Query psy5250
Match_columns 1102
No_of_seqs 310 out of 2768
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 21:38:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5250.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5250hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1046|consensus 100.0 2.2E-88 4.7E-93 853.2 54.8 679 8-1101 58-879 (882)
2 TIGR02412 pepN_strep_liv amino 100.0 3.4E-69 7.4E-74 680.3 63.0 426 8-504 39-602 (831)
3 PF01433 Peptidase_M1: Peptida 100.0 3.6E-54 7.9E-59 505.3 28.4 232 3-290 20-259 (390)
4 KOG1046|consensus 100.0 2.5E-52 5.5E-57 526.5 15.4 263 419-800 131-400 (882)
5 COG0308 PepN Aminopeptidase N 100.0 4.2E-47 9.1E-52 479.4 51.3 109 685-799 274-383 (859)
6 TIGR02414 pepN_proteo aminopep 100.0 2.1E-45 4.6E-50 458.3 30.8 215 3-290 21-247 (863)
7 TIGR02411 leuko_A4_hydro leuko 100.0 1.6E-43 3.4E-48 430.9 29.0 213 2-286 24-247 (601)
8 PRK14015 pepN aminopeptidase N 100.0 8.2E-41 1.8E-45 418.5 35.9 360 3-435 33-552 (875)
9 TIGR02412 pepN_strep_liv amino 100.0 1.1E-39 2.4E-44 412.4 14.7 544 420-1089 100-830 (831)
10 PRK14015 pepN aminopeptidase N 100.0 4.4E-34 9.5E-39 358.1 13.9 257 420-798 107-370 (875)
11 PF11838 ERAP1_C: ERAP1-like C 100.0 1E-31 2.2E-36 307.2 13.9 125 958-1082 194-324 (324)
12 KOG1047|consensus 100.0 5.7E-28 1.2E-32 273.8 17.3 296 10-369 41-398 (613)
13 COG0308 PepN Aminopeptidase N 99.9 6.7E-26 1.5E-30 287.1 31.6 418 4-490 37-605 (859)
14 TIGR02414 pepN_proteo aminopep 99.8 1.6E-20 3.4E-25 235.7 17.7 143 293-435 288-540 (863)
15 PF01433 Peptidase_M1: Peptida 99.8 8.2E-21 1.8E-25 223.1 12.1 236 53-356 92-390 (390)
16 TIGR02411 leuko_A4_hydro leuko 99.8 5.1E-20 1.1E-24 225.2 10.3 220 102-368 126-388 (601)
17 KOG1047|consensus 99.8 1.9E-19 4.2E-24 205.0 7.0 159 521-770 175-334 (613)
18 KOG1932|consensus 99.7 1.5E-16 3.3E-21 193.1 20.4 264 3-325 40-387 (1180)
19 PF11838 ERAP1_C: ERAP1-like C 98.4 6.8E-07 1.5E-11 102.5 10.6 311 417-945 1-324 (324)
20 KOG1932|consensus 98.4 1E-06 2.2E-11 109.0 10.5 178 527-790 227-406 (1180)
21 PF13485 Peptidase_MA_2: Pepti 97.2 0.00027 5.9E-09 68.9 3.5 41 720-760 21-61 (128)
22 PF13485 Peptidase_MA_2: Pepti 89.4 0.053 1.1E-06 52.6 -2.2 77 293-369 30-118 (128)
23 PF10460 Peptidase_M30: Peptid 89.3 1.5 3.2E-05 50.9 9.0 72 696-770 114-189 (366)
24 PF07607 DUF1570: Protein of u 83.4 0.59 1.3E-05 46.2 1.5 38 726-763 3-42 (128)
25 PF10460 Peptidase_M30: Peptid 71.6 6.6 0.00014 45.6 5.8 32 293-324 144-188 (366)
26 PF04450 BSP: Peptidase of pla 55.5 11 0.00023 40.6 3.3 40 720-764 92-133 (205)
27 PF05299 Peptidase_M61: M61 gl 55.5 3.5 7.6E-05 40.5 -0.3 41 724-764 4-55 (122)
28 PF10023 DUF2265: Predicted am 53.0 12 0.00027 42.9 3.4 38 722-765 163-200 (337)
29 COG4324 Predicted aminopeptida 51.7 15 0.00032 40.2 3.6 39 721-765 194-232 (376)
30 PF07607 DUF1570: Protein of u 43.1 8.4 0.00018 38.2 0.2 24 293-316 6-40 (128)
31 PF04234 CopC: CopC domain; I 42.6 86 0.0019 29.3 6.9 61 14-76 16-80 (97)
32 PF10989 DUF2808: Protein of u 42.0 66 0.0014 32.6 6.5 49 39-89 74-124 (146)
33 PF01447 Peptidase_M4: Thermol 39.7 38 0.00082 34.6 4.3 21 578-598 69-89 (150)
34 PF13124 DUF3963: Protein of u 38.5 23 0.0005 26.6 1.8 20 1083-1102 4-23 (40)
35 PF10026 DUF2268: Predicted Zn 38.1 1.4E+02 0.003 31.8 8.5 52 720-771 61-117 (195)
36 PF05299 Peptidase_M61: M61 gl 37.7 14 0.0003 36.3 0.8 19 303-321 38-57 (122)
37 PF05596 Taeniidae_ag: Taeniid 36.5 1.2E+02 0.0026 26.4 6.1 51 1050-1102 11-61 (64)
38 PF10805 DUF2730: Protein of u 36.3 1.7E+02 0.0037 28.0 7.9 76 1019-1096 2-92 (106)
39 COG3975 Predicted protease wit 31.6 70 0.0015 38.8 5.3 43 721-763 244-297 (558)
40 smart00731 SprT SprT homologue 30.7 42 0.00091 33.9 2.9 18 720-737 55-72 (146)
41 COG3975 Predicted protease wit 30.0 1.9E+02 0.0041 35.3 8.4 62 256-319 181-298 (558)
42 PF03715 Noc2: Noc2p family; 28.5 2.6E+02 0.0057 31.9 9.1 97 995-1101 172-283 (299)
43 PF10023 DUF2265: Predicted am 24.3 1.2E+02 0.0026 35.1 5.3 29 293-321 170-201 (337)
44 PRK04860 hypothetical protein; 23.1 90 0.002 32.3 3.7 17 719-735 58-74 (160)
45 PF00046 Homeobox: Homeobox do 22.3 2.1E+02 0.0046 23.4 5.3 45 1049-1101 6-50 (57)
46 PRK10301 hypothetical protein; 22.2 4.4E+02 0.0096 25.9 8.3 61 14-76 42-107 (124)
47 PF08325 WLM: WLM domain; Int 21.8 65 0.0014 34.1 2.5 30 716-746 74-103 (186)
48 COG2372 CopC Uncharacterized p 20.4 3.3E+02 0.0072 27.0 6.7 59 18-76 47-110 (127)
49 PF12725 DUF3810: Protein of u 20.4 86 0.0019 36.2 3.3 32 723-766 195-226 (318)
No 1
>KOG1046|consensus
Probab=100.00 E-value=2.2e-88 Score=853.23 Aligned_cols=679 Identities=36% Similarity=0.599 Sum_probs=536.0
Q ss_pred EEEEEEEecCCEEEEecCCceEEEEEEEecCCccc--cceEEEeCCC-eEEEEEeCCccCCc-eEEEEEEEEEeeCCCcc
Q psy5250 8 ERYFKIVSETKELKLHVIDLDFKKVQLELADGKVL--TPETKISTED-ETITLTFSETLPVG-EVKLLFEYVGELNDKMK 83 (1102)
Q Consensus 8 ~~~~~v~~~t~~i~lh~~~l~i~~~~~~~~~~~~~--~~~~~~~~~~-~~l~i~~~~~l~~g-~~~l~i~y~g~~~~~~~ 83 (1102)
.|.++|.++|+.|+||+++|+|.++.+....+... .......... +.+.+.+++++..| +|+|.+.|.|.+++++.
T Consensus 58 ~I~l~v~~~t~~i~Lh~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~y~L~i~f~g~l~~~~~ 137 (882)
T KOG1046|consen 58 KISLEVSEATRFIVLHAKDLKITSASLVSRPSSGSVQLEVSVEEKEQEETLVFPLNETLLAGSSYTLTIEFTGKLNDSSE 137 (882)
T ss_pred EEEEEEecccCEEEEEhhhccceeEEEEecCCCCcccccccccccccceEEEEEcccccccCCeEEEEEEEeEeecCCcc
Confidence 34566799999999999999999999987542211 1111111111 78899999999999 89999999999999999
Q ss_pred ceeeeeccccCCcccceeEEeeeecCCCCcccccCCchhhcccceEeecccCcccccccceeeccccCCCcceEEecccc
Q psy5250 84 GFYRSKYRSVLHDEDRYMAVTQFCSTDARRCFPCWDEPAVKAKFAISLSVPSSKVALSNMVRIAILDDEDRYMAVTQFEL 163 (1102)
Q Consensus 84 G~y~~~y~~~~~~~~~~l~~Tqf~p~~aR~~fPC~DeP~~katf~i~~~~~~~~~~lsN~~~~~~~~~~~~~~~~t~feP 163 (1102)
|||+++|.+.++.+ +|+++|||||++||++|||||||+
T Consensus 138 G~y~s~y~~~~~~~-~~~~~Tqfept~AR~~FPCfDeP~----------------------------------------- 175 (882)
T KOG1046|consen 138 GFYRSSYTDSEGSE-KSIAATQFEPTDARRAFPCFDEPA----------------------------------------- 175 (882)
T ss_pred eeeeecccCCCCce-EEEEEeccCccchhhcCCCCCccc-----------------------------------------
Confidence 99999999987733 677777777777777777777775
Q ss_pred CCCccccccCCCCCceeeEEEEEEecCCceeeecccccccccCCCCeEEEEEEeCCCCCceeEEEEEecceEEeeeecCC
Q psy5250 164 TDARRCFPCWDEPAVKAKFSISLSVPNNKVALSNMPVKSESPQPDGHRLLQFETSPIMSTYLVAVVVGEFDYVEETSSDG 243 (1102)
Q Consensus 164 ~~Ar~~FPc~DeP~~KAtF~itI~~p~~~~alSng~~~~~~~~~~~~~~~~F~~t~pmstYl~a~~vg~f~~~~~~s~~g 243 (1102)
+||+|+|+|.||++++|+|||++.+..+.++++++++|++||+||||++||+||+|+..+..+.+|
T Consensus 176 --------------~KAtF~Itl~hp~~~~aLSNm~v~~~~~~~~~~~~~~F~~Tp~MstYLvAf~V~~f~~~e~~~~~~ 241 (882)
T KOG1046|consen 176 --------------FKATFTITLVHPKGYTALSNMPVIKEEPVDDGWKTTTFEKTPKMSTYLVAFAVGDFVYVETITKSG 241 (882)
T ss_pred --------------ccCceEEEEEecCCceEeecCcccccccccCCeeEEEEEecCCCchhhheeeeeccccceeecCCC
Confidence 466667777788899999999999888778889999999999999999999999999999988899
Q ss_pred eEEEEEecCCchhhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCeeecCC-------------------------------
Q psy5250 244 VLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAIPV------------------------------- 292 (1102)
Q Consensus 244 i~irv~~~p~~~~~~~~al~~~~~~L~~~e~~fGi~YPl~kld~VavPd------------------------------- 292 (1102)
+++|+|++|+..+++++|++.++++|+||+++||++||+||+|+|++|+
T Consensus 242 v~vrv~a~p~~~~~~~~al~~~~~~L~~~e~~f~i~yPLpK~D~iavPdf~~GAMENwGLvtyre~~lL~~~~~ss~~~k 321 (882)
T KOG1046|consen 242 VPVRVYARPEKINQGQFALEVATKVLEFYEDYFGIPYPLPKLDLVAVPDFSAGAMENWGLVTYRETALLYDPQTSSSSNK 321 (882)
T ss_pred ceEEEEeChHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCccccEEecCCccccchhcCcceeeeehhhccCCCcCcHHHH
Confidence 9999999999999999999999999999999999999999999999999
Q ss_pred -------CCcchh--------ccccchhhhhHh-HHHHHHHHHHhcCCCCccc----------------CCCc--ccccc
Q psy5250 293 -------GHPSEV--------EEIFDDISYNKG-ASIIRMLQKYIGDGKYPIL----------------LRPS--FQIPV 338 (1102)
Q Consensus 293 -------aHElaH--------~~WW~dlWLnEG-Aty~e~l~~~~~~~~~~~~----------------l~~~--~~i~~ 338 (1102)
+||+|| |+||+|+||||| |+|++++++++.+|+|.++ +..+ +..+.
T Consensus 322 ~~va~vIaHElAHQWFGNLVTm~wW~dLWLnEGfAt~~~~~~v~~~~p~~~~~~~~~~~~l~~~l~~D~l~~shpi~~~v 401 (882)
T KOG1046|consen 322 QRVAEVIAHELAHQWFGNLVTMKWWNDLWLNEGFATYVEYLAVDHLFPEWDIWEQFLLENLERVLSLDALASSHPISVPV 401 (882)
T ss_pred HHHHHHHHHHHHHHHhcCcccHhhhhhhhhcccHHHHHHHHhhccCCcchhhHHHHHHHHHHHHhhhhcccccCCeeeec
Confidence 899999 999999999999 9999999999999999876 1111 34556
Q ss_pred CCccccccccchhhccchHHHHHHHHHHhcC-----Cc------------------------------------------
Q psy5250 339 GHPSEVEEIFDDISYNKGASIIRMLQKYIGD-----GV------------------------------------------ 371 (1102)
Q Consensus 339 ~~~~~i~~~~~~~~Y~KG~~vl~mL~~~iG~-----g~------------------------------------------ 371 (1102)
.++..+..+|+.++|+||+.|++||+.++|+ |+
T Consensus 402 ~~~~ei~e~fd~i~Y~KGasvlRML~~~lGe~~F~~gi~~yL~~~~y~na~~~DLw~~l~~~~~~~v~~~M~~Wt~Q~G~ 481 (882)
T KOG1046|consen 402 ESPSEIDEIFDEISYQKGASVLRMLESLLGEEVFRKGLRSYLKKHQYSNAKTEDLWDALEEGSGLDVSELMDTWTKQMGY 481 (882)
T ss_pred CCcchhhhhhhhhhhhHHHHHHHHHHHHHCHHHHHHHHHHHHHHhccCCCCchhHHHHHhccCCCCHHHHHhhhhcCCCC
Confidence 6667778899999999999999999999997 21
Q ss_pred -------c-----------------CCCCCcEEEeeeEEecCCCCccceeEeeecceeEEEecCCCCCceEEecCCceeE
Q psy5250 372 -------N-----------------SSSDSLWYVPLSFCTQANPSEEVFSAEMSTRVTQVTIPDVSPGHWIKLNPGTVGY 427 (1102)
Q Consensus 372 -------~-----------------~~~~~~W~IPl~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~wi~lN~~~~Gy 427 (1102)
+ ...+.+|+||++|.+.+.+.. ...|++.++..+.++... +|+++|.+++||
T Consensus 482 Pvv~V~~~~~~~~l~Q~rf~~~~~~~~~~~~w~iPl~~~~~~~~~~--~~~~~~~~~~~~~l~~~~--~wi~~N~~~~g~ 557 (882)
T KOG1046|consen 482 PVVTVERNGDSLTLTQERFLSDPDPSEDNYLWWIPLTYTTSGSGSV--PKFWLSSKSTTIKLPESD--QWIKVNLEQTGY 557 (882)
T ss_pred ceEEEEecCCEEEEehhhhccCCCccccCcccceeEEEEcCCCCcc--ceeeecCCCcceecCCCC--eEEEEeCCcceE
Confidence 0 012479999999988877643 677888888888776543 899999999999
Q ss_pred EEEEcChhhHHhhhhhhcc-CCCCcchhhhhHHHHHHHHHcCCccHHHHHHHHHhhccccchhhHHHHHHHHHhhhhhhc
Q psy5250 428 YRVKYPRETLAQFIPSVED-KSIPPLDRLSLLDDLFALAQVGEVSLVEVLKMIQSMTHEDNYTVWITICNCLQKIDLLLS 506 (1102)
Q Consensus 428 YRV~Yd~~~~~~L~~~l~~-~~l~~~dR~~Li~Daf~la~ag~l~y~~~l~l~~~l~~E~~y~vW~~a~~~L~~l~~~ls 506 (1102)
|||+||+++|+.|+.++.. ..|+..||++|++|+|+||++|+++++.+|+++.|+.+|++|.||..+...+..+.. +.
T Consensus 558 yRV~Yd~~~w~~l~~~l~~~~~~~~~~Ra~li~D~~~la~~~~~~~~~~l~l~~~l~~e~~~~p~~~~~~~l~~~~~-~~ 636 (882)
T KOG1046|consen 558 YRVNYDDENWALLIEQLKNHESLSVIDRAQLINDAFALARAGRLPYSIALNLISYLKNETDYVPWSAAIRSLYKLHS-LE 636 (882)
T ss_pred EEEEeCHHHHHHHHHHHhhcCccCHhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcccccchHHHHHHHHHHHhh-cc
Confidence 9999999999999999976 789999999999999999999999999999999999999999999999999998888 66
Q ss_pred cchhhhhhhccCcccccCCCCCCceEEEEeecCCcceeEEEEEEecceeeeeeecCCeEEEEEeecccchhhhHHHHHHh
Q psy5250 507 NTEYHHLFYQFGPVKSESPQPDGHRLLQFETSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVAS 586 (1102)
Q Consensus 507 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (1102)
.++.+..++.|+. .+..
T Consensus 637 ~~~~~~~~~~~~~-----------------------------------------------~l~~---------------- 653 (882)
T KOG1046|consen 637 DTEIYSKFKEFVK-----------------------------------------------KLIL---------------- 653 (882)
T ss_pred cchHHHHHHHHHH-----------------------------------------------HHHH----------------
Confidence 6777777777663 0000
Q ss_pred hhhHHHHhhhccCCCCCccceeccCCCccccccccCccccccccccccccCCCCcccccchhhhhhhccCCCCCCcccCc
Q psy5250 587 KVLPFYKDYFNIAYPLPKIDLVALNPGTVGYYRVKYPRETLAQFIPSVEDKSIPPLDRLSLLDDLFACHGELGPSHLSGS 666 (1102)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (1102)
+.++... .. ++ . . ...+..+ + .
T Consensus 654 ---~~~~~~~-----~~--------~~-----------~-------------~------~~~~~~l-----------~-~ 675 (882)
T KOG1046|consen 654 ---PIFEKLG-----WS--------DG-----------A-------------D------SSLDNML-----------R-V 675 (882)
T ss_pred ---HHHHHhc-----CC--------cc-----------c-------------c------chhHHHH-----------H-H
Confidence 1111100 00 00 0 0 0000000 0 0
Q ss_pred cccCccccccCCCCCCCcCCCCCCCCCCcccccceeeeecceecccCCCchhhhhhhHHHHHHHHHhhhhccCccchhhh
Q psy5250 667 VSSGRLSEHIGYHPTEHSSGCGARVGSPVMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWW 746 (1102)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~e~~g~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~e~a~~wfg~~~~~~~~ 746 (1102)
.++..+ |.++...+
T Consensus 676 ~~~~~a-------------------------------------------------------~~~~~~~~----------- 689 (882)
T KOG1046|consen 676 SVLSFA-------------------------------------------------------CRFGHEEC----------- 689 (882)
T ss_pred HHHHHH-------------------------------------------------------HhcCcHHH-----------
Confidence 000111 11111111
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhchhhhHHHHhhhhcCCCcccchhhhHhHHHHHHhhcCCCceeecCCc
Q psy5250 747 THLWLNEGYASFVEFLCVHHLFPEYDIWTQFVTDNLVRALELDALKSSHPTQFVTDNLVRALELDALKSSHPIELYQNSD 826 (1102)
Q Consensus 747 ~~~wl~e~~a~~~~~~~~~~~~p~~~~~~~~~~~~l~~a~~~da~~~s~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 826 (1102)
+..+...|.++......+|. +++.+++|++++.+
T Consensus 690 ----~~~a~~~f~~~~~~~~~ip~----------~lr~~vy~~~~~~g-------------------------------- 723 (882)
T KOG1046|consen 690 ----LKKAVELFRQWLAGTNPIPP----------DLREVVYCTAVQFG-------------------------------- 723 (882)
T ss_pred ----HHHHHHHHHHHHhcCCCCCh----------hhhhhhhhHHHHhc--------------------------------
Confidence 22222222222222111221 11111111111100
Q ss_pred chHHHHHHHhhhccCCCHHHHHHHHHhhccccccccchHHHHHHhhcccccchhHHHHHHhhHHHHHHHhcCCchhhhHH
Q psy5250 827 MQEEKDRISRSFSALKDPELLRKVLDFSMSDLVRAQDSVFVIISAAQTKTGRELAWEFLKNNYATFTERYKGGLLGRLVK 906 (1102)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~w~~~~~n~~~l~~~~~~~~l~~~~~ 906 (1102)
T Consensus 724 -------------------------------------------------------------------------------- 723 (882)
T KOG1046|consen 724 -------------------------------------------------------------------------------- 723 (882)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhcCCHHHHHHHHHHHhcCCCchhhhHHHHHHHHHHHhHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCHHHHHH
Q psy5250 907 HTTENFASESHAQEVTEFFTKNPTSWIERTVQQSVETIRLNSECLKRDGEALYQNSDMQEEKDRISRSFSALKDPELLRK 986 (1102)
Q Consensus 907 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ly~~s~~~sEK~~iL~ALacs~dp~lL~r 986 (1102)
....| .....+|+.+....||..++.||+|++++++|+|
T Consensus 724 ---------------------------------------~~~~w--~~~~~~y~~~~~~~e~~~~l~al~~~~~~~~l~~ 762 (882)
T KOG1046|consen 724 ---------------------------------------TEEDW--EQLLELYKKETTAAEKRKLLNALSCSKDPWLLQR 762 (882)
T ss_pred ---------------------------------------CHhHH--HHHHHHHhccccHHHHHHHHHHhccCccHHHHHH
Confidence 01112 1123456667777999999999999999999999
Q ss_pred HHHhhcC-CccccccHHHHHHHhccCchhhHHHHHHHHHhHHHHHHHcCcc-hHHHhHHhhcccCCCHHHHHHHHHHhhc
Q psy5250 987 VLDFSMS-DLVRAQDSVFVIISAAQTKTGRELAWDFLKNNYATFTERYKGG-LLGRLVKHTTENFASESHAQEVTEFFTK 1064 (1102)
Q Consensus 987 ~L~~sL~-~~Ir~QD~~~v~~sVa~n~~G~~laW~Fl~~NW~~I~~r~~~~-~l~~lI~~~t~~f~T~~el~ev~~Ff~~ 1064 (1102)
+|++.++ +.++.||...++.+++.|+.|..+||+|+++||+.+.++|++. .++++|..++..|.++.+++++++||+.
