLWYVPLSFCTQANPSEEVFSAEMSTRVTQVTIPDVSPGHWIKLNPGTVGYYRVKYPRE 435
D LW VP+S + + ++S Q + + W+ LN GY++V Y +
Sbjct: 515 DYLWIVPISSIKNGVMQDHYWLRDVSQ--AQNDLFKTASDDWVLLNVNVTGYFQVNYDED 572
Query: 436 T--LAQFIPSVEDKSIPPXXXXXXXXXXXXXAQVGEVSLVEVLKMIQSMTHEDNYTVWIT 493
+ Q IP A V + L + E Y W
Sbjct: 573 NWRMIQHQLQTNLSVIPVINRAQVIYDSFNLATAHMVPVTLALDNTLFLNGEKEYMPWQA 632
Query: 494 ICNCLQKIDLLLSNTEYHHLFYQFGPVK 521
+ L L+ +E +GP+K
Sbjct: 633 ALSSLSYFSLMFDRSEV------YGPMK 654
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
Length = 959
Score = 135 bits (341), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 97/143 (67%), Gaps = 5/143 (3%)
Query: 154 RYMAVTQFELTDARRCFPCWDEPAVKAKFSISLSVPNNKVALSNMPVKSES---PQPDGH 210
+ +A TQ + TDAR+ FPC+DEPA+KA F+I+L PNN ALSNMP K S +
Sbjct: 182 KVLATTQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGSSTPLAEDPNW 241
Query: 211 RLLQFETSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYT-PVGKRE-QGQFALHVASKV 268
+ +FET+P+MSTYL+A +V EF V ET+ +GVL+R++ P E G +AL+V +
Sbjct: 242 SVTEFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPI 301
Query: 269 LPFYKDYFNIAYPLPKIDLVAIP 291
L F+ +++N +YPLPK D +A+P
Sbjct: 302 LNFFANHYNTSYPLPKSDQIALP 324
Score = 125 bits (315), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 105/192 (54%), Gaps = 22/192 (11%)
Query: 695 VMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHLWLNEG 754
MENWGLVTYRE LL D Q++S ++ + V+ HELAHQWFGNLVT+ WW LWLNEG
Sbjct: 330 AMENWGLVTYRENALLFDPQSSSISNKERVVTVIAHELAHQWFGNLVTLAWWNDLWLNEG 389
Query: 755 YASFVEFLCVHHLFPEYDIWTQFVTDNLVRALELDALKSSHPTQFVTDNLVRALELDALK 814
+AS+VE+L H P +++ V ++ R + +DAL SSHP L A +
Sbjct: 390 FASYVEYLGADHAEPTWNLKDLIVPGDVYRVMAVDALASSHP-----------LTTPAEE 438
Query: 815 SSHPIELYQNSDMQEEKDRISRSFSALKDPELLRKVLDFSMSDLVRAQDSVFVIISAAQT 874
+ P ++ E D IS S K ++R + +F DL + + ++ A Q
Sbjct: 439 VNTPAQI------SEMFDSISYS----KGASVIRMLSNFLTEDLFKEGLASYLHAFAYQN 488
Query: 875 KTGRELAWEFLK 886
T +L WE L+
Sbjct: 489 TTYLDL-WEHLQ 499
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 65/104 (62%), Gaps = 5/104 (4%)
Query: 534 QFETSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYT-PVGKRE-QGQFALHVASKVLPF 591
+FET+P+MSTYL+A +V EF V ET+ +GVL+R++ P E G +AL+V +L F
Sbjct: 245 EFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPILNF 304
Query: 592 YKDYFNIAYPLPKIDLVAL---NPGTVGYYRVKYPRETLAQFIP 632
+ +++N +YPLPK D +AL N G + + + RE F P
Sbjct: 305 FANHYNTSYPLPKSDQIALPDFNAGAMENWGLVTYRENALLFDP 348
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 73/142 (51%), Gaps = 6/142 (4%)
Query: 960 QNSDMQEEKDRISRSFSALKDPELLRKVLDFSMS-DLVRAQDSVFVIISAAQTKTGRELA 1018
Q + + E D++ + + + LL + L ++++ DL+R QD+ I S A G+ LA
Sbjct: 796 QQAQLVNEADKLRSALACSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLA 855
Query: 1019 WDFLKNNYATFTERYKGG--LLGRLVKHTTENFASESHAQEVTEFFTKNPTSWI---ERT 1073
WDF+++N+ + Y GG L++ T F+SE Q++ +F N R
Sbjct: 856 WDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSSEFELQQLEQFKKNNMDVGFGSGTRA 915
Query: 1074 VQQSVETIRLNSECLKRDGEAV 1095
++Q++E + N + +K + E V
Sbjct: 916 LEQALEKTKANIKWVKENKEVV 937
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 73/142 (51%), Gaps = 6/142 (4%)
Query: 823 QNSDMQEEKDRISRSFSALKDPELLRKVLDFSMS-DLVRAQDSVFVIISAAQTKTGRELA 881
Q + + E D++ + + + LL + L ++++ DL+R QD+ I S A G+ LA
Sbjct: 796 QQAQLVNEADKLRSALACSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLA 855
Query: 882 WEFLKNNYATFTERYKGG--LLGRLVKHTTENFASESHAQEVTEFFTKNPTSWI---ERT 936
W+F+++N+ + Y GG L++ T F+SE Q++ +F N R
Sbjct: 856 WDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSSEFELQQLEQFKKNNMDVGFGSGTRA 915
Query: 937 VQQSVETIRLNSECLKRDGEAL 958
++Q++E + N + +K + E +
Sbjct: 916 LEQALEKTKANIKWVKENKEVV 937
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 93/268 (34%), Gaps = 46/268 (17%)
Query: 292 VGHPSEVEEIFDDISYNKGASIIRMLQKYIGDGKYPILLRPSF----------------- 334
V P+++ E+FD ISY+KGAS+IRML ++ + + L
Sbjct: 439 VNTPAQISEMFDSISYSKGASVIRMLSNFLTEDLFKEGLASYLHAFAYQNTTYLDLWEHL 498
Query: 335 ------QIPVGHPSEVEEIFDDISYNKGASII-------RMLQKYI----GDGVNSSS-- 375
Q + P V I D + G +I + QK+ V SS
Sbjct: 499 QKAVDAQTSIRLPDTVRAIMDRWTLQMGFPVITVDTKTGNISQKHFLLDSESNVTRSSAF 558
Query: 376 DSLWYVPLSFCTQANPSEEVFSAEMSTRVTQVTIPDVSPGHWIKLNPGTVGYYRVKYPRE 435
D LW VP+S + + ++S Q + + W+ LN GY++V Y +
Sbjct: 559 DYLWIVPISSIKNGVMQDHYWLRDVSQ--AQNDLFKTASDDWVLLNVNVTGYFQVNYDED 616
Query: 436 T--LAQFIPSVEDKSIPPXXXXXXXXXXXXXAQVGEVSLVEVLKMIQSMTHEDNYTVWIT 493
+ Q IP A V + L + E Y W
Sbjct: 617 NWRMIQHQLQTNLSVIPVINRAQVIYDSFNLATAHMVPVTLALDNTLFLNGEKEYMPWQA 676
Query: 494 ICNCLQKIDLLLSNTEYHHLFYQFGPVK 521
+ L L+ +E +GP+K
Sbjct: 677 ALSSLSYFSLMFDRSEV------YGPMK 698
>pdb|3MDJ|A Chain A, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|B Chain B, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|C Chain C, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
Length = 921
Score = 125 bits (315), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 60/118 (50%), Positives = 76/118 (64%), Gaps = 1/118 (0%)
Query: 693 SPVMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHLWLN 752
S MENWGL TYRE LL D++ +SA ++ +I + V HELAHQWFGNLVTMEWW LWLN
Sbjct: 280 SGAMENWGLTTYRESALLFDAEKSSASSKLDITMTVAHELAHQWFGNLVTMEWWNDLWLN 339
Query: 753 EGYASFVEFLCVHHLFPEYDIWTQFVTDNLVRALELDALKSSHPTQFVTDNLVRALEL 810
EG+A F+EF+ V PE + F A+E+DAL SSHP +N + E+
Sbjct: 340 EGFAKFMEFVSVSVTHPELKVGDYFF-GKCFDAMEVDALNSSHPVSTPVENPAQIREM 396
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 85/142 (59%)
Query: 150 DDEDRYMAVTQFELTDARRCFPCWDEPAVKAKFSISLSVPNNKVALSNMPVKSESPQPDG 209
+ E R +A TQFE T AR FPC+DEPA KA FSI + +A+SNMP+ +G
Sbjct: 135 EGELRILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVTVAEG 194
Query: 210 HRLLQFETSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVL 269
F+ + MSTYLVA ++ +F+ V + + GV V VY K Q +AL A +L
Sbjct: 195 LIEDHFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTLL 254
Query: 270 PFYKDYFNIAYPLPKIDLVAIP 291
FY+DYF+I YPLPK DL AIP
Sbjct: 255 EFYEDYFSIPYPLPKQDLAAIP 276
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 48/77 (62%)
Query: 534 QFETSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYK 593
F+ + MSTYLVA ++ +F+ V + + GV V VY K Q +AL A +L FY+
Sbjct: 199 HFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTLLEFYE 258
Query: 594 DYFNIAYPLPKIDLVAL 610
DYF+I YPLPK DL A+
Sbjct: 259 DYFSIPYPLPKQDLAAI 275
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 89/212 (41%), Gaps = 63/212 (29%)
Query: 274 DYFNIAYPLPKIDLVAIPVGHPSEVEEIFDDISYNKGASIIRMLQKYIGDGKYPILLRPS 333
D N ++P V+ PV +P+++ E+FDD+SY+KGA I+ ML++Y+ + +
Sbjct: 375 DALNSSHP------VSTPVENPAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQY 428
Query: 334 FQIPVGHPSEVEEIFDDI------------------------------------------ 351
Q ++ E+++D +
Sbjct: 429 LQKHSYKNTKNEDLWDSMASICPTDGVKGMDGFCSRSQHSSSSSHWHQERVDVKTMMNTW 488
Query: 352 SYNKGASII---------RMLQKYIGDGVNSSSDS--LWYVPLSFCTQANPSEEVFSAEM 400
+ +G +I M Q++ G + + D+ LW+VPL+F T + S+ V +
Sbjct: 489 TLQRGFPLITITVRGRNVHMKQEHYMKGSDGAPDTGYLWHVPLTFIT--SKSDMVHRFLL 546
Query: 401 STRVTQVTIPDVSPGHWIKLNPGTVGYYRVKY 432
T+ + +P+ WIK N G GYY V Y
Sbjct: 547 KTKTDVLILPE--EVEWIKFNVGMNGYYIVHY 576
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 76/148 (51%), Gaps = 6/148 (4%)
Query: 959 YQNSDMQEEKDRISRSFSALKDPELLRKVLDFSM-SDLVRAQDSVFVIISAAQTKTGREL 1017
YQ S EK +I + ++ E L+ +LD S D ++ Q+ ++ + G L
Sbjct: 753 YQFSLSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPL 812
Query: 1018 AWDFLKNNYATFTERYKGG--LLGRLVKHTTENFASESHAQEVTEFFT--KNPTSWIERT 1073
AW FL+ N+ ++++ G + +V TT F++ + +EV FF+ K S + R
Sbjct: 813 AWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEEVKGFFSSLKENGSQL-RC 871
Query: 1074 VQQSVETIRLNSECLKRDGEAVKQFLST 1101
VQQ++ETI N + ++ + ++ +L +
Sbjct: 872 VQQTIETIEENIGWMDKNFDKIRVWLQS 899
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 68/131 (51%), Gaps = 6/131 (4%)
Query: 822 YQNSDMQEEKDRISRSFSALKDPELLRKVLDFSM-SDLVRAQDSVFVIISAAQTKTGREL 880
YQ S EK +I + ++ E L+ +LD S D ++ Q+ ++ + G L
Sbjct: 753 YQFSLSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPL 812
Query: 881 AWEFLKNNYATFTERYKGG--LLGRLVKHTTENFASESHAQEVTEFFT--KNPTSWIERT 936
AW+FL+ N+ ++++ G + +V TT F++ + +EV FF+ K S + R
Sbjct: 813 AWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEEVKGFFSSLKENGSQL-RC 871
Query: 937 VQQSVETIRLN 947
VQQ++ETI N
Sbjct: 872 VQQTIETIEEN 882
>pdb|2YD0|A Chain A, Crystal Structure Of The Soluble Domain Of Human
Endoplasmic Reticulum Aminopeptidase 1 Erap1
Length = 897
Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/118 (50%), Positives = 75/118 (63%), Gaps = 1/118 (0%)
Query: 693 SPVMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHLWLN 752
S MENWGL TYRE LL D++ +SA ++ I + V HELAHQWFGNLVTMEWW LWLN
Sbjct: 271 SGAMENWGLTTYRESALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLN 330
Query: 753 EGYASFVEFLCVHHLFPEYDIWTQFVTDNLVRALELDALKSSHPTQFVTDNLVRALEL 810
EG+A F+EF+ V PE + F A+E+DAL SSHP +N + E+
Sbjct: 331 EGFAKFMEFVSVSVTHPELKVGDYFF-GKCFDAMEVDALNSSHPVSTPVENPAQIREM 387
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 85/142 (59%)
Query: 150 DDEDRYMAVTQFELTDARRCFPCWDEPAVKAKFSISLSVPNNKVALSNMPVKSESPQPDG 209
+ E R +A TQFE T AR FPC+DEPA KA FSI + +A+SNMP+ +G
Sbjct: 126 EGELRILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVTVAEG 185
Query: 210 HRLLQFETSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVL 269
F+ + MSTYLVA ++ +F+ V + + GV V VY K Q +AL A +L
Sbjct: 186 LIEDHFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTLL 245
Query: 270 PFYKDYFNIAYPLPKIDLVAIP 291
FY+DYF+I YPLPK DL AIP
Sbjct: 246 EFYEDYFSIPYPLPKQDLAAIP 267
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 48/77 (62%)
Query: 534 QFETSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYK 593
F+ + MSTYLVA ++ +F+ V + + GV V VY K Q +AL A +L FY+
Sbjct: 190 HFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTLLEFYE 249
Query: 594 DYFNIAYPLPKIDLVAL 610
DYF+I YPLPK DL A+
Sbjct: 250 DYFSIPYPLPKQDLAAI 266
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 89/212 (41%), Gaps = 63/212 (29%)
Query: 274 DYFNIAYPLPKIDLVAIPVGHPSEVEEIFDDISYNKGASIIRMLQKYIGDGKYPILLRPS 333
D N ++P V+ PV +P+++ E+FDD+SY+KGA I+ ML++Y+ + +
Sbjct: 366 DALNSSHP------VSTPVENPAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQY 419
Query: 334 FQIPVGHPSEVEEIFDDI------------------------------------------ 351
Q ++ E+++D +
Sbjct: 420 LQKHSYKNTKNEDLWDSMASICPTDGVKGMDGFCSRSQHSSSSSHWHQEGVDVKTMMNTW 479
Query: 352 SYNKGASII---------RMLQKYIGDGVNSSSDS--LWYVPLSFCTQANPSEEVFSAEM 400
+ KG +I M Q++ G + + D+ LW+VPL+F T + S+ V +
Sbjct: 480 TLQKGFPLITITVRGRNVHMKQEHYMKGSDGAPDTGYLWHVPLTFIT--SKSDMVHRFLL 537
Query: 401 STRVTQVTIPDVSPGHWIKLNPGTVGYYRVKY 432
T+ + +P+ WIK N G GYY V Y
Sbjct: 538 KTKTDVLILPE--EVEWIKFNVGMNGYYIVHY 567
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 76/148 (51%), Gaps = 6/148 (4%)
Query: 959 YQNSDMQEEKDRISRSFSALKDPELLRKVLDFSM-SDLVRAQDSVFVIISAAQTKTGREL 1017
YQ S EK +I + ++ E L+ +LD S D ++ Q+ ++ + G L
Sbjct: 744 YQFSLSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPL 803
Query: 1018 AWDFLKNNYATFTERYKGG--LLGRLVKHTTENFASESHAQEVTEFFT--KNPTSWIERT 1073
AW FL+ N+ ++++ G + +V TT F++ + +EV FF+ K S + R
Sbjct: 804 AWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEEVKGFFSSLKENGSQL-RC 862
Query: 1074 VQQSVETIRLNSECLKRDGEAVKQFLST 1101
VQQ++ETI N + ++ + ++ +L +
Sbjct: 863 VQQTIETIEENIGWMDKNFDKIRVWLQS 890
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 68/131 (51%), Gaps = 6/131 (4%)
Query: 822 YQNSDMQEEKDRISRSFSALKDPELLRKVLDFSM-SDLVRAQDSVFVIISAAQTKTGREL 880
YQ S EK +I + ++ E L+ +LD S D ++ Q+ ++ + G L
Sbjct: 744 YQFSLSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPL 803
Query: 881 AWEFLKNNYATFTERYKGG--LLGRLVKHTTENFASESHAQEVTEFFT--KNPTSWIERT 936
AW+FL+ N+ ++++ G + +V TT F++ + +EV FF+ K S + R
Sbjct: 804 AWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEEVKGFFSSLKENGSQL-RC 862
Query: 937 VQQSVETIRLN 947
VQQ++ETI N
Sbjct: 863 VQQTIETIEEN 873
>pdb|3QNF|A Chain A, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|B Chain B, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|C Chain C, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
Length = 954
Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/118 (50%), Positives = 75/118 (63%), Gaps = 1/118 (0%)
Query: 693 SPVMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHLWLN 752
S MENWGL TYRE LL D++ +SA ++ I + V HELAHQWFGNLVTMEWW LWLN
Sbjct: 322 SGAMENWGLTTYRESALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLN 381
Query: 753 EGYASFVEFLCVHHLFPEYDIWTQFVTDNLVRALELDALKSSHPTQFVTDNLVRALEL 810
EG+A F+EF+ V PE + F A+E+DAL SSHP +N + E+
Sbjct: 382 EGFAKFMEFVSVSVTHPELKVGDYFF-GKCFDAMEVDALNSSHPVSTPVENPAQIREM 438
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 85/142 (59%)
Query: 150 DDEDRYMAVTQFELTDARRCFPCWDEPAVKAKFSISLSVPNNKVALSNMPVKSESPQPDG 209
+ E R +A TQFE T AR FPC+DEPA KA FSI + +A+SNMP+ +G
Sbjct: 177 EGELRILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVTVAEG 236
Query: 210 HRLLQFETSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVL 269
F+ + MSTYLVA ++ +F+ V + + GV V VY K Q +AL A +L
Sbjct: 237 LIEDHFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTLL 296
Query: 270 PFYKDYFNIAYPLPKIDLVAIP 291
FY+DYF+I YPLPK DL AIP
Sbjct: 297 EFYEDYFSIPYPLPKQDLAAIP 318
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 48/77 (62%)
Query: 534 QFETSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYK 593
F+ + MSTYLVA ++ +F+ V + + GV V VY K Q +AL A +L FY+