T Consensus 763 ~l~~~~~~~~v~~qd~~~~~~~~~~~~~g~~~a~~~~~~n~~~l~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~f~~~ 842 (882)
T KOG1046|consen 763 LLDLAFDAENVRDQDVLTLLQGISGNPRGVELAWKFLQDNWKELLNRYGNNFELSRLISFITEPFATEEKLDEVEKFFAD 842 (882)
T ss_pred HHHHhcccccccchhHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhccCCHHHHHHHHHHHhc
Confidence 9999998 7899999999999999999999999999999999999999844 7999999999999999999999999998
Q ss_pred CCCchHHhHHHHHHHHHHHHHHHHHHcHHHHHHHHhh
Q psy5250 1065 NPTSWIERTVQQSVETIRLNSECLKRDGEAVKQFLST 1101 (1102)
Q Consensus 1065 ~~~~~~~r~~~qalE~i~~Ni~W~~~~~~~v~~WL~~ 1101 (1102)
.+..+..++++|++|.++.|++|++++...+.+||.+
T Consensus 843 ~~~~~~~~~~~~~le~~~~ni~W~~~~~~~l~~~l~~ 879 (882)
T KOG1046|consen 843 IPKTGAERALQQALETVKANIQWVERNEENLTQWLLE 879 (882)
T ss_pred CCcchhhHHHHHHHHHHHhhhhHHHhhHHHHHHHHHH
Confidence 8776668999999999999999999999999999975
No 2
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=100.00 E-value=3.4e-69 Score=680.31 Aligned_cols=426 Identities=21% Similarity=0.331 Sum_probs=335.6
Q ss_pred EEEEEEEecCCEEEEecCCceEEEEEEEecCCccccceEEEeCCCeEEEEEeCCccCCceEEEEEEEEEeeCCCccceee
Q psy5250 8 ERYFKIVSETKELKLHVIDLDFKKVQLELADGKVLTPETKISTEDETITLTFSETLPVGEVKLLFEYVGELNDKMKGFYR 87 (1102)
Q Consensus 8 ~~~~~v~~~t~~i~lh~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~l~~g~~~l~i~y~g~~~~~~~G~y~ 87 (1102)
.+.+++.++++.|+||+.+++|.+|.+. |. .+....+ ++ ..|.+++ |.+|.+.++|.|.+.+++...|+|+
T Consensus 39 ~i~~~~~~~~~~l~LD~~~l~I~~v~vn---g~-~~~~~~~--~~--~~i~l~~-l~~g~~~l~i~~~~~~~~~~~Gl~~ 109 (831)
T TIGR02412 39 TNTVRLSEPGADTFLDLLAAQIESVTLN---GI-LDVAPVY--DG--SRIPLPG-LLTGENTLRVEATRAYTNTGEGLHR 109 (831)
T ss_pred EEEEEEcCCCCcEEEEccCCEEEEEEEC---Cc-ccCcccc--CC--CEEEccC-CCCCceEEEEEEEEEecCCCceEEE
Confidence 4445667889999999999999999983 33 1222222 33 3466655 7777889999999999988999998
Q ss_pred eeccccCCcccceeEEeeeecCCCCcccccCCchhhcccceEeecccCcccccccceeeccccCCCcceEEeccccCCCc
Q psy5250 88 SKYRSVLHDEDRYMAVTQFCSTDARRCFPCWDEPAVKAKFAISLSVPSSKVALSNMVRIAILDDEDRYMAVTQFELTDAR 167 (1102)
Q Consensus 88 ~~y~~~~~~~~~~l~~Tqf~p~~aR~~fPC~DeP~~katf~i~~~~~~~~~~lsN~~~~~~~~~~~~~~~~t~feP~~Ar 167 (1102)
..+. . .++++++|||||++||
T Consensus 110 ~~~~--~---------------------------------------------------------~g~~~~~Tq~ep~~Ar 130 (831)
T TIGR02412 110 FVDP--V---------------------------------------------------------DGEVYLYTQFEPADAR 130 (831)
T ss_pred EEeC--C---------------------------------------------------------CCeEEEEECCCCcCce
Confidence 5432 1 1235678888999999
Q ss_pred cccccCCCCCceeeEEEEEEecCCceeeecccccccccCCCCeEEEEEEeCCCCCceeEEEEEecceEEeeeecCCeEEE
Q psy5250 168 RCFPCWDEPAVKAKFSISLSVPNNKVALSNMPVKSESPQPDGHRLLQFETSPIMSTYLVAVVVGEFDYVEETSSDGVLVR 247 (1102)
Q Consensus 168 ~~FPc~DeP~~KAtF~itI~~p~~~~alSng~~~~~~~~~~~~~~~~F~~t~pmstYl~a~~vg~f~~~~~~s~~gi~ir 247 (1102)
+||||||+|++||+|+++|++|++|+|+|||++.+... .+++++++|+.|||||||++||++|+|...+.. .+|++++
T Consensus 131 ~~fPcfDeP~~KAtf~ltit~p~~~~v~sNg~~~~~~~-~~~~~~~~F~~t~pmstYL~a~~vG~f~~~~~~-~~gvpi~ 208 (831)
T TIGR02412 131 RVFAVFDQPDLKANFKFSVKAPEDWTVISNSRETDVTP-EPADRRWEFPETPKLSTYLTAVAAGPYHSVQDE-SRSYPLG 208 (831)
T ss_pred eeEecCCCCCCceeEEEEEEECCCceEECCCccccccc-cCCCeEEEecCCCCcccceEEEEEeceEEEeec-CCCEEEE
Confidence 99999999999999999999999999999999876553 345778999999999999999999999988754 5789999
Q ss_pred EEecCCchhh--HHHHHHHHHHHHHHHHHhhCCCCCCCCCCeeecCC---------------------------------
Q psy5250 248 VYTPVGKREQ--GQFALHVASKVLPFYKDYFNIAYPLPKIDLVAIPV--------------------------------- 292 (1102)
Q Consensus 248 v~~~p~~~~~--~~~al~~~~~~L~~~e~~fGi~YPl~kld~VavPd--------------------------------- 292 (1102)
+|++|+..+. ++++++.++++|++|+++||+|||++|+|+|++|+
T Consensus 209 v~~~~~~~~~~~~~~al~~~~~~l~~~e~~fg~pYP~~k~d~V~vP~f~~GaMEn~Glit~~e~~l~~~~~~~~~~~~~~ 288 (831)
T TIGR02412 209 IYARRSLAQYLDADAIFTITRQGLAFFHRKFGYPYPFKKYDQIFVPEFNAGAMENAGCVTFAENFLHRAEATRAEKENRA 288 (831)
T ss_pred EEECcchhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCEEEcCCCCCCcccccceeeechhhccCCcCCHHHHHHHH
Confidence 9999997764 67899999999999999999999999999999997
Q ss_pred ---CCcchh--------ccccchhhhhHh-HHHHHHHHHHhcCCCCcccCC------------Cc------cccccCCcc
Q psy5250 293 ---GHPSEV--------EEIFDDISYNKG-ASIIRMLQKYIGDGKYPILLR------------PS------FQIPVGHPS 342 (1102)
Q Consensus 293 ---aHElaH--------~~WW~dlWLnEG-Aty~e~l~~~~~~~~~~~~l~------------~~------~~i~~~~~~ 342 (1102)
+||+|| |+||+|+||||| |+|+++++.+...|.++.|.. .+ +..+...+.
T Consensus 289 ~viaHElAHqWFGnlVT~~wW~dlWLnEGFAty~e~~~~~~~~~~~~~~~~f~~~~~~~a~~~D~~~~t~Pi~~~~~~~~ 368 (831)
T TIGR02412 289 GVILHEMAHMWFGDLVTMRWWNDLWLNESFAEYMGTLASAEATEYTDAWTTFAAQGKQWAYEADQLPTTHPIVADVADLA 368 (831)
T ss_pred HHHHHHHHHHHhCCEeccccccchhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhcccCCCCCccCCCCHH
Confidence 799999 999999999999 999999999998887765410 00 122223334
Q ss_pred ccccccchhhccchHHHHHHHHHHhcC-----Cc----------------------------------------------
Q psy5250 343 EVEEIFDDISYNKGASIIRMLQKYIGD-----GV---------------------------------------------- 371 (1102)
Q Consensus 343 ~i~~~~~~~~Y~KG~~vl~mL~~~iG~-----g~---------------------------------------------- 371 (1102)
++...|+.++|.||+++|+||+.++|+ |+
T Consensus 369 ~~~~~fd~isY~KGa~vL~mL~~~lGee~F~~glr~Yl~~~~~~nat~~Dl~~~l~~~sg~dl~~~~~~W~~~~G~P~l~ 448 (831)
T TIGR02412 369 DALSNFDGITYAKGASVLKQLVAWVGEEAFFAGVNAYFKRHAFGNATLDDLIDSLAKASGRDLSAWSDAWLETAGVNTLT 448 (831)
T ss_pred HHHHhccCccchhHHHHHHHHHHHHCHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHcCCCCceEE
Confidence 566789999999999999999999997 11
Q ss_pred ---c-CC------------CCCcEEEeeeEEecCCCCc---cceeEeeecceeEEE-ecCCCCCceEEecCCceeEEEEE
Q psy5250 372 ---N-SS------------SDSLWYVPLSFCTQANPSE---EVFSAEMSTRVTQVT-IPDVSPGHWIKLNPGTVGYYRVK 431 (1102)
Q Consensus 372 ---~-~~------------~~~~W~IPl~~~~~~~~~~---~~~~~~l~~~~~~~~-i~~~~~~~wi~lN~~~~GyYRV~ 431 (1102)
. +. ....|+|||++.+.++... .....++......+. ..+...++||++|.++.|||||+
T Consensus 449 v~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~N~~~~gyyrv~ 528 (831)
T TIGR02412 449 PEITTDGGVVSALYPESSGPPRPHRIAIGLYDLDRDDLRRTTLVPLTISGERTAVPQLVGKRAPALVLLNDDDLTYAKVR 528 (831)
T ss_pred EEEEECCCeEEEEEEecCCCCCCeeEEEeeeecCCCcceeeeEEEEEEecCceeehhhcCCCCCCEEEEeCCCcEEEEEE
Confidence 0 00 0134999999754433221 111234433222221 11122458999999999999999
Q ss_pred cChhhHHhhhhhhccCCCCcchhhhhHHHHHHHHHcCCccHHHHHHHH-HhhccccchhhHHHHHHHHH-hhhhh
Q psy5250 432 YPRETLAQFIPSVEDKSIPPLDRLSLLDDLFALAQVGEVSLVEVLKMI-QSMTHEDNYTVWITICNCLQ-KIDLL 504 (1102)
Q Consensus 432 Yd~~~~~~L~~~l~~~~l~~~dR~~Li~Daf~la~ag~l~y~~~l~l~-~~l~~E~~y~vW~~a~~~L~-~l~~~ 504 (1102)
||+.+|+.|.+.+.. ..++.+|++|++|+|+++++|.++++.+++++ .+|.+|++|.||..++..+. .+...
T Consensus 529 yd~~~~~~l~~~l~~-~~~~~~R~~l~~d~~~~~~~g~~~~~~~l~l~~~~l~~E~~~~v~~~~~~~l~~~~~~~ 602 (831)
T TIGR02412 529 LDPTSFDTVLAALSK-LPDPLSRAVVWASLWDSVRDGELSPDDYLSTVFAHVPSETDYAVVQQVLSQLLRAVAAQ 602 (831)
T ss_pred CCHHHHHHHHHHhhh-CCChhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHH
Confidence 999999999998843 23899999999999999999999999999966 89999999999999988776 54443
No 3
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=100.00 E-value=3.6e-54 Score=505.25 Aligned_cols=232 Identities=41% Similarity=0.723 Sum_probs=182.6
Q ss_pred ccCcEEEE----EEEEecCCEEEEecCCceEEEEEEEecCCcc-cc-ceEEEeCCCeEEEEEeCCccCCc-eEEEEEEEE
Q psy5250 3 EKKPFERY----FKIVSETKELKLHVIDLDFKKVQLELADGKV-LT-PETKISTEDETITLTFSETLPVG-EVKLLFEYV 75 (1102)
Q Consensus 3 ~~~~~~~~----~~v~~~t~~i~lh~~~l~i~~~~~~~~~~~~-~~-~~~~~~~~~~~l~i~~~~~l~~g-~~~l~i~y~ 75 (1102)
++..|.|. +++.++++.|+||+.+|+|.++.+....... .. ..+.++.+++.|+|.+++++.+| .|.|+|.|+
T Consensus 20 ~~~~f~G~v~I~~~~~~~~~~I~L~~~~l~I~~v~~~~~~~~~~~~~~~~~~~~~~~~l~I~l~~~l~~g~~~~L~I~y~ 99 (390)
T PF01433_consen 20 EKRTFSGTVTITFEVTEPTNSIVLHAKDLSISSVSLNGNDSSSEYKSSPFEYDDENEKLTITLPKPLPPGSNYTLRIEYS 99 (390)
T ss_dssp TTTEEEEEEEEEEEESSTECEEEEEESSEEEEEEEETTEECSCTECCEEEEEECCBTEEEEEEEEECSTTEEEEEEEEEE
T ss_pred CCCEEEEEEEEEEEEecCCCEEEEEeeccEEEEEeecCccccccccccceeeccccceeehhhhhhcccCcEEEEEEEEe
Confidence 44555555 5567799999999999999999885432211 11 12788889999999999999999 799999999
Q ss_pred EeeCCCccceeeeeccc-cCCcccceeEEeeeecCCCCcccccCCchhhcccceEeecccCcccccccceeeccccCCCc
Q psy5250 76 GELNDKMKGFYRSKYRS-VLHDEDRYMAVTQFCSTDARRCFPCWDEPAVKAKFAISLSVPSSKVALSNMVRIAILDDEDR 154 (1102)
Q Consensus 76 g~~~~~~~G~y~~~y~~-~~~~~~~~l~~Tqf~p~~aR~~fPC~DeP~~katf~i~~~~~~~~~~lsN~~~~~~~~~~~~ 154 (1102)
|.++++..|+|++.|.+ .++ ..+
T Consensus 100 g~~~~~~~G~~~~~y~~~~~~--------------------------------------------------------~~~ 123 (390)
T PF01433_consen 100 GKISDDSSGLYRSSYTDQTNG--------------------------------------------------------NTR 123 (390)
T ss_dssp EECBSSSSEEEEEEEE-GTSS--------------------------------------------------------SET
T ss_pred ecccccccccccceeeccccc--------------------------------------------------------ccC
Confidence 99999899999999987 444 456
Q ss_pred ceEEeccccCCCccccccCCCCCceeeEEEEEEecCCceeeecccccccccCCCCeEEEEEEeCCCCCceeEEEEEecce
Q psy5250 155 YMAVTQFELTDARRCFPCWDEPAVKAKFSISLSVPNNKVALSNMPVKSESPQPDGHRLLQFETSPIMSTYLVAVVVGEFD 234 (1102)
Q Consensus 155 ~~~~t~feP~~Ar~~FPc~DeP~~KAtF~itI~~p~~~~alSng~~~~~~~~~~~~~~~~F~~t~pmstYl~a~~vg~f~ 234 (1102)
++.+|+|||.+||+||||||+|++||+|+++|++|++++|+|||++.+....++++++++|..|+|||+|++||+||+|.
T Consensus 124 ~~~~t~~~p~~ar~~fPc~D~p~~ka~f~~~i~~p~~~~~~sng~~~~~~~~~~~~~~~~f~~t~p~~~yl~a~~vg~~~ 203 (390)
T PF01433_consen 124 WYIYTQFEPNGARRWFPCFDEPSFKATFDLTITHPKDYTALSNGPLEEEESNDDGWKTTTFETTPPMPTYLFAFAVGDFE 203 (390)
T ss_dssp CEEEEE-TTTTGGGTSSB--STTSEEEEEEEEEEETTTEEEESSEEEEEEEETTTEEEEEEEEEEEEEGGG--EEEESEE
T ss_pred CceeecccccccceeeeeeccCCccceEEEeeeccccceeeccccccccccccccceeEeeecccccCchhhhhhcCccc
Confidence 77889999999999999999999999999999999999999999998887767889999999999999999999999999
Q ss_pred EEeeeecCCeEEEEEecCCchhhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCeeec
Q psy5250 235 YVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAI 290 (1102)
Q Consensus 235 ~~~~~s~~gi~irv~~~p~~~~~~~~al~~~~~~L~~~e~~fGi~YPl~kld~Vav 290 (1102)
..+....+|+++++|++|+..+.++++++.+++++++|+++||++||++|+|+|++
T Consensus 204 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~yp~~k~~~v~~ 259 (390)
T PF01433_consen 204 SVEVTTKSGVPVRVYARPGDEEQLQFALDIAPKALEYYEEYFGIPYPFKKLDIVAV 259 (390)
T ss_dssp EEEEETTTEEEEEEEEECTCGGGHHHHHHHHHHHHHHHHHHHTS--SSSEEEEEEE
T ss_pred ccccccccccchheeehhhhHHHHHHHHHhhHHHHHHHHhhccccceecceeEEEE
Confidence 98877666799999999986666666666666555555555554444444444433
No 4
>KOG1046|consensus
Probab=100.00 E-value=2.5e-52 Score=526.45 Aligned_cols=263 Identities=55% Similarity=0.949 Sum_probs=239.2
Q ss_pred EecCCceeEEEEEcChh-------hHHhhhhhhccCCCCcchhhhhHHHHHHHHHcCCccHHHHHHHHHhhccccchhhH
Q psy5250 419 KLNPGTVGYYRVKYPRE-------TLAQFIPSVEDKSIPPLDRLSLLDDLFALAQVGEVSLVEVLKMIQSMTHEDNYTVW 491 (1102)
Q Consensus 419 ~lN~~~~GyYRV~Yd~~-------~~~~L~~~l~~~~l~~~dR~~Li~Daf~la~ag~l~y~~~l~l~~~l~~E~~y~vW 491 (1102)
++|.+..||||..|.+. .-+++.+..+|++|||.|++.+. |-+. -.+.+++.|.
T Consensus 131 ~l~~~~~G~y~s~y~~~~~~~~~~~~Tqfept~AR~~FPCfDeP~~K--------AtF~---------Itl~hp~~~~-- 191 (882)
T KOG1046|consen 131 KLNDSSEGFYRSSYTDSEGSEKSIAATQFEPTDARRAFPCFDEPAFK--------ATFT---------ITLVHPKGYT-- 191 (882)
T ss_pred eecCCcceeeeecccCCCCceEEEEEeccCccchhhcCCCCCccccc--------CceE---------EEEEecCCce--
Confidence 67888899999999774 23789999999999999999974 1110 1133444433
Q ss_pred HHHHHHHHhhhhhhccchhhhhhhccCcccccCCCCCCceEEEEeecCCcceeEEEEEEecceeeeeeecCCeEEEEEee
Q psy5250 492 ITICNCLQKIDLLLSNTEYHHLFYQFGPVKSESPQPDGHRLLQFETSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYTP 571 (1102)
Q Consensus 492 ~~a~~~L~~l~~~ls~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (1102)
+++|+ ++.++.+.++|+..++|++||+||||||||+||+|++++..+.+||+||+|++
T Consensus 192 ------------aLSNm----------~v~~~~~~~~~~~~~~F~~Tp~MstYLvAf~V~~f~~~e~~~~~~v~vrv~a~ 249 (882)
T KOG1046|consen 192 ------------ALSNM----------PVIKEEPVDDGWKTTTFEKTPKMSTYLVAFAVGDFVYVETITKSGVPVRVYAR 249 (882)
T ss_pred ------------EeecC----------cccccccccCCeeEEEEEecCCCchhhheeeeeccccceeecCCCceEEEEeC
Confidence 56665 45667788888999999999999999999999999999999999999999999
Q ss_pred cccchhhhHHHHHHhhhhHHHHhhhccCCCCCccceeccCCCccccccccCccccccccccccccCCCCcccccchhhhh
Q psy5250 572 VGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVALNPGTVGYYRVKYPRETLAQFIPSVEDKSIPPLDRLSLLDDL 651 (1102)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (1102)
|+...++.||++++.++|+||++||+|+||+||+|+||+ |+
T Consensus 250 p~~~~~~~~al~~~~~~L~~~e~~f~i~yPLpK~D~iav-Pd-------------------------------------- 290 (882)
T KOG1046|consen 250 PEKINQGQFALEVATKVLEFYEDYFGIPYPLPKLDLVAV-PD-------------------------------------- 290 (882)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCccccEEec-CC--------------------------------------
Confidence 999999999999999999999999999999999999999 76
Q ss_pred hhccCCCCCCcccCccccCccccccCCCCCCCcCCCCCCCCCCcccccceeeeecceecccCCCchhhhhhhHHHHHHHH
Q psy5250 652 FACHGELGPSHLSGSVSSGRLSEHIGYHPTEHSSGCGARVGSPVMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHE 731 (1102)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~e~~g~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~e 731 (1102)
|..|| |||||||||||..||||++.++...|++++.+||||
T Consensus 291 ---------------------------------f~~GA------MENwGLvtyre~~lL~~~~~ss~~~k~~va~vIaHE 331 (882)
T KOG1046|consen 291 ---------------------------------FSAGA------MENWGLVTYRETALLYDPQTSSSSNKQRVAEVIAHE 331 (882)
T ss_pred ---------------------------------ccccc------hhcCcceeeeehhhccCCCcCcHHHHHHHHHHHHHH
Confidence 88998 999999999999999999999999999999999999
Q ss_pred HhhhhccCccchhhhhHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhchhhhHHHHhhhhcCCCcccc
Q psy5250 732 LAHQWFGNLVTMEWWTHLWLNEGYASFVEFLCVHHLFPEYDIWTQFVTDNLVRALELDALKSSHPTQFV 800 (1102)
Q Consensus 732 ~a~~wfg~~~~~~~~~~~wl~e~~a~~~~~~~~~~~~p~~~~~~~~~~~~l~~a~~~da~~~s~p~~~~ 800 (1102)
+|||||||||||+||+|+|||||||+|+++.++++..|+|++|++|+.+++..++..|++.++||+.+.