Sbjct: 241 HFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTLLEFYE 300
Query: 594 DYFNIAYPLPKIDLVAL 610
DYF+I YPLPK DL A+
Sbjct: 301 DYFSIPYPLPKQDLAAI 317
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 89/212 (41%), Gaps = 63/212 (29%)
Query: 274 DYFNIAYPLPKIDLVAIPVGHPSEVEEIFDDISYNKGASIIRMLQKYIGDGKYPILLRPS 333
D N ++P V+ PV +P+++ E+FDD+SY+KGA I+ ML++Y+ + +
Sbjct: 417 DALNSSHP------VSTPVENPAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQY 470
Query: 334 FQIPVGHPSEVEEIFDDI------------------------------------------ 351
Q ++ E+++D +
Sbjct: 471 LQKHSYKNTKNEDLWDSMASICPTDGVKGMDGFCSRSQHSSSSSHWHQEGVDVKTMMNTW 530
Query: 352 SYNKGASII---------RMLQKYIGDGVNSSSDS--LWYVPLSFCTQANPSEEVFSAEM 400
+ KG +I M Q++ G + + D+ LW+VPL+F T + S+ V +
Sbjct: 531 TLQKGFPLITITVRGRNVHMKQEHYMKGSDGAPDTGYLWHVPLTFIT--SKSDMVHRFLL 588
Query: 401 STRVTQVTIPDVSPGHWIKLNPGTVGYYRVKY 432
T+ + +P+ WIK N G GYY V Y
Sbjct: 589 KTKTDVLILPE--EVEWIKFNVGMNGYYIVHY 618
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 76/148 (51%), Gaps = 6/148 (4%)
Query: 959 YQNSDMQEEKDRISRSFSALKDPELLRKVLDFSM-SDLVRAQDSVFVIISAAQTKTGREL 1017
YQ S EK +I + ++ E L+ +LD S D ++ Q+ ++ + G L
Sbjct: 795 YQFSLSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPL 854
Query: 1018 AWDFLKNNYATFTERYKGG--LLGRLVKHTTENFASESHAQEVTEFFT--KNPTSWIERT 1073
AW FL+ N+ ++++ G + +V TT F++ + +EV FF+ K S + R
Sbjct: 855 AWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEEVKGFFSSLKENGSQL-RC 913
Query: 1074 VQQSVETIRLNSECLKRDGEAVKQFLST 1101
VQQ++ETI N + ++ + ++ +L +
Sbjct: 914 VQQTIETIEENIGWMDKNFDKIRVWLQS 941
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 22/159 (13%)
Query: 822 YQNSDMQEEKDRISRSFSALKDPELLRKVLDFSM-SDLVRAQDSVFVIISAAQTKTGREL 880
YQ S EK +I + ++ E L+ +LD S D ++ Q+ ++ + G L
Sbjct: 795 YQFSLSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPL 854
Query: 881 AWEFLKNNYATFTERYKGG--LLGRLVKHTTENFASESHAQEVTEFFT--KNPTSWIERT 936
AW+FL+ N+ ++++ G + +V TT F++ + +EV FF+ K S + R
Sbjct: 855 AWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEEVKGFFSSLKENGSQL-RC 913
Query: 937 VQQSVETIR----------------LNSECLKRDGEALY 959
VQQ++ETI L SE L+R E LY
Sbjct: 914 VQQTIETIEENIGWMDKNFDKIRVWLQSEKLERMAENLY 952
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13)
pdb|4FYR|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Bestatin
pdb|4FYS|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Angiotensin
Iv
pdb|4FYT|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Amastatin
Length = 903
Score = 124 bits (311), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/143 (42%), Positives = 92/143 (64%), Gaps = 5/143 (3%)
Query: 154 RYMAVTQFELTDARRCFPCWDEPAVKAKFSISLSVPNNKVALSNMPVKSES---PQPDGH 210
+ +A TQ + DAR+ FPC+DEPA+KA+F+I+L P + ALSNM K S P+
Sbjct: 141 KVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNMLPKGPSTPLPEDPNW 200
Query: 211 RLLQFETSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYT--PVGKREQGQFALHVASKV 268
+ +F T+P MSTYL+A +V EFDYVE+ +S+GVL+R++ G +AL+V +
Sbjct: 201 NVTEFHTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPI 260
Query: 269 LPFYKDYFNIAYPLPKIDLVAIP 291
L F+ +++ YPLPK D + +P
Sbjct: 261 LNFFAGHYDTPYPLPKSDQIGLP 283
Score = 124 bits (310), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 93/149 (62%), Gaps = 10/149 (6%)
Query: 653 ACHGELGPSHLSGSVSSGRLSEHIGYHPTEHSSGCGARVGSP-----VMENWGLVTYREV 707
A HG+ +++G + L+ G++ T + ++G P MENWGLVTYRE
Sbjct: 247 AGHGDYA-LNVTGPI----LNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWGLVTYREN 301
Query: 708 CLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHLWLNEGYASFVEFLCVHHL 767
LL D ++S+ ++ + V+ HELAHQWFGNLVT+EWW LWLNEG+AS+VE+L +
Sbjct: 302 SLLFDPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYA 361
Query: 768 FPEYDIWTQFVTDNLVRALELDALKSSHP 796
P +++ V +++ R + +DAL SSHP
Sbjct: 362 EPTWNLKDLMVLNDVYRVMAVDALASSHP 390
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 64/113 (56%), Gaps = 5/113 (4%)
Query: 525 PQPDGHRLLQFETSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYT--PVGKREQGQFAL 582
P+ + +F T+P MSTYL+A +V EFDYVE+ +S+GVL+R++ G +AL
Sbjct: 195 PEDPNWNVTEFHTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYAL 254
Query: 583 HVASKVLPFYKDYFNIAYPLPKIDLVAL---NPGTVGYYRVKYPRETLAQFIP 632
+V +L F+ +++ YPLPK D + L N G + + + RE F P
Sbjct: 255 NVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWGLVTYRENSLLFDP 307
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 48/72 (66%), Gaps = 2/72 (2%)
Query: 73 EYVGELNDKMKGFYRSKYRSVLHDEDRYMAVTQFCSTDARRCFPCWDEPAVKAKFAISLS 132
E+ GEL D + GFYRS+Y + + +A TQ + DAR+ FPC+DEPA+KA+F I+L
Sbjct: 117 EFEGELADDLAGFYRSEYME--GNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLI 174
Query: 133 VPSSKVALSNMV 144
P ALSNM+
Sbjct: 175 HPKDLTALSNML 186
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 78/148 (52%), Gaps = 6/148 (4%)
Query: 959 YQNSDMQEEKDRISRSFSALKDPELLRKVLDFSMS-DLVRAQDSVFVIISAAQTKTGREL 1017
++N+ + E D++ + + K+ +L + L ++++ DL+R QD+ IIS G+ L
Sbjct: 752 FRNATLVNEADKLRAALACSKELWILNRYLSYTLNPDLIRKQDATSTIISITNNVIGQGL 811
Query: 1018 AWDFLKNNYATFTERYKGG--LLGRLVKHTTENFASESHAQEVTEFFTKNPTSWI---ER 1072
WDF+++N+ Y GG L++ T F++E Q++ +F N + R
Sbjct: 812 VWDFVQSNWKKLFNDYGGGSFSFSNLIQAVTRRFSTEYELQQLEQFKKDNEETGFGSGTR 871
Query: 1073 TVQQSVETIRLNSECLKRDGEAVKQFLS 1100
++Q++E + N + +K + E V Q+ +
Sbjct: 872 ALEQALEKTKANIKWVKENKEVVLQWFT 899
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 77/147 (52%), Gaps = 6/147 (4%)
Query: 820 ELYQNSDMQEEKDRISRSFSALKDPELLRKVLDFSMS-DLVRAQDSVFVIISAAQTKTGR 878
E ++N+ + E D++ + + K+ +L + L ++++ DL+R QD+ IIS G+
Sbjct: 750 EQFRNATLVNEADKLRAALACSKELWILNRYLSYTLNPDLIRKQDATSTIISITNNVIGQ 809
Query: 879 ELAWEFLKNNYATFTERYKGG--LLGRLVKHTTENFASESHAQEVTEFFTKNPTSWI--- 933
L W+F+++N+ Y GG L++ T F++E Q++ +F N +
Sbjct: 810 GLVWDFVQSNWKKLFNDYGGGSFSFSNLIQAVTRRFSTEYELQQLEQFKKDNEETGFGSG 869
Query: 934 ERTVQQSVETIRLNSECLKRDGEALYQ 960
R ++Q++E + N + +K + E + Q
Sbjct: 870 TRALEQALEKTKANIKWVKENKEVVLQ 896
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/271 (19%), Positives = 102/271 (37%), Gaps = 46/271 (16%)
Query: 289 AIPVGHPSEVEEIFDDISYNKGASIIRMLQKYIGDGKYP-----------------ILLR 331
A + P+++ E+FD ISY+KGAS++RML ++ + + + L
Sbjct: 395 ASEINTPAQISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLW 454
Query: 332 PSFQIPVGH-----PSEVEEIFDDISYNKGASIIRM--------LQKYIGDGVN-----S 373
Q V + P+ V +I + + G +I + + ++ D + S
Sbjct: 455 DHLQEAVNNRSIQLPTTVRDIMNRWTLQMGFPVITVDTSTGTLSQEHFLLDPDSNVTRPS 514
Query: 374 SSDSLWYVPLSFCTQANPSEEVFSAEMSTRVTQVTIPDVSPGHWIKLNPGTVGYYRVKYP 433
+ +W VP++ ++ + ++ Q + S W+ LN GYYRV Y
Sbjct: 515 EFNYVWIVPITSIRDGRQQQDYWLIDVR---AQNDLFSTSGNEWVLLNLNVTGYYRVNYD 571
Query: 434 RETLAQFIPSVE--DKSIPPXXXXXXXXXXXXXAQVGEVSLVEVLKMIQSMTHEDNYTVW 491
E + ++ +IP A +V + L + E Y W
Sbjct: 572 EENWRKIQTQLQRDHSAIPVINRAQIINDAFNLASAHKVPVTLALNNTLFLIEERQYMPW 631
Query: 492 ITICNCLQKIDLLLSNTEYHHLFYQFGPVKS 522
+ L L+ +E +GP+K+
Sbjct: 632 EAALSSLSYFKLMFDRSEV------YGPMKN 656
>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
pdb|3Q7J|B Chain B, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
Length = 780
Score = 120 bits (301), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 73/107 (68%), Gaps = 1/107 (0%)
Query: 692 GSPVMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHLWL 751
G+ MENWG +T+RE+ + + ++N++ ++N A V+ HE+AHQWFG+LVTM+WW LWL
Sbjct: 228 GAGAMENWGAITFREIYMDI-AENSAVTVKRNSATVIAHEIAHQWFGDLVTMKWWNDLWL 286
Query: 752 NEGYASFVEFLCVHHLFPEYDIWTQFVTDNLVRALELDALKSSHPTQ 798
NE +A+F+ + + LFPE+ W F AL D+LK++HP +
Sbjct: 287 NESFATFMSYKTMDTLFPEWSFWGDFFVSRTSGALRSDSLKNTHPIE 333
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/277 (30%), Positives = 131/277 (47%), Gaps = 69/277 (24%)
Query: 156 MAVTQFELTDARRCFPCWDEPAVKAKFSISLSVPNNKVALSNMPVKSESPQPDGHRLLQF 215
M T F+ TDARR FPC D PA KA F+I++ + + A+SNMP K + ++++F
Sbjct: 95 MITTHFQATDARRMFPCVDHPAYKAVFAITVVIDKDYDAISNMPPK--RIEVSERKVVEF 152
Query: 216 ETSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDY 275
+ +P MSTYL+ V +G+F Y E D L+ K + ++ L +A K + FY++Y
Sbjct: 153 QDTPRMSTYLLYVGIGKFRYEYEKYRDIDLILASL---KDIRSKYPLDMARKSVEFYENY 209
Query: 276 FNIAYPLPKIDLVAIPVGHPSEVE--------EIFDDISYNKGASIIR---------MLQ 318
F I Y LPK+ L+++P +E EI+ DI+ N ++ R +
Sbjct: 210 FGIPYALPKMHLISVPEFGAGAMENWGAITFREIYMDIAENSAVTVKRNSATVIAHEIAH 269
Query: 319 KYIGD---GKY--PILLRPSF----------------------------------QIPVG 339
++ GD K+ + L SF +
Sbjct: 270 QWFGDLVTMKWWNDLWLNESFATFMSYKTMDTLFPEWSFWGDFFVSRTSGALRSDSLKNT 329
Query: 340 HPSEVE--------EIFDDISYNKGASIIRMLQKYIG 368
HP EV+ +IFD+ISY KGASI+RM++ Y G
Sbjct: 330 HPIEVDVRDPDEISQIFDEISYGKGASILRMIEDYAG 366
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 530 HRLLQFETSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVL 589
++++F+ +P MSTYL+ V +G+F Y E D L+ K + ++ L +A K +
Sbjct: 147 RKVVEFQDTPRMSTYLLYVGIGKFRYEYEKYRDIDLILASL---KDIRSKYPLDMARKSV 203
Query: 590 PFYKDYFNIAYPLPKIDLVAL 610
FY++YF I Y LPK+ L+++
Sbjct: 204 EFYENYFGIPYALPKMHLISV 224
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 62/172 (36%), Gaps = 58/172 (33%)
Query: 335 QIPVGHPSEVEEIFDDISYNKGASIIRMLQKYIG-----DGV----------NSSSDSLW 379
++ V P E+ +IFD+ISY KGASI+RM++ Y G G+ N+ LW
Sbjct: 333 EVDVRDPDEISQIFDEISYGKGASILRMIEDYAGYEEFRKGISKYLNDHKFGNAEGSDLW 392
Query: 380 YV-------PLSFCTQ---ANPSEEVFSAEMSTRV-----TQVTIPDVSPGHW------- 417
P+ + NP V + + R T+ + G W
Sbjct: 393 TAIEDVSGKPVKRVMEYWIKNPGYPVIKLKRNGRKITMYQTRFLLNGEEEGRWPVPVNIK 452
Query: 418 ---------------------IKLNPGTVGYYRVKYPRETLAQFIPSVEDKS 448
IK+N + G+YRV Y T + + D S
Sbjct: 453 KKDGVERILLEDEASIEADGLIKINADSAGFYRVLYDDATFSDVMGHYRDLS 504
>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3
From Thermoplasma Acidophilum, A Zinc Aminopeptidase In
Three Different Conformations
pdb|1Z5H|A Chain A, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
pdb|1Z5H|B Chain B, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
Length = 780
Score = 120 bits (300), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 73/107 (68%), Gaps = 1/107 (0%)
Query: 692 GSPVMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHLWL 751
G+ MENWG +T+RE+ + + ++N++ ++N A V+ HE+AHQWFG+LVTM+WW LWL
Sbjct: 228 GAGAMENWGAITFREIYMDI-AENSAVTVKRNSANVIAHEIAHQWFGDLVTMKWWNDLWL 286
Query: 752 NEGYASFVEFLCVHHLFPEYDIWTQFVTDNLVRALELDALKSSHPTQ 798
NE +A+F+ + + LFPE+ W F AL D+LK++HP +
Sbjct: 287 NESFATFMSYKTMDTLFPEWSFWGDFFVSRTSGALRSDSLKNTHPIE 333
Score = 113 bits (283), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 86/277 (31%), Positives = 131/277 (47%), Gaps = 69/277 (24%)
Query: 156 MAVTQFELTDARRCFPCWDEPAVKAKFSISLSVPNNKVALSNMPVKSESPQPDGHRLLQF 215
M T FE TDARR FPC D PA KA F+I++ + + A+SNMP K + ++++F
Sbjct: 95 MITTHFEATDARRMFPCVDHPAYKAVFAITVVIDKDYDAISNMPPK--RIEVSERKVVEF 152
Query: 216 ETSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDY 275
+ +P MSTYL+ V +G+F Y E D L+ K + ++ L +A K + FY++Y
Sbjct: 153 QDTPRMSTYLLYVGIGKFRYEYEKYRDIDLILASL---KDIRSKYPLDMARKSVEFYENY 209
Query: 276 FNIAYPLPKIDLVAIPVGHPSEVE--------EIFDDISYNKGASIIR---------MLQ 318
F I Y LPK+ L+++P +E EI+ DI+ N ++ R +
Sbjct: 210 FGIPYALPKMHLISVPEFGAGAMENWGAITFREIYMDIAENSAVTVKRNSANVIAHEIAH 269
Query: 319 KYIGD---GKY--PILLRPSF----------------------------------QIPVG 339
++ GD K+ + L SF +
Sbjct: 270 QWFGDLVTMKWWNDLWLNESFATFMSYKTMDTLFPEWSFWGDFFVSRTSGALRSDSLKNT 329
Query: 340 HPSEVE--------EIFDDISYNKGASIIRMLQKYIG 368
HP EV+ +IFD+ISY KGASI+RM++ Y G
Sbjct: 330 HPIEVDVRDPDEISQIFDEISYGKGASILRMIEDYAG 366
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 530 HRLLQFETSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVL 589
++++F+ +P MSTYL+ V +G+F Y E D L+ K + ++ L +A K +
Sbjct: 147 RKVVEFQDTPRMSTYLLYVGIGKFRYEYEKYRDIDLILASL---KDIRSKYPLDMARKSV 203
Query: 590 PFYKDYFNIAYPLPKIDLVAL 610
FY++YF I Y LPK+ L+++
Sbjct: 204 EFYENYFGIPYALPKMHLISV 224
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 62/172 (36%), Gaps = 58/172 (33%)
Query: 335 QIPVGHPSEVEEIFDDISYNKGASIIRMLQKYIG-----DGV----------NSSSDSLW 379
++ V P E+ +IFD+ISY KGASI+RM++ Y G G+ N+ LW
Sbjct: 333 EVDVRDPDEISQIFDEISYGKGASILRMIEDYAGYEEFRKGISKYLNDHKFGNAEGSDLW 392
Query: 380 YV-------PLSFCTQ---ANPSEEVFSAEMSTRV-----TQVTIPDVSPGHW------- 417
P+ + NP V + + R T+ + G W
Sbjct: 393 TAIEDVSGKPVKRVMEYWIKNPGYPVIKLKRNGRKITMYQTRFLLNGEEEGRWPVPVNIK 452
Query: 418 ---------------------IKLNPGTVGYYRVKYPRETLAQFIPSVEDKS 448
IK+N + G+YRV Y T + + D S
Sbjct: 453 KKDGVERILLEDEASIEADGLIKINADSAGFYRVLYDDATFSDVMGHYRDLS 504
>pdb|3EBI|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With The Phosphinate Dipeptide Analog
Length = 890
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 17/177 (9%)
Query: 124 KAKFAISLSV---PSSKVALSNMVRIAILDDEDRYMAVTQFELTDARRCFPCWDEPAVKA 180
K+KFA S V P + AL+ + + + + V+Q E T RR D P + A
Sbjct: 91 KSKFAFSSEVIIHPETNYALTGLYK-------SKNIIVSQCEATGFRRITFFIDRPDMMA 143
Query: 181 KFSISLSVPNNK--VALSNMPVKSESPQPDGHRLLQFETSPIMSTYLVAVVVGEFD---- 234
K+ ++++ K V LSN +E P G +F P+ YL AVV G+
Sbjct: 144 KYDVTVTADKEKYPVLLSNGDKVNEFEIPGGRHGARFNDPPLKPCYLFAVVAGDLKHLSA 203
Query: 235 -YVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAI 290
Y+ + + V + V++ + Q+AL K + F +DYF + Y L +++LVA+
Sbjct: 204 TYITKYTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAV 260
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 54/111 (48%), Gaps = 14/111 (12%)
Query: 695 VMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHLWLNEG 754
MEN GL + LL +N+ + I VVGHE HQ+ GN VT+ W L L EG
Sbjct: 267 AMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEG 326