T Consensus 332 lAHQWFGNLVTm~wW~dLWLnEGfAt~~~~~~v~~~~p~~~~~~~~~~~~l~~~l~~D~l~~shpi~~~ 400 (882)
T KOG1046|consen 332 LAHQWFGNLVTMKWWNDLWLNEGFATYVEYLAVDHLFPEWDIWEQFLLENLERVLSLDALASSHPISVP 400 (882)
T ss_pred HHHHHhcCcccHhhhhhhhhcccHHHHHHHHhhccCCcchhhHHHHHHHHHHHHhhhhcccccCCeeee
Confidence 999999999999999999999999999999999999999999999999999999999999999999853
No 5
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=100.00 E-value=4.2e-47 Score=479.36 Aligned_cols=109 Identities=50% Similarity=0.885 Sum_probs=104.4
Q ss_pred CCCCCCCCCCcccccceeeeecceecccCCCchhhhhhhHHHHHHHHHhhhhccCccchhhhhHHHHHHHHHHHHHHhhc
Q psy5250 685 SGCGARVGSPVMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHLWLNEGYASFVEFLCV 764 (1102)
Q Consensus 685 ~~~~a~~~~~~~e~~g~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~e~a~~wfg~~~~~~~~~~~wl~e~~a~~~~~~~~ 764 (1102)
|..|| |||||+++|++.++|.+++..+....++++.+|+||+|||||||+|||+||+++||||||++|+++...
T Consensus 274 f~~Ga------MEN~Gl~tf~~~~ll~~~~~at~~~~~~~~~viaHElaHqWfGnlVT~~~W~~lWLnEgfat~~e~~~~ 347 (859)
T COG0308 274 FSAGA------MENWGLVTFREKYLLADPETATDSDYENVEEVIAHELAHQWFGNLVTMKWWDDLWLNEGFATFREVLWS 347 (859)
T ss_pred CCCcc------ccccceeEEeeeEEeeCcccchhHHHHHHHHHHHHHHhhhcccceeeccCHHHHHHhhhhHHHHHHHHH
Confidence 77887 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC-ccchhhhhhhchhhhHHHHhhhhcCCCccc
Q psy5250 765 HHLFP-EYDIWTQFVTDNLVRALELDALKSSHPTQF 799 (1102)
Q Consensus 765 ~~~~p-~~~~~~~~~~~~l~~a~~~da~~~s~p~~~ 799 (1102)
+...| +|..|+.|.......++..|+.+++|||..
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~hPi~~ 383 (859)
T COG0308 348 EDLGGRAWKRWEDFRTLRTSIALAEDSLPSSHPIRV 383 (859)
T ss_pred HHhcchHHHHHHHHHHHhhhHHHhhccccccCCccc
Confidence 99999 999999999988777999999999999985
No 6
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=100.00 E-value=2.1e-45 Score=458.31 Aligned_cols=215 Identities=26% Similarity=0.377 Sum_probs=154.5
Q ss_pred ccCcEEEEEEEE----ecCCEEEEecCCceEEEEEEEecCCccccceEEEeCCCeEEEEEeCCccCCceEEEEEEEEE--
Q psy5250 3 EKKPFERYFKIV----SETKELKLHVIDLDFKKVQLELADGKVLTPETKISTEDETITLTFSETLPVGEVKLLFEYVG-- 76 (1102)
Q Consensus 3 ~~~~~~~~~~v~----~~t~~i~lh~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~l~~g~~~l~i~y~g-- 76 (1102)
++..+.+.+.|. ++.+.|+||+.+|+|.+|.+. |+.... ..|..+++.|+|... ++.+.++|.|.+
T Consensus 21 ~~~~v~g~~~i~~~~~~~~~~l~Ld~~~L~I~sV~v~---g~~~~~-~~~~~~~~~L~I~~~----~~~~~l~i~~~~~p 92 (863)
T TIGR02414 21 EETVVRARLTVRRNPDGNGAPLVLDGEELKLLSIAID---GKPLAA-GDYQLDDETLTIASV----PESFTLEIETEIHP 92 (863)
T ss_pred CCeEEEEEEEEEEecCCCCCcEEEEecCCEEEEEEEC---CEecCc-ceEEEcCCEEEEeeC----CccEEEEEEEEeec
Confidence 345667776664 345689999999999999883 433221 235555678888742 356889998865
Q ss_pred eeCCCccceeeeeccccCCcccceeEEeeeecCCCCcccccCCchhhcccceEeecccCcccccccceeeccccCCCcce
Q psy5250 77 ELNDKMKGFYRSKYRSVLHDEDRYMAVTQFCSTDARRCFPCWDEPAVKAKFAISLSVPSSKVALSNMVRIAILDDEDRYM 156 (1102)
Q Consensus 77 ~~~~~~~G~y~~~y~~~~~~~~~~l~~Tqf~p~~aR~~fPC~DeP~~katf~i~~~~~~~~~~lsN~~~~~~~~~~~~~~ 156 (1102)
..+....|+|+++| ++
T Consensus 93 ~~n~~l~GlY~s~~----------~~------------------------------------------------------ 108 (863)
T TIGR02414 93 EENTSLEGLYKSGG----------NF------------------------------------------------------ 108 (863)
T ss_pred ccCCCCeEEEEeCC----------eE------------------------------------------------------
Confidence 44456789998652 23
Q ss_pred EEeccccCCCccccccCCCCCceeeEEEEEEecCC-c-eeeecccccccccCCCCeEEEEEEeCCCCCceeEEEEEecce
Q psy5250 157 AVTQFELTDARRCFPCWDEPAVKAKFSISLSVPNN-K-VALSNMPVKSESPQPDGHRLLQFETSPIMSTYLVAVVVGEFD 234 (1102)
Q Consensus 157 ~~t~feP~~Ar~~FPc~DeP~~KAtF~itI~~p~~-~-~alSng~~~~~~~~~~~~~~~~F~~t~pmstYl~a~~vg~f~ 234 (1102)
+|||||++||++|||+|+|++||+|+++|++|++ | .++|||++.+.....+++++++|+.++|||+||+||++|+|+
T Consensus 109 -~TQ~Ep~gaR~ifpc~DeP~~kAtf~vtI~~p~~~y~v~lSNg~~~~~~~~~~g~~~~~f~~t~pmptYLfA~vaGdf~ 187 (863)
T TIGR02414 109 -CTQCEAEGFRRITYFPDRPDVMSRYTVTITADKKKYPVLLSNGNKIASGELPDGRHWAEWEDPFPKPSYLFALVAGDLD 187 (863)
T ss_pred -EEEecCCCCCcCCCCCCCCCCceEEEEEEEECCCcceEEEeCCccccceecCCCeEEEEEeCCCCcChhHheEEEeCCE
Confidence 4555555555556666666678888888888885 6 568999877665456788999999999999999999999999
Q ss_pred EEeee----ecCCeEEEEEecCCchhhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCeeec
Q psy5250 235 YVEET----SSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAI 290 (1102)
Q Consensus 235 ~~~~~----s~~gi~irv~~~p~~~~~~~~al~~~~~~L~~~e~~fGi~YPl~kld~Vav 290 (1102)
..+.. ++.++++++|++|+..++++++++.++++|+|||++||++||++|+|+|++
T Consensus 188 ~~~~~~~t~sg~~v~l~iy~~p~~~~~~~~al~~~~~~L~~~E~~fG~pYPl~k~diVav 247 (863)
T TIGR02414 188 VLEDTFTTKSGREVALRVYVEEGNKDKCDHAMESLKKAMKWDEEVFGLEYDLDIFMIVAV 247 (863)
T ss_pred EEEEEeeccCCCceEEEEEEccCcHHHHHHHHHHHHHHHHHHHHHhCCCCChhhccEEec
Confidence 87643 345799999999987777777777777777777766665566555554444
No 7
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=100.00 E-value=1.6e-43 Score=430.89 Aligned_cols=213 Identities=18% Similarity=0.270 Sum_probs=154.5
Q ss_pred CccCcEEEEEEE----Eec-CCEEEEecCCceEEEEEEEecCCccccceEEE----eCCCeEEEEEeCCccCCc-eEEEE
Q psy5250 2 LEKKPFERYFKI----VSE-TKELKLHVIDLDFKKVQLELADGKVLTPETKI----STEDETITLTFSETLPVG-EVKLL 71 (1102)
Q Consensus 2 ~~~~~~~~~~~v----~~~-t~~i~lh~~~l~i~~~~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~l~~g-~~~l~ 71 (1102)
++++.|+|++.+ .++ ++.|+||+.+|+|++|.+. |.. ..++. +..++.|+|.++.++.+| .+.++
T Consensus 24 ~~~~~~~G~v~i~l~~~~~~~~~i~Ld~~~L~I~~V~v~---g~~--~~~~~~~~~~~~g~~L~I~l~~~l~~g~~~~l~ 98 (601)
T TIGR02411 24 FTKRKLSGSVTFTLQSLTDNLNSLVLDTSYLDIQKVTIN---GLP--ADFAIGERKEPLGSPLTISLPIATSKNKELVLN 98 (601)
T ss_pred ecCCEEEEEEEEEEEECCCCCcEEEEECCCCEEEEEEEC---Ccc--cceEeccccCCCCCeEEEEeCCccCCCceEEEE
Confidence 456778777554 333 4789999999999999874 221 11222 235688999999999999 89999
Q ss_pred EEEEEeeCCCccceeeeeccccCCcccceeEEeeeecCCCCcccccCCchhhcccceEeecccCcccccccceeeccccC
Q psy5250 72 FEYVGELNDKMKGFYRSKYRSVLHDEDRYMAVTQFCSTDARRCFPCWDEPAVKAKFAISLSVPSSKVALSNMVRIAILDD 151 (1102)
Q Consensus 72 i~y~g~~~~~~~G~y~~~y~~~~~~~~~~l~~Tqf~p~~aR~~fPC~DeP~~katf~i~~~~~~~~~~lsN~~~~~~~~~ 151 (1102)
|.|+|.. +..|+++..+....|
T Consensus 99 I~Y~~~~--~~~gl~~~~~~~t~g-------------------------------------------------------- 120 (601)
T TIGR02411 99 ISFSTTP--KCTALQWLTPEQTSG-------------------------------------------------------- 120 (601)
T ss_pred EEEeecC--CCceeEEecccccCC--------------------------------------------------------
Confidence 9999864 345777665443333
Q ss_pred CCcceEEeccccCCCccccccCCCCCceeeEEEEEEecCCceeeecccccccccCCCCeEEEEEEeCCCCCceeEEEEEe
Q psy5250 152 EDRYMAVTQFELTDARRCFPCWDEPAVKAKFSISLSVPNNKVALSNMPVKSESPQPDGHRLLQFETSPIMSTYLVAVVVG 231 (1102)
Q Consensus 152 ~~~~~~~t~feP~~Ar~~FPc~DeP~~KAtF~itI~~p~~~~alSng~~~~~~~~~~~~~~~~F~~t~pmstYl~a~~vg 231 (1102)
+.++++.|||||++||+||||||+|++|++|+++|++| +.|++||...... .++..+++|..++|||+||+||+||
T Consensus 121 ~~~py~~Tq~qp~~AR~~fPC~D~P~~Katf~~~I~~P--~~av~sg~~~~~~--~~~~~~~~F~~t~pmptYLia~avG 196 (601)
T TIGR02411 121 KKHPYLFSQCQAIHARSVIPCQDTPSVKSTYTAEVESP--LPVLMSGIPDGET--SNDPGKYLFKQKVPIPAYLIALASG 196 (601)
T ss_pred CCCCEEEECCcccchheeeeecCCcccceEEEEEEeeC--cceeccCCccccc--cCCCceEEEEeCCCcchhhheeeec
Confidence 34566788999999999999999999999999999999 8888666544433 2345678999999999999999999
Q ss_pred cceEEeeeecCCeEEEEEecCCchhhHHHHHH-HHHHHHHHHHHhhCCCCCCCCCC
Q psy5250 232 EFDYVEETSSDGVLVRVYTPVGKREQGQFALH-VASKVLPFYKDYFNIAYPLPKID 286 (1102)
Q Consensus 232 ~f~~~~~~s~~gi~irv~~~p~~~~~~~~al~-~~~~~L~~~e~~fGi~YPl~kld 286 (1102)
+|+... .|..+++|++|+..+.+++++. .++++|+++|+++| |||++|+|
T Consensus 197 ~~~~~~----~g~~~~v~~~p~~~~~~~~~~~~~~~~~l~~~e~~~~-pYp~~k~d 247 (601)
T TIGR02411 197 DLASAP----IGPRSSVYSEPEQLEKCQYEFEHDTENFIKTAEDLIF-PYEWGQYD 247 (601)
T ss_pred cceecc----cCCceEEEccchhHHHHHHHHHHhHHHHHHHHHHhCC-CCcCccce
Confidence 998643 3667899999876666655554 45555555444433 44444433
No 8
>PRK14015 pepN aminopeptidase N; Provisional
Probab=100.00 E-value=8.2e-41 Score=418.49 Aligned_cols=360 Identities=23% Similarity=0.332 Sum_probs=269.1
Q ss_pred ccCcEEEEEEEEec-----CCEEEEecCCceEEEEEEEecCCccccceEEEeCCCeEEEEEeCCccCCceEEEEEEEEEe
Q psy5250 3 EKKPFERYFKIVSE-----TKELKLHVIDLDFKKVQLELADGKVLTPETKISTEDETITLTFSETLPVGEVKLLFEYVGE 77 (1102)
Q Consensus 3 ~~~~~~~~~~v~~~-----t~~i~lh~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~l~~g~~~l~i~y~g~ 77 (1102)
++..+.+.+.+... .+.|+||+.+|+|.+|.+. |..... ..|..+++.|+|.. + ++.++++|.|.+.
T Consensus 33 ~~~~v~g~~~i~~~~~~~~~~~l~LD~~~L~I~sV~v~---G~~~~~-~~~~~~~~~L~I~~---l-~~~~~l~I~y~~~ 104 (875)
T PRK14015 33 DKTRVTARLQVRRNPDAAHSAPLVLDGEDLELLSLALD---GQPLAP-SAYELDEEGLTIEN---L-PDRFTLEIETEID 104 (875)
T ss_pred CCcEEEEEEEEEEccCCCCCceEEEEcCCCEEEEEEEC---CEEcCc-cceEEcCCEEEEec---C-CccEEEEEEEEEe
Confidence 45667777777543 4789999999999999873 443221 13444567888883 2 2358898988865
Q ss_pred eC--CCccceeeeeccccCCcccceeEEeeeecCCCCcccccCCchhhcccceEeecccCcccccccceeeccccCCCcc
Q psy5250 78 LN--DKMKGFYRSKYRSVLHDEDRYMAVTQFCSTDARRCFPCWDEPAVKAKFAISLSVPSSKVALSNMVRIAILDDEDRY 155 (1102)
Q Consensus 78 ~~--~~~~G~y~~~y~~~~~~~~~~l~~Tqf~p~~aR~~fPC~DeP~~katf~i~~~~~~~~~~lsN~~~~~~~~~~~~~ 155 (1102)
.. ....|+|++.+
T Consensus 105 P~~n~~l~Gly~s~~----------------------------------------------------------------- 119 (875)
T PRK14015 105 PEANTALEGLYRSGG----------------------------------------------------------------- 119 (875)
T ss_pred cCCCCCceeeEEECC-----------------------------------------------------------------
Confidence 43 44679998541
Q ss_pred eEEeccccCCCccccccCCCCCceeeEEEEEEecC-Cc-eeeecccccccccCCCCeEEEEEEeCCCCCceeEEEEEecc
Q psy5250 156 MAVTQFELTDARRCFPCWDEPAVKAKFSISLSVPN-NK-VALSNMPVKSESPQPDGHRLLQFETSPIMSTYLVAVVVGEF 233 (1102)
Q Consensus 156 ~~~t~feP~~Ar~~FPc~DeP~~KAtF~itI~~p~-~~-~alSng~~~~~~~~~~~~~~~~F~~t~pmstYl~a~~vg~f 233 (1102)
+.+|||||++||+||||+|+|+.||+|+++|++|+ .| +++|||++.+.....+++++++|..++|||+||+||++|+|
T Consensus 120 ~~~TQ~Ep~gAR~~fPc~D~P~~KAtf~itI~~p~~~~~~~lSNG~l~~~~~~~~g~~~~~w~~~~PmpsYL~Al~aGdf 199 (875)
T PRK14015 120 MFCTQCEAEGFRRITYFLDRPDVLARYTVRIEADKAKYPVLLSNGNLVESGELPDGRHWATWEDPFPKPSYLFALVAGDL 199 (875)
T ss_pred EEEEeccccCcCCcccCCCCCCCCeeEEEEEEEccccCeEEecCCccccceeccCCeEEEEEEeCCCcccceEEEEEeCC
Confidence 34677777888888888888888999999999999 48 67999998877544678899999999999999999999999
Q ss_pred eEEeee----ecCCeEEEEEecCCchhhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCeeecCC-----------------
Q psy5250 234 DYVEET----SSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAIPV----------------- 292 (1102)
Q Consensus 234 ~~~~~~----s~~gi~irv~~~p~~~~~~~~al~~~~~~L~~~e~~fGi~YPl~kld~VavPd----------------- 292 (1102)
+..+.. ++.++++++|++|+..+.++++++.++++|+|||++||++||++|+|+|++|+
T Consensus 200 ~~~~d~~~~~~g~~vpl~iy~~p~~~~~~~~al~~~~~~L~~~E~~FG~pYP~~k~diVavp~f~~GaMEN~Gl~~f~~~ 279 (875)
T PRK14015 200 DVLEDTFTTRSGREVALEIYVEPGNLDKCDHAMDSLKKSMKWDEERFGLEYDLDIFMIVAVDDFNMGAMENKGLNIFNSK 279 (875)
T ss_pred EEEEEEeeccCCCeEEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhCCCCChhhhCEEeCCCCCCcccccccccccccc
Confidence 987642 33469999999999999999999999999999999999999999999999987
Q ss_pred ---------------------CCcchh--------ccccchhhhhHh-HHHHHHHHHHhcC-CCCccc-----CCC-cc-
Q psy5250 293 ---------------------GHPSEV--------EEIFDDISYNKG-ASIIRMLQKYIGD-GKYPIL-----LRP-SF- 334 (1102)
Q Consensus 293 ---------------------aHElaH--------~~WW~dlWLnEG-Aty~e~l~~~~~~-~~~~~~-----l~~-~~- 334 (1102)
+||++| ++||+++||||| |+|++........ +.+... ++. .+
T Consensus 280 ~lL~~~~~~t~~~~~~i~~vIaHElaHqWFGNlVT~~~W~dLWLnEGFAty~e~~~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (875)
T PRK14015 280 YVLADPETATDADYERIESVIAHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSADLGSRAVKRIEDVRVLRAAQFA 359 (875)
T ss_pred eEecCcccCCHHHHHHHHHHHHHHHHHHHHhCcceecchhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccc
Confidence 799999 889999999999 9999865543322 221100 000 01
Q ss_pred --ccccCCc------cccccccchhhccchHHHHHHHHHHhcC-----Cc------------------------------
Q psy5250 335 --QIPVGHP------SEVEEIFDDISYNKGASIIRMLQKYIGD-----GV------------------------------ 371 (1102)
Q Consensus 335 --~i~~~~~------~~i~~~~~~~~Y~KG~~vl~mL~~~iG~-----g~------------------------------ 371 (1102)
..+..+| ..+..+|+..+|.||+.++|||+.++|+ |+
T Consensus 360 ~D~~~~a~pi~p~~~~~i~~~f~~~~Y~KGA~vLrMLr~~lGde~F~~gLr~Yl~~~~~~~at~~Df~~ale~asg~DL~ 439 (875)
T PRK14015 360 EDAGPMAHPVRPDSYIEINNFYTATVYEKGAEVIRMLHTLLGEEGFRKGMDLYFERHDGQAVTCEDFVAAMEDASGRDLS 439 (875)
T ss_pred ccccccCCCCCCcchhhHHhcccchhhhHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhCCCHH
Confidence 1122222 3456788999999999999999999996 11
Q ss_pred --------------------c-----------C--------CCCCcEEEeeeEEecCC--CCc--------cceeEeeec
Q psy5250 372 --------------------N-----------S--------SSDSLWYVPLSFCTQAN--PSE--------EVFSAEMST 402 (1102)
Q Consensus 372 --------------------~-----------~--------~~~~~W~IPl~~~~~~~--~~~--------~~~~~~l~~ 402 (1102)
. + .....|+|||.+..-+. ... ....+++++
T Consensus 440 ~f~~W~~q~G~P~l~v~~~~d~~~~~~~ltl~Q~~~~~~~~~~~~~~~iPl~i~l~~~~G~~~~~~~~~~~~~~~l~l~~ 519 (875)
T PRK14015 440 QFRRWYSQAGTPRVTVSDEYDAAAGTYTLTLSQSTPPTPGQPEKQPLHIPVAIGLLDPDGKELPLQLEGEPVERVLELTE 519 (875)
T ss_pred HHHHHHcCCCCCeEEEEEEEcCCCCEEEEEEEEeCCCCCCCCCCceEEEEEEEEEEcCCCceeeccccCCccceEEEEcC
Confidence 0 0 01246999999953222 111 133568889
Q ss_pred ceeEEEecCCCCCceEEecCCceeEEEEEcChh
Q psy5250 403 RVTQVTIPDVSPGHWIKLNPGTVGYYRVKYPRE 435 (1102)
Q Consensus 403 ~~~~~~i~~~~~~~wi~lN~~~~GyYRV~Yd~~ 435 (1102)
.++++.+++.+..--+.++.+...+=++.|+..