Query: 755 YASFVEFLCVH--HLFPE---YDIWTQFVTDNLVRALEL--DALKSSHPTQ 798
L VH +LF E + T+ +L+R+++ D+ SHP +
Sbjct: 327 -------LTVHRENLFSEEMTKTVTTRLSHVDLLRSVQFLEDSSPLSHPIR 370
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 492 ITICNCLQKIDLLLSNTEYHHLFYQFGPVKSESPQPDGHRLLQFETSPIMSTYLVAVVVG 551
+T+ +K +LLSN G +E P G +F P+ YL AVV G
Sbjct: 147 VTVTADKEKYPVLLSN----------GDKVNEFEIPGGRHGARFNDPPLKPCYLFAVVAG 196
Query: 552 EFD-----YVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKID 606
+ Y+ + + V + V++ + Q+AL K + F +DYF + Y L +++
Sbjct: 197 DLKHLSATYITKYTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLEYDLSRLN 256
Query: 607 LVALNPGTVG 616
LVA++ VG
Sbjct: 257 LVAVSDFNVG 266
>pdb|3EBG|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
pdb|3EBH|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With Bestatin
Length = 889
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 17/177 (9%)
Query: 124 KAKFAISLSV---PSSKVALSNMVRIAILDDEDRYMAVTQFELTDARRCFPCWDEPAVKA 180
K+KFA S V P + AL+ + + + + V+Q E T RR D P + A
Sbjct: 90 KSKFAFSSEVIIHPETNYALTGLYK-------SKNIIVSQCEATGFRRITFFIDRPDMMA 142
Query: 181 KFSISLSVPNNK--VALSNMPVKSESPQPDGHRLLQFETSPIMSTYLVAVVVGEFD---- 234
K+ ++++ K V LSN +E P G +F P+ YL AVV G+
Sbjct: 143 KYDVTVTADKEKYPVLLSNGDKVNEFEIPGGRHGARFNDPPLKPCYLFAVVAGDLKHLSA 202
Query: 235 -YVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAI 290
Y+ + + V + V++ + Q+AL K + F +DYF + Y L +++LVA+
Sbjct: 203 TYITKYTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAV 259
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 54/111 (48%), Gaps = 14/111 (12%)
Query: 695 VMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHLWLNEG 754
MEN GL + LL +N+ + I VVGHE HQ+ GN VT+ W L L EG
Sbjct: 266 AMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEG 325
Query: 755 YASFVEFLCVH--HLFPE---YDIWTQFVTDNLVRALEL--DALKSSHPTQ 798
L VH +LF E + T+ +L+R+++ D+ SHP +
Sbjct: 326 -------LTVHRENLFSEEMTKTVTTRLSHVDLLRSVQFLEDSSPLSHPIR 369
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 492 ITICNCLQKIDLLLSNTEYHHLFYQFGPVKSESPQPDGHRLLQFETSPIMSTYLVAVVVG 551
+T+ +K +LLSN G +E P G +F P+ YL AVV G
Sbjct: 146 VTVTADKEKYPVLLSN----------GDKVNEFEIPGGRHGARFNDPPLKPCYLFAVVAG 195
Query: 552 EFD-----YVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKID 606
+ Y+ + + V + V++ + Q+AL K + F +DYF + Y L +++
Sbjct: 196 DLKHLSATYITKYTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLEYDLSRLN 255
Query: 607 LVALNPGTVG 616
LVA++ VG
Sbjct: 256 LVAVSDFNVG 265
>pdb|3Q43|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 15
pdb|3Q44|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 16
Length = 891
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 17/177 (9%)
Query: 124 KAKFAISLSV---PSSKVALSNMVRIAILDDEDRYMAVTQFELTDARRCFPCWDEPAVKA 180
K+KFA S V P + AL+ + + + + V+Q E T RR D P + A
Sbjct: 91 KSKFAFSSEVIIHPETNYALTGLYK-------SKNIIVSQCEATGFRRITFFIDRPDMMA 143
Query: 181 KFSISLSVPNNK--VALSNMPVKSESPQPDGHRLLQFETSPIMSTYLVAVVVGEFD---- 234
K+ ++++ K V LSN +E P G +F P+ YL AVV G+
Sbjct: 144 KYDVTVTADKEKYPVLLSNGDKVNEFEIPGGRHGARFNDPPLKPCYLFAVVAGDLKHLSA 203
Query: 235 -YVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAI 290
Y+ + + V + V++ + Q+AL K + F +DYF + Y L +++LVA+
Sbjct: 204 TYITKYTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAV 260
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 54/111 (48%), Gaps = 14/111 (12%)
Query: 695 VMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHLWLNEG 754
MEN GL + LL +N+ + I VVGHE HQ+ GN VT+ W L L EG
Sbjct: 267 AMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEG 326
Query: 755 YASFVEFLCVH--HLFPE---YDIWTQFVTDNLVRALEL--DALKSSHPTQ 798
L VH +LF E + T+ +L+R+++ D+ SHP +
Sbjct: 327 -------LTVHRENLFSEEMTKTVTTRLSHVDLLRSVQFLEDSSPLSHPIR 370
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 492 ITICNCLQKIDLLLSNTEYHHLFYQFGPVKSESPQPDGHRLLQFETSPIMSTYLVAVVVG 551
+T+ +K +LLSN G +E P G +F P+ YL AVV G
Sbjct: 147 VTVTADKEKYPVLLSN----------GDKVNEFEIPGGRHGARFNDPPLKPCYLFAVVAG 196
Query: 552 EFD-----YVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKID 606
+ Y+ + + V + V++ + Q+AL K + F +DYF + Y L +++
Sbjct: 197 DLKHLSATYITKYTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLEYDLSRLN 256
Query: 607 LVALNPGTVG 616
LVA++ VG
Sbjct: 257 LVAVSDFNVG 266
>pdb|3T8V|A Chain A, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
Length = 895
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 17/177 (9%)
Query: 124 KAKFAISLSV---PSSKVALSNMVRIAILDDEDRYMAVTQFELTDARRCFPCWDEPAVKA 180
K+KFA S V P + AL+ + + + + V+Q E T RR D P + A
Sbjct: 90 KSKFAFSSEVIIHPETNYALTGLYK-------SKNIIVSQCEATGFRRITFFIDRPDMMA 142
Query: 181 KFSISLSVPNNK--VALSNMPVKSESPQPDGHRLLQFETSPIMSTYLVAVVVGEFD---- 234
K+ ++++ K V LSN +E P G +F P+ YL AVV G+
Sbjct: 143 KYDVTVTADKEKYPVLLSNGDKVNEFEIPGGRHGARFNDPPLKPCYLFAVVAGDLKHLSA 202
Query: 235 -YVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAI 290
Y+ + + V + V++ + Q+AL K + F +DYF + Y L +++LVA+
Sbjct: 203 TYITKYTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAV 259
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 54/111 (48%), Gaps = 14/111 (12%)
Query: 695 VMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHLWLNEG 754
MEN GL + LL +N+ + I VVGHE HQ+ GN VT+ W L L EG
Sbjct: 266 AMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEG 325
Query: 755 YASFVEFLCVH--HLFPE---YDIWTQFVTDNLVRALEL--DALKSSHPTQ 798
L VH +LF E + T+ +L+R+++ D+ SHP +
Sbjct: 326 -------LTVHRENLFSEEMTKTVTTRLSHVDLLRSVQFLEDSSPLSHPIR 369
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 492 ITICNCLQKIDLLLSNTEYHHLFYQFGPVKSESPQPDGHRLLQFETSPIMSTYLVAVVVG 551
+T+ +K +LLSN G +E P G +F P+ YL AVV G
Sbjct: 146 VTVTADKEKYPVLLSN----------GDKVNEFEIPGGRHGARFNDPPLKPCYLFAVVAG 195
Query: 552 EFD-----YVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKID 606
+ Y+ + + V + V++ + Q+AL K + F +DYF + Y L +++
Sbjct: 196 DLKHLSATYITKYTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLEYDLSRLN 255
Query: 607 LVALNPGTVG 616
LVA++ VG
Sbjct: 256 LVAVSDFNVG 265
>pdb|3CIA|A Chain A, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|B Chain B, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|C Chain C, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|D Chain D, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
Length = 605
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 727 VVGHELAHQWFGNLVTMEWWTHLWLNEGYASFVEFLCVHHLF 768
++ HELAH W GNLVT E W LWLNEG+ S+VE + +F
Sbjct: 297 LIAHELAHSWSGNLVTNESWRDLWLNEGFTSYVENRIMEAVF 338
>pdb|3RJO|A Chain A, Crystal Structure Of Erap1 Peptide Binding Domain
Length = 419
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 76/148 (51%), Gaps = 6/148 (4%)
Query: 959 YQNSDMQEEKDRISRSFSALKDPELLRKVLDFSM-SDLVRAQDSVFVIISAAQTKTGREL 1017
YQ S EK +I + ++ E L+ +LD S D ++ Q+ ++ + G L
Sbjct: 261 YQFSLSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPL 320
Query: 1018 AWDFLKNNYATFTERYKGG--LLGRLVKHTTENFASESHAQEVTEFFT--KNPTSWIERT 1073
AW FL+ N+ ++++ G + +V TT F++ + +EV FF+ K S + R
Sbjct: 321 AWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEEVKGFFSSLKENGSQL-RC 379
Query: 1074 VQQSVETIRLNSECLKRDGEAVKQFLST 1101
VQQ++ETI N + ++ + ++ +L +
Sbjct: 380 VQQTIETIEENIGWMDKNFDKIRVWLQS 407
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 68/131 (51%), Gaps = 6/131 (4%)
Query: 822 YQNSDMQEEKDRISRSFSALKDPELLRKVLDFSM-SDLVRAQDSVFVIISAAQTKTGREL 880
YQ S EK +I + ++ E L+ +LD S D ++ Q+ ++ + G L
Sbjct: 261 YQFSLSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPL 320
Query: 881 AWEFLKNNYATFTERYKGG--LLGRLVKHTTENFASESHAQEVTEFFT--KNPTSWIERT 936
AW+FL+ N+ ++++ G + +V TT F++ + +EV FF+ K S + R
Sbjct: 321 AWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEEVKGFFSSLKENGSQL-RC 379
Query: 937 VQQSVETIRLN 947
VQQ++ETI N
Sbjct: 380 VQQTIETIEEN 390
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 360 IRMLQKYIGDGVNSSSDS--LWYVPLSFCTQANPSEEVFSAEMSTRVTQVTIPDVSPGHW 417
+ M Q++ G + + D+ LW+VPL+F T + S+ V + T+ + +P+ W
Sbjct: 14 VHMKQEHYMKGSDGAPDTGYLWHVPLTFIT--SKSDMVHRFLLKTKTDVLILPE--EVEW 69
Query: 418 IKLNPGTVGYYRVKY 432
IK N G GYY V Y
Sbjct: 70 IKFNVGMNGYYIVHY 84
>pdb|2XQ0|A Chain A, Structure Of Yeast Lta4 Hydrolase In Complex With Bestatin
Length = 632
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 718 AITRQNIALVVGHELAHQWFGNLVTMEWWTHLWLNEGYASFVE 760
A R NI V+ HELAH W GNLVT W H WLNEG+ ++E
Sbjct: 290 AHDRSNID-VIAHELAHSWSGNLVTNCSWNHFWLNEGWTVYLE 331
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 159 TQFELTDARRCFPCWDEPAVKAKFSISLSVPNNKVALSNMPVKSESPQPDGHRLLQFETS 218
+Q E AR FPC+D P+VK+ F+ S+ P V S + ++ S + +R FE
Sbjct: 144 SQLEAIHARSLFPCFDTPSVKSTFTASIESP-LPVVFSGIRIEDTSKDTNIYR---FEQK 199
Query: 219 PIMSTYLVAVVVGEF 233
+ YL+ + G+
Sbjct: 200 VPIPAYLIGIASGDL 214
Score = 33.1 bits (74), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 104 TQFCSTDARRCFPCWDEPAVKAKFAISLSVP 134
+Q + AR FPC+D P+VK+ F S+ P
Sbjct: 144 SQLEAIHARSLFPCFDTPSVKSTFTASIESP 174
>pdb|2XPY|A Chain A, Structure Of Native Leukotriene A4 Hydrolase From
Saccharomyces Cerevisiae
pdb|2XPZ|A Chain A, Structure Of Native Yeast Lta4 Hydrolase
Length = 632
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 718 AITRQNIALVVGHELAHQWFGNLVTMEWWTHLWLNEGYASFVE 760
A R NI V+ HELAH W GNLVT W H WLNEG+ ++E
Sbjct: 290 AHDRSNID-VIAHELAHSWSGNLVTNCSWNHFWLNEGWTVYLE 331
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 159 TQFELTDARRCFPCWDEPAVKAKFSISLSVPNNKVALSNMPVKSESPQPDGHRLLQFETS 218
+Q E AR FPC+D P+VK+ F+ S+ P V S + ++ S + +R FE
Sbjct: 144 SQLEAIHARSLFPCFDTPSVKSTFTASIESP-LPVVFSGIRIEDTSKDTNIYR---FEQK 199
Query: 219 PIMSTYLVAVVVGEF 233
+ YL+ + G+
Sbjct: 200 VPIPAYLIGIASGDL 214
Score = 33.1 bits (74), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 104 TQFCSTDARRCFPCWDEPAVKAKFAISLSVP 134
+Q + AR FPC+D P+VK+ F S+ P
Sbjct: 144 SQLEAIHARSLFPCFDTPSVKSTFTASIESP 174
>pdb|3U9W|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Sc57461a
Length = 608
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 722 QNIALVVGHELAHQWFGNLVTMEWWTHLWLNEGYASFVEFLCVHHLFPE 770
++++ V+ HE++H W GNLVT + W H WLNEG+ ++E LF E
Sbjct: 285 KSLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGE 333
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 7/139 (5%)
Query: 159 TQFELTDARRCFPCWDEPAVKAKFSISLSVPNNKVALSNMPVKSESPQPD--GHRLLQFE 216
+Q + R PC D P+VK ++ +SVP VAL + E+P P+ ++ +F
Sbjct: 131 SQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYKFI 190
Query: 217 TSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYF 276
+ YL+A+VVG E+ G V++ + E+ + +L +D
Sbjct: 191 QKVPIPCYLIALVVGAL----ESRQIGPRTLVWSEKEQVEKSAYEFSETESMLKIAED-L 245
Query: 277 NIAYPLPKIDLVAIPVGHP 295
Y + DL+ +P P
Sbjct: 246 GGPYVWGQYDLLVLPPSFP 264
Score = 33.1 bits (74), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 104 TQFCSTDARRCFPCWDEPAVKAKFAISLSVPSSKVALSNMVR 145
+Q + R PC D P+VK + +SVP VAL + +R
Sbjct: 131 SQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIR 172
>pdb|1HS6|A Chain A, Structure Of Leukotriene A4 Hydrolase Complexed With
Bestatin.
pdb|2VJ8|A Chain A, Complex Of Human Leukotriene A4 Hydrolase With A
Hydroxamic Acid Inhibitor
pdb|3FTS|A Chain A, Leukotriene A4 Hydrolase In Complex With Resveratrol
pdb|3FTU|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol
pdb|3FTV|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment N-
(Pyridin-3-Ylmethyl)aniline
pdb|3FTW|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragments N-
(Pyridin-3-Ylmethyl)aniline And Acetate
pdb|3FTX|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol And Bestatin
pdb|3FTY|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 3-
(Benzyloxy)pyridin-2-Amine
pdb|3FU0|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(4-
Fluorobenzoyl)pyridine
pdb|3FU3|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(2-
Amino-1,3-Thiazol-4-Yl)phenol
pdb|3FU5|A Chain A, Leukotriene A4 Hydrolase In Complex With (5-Thiophen-2-
Ylthiophen-2-Yl)methylamine
pdb|3FU6|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment (4-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUD|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Methyl-1-(2-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUE|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Chloroindole And Bestatin
pdb|3FUF|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Fluoroindole And Bestatin
pdb|3FUH|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Hydroxyindole And Bestatin
pdb|3FUI|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Benzyl-4-[(2r)-
Pyrrolidin-2-Ylmethoxy]aniline
pdb|3FUJ|A Chain A, Leukotriene A4 Hydrolase In Complex With
5-[2-(1h-Pyrrol-1- Yl)ethoxy]-1h-Indole
pdb|3FUK|A Chain A, Leukotriene A4 Hydrolase In Complex With 1-[2-(1h-Indol-5-
Yloxy)ethyl]piperidine-4-Carboxylic Acid
pdb|3FUM|A Chain A, Leukotriene A4 Hydrolase In Complex With
(R)-Pyridin-4-Yl[4-
(2-Pyrrolidin-1-Ylethoxy)phenyl]methanol
pdb|3FUN|A Chain A, Leukotriene A4 Hydrolase In Complex With {4-[(2r)-
Pyrrolidin-2-Ylmethoxy]phenyl}(4-Thiophen-3-Ylphenyl)
Methanone
pdb|3FH5|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
(2r)-2-[(4- Benzylphenoxy)methyl]pyrrolidine.
pdb|3FH7|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
4-[(2s)-2-{[4-(4-
Chlorophenoxy)phenoxy]methyl}pyrrolidin-1-Yl]butanoate.
pdb|3FH8|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor 1-[2-(4-
Benzylphenoxy)ethyl]pyrrolidine.
pdb|3FHE|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor N-[3-(4-
Benzylphenoxy)propyl]-N-Methyl-Beta-Alanine.