T Consensus 520 ~~q~f~f~~~~~~p~~s~~r~fsapv~~~~~~~ 552 (875)
T PRK14015 520 AEQTFTFENVAERPVPSLLRGFSAPVKLEYDYS 552 (875)
T ss_pred CeeEEEEcCCCCCceEEecCCCCCcEEEeCCCC
Confidence 999999987643334788889888888888643
No 9
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=100.00 E-value=1.1e-39 Score=412.37 Aligned_cols=544 Identities=18% Similarity=0.288 Sum_probs=370.4
Q ss_pred ecCCceeEEEEEcChhh----HHhhhhhhccCCCCcchhhhhHHHHHHHHHcCCccHHHHHHHHHhhccccchhhHHHHH
Q psy5250 420 LNPGTVGYYRVKYPRET----LAQFIPSVEDKSIPPLDRLSLLDDLFALAQVGEVSLVEVLKMIQSMTHEDNYTVWITIC 495 (1102)
Q Consensus 420 lN~~~~GyYRV~Yd~~~----~~~L~~~l~~~~l~~~dR~~Li~Daf~la~ag~l~y~~~l~l~~~l~~E~~y~vW~~a~ 495 (1102)
.+....|+||..++.+. ++++.+..++..|||+|++.+.. . ++ -.+....++.
T Consensus 100 ~~~~~~Gl~~~~~~~~g~~~~~Tq~ep~~Ar~~fPcfDeP~~KA--------t-------f~--ltit~p~~~~------ 156 (831)
T TIGR02412 100 YTNTGEGLHRFVDPVDGEVYLYTQFEPADARRVFAVFDQPDLKA--------N-------FK--FSVKAPEDWT------ 156 (831)
T ss_pred ecCCCceEEEEEeCCCCeEEEEECCCCcCceeeEecCCCCCCce--------e-------EE--EEEEECCCce------
Confidence 34556799987764333 58888888899999999998741 0 00 0122233332
Q ss_pred HHHHhhhhhhccchhhhhhhccCcccccCCCCCCceEEEEeecCCcceeEEEEEEecceeeeeeecCCeEEEEEeecccc
Q psy5250 496 NCLQKIDLLLSNTEYHHLFYQFGPVKSESPQPDGHRLLQFETSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKR 575 (1102)
Q Consensus 496 ~~L~~l~~~ls~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (1102)
+++|++. .++.+ .+|.+.++|++||||||||+||+||+|+.++.. .+|+++++|++++..
T Consensus 157 --------v~sNg~~----------~~~~~-~~~~~~~~F~~t~pmstYL~a~~vG~f~~~~~~-~~gvpi~v~~~~~~~ 216 (831)
T TIGR02412 157 --------VISNSRE----------TDVTP-EPADRRWEFPETPKLSTYLTAVAAGPYHSVQDE-SRSYPLGIYARRSLA 216 (831)
T ss_pred --------EECCCcc----------ccccc-cCCCeEEEecCCCCcccceEEEEEeceEEEeec-CCCEEEEEEECcchh
Confidence 3444322 22222 345678899999999999999999999999854 579999999999865
Q ss_pred hh--hhHHHHHHhhhhHHHHhhhccCCCCCccceeccCCCccccccccCccccccccccccccCCCCcccccchhhhhhh
Q psy5250 576 EQ--GQFALHVASKVLPFYKDYFNIAYPLPKIDLVALNPGTVGYYRVKYPRETLAQFIPSVEDKSIPPLDRLSLLDDLFA 653 (1102)
Q Consensus 576 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (1102)
.+ +.++++++.++|+||+++||+|||++|+|+|++ |+
T Consensus 217 ~~~~~~~al~~~~~~l~~~e~~fg~pYP~~k~d~V~v-P~---------------------------------------- 255 (831)
T TIGR02412 217 QYLDADAIFTITRQGLAFFHRKFGYPYPFKKYDQIFV-PE---------------------------------------- 255 (831)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCEEEc-CC----------------------------------------
Confidence 43 578999999999999999999999999999999 65
Q ss_pred ccCCCCCCcccCccccCccccccCCCCCCCcCCCCCCCCCCcccccceeeeecceecccCCCchhhhhhhHHHHHHHHHh
Q psy5250 654 CHGELGPSHLSGSVSSGRLSEHIGYHPTEHSSGCGARVGSPVMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELA 733 (1102)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~e~~g~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~e~a 733 (1102)
|..|+ |||||+|+|+|..| +++.. +...+++++.+|+||+|
T Consensus 256 -------------------------------f~~Ga------MEn~Glit~~e~~l-~~~~~-~~~~~~~~~~viaHElA 296 (831)
T TIGR02412 256 -------------------------------FNAGA------MENAGCVTFAENFL-HRAEA-TRAEKENRAGVILHEMA 296 (831)
T ss_pred -------------------------------CCCCc------ccccceeeechhhc-cCCcC-CHHHHHHHHHHHHHHHH
Confidence 77787 99999999999944 55443 45778899999999999
Q ss_pred hhhccCccchhhhhHHHHHHHHHHHHHHhhcCCCCCccchhhhhhhchhhhHHHHhhhhcCCCcccch------------
Q psy5250 734 HQWFGNLVTMEWWTHLWLNEGYASFVEFLCVHHLFPEYDIWTQFVTDNLVRALELDALKSSHPTQFVT------------ 801 (1102)
Q Consensus 734 ~~wfg~~~~~~~~~~~wl~e~~a~~~~~~~~~~~~p~~~~~~~~~~~~l~~a~~~da~~~s~p~~~~~------------ 801 (1102)
||||||||||+||+++|||||||+|++++..+...|.|++|.+|..+....++..|++.++||+...+
T Consensus 297 HqWFGnlVT~~wW~dlWLnEGFAty~e~~~~~~~~~~~~~~~~f~~~~~~~a~~~D~~~~t~Pi~~~~~~~~~~~~~fd~ 376 (831)
T TIGR02412 297 HMWFGDLVTMRWWNDLWLNESFAEYMGTLASAEATEYTDAWTTFAAQGKQWAYEADQLPTTHPIVADVADLADALSNFDG 376 (831)
T ss_pred HHHhCCEeccccccchhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhcccCCCCCccCCCCHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999998888999999999999996422
Q ss_pred ------hhhHhHHHH--------HHhhcCCCceeecCCcchHHH---------------HHHHhhhc-------------
Q psy5250 802 ------DNLVRALEL--------DALKSSHPIELYQNSDMQEEK---------------DRISRSFS------------- 839 (1102)
Q Consensus 802 ------~~~~~~~~~--------~~l~~~~~~~~~~~~~~~~~~---------------~~~~~~~~------------- 839 (1102)
..+++|++. ..++...-.+.|+|++..+-. +..+...|
T Consensus 377 isY~KGa~vL~mL~~~lGee~F~~glr~Yl~~~~~~nat~~Dl~~~l~~~sg~dl~~~~~~W~~~~G~P~l~v~~~~~~~ 456 (831)
T TIGR02412 377 ITYAKGASVLKQLVAWVGEEAFFAGVNAYFKRHAFGNATLDDLIDSLAKASGRDLSAWSDAWLETAGVNTLTPEITTDGG 456 (831)
T ss_pred ccchhHHHHHHHHHHHHCHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHcCCCCceEEEEEEECCC
Confidence 135566641 111111112344454322111 11111001
Q ss_pred --------c-CC-CHHH-----HH----HHH-------------------------Hhhc-c----cc--cc--------
Q psy5250 840 --------A-LK-DPEL-----LR----KVL-------------------------DFSM-S----DL--VR-------- 860 (1102)
Q Consensus 840 --------~-~~-~~~l-----l~----~~l-------------------------~~~~-~----~~--~~-------- 860 (1102)
. .. .++. .. .+. +|++ + +. +.
T Consensus 457 ~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~N~~~~gyyrv~yd~~~~~~ 536 (831)
T TIGR02412 457 VVSALYPESSGPPRPHRIAIGLYDLDRDDLRRTTLVPLTISGERTAVPQLVGKRAPALVLLNDDDLTYAKVRLDPTSFDT 536 (831)
T ss_pred eEEEEEEecCCCCCCeeEEEeeeecCCCcceeeeEEEEEEecCceeehhhcCCCCCCEEEEeCCCcEEEEEECCHHHHHH
Confidence 0 00 0000 00 000 0000 0 00 00
Q ss_pred ----------ccchHHHHHHh------h-------------c-ccccchhHHHHHHhhHH-HHHHHhcC-----------
Q psy5250 861 ----------AQDSVFVIISA------A-------------Q-TKTGRELAWEFLKNNYA-TFTERYKG----------- 898 (1102)
Q Consensus 861 ----------~~d~~~~~~~~------~-------------~-~~~~~~~~w~~~~~n~~-~l~~~~~~----------- 898 (1102)
.-++..++.++ + . ..+....+|..+..+.. .+...+..
T Consensus 537 l~~~l~~~~~~~~R~~l~~d~~~~~~~g~~~~~~~l~l~~~~l~~E~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 616 (831)
T TIGR02412 537 VLAALSKLPDPLSRAVVWASLWDSVRDGELSPDDYLSTVFAHVPSETDYAVVQQVLSQLLRAVAAQYAPIADRPALLAVA 616 (831)
T ss_pred HHHHhhhCCChhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 00000000000 0 0 01122346666555555 44433210
Q ss_pred ---------------CchhhhHHhhhhhcCCHHHHHHHHHHHhcCCC-chhhhHHHHHHHHH-H-Hh-HHHHHhhhhhhh
Q psy5250 899 ---------------GLLGRLVKHTTENFASESHAQEVTEFFTKNPT-SWIERTVQQSVETI-R-LN-SECLKRDGEALY 959 (1102)
Q Consensus 899 ---------------~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~-~~~~~~~~~~~~~~-~-~~-~~w~~~~~~~ly 959 (1102)
....+.+....+..+++++++.+.++|+.... ..++..++..+-.. . .+ .+|.. ....+
T Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~~~~~~~~--l~~~~ 694 (831)
T TIGR02412 617 ALACRSLRRAMESGPDFQLRWLRALALTATDPDSLRRLLSLLDGKIKGLALDPDLRWRIIARLAALGFIDADD--IAAEL 694 (831)
T ss_pred HHHHHHHHhccCCCccHHHHHHHHHHHhcCCHHHHHHHHHHHhCCCCCcccCHhHHHHHHHHHHhcCCCCHHH--HHHHH
Confidence 01112333334555677777788877765321 12445555544222 1 11 22221 34567
Q ss_pred cccccHHHHHHHHHHhcCCCCHHHHHHHHHhhcC-CccccccHHHHHHHhccCchhhHHHHHHHHHhHHHHHHHcCc--c
Q psy5250 960 QNSDMQEEKDRISRSFSALKDPELLRKVLDFSMS-DLVRAQDSVFVIISAAQTKTGRELAWDFLKNNYATFTERYKG--G 1036 (1102)
Q Consensus 960 ~~s~~~sEK~~iL~ALacs~dp~lL~r~L~~sL~-~~Ir~QD~~~v~~sVa~n~~G~~laW~Fl~~NW~~I~~r~~~--~ 1036 (1102)
+..+++++|..+|.||||++||+++++.+...++ +.++.||+..++.+++ ++.|+.++|+|+++||+.|.++|+. .
T Consensus 695 ~~~~~~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 773 (831)
T TIGR02412 695 ERDNTASGEEHAAAARAARPDAAAKREAWQKLVTTDALPNSKQRAIIEGFW-QPEQALLLAAYAERYFANLADIWKRRGP 773 (831)
T ss_pred hcCCCHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCCCCHHHHHHHHhhcC-CCCcHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 7888999999999999999999999976666665 5699999999999998 5699999999999999999999974 3
Q ss_pred hHHHhHHhhcc--cCCCHHHHHHHHHHhhc--CCCchHHhHHHHHHHHHHHHHHHHH
Q psy5250 1037 LLGRLVKHTTE--NFASESHAQEVTEFFTK--NPTSWIERTVQQSVETIRLNSECLK 1089 (1102)
Q Consensus 1037 ~l~~lI~~~t~--~f~T~~el~ev~~Ff~~--~~~~~~~r~~~qalE~i~~Ni~W~~ 1089 (1102)
.+.+.+...+. .+++++.++++++||+. +...+..|.+.|+++.++.++++++
T Consensus 774 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~~~~d~~~r~~~~~~ 830 (831)
T TIGR02412 774 AIAQAISRGLFPATAVNYDTLATADKWLRSQADASPGLRRTLLERRDAAERALRARE 830 (831)
T ss_pred HHHHHHHHhcCCcccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhHHHHHHHhhc
Confidence 55555554444 89999999999999974 3445789999999999999999875
No 10
>PRK14015 pepN aminopeptidase N; Provisional
Probab=100.00 E-value=4.4e-34 Score=358.11 Aligned_cols=257 Identities=26% Similarity=0.348 Sum_probs=198.0
Q ss_pred ecCCceeEEEEEcChhhHHhhhhhhccCCCCcchhhhhHHHHHHHHHcCCccHHHHHHHHHhhcccc-chhhHHHHHHHH
Q psy5250 420 LNPGTVGYYRVKYPRETLAQFIPSVEDKSIPPLDRLSLLDDLFALAQVGEVSLVEVLKMIQSMTHED-NYTVWITICNCL 498 (1102)
Q Consensus 420 lN~~~~GyYRV~Yd~~~~~~L~~~l~~~~l~~~dR~~Li~Daf~la~ag~l~y~~~l~l~~~l~~E~-~y~vW~~a~~~L 498 (1102)
.|....|+|+.++ ..+++..+..++..+||.|++.... .+ . -.+.... .|
T Consensus 107 ~n~~l~Gly~s~~--~~~TQ~Ep~gAR~~fPc~D~P~~KA--------tf---~------itI~~p~~~~---------- 157 (875)
T PRK14015 107 ANTALEGLYRSGG--MFCTQCEAEGFRRITYFLDRPDVLA--------RY---T------VRIEADKAKY---------- 157 (875)
T ss_pred CCCCceeeEEECC--EEEEeccccCcCCcccCCCCCCCCe--------eE---E------EEEEEccccC----------
Confidence 3566789999876 4578888888889999999999731 00 0 0011111 11
Q ss_pred HhhhhhhccchhhhhhhccCcccccCCCCCCceEEEEeecCCcceeEEEEEEecceeeeee----ecCCeEEEEEeeccc
Q psy5250 499 QKIDLLLSNTEYHHLFYQFGPVKSESPQPDGHRLLQFETSPIMSTYLVAVVVGEFDYVEET----SSDGVLVRVYTPVGK 574 (1102)
Q Consensus 499 ~~l~~~ls~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 574 (1102)
..+++|. +..+....++|.+..+|+.++||||||+||+||+|+.++.+ +..+|++++|.+|+.
T Consensus 158 ---~~~lSNG----------~l~~~~~~~~g~~~~~w~~~~PmpsYL~Al~aGdf~~~~d~~~~~~g~~vpl~iy~~p~~ 224 (875)
T PRK14015 158 ---PVLLSNG----------NLVESGELPDGRHWATWEDPFPKPSYLFALVAGDLDVLEDTFTTRSGREVALEIYVEPGN 224 (875)
T ss_pred ---eEEecCC----------ccccceeccCCeEEEEEEeCCCcccceEEEEEeCCEEEEEEeeccCCCeEEEEEEEeCCc
Confidence 1123443 22233334678889999999999999999999999998753 224599999999999
Q ss_pred chhhhHHHHHHhhhhHHHHhhhccCCCCCccceeccCCCccccccccCccccccccccccccCCCCcccccchhhhhhhc
Q psy5250 575 REQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVALNPGTVGYYRVKYPRETLAQFIPSVEDKSIPPLDRLSLLDDLFAC 654 (1102)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (1102)
..++.+++..++++++||+++||++||++|+|+|++ |+
T Consensus 225 ~~~~~~al~~~~~~L~~~E~~FG~pYP~~k~diVav-p~----------------------------------------- 262 (875)
T PRK14015 225 LDKCDHAMDSLKKSMKWDEERFGLEYDLDIFMIVAV-DD----------------------------------------- 262 (875)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCChhhhCEEeC-CC-----------------------------------------
Confidence 888999999999999999999999999999999999 65
Q ss_pred cCCCCCCcccCccccCccccccCCCCCCCcCCCCCCCCCCcccccceeeeecceecccCCCchhhhhhhHHHHHHHHHhh
Q psy5250 655 HGELGPSHLSGSVSSGRLSEHIGYHPTEHSSGCGARVGSPVMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAH 734 (1102)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~e~~g~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~e~a~ 734 (1102)
|..|| |||||+++|+|.++|.+++..+...++.+..+|+||+||
T Consensus 263 ------------------------------f~~Ga------MEN~Gl~~f~~~~lL~~~~~~t~~~~~~i~~vIaHElaH 306 (875)
T PRK14015 263 ------------------------------FNMGA------MENKGLNIFNSKYVLADPETATDADYERIESVIAHEYFH 306 (875)
T ss_pred ------------------------------CCCcc------cccccccccccceEecCcccCCHHHHHHHHHHHHHHHHH
Confidence 77787 999999999999999999888888889999999999999
Q ss_pred hhccCccchhhhhHHHHHHHHHHHHHHhhcC-CCCCcc-chhhhhhhchhhhHHHHhhhhcCCCcc
Q psy5250 735 QWFGNLVTMEWWTHLWLNEGYASFVEFLCVH-HLFPEY-DIWTQFVTDNLVRALELDALKSSHPTQ 798 (1102)
Q Consensus 735 ~wfg~~~~~~~~~~~wl~e~~a~~~~~~~~~-~~~p~~-~~~~~~~~~~l~~a~~~da~~~s~p~~ 798 (1102)
|||||+|||+||+++||||||++|++..... ...+.+ ++...+... ...+..|+...+||+.