pdb|3FTZ|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment
2-(pyridin-3- Ylmethoxy)aniline
pdb|3FUL|A Chain A, Leukotriene A4 Hydrolase In Complex With
Pyridin-4-Yl[4-(2-Pyrrolidin-
1-Ylethoxy)phenyl]methanone
pdb|4DPR|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Captopril
Length = 611
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 722 QNIALVVGHELAHQWFGNLVTMEWWTHLWLNEGYASFVEFLCVHHLFPE 770
++++ V+ HE++H W GNLVT + W H WLNEG+ ++E LF E
Sbjct: 288 KSLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGE 336
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 7/139 (5%)
Query: 159 TQFELTDARRCFPCWDEPAVKAKFSISLSVPNNKVALSNMPVKSESPQPD--GHRLLQFE 216
+Q + R PC D P+VK ++ +SVP VAL + E+P P+ ++ +F
Sbjct: 134 SQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYKFI 193
Query: 217 TSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYF 276
+ YL+A+VVG E+ G V++ + E+ + +L +D
Sbjct: 194 QKVPIPCYLIALVVGAL----ESRQIGPRTLVWSEKEQVEKSAYEFSETESMLKIAED-L 248
Query: 277 NIAYPLPKIDLVAIPVGHP 295
Y + DL+ +P P
Sbjct: 249 GGPYVWGQYDLLVLPPSFP 267
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 104 TQFCSTDARRCFPCWDEPAVKAKFAISLSVPSSKVALSNMVR 145
+Q + R PC D P+VK + +SVP VAL + +R
Sbjct: 134 SQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIR 175
>pdb|1H19|A Chain A, Structure Of [e271q] Leukotriene A4 Hydrolase
Length = 611
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 722 QNIALVVGHELAHQWFGNLVTMEWWTHLWLNEGYASFVEFLCVHHLFPE 770
++++ V+ HE++H W GNLVT + W H WLNEG+ ++E LF E
Sbjct: 288 KSLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGE 336
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 7/139 (5%)
Query: 159 TQFELTDARRCFPCWDEPAVKAKFSISLSVPNNKVALSNMPVKSESPQPD--GHRLLQFE 216
+Q + R PC D P+VK ++ +SVP VAL + E+P P+ ++ +F
Sbjct: 134 SQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYKFI 193
Query: 217 TSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYF 276
+ YL+A+VVG E+ G V++ + E+ + +L +D
Sbjct: 194 QKVPIPCYLIALVVGAL----ESRQIGPRTLVWSEKEQVEKSAYEFSETESMLKIAED-L 248
Query: 277 NIAYPLPKIDLVAIPVGHP 295
Y + DL+ +P P
Sbjct: 249 GGPYVWGQYDLLVLPPSFP 267
Score = 33.1 bits (74), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 104 TQFCSTDARRCFPCWDEPAVKAKFAISLSVPSSKVALSNMVR 145
+Q + R PC D P+VK + +SVP VAL + +R
Sbjct: 134 SQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIR 175
>pdb|1SQM|A Chain A, Structure Of [r563a] Leukotriene A4 Hydrolase
Length = 610
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 722 QNIALVVGHELAHQWFGNLVTMEWWTHLWLNEGYASFVEFLCVHHLFPE 770
++++ V+ HE++H W GNLVT + W H WLNEG+ ++E LF E
Sbjct: 287 KSLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGE 335
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 7/139 (5%)
Query: 159 TQFELTDARRCFPCWDEPAVKAKFSISLSVPNNKVALSNMPVKSESPQPD--GHRLLQFE 216
+Q + R PC D P+VK ++ +SVP VAL + E+P P+ ++ +F
Sbjct: 133 SQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYKFI 192
Query: 217 TSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYF 276
+ YL+A+VVG E+ G V++ + E+ + +L +D
Sbjct: 193 QKVPIPCYLIALVVGAL----ESRQIGPRTLVWSEKEQVEKSAYEFSETESMLKIAED-L 247
Query: 277 NIAYPLPKIDLVAIPVGHP 295
Y + DL+ +P P
Sbjct: 248 GGPYVWGQYDLLVLPPSFP 266
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 104 TQFCSTDARRCFPCWDEPAVKAKFAISLSVPSSKVALSNMVR 145
+Q + R PC D P+VK + +SVP VAL + +R
Sbjct: 133 SQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIR 174
>pdb|2R59|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3041
pdb|3B7R|L Chain L, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3040
pdb|3B7U|X Chain X, Leukotriene A4 Hydrolase Complexed With Kelatorphan
Length = 616
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 722 QNIALVVGHELAHQWFGNLVTMEWWTHLWLNEGYASFVEFLCVHHLFPE 770
++++ V+ HE++H W GNLVT + W H WLNEG+ ++E LF E
Sbjct: 293 KSLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGE 341
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 7/139 (5%)
Query: 159 TQFELTDARRCFPCWDEPAVKAKFSISLSVPNNKVALSNMPVKSESPQPD--GHRLLQFE 216
+Q + R PC D P+VK ++ +SVP VAL + E+P P+ ++ +F
Sbjct: 139 SQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYKFI 198
Query: 217 TSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYF 276
+ YL+A+VVG E+ G V++ + E+ + +L +D
Sbjct: 199 QKVPIPCYLIALVVGAL----ESRQIGPRTLVWSEKEQVEKSAYEFSETESMLKIAED-L 253
Query: 277 NIAYPLPKIDLVAIPVGHP 295
Y + DL+ +P P
Sbjct: 254 GGPYVWGQYDLLVLPPSFP 272
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 104 TQFCSTDARRCFPCWDEPAVKAKFAISLSVPSSKVALSNMVR 145
+Q + R PC D P+VK + +SVP VAL + +R
Sbjct: 139 SQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIR 180
>pdb|3CHO|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 2-Amino-N-[4-(Phenylmethoxy)phenyl]-Acetamide
pdb|3CHP|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (3s)-3-Amino-4-Oxo-4-[(4-Phenylmethoxyphenyl)
Amino]butanoic Acid
pdb|3CHQ|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With N5-[4-(Phenylmethoxy)phenyl]-L-Glutamine
pdb|3CHR|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 4-Amino-N-[4-(Phenylmethoxy)phenyl]-Butanamide
pdb|3CHS|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (2s)-2-Amino-5-[[4-[(2s)-2-Hydroxy-2-Phenyl-
Ethoxy]phenyl]amino]-5-Oxo-Pentanoic Acid
Length = 610
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 722 QNIALVVGHELAHQWFGNLVTMEWWTHLWLNEGYASFVEFLCVHHLFPE 770
++++ V+ HE++H W GNLVT + W H WLNEG+ ++E LF E
Sbjct: 287 KSLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGE 335
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 7/139 (5%)
Query: 159 TQFELTDARRCFPCWDEPAVKAKFSISLSVPNNKVALSNMPVKSESPQPD--GHRLLQFE 216
+Q + R PC D P+VK ++ +SVP VAL + E+P P+ ++ +F
Sbjct: 133 SQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYKFI 192
Query: 217 TSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYF 276
+ YL+A+VVG E+ G V++ + E+ + +L +D
Sbjct: 193 QKVPIPCYLIALVVGAL----ESRQIGPRTLVWSEKEQVEKSAYEFSETESMLKIAED-L 247
Query: 277 NIAYPLPKIDLVAIPVGHP 295
Y + DL+ +P P
Sbjct: 248 GGPYVWGQYDLLVLPPSFP 266
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 104 TQFCSTDARRCFPCWDEPAVKAKFAISLSVPSSKVALSNMVR 145
+Q + R PC D P+VK + +SVP VAL + +R
Sbjct: 133 SQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIR 174
>pdb|1GW6|A Chain A, Structure Of Leukotriene A4 Hydrolase D375n Mutant
Length = 610
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 722 QNIALVVGHELAHQWFGNLVTMEWWTHLWLNEGYASFVEFLCVHHLFPE 770
++++ V+ HE++H W GNLVT + W H WLNEG+ ++E LF E
Sbjct: 287 KSLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGE 335
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 7/139 (5%)
Query: 159 TQFELTDARRCFPCWDEPAVKAKFSISLSVPNNKVALSNMPVKSESPQPD--GHRLLQFE 216
+Q + R PC D P+VK ++ +SVP VAL + E+P P+ ++ +F
Sbjct: 133 SQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYKFI 192
Query: 217 TSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYF 276
+ YL+A+VVG E+ G V++ + E+ + +L +D
Sbjct: 193 QKVPIPCYLIALVVGAL----ESRQIGPRTLVWSEKEQVEKSAYEFSETESMLKIAED-L 247
Query: 277 NIAYPLPKIDLVAIPVGHP 295
Y + DL+ +P P
Sbjct: 248 GGPYVWGQYDLLVLPPSFP 266
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 104 TQFCSTDARRCFPCWDEPAVKAKFAISLSVPSSKVALSNMVR 145
+Q + R PC D P+VK + +SVP VAL + +R
Sbjct: 133 SQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIR 174
>pdb|3B7S|A Chain A, [e296q]lta4h In Complex With Rsr Substrate
pdb|3B7T|A Chain A, [e296q]lta4h In Complex With Arg-Ala-Arg Substrate
Length = 616
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 722 QNIALVVGHELAHQWFGNLVTMEWWTHLWLNEGYASFVEFLCVHHLFPE 770
++++ V+ H+++H W GNLVT + W H WLNEG+ ++E LF E
Sbjct: 293 KSLSNVIAHQISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGE 341
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 7/139 (5%)
Query: 159 TQFELTDARRCFPCWDEPAVKAKFSISLSVPNNKVALSNMPVKSESPQPD--GHRLLQFE 216
+Q + R PC D P+VK ++ +SVP VAL + E+P P+ ++ +F
Sbjct: 139 SQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYKFI 198
Query: 217 TSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYF 276
+ YL+A+VVG E+ G V++ + E+ + +L +D
Sbjct: 199 QKVPIPCYLIALVVGAL----ESRQIGPRTLVWSEKEQVEKSAYEFSETESMLKIAED-L 253
Query: 277 NIAYPLPKIDLVAIPVGHP 295
Y + DL+ +P P
Sbjct: 254 GGPYVWGQYDLLVLPPSFP 272
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 104 TQFCSTDARRCFPCWDEPAVKAKFAISLSVPSSKVALSNMVR 145
+Q + R PC D P+VK + +SVP VAL + +R
Sbjct: 139 SQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIR 180
>pdb|2GTQ|A Chain A, Crystal Structure Of Aminopeptidase N From Human Pathogen
Neisseria Meningitidis
Length = 867
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 30/62 (48%)
Query: 697 ENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHLWLNEGYA 756
EN GL + +L DS+ + + I VVGHE H W GN VT W L L EG
Sbjct: 260 ENKGLNIFNTKFVLADSRTATDTDFEGIESVVGHEYFHNWTGNRVTCRDWFQLSLKEGLT 319
Query: 757 SF 758
F
Sbjct: 320 VF 321
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 6/138 (4%)
Query: 159 TQFELTDARRCFPCWDEPAVKAKFSISLSVPNNK--VALSNMPVKSESPQPDGHRLLQFE 216
TQ E R+ D P V +KF+ ++ + V LSN DG +++E
Sbjct: 114 TQCEPEGFRKITFYIDRPDVXSKFTTTIVADKKRYPVLLSNGNKIDGGEFSDGRHWVKWE 173
Query: 217 TSPIMSTYLVAVVVGEF----DYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFY 272
+YL A+V G+ DY S V + YT + + FA+ +
Sbjct: 174 DPFSKPSYLFALVAGDLAVTEDYFTTXSGRNVKIEFYTTEADKPKVGFAVESLKNAXKWD 233
Query: 273 KDYFNIAYPLPKIDLVAI 290
+ F + Y L +VA+
Sbjct: 234 ETRFGLEYDLDIFXVVAV 251
>pdb|2DQ6|A Chain A, Crystal Structure Of Aminopeptidase N From Escherichia
Coli
pdb|2DQM|A Chain A, Crystal Structure Of Aminopeptidase N Complexed With
Bestatin
pdb|2ZXG|A Chain A, Aminopeptidase N Complexed With The Aminophosphinic
Inhibitor Of Pl250, A Transition State Analogue
Length = 870
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 29/64 (45%)
Query: 695 VMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHLWLNEG 754
MEN GL + +L + + +I V+GHE H W GN VT W L L EG
Sbjct: 262 AMENKGLNIFNSKYVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEG 321
Query: 755 YASF 758
F
Sbjct: 322 LTVF 325
Score = 36.6 bits (83), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 16/169 (9%)
Query: 159 TQFELTDARRCFPCWDEPAVKAKFSISLSVPNNK--VALSNMPVKSESPQPDGHRLLQFE 216
TQ E R D P V A+F+ + K LSN ++ +G +Q++
Sbjct: 118 TQCEAEGFRHITYYLDRPDVLARFTTKIIADKIKYPFLLSNGNRVAQGELENGRHWVQWQ 177
Query: 217 TSPIMSTYLVAVVVGEFDYVEET----SSDGVLVRVYTPVGKREQGQFALHVASKVLPFY 272
YL A+V G+FD + +T S V + +Y G ++ +A+ + +
Sbjct: 178 DPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNSMKWD 237
Query: 273 KDYFNIAYPLPKIDLVAIPVGHPSEVEEIFDDISYNKGASIIRMLQKYI 321
++ F + Y L +VA+ + +E NKG +I KY+
Sbjct: 238 EERFGLEYDLDIYMIVAVDFFNMGAME--------NKGLNIFN--SKYV 276
>pdb|2HPO|A Chain A, Structure Of Aminopeptidase N From E. Coli Suggests A
Compartmentalized, Gated Active Site
pdb|2HPT|A Chain A, Crystal Structure Of E. Coli Pepn (Aminopeptidase N)in
Complex With Bestatin
pdb|3KED|A Chain A, Crystal Structure Of Aminopeptidase N In Complex With 2,4-
Diaminobutyric Acid
pdb|3B2P|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Arginine
pdb|3B2X|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Lysine
pdb|3B34|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Phenylalanine
pdb|3B37|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tyrosine
pdb|3B3B|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tryptophan
pdb|3QJX|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With L-Serine
Length = 891
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 29/64 (45%)
Query: 695 VMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHLWLNEG 754
MEN GL + +L + + +I V+GHE H W GN VT W L L EG
Sbjct: 283 AMENKGLNIFNSKYVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEG 342
Query: 755 YASF 758
F
Sbjct: 343 LTVF 346
Score = 37.0 bits (84), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 16/169 (9%)
Query: 159 TQFELTDARRCFPCWDEPAVKAKFSISLSVPNNK--VALSNMPVKSESPQPDGHRLLQFE 216
TQ E R D P V A+F+ + K LSN ++ +G +Q++
Sbjct: 139 TQCEAEGFRHITYYLDRPDVLARFTTKIIADKIKYPFLLSNGNRVAQGELENGRHWVQWQ 198
Query: 217 TSPIMSTYLVAVVVGEFDYVEET----SSDGVLVRVYTPVGKREQGQFALHVASKVLPFY 272
YL A+V G+FD + +T S V + +Y G ++ +A+ + +
Sbjct: 199 DPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNSMKWD 258
Query: 273 KDYFNIAYPLPKIDLVAIPVGHPSEVEEIFDDISYNKGASIIRMLQKYI 321
++ F + Y L +VA+ + +E NKG +I KY+
Sbjct: 259 EERFGLEYDLDIYMIVAVDFFNMGAME--------NKGLNIFN--SKYV 297
>pdb|3PUU|A Chain A, Crystal Structure Of Glu121gln Mutant Of E. Coli
Aminopeptidase N
Length = 891
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 29/64 (45%)
Query: 695 VMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHLWLNEG 754
MEN GL + +L + + +I V+GHE H W GN VT W L L EG
Sbjct: 283 AMENKGLNIFNSKYVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEG 342
Query: 755 YASF 758
F
Sbjct: 343 LTVF 346
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 16/154 (10%)
Query: 174 DEPAVKAKFSISLSVPNNK--VALSNMPVKSESPQPDGHRLLQFETSPIMSTYLVAVVVG 231
D P V A+F+ + K LSN ++ +G +Q++ YL A+V G
Sbjct: 154 DRPDVLARFTTKIIADKIKYPFLLSNGNRVAQGELENGRHWVQWQDPFPKPCYLFALVAG 213
Query: 232 EFDYVEET----SSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDL 287
+FD + +T S V + +Y G ++ +A+ + + ++ F + Y L +
Sbjct: 214 DFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNSMKWDEERFGLEYDLDIYMI 273
Query: 288 VAIPVGHPSEVEEIFDDISYNKGASIIRMLQKYI 321
VA+ + +E NKG +I KY+
Sbjct: 274 VAVDFFNMGAME--------NKGLNIFN--SKYV 297
>pdb|4A7P|A Chain A, Se-Met Derivatized Ugdg, Udp-Glucose Dehydrogenase From
Sphingomonas Elodea
pdb|4A7P|B Chain B, Se-Met Derivatized Ugdg, Udp-Glucose Dehydrogenase From
Sphingomonas Elodea
Length = 446
Score = 33.1 bits (74), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 87/204 (42%), Gaps = 15/204 (7%)
Query: 241 SDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYF-NIAYPLPKIDLVAIPVGHPSEVE 299
+D V + V TP +R G L S V ++ N+ P + +PVG EVE
Sbjct: 85 ADAVFIAVGTP-SRRGDGHADL---SYVFAAAREIAENLTKPSVIVTKSTVPVGTGDEVE 140
Query: 300 EIFDDISYNKGASIIRMLQKYIGDGKYPILLRPSFQIPVGHPSE-----VEEIFDDISYN 354
I +++ N GA ++ +++ +G + ++ VG E EI+ +S N
Sbjct: 141 RIIAEVAPNSGAKVVSN-PEFLREGAAIEDFKRPDRVVVGTEDEFARQVXREIYRPLSLN 199
Query: 355 KGASIIRMLQKYIGDGVNSSSDSLWYVPLSFCTQANPSEEVFSAEMSTRVTQVTIPDVSP 414
+ A ++ + + + ++++ V ++F + E A++ + +
Sbjct: 200 QSAPVL-FTGRRTSELIKYAANAFLAVKITFINEIADLCEQVGADVQEVSRGIGXDNRIG 258
Query: 415 GHWIKLNPGTVGYYRVKYPRETLA 438
G ++ P GY +P++TLA
Sbjct: 259 GKFLHAGP---GYGGSCFPKDTLA 279
>pdb|1ZAV|A Chain A, Ribosomal Protein L10-L12(Ntd) Complex, Space Group P21
pdb|1ZAX|A Chain A, Ribosomal Protein L10-L12(Ntd) Complex, Space Group P212121,
Form B
Length = 180
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 995 LVRAQDSVFVI-ISAAQTKTGRELAWDFLKNNYATFTE-------RYKGGLLGRLVKHTT 1046
L R Q + V +S KT L DFL A TE +Y G R+VK+T
Sbjct: 3 LTRQQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTL 62
Query: 1047 ENFASESHAQEVTEFFTKNPTSWIERTVQQSVETIRL 1083
N A ++ E E F K PT+ + T VE +++
Sbjct: 63 LNLALKNAEYEGYEEFLKGPTAVLYVTEGDPVEAVKI 99
Score = 30.8 bits (68), Expect = 4.1, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 858 LVRAQDSVFVI-ISAAQTKTGRELAWEFLKNNYATFTE-------RYKGGLLGRLVKHTT 909
L R Q + V +S KT L +FL A TE +Y G R+VK+T
Sbjct: 3 LTRQQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTL 62
Query: 910 ENFASESHAQEVTEFFTKNPTSWIERTVQQSVETIRL 946
N A ++ E E F K PT+ + T VE +++
Sbjct: 63 LNLALKNAEYEGYEEFLKGPTAVLYVTEGDPVEAVKI 99
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 127
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 934 ERTVQQSVET---IRLNSECLKRDGEALYQNSDMQEEKDRISRSFSALKDPELLRKV 987
E+ V+ ET +L ++ + R G A + +D+ RS S +DPEL++KV
Sbjct: 66 EKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKV 122
>pdb|1ZAW|A Chain A, Ribosomal Protein L10-L12(Ntd) Complex, Space Group P212121,
Form A
Length = 180
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 8/97 (8%)
Query: 995 LVRAQDSVFVI-ISAAQTKTGRELAWDFLKNNYATFTE-------RYKGGLLGRLVKHTT 1046
L R Q + V S KT L DFL A TE +Y G R+VK+T
Sbjct: 3 LTRQQKELIVKEXSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTL 62
Query: 1047 ENFASESHAQEVTEFFTKNPTSWIERTVQQSVETIRL 1083
N A ++ E E F K PT+ + T VE +++
Sbjct: 63 LNLALKNAEYEGYEEFLKGPTAVLYVTEGDPVEAVKI 99
Score = 30.0 bits (66), Expect = 6.7, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 894 ERYKGGLLGRLVKHTTENFASESHAQEVTEFFTKNPTSWIERTVQQSVETIRL 946
E+Y G R+VK+T N A ++ E E F K PT+ + T VE +++
Sbjct: 47 EKYGDGARFRVVKNTLLNLALKNAEYEGYEEFLKGPTAVLYVTEGDPVEAVKI 99
>pdb|2CWJ|A Chain A, Crystal Structure Of Ape1501, A Putative Endonuclease From
Aeropyrum Pernix
Length = 123
Score = 30.4 bits (67), Expect = 5.8, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 272 YKDYFNIAYPLPKI-DLVAIPVGHPSEVEEIF 302
Y++YFN YP + + A+P+G P EVE +
Sbjct: 86 YREYFNRPYPARAVVGVAALPLGAPLEVEAVL 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,173,734
Number of Sequences: 62578
Number of extensions: 1325104
Number of successful extensions: 3175
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2889
Number of HSP's gapped (non-prelim): 214
length of query: 1102
length of database: 14,973,337
effective HSP length: 109
effective length of query: 993
effective length of database: 8,152,335
effective search space: 8095268655
effective search space used: 8095268655
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)