T Consensus 307 qWFGNlVT~~~W~dLWLnEGFAty~e~~~~~~~~~~~~~~~~~~~~l~--~~~~~~D~~~~a~pi~ 370 (875)
T PRK14015 307 NWTGNRVTCRDWFQLSLKEGLTVFRDQEFSADLGSRAVKRIEDVRVLR--AAQFAEDAGPMAHPVR 370 (875)
T ss_pred HHHhCcceecchhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hhcccccccccCCCCC
Confidence 9999999999999999999999999755432 223333 122222221 1234567777778874
No 11
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=99.97 E-value=1e-31 Score=307.23 Aligned_cols=125 Identities=38% Similarity=0.700 Sum_probs=108.0
Q ss_pred hhcccccHHHHHHHHHHhcCCCCHHHHHHHHHhhcCC-ccccccHHHHHHHhc-cCchhhHHHHHHHHHhHHHHHHHcCc
Q psy5250 958 LYQNSDMQEEKDRISRSFSALKDPELLRKVLDFSMSD-LVRAQDSVFVIISAA-QTKTGRELAWDFLKNNYATFTERYKG 1035 (1102)
Q Consensus 958 ly~~s~~~sEK~~iL~ALacs~dp~lL~r~L~~sL~~-~Ir~QD~~~v~~sVa-~n~~G~~laW~Fl~~NW~~I~~r~~~ 1035 (1102)
+|+..++++||..+|.||||++||++++++|++++++ .|+.||+..++.+++ .|+.|+.++|+|+++||+.|.+++++
T Consensus 194 ~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~ 273 (324)
T PF11838_consen 194 LYKNSTSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGT 273 (324)
T ss_dssp HHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-T
T ss_pred HHhccCCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcC
Confidence 4555568899999999999999999999999999985 599999999999999 99999999999999999999999986
Q ss_pred c--hHHHhHHhhcccCCCHHHHHHHHHHhhc--CCCchHHhHHHHHHHHHH
Q psy5250 1036 G--LLGRLVKHTTENFASESHAQEVTEFFTK--NPTSWIERTVQQSVETIR 1082 (1102)
Q Consensus 1036 ~--~l~~lI~~~t~~f~T~~el~ev~~Ff~~--~~~~~~~r~~~qalE~i~ 1082 (1102)
+ .+++++..+++.++|+++++++++||+. ++.++..|+++|++|.|+
T Consensus 274 ~~~~~~~~~~~~~~~~~t~~~~~~~~~f~~~~~~~~~~~~r~l~q~~e~Ir 324 (324)
T PF11838_consen 274 NSSALSRVIKSFAGNFSTEEQLDELEEFFEDKPKPPPGLRRALAQSLETIR 324 (324)
T ss_dssp TSHCCHHHHHCCCTT--SHHHHHHHHHHHHHHCTCCCTTTHHCHHHHHHHH
T ss_pred CChHHHHHHHHHhccCCCHHHHHHHHHHHhhCcCCChHHHHHHHHHHHhcC
Confidence 5 6899999999999999999999999954 445678899999999986
No 12
>KOG1047|consensus
Probab=99.95 E-value=5.7e-28 Score=273.84 Aligned_cols=296 Identities=21% Similarity=0.325 Sum_probs=230.1
Q ss_pred EEEEEecCCEEEEecCCceEEEEEEEecCCcccc-ceEEEeCCCeEEEEEeCCccCCc-eEEEEEEEEEeeCCCccceee
Q psy5250 10 YFKIVSETKELKLHVIDLDFKKVQLELADGKVLT-PETKISTEDETITLTFSETLPVG-EVKLLFEYVGELNDKMKGFYR 87 (1102)
Q Consensus 10 ~~~v~~~t~~i~lh~~~l~i~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~l~~g-~~~l~i~y~g~~~~~~~G~y~ 87 (1102)
.+++......|+|+.++|.|.+|.+...+-.... ..-.+...++.+.+..+..- .| ..++.|.|.-. ++-.|+-+
T Consensus 41 ~l~~~~~~~~~~LDt~~l~i~~v~i~~~~~~~~i~~~~~~~g~~~~~~l~~~~~~-a~~~~~l~i~y~Ts--~~atalqw 117 (613)
T KOG1047|consen 41 TLRLLEDNLKLVLDTRDLSIRNVTINGEEPPFRIGFRQPFLGSGQKLVLPAPSSK-AGERLQLLIWYETS--PSATALQW 117 (613)
T ss_pred EEEeccCCceeEeeecceeeEEeeccCCCCCCccCcccCCCCCceEEEecccccc-ccCceEEEEEEecc--CCcceeEE
Confidence 3556677777999999999999998644311111 12344445556666655433 45 78999999642 23334433
Q ss_pred eeccccCCcccceeEEeeeecCCCCcccccCCchhhcccceEeecccCcccccccceeeccccCCCcceEEeccccCCCc
Q psy5250 88 SKYRSVLHDEDRYMAVTQFCSTDARRCFPCWDEPAVKAKFAISLSVPSSKVALSNMVRIAILDDEDRYMAVTQFELTDAR 167 (1102)
Q Consensus 88 ~~y~~~~~~~~~~l~~Tqf~p~~aR~~fPC~DeP~~katf~i~~~~~~~~~~lsN~~~~~~~~~~~~~~~~t~feP~~Ar 167 (1102)
-+-....| +.+.++.+|||...||
T Consensus 118 L~peQT~g--------------------------------------------------------k~~PylfsQCQAIhaR 141 (613)
T KOG1047|consen 118 LNPEQTSG--------------------------------------------------------KKHPYLFSQCQAIHAR 141 (613)
T ss_pred eccccccC--------------------------------------------------------CCCCchHHHHHHhHHh
Confidence 33222222 4556778999999999
Q ss_pred cccccCCCCCceeeEEEEEEecCCceeeecccccccccCCCCeEEEEEEeCCCCCceeEEEEEecceEEeeeecCCeEEE
Q psy5250 168 RCFPCWDEPAVKAKFSISLSVPNNKVALSNMPVKSESPQPDGHRLLQFETSPIMSTYLVAVVVGEFDYVEETSSDGVLVR 247 (1102)
Q Consensus 168 ~~FPc~DeP~~KAtF~itI~~p~~~~alSng~~~~~~~~~~~~~~~~F~~t~pmstYl~a~~vg~f~~~~~~s~~gi~ir 247 (1102)
..|||+|.|+.|.+|+..|.+|.++++++++....+++..+++..+.|..-.|+++|++||++|+....+ -|..-+
T Consensus 142 si~PC~DTPavK~ty~a~v~vp~~l~a~mSai~~~~~~~~~~~~~f~f~q~~pIP~YLiai~~G~L~s~e----IgpRs~ 217 (613)
T KOG1047|consen 142 SIFPCQDTPAVKSTYTAEVEVPMGLTALMSAIPAGEKPGSNGRAIFRFKQEVPIPSYLIAIAVGDLESRE----IGPRSR 217 (613)
T ss_pred eeccccCCCcceeEEEEEEEcCCcceeeeeccccccCCCCCCcceEEEEeccCchhhhHHHhhccccccc----cCCccc
Confidence 9999999999999999999999999999888776666666778899999999999999999999987544 356679
Q ss_pred EEecCCchhhHHHHHH-HHHHHHHHHHHhhCCCCCCCCCCeeecCC------------------------------CCcc
Q psy5250 248 VYTPVGKREQGQFALH-VASKVLPFYKDYFNIAYPLPKIDLVAIPV------------------------------GHPS 296 (1102)
Q Consensus 248 v~~~p~~~~~~~~al~-~~~~~L~~~e~~fGi~YPl~kld~VavPd------------------------------aHEl 296 (1102)
||+.|...+.+++-+. .++++|.--|+.+| +|++..+|++++|. +||+
T Consensus 218 VwaEp~~~~a~~~ef~~~~e~~L~~Ae~l~G-pY~WgryDllvlPpSFP~gGMENPcltF~TpTllaGDrsl~~vIaHEI 296 (613)
T KOG1047|consen 218 VWAEPCLLDACQEEFAGETEDFLKAAEKLFG-PYVWGRYDLLVLPPSFPFGGMENPCLTFVTPTLLAGDRSLVDVIAHEI 296 (613)
T ss_pred eecchhhhHHHHHHHHhhhHHHHHHHHHHcC-CcccccceEEEecCCCCcccccCcceeeecchhhcCCcchhhHHHHHh
Confidence 9999999999988888 89999999999999 99999999999997 8999
Q ss_pred hh--------ccccchhhhhHh-HHHHHHHHHHhcCCCCccc---------CCCcc-----ccc-----cCCc-cccccc
Q psy5250 297 EV--------EEIFDDISYNKG-ASIIRMLQKYIGDGKYPIL---------LRPSF-----QIP-----VGHP-SEVEEI 347 (1102)
Q Consensus 297 aH--------~~WW~dlWLnEG-Aty~e~l~~~~~~~~~~~~---------l~~~~-----~i~-----~~~~-~~i~~~ 347 (1102)
|| ..-|++.||||| |+|+|-.....++++-... ++++. ... ...+ .+++..
T Consensus 297 AHSWtGNlVTN~sWehfWLNEGfTvylErrI~g~~~g~~~~~f~a~~gw~~L~~~~d~~g~~~~~tkLv~kl~~~dPDda 376 (613)
T KOG1047|consen 297 AHSWTGNLVTNASWEHFWLNEGFTVYLERRIVGRLYGEAYRQFEALIGWRELRPSMDLFGETSEFTKLVVKLENVDPDDA 376 (613)
T ss_pred hhhhcccccccCccchhhhcccchhhhhhhhhhhhcchhHHHHHHhcChhhhhhHHHhcCCCcccchhhhhccCCChHHh
Confidence 99 555999999999 9999998888877764321 33321 111 1111 578899
Q ss_pred cchhhccchHHHHHHHHHHhcC
Q psy5250 348 FDDISYNKGASIIRMLQKYIGD 369 (1102)
Q Consensus 348 ~~~~~Y~KG~~vl~mL~~~iG~ 369 (1102)
|+.+.|.||..+|..|++.+|+
T Consensus 377 fs~VpYeKG~~ll~~Le~~lG~ 398 (613)
T KOG1047|consen 377 FSQVPYEKGFALLFYLEQLLGD 398 (613)
T ss_pred hhcCchhhhhHHHHHHHHHhCC
Confidence 9999999999999999999886
No 13
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=99.95 E-value=6.7e-26 Score=287.11 Aligned_cols=418 Identities=28% Similarity=0.487 Sum_probs=324.5
Q ss_pred cCcEEEEEEEEec----CC--EEEEecCCceEEEEEEEecCCccccceEEEeCCCeEEEEEeCCccC---CceEEEEEEE
Q psy5250 4 KKPFERYFKIVSE----TK--ELKLHVIDLDFKKVQLELADGKVLTPETKISTEDETITLTFSETLP---VGEVKLLFEY 74 (1102)
Q Consensus 4 ~~~~~~~~~v~~~----t~--~i~lh~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~l~---~g~~~l~i~y 74 (1102)
+..|++.+.+.-. .. .|+||+.+|+|.++++.+.... ....++.+...+......+.. ++...+.+.+
T Consensus 37 ~~~~~g~~~i~~~~~~~~~~~~lvld~~~l~i~~v~idg~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~l~i~~~~ 113 (859)
T COG0308 37 KTTFEGSVTIRLDAGWRSGADPLVLDAVGLEIRSVKIDGKALT---AWYRLDGDALTITVAPPIPERSERPFTLAITYEF 113 (859)
T ss_pred ccEEEEEEEEEEeccccCCCCeEEEeccccEEEEEEEcCcccc---ccccccCccceeeeccccccccCCCccEEEEEEe
Confidence 4778888887552 22 3999999999999999643211 113343433333333332222 3356777788
Q ss_pred EEeeC-CCccceeeeeccccCCcccceeEEeeeecCCCCcccccCCchhhcccceEeecccCcccccccceeeccccCCC
Q psy5250 75 VGELN-DKMKGFYRSKYRSVLHDEDRYMAVTQFCSTDARRCFPCWDEPAVKAKFAISLSVPSSKVALSNMVRIAILDDED 153 (1102)
Q Consensus 75 ~g~~~-~~~~G~y~~~y~~~~~~~~~~l~~Tqf~p~~aR~~fPC~DeP~~katf~i~~~~~~~~~~lsN~~~~~~~~~~~ 153 (1102)
.+..+ ....|+|++.+.+ .+++.|||||++|||+|||+|+|++||||+++|..++...++|||+
T Consensus 114 ~~~~s~~~~~Gly~~~~~~------~~~~~TQ~Ea~~aR~~fpc~D~P~~katf~~~i~~~k~~~~iSN~~--------- 178 (859)
T COG0308 114 TGPVSNDTLEGLYRSGYGG------KPYLITQCEAEGARRIFPCIDEPDVKATFTLTIRADKGPKLISNGN--------- 178 (859)
T ss_pred cccccCccccceeecCCCC------CeeEEeecccCCCceeeecCCCCCCcceeEEEEEecCcceeeecCC---------
Confidence 87776 5788999999865 3889999999999999999999988888887777776666666654
Q ss_pred cceEEeccccCCCccccccCCCCCceeeEEEEEEecCCceeeecccccccccCCCCeEEEEEEeCCCCCceeEEEEEecc
Q psy5250 154 RYMAVTQFELTDARRCFPCWDEPAVKAKFSISLSVPNNKVALSNMPVKSESPQPDGHRLLQFETSPIMSTYLVAVVVGEF 233 (1102)
Q Consensus 154 ~~~~~t~feP~~Ar~~FPc~DeP~~KAtF~itI~~p~~~~alSng~~~~~~~~~~~~~~~~F~~t~pmstYl~a~~vg~f 233 (1102)
........+++++++|..++||||||+|+++|+|
T Consensus 179 ----------------------------------------------~~~~~~~~~g~~~~~f~~~~~mptYL~al~~G~~ 212 (859)
T COG0308 179 ----------------------------------------------LIDGGTLVDGRKIVKFEDTPPMPTYLFALVAGDL 212 (859)
T ss_pred ----------------------------------------------ccccccccCCcEEEEEcCCCCcchHhhheeeecc
Confidence 3333333456899999999999999999999999
Q ss_pred eEEeeeec---CCeEEEEEecCCchhhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCeeecCC------------------
Q psy5250 234 DYVEETSS---DGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAIPV------------------ 292 (1102)
Q Consensus 234 ~~~~~~s~---~gi~irv~~~p~~~~~~~~al~~~~~~L~~~e~~fGi~YPl~kld~VavPd------------------ 292 (1102)
...+.... .++++++|++++....++++++.+.++++||+++||++||+++ ++|++|+
T Consensus 213 ~~~~~~~~~~~~~v~l~iy~~~g~~~~a~~~~~~~~~~~~~~e~~fg~~y~l~~-~~V~v~~f~~GaMEN~Gl~tf~~~~ 291 (859)
T COG0308 213 EVFRDKFDTRSRDVPLEIYVPPGVLDRAKYALDETKRSIEFYEEYFGLPYALPI-DIVAVPDFSAGAMENWGLVTFREKY 291 (859)
T ss_pred eeeeeeeccCCCCeeEEEEecCcchhhhhhhHHHHHHHhhhHHHhcCCCCCCcc-cEEeccCCCCccccccceeEEeeeE
Confidence 88876532 4899999999999999999999999999999999999999999 9999998
Q ss_pred --------------------CCcchh--------ccccchhhhhHh-HHHHHHHHHHhcCC-CCccc-----CCCc----
Q psy5250 293 --------------------GHPSEV--------EEIFDDISYNKG-ASIIRMLQKYIGDG-KYPIL-----LRPS---- 333 (1102)
Q Consensus 293 --------------------aHElaH--------~~WW~dlWLnEG-Aty~e~l~~~~~~~-~~~~~-----l~~~---- 333 (1102)
+||+|| |+||+++||||| |+|+++...+.+.+ .|..| .+.+
T Consensus 292 ll~~~~~at~~~~~~~~~viaHElaHqWfGnlVT~~~W~~lWLnEgfat~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (859)
T COG0308 292 LLADPETATDSDYENVEEVIAHELAHQWFGNLVTMKWWDDLWLNEGFATFREVLWSEDLGGRAWKRWEDFRTLRTSIALA 371 (859)
T ss_pred EeeCcccchhHHHHHHHHHHHHHHhhhcccceeeccCHHHHHHhhhhHHHHHHHHHHHhcchHHHHHHHHHHHhhhHHHh
Confidence 799999 999999999999 99999999999998 66554 1111
Q ss_pred ---------cccccCCccccccccchhhccchHHHHHHHHHHhcC-----Cc----------------------------
Q psy5250 334 ---------FQIPVGHPSEVEEIFDDISYNKGASIIRMLQKYIGD-----GV---------------------------- 371 (1102)
Q Consensus 334 ---------~~i~~~~~~~i~~~~~~~~Y~KG~~vl~mL~~~iG~-----g~---------------------------- 371 (1102)
+......+.+++.+||.++|.||+.|+||++.++|+ |+
T Consensus 372 ~D~~~~~hPi~~~~~~~~ei~~~fD~i~Y~KGs~vlrml~~~lG~e~F~kgl~~yf~~h~~~~~~~~Dl~~a~~~~sg~d 451 (859)
T COG0308 372 EDSLPSSHPIRVDVYDPKEINDFFDAIVYEKGASVLRMLETLLGEEAFRKGLSLYFKRHAGGNATTMDLWKALEDASGKD 451 (859)
T ss_pred hccccccCCcccCCCCccchhhhcchhhcchhHHHHHHHHHHHCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhCCc
Confidence 233444457889999999999999999999999996 11
Q ss_pred -----------------------c------------C--CCCCcEEEeeeEEecCCCCccceeEeeecceeEEEecCCC-
Q psy5250 372 -----------------------N------------S--SSDSLWYVPLSFCTQANPSEEVFSAEMSTRVTQVTIPDVS- 413 (1102)
Q Consensus 372 -----------------------~------------~--~~~~~W~IPl~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~- 413 (1102)
. . .....|+||+.+....... .....+.+...++.+...+
T Consensus 452 l~~~~~~w~~q~G~P~l~v~~~~~~~~~l~~~q~~~~~~~~~~~~~iPl~~~~~~~~~--~~~~~~~~~~~t~~~~~~~~ 529 (859)
T COG0308 452 LSAFFESWLSQAGYPVLTVSVRYDDFFKLTQKQFTPPGQEEKRPWPIPLAIKLLDGGG--VKVLLLTEGEQTVTFELVGI 529 (859)
T ss_pred HHHHHHHHHhCCCCCceeeeeeccccEEEEEEEeccCCCccCceeeeccEEEecCCCC--ceeeeeeccceEEEEecccC
Confidence 0 0 1235899999987665442 2234455555666665432
Q ss_pred -CCceEEecCCceeEEEEEcChhhHHhhhhhhccCCCCcchhhhhHHHHHHHHHcCCccHHHHHHHHHhhccccchhh
Q psy5250 414 -PGHWIKLNPGTVGYYRVKYPRETLAQFIPSVEDKSIPPLDRLSLLDDLFALAQVGEVSLVEVLKMIQSMTHEDNYTV 490 (1102)
Q Consensus 414 -~~~wi~lN~~~~GyYRV~Yd~~~~~~L~~~l~~~~l~~~dR~~Li~Daf~la~ag~l~y~~~l~l~~~l~~E~~y~v 490 (1102)
+---+++|....|+|++.|+.+.+..++.... .+...+|++++.|..++..+|..+.......+....++....+
T Consensus 530 ~~~~~~~~~~~~~~~~~~~y~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 605 (859)
T COG0308 530 PPFPSLKVNDSAPVFYRVDYSDQSLSKLLQHDP--RLEAAQRLALVADRRALTAAGKGSAEDKLALVSRAFNAELLYV 605 (859)
T ss_pred CccceeeccCCccceEEEecCHHHHHHHHhhhh--hhhHHHHHhhhhhHHHHHHhcccchhHHHHHHHHHhhhhhhHH
Confidence 23468999999999999999999988766553 7899999999999999999999999999888877655544443
No 14
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=99.84 E-value=1.6e-20 Score=235.73 Aligned_cols=143 Identities=19% Similarity=0.255 Sum_probs=95.4
Q ss_pred CCcchh--------ccccchhhhhHh-HHHHHHHHHHhcCCCC-c-cc----CCC-cc---ccccCC------ccccccc
Q psy5250 293 GHPSEV--------EEIFDDISYNKG-ASIIRMLQKYIGDGKY-P-IL----LRP-SF---QIPVGH------PSEVEEI 347 (1102)
Q Consensus 293 aHElaH--------~~WW~dlWLnEG-Aty~e~l~~~~~~~~~-~-~~----l~~-~~---~i~~~~------~~~i~~~ 347 (1102)
+||++| ++||+++||||| |+|++.+......+.. . +. ++. .+ ..+..+ ...+..+
T Consensus 288 aHElaHqWfGNlVT~~~W~~LWLnEGfAty~e~~~~~~~~~~~~~~~~~~~~lr~~~f~~D~~p~~~Pi~~~~~~~i~~~ 367 (863)
T TIGR02414 288 AHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSADMTSRAVKRIEDVRLLRAHQFPEDAGPMAHPVRPESYVEINNF 367 (863)
T ss_pred HHHHHHHHhcceeeecchhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhcccccccCCCCCCcchhhHHhc
Confidence 899999 889999999999 9999965443322211 0 00 110 00 111122 2355678
Q ss_pred cchhhccchHHHHHHHHHHhcC-----Cc------------------------------------------------c--
Q psy5250 348 FDDISYNKGASIIRMLQKYIGD-----GV------------------------------------------------N-- 372 (1102)
Q Consensus 348 ~~~~~Y~KG~~vl~mL~~~iG~-----g~------------------------------------------------~-- 372 (1102)
|+.++|.||+.|++||+.++|+ |+ +
T Consensus 368 y~~i~Y~KGA~vLrML~~~LGee~F~~gLr~Yl~r~~~~~at~~Df~~ale~asg~dL~~f~~W~~q~G~P~v~v~~~yd 447 (863)
T TIGR02414 368 YTATVYEKGAEVIRMLHTLLGEEGFRKGMDLYFSRHDGQAVTCEDFVAAMEDASGRDLNQFRRWYSQAGTPVLEVKENYD 447 (863)
T ss_pred cchHHhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhCCCHHHHHHHHcCCCCceeEEEEEEc
Confidence 8999999999999999999996 11 0
Q ss_pred -----------C--------CCCCcEEEeeeEEec--CCCCc---------cceeEeeecceeEEEecCCCCCceEEecC
Q psy5250 373 -----------S--------SSDSLWYVPLSFCTQ--ANPSE---------EVFSAEMSTRVTQVTIPDVSPGHWIKLNP 422 (1102)
Q Consensus 373 -----------~--------~~~~~W~IPl~~~~~--~~~~~---------~~~~~~l~~~~~~~~i~~~~~~~wi~lN~ 422 (1102)
+ .....|+|||.+..- ++... ....+.+++.++++.+++.+..-.+-++.
T Consensus 448 ~~~~~~~lt~~Q~~~~~~~~~~~~~~~iPl~i~l~~~~G~~~~~~~~~~~~~~~~l~l~~~~~~f~f~~~~~~p~~sl~r 527 (863)
T TIGR02414 448 AAKKTYTLTVRQSTPPTPGQTEKKPLHIPIAVGLLGPNGRKLMLSLDGERDTTRVLELTEAEQTFVFEGIAEKPVPSLLR 527 (863)
T ss_pred CCCCEEEEEEEEeCCCCCCCCcCCceEEEEEEEEEeCCCCEeeecccCCCCcceEEEEccCEEEEEEcCCCCCCeeeecC
Confidence 0 012479999999432 22110 12346788999999998765444588889
Q ss_pred CceeEEEEEcChh
Q psy5250 423 GTVGYYRVKYPRE 435 (1102)
Q Consensus 423 ~~~GyYRV~Yd~~ 435 (1102)
+...+=++.|+..
T Consensus 528 ~fsapv~l~~~~~ 540 (863)
T TIGR02414 528 GFSAPVNLEYPYS 540 (863)
T ss_pred CCCceEEEeCCCC
Confidence 9999999988644
No 15
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=99.83 E-value=8.2e-21 Score=223.06 Aligned_cols=236 Identities=23% Similarity=0.364 Sum_probs=147.0
Q ss_pred eEEEEEeCCccCCc-eEEEEEEEEEeeCCCccceeeeeccccCCcccceeEEeeeecCCCCcccccCCchhhcccceEee
Q psy5250 53 ETITLTFSETLPVG-EVKLLFEYVGELNDKMKGFYRSKYRSVLHDEDRYMAVTQFCSTDARRCFPCWDEPAVKAKFAISL 131 (1102)
Q Consensus 53 ~~l~i~~~~~l~~g-~~~l~i~y~g~~~~~~~G~y~~~y~~~~~~~~~~l~~Tqf~p~~aR~~fPC~DeP~~katf~i~~ 131 (1102)
.+|+|.+.+.+... .+.++..|..+-+.. .. ++++|||+|.+||++|||||||.+||+|+++|
T Consensus 92 ~~L~I~y~g~~~~~~~G~~~~~y~~~~~~~------------~~----~~~~t~~~p~~ar~~fPc~D~p~~ka~f~~~i 155 (390)
T PF01433_consen 92 YTLRIEYSGKISDDSSGLYRSSYTDQTNGN------------TR----WYIYTQFEPNGARRWFPCFDEPSFKATFDLTI 155 (390)
T ss_dssp EEEEEEEEEECBSSSSEEEEEEEE-GTSSS------------ET----CEEEEE-TTTTGGGTSSB--STTSEEEEEEEE
T ss_pred EEEEEEEeecccccccccccceeecccccc------------cC----CceeecccccccceeeeeeccCCccceEEEee
Confidence 58899999988876 788889998611111 23 67889999999999999999999999999999
Q ss_pred cccCcccccccceeeccccCCCcceEEeccccCCCccccccCCCCCceeeEEEEEEecCCceeeecccccccccCCCC-e
Q psy5250 132 SVPSSKVALSNMVRIAILDDEDRYMAVTQFELTDARRCFPCWDEPAVKAKFSISLSVPNNKVALSNMPVKSESPQPDG-H 210 (1102)
Q Consensus 132 ~~~~~~~~lsN~~~~~~~~~~~~~~~~t~feP~~Ar~~FPc~DeP~~KAtF~itI~~p~~~~alSng~~~~~~~~~~~-~ 210 (1102)
++|++++++|||+.......++++ ....|..+...|....+++-|+.........+ .
T Consensus 156 ~~p~~~~~~sng~~~~~~~~~~~~----------------------~~~~f~~t~p~~~yl~a~~vg~~~~~~~~~~~~~ 213 (390)
T PF01433_consen 156 THPKDYTALSNGPLEEEESNDDGW----------------------KTTTFETTPPMPTYLFAFAVGDFESVEVTTKSGV 213 (390)
T ss_dssp EEETTTEEEESSEEEEEEEETTTE----------------------EEEEEEEEEEEEGGG--EEEESEEEEEEETTTEE
T ss_pred eccccceeeccccccccccccccc----------------------eeEeeecccccCchhhhhhcCccccccccccccc
Confidence 999999999999876655333222 12457777788888888777765443222222 2
Q ss_pred EEEEEEeCCCCCceeEEEEEecceEEeeeecCCeEEEEEecCCchhhHHHHHHHHHHHHHHHH-Hh-hC------C-CCC
Q psy5250 211 RLLQFETSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYK-DY-FN------I-AYP 281 (1102)
Q Consensus 211 ~~~~F~~t~pmstYl~a~~vg~f~~~~~~s~~gi~irv~~~p~~~~~~~~al~~~~~~L~~~e-~~-fG------i-~YP 281 (1102)
....|... ... +......+.+.+...-.-+++. .| |+ + .|+
T Consensus 214 ~v~~~~~~-~~~-----------------------------~~~~~~~~~~~~~l~~~~~~~g~~yp~~k~~~v~~p~~~ 263 (390)
T PF01433_consen 214 PVRVYARP-GDE-----------------------------EQLQFALDIAPKALEYYEEYFGIPYPFKKLDIVAVPDFP 263 (390)
T ss_dssp EEEEEEEC-TCG-----------------------------GGHHHHHHHHHHHHHHHHHHHTS--SSSEEEEEEEST-S
T ss_pred chheeehh-hhH-----------------------------HHHHHHHHhhHHHHHHHHhhccccceecceeEEEEeccc
Confidence 22222211 100 0111122222222333333333 22 22 1 122
Q ss_pred C---CCCCeeecCC----------------------CCcchh--------ccccchhhhhHh-HHHHHHHHHHhcCCCCc
Q psy5250 282 L---PKIDLVAIPV----------------------GHPSEV--------EEIFDDISYNKG-ASIIRMLQKYIGDGKYP 327 (1102)
Q Consensus 282 l---~kld~VavPd----------------------aHElaH--------~~WW~dlWLnEG-Aty~e~l~~~~~~~~~~ 327 (1102)
. ....+|...+ +||+|| ++||+|+||+|| |+|+++++.+..++.+.
T Consensus 264 ~~~me~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~iahElahqWfGn~vt~~~w~d~WL~Eg~a~y~~~~~~~~~~~~~~ 343 (390)
T PF01433_consen 264 FGGMENWGLITYRESYLLYDPDISTIGDKQEIASLIAHELAHQWFGNLVTPKWWSDLWLNEGFATYLEYLILEKLFGEWQ 343 (390)
T ss_dssp SSEE--TTEEEEEGGGTS-STTTS-HHHHHHHHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHHGHHH
T ss_pred cccccccccccccccccccCcccccchhhhhhHHHHHHHHHHHHhccCCccccchhhhHHHHHHHHHHHHhHhhccCccc
Confidence 2 1223332221 899999 889999999999 99999999999998665
Q ss_pred cc----------------CCCc--cccccCCccccccccchhhccch
Q psy5250 328 IL----------------LRPS--FQIPVGHPSEVEEIFDDISYNKG 356 (1102)
Q Consensus 328 ~~----------------l~~~--~~i~~~~~~~i~~~~~~~~Y~KG 356 (1102)
++ .... +......+.++..+|+.++|+||
T Consensus 344 ~~~~~~~~~~~~~~~~d~~~~~~pl~~~~~~~~~~~~~f~~~~Y~KG 390 (390)
T PF01433_consen 344 MMELFLVQEMQRALREDALPNSHPLSSEVEDPSDIDDMFDDISYNKG 390 (390)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTCCCSSSSSSSESCGGGGSSHHHHHHH
T ss_pred chhhhhhhhHHHHHHHhhcCCCcceEeCCCCCCChHHhcCccccCCC
Confidence 43 0111 22335556788999999999998
No 16
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=99.80 E-value=5.1e-20 Score=225.20 Aligned_cols=220 Identities=16% Similarity=0.224 Sum_probs=119.8
Q ss_pred EEeeeecCCCCcccccCCchhhcccceEeecccCcccccc-cceeeccccCCCcceEEeccccCCCccccccCCCCCcee
Q psy5250 102 AVTQFCSTDARRCFPCWDEPAVKAKFAISLSVPSSKVALS-NMVRIAILDDEDRYMAVTQFELTDARRCFPCWDEPAVKA 180 (1102)
Q Consensus 102 ~~Tqf~p~~aR~~fPC~DeP~~katf~i~~~~~~~~~~ls-N~~~~~~~~~~~~~~~~t~feP~~Ar~~FPc~DeP~~KA 180 (1102)
+.|||||++||++|||||+|++||||+++|++| +.+++ |++..... ++. ...
T Consensus 126 ~~Tq~qp~~AR~~fPC~D~P~~Katf~~~I~~P--~~av~sg~~~~~~~-~~~------------------------~~~ 178 (601)
T TIGR02411 126 LFSQCQAIHARSVIPCQDTPSVKSTYTAEVESP--LPVLMSGIPDGETS-NDP------------------------GKY 178 (601)
T ss_pred EEECCcccchheeeeecCCcccceEEEEEEeeC--cceeccCCcccccc-CCC------------------------ceE
Confidence 358999999999999999999999999999999 78874 55532221 111 123
Q ss_pred eEEEEEEecCCceeeecccccccccCCCCeEEEEEEeCCCCCc--eeEE-----------EEEecceEEeeeecCCeEEE
Q psy5250 181 KFSISLSVPNNKVALSNMPVKSESPQPDGHRLLQFETSPIMST--YLVA-----------VVVGEFDYVEETSSDGVLVR 247 (1102)
Q Consensus 181 tF~itI~~p~~~~alSng~~~~~~~~~~~~~~~~F~~t~pmst--Yl~a-----------~~vg~f~~~~~~s~~gi~ir 247 (1102)
.|..+..+|....+++-|+...... +.....|........ |.+. -..|+|.. ....+
T Consensus 179 ~F~~t~pmptYLia~avG~~~~~~~---g~~~~v~~~p~~~~~~~~~~~~~~~~~l~~~e~~~~pYp~------~k~d~- 248 (601)
T TIGR02411 179 LFKQKVPIPAYLIALASGDLASAPI---GPRSSVYSEPEQLEKCQYEFEHDTENFIKTAEDLIFPYEW------GQYDL- 248 (601)
T ss_pred EEEeCCCcchhhheeeeccceeccc---CCceEEEccchhHHHHHHHHHHhHHHHHHHHHHhCCCCcC------ccceE-
Confidence 4666666777777777776654321 111222221100000 0000 00111110 00000
Q ss_pred EEecCCchhhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCeeecCCCCcchh--------ccccchhhhhHh-HHHHHHHH
Q psy5250 248 VYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAIPVGHPSEV--------EEIFDDISYNKG-ASIIRMLQ 318 (1102)
Q Consensus 248 v~~~p~~~~~~~~al~~~~~~L~~~e~~fGi~YPl~kld~VavPdaHElaH--------~~WW~dlWLnEG-Aty~e~l~ 318 (1102)
+..+|+-.-. +++.- .+.|.+..+- .-++- .+. --+||+|| ++||+|+||||| |+|+++++
T Consensus 249 vvlpp~f~~G---gMEN~--~ltf~~~~ll---~~d~s-~~~-viaHElAHqWfGNlVT~~~W~d~WLnEGfaty~e~~~ 318 (601)
T TIGR02411 249 LVLPPSFPYG---GMENP--NLTFATPTLI---AGDRS-NVD-VIAHELAHSWSGNLVTNCSWEHFWLNEGWTVYLERRI 318 (601)
T ss_pred EEecCccccc---ccccc--cceeeccccc---cCChh-hhh-hHHHHHHhhccCceeecCCchHHHHHhhHHHHHHHHH
Confidence 0111110000 00000 0001110000 00000 000 00899999 899999999999 99999999
Q ss_pred HHhcCCCCccc---------CCCcc-----ccccC------CccccccccchhhccchHHHHHHHHHHhc
Q psy5250 319 KYIGDGKYPIL---------LRPSF-----QIPVG------HPSEVEEIFDDISYNKGASIIRMLQKYIG 368 (1102)
Q Consensus 319 ~~~~~~~~~~~---------l~~~~-----~i~~~------~~~~i~~~~~~~~Y~KG~~vl~mL~~~iG 368 (1102)
.+.++|+.... +...+ ..++. .+.++...|+.++|.||+.+|+||++.+|
T Consensus 319 ~~~~~~e~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~dp~~~f~~i~Y~KGa~~L~mL~~~lG 388 (601)
T TIGR02411 319 VGRLYGEKTRHFSALIGWGELQESVKTLGEDPEYTKLVVDLKDNDPDDAFSSVPYEKGFNFLFYLEQLLG 388 (601)
T ss_pred HHHhcCcHHHHHHHHHhHHHHHHHHHhhcCCCCCCcccccCCCCChhhhccccchhhHHHHHHHHHHHhC
Confidence 99888775321 00000 00111 11267788999999999999999999998
No 17
>KOG1047|consensus
Probab=99.77 E-value=1.9e-19 Score=204.96 Aligned_cols=159 Identities=31% Similarity=0.538 Sum_probs=134.5
Q ss_pred cccCCCCCCceEEEEeecCCcceeEEEEEEecceeeeeeecCCeEEEEEeecccchhhhHHHH-HHhhhhHHHHhhhccC
Q psy5250 521 KSESPQPDGHRLLQFETSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALH-VASKVLPFYKDYFNIA 599 (1102)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 599 (1102)
..+.+.++|.....|+.-.++|.||+|+++|+....+.. .+-|||++|.......+-+. .+.++|.-=++.+| |
T Consensus 175 ~~~~~~~~~~~~f~f~q~~pIP~YLiai~~G~L~s~eIg----pRs~VwaEp~~~~a~~~ef~~~~e~~L~~Ae~l~G-p 249 (613)
T KOG1047|consen 175 AGEKPGSNGRAIFRFKQEVPIPSYLIAIAVGDLESREIG----PRSRVWAEPCLLDACQEEFAGETEDFLKAAEKLFG-P 249 (613)
T ss_pred cccCCCCCCcceEEEEeccCchhhhHHHhhccccccccC----CccceecchhhhHHHHHHHHhhhHHHHHHHHHHcC-C
Confidence 346677788889999999999999999999999876643 33499999987766666665 78888888899999 9
Q ss_pred CCCCccceeccCCCccccccccCccccccccccccccCCCCcccccchhhhhhhccCCCCCCcccCccccCccccccCCC
Q psy5250 600 YPLPKIDLVALNPGTVGYYRVKYPRETLAQFIPSVEDKSIPPLDRLSLLDDLFACHGELGPSHLSGSVSSGRLSEHIGYH 679 (1102)
Q Consensus 600 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (1102)
|++..+|++.+||+
T Consensus 250 Y~WgryDllvlPpS------------------------------------------------------------------ 263 (613)
T KOG1047|consen 250 YVWGRYDLLVLPPS------------------------------------------------------------------ 263 (613)
T ss_pred cccccceEEEecCC------------------------------------------------------------------
Confidence 99999999999886
Q ss_pred CCCCcCCCCCCCCCCcccccceeeeecceecccCCCchhhhhhhHHHHHHHHHhhhhccCccchhhhhHHHHHHHHHHHH
Q psy5250 680 PTEHSSGCGARVGSPVMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHLWLNEGYASFV 759 (1102)
Q Consensus 680 ~~~~~~~~~a~~~~~~~e~~g~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~e~a~~wfg~~~~~~~~~~~wl~e~~a~~~ 759 (1102)
|..|+ |||. .+||--.+||-+.+. .+.+||||+||.|||||||-.-|.|.||||||++|.
T Consensus 264 -----FP~gG------MENP-cltF~TpTllaGDrs--------l~~vIaHEIAHSWtGNlVTN~sWehfWLNEGfTvyl 323 (613)
T KOG1047|consen 264 -----FPFGG------MENP-CLTFVTPTLLAGDRS--------LVDVIAHEIAHSWTGNLVTNASWEHFWLNEGFTVYL 323 (613)
T ss_pred -----CCccc------ccCc-ceeeecchhhcCCcc--------hhhHHHHHhhhhhcccccccCccchhhhcccchhhh
Confidence 88887 9997 566666777765543 488999999999999999999999999999999999
Q ss_pred HHhhcCCCCCc
Q psy5250 760 EFLCVHHLFPE 770 (1102)
Q Consensus 760 ~~~~~~~~~p~ 770 (1102)
|......++.+
T Consensus 324 ErrI~g~~~g~ 334 (613)
T KOG1047|consen 324 ERRIVGRLYGE 334 (613)
T ss_pred hhhhhhhhcch
Confidence 99877766555
No 18
>KOG1932|consensus
Probab=99.72 E-value=1.5e-16 Score=193.06 Aligned_cols=264 Identities=17% Similarity=0.232 Sum_probs=194.1
Q ss_pred ccCcEEEEEEE-----EecCCEEEEecCCceEEEEEEEecCCc------------------cc----c-----ce-EEEe
Q psy5250 3 EKKPFERYFKI-----VSETKELKLHVIDLDFKKVQLELADGK------------------VL----T-----PE-TKIS 49 (1102)
Q Consensus 3 ~~~~~~~~~~v-----~~~t~~i~lh~~~l~i~~~~~~~~~~~------------------~~----~-----~~-~~~~ 49 (1102)
++..+.|..++ ..+-+.|+||++++.|.+|.|.+..++ .+ . .. ...+
T Consensus 40 ~~rsi~G~tEitI~P~~~nL~~i~l~~kql~I~sV~V~~~~~~f~y~d~~q~~~~~~~~~~~l~~~s~~~~~~~~y~~l~ 119 (1180)
T KOG1932|consen 40 SKRSIIGFTEITIQPLVPNLSVIVLHSKQLRILSVLVNGSPTKFIYNDPTQNDCTDEIWQRVLDPASQSHFLAVQYEDLD 119 (1180)
T ss_pred eeeEEEeEEEEEEecCCCCcceEEEeccccEEEEEEecCcccceeecchhhhhhhhhhhhhhhhhhhhhhhHHHhhhccc
Confidence 44555555443 345679999999999999998653110 00 0 00 2334
Q ss_pred CCCeEEEEEeCCccCC-c----eEEEEEEEEEeeCCCccceeeeeccccCCcccceeEEeeeecCCCCcccccCCchhhc
Q psy5250 50 TEDETITLTFSETLPV-G----EVKLLFEYVGELNDKMKGFYRSKYRSVLHDEDRYMAVTQFCSTDARRCFPCWDEPAVK 124 (1102)
Q Consensus 50 ~~~~~l~i~~~~~l~~-g----~~~l~i~y~g~~~~~~~G~y~~~y~~~~~~~~~~l~~Tqf~p~~aR~~fPC~DeP~~k 124 (1102)
..+..|.|..++++.+ | ...++|.|...-+...--|++-.|....
T Consensus 120 ~~~g~L~I~ipk~~~~~~ee~~~lr~~I~~s~~~pk~gi~Fv~~~~~~~~------------------------------ 169 (1180)
T KOG1932|consen 120 EDNGELLIKIPKESKKVGEELKALRLRIDFSVREPKDGIKFVRPNYIVSP------------------------------ 169 (1180)
T ss_pred cCCCeEEEEcCchhhhhhhhccceEEEEEEEccCCCCCeEEeccCcccCc------------------------------
Confidence 4568899999988542 2 3577799975422222223333331110
Q ss_pred ccceEeecccCcccccccceeeccccCCCcceEEecc-ccCCCccccccCCCCCceeeEEEEEEecCCceeeeccccccc
Q psy5250 125 AKFAISLSVPSSKVALSNMVRIAILDDEDRYMAVTQF-ELTDARRCFPCWDEPAVKAKFSISLSVPNNKVALSNMPVKSE 203 (1102)
Q Consensus 125 atf~i~~~~~~~~~~lsN~~~~~~~~~~~~~~~~t~f-eP~~Ar~~FPc~DeP~~KAtF~itI~~p~~~~alSng~~~~~ 203 (1102)
.+..+.++.. -+.+||.||||.|.+..+++|++..++|+.+.++++|.+.+.
T Consensus 170 ---------------------------~~~hvft~~~~~~s~ar~WfPCvD~~~e~~tWeLeftvp~~~~av~~geLl~~ 222 (1180)
T KOG1932|consen 170 ---------------------------RDKHVFTNNTQISSSARSWFPCVDSSYERCTWELEFTVPKNLVAVSCGELLEQ 222 (1180)
T ss_pred ---------------------------ccCceEeecCccccccceEEeecCCccccceEEEEEEecccceeccchhhhhe
Confidence 1222333333 345699999999999999999999999999999999998776
Q ss_pred ccCCC-CeEEEEEEeCCCCCceeEEEEEecceEEeeeecCCeEEEEEecCCchhhHHHHHHHHHHHHHHHHHhhCCCCCC
Q psy5250 204 SPQPD-GHRLLQFETSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPL 282 (1102)
Q Consensus 204 ~~~~~-~~~~~~F~~t~pmstYl~a~~vg~f~~~~~~s~~gi~irv~~~p~~~~~~~~al~~~~~~L~~~e~~fGi~YPl 282 (1102)
....+ .+++++|..+.|+++..++|+||.|.....+ .+++|..|+.|+.....+...-...++++|||+.+|..|||
T Consensus 223 v~~~D~~Kkt~~ys~tvPvA~~~I~~AiG~F~~~~~P--~~~~i~~f~LP~~~~~v~nt~~~l~k~iefye~~ls~rYPF 300 (1180)
T KOG1932|consen 223 VETPDLRKKTYHYSLTVPVAPSNIGFAIGPFKSYVEP--SMIDITHFCLPGLEPLVKNTTVYLHKAIEFYEEELSSRYPF 300 (1180)
T ss_pred eecccccccEEEEEEeccCCccccceeeccccccCCC--ccCcceeEecCcchHHhhhHHHHHHHHHHHHHHHhccCCCc
Confidence 54444 5788999999999999999999999988544 48899999999999999999999999999999999988999
Q ss_pred CCCCeeecCC------------------CC-----------------cchh--------ccccchhhhhHh-HHHHHHHH
Q psy5250 283 PKIDLVAIPV------------------GH-----------------PSEV--------EEIFDDISYNKG-ASIIRMLQ 318 (1102)
Q Consensus 283 ~kld~VavPd------------------aH-----------------ElaH--------~~WW~dlWLnEG-Aty~e~l~ 318 (1102)
+-+.+|.+|. .| -+|. ..-|+|.||-+| |.|+..+.
T Consensus 301 ~~~k~VFvd~~~~~i~~~asl~I~st~lLy~~~iIDq~~~tr~~La~aLA~Q~fg~yIsp~~wsD~Wl~~GiagYl~~l~ 380 (1180)
T KOG1932|consen 301 SCYKTVFVDEAAVEISSYASLSIFSTSLLYSKNIIDQTFLTRRKLAWALASQWFGVYISPVDWSDFWLLKGIAGYLTGLF 380 (1180)
T ss_pred ceeeEEEecCCcceeeecceeeeeeccccchHhhhhHHHHHHHHHHHHHHHhhhEEEeeccchhhhHHHHhHHHHHHHHH
Confidence 9999999997 01 1111 233799999999 99999888
Q ss_pred HHhcCCC
Q psy5250 319 KYIGDGK 325 (1102)
Q Consensus 319 ~~~~~~~ 325 (1102)
.....|.
T Consensus 381 ~kk~lGN 387 (1180)
T KOG1932|consen 381 VKKFLGN 387 (1180)
T ss_pred HHHHhCc
Confidence 8776664
No 19
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=98.45 E-value=6.8e-07 Score=102.47 Aligned_cols=311 Identities=35% Similarity=0.603 Sum_probs=233.2
Q ss_pred eEEecCCceeEEEEEcChhhHHhhhhhhccCCCCcchhhhhHHHHHHHHHcCCccHHHHHHHHHhh-ccccchhhHHHHH
Q psy5250 417 WIKLNPGTVGYYRVKYPRETLAQFIPSVEDKSIPPLDRLSLLDDLFALAQVGEVSLVEVLKMIQSM-THEDNYTVWITIC 495 (1102)
Q Consensus 417 wi~lN~~~~GyYRV~Yd~~~~~~L~~~l~~~~l~~~dR~~Li~Daf~la~ag~l~y~~~l~l~~~l-~~E~~y~vW~~a~ 495 (1102)
||++|.+++|||||+||+++|+.|.+++....||+.||++|++|+|+|+++|.++++.+|+++.++ .+|++|.||..++
T Consensus 1 wi~~N~~~~GyyRV~Yd~~~~~~l~~~L~~~~l~~~~R~~ll~D~~al~~~g~~~~~~~l~l~~~~~~~E~~~~vw~~~~ 80 (324)
T PF11838_consen 1 WIKLNAGQTGYYRVNYDEENWDALIKQLQSNHLSPLDRAQLLDDLFALARAGRLSYSDFLDLLEYLLPNETDYVVWSTAL 80 (324)
T ss_dssp EEEESGGGSSSSEEEECTTHHHHHHHHHHHHGS-HHHHHHHHHHHHHHHHTTSS-HHHHHHHHGGG-GT--SHHHHHHHH
T ss_pred CEEEeCCceEEEEEeCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHH
Confidence 999999999999999999999999999976569999999999999999999999999999999999 9999999999999
Q ss_pred HHHHhhhhhhcc-chh-hhhhhccCcccccCCCCCCceEEEEeecCCcceeEEEEEEecceeeeeeecCCeEEEEEeecc
Q psy5250 496 NCLQKIDLLLSN-TEY-HHLFYQFGPVKSESPQPDGHRLLQFETSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVG 573 (1102)
Q Consensus 496 ~~L~~l~~~ls~-~~~-~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (1102)
..+..+...+.. .+. ...|++|.. +++
T Consensus 81 ~~l~~l~~~l~~~~~~~~~~~~~~~~-----------------------------------------------~l~---- 109 (324)
T PF11838_consen 81 SNLSSLRNRLYAEDEELQEAFRKFVR-----------------------------------------------RLL---- 109 (324)
T ss_dssp HHHHHHHHHHCSC-HHHHHHHHHHHH-----------------------------------------------HHH----
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH-----------------------------------------------HHH----
Confidence 999999966652 222 223555543 111
Q ss_pred cchhhhHHHHHHhhhhHHHHhhhccCCCCCccceeccCCCccccccccCccccccccccccccCCCCcccccchhhhhhh
Q psy5250 574 KREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVALNPGTVGYYRVKYPRETLAQFIPSVEDKSIPPLDRLSLLDDLFA 653 (1102)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (1102)
-+.+++. |.. ++ ++ + ++....+
T Consensus 110 ---------------~~~~~~l-~~~---~~-------~~-----------~--------------------~~~~~~l- 131 (324)
T PF11838_consen 110 ---------------EPLYERL-GWD---PR-------PG-----------E--------------------DHNDRLL- 131 (324)
T ss_dssp ---------------HHHHHH---SS---SS--------------------S--------------------CHHHHHH-
T ss_pred ---------------HHHHHHc-CCC---Cc-------cc-----------c--------------------cHHHHHH-
Confidence 1112221 110 00 00 0 1111111
Q ss_pred ccCCCCCCcccCccccCccccccCCCCCCCcCCCCCCCCCCcccccceeeeecceecccCCCchhhhhhhHHHHHHHHHh
Q psy5250 654 CHGELGPSHLSGSVSSGRLSEHIGYHPTEHSSGCGARVGSPVMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELA 733 (1102)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~e~~g~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~e~a 733 (1102)
|..+....+ +..
T Consensus 132 -------------------------------------------------------------------r~~~~~~a~-~~~ 143 (324)
T PF11838_consen 132 -------------------------------------------------------------------RALLLSLAC-GDP 143 (324)
T ss_dssp -------------------------------------------------------------------HHHHHHHHH-T-H
T ss_pred -------------------------------------------------------------------HHHHHHHhc-cch
Confidence 222122111 222
Q ss_pred hhhccCccchhhhhHHHHHHHHHHHHHHhhcCC----CCCccchhhhhhhchhhhHHHHhhhhcCCCcccchhhhHhHHH
Q psy5250 734 HQWFGNLVTMEWWTHLWLNEGYASFVEFLCVHH----LFPEYDIWTQFVTDNLVRALELDALKSSHPTQFVTDNLVRALE 809 (1102)
Q Consensus 734 ~~wfg~~~~~~~~~~~wl~e~~a~~~~~~~~~~----~~p~~~~~~~~~~~~l~~a~~~da~~~s~p~~~~~~~~~~~~~ 809 (1102)
.+ ++++...|.+++..+. .+|+ +++.+++|-+++.+....
T Consensus 144 ~~---------------~~~a~~~~~~~~~~~~~~~~~i~~----------dlr~~v~~~~~~~g~~~~----------- 187 (324)
T PF11838_consen 144 EC---------------VAEARELFKAWLDGNDSPESSIPP----------DLRWAVYCAGVRNGDEEE----------- 187 (324)
T ss_dssp HH---------------HHHHHHHHHHHHHTTT-TTSTS-H----------HHHHHHHHHHTTS--HHH-----------
T ss_pred hH---------------HHHHHHHHHHHhcCCcccccccch----------HHHHHHHHHHHHHhhHhh-----------
Confidence 22 7888888888887532 5677 999999999999987666
Q ss_pred HHHhhcCCCceeecCCcchHHHHHHHhhhccCCCHHHHHHHHHhhcccc-ccccchHHHHHHhh-cccccchhHHHHHHh
Q psy5250 810 LDALKSSHPIELYQNSDMQEEKDRISRSFSALKDPELLRKVLDFSMSDL-VRAQDSVFVIISAA-QTKTGRELAWEFLKN 887 (1102)
Q Consensus 810 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~-~~~~d~~~~~~~~~-~~~~~~~~~w~~~~~ 887 (1102)
|+.+ +..|+++...+++..++.+++|.++++++++++++++++. ++.+|...++.++. .++.++.++|+|+.+
T Consensus 188 ~~~l-----~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 188 WDFL-----WELYKNSTSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHH-----HHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHH-----HHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHH
Confidence 8888 8889999899999999999999999999999999999875 89999989998887 789999999999999
Q ss_pred hHHHHHHHhcCC--chhhhHHhhhhhcCCHHHHHHHHHHHh--cCCCchhhhHHHHHHHHHH
Q psy5250 888 NYATFTERYKGG--LLGRLVKHTTENFASESHAQEVTEFFT--KNPTSWIERTVQQSVETIR 945 (1102)
Q Consensus 888 n~~~l~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~ 945 (1102)
||+.|.++++.+ .+.+++..+...+.+++.++++++||. .+..++..+.+.++++.|+
T Consensus 263 n~~~i~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~f~~~~~~~~~~~~r~l~q~~e~Ir 324 (324)
T PF11838_consen 263 NWDAIIKKFGTNSSALSRVIKSFAGNFSTEEQLDELEEFFEDKPKPPPGLRRALAQSLETIR 324 (324)
T ss_dssp CHHHHHCHC-TTSHCCHHHHHCCCTT--SHHHHHHHHHHHHHHCTCCCTTTHHCHHHHHHHH
T ss_pred HHHHHHHHhcCCChHHHHHHHHHhccCCCHHHHHHHHHHHhhCcCCChHHHHHHHHHHHhcC
Confidence 999999999865 678888888888999999999999994 4455677889999888764
No 20
>KOG1932|consensus
Probab=98.39 E-value=1e-06 Score=109.03 Aligned_cols=178 Identities=18% Similarity=0.284 Sum_probs=122.7
Q ss_pred CCCceEEEEeecCCcceeEEEEEEecceeeeeeecCCeEEEEEeecccchhhhHHHHHHhhhhHHHHhhhccCCCCCccc
Q psy5250 527 PDGHRLLQFETSPIMSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKID 606 (1102)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 606 (1102)
.-+.+.+.|+-+.||.+.-+||+||.|+...+.+ +..|..|+-|+...--.-.--...++++||+++++..||.+-+.
T Consensus 227 D~~Kkt~~ys~tvPvA~~~I~~AiG~F~~~~~P~--~~~i~~f~LP~~~~~v~nt~~~l~k~iefye~~ls~rYPF~~~k 304 (1180)
T KOG1932|consen 227 DLRKKTYHYSLTVPVAPSNIGFAIGPFKSYVEPS--MIDITHFCLPGLEPLVKNTTVYLHKAIEFYEEELSSRYPFSCYK 304 (1180)
T ss_pred cccccEEEEEEeccCCccccceeeccccccCCCc--cCcceeEecCcchHHhhhHHHHHHHHHHHHHHHhccCCCcceee
Confidence 3456788999999999999999999999874443 67788888776554333334456789999999999999999999
Q ss_pred eeccCCCccccccccCccccccccccccccCCCCcccccchhhhhhhccCCCCCCcccCccccCccccccCCCCCCCcCC
Q psy5250 607 LVALNPGTVGYYRVKYPRETLAQFIPSVEDKSIPPLDRLSLLDDLFACHGELGPSHLSGSVSSGRLSEHIGYHPTEHSSG 686 (1102)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1102)
+|-|++..+ -+
T Consensus 305 ~VFvd~~~~---------------------------------------------------~i------------------ 315 (1180)
T KOG1932|consen 305 TVFVDEAAV---------------------------------------------------EI------------------ 315 (1180)
T ss_pred EEEecCCcc---------------------------------------------------ee------------------
Confidence 999843300 00
Q ss_pred CCCCCCCCcccccceeeeecceecccCCCchhhhhhhHHHHHHHHHhhhhccCccchhhhhHHHHHHHHHHHHHHhhcCC
Q psy5250 687 CGARVGSPVMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHLWLNEGYASFVEFLCVHH 766 (1102)
Q Consensus 687 ~~a~~~~~~~e~~g~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~e~a~~wfg~~~~~~~~~~~wl~e~~a~~~~~~~~~~ 766 (1102)
|-...+..+ -+.+||...... +-......+++-+|.||||-.+|+.-|+|.||-+|.|.|+-.+.+.+
T Consensus 316 ---------~~~asl~I~-st~lLy~~~iID--q~~~tr~~La~aLA~Q~fg~yIsp~~wsD~Wl~~GiagYl~~l~~kk 383 (1180)
T KOG1932|consen 316 ---------SSYASLSIF-STSLLYSKNIID--QTFLTRRKLAWALASQWFGVYISPVDWSDFWLLKGIAGYLTGLFVKK 383 (1180)
T ss_pred ---------eecceeeee-eccccchHhhhh--HHHHHHHHHHHHHHHhhhEEEeeccchhhhHHHHhHHHHHHHHHHHH
Confidence 111111122 235666544321 22334456899999999999999999999999999999988777665
Q ss_pred CCC--ccchhhhhhhchhhhHHHHhh
Q psy5250 767 LFP--EYDIWTQFVTDNLVRALELDA 790 (1102)
Q Consensus 767 ~~p--~~~~~~~~~~~~l~~a~~~da 790 (1102)
.+. +++.| +-.++.+++..|-
T Consensus 384 ~lGNNEyry~---lKk~~d~V~~~d~ 406 (1180)
T KOG1932|consen 384 FLGNNEYRYQ---LKKALDAVVDYDV 406 (1180)
T ss_pred HhCchHHHHH---HHHHHHHHHHhhh
Confidence 433 33332 2224445555554
No 21
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=97.18 E-value=0.00027 Score=68.85 Aligned_cols=41 Identities=44% Similarity=0.745 Sum_probs=36.7
Q ss_pred hhhhHHHHHHHHHhhhhccCccchhhhhHHHHHHHHHHHHH
Q psy5250 720 TRQNIALVVGHELAHQWFGNLVTMEWWTHLWLNEGYASFVE 760 (1102)
Q Consensus 720 ~~~~~~~~~~~e~a~~wfg~~~~~~~~~~~wl~e~~a~~~~ 760 (1102)
....+..+++||++|+|+++.+......+.|++||+|.|++
T Consensus 21 ~~~~~~~~l~HE~~H~~~~~~~~~~~~~~~W~~EG~A~y~~ 61 (128)
T PF13485_consen 21 DEDWLDRVLAHELAHQWFGNYFGGDDNAPRWFNEGLAEYVE 61 (128)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCccCchHHHHHHHHHHh
Confidence 34556689999999999999998778889999999999998
No 22
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=89.38 E-value=0.053 Score=52.57 Aligned_cols=77 Identities=14% Similarity=0.116 Sum_probs=40.6
Q ss_pred CCcchh------c--cccchhhhhHh-HHHHHHHHHHhcCCCCcccCCCc--cccc-cCCccccccccchhhccchHHHH
Q psy5250 293 GHPSEV------E--EIFDDISYNKG-ASIIRMLQKYIGDGKYPILLRPS--FQIP-VGHPSEVEEIFDDISYNKGASII 360 (1102)
Q Consensus 293 aHElaH------~--~WW~dlWLnEG-Aty~e~l~~~~~~~~~~~~l~~~--~~i~-~~~~~~i~~~~~~~~Y~KG~~vl 360 (1102)
+||++| . ......|++|| |+|++..............+... .... ..........+....|.+|..++
T Consensus 30 ~HE~~H~~~~~~~~~~~~~~~W~~EG~A~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Y~~~~~~~ 109 (128)
T PF13485_consen 30 AHELAHQWFGNYFGGDDNAPRWFNEGLAEYVEGRIEDEFDEDLKQAIESGSLPPLEPLNSSFDFSWEDDSLAYYQGYLFV 109 (128)
T ss_pred HHHHHHHHHHHHcCCCccCchHHHHHHHHHHhcCccchhHHHHHHHHHcCCCCChHHHhccccccccccccHHHHHHHHH
Confidence 799999 1 13467899999 99999321110000000000000 0000 00001113344556999999999
Q ss_pred HHHHHHhcC
Q psy5250 361 RMLQKYIGD 369 (1102)
Q Consensus 361 ~mL~~~iG~ 369 (1102)
++|....|+
T Consensus 110 ~~L~~~~G~ 118 (128)
T PF13485_consen 110 RFLEEKYGR 118 (128)
T ss_pred HHHHHHHHH
Confidence 999987664
No 23
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=89.28 E-value=1.5 Score=50.87 Aligned_cols=72 Identities=21% Similarity=0.154 Sum_probs=49.3
Q ss_pred ccccceeeeecceecccCCCchhhhhhhHHHHHHHHHhhhh--ccCccchhh--hhHHHHHHHHHHHHHHhhcCCCCCc
Q psy5250 696 MENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQW--FGNLVTMEW--WTHLWLNEGYASFVEFLCVHHLFPE 770 (1102)
Q Consensus 696 ~e~~g~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~e~a~~w--fg~~~~~~~--~~~~wl~e~~a~~~~~~~~~~~~p~ 770 (1102)
--|.|.++|=....++..... ..+.+..++|||+-|+- --+.|.+.- =.++|||||++.-+|.+......|.
T Consensus 114 ~SNe~e~~YiD~~~~~~~~~~---~~~~~~sTlAHEfQHmInfy~~~v~~g~~~~~dtWLnE~lS~~aEdl~s~~~~~~ 189 (366)
T PF10460_consen 114 YSNESEYFYIDSETLYLGGNS---GPDTVYSTLAHEFQHMINFYQRGVLHGKQYAMDTWLNEMLSMSAEDLYSSKIDPG 189 (366)
T ss_pred CCcceeEEEEecHHhhccCCc---cHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHhcCCCcc
Confidence 668888888766554422221 25567889999999983 223444432 2589999999999999987766444
No 24
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria.
Probab=83.38 E-value=0.59 Score=46.17 Aligned_cols=38 Identities=26% Similarity=0.227 Sum_probs=27.8
Q ss_pred HHHHHHHhhhhccCc--cchhhhhHHHHHHHHHHHHHHhh
Q psy5250 726 LVVGHELAHQWFGNL--VTMEWWTHLWLNEGYASFVEFLC 763 (1102)
Q Consensus 726 ~~~~~e~a~~wfg~~--~~~~~~~~~wl~e~~a~~~~~~~ 763 (1102)
.+|+||-+||-.-|. ...--=.+.|+.||+|+|+|-..
T Consensus 3 ~T~~HEa~HQl~~N~Gl~~r~~~~P~Wv~EGlA~yFE~~~ 42 (128)
T PF07607_consen 3 ATIAHEATHQLAFNTGLHPRLADWPRWVSEGLATYFETPG 42 (128)
T ss_pred hHHHHHHHHHHHHHccccccCCCCchHHHHhHHHHcCCCc
Confidence 579999999988763 22222236889999999998544
No 25
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=71.64 E-value=6.6 Score=45.64 Aligned_cols=32 Identities=19% Similarity=-0.068 Sum_probs=25.1
Q ss_pred CCcchhcccc------------chhhhhHh-HHHHHHHHHHhcCC
Q psy5250 293 GHPSEVEEIF------------DDISYNKG-ASIIRMLQKYIGDG 324 (1102)
Q Consensus 293 aHElaH~~WW------------~dlWLnEG-Aty~e~l~~~~~~~ 324 (1102)
+||.-||--| .|+||||| |.-+|.+......+
T Consensus 144 AHEfQHmInfy~~~v~~g~~~~~dtWLnE~lS~~aEdl~s~~~~~ 188 (366)
T PF10460_consen 144 AHEFQHMINFYQRGVLHGKQYAMDTWLNEMLSMSAEDLYSSKIDP 188 (366)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHhcCCCc
Confidence 8999993333 48999999 99999988776543
No 26
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=55.53 E-value=11 Score=40.65 Aligned_cols=40 Identities=30% Similarity=0.326 Sum_probs=31.5
Q ss_pred hhhhHHHHHHHHHhhhhccCcc--chhhhhHHHHHHHHHHHHHHhhc
Q psy5250 720 TRQNIALVVGHELAHQWFGNLV--TMEWWTHLWLNEGYASFVEFLCV 764 (1102)
Q Consensus 720 ~~~~~~~~~~~e~a~~wfg~~~--~~~~~~~~wl~e~~a~~~~~~~~ 764 (1102)
.+..|..++-|||+|+|=.+-- .+. ||-||.|.|+.+.++
T Consensus 92 ~~~Ei~Gvl~HE~~H~~Q~~~~~~~P~-----~liEGIADyVRl~aG 133 (205)
T PF04450_consen 92 VRDEIIGVLYHEMVHCWQWDGRGTAPG-----GLIEGIADYVRLKAG 133 (205)
T ss_pred hHHHHHHHHHHHHHHHhhcCCCCCCCh-----hheecHHHHHHHHcC
Confidence 3578999999999998765543 333 599999999998864
No 27
>PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M61 (glycyl aminopeptidase family, clan MA(E)).The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example is glycyl aminopeptidase from Sphingomonas capsulata.
Probab=55.53 E-value=3.5 Score=40.46 Aligned_cols=41 Identities=24% Similarity=0.476 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhhhccC-----------ccchhhhhHHHHHHHHHHHHHHhhc
Q psy5250 724 IALVVGHELAHQWFGN-----------LVTMEWWTHLWLNEGYASFVEFLCV 764 (1102)
Q Consensus 724 ~~~~~~~e~a~~wfg~-----------~~~~~~~~~~wl~e~~a~~~~~~~~ 764 (1102)
...+++||.-|.|=+- +-.+.-=+.||+-||+..|++.+..
T Consensus 4 ~l~l~sHEffH~WnvkrirP~~l~p~dy~~~~~t~~LWv~EG~T~Y~~~l~l 55 (122)
T PF05299_consen 4 FLGLLSHEFFHSWNVKRIRPAELGPFDYEKPNYTELLWVYEGFTSYYGDLLL 55 (122)
T ss_pred hhhhhhhhccccccceEeccccccCCCCCCCCCCCCEeeeeCcHHHHHHHHH
Confidence 4568999999999854 4444445678999999999987763
No 28
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=52.98 E-value=12 Score=42.88 Aligned_cols=38 Identities=34% Similarity=0.351 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHhhhhccCccchhhhhHHHHHHHHHHHHHHhhcC
Q psy5250 722 QNIALVVGHELAHQWFGNLVTMEWWTHLWLNEGYASFVEFLCVH 765 (1102)
Q Consensus 722 ~~~~~~~~~e~a~~wfg~~~~~~~~~~~wl~e~~a~~~~~~~~~ 765 (1102)
..++.+|-||||||=+. . =+|.=.||+||+|++..++.
T Consensus 163 ~~LA~LIfHELaHq~~Y----v--~~dt~FNEsfAtfVe~~G~~ 200 (337)
T PF10023_consen 163 GELARLIFHELAHQTLY----V--KGDTAFNESFATFVEREGAR 200 (337)
T ss_pred hHHHHHHHHHHhhceee----c--CCCchhhHHHHHHHHHHHHH
Confidence 46899999999999431 1 11333899999999877653
No 29
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=51.75 E-value=15 Score=40.17 Aligned_cols=39 Identities=33% Similarity=0.269 Sum_probs=29.2
Q ss_pred hhhHHHHHHHHHhhhhccCccchhhhhHHHHHHHHHHHHHHhhcC
Q psy5250 721 RQNIALVVGHELAHQWFGNLVTMEWWTHLWLNEGYASFVEFLCVH 765 (1102)
Q Consensus 721 ~~~~~~~~~~e~a~~wfg~~~~~~~~~~~wl~e~~a~~~~~~~~~ 765 (1102)
-..++..|-||+|||=|--- +|.=.||+||+++|..++.
T Consensus 194 d~~lA~LIFHELAHQk~Y~~------~DtAFNEsFAtaVEt~Gvr 232 (376)
T COG4324 194 DTYLASLIFHELAHQKIYVN------NDTAFNESFATAVETSGVR 232 (376)
T ss_pred hHHHHHHHHHHHhhheEeec------CcchHhHHHHHHHHHHhHH
Confidence 35789999999999966411 2333799999999977654
No 30
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria.
Probab=43.07 E-value=8.4 Score=38.16 Aligned_cols=24 Identities=13% Similarity=0.133 Sum_probs=16.9
Q ss_pred CCcchh--------ccccc--hhhhhHh-HHHHHH
Q psy5250 293 GHPSEV--------EEIFD--DISYNKG-ASIIRM 316 (1102)
Q Consensus 293 aHElaH--------~~WW~--dlWLnEG-Aty~e~ 316 (1102)
+||.+| .+--+ -.|+.|| |+|+|-
T Consensus 6 ~HEa~HQl~~N~Gl~~r~~~~P~Wv~EGlA~yFE~ 40 (128)
T PF07607_consen 6 AHEATHQLAFNTGLHPRLADWPRWVSEGLATYFET 40 (128)
T ss_pred HHHHHHHHHHHccccccCCCCchHHHHhHHHHcCC
Confidence 688888 11111 3799999 999984
No 31
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=42.63 E-value=86 Score=29.30 Aligned_cols=61 Identities=21% Similarity=0.392 Sum_probs=34.8
Q ss_pred EecCCEEEEec-CCce--EEEEEEEecCCccccc-eEEEeCCCeEEEEEeCCccCCceEEEEEEEEE
Q psy5250 14 VSETKELKLHV-IDLD--FKKVQLELADGKVLTP-ETKISTEDETITLTFSETLPVGEVKLLFEYVG 76 (1102)
Q Consensus 14 ~~~t~~i~lh~-~~l~--i~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~l~~g~~~l~i~y~g 76 (1102)
..+-..|.|.- ..++ ...+.|.+.+|+.... ....+.....+++.++.+|.+|.|++ .|+.
T Consensus 16 ~~~P~~v~L~F~e~v~~~~s~v~v~~~~g~~v~~~~~~~~~~~~~~~~~l~~~l~~G~YtV--~wrv 80 (97)
T PF04234_consen 16 AAAPEEVTLTFSEPVEPGFSSVTVTDPDGKRVDLGEPTVDGDGKTLTVPLPPPLPPGTYTV--SWRV 80 (97)
T ss_dssp -S--SSEEEEESS---CCC-EEEEEEEEETTSCTCEEEEEESTTEEEEEESS---SEEEEE--EEEE
T ss_pred ecCCCEEEEEeCCCCccCccEEEEEcCCCceeecCcceecCCceEEEEECCCCCCCceEEE--EEEE
Confidence 34556677775 4455 7888888887765443 24444467899999999999886655 4544
No 32
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=42.04 E-value=66 Score=32.57 Aligned_cols=49 Identities=29% Similarity=0.502 Sum_probs=36.3
Q ss_pred Ccccc-ceEEEeCCCeEEEEEeCCccCCc-eEEEEEEEEEeeCCCccceeeee
Q psy5250 39 GKVLT-PETKISTEDETITLTFSETLPVG-EVKLLFEYVGELNDKMKGFYRSK 89 (1102)
Q Consensus 39 ~~~~~-~~~~~~~~~~~l~i~~~~~l~~g-~~~l~i~y~g~~~~~~~G~y~~~ 89 (1102)
|+.++ ...+.+.++..+.|.|++|+.|| .+.+.+ .+.-|....|.|...
T Consensus 74 g~~ipl~~v~~~~~~~~i~I~f~~PV~pG~tv~V~l--~~v~NP~~~G~Y~f~ 124 (146)
T PF10989_consen 74 GESIPLAEVEWDEDGRTITITFDEPVPPGTTVTVVL--SPVRNPRSGGTYQFN 124 (146)
T ss_pred CCccCceEEEEcCCCCEEEEEeCCCCCCCCEEEEEE--EeeeCCCCCCeEEEE
Confidence 45555 45888899999999999999999 555555 444466667888754
No 33
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=39.66 E-value=38 Score=34.58 Aligned_cols=21 Identities=33% Similarity=0.343 Sum_probs=16.6
Q ss_pred hhHHHHHHhhhhHHHHhhhcc
Q psy5250 578 GQFALHVASKVLPFYKDYFNI 598 (1102)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~ 598 (1102)
+.-|..-+.++.+||++.|+.
T Consensus 69 ~vdA~~~~~~v~d~y~~~~gr 89 (150)
T PF01447_consen 69 AVDAHYNAGKVYDYYKNVFGR 89 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHhHHHHHHHHHHHHCC
Confidence 334566789999999999994
No 34
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=38.49 E-value=23 Score=26.60 Aligned_cols=20 Identities=5% Similarity=0.348 Sum_probs=17.6
Q ss_pred HHHHHHHHcHHHHHHHHhhC
Q psy5250 1083 LNSECLKRDGEAVKQFLSTL 1102 (1102)
Q Consensus 1083 ~Ni~W~~~~~~~v~~WL~~~ 1102 (1102)
.|....+++.++|.+|+++|
T Consensus 4 i~~~fieryfddiqkwirni 23 (40)
T PF13124_consen 4 IYTAFIERYFDDIQKWIRNI 23 (40)
T ss_pred ehHHHHHHHHHHHHHHHHHH
Confidence 57788999999999999875
No 35
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=38.13 E-value=1.4e+02 Score=31.81 Aligned_cols=52 Identities=13% Similarity=0.208 Sum_probs=32.6
Q ss_pred hhhhHHHHHHHHHhhhh-ccCcc-chhh--hhHHHHHHHHHHHHHHhhcC-CCCCcc
Q psy5250 720 TRQNIALVVGHELAHQW-FGNLV-TMEW--WTHLWLNEGYASFVEFLCVH-HLFPEY 771 (1102)
Q Consensus 720 ~~~~~~~~~~~e~a~~w-fg~~~-~~~~--~~~~wl~e~~a~~~~~~~~~-~~~p~~ 771 (1102)
...++..+||||+-|.+ +...- ++.. =-+.-+.||+|.++...... ...++|
T Consensus 61 ~~~~l~~~iaHE~hH~~r~~~~~~~~~~~TLld~~I~EGlAe~f~~~~~g~~~~~~w 117 (195)
T PF10026_consen 61 SLEELPALIAHEYHHNCRYEQIGWDPEDTTLLDSLIMEGLAEYFAEELYGEEYLGPW 117 (195)
T ss_pred cHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHhhHHHHHHHHHcCCCCCchh
Confidence 45689999999999984 33321 0001 11345899999998766543 344555
No 36
>PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M61 (glycyl aminopeptidase family, clan MA(E)).The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example is glycyl aminopeptidase from Sphingomonas capsulata.
Probab=37.71 E-value=14 Score=36.30 Aligned_cols=19 Identities=16% Similarity=-0.038 Sum_probs=15.8
Q ss_pred chhhhhHh-HHHHHHHHHHh
Q psy5250 303 DDISYNKG-ASIIRMLQKYI 321 (1102)
Q Consensus 303 ~dlWLnEG-Aty~e~l~~~~ 321 (1102)
+.+|+-|| ++|++.+....
T Consensus 38 ~~LWv~EG~T~Y~~~l~l~R 57 (122)
T PF05299_consen 38 ELLWVYEGFTSYYGDLLLVR 57 (122)
T ss_pred CCEeeeeCcHHHHHHHHHHH
Confidence 67899999 99999776654
No 37
>PF05596 Taeniidae_ag: Taeniidae antigen; InterPro: IPR008860 This family consists of several antigen proteins from Taenia and Echinococcus (tapeworm) species.
Probab=36.51 E-value=1.2e+02 Score=26.37 Aligned_cols=51 Identities=20% Similarity=0.290 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHhhcCCCchHHhHHHHHHHHHHHHHHHHHHcHHHHHHHHhhC
Q psy5250 1050 ASESHAQEVTEFFTKNPTSWIERTVQQSVETIRLNSECLKRDGEAVKQFLSTL 1102 (1102)
Q Consensus 1050 ~T~~el~ev~~Ff~~~~~~~~~r~~~qalE~i~~Ni~W~~~~~~~v~~WL~~~ 1102 (1102)
++...+++++.||...| -+.+.++-+-+-...-..++.+-+..|.+.++.|
T Consensus 11 ~~kK~i~~v~~FF~~DP--lGqkIa~l~kdw~~~~~~~r~KiR~~L~ey~k~L 61 (64)
T PF05596_consen 11 SVKKWIEEVRNFFYEDP--LGQKIAQLAKDWNEICQEVRKKIRAALAEYCKGL 61 (64)
T ss_pred hHHHHHHHHHHHhccCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35678999999998776 3566777777777777788888888888877643
No 38
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=36.31 E-value=1.7e+02 Score=27.97 Aligned_cols=76 Identities=17% Similarity=0.259 Sum_probs=43.1
Q ss_pred HHHHHHhHHHHHHHcCcchHHHhH-HhhcccCCCHHHHHHHHHHhh--------------cCCCchHHhHHHHHHHHHHH
Q psy5250 1019 WDFLKNNYATFTERYKGGLLGRLV-KHTTENFASESHAQEVTEFFT--------------KNPTSWIERTVQQSVETIRL 1083 (1102)
Q Consensus 1019 W~Fl~~NW~~I~~r~~~~~l~~lI-~~~t~~f~T~~el~ev~~Ff~--------------~~~~~~~~r~~~qalE~i~~ 1083 (1102)
|+|++.||.-|..-++. ...++ --+.+.+.+.++++++.+=+. .-|...--..++-.++.++.
T Consensus 2 ~~~~~~~w~ii~a~~~~--~~~~~~~~l~~~~a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G 79 (106)
T PF10805_consen 2 WEFIKKNWGIIWAVFGI--AGGIFWLWLRRTYAKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRG 79 (106)
T ss_pred hHHHHhCcHHHHHHHHH--HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 89999999988766531 11222 223456778777777743332 22333333456666666666
Q ss_pred HHHHHHHcHHHHH
Q psy5250 1084 NSECLKRDGEAVK 1096 (1102)
Q Consensus 1084 Ni~W~~~~~~~v~ 1096 (1102)
.++=.+.....|.
T Consensus 80 ~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 80 ELKELSARLQGVS 92 (106)
T ss_pred HHHHHHHHHHHHH
Confidence 6655555544443
No 39
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=31.65 E-value=70 Score=38.80 Aligned_cols=43 Identities=26% Similarity=0.487 Sum_probs=32.1
Q ss_pred hhhHHHHHHHHHhhhhccCccchh-hh----------hHHHHHHHHHHHHHHhh
Q psy5250 721 RQNIALVVGHELAHQWFGNLVTME-WW----------THLWLNEGYASFVEFLC 763 (1102)
Q Consensus 721 ~~~~~~~~~~e~a~~wfg~~~~~~-~~----------~~~wl~e~~a~~~~~~~ 763 (1102)
-+.....++||..|-|=+--+-+. -| .-+|+.|||..|.+-+.
T Consensus 244 y~~~l~llsHEyfH~WNvKrIrpa~l~p~~~d~en~t~~lW~~EG~T~Yy~~ll 297 (558)
T COG3975 244 YQDLLGLLSHEYFHAWNVKRIRPAALEPFNLDKENYTPLLWFSEGFTSYYDRLL 297 (558)
T ss_pred HHHHHHHHHHHHHHhccceeccccccCCccccccCCCcceeeecCchHHHHHHH
Confidence 377788999999999986544332 23 35899999999987553
No 40
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=30.73 E-value=42 Score=33.94 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=14.2
Q ss_pred hhhhHHHHHHHHHhhhhc
Q psy5250 720 TRQNIALVVGHELAHQWF 737 (1102)
Q Consensus 720 ~~~~~~~~~~~e~a~~wf 737 (1102)
....+..+|.|||||.+.
T Consensus 55 ~~~~l~~~l~HEm~H~~~ 72 (146)
T smart00731 55 GRDRLRETLLHELCHAAL 72 (146)
T ss_pred cHHHHHhhHHHHHHHHHH
Confidence 345677899999999954
No 41
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=30.03 E-value=1.9e+02 Score=35.26 Aligned_cols=62 Identities=13% Similarity=0.018 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCeeecC-C----------------------------------CCcchhcc
Q psy5250 256 EQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAIP-V----------------------------------GHPSEVEE 300 (1102)
Q Consensus 256 ~~~~~al~~~~~~L~~~e~~fGi~YPl~kld~VavP-d----------------------------------aHElaH~~ 300 (1102)
...+...+.++++++--.+.|| +-|+.++.++..- + +||..| .
T Consensus 181 ~d~~~~~~~~k~ii~~~~~vFg-~~~~~~Y~Fl~~~s~q~~GGlEH~~St~l~~~r~~~~~~~ky~~~l~llsHEyfH-~ 258 (558)
T COG3975 181 FDKERLASDTKKIIEAEIKVFG-SAPFDKYVFLLHLSDQIYGGLEHRRSTALIYDRFGFTDQDKYQDLLGLLSHEYFH-A 258 (558)
T ss_pred ccHHHHHHHHHHHHHHHHHHhc-CCCccceEEEEEecCCCCCCceeccccccccccccccchhHHHHHHHHHHHHHHH-h
Confidence 3455666778888888888899 6888887765421 1 799999 2
Q ss_pred c----------c----------chhhhhHh-HHHHHHHHH
Q psy5250 301 I----------F----------DDISYNKG-ASIIRMLQK 319 (1102)
Q Consensus 301 W----------W----------~dlWLnEG-Aty~e~l~~ 319 (1102)
| | .-+|+.|| ++|..-+..
T Consensus 259 WNvKrIrpa~l~p~~~d~en~t~~lW~~EG~T~Yy~~ll~ 298 (558)
T COG3975 259 WNVKRIRPAALEPFNLDKENYTPLLWFSEGFTSYYDRLLA 298 (558)
T ss_pred ccceeccccccCCccccccCCCcceeeecCchHHHHHHHH
Confidence 2 2 35899999 999875544
No 42
>PF03715 Noc2: Noc2p family; InterPro: IPR005343 This is a small family of mainly hypothetical proteins of unknown function.
Probab=28.46 E-value=2.6e+02 Score=31.94 Aligned_cols=97 Identities=13% Similarity=0.160 Sum_probs=61.8
Q ss_pred ccccccHHHHHHHhccCchhhHHHHHHHHHhHHHHHHHc-C---cc-hHHHhHHhhcccCCCHHHHHHHHHHhhcCCCch
Q psy5250 995 LVRAQDSVFVIISAAQTKTGRELAWDFLKNNYATFTERY-K---GG-LLGRLVKHTTENFASESHAQEVTEFFTKNPTSW 1069 (1102)
Q Consensus 995 ~Ir~QD~~~v~~sVa~n~~G~~laW~Fl~~NW~~I~~r~-~---~~-~l~~lI~~~t~~f~T~~el~ev~~Ff~~~~~~~ 1069 (1102)
..++=|....+. +..+..+.....+-+.+.+-.+...| . .. .+.-+...+. .+++.|.+......
T Consensus 172 ~~kp~d~~~~Lk-~~k~~l~t~~~~d~v~e~~~~LL~e~la~~s~sIaFPEl~~pii---------~~LKr~~K~~k~~~ 241 (299)
T PF03715_consen 172 SMKPLDFECLLK-VSKSQLRTRQFQDGVIEEVYELLLEYLAIYSYSIAFPELALPII---------VQLKRFLKSCKNAK 241 (299)
T ss_pred CCCCcCHHHHhh-ccHHHhccHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHH---------HHHHHHHHHcccHH
Confidence 355556655554 33334444555666666665544333 1 11 3334433332 56889988876667
Q ss_pred HHhHHHHHHHHHHHHHHHHHHcHH----------HHHHHHhh
Q psy5250 1070 IERTVQQSVETIRLNSECLKRDGE----------AVKQFLST 1101 (1102)
Q Consensus 1070 ~~r~~~qalE~i~~Ni~W~~~~~~----------~v~~WL~~ 1101 (1102)
..+.+++-+++++.|.+|.++.+. +|.+|+++
T Consensus 242 ~~~~ik~Li~kiee~~~~I~~kR~~v~f~p~d~~~V~~fe~~ 283 (299)
T PF03715_consen 242 FKRQIKQLIDKIEENSKFIESKRSKVDFSPKDQAQVEAFESE 283 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHHHh
Confidence 889999999999999999976554 57778765
No 43
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=24.29 E-value=1.2e+02 Score=35.08 Aligned_cols=29 Identities=14% Similarity=0.229 Sum_probs=23.4
Q ss_pred CCcchhcccc--chhhhhHh-HHHHHHHHHHh
Q psy5250 293 GHPSEVEEIF--DDISYNKG-ASIIRMLQKYI 321 (1102)
Q Consensus 293 aHElaH~~WW--~dlWLnEG-Aty~e~l~~~~ 321 (1102)
.||++|..-+ +|.=+||+ ||+.|-.+...
T Consensus 170 fHELaHq~~Yv~~dt~FNEsfAtfVe~~G~~~ 201 (337)
T PF10023_consen 170 FHELAHQTLYVKGDTAFNESFATFVEREGARR 201 (337)
T ss_pred HHHHhhceeecCCCchhhHHHHHHHHHHHHHH
Confidence 6999995554 78889999 99998766653
No 44
>PRK04860 hypothetical protein; Provisional
Probab=23.10 E-value=90 Score=32.26 Aligned_cols=17 Identities=47% Similarity=0.431 Sum_probs=14.0
Q ss_pred hhhhhHHHHHHHHHhhh
Q psy5250 719 ITRQNIALVVGHELAHQ 735 (1102)
Q Consensus 719 ~~~~~~~~~~~~e~a~~ 735 (1102)
.....+..+|.||+||-
T Consensus 58 ~~~~~l~~~v~HEl~H~ 74 (160)
T PRK04860 58 NQQAFIDEVVPHELAHL 74 (160)
T ss_pred CcHHHHHhHHHHHHHHH
Confidence 34577888999999998
No 45
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=22.27 E-value=2.1e+02 Score=23.38 Aligned_cols=45 Identities=20% Similarity=0.300 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHHhhcCCCchHHhHHHHHHHHHHHHHHHHHHcHHHHHHHHhh
Q psy5250 1049 FASESHAQEVTEFFTKNPTSWIERTVQQSVETIRLNSECLKRDGEAVKQFLST 1101 (1102)
Q Consensus 1049 f~T~~el~ev~~Ff~~~~~~~~~r~~~qalE~i~~Ni~W~~~~~~~v~~WL~~ 1101 (1102)
.-|.+++..|+++|+.++.++... ++.+... ..-....|..|+.+
T Consensus 6 ~~t~~q~~~L~~~f~~~~~p~~~~-----~~~la~~---l~l~~~~V~~WF~n 50 (57)
T PF00046_consen 6 RFTKEQLKVLEEYFQENPYPSKEE-----REELAKE---LGLTERQVKNWFQN 50 (57)
T ss_dssp SSSHHHHHHHHHHHHHSSSCHHHH-----HHHHHHH---HTSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccccccc-----ccccccc---ccccccccccCHHH
Confidence 457899999999999876553221 1111111 14445667777653
No 46
>PRK10301 hypothetical protein; Provisional
Probab=22.24 E-value=4.4e+02 Score=25.92 Aligned_cols=61 Identities=10% Similarity=0.247 Sum_probs=36.2
Q ss_pred EecCCEEEEecC-Cc--eEEEEEEEecCCccccce-EEE-eCCCeEEEEEeCCccCCceEEEEEEEEE
Q psy5250 14 VSETKELKLHVI-DL--DFKKVQLELADGKVLTPE-TKI-STEDETITLTFSETLPVGEVKLLFEYVG 76 (1102)
Q Consensus 14 ~~~t~~i~lh~~-~l--~i~~~~~~~~~~~~~~~~-~~~-~~~~~~l~i~~~~~l~~g~~~l~i~y~g 76 (1102)
..+-..|.|+-. .+ .+..+.+.+.+|+..... ... ..+...+.+.++.+|.+|.|++ +|+.
T Consensus 42 ~~~P~~V~L~F~e~v~~~~s~i~v~~~~g~~v~~~~~~~~~~~~~~~~v~l~~~L~~G~YtV--~Wrv 107 (124)
T PRK10301 42 TAAPQALTLNFSEGIEPGFSGATITGPKQENIKTLPAKRNEQDQKQLIVPLADSLKPGTYTV--DWHV 107 (124)
T ss_pred ccCCCEEEEEcCCCccccccEEEEEcCCCCEeccCCccccCCCCcEEEEECCCCCCCccEEE--EEEE
Confidence 344556777653 34 356777877776543321 222 2345678899888898886554 4544
No 47
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=21.80 E-value=65 Score=34.14 Aligned_cols=30 Identities=27% Similarity=0.397 Sum_probs=23.0
Q ss_pred chhhhhhhHHHHHHHHHhhhhccCccchhhh
Q psy5250 716 TSAITRQNIALVVGHELAHQWFGNLVTMEWW 746 (1102)
Q Consensus 716 ~~~~~~~~~~~~~~~e~a~~wfg~~~~~~~~ 746 (1102)
........|..++-|||||.++|+ =+.+.|
T Consensus 74 ~~fl~~~~i~~t~lHELaH~~~~~-H~~~F~ 103 (186)
T PF08325_consen 74 GGFLPYETILGTMLHELAHNVHGP-HDDKFW 103 (186)
T ss_pred CCEeeHHHHHHHHHHHHHhcccCC-ccHHHH
Confidence 555667889999999999999998 333443
No 48
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=20.44 E-value=3.3e+02 Score=26.99 Aligned_cols=59 Identities=17% Similarity=0.334 Sum_probs=39.3
Q ss_pred CEEEEecC---CceEEEEEEEecCCcccc-ceEEEeCCC-eEEEEEeCCccCCceEEEEEEEEE
Q psy5250 18 KELKLHVI---DLDFKKVQLELADGKVLT-PETKISTED-ETITLTFSETLPVGEVKLLFEYVG 76 (1102)
Q Consensus 18 ~~i~lh~~---~l~i~~~~~~~~~~~~~~-~~~~~~~~~-~~l~i~~~~~l~~g~~~l~i~y~g 76 (1102)
..|.|+.. ...+..++|.+.+|.... ...+.+..+ ..+.|.++.+|++|.|.+.-...+
T Consensus 47 ~~i~L~Fse~ve~~fs~~~l~~~d~~~v~t~~~~~~~~~~~~l~v~l~~~L~aG~Y~v~WrvvS 110 (127)
T COG2372 47 AAITLEFSEGVEPGFSGAKLTGPDGEEVATAGTKLDEQNHTQLEVPLPQPLKAGVYTVDWRVVS 110 (127)
T ss_pred eeEEEecCCccCCCcceeEEECCCCCccccCcccccccCCcEEEecCcccCCCCcEEEEEEEEe
Confidence 35667763 355578888887765433 234444443 459999999999998877666644
No 49
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=20.39 E-value=86 Score=36.15 Aligned_cols=32 Identities=34% Similarity=0.667 Sum_probs=23.1
Q ss_pred hHHHHHHHHHhhhhccCccchhhhhHHHHHHHHHHHHHHhhcCC
Q psy5250 723 NIALVVGHELAHQWFGNLVTMEWWTHLWLNEGYASFVEFLCVHH 766 (1102)
Q Consensus 723 ~~~~~~~~e~a~~wfg~~~~~~~~~~~wl~e~~a~~~~~~~~~~ 766 (1102)
.+-.+++||+|||- | --+|.=|.|..|++..+
T Consensus 195 ~~P~T~~HElAHq~-G-----------~a~E~EANFiayLac~~ 226 (318)
T PF12725_consen 195 SLPFTICHELAHQL-G-----------FASEDEANFIAYLACIN 226 (318)
T ss_pred cccHHHHHHHHHHh-C-----------CCCHHHHHHHHHHHHhc
Confidence 34568999999991 1 13677799999987543
Done!